Query 006803
Match_columns 630
No_of_seqs 287 out of 1432
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 14:43:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1467 Translation initiation 100.0 1.7E-90 3.6E-95 737.7 35.0 470 50-629 20-495 (556)
2 TIGR00512 salvage_mtnA S-methy 100.0 1.5E-60 3.2E-65 500.9 28.8 264 337-628 8-292 (331)
3 PRK05720 mtnA methylthioribose 100.0 7.5E-60 1.6E-64 498.2 28.6 266 336-628 10-292 (344)
4 COG0182 Predicted translation 100.0 3E-59 6.6E-64 481.5 25.0 267 338-629 13-296 (346)
5 PRK05772 translation initiatio 100.0 3.4E-58 7.5E-63 487.3 29.3 269 336-628 23-312 (363)
6 PRK06036 translation initiatio 100.0 2.9E-58 6.3E-63 484.9 28.0 265 337-629 11-292 (339)
7 PRK08535 translation initiatio 100.0 1.1E-57 2.3E-62 476.6 29.5 254 366-628 2-255 (310)
8 PRK08334 translation initiatio 100.0 2.9E-57 6.3E-62 478.5 29.0 267 337-628 22-305 (356)
9 TIGR00511 ribulose_e2b2 ribose 100.0 1.7E-56 3.8E-61 465.8 28.3 245 357-628 2-250 (301)
10 PRK06371 translation initiatio 100.0 4.7E-56 1E-60 465.8 26.6 247 336-628 19-282 (329)
11 TIGR00524 eIF-2B_rel eIF-2B al 100.0 1.3E-55 2.9E-60 459.5 28.6 249 354-628 1-264 (303)
12 PF01008 IF-2B: Initiation fac 100.0 4.8E-55 1E-59 447.3 24.7 242 382-628 1-243 (282)
13 COG1184 GCD2 Translation initi 100.0 9.1E-54 2E-58 442.0 28.5 253 367-628 2-254 (301)
14 PRK08335 translation initiatio 100.0 8E-53 1.7E-57 432.9 27.4 230 357-624 6-239 (275)
15 KOG1468 Predicted translation 100.0 3.5E-50 7.6E-55 405.9 21.1 267 337-628 11-300 (354)
16 KOG1465 Translation initiation 100.0 4E-44 8.7E-49 365.8 25.8 255 370-629 10-298 (353)
17 KOG1466 Translation initiation 100.0 6.4E-43 1.4E-47 351.2 24.6 229 388-621 28-259 (313)
18 PRK06372 translation initiatio 100.0 2.6E-38 5.7E-43 322.0 22.9 201 378-616 6-206 (253)
19 PRK00702 ribose-5-phosphate is 97.5 0.0012 2.6E-08 67.2 13.0 129 479-621 6-137 (220)
20 TIGR00021 rpiA ribose 5-phosph 97.4 0.0013 2.8E-08 67.0 11.8 126 481-621 3-133 (218)
21 cd01398 RPI_A RPI_A: Ribose 5- 97.3 0.0023 5E-08 64.7 11.9 126 481-621 3-133 (213)
22 PRK10434 srlR DNA-bindng trans 96.7 0.029 6.4E-07 58.0 13.3 124 479-611 77-215 (256)
23 PRK13509 transcriptional repre 96.3 0.051 1.1E-06 56.1 12.3 122 479-611 79-214 (251)
24 PRK09802 DNA-binding transcrip 96.2 0.077 1.7E-06 55.4 13.4 123 480-611 93-230 (269)
25 PF00455 DeoRC: DeoR C termina 96.2 0.081 1.7E-06 51.1 12.4 124 479-611 5-143 (161)
26 PRK10411 DNA-binding transcrip 95.8 0.15 3.3E-06 52.4 12.9 122 479-610 79-215 (240)
27 PLN02384 ribose-5-phosphate is 95.2 0.37 8.1E-06 50.7 13.7 127 482-621 38-170 (264)
28 COG1349 GlpR Transcriptional r 95.0 0.45 9.8E-06 49.3 13.6 124 479-612 77-216 (253)
29 PRK10906 DNA-binding transcrip 95.0 0.26 5.6E-06 51.1 11.6 124 479-611 77-215 (252)
30 PRK13978 ribose-5-phosphate is 94.5 0.71 1.5E-05 47.7 13.2 126 480-621 8-140 (228)
31 PRK10681 DNA-binding transcrip 93.9 0.94 2E-05 46.8 13.0 122 480-610 79-215 (252)
32 COG0120 RpiA Ribose 5-phosphat 90.0 4.6 0.0001 41.9 12.2 128 480-620 7-136 (227)
33 PF02254 TrkA_N: TrkA-N domain 86.5 3.6 7.8E-05 36.4 8.0 95 497-608 1-102 (116)
34 PRK04311 selenocysteine syntha 83.2 26 0.00057 39.8 14.6 114 485-602 134-257 (464)
35 KOG0259 Tyrosine aminotransfer 82.7 10 0.00022 42.3 10.6 117 478-600 107-237 (447)
36 cd01989 STK_N The N-terminal d 82.1 15 0.00032 33.5 10.2 60 540-602 74-144 (146)
37 PF01073 3Beta_HSD: 3-beta hyd 82.0 4.6 0.0001 42.3 7.6 106 499-607 2-119 (280)
38 cd00293 USP_Like Usp: Universa 80.2 36 0.00078 29.1 11.5 89 509-601 19-130 (130)
39 PRK10886 DnaA initiator-associ 79.5 62 0.0013 32.7 14.3 98 482-604 29-145 (196)
40 TIGR00474 selA seryl-tRNA(sec) 78.5 63 0.0014 36.6 15.6 114 485-602 129-252 (454)
41 TIGR01437 selA_rel uncharacter 77.8 25 0.00055 38.0 11.8 137 457-600 26-184 (363)
42 PF03853 YjeF_N: YjeF-related 77.7 38 0.00083 32.9 12.0 123 476-601 5-137 (169)
43 PRK05973 replicative DNA helic 77.7 24 0.00051 36.8 11.0 115 490-608 60-196 (237)
44 cd01424 MGS_CPS_II Methylglyox 76.5 23 0.00051 31.6 9.4 96 494-605 1-105 (110)
45 PRK01438 murD UDP-N-acetylmura 76.2 13 0.00028 41.5 9.3 72 493-569 15-86 (480)
46 COG0426 FpaA Uncharacterized f 76.0 42 0.0009 37.6 12.9 140 463-606 183-340 (388)
47 PRK14106 murD UDP-N-acetylmura 75.5 20 0.00044 39.4 10.5 94 493-600 4-97 (450)
48 cd00532 MGS-like MGS-like doma 73.8 44 0.00096 30.2 10.5 86 507-607 15-111 (112)
49 PRK11557 putative DNA-binding 73.7 51 0.0011 34.0 12.3 58 527-584 185-244 (278)
50 COG1737 RpiR Transcriptional r 72.8 78 0.0017 33.3 13.6 111 461-604 97-213 (281)
51 KOG3075 Ribose 5-phosphate iso 72.6 27 0.00058 37.0 9.8 118 481-609 29-150 (261)
52 PRK00414 gmhA phosphoheptose i 72.0 88 0.0019 31.1 13.1 38 560-604 110-147 (192)
53 PLN02651 cysteine desulfurase 71.9 69 0.0015 34.2 13.2 102 493-600 60-173 (364)
54 TIGR00273 iron-sulfur cluster- 71.6 42 0.00091 37.9 11.8 51 561-612 181-232 (432)
55 PRK02947 hypothetical protein; 71.1 1.3E+02 0.0028 31.1 14.5 38 531-568 120-168 (246)
56 PF02142 MGS: MGS-like domain 70.2 11 0.00024 33.1 5.6 78 507-599 3-94 (95)
57 PRK11337 DNA-binding transcrip 69.4 68 0.0015 33.4 12.2 47 522-568 192-238 (292)
58 PRK07582 cystathionine gamma-l 68.6 54 0.0012 35.6 11.6 96 493-600 65-167 (366)
59 PLN03209 translocon at the inn 68.5 18 0.0004 42.2 8.4 110 492-604 78-208 (576)
60 cd06451 AGAT_like Alanine-glyo 68.5 69 0.0015 33.7 12.2 100 495-601 51-160 (356)
61 TIGR03127 RuMP_HxlB 6-phospho 68.4 56 0.0012 31.5 10.6 37 533-569 88-124 (179)
62 PRK08134 O-acetylhomoserine am 68.2 60 0.0013 36.4 12.2 94 495-600 81-184 (433)
63 PRK00025 lpxB lipid-A-disaccha 67.8 59 0.0013 34.5 11.6 93 494-603 186-288 (380)
64 PF10087 DUF2325: Uncharacteri 67.8 29 0.00063 30.6 7.8 72 522-601 2-81 (97)
65 TIGR01470 cysG_Nterm siroheme 67.7 45 0.00097 33.6 10.1 94 493-603 8-102 (205)
66 PRK09496 trkA potassium transp 67.5 55 0.0012 35.9 11.6 62 488-551 199-261 (453)
67 cd01988 Na_H_Antiporter_C The 66.6 86 0.0019 27.5 10.7 60 539-601 64-131 (132)
68 PRK05613 O-acetylhomoserine am 65.9 57 0.0012 36.7 11.5 99 495-600 86-190 (437)
69 TIGR02006 IscS cysteine desulf 65.8 1.3E+02 0.0028 32.8 13.9 102 493-600 64-177 (402)
70 PRK15118 universal stress glob 65.6 74 0.0016 29.0 10.3 56 540-601 74-137 (144)
71 TIGR03235 DNA_S_dndA cysteine 65.2 1.2E+02 0.0026 32.0 13.3 102 494-600 60-173 (353)
72 cd05005 SIS_PHI Hexulose-6-pho 65.2 72 0.0016 30.8 10.7 35 533-567 91-125 (179)
73 TIGR01140 L_thr_O3P_dcar L-thr 64.9 56 0.0012 34.4 10.7 99 493-600 64-163 (330)
74 cd01987 USP_OKCHK USP domain i 64.9 85 0.0018 27.6 10.3 101 498-601 4-123 (124)
75 PRK05839 hypothetical protein; 64.5 78 0.0017 34.1 11.8 98 491-600 81-193 (374)
76 cd01423 MGS_CPS_I_III Methylgl 64.3 31 0.00067 31.2 7.5 90 496-603 3-109 (116)
77 TIGR03402 FeS_nifS cysteine de 64.0 1.2E+02 0.0027 32.3 13.2 102 493-600 59-171 (379)
78 PRK15116 sulfur acceptor prote 63.8 86 0.0019 33.3 11.6 117 482-609 19-161 (268)
79 PRK08248 O-acetylhomoserine am 62.8 59 0.0013 36.4 10.8 100 494-601 80-185 (431)
80 PF00535 Glycos_transf_2: Glyc 62.7 22 0.00048 31.5 6.2 81 496-576 3-94 (169)
81 cd06454 KBL_like KBL_like; thi 62.7 71 0.0015 33.2 10.8 105 488-601 56-168 (349)
82 PTZ00433 tyrosine aminotransfe 62.5 76 0.0017 34.6 11.4 96 491-600 102-215 (412)
83 PF05159 Capsule_synth: Capsul 62.4 36 0.00079 35.0 8.5 93 496-605 131-228 (269)
84 PRK08133 O-succinylhomoserine 62.1 1.2E+02 0.0025 33.4 12.7 94 495-600 78-181 (390)
85 PF04016 DUF364: Domain of unk 62.0 14 0.00029 35.6 4.9 100 491-614 8-107 (147)
86 PRK01710 murD UDP-N-acetylmura 61.8 68 0.0015 35.8 11.1 92 494-599 14-105 (458)
87 cd03466 Nitrogenase_NifN_2 Nit 60.7 2.7E+02 0.0057 31.2 15.4 96 493-602 299-397 (429)
88 cd04235 AAK_CK AAK_CK: Carbama 60.5 1.2E+02 0.0026 32.9 12.2 50 553-602 172-229 (308)
89 PRK09932 glycerate kinase II; 60.4 11 0.00025 41.8 4.6 63 532-608 267-329 (381)
90 KOG1467 Translation initiation 59.7 8.9 0.00019 43.7 3.6 29 185-213 116-144 (556)
91 TIGR01329 cysta_beta_ly_E cyst 59.5 1.2E+02 0.0026 33.1 12.3 99 495-601 64-167 (378)
92 PRK08574 cystathionine gamma-s 59.0 1E+02 0.0022 33.8 11.6 97 495-600 70-172 (385)
93 PRK07810 O-succinylhomoserine 58.9 1.6E+02 0.0035 32.5 13.3 98 495-600 87-190 (403)
94 PF00582 Usp: Universal stress 58.7 1.2E+02 0.0025 26.0 10.5 38 561-601 102-139 (140)
95 PRK07865 N-succinyldiaminopime 58.5 64 0.0014 34.4 9.8 95 491-600 84-186 (364)
96 PLN02206 UDP-glucuronate decar 58.5 43 0.00094 37.5 8.8 109 493-605 118-235 (442)
97 TIGR01326 OAH_OAS_sulfhy OAH/O 57.9 94 0.002 34.4 11.2 98 495-601 74-178 (418)
98 PLN02409 serine--glyoxylate am 57.8 74 0.0016 34.8 10.3 96 497-600 64-174 (401)
99 PRK15482 transcriptional regul 57.7 1.3E+02 0.0027 31.4 11.6 42 527-568 192-233 (285)
100 PLN02260 probable rhamnose bio 57.2 45 0.00098 39.0 9.0 89 518-607 379-485 (668)
101 PRK12454 carbamate kinase-like 57.1 1.4E+02 0.003 32.6 12.0 49 553-601 176-232 (313)
102 cd00614 CGS_like CGS_like: Cys 56.8 82 0.0018 34.0 10.3 97 495-600 57-160 (369)
103 smart00851 MGS MGS-like domain 56.8 92 0.002 26.9 8.8 77 509-599 5-89 (90)
104 cd01974 Nitrogenase_MoFe_beta 56.6 3.3E+02 0.0071 30.5 16.3 94 493-602 302-402 (435)
105 CHL00194 ycf39 Ycf39; Provisio 56.6 68 0.0015 33.6 9.5 102 496-604 2-110 (317)
106 PRK05958 8-amino-7-oxononanoat 56.4 2.5E+02 0.0055 29.5 13.8 101 490-600 96-203 (385)
107 PF00148 Oxidored_nitro: Nitro 56.3 3E+02 0.0064 29.9 15.3 106 480-603 259-367 (398)
108 PF01113 DapB_N: Dihydrodipico 56.0 23 0.0005 32.6 5.2 96 496-605 2-101 (124)
109 PRK06702 O-acetylhomoserine am 55.6 1.5E+02 0.0032 33.5 12.4 95 495-600 78-182 (432)
110 CHL00144 odpB pyruvate dehydro 55.5 67 0.0014 34.8 9.3 70 535-609 218-299 (327)
111 PRK05234 mgsA methylglyoxal sy 55.0 81 0.0018 30.3 8.9 89 506-605 19-116 (142)
112 PLN02778 3,5-epimerase/4-reduc 54.8 56 0.0012 34.3 8.4 26 579-604 86-111 (298)
113 TIGR01325 O_suc_HS_sulf O-succ 54.7 1.5E+02 0.0032 32.4 11.9 97 495-600 71-174 (380)
114 PLN02656 tyrosine transaminase 54.7 1.8E+02 0.0038 31.9 12.6 97 491-600 94-207 (409)
115 PRK10892 D-arabinose 5-phospha 54.5 2.7E+02 0.0059 29.4 13.7 63 536-605 65-131 (326)
116 COG1929 Glycerate kinase [Carb 54.5 15 0.00033 40.5 4.3 52 555-608 278-329 (378)
117 cd00287 ribokinase_pfkB_like r 53.7 41 0.00089 31.8 6.7 69 517-602 23-91 (196)
118 PF05368 NmrA: NmrA-like famil 53.7 82 0.0018 31.1 9.1 99 497-604 1-103 (233)
119 PRK06234 methionine gamma-lyas 53.7 1.2E+02 0.0026 33.4 11.2 98 495-600 81-186 (400)
120 PLN02214 cinnamoyl-CoA reducta 53.4 1.1E+02 0.0023 32.6 10.5 109 493-603 9-126 (342)
121 PF01488 Shikimate_DH: Shikima 53.4 71 0.0015 29.7 8.1 73 493-569 11-83 (135)
122 TIGR00045 glycerate kinase. Th 53.4 16 0.00036 40.5 4.4 51 556-608 278-328 (375)
123 TIGR03392 FeS_syn_CsdA cystein 53.3 2.5E+02 0.0055 30.2 13.4 101 494-600 79-192 (398)
124 PRK09331 Sep-tRNA:Cys-tRNA syn 53.2 1.4E+02 0.0031 32.3 11.5 15 586-600 179-193 (387)
125 COG4635 HemG Flavodoxin [Energ 53.0 13 0.00029 36.9 3.2 66 534-601 19-85 (175)
126 PRK12320 hypothetical protein; 52.9 51 0.0011 39.6 8.6 99 496-604 2-103 (699)
127 PRK13938 phosphoheptose isomer 52.7 2.6E+02 0.0056 28.2 13.3 37 531-567 127-163 (196)
128 PRK07568 aspartate aminotransf 52.5 1.6E+02 0.0034 31.7 11.6 95 492-600 87-200 (397)
129 PRK05749 3-deoxy-D-manno-octul 52.4 97 0.0021 33.7 10.1 96 493-602 49-154 (425)
130 TIGR03499 FlhF flagellar biosy 52.4 3.1E+02 0.0066 28.9 14.7 77 491-567 191-278 (282)
131 PRK14852 hypothetical protein; 52.2 1.6E+02 0.0035 36.8 12.7 130 465-603 304-457 (989)
132 cd01494 AAT_I Aspartate aminot 51.9 1.8E+02 0.0039 26.1 11.1 101 492-601 16-128 (170)
133 PRK13520 L-tyrosine decarboxyl 51.7 2.6E+02 0.0057 29.4 13.0 100 494-600 77-186 (371)
134 COG1104 NifS Cysteine sulfinat 51.6 1.2E+02 0.0026 34.0 10.7 100 492-600 60-176 (386)
135 PRK15005 universal stress prot 51.5 1.4E+02 0.003 27.0 9.5 36 561-601 107-143 (144)
136 PRK10342 glycerate kinase I; P 51.2 20 0.00043 40.0 4.6 63 532-608 267-329 (381)
137 PRK08861 cystathionine gamma-s 51.2 1.3E+02 0.0028 33.3 10.8 98 495-600 70-173 (388)
138 PRK09028 cystathionine beta-ly 51.0 1.7E+02 0.0036 32.6 11.7 94 495-600 78-181 (394)
139 PRK07812 O-acetylhomoserine am 50.7 1.7E+02 0.0037 32.9 11.9 98 496-601 87-191 (436)
140 PRK08056 threonine-phosphate d 50.6 1.8E+02 0.0038 31.1 11.5 94 491-600 70-180 (356)
141 PRK12475 thiamine/molybdopteri 50.0 1.6E+02 0.0034 32.1 11.2 109 482-601 13-147 (338)
142 PRK08249 cystathionine gamma-s 49.9 1.8E+02 0.0038 32.2 11.7 98 495-600 81-184 (398)
143 COG0451 WcaG Nucleoside-diphos 49.8 52 0.0011 33.4 7.2 101 497-604 3-116 (314)
144 PRK14012 cysteine desulfurase; 49.7 3.7E+02 0.0081 29.1 15.0 101 495-600 68-179 (404)
145 PRK07309 aromatic amino acid a 49.4 1.2E+02 0.0025 32.9 10.1 101 493-600 91-204 (391)
146 TIGR03539 DapC_actino succinyl 48.8 1.3E+02 0.0027 32.2 10.1 94 491-600 78-180 (357)
147 PRK05764 aspartate aminotransf 48.7 1.9E+02 0.0041 30.9 11.5 96 491-600 89-202 (393)
148 cd08769 DAP_dppA_2 Peptidase M 48.7 42 0.00091 35.8 6.3 39 570-610 124-162 (270)
149 COG1091 RfbD dTDP-4-dehydrorha 48.5 57 0.0012 35.0 7.3 96 497-611 3-108 (281)
150 PRK13479 2-aminoethylphosphona 48.5 2.7E+02 0.0058 29.5 12.5 99 495-601 57-167 (368)
151 PRK05968 hypothetical protein; 48.3 2.3E+02 0.005 31.1 12.2 99 495-601 80-183 (389)
152 KOG3349 Predicted glycosyltran 48.2 28 0.00061 34.5 4.5 54 488-545 75-128 (170)
153 TIGR01328 met_gam_lyase methio 48.2 2.1E+02 0.0045 31.5 11.9 98 495-600 76-179 (391)
154 TIGR03538 DapC_gpp succinyldia 47.9 1.7E+02 0.0038 31.5 11.1 93 495-599 92-202 (393)
155 PF00266 Aminotran_5: Aminotra 47.9 1.8E+02 0.004 30.9 11.2 101 494-600 62-174 (371)
156 TIGR02429 pcaI_scoA_fam 3-oxoa 47.5 1.4E+02 0.0031 30.7 9.9 97 486-601 11-122 (222)
157 KOG1000 Chromatin remodeling p 47.2 5.5E+02 0.012 30.4 15.4 75 493-567 491-568 (689)
158 cd00609 AAT_like Aspartate ami 47.1 1.2E+02 0.0026 31.0 9.3 102 493-601 59-171 (350)
159 PRK05939 hypothetical protein; 46.8 2.1E+02 0.0045 31.7 11.7 94 495-600 64-166 (397)
160 TIGR02371 ala_DH_arch alanine 46.8 1.3E+02 0.0029 32.3 9.9 98 486-586 118-225 (325)
161 PRK08462 biotin carboxylase; V 46.8 41 0.00089 37.3 6.3 80 495-576 5-91 (445)
162 PF04392 ABC_sub_bind: ABC tra 46.5 18 0.0004 37.7 3.3 41 558-605 181-221 (294)
163 cd06453 SufS_like Cysteine des 46.4 3.4E+02 0.0074 28.7 12.9 101 495-601 63-175 (373)
164 cd00615 Orn_deC_like Ornithine 46.3 2.5E+02 0.0054 29.2 11.7 96 495-601 76-189 (294)
165 TIGR03590 PseG pseudaminic aci 46.3 2E+02 0.0044 30.0 11.0 91 495-603 172-268 (279)
166 TIGR03458 YgfH_subfam succinat 46.0 1.7E+02 0.0037 33.7 11.1 115 485-600 6-154 (485)
167 TIGR03537 DapC succinyldiamino 46.0 2E+02 0.0044 30.4 11.1 98 491-600 57-174 (350)
168 TIGR01324 cysta_beta_ly_B cyst 45.9 2.3E+02 0.0049 31.2 11.7 94 495-600 67-170 (377)
169 TIGR00858 bioF 8-amino-7-oxono 45.8 2.2E+02 0.0048 29.5 11.2 93 495-600 78-181 (360)
170 PRK08175 aminotransferase; Val 45.7 54 0.0012 35.5 6.8 92 495-600 93-202 (395)
171 PRK08045 cystathionine gamma-s 45.7 2.5E+02 0.0054 30.9 12.0 94 495-600 69-172 (386)
172 PRK03369 murD UDP-N-acetylmura 45.6 1.3E+02 0.0028 34.2 10.0 91 491-600 9-99 (488)
173 PRK07504 O-succinylhomoserine 45.5 2.4E+02 0.0052 31.1 11.9 74 521-600 106-185 (398)
174 PF02595 Gly_kinase: Glycerate 45.3 14 0.00031 41.0 2.3 53 555-609 278-330 (377)
175 PRK07324 transaminase; Validat 45.3 1.7E+02 0.0036 31.6 10.5 103 491-600 78-191 (373)
176 PRK13566 anthranilate synthase 45.2 76 0.0016 38.2 8.4 80 516-602 523-605 (720)
177 PRK05678 succinyl-CoA syntheta 45.0 1.6E+02 0.0036 31.5 10.2 103 495-599 67-173 (291)
178 TIGR03576 pyridox_MJ0158 pyrid 44.5 4.4E+02 0.0096 28.5 15.4 134 458-600 36-173 (346)
179 PF02844 GARS_N: Phosphoribosy 44.4 63 0.0014 29.5 6.0 83 496-599 2-90 (100)
180 PRK11302 DNA-binding transcrip 44.1 3.3E+02 0.0072 27.9 12.1 46 522-568 180-225 (284)
181 PRK07503 methionine gamma-lyas 44.1 2.6E+02 0.0056 30.9 11.9 98 496-601 83-186 (403)
182 PRK09288 purT phosphoribosylgl 43.9 37 0.00079 36.7 5.2 72 494-572 12-86 (395)
183 TIGR00853 pts-lac PTS system, 43.9 85 0.0018 28.0 6.7 77 495-602 4-82 (95)
184 PLN02683 pyruvate dehydrogenas 43.5 1.2E+02 0.0025 33.4 9.0 62 537-603 247-320 (356)
185 PRK07683 aminotransferase A; V 43.3 2.6E+02 0.0056 30.2 11.6 93 495-600 91-199 (387)
186 PLN02242 methionine gamma-lyas 43.2 2E+02 0.0044 32.0 11.0 99 495-600 93-198 (418)
187 cd06436 GlcNAc-1-P_transferase 42.9 83 0.0018 30.2 7.0 6 547-552 92-97 (191)
188 PF04321 RmlD_sub_bind: RmlD s 42.6 35 0.00075 35.7 4.6 97 496-610 2-108 (286)
189 PRK05967 cystathionine beta-ly 42.6 2.5E+02 0.0055 31.3 11.5 98 495-600 81-184 (395)
190 PF03709 OKR_DC_1_N: Orn/Lys/A 42.5 41 0.00089 30.7 4.5 67 534-605 7-77 (115)
191 PRK10116 universal stress prot 42.5 2.6E+02 0.0056 25.2 10.6 36 561-601 102-137 (142)
192 PRK06108 aspartate aminotransf 42.3 2.6E+02 0.0057 29.6 11.3 96 491-600 82-196 (382)
193 PRK05749 3-deoxy-D-manno-octul 42.1 1.2E+02 0.0025 33.1 8.8 76 517-602 260-351 (425)
194 COG2057 AtoA Acyl CoA:acetate/ 42.1 32 0.0007 35.8 4.1 118 479-604 7-148 (225)
195 PRK07050 cystathionine beta-ly 42.1 3.4E+02 0.0073 30.0 12.3 99 495-600 82-185 (394)
196 PRK07178 pyruvate carboxylase 42.1 55 0.0012 36.9 6.4 80 496-575 4-87 (472)
197 cd05006 SIS_GmhA Phosphoheptos 42.0 3.2E+02 0.007 26.2 11.5 44 526-569 110-153 (177)
198 PRK05414 urocanate hydratase; 41.8 1.3E+02 0.0028 35.0 9.1 89 411-503 214-326 (556)
199 TIGR00639 PurN phosphoribosylg 41.3 1.4E+02 0.003 29.9 8.5 75 496-573 4-92 (190)
200 PF06574 FAD_syn: FAD syntheta 41.3 2.9E+02 0.0062 26.8 10.4 105 494-602 5-144 (157)
201 PRK06225 aspartate aminotransf 41.3 2.5E+02 0.0054 30.1 11.0 96 492-601 82-196 (380)
202 cd06450 DOPA_deC_like DOPA dec 41.2 4.3E+02 0.0094 27.4 12.7 101 494-601 58-184 (345)
203 PRK00247 putative inner membra 41.2 96 0.0021 35.2 8.0 16 193-208 328-343 (429)
204 COG0794 GutQ Predicted sugar p 41.0 3.1E+02 0.0068 28.2 10.9 96 464-567 16-136 (202)
205 PRK14101 bifunctional glucokin 40.9 2.7E+02 0.0059 32.8 12.0 45 522-567 520-564 (638)
206 KOG1430 C-3 sterol dehydrogena 40.6 2.2E+02 0.0048 31.7 10.5 109 494-606 4-128 (361)
207 TIGR01228 hutU urocanate hydra 40.6 1.4E+02 0.0031 34.6 9.2 88 412-503 206-317 (545)
208 PF04951 Peptidase_M55: D-amin 40.3 42 0.00092 35.6 4.8 40 570-611 124-163 (265)
209 PRK07049 methionine gamma-lyas 40.3 3.4E+02 0.0074 30.3 12.2 55 494-552 99-155 (427)
210 cd01972 Nitrogenase_VnfE_like 40.3 4.7E+02 0.01 29.2 13.2 95 493-601 292-399 (426)
211 TIGR02326 transamin_PhnW 2-ami 40.1 3.9E+02 0.0085 28.3 12.2 98 496-600 57-164 (363)
212 PRK06836 aspartate aminotransf 40.1 3.4E+02 0.0073 29.4 11.9 55 491-551 94-148 (394)
213 PRK00048 dihydrodipicolinate r 39.9 1.2E+02 0.0026 31.5 8.1 87 496-601 3-90 (257)
214 PRK09590 celB cellobiose phosp 39.8 1.1E+02 0.0024 27.9 6.9 76 496-602 3-82 (104)
215 PRK13789 phosphoribosylamine-- 39.7 50 0.0011 36.9 5.6 77 495-576 5-83 (426)
216 PF08032 SpoU_sub_bind: RNA 2' 39.6 86 0.0019 25.7 5.7 53 508-560 6-59 (76)
217 cd00757 ThiF_MoeB_HesA_family 39.6 2.1E+02 0.0045 29.0 9.6 108 483-601 11-142 (228)
218 PRK05957 aspartate aminotransf 39.6 3.1E+02 0.0067 29.7 11.5 93 494-600 90-198 (389)
219 PRK12767 carbamoyl phosphate s 39.6 41 0.00088 35.2 4.6 41 496-537 3-43 (326)
220 cd03822 GT1_ecORF704_like This 39.5 2.3E+02 0.005 28.6 9.9 100 493-601 184-299 (366)
221 cd01973 Nitrogenase_VFe_beta_l 39.4 6.2E+02 0.013 28.8 14.8 143 433-605 258-410 (454)
222 PRK10310 PTS system galactitol 39.4 1.1E+02 0.0024 27.1 6.7 54 496-570 4-59 (94)
223 PRK05562 precorrin-2 dehydroge 39.3 2.2E+02 0.0047 29.6 9.7 96 493-604 24-119 (223)
224 TIGR02356 adenyl_thiF thiazole 39.2 2.8E+02 0.006 27.7 10.3 109 483-602 11-143 (202)
225 PRK02910 light-independent pro 39.1 6.6E+02 0.014 29.0 16.3 92 493-602 292-387 (519)
226 PRK08618 ornithine cyclodeamin 39.1 2.3E+02 0.005 30.4 10.3 91 493-586 126-224 (325)
227 PF13580 SIS_2: SIS domain; PD 38.8 62 0.0013 30.3 5.2 28 491-518 101-131 (138)
228 PRK08912 hypothetical protein; 38.8 4E+02 0.0086 28.6 12.1 92 495-600 89-197 (387)
229 PRK07811 cystathionine gamma-s 38.7 2.2E+02 0.0047 31.3 10.2 75 521-601 102-182 (388)
230 TIGR01977 am_tr_V_EF2568 cyste 38.7 5E+02 0.011 27.4 13.9 98 495-600 64-172 (376)
231 PF08659 KR: KR domain; Inter 38.5 3E+02 0.0066 26.5 10.2 108 496-605 3-137 (181)
232 PRK08558 adenine phosphoribosy 38.5 2.4E+02 0.0051 29.4 9.9 113 482-602 98-235 (238)
233 TIGR01019 sucCoAalpha succinyl 38.4 2.3E+02 0.0051 30.3 10.1 103 495-599 65-171 (286)
234 PRK08960 hypothetical protein; 38.3 2.6E+02 0.0057 30.1 10.7 96 491-600 90-203 (387)
235 PRK09147 succinyldiaminopimela 38.2 2.7E+02 0.0059 30.0 10.8 94 495-600 92-204 (396)
236 PLN02331 phosphoribosylglycina 38.2 1.6E+02 0.0035 30.0 8.5 74 496-573 3-91 (207)
237 TIGR02080 O_succ_thio_ly O-suc 38.1 2.4E+02 0.0052 31.0 10.4 98 495-600 68-171 (382)
238 PLN00145 tyrosine/nicotianamin 38.1 2E+02 0.0044 31.9 10.0 96 491-600 115-228 (430)
239 PRK13527 glutamine amidotransf 38.1 79 0.0017 31.3 6.2 83 520-607 3-89 (200)
240 PRK07765 para-aminobenzoate sy 38.0 1.6E+02 0.0035 29.8 8.4 78 521-605 2-86 (214)
241 PLN02166 dTDP-glucose 4,6-dehy 38.0 1.5E+02 0.0032 33.3 8.9 107 494-604 120-235 (436)
242 PRK06939 2-amino-3-ketobutyrat 37.9 1.4E+02 0.003 31.7 8.4 29 576-605 181-213 (397)
243 PTZ00187 succinyl-CoA syntheta 37.9 1.5E+02 0.0033 32.3 8.7 102 495-600 90-198 (317)
244 PRK06348 aspartate aminotransf 37.8 2.8E+02 0.0061 29.8 10.8 96 491-600 87-200 (384)
245 PLN02187 rooty/superroot1 37.7 3.8E+02 0.0082 30.2 12.1 103 491-600 129-242 (462)
246 PF04413 Glycos_transf_N: 3-De 37.6 1.1E+02 0.0024 30.4 7.0 95 495-603 22-126 (186)
247 PRK07681 aspartate aminotransf 37.4 2.9E+02 0.0063 29.9 10.9 100 494-600 94-204 (399)
248 cd01965 Nitrogenase_MoFe_beta_ 37.3 6.2E+02 0.013 28.1 15.4 94 493-602 298-396 (428)
249 PTZ00182 3-methyl-2-oxobutanat 37.1 1.8E+02 0.0039 32.0 9.2 66 538-608 253-330 (355)
250 PRK05647 purN phosphoribosylgl 37.1 1.4E+02 0.003 30.2 7.7 76 496-574 5-94 (200)
251 PRK08064 cystathionine beta-ly 36.9 4.5E+02 0.0098 28.8 12.3 97 495-600 71-173 (390)
252 PRK10481 hypothetical protein; 36.9 2.2E+02 0.0047 29.7 9.2 86 509-600 121-211 (224)
253 PRK02705 murD UDP-N-acetylmura 36.8 2.1E+02 0.0045 31.7 9.8 67 499-569 7-76 (459)
254 COG0771 MurD UDP-N-acetylmuram 36.7 1.2E+02 0.0026 34.7 7.9 91 494-599 7-97 (448)
255 TIGR01133 murG undecaprenyldip 36.6 3.1E+02 0.0066 28.4 10.5 92 494-602 179-277 (348)
256 COG2014 Uncharacterized conser 36.5 60 0.0013 33.9 5.0 96 487-610 106-205 (250)
257 TIGR01264 tyr_amTase_E tyrosin 36.4 3E+02 0.0065 29.8 10.8 96 491-600 93-206 (401)
258 PLN02828 formyltetrahydrofolat 36.4 1.4E+02 0.0031 31.8 8.0 120 495-617 73-217 (268)
259 PLN02735 carbamoyl-phosphate s 36.4 2.2E+02 0.0048 36.0 10.9 98 494-606 973-1079(1102)
260 cd00611 PSAT_like Phosphoserin 36.3 4E+02 0.0087 28.6 11.6 94 494-600 63-168 (355)
261 PRK11892 pyruvate dehydrogenas 36.3 2E+02 0.0044 32.9 9.7 69 535-608 357-437 (464)
262 PRK15029 arginine decarboxylas 36.3 1.4E+02 0.0029 36.4 8.7 89 521-612 2-102 (755)
263 PLN00143 tyrosine/nicotianamin 36.2 4.1E+02 0.0088 29.1 11.8 108 479-600 79-208 (409)
264 TIGR01979 sufS cysteine desulf 35.9 5.8E+02 0.013 27.4 15.0 102 494-601 81-195 (403)
265 PRK08591 acetyl-CoA carboxylas 35.8 72 0.0015 35.4 6.0 79 496-576 4-89 (451)
266 PRK06084 O-acetylhomoserine am 35.7 2.6E+02 0.0057 31.2 10.4 97 496-600 76-178 (425)
267 COG1648 CysG Siroheme synthase 35.7 1.6E+02 0.0036 30.0 8.1 95 493-603 11-105 (210)
268 TIGR01825 gly_Cac_T_rel pyrido 35.6 3.3E+02 0.0071 28.9 10.8 16 585-600 183-198 (385)
269 cd05564 PTS_IIB_chitobiose_lic 35.6 1.2E+02 0.0025 27.0 6.2 74 497-601 2-77 (96)
270 cd01980 Chlide_reductase_Y Chl 35.6 4.9E+02 0.011 29.0 12.4 112 470-603 260-376 (416)
271 PRK08762 molybdopterin biosynt 35.4 4.8E+02 0.01 28.6 12.2 109 483-602 125-257 (376)
272 PLN02591 tryptophan synthase 35.3 4.1E+02 0.0088 28.0 11.1 102 495-601 81-195 (250)
273 PRK05784 phosphoribosylamine-- 35.1 48 0.001 37.9 4.6 77 496-573 2-81 (486)
274 TIGR01142 purT phosphoribosylg 34.9 92 0.002 33.5 6.5 71 496-573 1-74 (380)
275 PLN02695 GDP-D-mannose-3',5'-e 34.9 1.8E+02 0.004 31.4 8.8 108 489-604 16-137 (370)
276 PRK10537 voltage-gated potassi 34.9 6.9E+02 0.015 28.0 13.4 95 494-607 240-341 (393)
277 PRK05443 polyphosphate kinase; 34.8 1E+02 0.0022 37.0 7.3 53 500-552 376-430 (691)
278 cd01491 Ube1_repeat1 Ubiquitin 34.7 2.4E+02 0.0052 30.3 9.5 109 483-602 9-137 (286)
279 TIGR03609 S_layer_CsaB polysac 34.7 1.1E+02 0.0024 31.7 6.9 81 518-605 27-109 (298)
280 PRK12414 putative aminotransfe 34.6 2.5E+02 0.0055 30.2 9.8 93 494-600 91-200 (384)
281 cd03807 GT1_WbnK_like This fam 34.4 4.6E+02 0.0099 26.0 11.0 96 495-601 194-298 (365)
282 cd00956 Transaldolase_FSA Tran 34.4 5.1E+02 0.011 26.3 11.7 97 503-606 60-166 (211)
283 PRK02472 murD UDP-N-acetylmura 34.3 2.8E+02 0.0061 30.5 10.3 91 494-599 5-96 (447)
284 PRK08361 aspartate aminotransf 34.3 4.4E+02 0.0096 28.4 11.6 103 491-600 91-204 (391)
285 PF01175 Urocanase: Urocanase; 34.2 1.7E+02 0.0037 34.1 8.6 114 412-529 205-360 (546)
286 PRK07550 hypothetical protein; 34.1 4.2E+02 0.0091 28.4 11.4 103 491-600 88-201 (386)
287 PRK09191 two-component respons 34.1 3.4E+02 0.0074 26.9 10.0 94 503-603 118-218 (261)
288 PF13241 NAD_binding_7: Putati 34.1 74 0.0016 28.3 4.7 87 493-602 6-92 (103)
289 PRK10874 cysteine sulfinate de 33.9 6.3E+02 0.014 27.2 16.3 101 494-600 82-195 (401)
290 PRK00421 murC UDP-N-acetylmura 33.6 2E+02 0.0044 32.1 9.1 89 493-600 6-95 (461)
291 PRK07366 succinyldiaminopimela 33.6 3.9E+02 0.0084 28.7 11.0 95 495-599 94-202 (388)
292 PRK03244 argD acetylornithine 33.3 5.8E+02 0.013 27.5 12.3 101 495-600 105-222 (398)
293 PRK05942 aspartate aminotransf 33.2 3.9E+02 0.0084 28.9 11.0 92 495-600 99-208 (394)
294 PRK08644 thiamine biosynthesis 33.2 4.9E+02 0.011 26.3 11.0 110 482-602 17-150 (212)
295 PRK06141 ornithine cyclodeamin 33.1 3.3E+02 0.0072 29.1 10.3 91 493-586 124-222 (314)
296 PRK07688 thiamine/molybdopteri 32.9 4.8E+02 0.01 28.4 11.6 110 482-602 13-148 (339)
297 TIGR03693 ocin_ThiF_like putat 32.9 6.4E+02 0.014 30.3 13.0 100 493-600 128-236 (637)
298 PRK05690 molybdopterin biosynt 32.8 5.7E+02 0.012 26.4 12.2 110 482-601 21-153 (245)
299 TIGR01426 MGT glycosyltransfer 32.7 1.3E+02 0.0027 32.4 7.1 32 568-605 92-123 (392)
300 PRK15456 universal stress prot 32.6 1.3E+02 0.0028 27.4 6.2 37 561-601 105-141 (142)
301 PRK03803 murD UDP-N-acetylmura 32.5 2.4E+02 0.0052 31.3 9.4 91 492-599 4-96 (448)
302 PRK08114 cystathionine beta-ly 32.2 4.2E+02 0.009 29.6 11.2 99 492-600 75-184 (395)
303 PRK11543 gutQ D-arabinose 5-ph 32.1 6.2E+02 0.013 26.6 12.1 38 531-568 103-140 (321)
304 TIGR03589 PseB UDP-N-acetylglu 32.1 2.7E+02 0.0058 29.4 9.3 109 493-604 3-125 (324)
305 PRK05994 O-acetylhomoserine am 32.0 4.9E+02 0.011 29.0 11.8 97 496-600 81-183 (427)
306 COG0100 RpsK Ribosomal protein 31.8 1.4E+02 0.003 28.7 6.3 44 506-552 67-112 (129)
307 cd02525 Succinoglycan_BP_ExoA 31.7 1.5E+02 0.0034 28.6 7.0 8 520-527 32-39 (249)
308 PLN00175 aminotransferase fami 31.7 5.7E+02 0.012 28.1 12.1 92 495-600 117-225 (413)
309 cd05212 NAD_bind_m-THF_DH_Cycl 31.6 2E+02 0.0043 27.6 7.5 38 531-568 39-78 (140)
310 cd06433 GT_2_WfgS_like WfgS an 31.6 3.1E+02 0.0066 25.3 8.7 7 520-526 28-34 (202)
311 TIGR01214 rmlD dTDP-4-dehydror 31.6 1.4E+02 0.0029 30.3 6.8 27 579-605 76-102 (287)
312 PRK08363 alanine aminotransfer 31.6 4.2E+02 0.009 28.7 10.9 53 492-550 92-144 (398)
313 TIGR01265 tyr_nico_aTase tyros 31.4 4.1E+02 0.0089 28.9 10.9 94 493-600 96-207 (403)
314 COG0031 CysK Cysteine synthase 31.2 1.1E+02 0.0025 33.1 6.3 134 384-527 70-204 (300)
315 PLN02509 cystathionine beta-ly 31.1 5.8E+02 0.013 29.2 12.3 81 508-600 162-252 (464)
316 PRK07682 hypothetical protein; 31.0 6.1E+02 0.013 27.0 12.0 93 494-600 82-192 (378)
317 COG0074 SucD Succinyl-CoA synt 30.9 2.4E+02 0.0052 30.6 8.5 104 495-600 67-174 (293)
318 cd06452 SepCysS Sep-tRNA:Cys-t 30.8 5.7E+02 0.012 27.2 11.6 98 494-601 60-175 (361)
319 PRK02948 cysteine desulfurase; 30.8 6.8E+02 0.015 26.7 14.4 103 493-600 60-173 (381)
320 PF02302 PTS_IIB: PTS system, 30.8 1.1E+02 0.0024 25.8 5.2 35 538-572 22-58 (90)
321 PRK08506 replicative DNA helic 30.8 3E+02 0.0066 31.3 10.0 38 492-529 190-232 (472)
322 cd01483 E1_enzyme_family Super 30.7 3.7E+02 0.0079 24.8 9.0 98 497-604 2-123 (143)
323 cd00613 GDC-P Glycine cleavage 30.7 6.9E+02 0.015 26.7 12.9 99 495-600 83-194 (398)
324 COG0279 GmhA Phosphoheptose is 30.6 5.8E+02 0.013 25.8 12.4 38 492-531 108-148 (176)
325 PRK12655 fructose-6-phosphate 30.6 4.9E+02 0.011 26.9 10.6 97 503-606 62-168 (220)
326 cd05013 SIS_RpiR RpiR-like pro 30.5 3.8E+02 0.0082 23.6 9.2 88 485-603 4-95 (139)
327 COG0381 WecB UDP-N-acetylgluco 30.3 82 0.0018 35.3 5.2 112 496-611 5-133 (383)
328 PRK08636 aspartate aminotransf 30.3 5.4E+02 0.012 27.9 11.6 99 495-600 97-213 (403)
329 PRK08247 cystathionine gamma-s 30.2 6.9E+02 0.015 27.0 12.3 96 496-605 70-175 (366)
330 COG0855 Ppk Polyphosphate kina 30.1 1.2E+02 0.0026 36.2 6.6 46 505-551 385-433 (696)
331 TIGR03217 4OH_2_O_val_ald 4-hy 29.9 1.8E+02 0.004 31.6 7.8 59 496-554 105-166 (333)
332 PLN02662 cinnamyl-alcohol dehy 29.8 4.1E+02 0.0089 27.3 10.1 107 494-604 4-127 (322)
333 PF01408 GFO_IDH_MocA: Oxidore 29.7 3.8E+02 0.0083 23.4 9.9 87 496-600 2-91 (120)
334 PF00072 Response_reg: Respons 29.4 1.6E+02 0.0035 24.9 5.9 77 522-606 1-82 (112)
335 PF12842 DUF3819: Domain of un 29.1 5.3E+02 0.012 24.9 11.8 94 389-489 28-125 (147)
336 TIGR00441 gmhA phosphoheptose 29.0 1.3E+02 0.0028 28.7 5.8 28 488-515 74-104 (154)
337 PRK06719 precorrin-2 dehydroge 29.0 2.5E+02 0.0055 27.1 7.8 90 493-602 12-101 (157)
338 PRK06767 methionine gamma-lyas 28.9 6.4E+02 0.014 27.5 11.8 98 495-600 78-181 (386)
339 PRK09411 carbamate kinase; Rev 28.9 1.8E+02 0.0039 31.6 7.3 61 485-546 34-98 (297)
340 PRK07340 ornithine cyclodeamin 28.9 3.5E+02 0.0075 28.9 9.5 89 493-585 124-219 (304)
341 PRK15181 Vi polysaccharide bio 28.9 2.3E+02 0.0049 30.2 8.2 110 493-604 14-141 (348)
342 TIGR03812 tyr_de_CO2_Arch tyro 28.9 6.9E+02 0.015 26.3 11.8 99 493-600 76-188 (373)
343 PLN02896 cinnamyl-alcohol dehy 28.8 5.7E+02 0.012 27.0 11.2 108 493-604 9-138 (353)
344 COG0373 HemA Glutamyl-tRNA red 28.7 2.1E+02 0.0046 32.4 8.1 70 493-569 177-246 (414)
345 cd01485 E1-1_like Ubiquitin ac 28.4 5.8E+02 0.013 25.4 10.5 109 483-602 9-145 (198)
346 PRK00726 murG undecaprenyldiph 28.4 5.8E+02 0.013 26.8 11.1 93 494-603 183-280 (357)
347 PRK14851 hypothetical protein; 28.3 5.1E+02 0.011 31.2 11.6 112 483-602 33-167 (679)
348 PRK00885 phosphoribosylamine-- 28.2 1.4E+02 0.0031 32.8 6.7 70 496-572 2-73 (420)
349 PF01118 Semialdhyde_dh: Semia 28.2 1.2E+02 0.0026 27.5 5.1 108 496-614 1-109 (121)
350 PRK14478 nitrogenase molybdenu 28.2 8.2E+02 0.018 27.9 12.8 114 467-601 299-417 (475)
351 PRK07454 short chain dehydroge 28.0 4.5E+02 0.0097 25.8 9.6 74 493-569 5-91 (241)
352 TIGR01521 FruBisAldo_II_B fruc 28.0 2.1E+02 0.0045 31.8 7.7 103 494-599 15-138 (347)
353 PRK02006 murD UDP-N-acetylmura 27.9 3.5E+02 0.0076 30.6 9.9 71 494-569 7-77 (498)
354 cd05017 SIS_PGI_PMI_1 The memb 27.9 1.4E+02 0.0031 26.9 5.6 54 544-604 26-79 (119)
355 PRK04308 murD UDP-N-acetylmura 27.8 4.2E+02 0.009 29.4 10.3 89 494-599 5-95 (445)
356 PRK01362 putative translaldola 27.8 5.2E+02 0.011 26.6 10.2 98 503-606 60-166 (214)
357 PRK09136 5'-methylthioadenosin 27.8 2.8E+02 0.0061 29.0 8.4 76 498-605 127-206 (245)
358 TIGR00036 dapB dihydrodipicoli 27.7 3.6E+02 0.0077 28.2 9.2 97 496-604 3-101 (266)
359 PRK13143 hisH imidazole glycer 27.7 2.8E+02 0.0061 27.5 8.1 82 521-608 2-84 (200)
360 TIGR00746 arcC carbamate kinas 27.7 3.9E+02 0.0084 29.0 9.7 31 482-512 30-61 (310)
361 PF00411 Ribosomal_S11: Riboso 27.3 1.6E+02 0.0034 27.1 5.7 46 505-553 48-95 (110)
362 PRK06460 hypothetical protein; 27.3 7.1E+02 0.015 27.1 11.8 58 539-600 104-165 (376)
363 PRK09257 aromatic amino acid a 27.3 7.7E+02 0.017 26.6 12.0 98 497-600 98-210 (396)
364 PRK00207 sulfur transfer compl 27.1 2E+02 0.0044 26.9 6.6 73 522-606 4-83 (128)
365 PRK12342 hypothetical protein; 27.1 3.3E+02 0.0072 28.7 8.8 91 496-608 55-149 (254)
366 PRK08776 cystathionine gamma-s 27.0 8E+02 0.017 27.2 12.3 98 495-600 77-180 (405)
367 PRK00141 murD UDP-N-acetylmura 27.0 4.3E+02 0.0094 29.8 10.4 90 493-600 14-103 (473)
368 TIGR03492 conserved hypothetic 27.0 6.2E+02 0.013 28.0 11.3 34 554-602 289-322 (396)
369 cd05017 SIS_PGI_PMI_1 The memb 26.8 2.3E+02 0.0049 25.6 6.7 58 490-554 40-100 (119)
370 cd01748 GATase1_IGP_Synthase T 26.8 2E+02 0.0044 28.2 6.9 69 535-606 13-82 (198)
371 PRK09196 fructose-1,6-bisphosp 26.8 2.1E+02 0.0046 31.7 7.6 103 494-599 17-140 (347)
372 PLN02918 pyridoxine (pyridoxam 26.6 1.1E+03 0.024 27.8 16.2 96 476-576 115-217 (544)
373 PRK09212 pyruvate dehydrogenas 26.6 3.9E+02 0.0085 28.9 9.5 66 537-607 220-297 (327)
374 cd06502 TA_like Low-specificit 26.4 5.7E+02 0.012 26.4 10.5 102 493-600 47-164 (338)
375 PRK06111 acetyl-CoA carboxylas 26.4 1.2E+02 0.0027 33.4 5.9 32 496-529 4-35 (450)
376 cd00755 YgdL_like Family of ac 26.4 4.7E+02 0.01 27.1 9.7 110 485-605 3-137 (231)
377 PRK06207 aspartate aminotransf 26.3 7.8E+02 0.017 26.9 12.0 93 494-600 103-216 (405)
378 PRK05595 replicative DNA helic 26.3 4E+02 0.0087 29.9 9.9 46 561-606 311-362 (444)
379 PRK12771 putative glutamate sy 26.1 4.9E+02 0.011 30.0 10.8 77 491-569 134-230 (564)
380 KOG1549 Cysteine desulfurase N 26.1 5E+02 0.011 29.7 10.4 109 489-600 96-216 (428)
381 PRK09082 methionine aminotrans 26.1 7E+02 0.015 26.8 11.4 92 495-600 93-201 (386)
382 PRK07777 aminotransferase; Val 26.1 5.6E+02 0.012 27.5 10.7 92 495-600 87-197 (387)
383 PRK11337 DNA-binding transcrip 26.1 2.3E+02 0.005 29.5 7.5 90 485-605 131-224 (292)
384 PRK01372 ddl D-alanine--D-alan 26.1 2.3E+02 0.005 29.4 7.5 39 532-570 24-65 (304)
385 PRK00451 glycine dehydrogenase 26.0 9.1E+02 0.02 26.6 13.5 99 495-601 131-239 (447)
386 PRK13011 formyltetrahydrofolat 25.9 1.9E+02 0.0041 30.9 6.9 73 495-573 92-178 (286)
387 cd00381 IMPDH IMPDH: The catal 25.9 5E+02 0.011 28.1 10.2 48 499-550 115-162 (325)
388 PRK13937 phosphoheptose isomer 25.9 6.4E+02 0.014 24.8 12.5 36 533-568 122-157 (188)
389 PRK07878 molybdopterin biosynt 25.9 3.3E+02 0.0072 30.2 9.0 109 482-601 31-163 (392)
390 PRK14571 D-alanyl-alanine synt 25.8 1.6E+02 0.0034 30.8 6.2 61 532-600 20-84 (299)
391 PRK06425 histidinol-phosphate 25.7 1.9E+02 0.0041 30.6 6.8 92 493-600 57-160 (332)
392 PRK07269 cystathionine gamma-s 25.7 6.8E+02 0.015 27.3 11.2 97 495-600 71-171 (364)
393 PRK06015 keto-hydroxyglutarate 25.6 2.5E+02 0.0054 28.7 7.3 77 524-600 9-102 (201)
394 PRK05865 hypothetical protein; 25.6 1.5E+02 0.0032 36.7 6.6 98 496-604 2-103 (854)
395 PRK11071 esterase YqiA; Provis 25.5 4.9E+02 0.011 25.4 9.3 35 496-530 4-43 (190)
396 TIGR01822 2am3keto_CoA 2-amino 25.5 3E+02 0.0064 29.4 8.4 16 585-600 190-205 (393)
397 PRK13181 hisH imidazole glycer 25.4 1.2E+02 0.0025 30.0 5.0 70 534-606 13-83 (199)
398 TIGR01814 kynureninase kynuren 25.3 7.1E+02 0.015 27.1 11.4 16 585-600 191-206 (406)
399 TIGR03403 nifS_epsilon cystein 25.3 8.5E+02 0.018 26.0 13.9 102 493-600 60-175 (382)
400 PRK07523 gluconate 5-dehydroge 25.3 3.6E+02 0.0078 26.8 8.4 108 493-604 9-146 (255)
401 PRK06290 aspartate aminotransf 25.2 5.4E+02 0.012 28.3 10.5 95 491-599 103-216 (410)
402 PRK05664 threonine-phosphate d 25.2 8.2E+02 0.018 25.8 11.6 102 494-605 65-166 (330)
403 PRK07589 ornithine cyclodeamin 25.2 5.5E+02 0.012 28.3 10.4 99 485-586 118-228 (346)
404 TIGR00215 lpxB lipid-A-disacch 25.2 7.1E+02 0.015 27.2 11.3 42 544-601 251-292 (385)
405 PRK07671 cystathionine beta-ly 25.2 7.9E+02 0.017 26.8 11.7 71 520-600 89-169 (377)
406 PRK04663 murD UDP-N-acetylmura 25.1 4.7E+02 0.01 29.1 10.0 90 495-600 8-97 (438)
407 TIGR01777 yfcH conserved hypot 25.0 2.2E+02 0.0049 28.5 7.0 92 497-597 1-103 (292)
408 PF01451 LMWPc: Low molecular 24.9 99 0.0021 28.4 4.1 70 501-570 10-85 (138)
409 PF13460 NAD_binding_10: NADH( 24.9 2.9E+02 0.0064 25.8 7.4 98 497-608 1-102 (183)
410 cd01971 Nitrogenase_VnfN_like 24.8 1E+03 0.022 26.6 17.1 98 494-602 293-396 (427)
411 PF05185 PRMT5: PRMT5 arginine 24.8 2.5E+02 0.0053 32.0 7.9 71 494-566 187-263 (448)
412 TIGR01963 PHB_DH 3-hydroxybuty 24.7 4.2E+02 0.009 26.0 8.7 104 495-602 2-135 (255)
413 COG0608 RecJ Single-stranded D 24.6 3E+02 0.0066 31.3 8.6 76 481-558 23-103 (491)
414 TIGR03542 DAPAT_plant LL-diami 24.6 4.1E+02 0.0088 28.9 9.3 102 491-600 93-211 (402)
415 TIGR01976 am_tr_V_VC1184 cyste 24.6 8.8E+02 0.019 25.9 16.5 100 495-600 79-191 (397)
416 PRK00377 cbiT cobalt-precorrin 24.4 3E+02 0.0066 27.0 7.6 76 490-568 37-118 (198)
417 KOG4180 Predicted kinase [Gene 24.4 61 0.0013 35.7 2.8 56 535-601 79-135 (395)
418 PRK13399 fructose-1,6-bisphosp 24.4 2.6E+02 0.0056 31.0 7.7 103 494-599 17-140 (347)
419 PRK06358 threonine-phosphate d 24.3 6.6E+02 0.014 26.8 10.8 94 491-600 69-179 (354)
420 PRK12361 hypothetical protein; 24.3 2.8E+02 0.006 32.0 8.3 43 494-541 298-340 (547)
421 PRK07179 hypothetical protein; 24.2 6.4E+02 0.014 27.3 10.8 97 494-600 115-216 (407)
422 TIGR00514 accC acetyl-CoA carb 24.2 1.1E+02 0.0025 34.0 5.1 31 496-528 4-34 (449)
423 PRK09987 dTDP-4-dehydrorhamnos 24.1 1.8E+02 0.004 30.2 6.4 30 578-607 79-108 (299)
424 PRK09148 aminotransferase; Val 24.1 4.7E+02 0.01 28.5 9.8 99 495-600 94-203 (405)
425 cd00640 Trp-synth-beta_II Tryp 24.1 6E+02 0.013 25.5 9.9 57 493-553 49-105 (244)
426 cd03808 GT1_cap1E_like This fa 24.0 7E+02 0.015 24.6 10.6 97 494-601 188-293 (359)
427 PLN02686 cinnamoyl-CoA reducta 24.0 4.9E+02 0.011 28.1 9.8 108 492-604 51-180 (367)
428 PF02550 AcetylCoA_hydro: Acet 23.9 3.2E+02 0.0069 27.2 7.7 109 484-593 12-156 (198)
429 PRK13936 phosphoheptose isomer 23.8 7.3E+02 0.016 24.7 14.6 36 534-569 128-166 (197)
430 PRK11908 NAD-dependent epimera 23.8 4E+02 0.0087 28.1 8.9 105 496-604 3-119 (347)
431 PF01053 Cys_Met_Meta_PP: Cys/ 23.8 6.2E+02 0.013 28.2 10.6 102 492-600 68-176 (386)
432 PRK05597 molybdopterin biosynt 23.7 9.8E+02 0.021 26.2 12.0 108 483-601 18-149 (355)
433 COG2242 CobL Precorrin-6B meth 23.7 3.2E+02 0.007 27.8 7.6 74 490-568 31-109 (187)
434 PLN00203 glutamyl-tRNA reducta 23.7 4.3E+02 0.0094 30.7 9.7 71 494-568 266-336 (519)
435 cd00610 OAT_like Acetyl ornith 23.5 9.3E+02 0.02 25.8 11.8 31 570-600 198-230 (413)
436 cd04185 GT_2_like_b Subfamily 23.5 3E+02 0.0066 26.0 7.2 10 566-575 111-120 (202)
437 PRK05294 carB carbamoyl phosph 23.4 5.4E+02 0.012 32.5 11.1 99 493-607 937-1044(1066)
438 PRK05653 fabG 3-ketoacyl-(acyl 23.4 5.1E+02 0.011 25.0 9.0 107 494-604 5-141 (246)
439 TIGR01181 dTDP_gluc_dehyt dTDP 23.4 3.5E+02 0.0077 27.3 8.1 107 497-603 2-125 (317)
440 PLN02427 UDP-apiose/xylose syn 23.3 3.4E+02 0.0073 29.2 8.3 102 495-602 15-135 (386)
441 TIGR01182 eda Entner-Doudoroff 23.3 1.9E+02 0.0042 29.5 6.1 73 528-600 17-106 (204)
442 PRK12726 flagellar biosynthesi 23.2 1.1E+03 0.025 26.7 16.2 73 493-567 205-291 (407)
443 cd05569 PTS_IIB_fructose PTS_I 23.1 2E+02 0.0044 25.5 5.5 71 496-602 2-79 (96)
444 TIGR00441 gmhA phosphoheptose 23.1 5.9E+02 0.013 24.2 9.1 39 559-604 77-115 (154)
445 COG1086 Predicted nucleoside-d 23.0 3.4E+02 0.0074 32.2 8.5 115 493-609 249-381 (588)
446 PRK10637 cysG siroheme synthas 23.0 3.5E+02 0.0077 30.6 8.7 94 493-602 11-104 (457)
447 PRK00950 histidinol-phosphate 22.9 4.7E+02 0.01 27.5 9.2 51 495-551 88-139 (361)
448 KOG0387 Transcription-coupled 22.8 3.1E+02 0.0068 33.8 8.4 87 481-567 533-623 (923)
449 cd06442 DPM1_like DPM1_like re 22.8 2.5E+02 0.0054 26.9 6.6 57 495-552 28-86 (224)
450 PRK00208 thiG thiazole synthas 22.8 3.4E+02 0.0073 28.9 7.8 66 536-604 115-184 (250)
451 PRK12354 carbamate kinase; Rev 22.8 2.7E+02 0.0059 30.3 7.4 58 482-540 30-91 (307)
452 cd01065 NAD_bind_Shikimate_DH 22.7 3.7E+02 0.0079 24.7 7.4 72 493-569 18-89 (155)
453 PRK03903 transaldolase; Provis 22.7 6.2E+02 0.013 27.2 9.9 29 532-560 85-113 (274)
454 cd01979 Pchlide_reductase_N Pc 22.6 2.2E+02 0.0049 31.3 6.9 71 520-601 156-229 (396)
455 TIGR01694 MTAP 5'-deoxy-5'-met 22.6 4.1E+02 0.0088 27.3 8.4 22 582-603 181-202 (241)
456 PRK09982 universal stress prot 22.5 1.5E+02 0.0032 27.3 4.8 35 561-601 103-137 (142)
457 PF03847 TFIID_20kDa: Transcri 22.5 3.5E+02 0.0076 23.0 6.5 38 443-480 4-42 (68)
458 PF08484 Methyltransf_14: C-me 22.5 1.7E+02 0.0036 28.7 5.3 58 478-536 52-109 (160)
459 cd03820 GT1_amsD_like This fam 22.5 7.4E+02 0.016 24.3 10.3 97 493-601 177-282 (348)
460 cd01743 GATase1_Anthranilate_S 22.4 2.1E+02 0.0046 27.7 6.0 65 535-605 13-81 (184)
461 cd01967 Nitrogenase_MoFe_alpha 22.4 6.1E+02 0.013 27.7 10.2 93 493-604 285-382 (406)
462 PRK05452 anaerobic nitric oxid 22.3 1.2E+03 0.026 26.7 12.8 97 506-606 239-347 (479)
463 PRK08068 transaminase; Reviewe 22.3 8.5E+02 0.018 26.2 11.2 96 491-600 91-205 (389)
464 TIGR02931 anfK_nitrog Fe-only 22.2 1.2E+03 0.026 26.5 15.2 94 493-602 311-413 (461)
465 cd05710 SIS_1 A subgroup of th 22.1 1.1E+02 0.0025 27.7 3.8 26 490-515 44-72 (120)
466 PRK07877 hypothetical protein; 22.1 6.6E+02 0.014 30.6 11.0 122 471-603 85-229 (722)
467 PF00670 AdoHcyase_NAD: S-aden 22.0 4.8E+02 0.01 25.9 8.3 87 487-585 16-112 (162)
468 TIGR00875 fsa_talC_mipB fructo 21.9 7.6E+02 0.016 25.4 10.1 55 503-560 60-117 (213)
469 cd01492 Aos1_SUMO Ubiquitin ac 21.9 8E+02 0.017 24.5 10.2 109 483-602 11-142 (197)
470 PRK11263 cardiolipin synthase 21.9 2.1E+02 0.0046 32.1 6.6 48 504-552 48-96 (411)
471 TIGR01369 CPSaseII_lrg carbamo 21.9 4.9E+02 0.011 32.8 10.3 98 492-604 936-1042(1050)
472 PF01380 SIS: SIS domain SIS d 21.9 1.5E+02 0.0032 26.3 4.5 39 531-569 67-105 (131)
473 cd03786 GT1_UDP-GlcNAc_2-Epime 21.8 5.5E+02 0.012 26.8 9.4 37 553-604 269-305 (363)
474 PRK06718 precorrin-2 dehydroge 21.8 5.2E+02 0.011 25.9 8.8 92 493-601 9-100 (202)
475 TIGR02208 lipid_A_msbB lipid A 21.8 9.6E+02 0.021 25.3 17.7 105 495-602 123-239 (305)
476 cd03821 GT1_Bme6_like This fam 21.7 6.5E+02 0.014 25.1 9.5 99 493-601 202-311 (375)
477 PRK09295 bifunctional cysteine 21.7 1E+03 0.023 25.7 14.8 101 494-600 86-199 (406)
478 PRK13392 5-aminolevulinate syn 21.6 1.1E+03 0.023 25.7 13.7 64 539-606 148-218 (410)
479 TIGR03301 PhnW-AepZ 2-aminoeth 21.5 9.1E+02 0.02 25.0 12.6 98 496-601 53-161 (355)
480 cd04187 DPM1_like_bac Bacteria 21.4 3.6E+02 0.0077 25.1 7.2 7 546-552 82-88 (181)
481 TIGR01139 cysK cysteine syntha 21.4 1.2E+02 0.0027 31.7 4.5 58 491-552 54-111 (298)
482 PRK13435 response regulator; P 21.4 5.9E+02 0.013 22.7 8.5 80 519-605 5-88 (145)
483 COG0707 MurG UDP-N-acetylgluco 21.4 3.5E+02 0.0076 29.8 8.0 97 493-606 182-283 (357)
484 PF13090 PP_kinase_C: Polyphos 21.3 88 0.0019 34.7 3.3 50 501-552 48-100 (352)
485 PRK07505 hypothetical protein; 21.3 1E+03 0.022 25.8 11.6 101 495-600 107-214 (402)
486 PF00391 PEP-utilizers: PEP-ut 21.3 58 0.0013 27.8 1.6 35 558-603 27-61 (80)
487 PF04230 PS_pyruv_trans: Polys 21.2 1.7E+02 0.0037 28.3 5.1 23 583-605 87-109 (286)
488 cd00984 DnaB_C DnaB helicase C 21.2 6.4E+02 0.014 25.0 9.3 46 561-606 123-174 (242)
489 COG3980 spsG Spore coat polysa 21.1 3.3E+02 0.0072 29.8 7.4 73 494-569 159-235 (318)
490 PF00070 Pyr_redox: Pyridine n 21.1 4.8E+02 0.01 21.6 7.2 53 497-549 2-59 (80)
491 PRK13111 trpA tryptophan synth 20.9 9.9E+02 0.021 25.1 12.1 101 495-601 92-206 (258)
492 TIGR02463 MPGP_rel mannosyl-3- 20.9 90 0.0019 30.7 3.1 55 496-555 9-66 (221)
493 PF13692 Glyco_trans_1_4: Glyc 20.9 3.3E+02 0.0071 24.0 6.5 80 509-603 24-103 (135)
494 PF00185 OTCace: Aspartate/orn 20.9 3.8E+02 0.0081 25.9 7.3 73 493-567 1-79 (158)
495 TIGR01306 GMP_reduct_2 guanosi 20.8 6E+02 0.013 27.9 9.5 49 499-551 117-165 (321)
496 KOG0781 Signal recognition par 20.8 3.5E+02 0.0075 31.7 7.9 31 502-534 391-421 (587)
497 cd04179 DPM_DPG-synthase_like 20.8 3E+02 0.0064 25.4 6.5 26 507-532 43-68 (185)
498 KOG1371 UDP-glucose 4-epimeras 20.8 5.9E+02 0.013 28.3 9.3 27 579-605 103-129 (343)
499 cd08239 THR_DH_like L-threonin 20.7 3.9E+02 0.0085 27.8 8.0 39 491-530 161-199 (339)
500 PRK12452 cardiolipin synthetas 20.7 5.4E+02 0.012 29.7 9.7 97 473-587 342-445 (509)
No 1
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-90 Score=737.73 Aligned_cols=470 Identities=51% Similarity=0.776 Sum_probs=387.7
Q ss_pred CCCccccCCCC-CCCCcccccccc--cCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCCCCCCCccccccCCccc
Q 006803 50 DFSPVMIPPPR-HHSENLSHLRSA--AVAVPESSSRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFG 126 (630)
Q Consensus 50 ~~spv~ipp~r-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (630)
.++|+|||++| |.+|++...+.+ ..+.....+..+ .+.|+.++.+. .+ .+.
T Consensus 20 ~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~--------~~~~~~p~~~t-~s-~~~---------------- 73 (556)
T KOG1467|consen 20 LPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQG--------EDKNAEPKDLT-AS-AKQ---------------- 73 (556)
T ss_pred ccccccCccccccchHHHHHHHHHhhcCccccccccCC--------CccccCccccc-cc-ccc----------------
Confidence 89999999999 999999987666 445444444333 36677777544 22 000
Q ss_pred CCCCCCcccCCCCCCCCcccccccccccccccCCCccccccCCCCceEEecCcccchhhhhhccHHHHHHHHHHHHHHHH
Q 006803 127 RNSSGKFSAGSSFPGGGFDLTTVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKA 206 (630)
Q Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~k~sk~eRr~l~~~q~~ak~ 206 (630)
.+..+..|.|+||||||..-.++ .+
T Consensus 74 ----~~~~~~~s~~~~~~e~t~a~~a~---------------------------------------------------~~ 98 (556)
T KOG1467|consen 74 ----ARVAVKASLPKGGAELTVANKAA---------------------------------------------------AA 98 (556)
T ss_pred ----cccchhhcccCCcceecccccch---------------------------------------------------hh
Confidence 12477899999999999663000 00
Q ss_pred hccCCCCCCCcccCCcccccccchhhccHHHHHHHHHHHHHHHHhccccCCCCccc--cCCCCCCCCCCCCC-CCCCCCC
Q 006803 207 ATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAA--AGGAGPGNILRQPS-QNRDDPA 283 (630)
Q Consensus 207 ~~k~~~~~~~~~~~~~~~s~~~~~~k~~Kaerra~Qe~~RAak~a~~~~~~~~~~~--~~~~~~~~~~~~~~-~k~~~~~ 283 (630)
+. .+ ..+.+..++.++.....+++++|++.||++||+|.+.+++++.-+.. .+.+.+......|. .|+.-|
T Consensus 99 a~----~s-~~~~p~~~~~~ka~~~~~t~a~~~a~~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p- 172 (556)
T KOG1467|consen 99 AG----SS-ATQSPKKEKPPKAGLAVPTRAERKAIQEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALP- 172 (556)
T ss_pred hc----cc-cccCCcccCCcccccccccHHHHhhHHHHHHHHHHhhhcccccccccccccccCcccccCCCcccccccc-
Confidence 00 00 01112233445667778899999999999999999998886532110 11111111222222 122111
Q ss_pred CCCcccccCCCCCCCCCcccccCCCCCCCCccCchhhhhcccccccccccccCCceeeeccCCCccccccccChHHHhhh
Q 006803 284 VGSTIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELFRHLPQYEHGSQLTDLESKFLE 363 (630)
Q Consensus 284 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~q~d~~~~~~k~~~~~v~~~~~~~~~v~lf~hLP~~~~~~~l~~~~~~~~a 363 (630)
+.- +... +- .+.++++|.+|+|+..++. ++|++|..+ ++.||+||||+.+.. ..|..
T Consensus 173 ----~~t----~~~~-~~--~~~~~~~pq~q~kt~~~~~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~ 229 (556)
T KOG1467|consen 173 ----VTT----SVDQ-AL--KRRAVQNPQNQAKTLASAS-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIF 229 (556)
T ss_pred ----ccc----cccc-hH--HhhcccchhhhhhhhcccC-ccccccccc-----eehhhhhhhHhhccc------ccccc
Confidence 100 0000 11 5678999999999987665 788888866 899999999998875 23556
Q ss_pred ccCchhhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHH
Q 006803 364 LDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRF 443 (630)
Q Consensus 364 i~~mhPAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrr 443 (630)
+..|||||++||+||+.|+|+|+|+||++||.+|+++|+||++|++++|++||..+|+.+++||++|||++++|||||||
T Consensus 230 ~~~IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRf 309 (556)
T KOG1467|consen 230 LDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRF 309 (556)
T ss_pred cccccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHH
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEE
Q 006803 444 QKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVV 523 (630)
Q Consensus 444 lk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~Vi 523 (630)
+|++|+.++.+.++.|+|+.|++.|++||+|+|..|.+.|++++.++|+|||+|||||+|++|..+|.+||+.|++|+|+
T Consensus 310 lK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVv 389 (556)
T KOG1467|consen 310 LKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVV 389 (556)
T ss_pred HHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 524 VVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 524 V~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
|+||||++||++|++.|.+.||+|||+++++++|+|.+|++||||||+|++||.||+|+||+++||+|++|||||+||||
T Consensus 390 VVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE 469 (556)
T KOG1467|consen 390 VVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCE 469 (556)
T ss_pred EEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCcccccccCcccccc
Q 006803 604 AYKFHERVQLDSICSNELGMLVLVLV 629 (630)
Q Consensus 604 t~Kf~~r~~~ds~i~nElrdP~EVl~ 629 (630)
+|||++|+|+|++++|||+||++|.+
T Consensus 470 ~yKF~eRvQlDsi~~NEL~dpn~l~~ 495 (556)
T KOG1467|consen 470 AYKFHERVQLDSIVSNELGDPNALQE 495 (556)
T ss_pred hhhhhhhhhhhhhhhcccCChhhhhh
Confidence 99999999999999999999998754
No 2
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=1.5e-60 Score=500.95 Aligned_cols=264 Identities=22% Similarity=0.314 Sum_probs=248.9
Q ss_pred Cceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCc
Q 006803 337 NRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGK 410 (630)
Q Consensus 337 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~ 410 (630)
+.|.|| +.||++.+|+.|.++++++.+|++|. |+| |.++|++|++++++. .
T Consensus 8 ~~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGApai--------------g~~aa~~~~l~~~~~-~-------- 64 (331)
T TIGR00512 8 GSLELLDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAI--------------GIVAAYGLALAAREA-D-------- 64 (331)
T ss_pred CEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCcccCchHH--------------HHHHHHHHHHHHhhc-C--------
Confidence 469999 99999999999999999999999999 999 999999999988764 1
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006803 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATK 490 (630)
Q Consensus 411 ~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~ 490 (630)
...+|.+.|+..+++|.+||||+|||+||+++|+..+..+ .+.+++|+.+++.+++|++|++ .+++.|+++|.++
T Consensus 65 -~~~~~~~~l~~~~~~L~~~RPtavnL~~A~~~~~~~i~~~---~~~~~~k~~l~e~a~~~~~e~~-~~~~~I~~~g~~~ 139 (331)
T TIGR00512 65 -EREEFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALEAA---KTVADIKEALLAEAERILEEDL-EDNRAIGENGAAL 139 (331)
T ss_pred -CHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 2367889999999999999999999999999999888763 4688999999999999999865 7899999999999
Q ss_pred ccCCC----EEEeecChH--------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcchhHHH
Q 006803 491 VRDGD----VLLTYGSSC--------VVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSY 557 (630)
Q Consensus 491 I~dgd----vILT~g~S~--------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~ 557 (630)
|++|+ +|||||||+ ||+++|+.||++|++|+|||+||||++||.+| +++|.+.||+||||+|++++|
T Consensus 140 I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~ 219 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAH 219 (331)
T ss_pred hcCCCCCCceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHH
Confidence 99999 999999985 89999999999999999999999999999977 599999999999999999999
Q ss_pred Hhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 558 IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 558 iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
+|+ +||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||++.++.|..+.||+|||+|++
T Consensus 220 ~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~ 292 (331)
T TIGR00512 220 LMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVT 292 (331)
T ss_pred HhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCHHHhc
Confidence 999 89999999999999999999999999999999999999999999999999999999999999999986
No 3
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=7.5e-60 Score=498.24 Aligned_cols=266 Identities=23% Similarity=0.274 Sum_probs=247.6
Q ss_pred CCceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCC
Q 006803 336 KNRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPG 409 (630)
Q Consensus 336 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~ 409 (630)
.+.|.|| +.||++..|+.|.++++++.+|++|. |+| |.+++++|++++++.-.
T Consensus 10 ~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGApai--------------g~aaa~~lal~~~~~~~------- 68 (344)
T PRK05720 10 DGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMVVRGAPAI--------------GIAAAYGMALAAREDAS------- 68 (344)
T ss_pred CCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCeecCCcHH--------------HHHHHHHHHHHHhhccC-------
Confidence 3579999 99999999999999999999999999 999 99999999888765311
Q ss_pred cchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006803 410 KTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAAT 489 (630)
Q Consensus 410 ~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~ 489 (630)
....+|.+.|+..+++|.+||||++||+|+++++++.+... +.+++++.+++.+++|++|++ .+++.|+++|.+
T Consensus 69 -~~~~~~~~~l~~~~~~L~~~RPtavnL~~ai~~~~~~i~~~----~~~~~~~~l~~~a~~~~~e~~-~~~~~I~~~g~~ 142 (344)
T PRK05720 69 -DDGEEFLKKLEEAAAYLAASRPTAVNLFWALDRMREVLAPL----PGAERKAALEEEAIEIHEEDV-EINRAIGEHGLT 142 (344)
T ss_pred -CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 12467888999999999999999999999999999887542 578999999999999999976 789999999999
Q ss_pred hccCCCEEEeecChH--------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcchhHHHHhc
Q 006803 490 KVRDGDVLLTYGSSC--------VVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSYIMH 560 (630)
Q Consensus 490 ~I~dgdvILT~g~S~--------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~ 560 (630)
+|++|++|||||||+ |++++|+.||++|++|+|||+||||++||.+| +++|.+.||+||||+|+|++|+|+
T Consensus 143 ~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~ 222 (344)
T PRK05720 143 LIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQ 222 (344)
T ss_pred HccCCCEEEEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhc
Confidence 999999999999996 67899999999999999999999999999977 599999999999999999999998
Q ss_pred --cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 561 --EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 561 --~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
+||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||+++++.|..+.||+|||+||+
T Consensus 223 ~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~ev~ 292 (344)
T PRK05720 223 TGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVT 292 (344)
T ss_pred ccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHHHhc
Confidence 59999999999999999999999999999999999999999999999999999999999999999985
No 4
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-59 Score=481.51 Aligned_cols=267 Identities=23% Similarity=0.275 Sum_probs=250.1
Q ss_pred ceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 006803 338 RVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKT 411 (630)
Q Consensus 338 ~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~ 411 (630)
.|.|| +.||++..|+.|+++++++.+|++|. ||| |.+++++|+++.++.-.+.
T Consensus 13 ~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAI--------------gv~AayG~alaa~~~~~~~------- 71 (346)
T COG0182 13 SVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAI--------------GVAAAYGLALAARESKNDS------- 71 (346)
T ss_pred eEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHH--------------HHHHHHHHHHHHHhccccc-------
Confidence 68889 99999999999999999999999999 999 9999999999988753221
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006803 412 LVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKV 491 (630)
Q Consensus 412 ~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I 491 (630)
..+++.+.|....+.|.++|||+|||+|++++|++.+.+.. +.++.++.+.+.+.++.+|++ ..|..|+++|+++|
T Consensus 72 ~~~e~~~~le~a~~~l~~tRPTAvNLfwal~rm~~~~~~~~---~v~~~~~~~~~eA~~i~~ED~-e~n~~iG~~G~~ll 147 (346)
T COG0182 72 KGEEFIEALEKAAETLKSTRPTAVNLFWALDRMLNAAKEAI---EVKEPKESILQEAEEIAEEDL-EANRAIGENGAELL 147 (346)
T ss_pred chHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 24688999999999999999999999999999999886653 368899999999999999876 78999999999999
Q ss_pred cCCCEEEeecChH--------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcchhHHHHhc--
Q 006803 492 RDGDVLLTYGSSC--------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHINAVSYIMH-- 560 (630)
Q Consensus 492 ~dgdvILT~g~S~--------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~-- 560 (630)
.+|++||||||.+ |++++|+.||++|+..+||++||||++||.+|+ |||.+.|||+|+|+|||++|+|+
T Consensus 148 ~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~g 227 (346)
T COG0182 148 PDGDTVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQG 227 (346)
T ss_pred ccCCeEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHhC
Confidence 9999999999998 689999999999999999999999999999997 99999999999999999999999
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCcccccc
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLV 629 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl~ 629 (630)
.||+||+|||+|+.||+++||||||++|++||+|||||||++|..+||.....|++|.||+|||+||+.
T Consensus 228 ~Id~viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~ 296 (346)
T COG0182 228 MIDAVIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLE 296 (346)
T ss_pred CCcEEEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEe
Confidence 599999999999999999999999999999999999999999999999999999999999999999863
No 5
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=3.4e-58 Score=487.27 Aligned_cols=269 Identities=22% Similarity=0.258 Sum_probs=246.1
Q ss_pred CCceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCC
Q 006803 336 KNRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPG 409 (630)
Q Consensus 336 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~ 409 (630)
.+.|.|| +.||+++.|+.|.++++++.+|++|. |+| |.+++++|++++++.-.
T Consensus 23 ~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApai--------------giaAa~glal~~~~~~~------- 81 (363)
T PRK05772 23 DNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAI--------------GITAGYGMVLALIENNV------- 81 (363)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCCcHH--------------HHHHHHHHHHHHHhccC-------
Confidence 3469999 99999999999999999999999999 999 99999999998876311
Q ss_pred cchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006803 410 KTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLP---LTLSETEAKAALCNDIDRFINEKIILADKVIVRH 486 (630)
Q Consensus 410 ~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~---~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~ 486 (630)
....++.+.|+..+++|.++|||+|||.|++++|++.+.... ...+.+++++.+.+.+++|++|++ .++++|+++
T Consensus 82 -~~~~~~~~~l~~~~~~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~-~~~~~I~~~ 159 (363)
T PRK05772 82 -KTLDDAIRELTRAKTILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEEY-DAEIQMGLY 159 (363)
T ss_pred -CCHHHHHHHHHHHHHHHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 134678889999999999999999999999999998876431 123678999999999999999976 789999999
Q ss_pred HHhhccCCCEEEeecChH---------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcchhHH
Q 006803 487 AATKVRDGDVLLTYGSSC---------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHINAVS 556 (630)
Q Consensus 487 a~~~I~dgdvILT~g~S~---------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~ 556 (630)
|+++|.+|++|||||||+ |++++|+.|+++|++|+|||+||||++||.+|+ |+|.+.|||||||+|||++
T Consensus 160 g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~ 239 (363)
T PRK05772 160 GLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVG 239 (363)
T ss_pred HHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHH
Confidence 999999999999999995 679999999999999999999999999999885 9999999999999999999
Q ss_pred HHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 557 YIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 557 ~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
|+|+ +||+||+|||+|++||+++||+|||++|++||+||||||||||+|||+++++. ..+.+|+|||+||+
T Consensus 240 ~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~-~~i~ieer~p~ev~ 312 (363)
T PRK05772 240 LVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDV-NDVKIEERDPNEVR 312 (363)
T ss_pred HHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccCccccc-cccccccCCHHHhc
Confidence 9996 59999999999999999999999999999999999999999999999999988 66678999999985
No 6
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2.9e-58 Score=484.93 Aligned_cols=265 Identities=20% Similarity=0.262 Sum_probs=244.7
Q ss_pred Cceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCc
Q 006803 337 NRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGK 410 (630)
Q Consensus 337 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~ 410 (630)
+.|.|| +.||++..|+.|.++++++.+|++|. |+| |.++|++|+++.++...
T Consensus 11 ~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vRGApai--------------g~aaa~g~~l~~~~~~~-------- 68 (339)
T PRK06036 11 NSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPAL--------------GAAGGYGIALAARLSKA-------- 68 (339)
T ss_pred CeEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCcccCchHH--------------HHHHHHHHHHHHHhccc--------
Confidence 579999 99999999999999999999999999 999 99999999998876311
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006803 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATK 490 (630)
Q Consensus 411 ~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~ 490 (630)
....+|.+.|+..+++|.++|||++||+|++++++..+... .+.+++++.+++.+++|++|++ .+++.|+++|.++
T Consensus 69 ~~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~r~~~~~~~~---~~~~~~~~~~~e~a~~~~~e~~-~~~~~I~~~g~~~ 144 (339)
T PRK06036 69 KDVDELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAALDA---EDVEEIRDIALREAERIAEEDV-ARNKLIGKHGAKL 144 (339)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 13467889999999999999999999999999988765442 3678999999999999999865 8999999999999
Q ss_pred ccCCCEEEeecChH--------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcchhHHHHhcc
Q 006803 491 VRDGDVLLTYGSSC--------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHINAVSYIMHE 561 (630)
Q Consensus 491 I~dgdvILT~g~S~--------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~~ 561 (630)
|++|++|||||||+ |++++|+.|+++|++|+|||+||||++||.+|+ |+|.+.||+||||+|+|++|+|++
T Consensus 145 I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~ 224 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQ 224 (339)
T ss_pred ccCCCEEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhcc
Confidence 99999999999996 789999999999999999999999999999985 999999999999999999999987
Q ss_pred --ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCcccccc
Q 006803 562 --VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLV 629 (630)
Q Consensus 562 --Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl~ 629 (630)
||+||+|||+|++|| ++||+|||++|++||+||||||||||++||+.....| .+.||+|||+||+.
T Consensus 225 ~~Vd~VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~ 292 (339)
T PRK06036 225 GMVDKVIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-SVKIEERDPDELRY 292 (339)
T ss_pred CCCCEEEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-CcccccCCHHHhcc
Confidence 999999999999997 9999999999999999999999999999999998888 78899999999863
No 7
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.1e-57 Score=476.59 Aligned_cols=254 Identities=26% Similarity=0.422 Sum_probs=241.6
Q ss_pred CchhhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Q 006803 366 SMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQK 445 (630)
Q Consensus 366 ~mhPAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk 445 (630)
.|||.+..++..+.++.+.|+.+.|++++.+|..++.++.++ ...+|++.|+..+++|.+|||++++|+|++|+|+
T Consensus 2 ~~~~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~~~~----~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~ 77 (310)
T PRK08535 2 EVMPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKSDAE----SPEEFKAEMRAAANILISTRPTAVSLPNAVRYVM 77 (310)
T ss_pred CCchhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 589999999999999999999999999999999999988763 3568999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEc
Q 006803 446 SRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVV 525 (630)
Q Consensus 446 ~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ 525 (630)
.... ..+.+++|+.+++.+++|++| +..+++.|+++|.++|++|++|||||||+||+++|+.|+++|++|+|||+
T Consensus 78 ~~~~----~~~~~~~k~~l~e~~~~~~~e-~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~ 152 (310)
T PRK08535 78 RYYS----GETVEEARESVIERAEEFIES-SENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIAT 152 (310)
T ss_pred Hhhc----cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 8632 246899999999999999987 56899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 526 DSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 526 ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
||||++||+.|+++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|
T Consensus 153 EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 153 ETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred cCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcccccccCccccc
Q 006803 606 KFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 606 Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
||++++++|+.+.||+|||+||+
T Consensus 233 K~~~~~~~~~~~~ie~~~~~ev~ 255 (310)
T PRK08535 233 KFSPKTLLGELVEIEERDPTEVL 255 (310)
T ss_pred eecCCCCCCCcceecccCHHHhc
Confidence 99999999999999999999885
No 8
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=2.9e-57 Score=478.48 Aligned_cols=267 Identities=18% Similarity=0.222 Sum_probs=247.4
Q ss_pred Cceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCc
Q 006803 337 NRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGK 410 (630)
Q Consensus 337 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~ 410 (630)
+.|.|| +.||++..|+.|.++++++.+|++|. |+| |.+++++|++++++...
T Consensus 22 ~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaI--------------gvaAa~glal~~~~~~~-------- 79 (356)
T PRK08334 22 GKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAI--------------GAAAAFGLALYAETSKA-------- 79 (356)
T ss_pred CEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCcHHH--------------HHHHHHHHHHHHHhccc--------
Confidence 469999 99999999999999999999999999 999 99999999999876321
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006803 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATK 490 (630)
Q Consensus 411 ~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~ 490 (630)
....+|.+.|+..+.+|.++|||+|||.|++++|++.+..... .+.+++++.+.+.++.|+++++ .++++|+++|+++
T Consensus 80 ~~~~~~~~~l~~~~~~L~~~RPTavnL~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~i~~~d~-~~~~~Ig~~g~~l 157 (356)
T PRK08334 80 KTKDEFMDGFYKAYETLKNTRPTAVNLFWALNRIKKLVEEHLE-DPLDEIKRLIVEEAQKIADEDV-EANLRMGHYGAEV 157 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 1246788899999999999999999999999999988764321 3578899999999999999875 7899999999999
Q ss_pred ccCCCEEEeecCh--------HHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcchhHHHHhc-
Q 006803 491 VRDGDVLLTYGSS--------CVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHINAVSYIMH- 560 (630)
Q Consensus 491 I~dgdvILT~g~S--------~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~- 560 (630)
|.||+ ||||||+ +||+++|+.||++|+.|+|||+||||++||.+|+ |+|.+.||+||||+|||++|+|+
T Consensus 158 i~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~ 236 (356)
T PRK08334 158 LPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQ 236 (356)
T ss_pred cCCCC-EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhh
Confidence 99999 9999974 6899999999999999999999999999999996 99999999999999999999997
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
+||+||+|||+|++||+++||+|||++|++||+|||||||||+++||+..+..+..+.||.|+|+||+
T Consensus 237 ~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~ 305 (356)
T PRK08334 237 GKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVL 305 (356)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHhe
Confidence 79999999999999999999999999999999999999999999999999999999999999999986
No 9
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=1.7e-56 Score=465.84 Aligned_cols=245 Identities=27% Similarity=0.410 Sum_probs=224.8
Q ss_pred hHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCc
Q 006803 357 LESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRP 432 (630)
Q Consensus 357 ~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRP 432 (630)
+++++.+|++|+ |+| |.+++++|++++.+ ..+ ....+|++.|+..+++|.+|||
T Consensus 2 ~~~~~~~ik~~~vrGa~~i--------------a~~aa~~l~~~~~~----~~~----~~~~~~~~~l~~~~~~L~~arP 59 (301)
T TIGR00511 2 VEETAEKIRSMEIRGAGRI--------------ARAAAAALMEQAAK----AES----ASPEEFRAEMREAANILISTRP 59 (301)
T ss_pred HHHHHHHHHhCcccCcHHH--------------HHHHHHHHHHHHHh----ccc----CCHHHHHHHHHHHHHHHHHcCC
Confidence 577888888886 777 66666666555543 322 2457899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHH
Q 006803 433 LSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLY 512 (630)
Q Consensus 433 tsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~ 512 (630)
++++|+|++++|++.|+. .+.+++|+.+++.+++|++| +..+++.|+++|.++|++|++|||||||+||+++|+.
T Consensus 60 t~v~l~nai~~~~~~i~~----~~~~~~k~~l~~~~~~~~~e-~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~ 134 (301)
T TIGR00511 60 TAVSLPNAVRYVLKYMSG----EDVETLRETVIERADAFINQ-SDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKT 134 (301)
T ss_pred chhhHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHH
Confidence 999999999999998854 36789999999999999977 6799999999999999999999999999999999999
Q ss_pred HHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 513 AHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 513 A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
|+++|++|+|||+||||++||+.|+++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||
T Consensus 135 a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak 214 (301)
T TIGR00511 135 AFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAR 214 (301)
T ss_pred HHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 593 AFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 593 ~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
+|+||||||||+|||++++++|+.+.||++||+||+
T Consensus 215 ~~~vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~ 250 (301)
T TIGR00511 215 EARVPFMVAAETYKFHPKTITGELVEIEERDPTEVL 250 (301)
T ss_pred HhCCCEEEEcccceecCCCCCCCcccccccCHHHhc
Confidence 999999999999999999999999999999999985
No 10
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=4.7e-56 Score=465.80 Aligned_cols=247 Identities=23% Similarity=0.295 Sum_probs=222.4
Q ss_pred CCceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCC
Q 006803 336 KNRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPG 409 (630)
Q Consensus 336 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~ 409 (630)
.+.|.|| +.||+++.|+.|.++++++.+|++|. |+| |.++|++++++..+.
T Consensus 19 ~~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGAp~i--------------g~~aa~g~~l~~~~~--------- 75 (329)
T PRK06371 19 DGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAI--------------GVTAAYGLAMASKNG--------- 75 (329)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCeecChHHH--------------HHHHHHHHHHHHHhH---------
Confidence 3579999 99999999999999999999999999 999 999999998876542
Q ss_pred cchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006803 410 KTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAAT 489 (630)
Q Consensus 410 ~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~ 489 (630)
+.+...+++|.+||||++||+||+++|+... .+.++++ ++++|++ .+++.|+++|.+
T Consensus 76 --------~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~------~~~~~a~--------~~~~e~~-~~~~~I~~~g~~ 132 (329)
T PRK06371 76 --------ENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE------FDMNAAR--------RYAMEII-GRSKKIGEYGNE 132 (329)
T ss_pred --------HHHHHHHHHHHhcCcchhhHHHHHHHHHhhc------CcHHHHH--------HHHHHHH-HHHHHHHHHHHH
Confidence 3367788999999999999999999997532 2334444 4555544 678899999999
Q ss_pred hccCCCEEEeecChH--------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcchhHHHHhc
Q 006803 490 KVRDGDVLLTYGSSC--------VVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSYIMH 560 (630)
Q Consensus 490 ~I~dgdvILT~g~S~--------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~ 560 (630)
+|++|++|||||||+ |++++|+.|+++|++|+|||+||||++||.+| +|+|.+.||+||||+|||++|+|+
T Consensus 133 ~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~ 212 (329)
T PRK06371 133 LIKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMR 212 (329)
T ss_pred HcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhh
Confidence 999999999999985 57999999999999999999999999999997 599999999999999999999998
Q ss_pred --cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 561 --EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 561 --~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
+||+||+|||+|++||+++||+|||++|++||+||||||||||+++|+.....+..+.+|+|+|+|++
T Consensus 213 ~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~ev~ 282 (329)
T PRK06371 213 KKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVL 282 (329)
T ss_pred hcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHHee
Confidence 59999999999999999999999999999999999999999999999888888889999999999986
No 11
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=1.3e-55 Score=459.54 Aligned_cols=249 Identities=24% Similarity=0.340 Sum_probs=227.1
Q ss_pred ccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHh
Q 006803 354 LTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIE 429 (630)
Q Consensus 354 l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~ 429 (630)
|+++++.+.+|++|. |+| +.+++++++.+++. +.+ ....+|.+.|+..+++|.+
T Consensus 1 ~~~~~~~~~~I~~m~vrGa~~i--------------a~aa~~~l~~~~~~----~~~----~~~~e~~~~l~~~~~~L~~ 58 (303)
T TIGR00524 1 CRTYEDVADAIKSMVVRGAPAI--------------GVAAAYGLALAARK----IET----DNVEEFKEDLEKAADFLLS 58 (303)
T ss_pred CCCHHHHHHHHHhCeecChHHH--------------HHHHHHHHHHHHHh----ccC----CCHHHHHHHHHHHHHHHHH
Confidence 467888999999986 777 66666666665543 322 2457888999999999999
Q ss_pred cCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecCh------
Q 006803 430 CRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSS------ 503 (630)
Q Consensus 430 aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S------ 503 (630)
|||++++|+|+++++++.+.. ..+.+++|+.|++.+++|++|++ .+++.|+++|.++|++|++|||||||
T Consensus 59 ~RPt~v~l~na~~~~~~~i~~---~~~~~~~k~~l~~~~~~~~~e~~-~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~ 134 (303)
T TIGR00524 59 TRPTAVNLFWALERVLNSAEN---GESVEEAKESLLREAIEIIEEDL-ETNRKIGENGAKLIKDGDTVLTHCNAGALATS 134 (303)
T ss_pred hCCchhhHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCEEEEecCCcccccc
Confidence 999999999999999988853 24688999999999999999976 68999999999999999999999999
Q ss_pred --HHHHHHHHHHHHcCCceEEEEcCCCCCchH-HHHHHHHHhCCCcEEEEcchhHHHHhc--cccEEEEcceeEecCCce
Q 006803 504 --CVVEMILLYAHELGKQFRVVVVDSRPKHEG-QALLRRLLAKGLSCTYTHINAVSYIMH--EVTRVFLGASSVLSNGTT 578 (630)
Q Consensus 504 --~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaI~aNG~V 578 (630)
+||+++|+.|+++|++|+|||+||||++|| +.++++|.+.||+||||+|++++|+|+ +||+||+|||+|++||++
T Consensus 135 ~~~tv~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v 214 (303)
T TIGR00524 135 DYGTALGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDV 214 (303)
T ss_pred CcchHHHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCE
Confidence 999999999999999999999999999999 666899999999999999999999999 999999999999999999
Q ss_pred ecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 579 YSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 579 ~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
+||+|||++|++||+|+||||||||+|||++++++|..+.+|+|||+|++
T Consensus 215 ~nk~GT~~lA~~Ak~~~vPv~V~a~s~K~~~~~~~g~~i~~e~~~~~ev~ 264 (303)
T TIGR00524 215 ANKIGTYQLAVLAKEFRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVA 264 (303)
T ss_pred eEhhhHHHHHHHHHHhCCCEEEecccccccCCCCCccccccccCCHHHhc
Confidence 99999999999999999999999999999999999999999999999985
No 12
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=4.8e-55 Score=447.25 Aligned_cols=242 Identities=40% Similarity=0.573 Sum_probs=216.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHH
Q 006803 382 DVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAK 461 (630)
Q Consensus 382 ~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaK 461 (630)
+|.|+.++|++++.+|++++.++.+ +...+|++.|+.++++|.++||++++|+|+++++++.+.......+.++.+
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~~~----~~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~~~~~~~~~~ 76 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDSKA----TTVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLDESEDFEEAK 76 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHCHC----SSHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhhcccchHHHH
Confidence 5889999999999999999999876 356789999999999999999999999999999999877655566899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHH
Q 006803 462 AALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLL 541 (630)
Q Consensus 462 e~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~ 541 (630)
+.+++.+++|++| +..+.+.|++++.++|++|++|||||||++|+.+|+.|+++|++|+|||+||||++||+.|+++|.
T Consensus 77 ~~l~~~i~~~~~e-~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~ 155 (282)
T PF01008_consen 77 QSLLEAIDEFLDE-IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELA 155 (282)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhh
Confidence 9999999999999 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEcchhHHHHhcc-ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCccccc
Q 006803 542 AKGLSCTYTHINAVSYIMHE-VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNE 620 (630)
Q Consensus 542 ~~GI~vTlI~DsAv~~iM~~-Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nE 620 (630)
+.||+|+||+|++++|+|++ ||+||+|||+|++||+++||+||+++|++||+|+|||||+|++|||++++++|+...||
T Consensus 156 ~~gi~v~~i~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~~e 235 (282)
T PF01008_consen 156 EAGIPVTLIPDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDSFNE 235 (282)
T ss_dssp HTT-EEEEE-GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGSSS-
T ss_pred hcceeEEEEechHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchhhhh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccc
Q 006803 621 LGMLVLVL 628 (630)
Q Consensus 621 lrdP~EVl 628 (630)
++||+|++
T Consensus 236 ~~~~~~v~ 243 (282)
T PF01008_consen 236 LRDPQEVL 243 (282)
T ss_dssp B--THHHH
T ss_pred ccccceee
Confidence 99999875
No 13
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-54 Score=442.04 Aligned_cols=253 Identities=30% Similarity=0.459 Sum_probs=241.5
Q ss_pred chhhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 006803 367 MHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKS 446 (630)
Q Consensus 367 mhPAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~ 446 (630)
+||.|..+...+.+..|.|+...|.+++.+|+.++.++.|+. .++|++.|+...+.|.++||++++|+|++|++++
T Consensus 2 ~~~~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~~~~~----~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~ 77 (301)
T COG1184 2 IMPEVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQAPT----VEELIDAIRELSETLVKARPTAVSLGNLIRFVLR 77 (301)
T ss_pred chHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhcccccc----HHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHh
Confidence 679999999999999999999999999999999999998863 6899999999999999999999999999999987
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcC
Q 006803 447 RIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVD 526 (630)
Q Consensus 447 ~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~E 526 (630)
.....+.++.++.+.+.+++|+++ +..+.+.|++.++++|+||++|||||+|++|+.+|+.|++.|++|+|||+|
T Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~i~~-~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtE 152 (301)
T COG1184 78 ----DSSGGDKENRRQSLIKAAQEFIDR-VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTE 152 (301)
T ss_pred ----cccccchhhHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEc
Confidence 222346788999999999999987 679999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 527 SRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 527 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
|||.+||+.|+++|.+.||+||+|+|++++++|.+||+||||||+|++||+++||+||++||++||++++|||||||+||
T Consensus 153 SRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 153 SRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYK 232 (301)
T ss_pred CCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcccccccCccccc
Q 006803 607 FHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 607 f~~r~~~ds~i~nElrdP~EVl 628 (630)
|++++++|....||++|++|++
T Consensus 233 f~p~~~~~~~~~~~~~~~~e~~ 254 (301)
T COG1184 233 FVPKTLLDTLVEIELRDPLEVA 254 (301)
T ss_pred ccccccCCCcceeeccChhhcc
Confidence 9999999999999999999984
No 14
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=8e-53 Score=432.89 Aligned_cols=230 Identities=23% Similarity=0.296 Sum_probs=207.0
Q ss_pred hHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCc
Q 006803 357 LESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRP 432 (630)
Q Consensus 357 ~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRP 432 (630)
+.++...|++|. |+| |.+++++++++.+.. . ..++++.|....++|.++||
T Consensus 6 ~~~~~~~i~~m~vrGAp~i--------------~~~aa~~l~~~a~~~-~----------~~~~~~~l~~~~~~L~~aRP 60 (275)
T PRK08335 6 VREILEEMKAERIRGASWL--------------AKKGAEAYLLLAEEL-D----------GEELENALKELREEIPEVNP 60 (275)
T ss_pred HHHHHHHHhhceecCHHHH--------------HHHHHHHHHHHHHhc-C----------hHHHHHHHHHHHHHHHHcCC
Confidence 344455566666 898 888888887766542 1 14677889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHH
Q 006803 433 LSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLY 512 (630)
Q Consensus 433 tsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~ 512 (630)
|++||.|++++|. .++.++.+.+.+++|++| +..++++|+++|.++|.+|++|||||||+||+++|+.
T Consensus 61 TavnL~~a~~~~~-----------~~~~~~~~~~~a~~~~~~-~~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~ 128 (275)
T PRK08335 61 TMASLYNLARFIP-----------ITNNPELVKSRAEEFLRL-MEEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKT 128 (275)
T ss_pred cHHhHHHHHHHhc-----------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHH
Confidence 9999999999981 245677889999999987 4589999999999999999999999999999999999
Q ss_pred HHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 513 AHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 513 A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
|+++|++|+|||+||||++||++|+|+|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||
T Consensus 129 A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak 208 (275)
T PRK08335 129 AKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACH 208 (275)
T ss_pred HHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEecccccccccccCCCcccccccCc
Q 006803 593 AFRVPVLICCEAYKFHERVQLDSICSNELGML 624 (630)
Q Consensus 593 ~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP 624 (630)
+|+||||||||+|||++.+..+ ++.+|+|++
T Consensus 209 ~~~vPfyV~a~~~k~~~~~~~~-~i~ieer~~ 239 (275)
T PRK08335 209 DNGVPFYVAAETFKFHPELKSE-EVELVERPY 239 (275)
T ss_pred HcCCCEEEECccceecccCCCC-CccccccCC
Confidence 9999999999999999999888 677888863
No 15
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-50 Score=405.88 Aligned_cols=267 Identities=19% Similarity=0.244 Sum_probs=243.6
Q ss_pred Cceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCc
Q 006803 337 NRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGK 410 (630)
Q Consensus 337 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~ 410 (630)
..|++| ++||++..|+.+.++++.|..|+.|+ ||| ++.+|++++..++. ..+.
T Consensus 11 ~sl~vLDQllLP~e~kYi~v~~v~d~~~vIk~MqVRGAPaI--------------Aivg~Lslaveiq~--~~~~----- 69 (354)
T KOG1468|consen 11 GSLEVLDQLLLPYETKYIPVRGVSDAWAVIKSMQVRGAPAI--------------AIVGSLSLAVEIQK--KGFP----- 69 (354)
T ss_pred chHhHHHHhhCcCceeEEEecchhHHHHHHHHHhhcCccHH--------------HHHHHHHHHHHHhh--ccCC-----
Confidence 468888 89999999999999999999999999 999 88999999888776 2222
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006803 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATK 490 (630)
Q Consensus 411 ~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~ 490 (630)
....+.+.|...++||.++|||+|||.|+.+.|+..+.+.. .++...++.+++..++++++++ ..|..|+.+|+++
T Consensus 70 -~~ds~~~~i~~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~--~~~~~~~~~~~~~~e~ml~~dl-~~N~~ig~~g~~~ 145 (354)
T KOG1468|consen 70 -GSDSLKEFIINKLNFLVSSRPTAVNLANAANELKPIAASED--KSEKAKREKCISYTEDMLEKDL-ADNRAIGDNGAKE 145 (354)
T ss_pred -chHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHH
Confidence 23457889999999999999999999999999999887654 2346678888899999998876 6788999999988
Q ss_pred ccC------CCEEEeecChH--------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcchhH
Q 006803 491 VRD------GDVLLTYGSSC--------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHINAV 555 (630)
Q Consensus 491 I~d------gdvILT~g~S~--------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv 555 (630)
+.+ ..+||||||++ |++++|+..|+.|+.-+|||+|||||+||.||+ .||....||.|+|+|+|+
T Consensus 146 Llq~~~~~~kltVlThCNTGSLATagyGTALGVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS~v 225 (354)
T KOG1468|consen 146 LLQAVKDKGKLTVLTHCNTGSLATAGYGTALGVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMV 225 (354)
T ss_pred HHHhcCCCCceEEEEeecCCchhhcccchHHHHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhHHH
Confidence 753 35899999998 789999999999999999999999999999998 999999999999999999
Q ss_pred HHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 556 SYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 556 ~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
+++|+ +||.|++|||+|..||+.+||||||++|++||||||||||++|...++....+|++|.||+|+|.|+.
T Consensus 226 A~~m~~~~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~Em~ 300 (354)
T KOG1468|consen 226 AAAMKNHQVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAEMT 300 (354)
T ss_pred HHHHhcCCCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchHhe
Confidence 99999 89999999999999999999999999999999999999999999999999999999999999999975
No 16
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-44 Score=365.81 Aligned_cols=255 Identities=25% Similarity=0.320 Sum_probs=238.5
Q ss_pred hHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Q 006803 370 AVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIA 449 (630)
Q Consensus 370 AI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~ 449 (630)
.|-.+...+..+.+.|+.+.|+.++..|+++|.+.+| .+..+|++.++..++.|..+.|+..+.+|.+||+++.|+
T Consensus 10 ~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~rw----~~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliR 85 (353)
T KOG1465|consen 10 EISEFIAALKKRLVRGSYAIAIETLNLLRQIISRERW----STANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIR 85 (353)
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHH
Confidence 5666677788999999999999999999999999888 467799999999999999999999999999999999988
Q ss_pred hCC---------CC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 006803 450 KLP---------LT-------------------------LSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGD 495 (630)
Q Consensus 450 ~~~---------~~-------------------------~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgd 495 (630)
++. ++ .+..+.|+.+++.|++++.| |+..++.|+.++.++|++++
T Consensus 86 eE~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~E-ie~~~E~Ia~Qa~ehihsnE 164 (353)
T KOG1465|consen 86 EEVLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITE-IEGSRENIAVQAIEHIHSNE 164 (353)
T ss_pred HHHHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHH-HhhhhHhHHHHHHHHhccCc
Confidence 741 00 01134789999999999999 88999999999999999999
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecC
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSN 575 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aN 575 (630)
+|||+|.|.||+.||++|.++||+|+|||.|.-|.+||+.|++.|.++||.+|+|+|++++.+|++|++||+|+++|++|
T Consensus 165 viLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~avl~N 244 (353)
T KOG1465|consen 165 VILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLAN 244 (353)
T ss_pred eEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCcccccc
Q 006803 576 GTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLV 629 (630)
Q Consensus 576 G~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl~ 629 (630)
|++....|++++|++||||.+|||||++.||+|+.++++.+.++|+|.|++++.
T Consensus 245 Ggl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~ 298 (353)
T KOG1465|consen 245 GGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILP 298 (353)
T ss_pred CCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccC
Confidence 999999999999999999999999999999999999999999999999999875
No 17
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-43 Score=351.21 Aligned_cols=229 Identities=28% Similarity=0.341 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHh--CCCCCCHHHHHHHHH
Q 006803 388 ARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAK--LPLTLSETEAKAALC 465 (630)
Q Consensus 388 arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~--~~~~~s~~eaKe~L~ 465 (630)
+-++|.+.+|.++++... .++..+|...|+...+.|.+.-++++++..+.+-+.+.+.. +.+..+.+++|++++
T Consensus 28 a~~vAAIraL~~vL~~s~----a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~ 103 (313)
T KOG1466|consen 28 AMAVAAIRALLEVLRRSQ----ATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLL 103 (313)
T ss_pred hhHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 556666777777776543 36778999999999999999999999999997766665533 233446899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCC
Q 006803 466 NDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGL 545 (630)
Q Consensus 466 e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI 545 (630)
+..+.|++. ...+...|++.+.++|.||++|||||+|.+|+.+|..|+++++.|+|||+||||..+|..|+++|.+.||
T Consensus 104 erg~~F~~~-~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm~~~L~~~~I 182 (313)
T KOG1466|consen 104 ERGELFIER-ARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLMAKELKKLGI 182 (313)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEecCCCCCchhHHHHHHHhcCC
Confidence 999999975 6688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCC-cccccc
Q 006803 546 SCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDS-ICSNEL 621 (630)
Q Consensus 546 ~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds-~i~nEl 621 (630)
|||+|.|+|++|.|.+||+||+||+.|..||+++|+||||++|++||+.|+|||||+|+|||.+.+++++ ++++|+
T Consensus 183 PvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~ 259 (313)
T KOG1466|consen 183 PVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPAL 259 (313)
T ss_pred CeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccCccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 555553
No 18
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=2.6e-38 Score=321.97 Aligned_cols=201 Identities=20% Similarity=0.210 Sum_probs=169.1
Q ss_pred hhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCH
Q 006803 378 YLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSE 457 (630)
Q Consensus 378 ~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~ 457 (630)
..++.-.|+...++-+|..|+.-- .+ ...++.|.++||.+.-+.|..++++..- +...
T Consensus 6 ~~~d~~~Gs~~~~~~~l~~l~~~~------------~~-----~~~~~~l~~~~~~Ma~~~n~~~~~~~~~-----~~~~ 63 (253)
T PRK06372 6 LLSDNASGSADVAFKIISFFSHND------------ID-----ENIIKDLKNYFFGMGLVRNVCDSIISGP-----NLRP 63 (253)
T ss_pred hhcCccccHHHHHHHHHHHHhccc------------hh-----hhHHHHHHHhCcchHHHHHHHHHHHccC-----cCCH
Confidence 356778899988888877765421 11 1266778899999999999998887421 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH
Q 006803 458 TEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL 537 (630)
Q Consensus 458 ~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La 537 (630)
++.+.. +..+.+.|+++|.++| +|++|||||+|++|+.+|..+ ++.|+|||+||||++||+.|+
T Consensus 64 ~~~~~~------------~~~~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~---~~~~~V~v~ESrP~~eG~~~a 127 (253)
T PRK06372 64 KNLKLG------------IEKHEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSS---EKIKSVYILESRPMLEGIDMA 127 (253)
T ss_pred HHHHHH------------HHHHHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhc---CCCCEEEEecCCCchHHHHHH
Confidence 333221 3357788999999999 679999999999999999764 345899999999999999999
Q ss_pred HHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCc
Q 006803 538 RRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSI 616 (630)
Q Consensus 538 ~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~ 616 (630)
++|.+.||+||||+|++++++|++||+||+|||+|++||+++||+||+++|++||+|+|||||||++|||+++++.++.
T Consensus 128 ~~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~ 206 (253)
T PRK06372 128 KLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKIERNFLYSTY 206 (253)
T ss_pred HHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeeccccCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876654
No 19
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.54 E-value=0.0012 Score=67.21 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCC-ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGK-QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY 557 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~ 557 (630)
..+.|++.|+++|.+|++| -.+.++|+..++....+..+ .+.+.++-+ ....+..|.+.||++..+.+
T Consensus 6 ~K~~IA~~Aa~lI~dg~~I-gLgsGST~~~l~~~L~~~~~~~~~itvVt~-----S~~~a~~l~~~gi~v~~l~~----- 74 (220)
T PRK00702 6 LKKAAAEAAAEYVEDGMIV-GLGTGSTAAYFIDALGERVKEGLIIGGVPT-----SEASTELAKELGIPLFDLNE----- 74 (220)
T ss_pred HHHHHHHHHHHhCCCCCEE-EECCcHHHHHHHHHHHhhhccCCCEEEECC-----cHHHHHHHHhCCCeEEcHHH-----
Confidence 4567899999999999986 56778888878777654321 123333322 23345666678988652222
Q ss_pred HhccccEEEEcceeEecCCceecccchHHH--HHHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 558 IMHEVTRVFLGASSVLSNGTTYSRVGTACV--AMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 558 iM~~Vd~VivGAdaI~aNG~V~NKiGT~~l--AlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
+.++|+.|.|||.|-.+++++-.-|-..+ -++|..-+ -+|++++..||.++.- .-.+++|.
T Consensus 75 -~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~lg-~~~lPvEV 137 (220)
T PRK00702 75 -VDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVLG-KFPLPVEV 137 (220)
T ss_pred -CCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhcC-CCCccEEE
Confidence 34689999999999999887777554443 45544443 4899999999988653 23455663
No 20
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.45 E-value=0.0013 Score=66.96 Aligned_cols=126 Identities=19% Similarity=0.169 Sum_probs=82.2
Q ss_pred HHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCC--ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH
Q 006803 481 KVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGK--QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI 558 (630)
Q Consensus 481 ~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk--~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 558 (630)
+.|++.|+++|++|++|. .+.++|+..++....+..+ .+.+.|+-+ +...+..|.+.||++..+. -
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~~~~~L~~~~~~~~l~itvVt~-----S~~~a~~l~~~gi~v~~l~------~ 70 (218)
T TIGR00021 3 RAAAEAAAEYVEDGMVVG-LGTGSTVAYFIEALGERVKQEGLDIVGVPT-----SKQTAELARELGIPLSSLD------E 70 (218)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhhccCCCEEEEeC-----CHHHHHHHHHCCCCEEcHh------H
Confidence 468889999999999874 6777787777776654322 123333322 2344577777899875221 1
Q ss_pred hccccEEEEcceeEecCCceecccch-HHH-H-HHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 559 MHEVTRVFLGASSVLSNGTTYSRVGT-ACV-A-MVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aNG~V~NKiGT-~~l-A-laAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
+.++|..|.|||.|-.|++++ |-|. +.+ - ++| ....-||++|+..||.++.- .-.+++|.
T Consensus 71 ~~~iDiafdGaD~id~~~~~i-kg~g~a~~~eKiia-~~A~~~i~l~D~sK~~~~lg-~~plPvEV 133 (218)
T TIGR00021 71 VPELDLAIDGADEVDPNLQLI-KGGGGALLREKIVA-SASKRFIVIADESKLVDKLG-KFPLPVEV 133 (218)
T ss_pred CCccCEEEECCCeECCCCCEe-cccHHHHHHHHHHH-HhhCcEEEEEEchhhhcccC-CCCccEEE
Confidence 347899999999999999885 4333 222 1 222 22347899999999987653 33456664
No 21
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.32 E-value=0.0023 Score=64.67 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=81.7
Q ss_pred HHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcC----CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH
Q 006803 481 KVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELG----KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS 556 (630)
Q Consensus 481 ~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~g----k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~ 556 (630)
+.|++.|+++|.+|++|. .+.++|+..+++...+.. ++++|+ +-| ...+..|.+.||++.++-
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~l~~~L~~~~~~~~~~itvV-TnS------~~~a~~l~~~~i~vi~lg----- 69 (213)
T cd01398 3 RAAARAAVDYVEDGMVIG-LGTGSTVAYFIEALGERVREEGLNIVGV-PTS------FQTEELARELGIPLTDLD----- 69 (213)
T ss_pred HHHHHHHHHhCCCCCEEE-ECchHHHHHHHHHHHHhhhccCCCEEEE-eCc------HHHHHHHHhCCCeEEeCC-----
Confidence 568899999999999866 577778877777665432 244544 222 223456666688765544
Q ss_pred HHhccccEEEEcceeEecCCceecccchHHHHH-HHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 557 YIMHEVTRVFLGASSVLSNGTTYSRVGTACVAM-VAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 557 ~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAl-aAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
---++|+.|+|||.|-.++.+..--|-..+-- +......-+|++++..||..+.- .-.+++|.
T Consensus 70 -~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~-~~~lPvEV 133 (213)
T cd01398 70 -EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLG-EFPLPVEV 133 (213)
T ss_pred -CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCC-CCCeeEEE
Confidence 11268999999999998876554444333321 12234557899999999988654 23456664
No 22
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=96.65 E-value=0.029 Score=58.00 Aligned_cols=124 Identities=11% Similarity=0.169 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CC-CcEEEEc-----
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KG-LSCTYTH----- 551 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~G-I~vTlI~----- 551 (630)
..+.|++.|+.+|.+|++|+ ++.++|+..++..... ...++|+.. +...+.+|.+ .+ +.+.++-
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIf-ld~GtT~~~la~~L~~-~~~ltVvTn-------sl~ia~~l~~~~~~~~v~l~GG~~~~ 147 (256)
T PRK10434 77 KKELIAEAAVSLIHDGDSII-LDAGSTVLQMVPLLSR-FNNITVMTN-------SLHIVNALSELDNEQTILMPGGTFRK 147 (256)
T ss_pred HHHHHHHHHHhhCCCCCEEE-EcCcHHHHHHHHHhcc-CCCeEEEEC-------CHHHHHHHhhCCCCCEEEEECCEEeC
Confidence 35689999999999999998 4566676666666533 224555532 2345677765 33 4544332
Q ss_pred --chhH----HHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 552 --INAV----SYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 552 --DsAv----~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
.+.+ -..+. .+|+.|+||+.|-.++++...--...+--++-....-+|++|+..||....
T Consensus 148 ~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~~~~ 215 (256)
T PRK10434 148 KSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRKS 215 (256)
T ss_pred CCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccCCce
Confidence 1112 22233 699999999999988776543323444445555688889999999997553
No 23
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=96.27 E-value=0.051 Score=56.09 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEc------
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTH------ 551 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~------ 551 (630)
..+.|++.|+.+|.+|++|+- +.++|++.+...... +.++|+.. +...+..|.+ .++.+.++-
T Consensus 79 ~K~~IA~~Aa~~I~~g~~Ifl-d~GsT~~~la~~L~~--~~ltVvTn-------sl~ia~~l~~~~~~~v~l~GG~~~~~ 148 (251)
T PRK13509 79 EKVRIAKAASQLCNPGESVVI-NCGSTAFLLGRELCG--KPVQIITN-------YLPLANYLIDQEHDSVIIMGGQYNKS 148 (251)
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHhCC--CCeEEEeC-------CHHHHHHHHhCCCCEEEEECCeEcCC
Confidence 356899999999999999885 445565666655432 34555432 2234566654 344433221
Q ss_pred -----chhHHHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 552 -----INAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 552 -----DsAv~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
... ...|. ++|+.|+||+.|-.+|-...-.....+--++-....-+|++|++.||....
T Consensus 149 ~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~~~ 214 (251)
T PRK13509 149 QSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERA 214 (251)
T ss_pred cceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCcee
Confidence 122 23444 689999999999877655444444444444445567789999999997653
No 24
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=96.22 E-value=0.077 Score=55.42 Aligned_cols=123 Identities=12% Similarity=0.161 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEc-------
Q 006803 480 DKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTH------- 551 (630)
Q Consensus 480 ~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~------- 551 (630)
.+.|++.|+++|.+|++|+- +.++|+..++.... ..+.++||.- +...+..|.. .++.+.++-
T Consensus 93 K~~IA~~Aa~~I~dgd~Ifl-d~GtT~~~la~~L~-~~~~ltVvTn-------sl~ia~~l~~~~~~~v~llGG~~~~~~ 163 (269)
T PRK09802 93 KRSVAKAAVELIQPGHRVIL-DSGTTTFEIARLMR-KHTDVIAMTN-------GMNVANALLEAEGVELLMTGGHLRRQS 163 (269)
T ss_pred HHHHHHHHHhhCCCCCEEEE-CCchHHHHHHHhcC-cCCCeEEEeC-------CHHHHHHHHhCCCCEEEEECCEEecCC
Confidence 46899999999999999985 55556666665542 2335666642 2334566664 366554332
Q ss_pred ----chhHHHHhc--cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 552 ----INAVSYIMH--EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 552 ----DsAv~~iM~--~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
....-..|. .+|+.|+||+.|-.++++.. -.-...+--++-...--+|++|+..||....
T Consensus 164 ~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~~~~ 230 (269)
T PRK09802 164 QSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSS 230 (269)
T ss_pred CceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccCCcc
Confidence 112222333 69999999999987766653 4444555555555666779999999997543
No 25
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=96.19 E-value=0.081 Score=51.10 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhC-CCcEEEEc------
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAK-GLSCTYTH------ 551 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTlI~------ 551 (630)
..++|++.++++|.+|++|.- +.++|+..+...... .++++|+-- ...++.+|.+. ++.+.++-
T Consensus 5 ~K~~IA~~A~~~I~~~~~Ifl-d~GtT~~~la~~L~~-~~~ltVvTn-------sl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 5 EKRAIARKAASLIEDGDTIFL-DSGTTTLELAKYLPD-KKNLTVVTN-------SLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred HHHHHHHHHHHhCCCCCEEEE-ECchHHHHHHHHhhc-CCceEEEEC-------CHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 356899999999999999764 455566666666543 225555522 23355677765 33333321
Q ss_pred -----chhHHHHhc--cccEEEEcceeEecC-CceecccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 552 -----INAVSYIMH--EVTRVFLGASSVLSN-GTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 552 -----DsAv~~iM~--~Vd~VivGAdaI~aN-G~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
...+-..|. ++|+.|+|++.|-.+ |-...-..-..+--+.-.+.--+|++|+..||...-
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~~~ 143 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGRNS 143 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCCee
Confidence 111222223 699999999999985 545455666666666666677899999999997654
No 26
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=95.76 E-value=0.15 Score=52.35 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEc------
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTH------ 551 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~------ 551 (630)
..+.|++.|+++|++|++|.- +.++|+..+.....+ +.++|+.- +...+..|.. .++.+.++-
T Consensus 79 ~K~~IA~~Aa~lI~~gd~Ifl-d~GtT~~~l~~~L~~--~~ltVvTN-------s~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 79 HKADIAREALAWIEEGMVIAL-DASSTCWYLARQLPD--INIQVFTN-------SHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHhCCCCCEEEE-cCcHHHHHHHHhhCC--CCeEEEeC-------CHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 356899999999999998875 555566666655532 24555531 2334556654 355543221
Q ss_pred -----chhHHHHhc--cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEeccccccccc
Q 006803 552 -----INAVSYIMH--EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICCEAYKFHER 610 (630)
Q Consensus 552 -----DsAv~~iM~--~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~aet~Kf~~r 610 (630)
....-..+. ++|+.|+||+.|-.+|++.. -.=.+.+--.+-....-+|++|+..||...
T Consensus 149 ~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~~ 215 (240)
T PRK10411 149 YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRS 215 (240)
T ss_pred CCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCCc
Confidence 121222233 69999999999987666554 344455555555566777999999999754
No 27
>PLN02384 ribose-5-phosphate isomerase
Probab=95.23 E-value=0.37 Score=50.72 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=83.9
Q ss_pred HHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCc--eE-EEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH
Q 006803 482 VIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQ--FR-VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI 558 (630)
Q Consensus 482 ~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~--f~-ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 558 (630)
..+..|+++|++|.+ +=.|..+||..+|....+..+. ++ +.++-|. .+....+.+.||+.+-+.+
T Consensus 38 ~aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS-----~~T~~~a~~~GIpl~~l~~------ 105 (264)
T PLN02384 38 IAAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS-----KKTHEQAVSLGIPLSDLDS------ 105 (264)
T ss_pred HHHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcCc-----HHHHHHHHHcCCcEecccc------
Confidence 456667889999876 6788889998888776653332 33 5555442 2334556678999776654
Q ss_pred hccccEEEEcceeEecCCceecccchHHHH--HHHHhCCCcEEEecccccccccccC-CCcccccc
Q 006803 559 MHEVTRVFLGASSVLSNGTTYSRVGTACVA--MVAHAFRVPVLICCEAYKFHERVQL-DSICSNEL 621 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aNG~V~NKiGT~~lA--laAk~~~VPV~V~aet~Kf~~r~~~-ds~i~nEl 621 (630)
..++|..|=|||-|-.|+.++=-=|...+- ++|.. ..-|+++++..|+.++.-. .--+++|.
T Consensus 106 v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~-A~~~IiI~DesK~V~~Lg~~~~plPVEV 170 (264)
T PLN02384 106 HPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGA-CKKFVVIVDESKLVKHIGGSGLAMPVEV 170 (264)
T ss_pred CCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHh-cCeEEEEEeCcceecccCCCCCCEEEEE
Confidence 457899999999999998877666643321 22222 2368899999999864421 11356664
No 28
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=95.03 E-value=0.45 Score=49.32 Aligned_cols=124 Identities=16% Similarity=0.177 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-------
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH------- 551 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~------- 551 (630)
....|++.|+++|++|++|+--| ++|.+.+...... ..+++|+.- +...+..|.... .+++|.
T Consensus 77 eK~~IA~~Aa~lI~~g~~ifld~-GTT~~~la~~L~~-~~~ltviTN-------sl~ia~~l~~~~-~~~vi~~GG~~~~ 146 (253)
T COG1349 77 EKRAIAKAAATLIEDGDTIFLDA-GTTTLALARALPD-DNNLTVITN-------SLNIAAALLEKP-NIEVILLGGTVRK 146 (253)
T ss_pred HHHHHHHHHHhhCCCCCEEEECC-CcHHHHHHHHhCc-CCCeEEEeC-------CHHHHHHHHhCC-CCeEEEeCcEEEc
Confidence 35689999999999999998644 4444555544432 233666532 344566666654 333322
Q ss_pred ------chhHHHHhc--cccEEEEcceeEecCCceeccc-chHHHHHHHHhCCCcEEEeccccccccccc
Q 006803 552 ------INAVSYIMH--EVTRVFLGASSVLSNGTTYSRV-GTACVAMVAHAFRVPVLICCEAYKFHERVQ 612 (630)
Q Consensus 552 ------DsAv~~iM~--~Vd~VivGAdaI~aNG~V~NKi-GT~~lAlaAk~~~VPV~V~aet~Kf~~r~~ 612 (630)
....-..+. .+|+.|+|++.|-.++++...- .-+.+.-..-....-+|+++.+.||.....
T Consensus 147 ~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~~~~ 216 (253)
T COG1349 147 KSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGRVAP 216 (253)
T ss_pred CCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCCcee
Confidence 122233333 6999999999999887776654 344444455556677889999999976543
No 29
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=94.96 E-value=0.26 Score=51.06 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEc------
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTH------ 551 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~------ 551 (630)
..+.|+..|+++|.+|++|+-- .++|+..++..... .+.++|+- - +...+..|.. .++.+.++-
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIflD-~GtT~~~la~~L~~-~~~ltVvT-N------sl~ia~~l~~~~~~~villGG~~~~~ 147 (252)
T PRK10906 77 EKERIARKVASQIPNGATLFID-IGTTPEAVAHALLN-HSNLRIVT-N------NLNVANTLMAKEDFRIILAGGELRSR 147 (252)
T ss_pred HHHHHHHHHHhhCCCCCEEEEc-CcHHHHHHHHHhcC-CCCcEEEE-C------cHHHHHHHhhCCCCEEEEECCEEecC
Confidence 3568999999999999999854 44555555555432 23455552 2 2334566654 345443321
Q ss_pred -chhHHH----Hhc--cccEEEEcceeEecCCce-ecccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 552 -INAVSY----IMH--EVTRVFLGASSVLSNGTT-YSRVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 552 -DsAv~~----iM~--~Vd~VivGAdaI~aNG~V-~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
.+.++. .+. .+|+.|+||+.|-.++++ .+-..-+.+--..-...--+|++|++.||....
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~~~ 215 (252)
T PRK10906 148 DGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNA 215 (252)
T ss_pred CCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCCcc
Confidence 122222 222 699999999999877554 444455555555555666789999999997543
No 30
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=94.48 E-value=0.71 Score=47.71 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCC--ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH
Q 006803 480 DKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGK--QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY 557 (630)
Q Consensus 480 ~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk--~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~ 557 (630)
.+..++.|+++|++|.+ +=.|..+|+..+|....++.+ .+++.++-|. ......+.+.|||..-+.+
T Consensus 8 K~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS-----~~t~~~a~~~Gipl~~l~~----- 76 (228)
T PRK13978 8 KLMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCTS-----NKIAFLAKELGIKICEIND----- 76 (228)
T ss_pred HHHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeCc-----HHHHHHHHHcCCcEechhh-----
Confidence 34566778899999876 678888999988876654322 2456655432 1233555678999766554
Q ss_pred HhccccEEEEcceeEecCCceecccchHH-----HHHHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 558 IMHEVTRVFLGASSVLSNGTTYSRVGTAC-----VAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 558 iM~~Vd~VivGAdaI~aNG~V~NKiGT~~-----lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
..++|..|=|||-|-.|+.++--=|-.. +|.+| .-|+|+++..|+.++.-..-.+++|.
T Consensus 77 -~~~iDiaiDGADevd~~lnlIKGgGgal~rEKiva~~A----~~~iii~D~sK~v~~Lg~~~plPVEV 140 (228)
T PRK13978 77 -VDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMA----SRFVVVVDETKIVQYLGETFKLPVEV 140 (228)
T ss_pred -CCceeEEEecCceecCCccEEecCcHHHHHHHHHHHhc----CcEEEEEeCcceecccCCCCCeEEEE
Confidence 3578999999999999998875555433 23333 36788999999986543222455553
No 31
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=93.95 E-value=0.94 Score=46.80 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEc-------
Q 006803 480 DKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTH------- 551 (630)
Q Consensus 480 ~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~------- 551 (630)
.+.|++.|+++|.+|++|+.=+ ++|++.+.+.... ...++|+-. +...+.+|.+ .++.+.++-
T Consensus 79 K~~IA~~Aa~lI~~g~tIflD~-GtT~~~la~~L~~-~~~ltvvTn-------sl~i~~~l~~~~~~~villGG~~~~~~ 149 (252)
T PRK10681 79 KRRAAQLAATLVEPNQTLFFDC-GTTTPWIIEAIDN-ELPFTAVCY-------SLNTFLALQEKPHCRAILCGGEFHASN 149 (252)
T ss_pred HHHHHHHHHhhcCCCCEEEEEC-CccHHHHHHhcCC-CCCeEEEEC-------CHHHHHHHhhCCCCEEEEECcEEecCc
Confidence 5689999999999999998654 4454555554422 124555532 2234566654 344433321
Q ss_pred ----chhHHHHhc--cccEEEEcceeEecCCce-ecccchHHHHHHHHhCCCcEEEeccccccccc
Q 006803 552 ----INAVSYIMH--EVTRVFLGASSVLSNGTT-YSRVGTACVAMVAHAFRVPVLICCEAYKFHER 610 (630)
Q Consensus 552 ----DsAv~~iM~--~Vd~VivGAdaI~aNG~V-~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r 610 (630)
....-..+. .+|+.|+||+.|-..+++ ..-.--+.+.-+.-...--+|++|+..||...
T Consensus 150 ~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~~ 215 (252)
T PRK10681 150 AIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKV 215 (252)
T ss_pred ceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCce
Confidence 111112223 699999999999876554 34444445544444556668999999999754
No 32
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.04 E-value=4.6 Score=41.86 Aligned_cols=128 Identities=14% Similarity=0.103 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCC-ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH
Q 006803 480 DKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGK-QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI 558 (630)
Q Consensus 480 ~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 558 (630)
.+..+..|++++.+| .|+=.|..+|+..+|....+..+ .+.+..+-|. .+....+.+.||+++-+.+
T Consensus 7 K~~aa~~A~~~v~~g-mviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS-----~~t~~l~~~~GI~v~~l~~------ 74 (227)
T COG0120 7 KKAAAKAALEYVKDG-MVIGLGTGSTAAYFIEALGRRVKGELDIGGVPTS-----FQTEELARELGIPVSSLNE------ 74 (227)
T ss_pred HHHHHHHHHHHhcCC-CEEEEcCcHHHHHHHHHHHHhhccCccEEEEeCC-----HHHHHHHHHcCCeecCccc------
Confidence 345567788999885 56678899999999998863211 1555555442 3445778889998877665
Q ss_pred hccccEEEEcceeEecCCceecccchHHHH-HHHHhCCCcEEEecccccccccccCCCccccc
Q 006803 559 MHEVTRVFLGASSVLSNGTTYSRVGTACVA-MVAHAFRVPVLICCEAYKFHERVQLDSICSNE 620 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aNG~V~NKiGT~~lA-laAk~~~VPV~V~aet~Kf~~r~~~ds~i~nE 620 (630)
...+|..|=|||-|-.++.++--=|.+.+= =+-.+...-|+|+++..|+.++.- --.+++|
T Consensus 75 ~~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG-~fplPVE 136 (227)
T COG0120 75 VDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLG-KFPLPVE 136 (227)
T ss_pred cCccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhcC-CCCcCEE
Confidence 456899999999999998888776665431 111223567899999999966543 2333444
No 33
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.53 E-value=3.6 Score=36.37 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=65.9
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHh-----ccccEEEEccee
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIM-----HEVTRVFLGASS 571 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM-----~~Vd~VivGAda 571 (630)
|+..|++.....+++...+.+ ..|+++|..|.. ...+.+.|+++.+ -|..=-..| .+++.||+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~-----~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~vv~~~~- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPER-----VEELREEGVEVIY-GDATDPEVLERAGIEKADAVVILTD- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHH-----HHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESEEEEESS-
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHH-----HHHHHhccccccc-ccchhhhHHhhcCccccCEEEEccC-
Confidence 577888888888888877633 788888887653 7888899987655 443323333 36888887765
Q ss_pred EecCCceecccchHHHHHHHHh-CC-CcEEEeccccccc
Q 006803 572 VLSNGTTYSRVGTACVAMVAHA-FR-VPVLICCEAYKFH 608 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~-~~-VPV~V~aet~Kf~ 608 (630)
+...+..+++.|+. +. +++++.+...+..
T Consensus 72 --------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~ 102 (116)
T PF02254_consen 72 --------DDEENLLIALLARELNPDIRIIARVNDPENA 102 (116)
T ss_dssp --------SHHHHHHHHHHHHHHTTTSEEEEEESSHHHH
T ss_pred --------CHHHHHHHHHHHHHHCCCCeEEEEECCHHHH
Confidence 66778899999997 43 6777776665543
No 34
>PRK04311 selenocysteine synthase; Provisional
Probab=83.23 E-value=26 Score=39.77 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=60.4
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCC--chHHHHHHHHHhCCCcEEEEcc------hhHH
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPK--HEGQALLRRLLAKGLSCTYTHI------NAVS 556 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~--~eG~~La~eL~~~GI~vTlI~D------sAv~ 556 (630)
+..++++...+.++|-+++..+..+| .+...| -+|+|.+..-+ ....++.+.+...|+.+.++.. ..+.
T Consensus 134 ~~lA~l~Gae~a~vv~sgtaAl~l~l-~~l~~G--deVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle 210 (464)
T PRK04311 134 ALLCALTGAEDALVVNNNAAAVLLAL-NALAAG--KEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYE 210 (464)
T ss_pred HHHHHHhCCCeEEEECCHHHHHHHHH-HHhCCC--CEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHH
Confidence 33444554446666666555554444 444433 47888764222 2224455667788988777642 1223
Q ss_pred HHhc-cccEEEEcceeEec-CCceecccchHHHHHHHHhCCCcEEEec
Q 006803 557 YIMH-EVTRVFLGASSVLS-NGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 557 ~iM~-~Vd~VivGAdaI~a-NG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
..+. +..+|++-..+-+. .| ....+---.++-+||.||+|++|=+
T Consensus 211 ~aI~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 211 QAINENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred HhcCccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 3343 33343333221111 12 1122345668899999999999954
No 35
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=82.69 E-value=10 Score=42.31 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=77.4
Q ss_pred HHHHHHHHHHH----hhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--
Q 006803 478 LADKVIVRHAA----TKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-- 551 (630)
Q Consensus 478 ~A~~~Ia~~a~----~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-- 551 (630)
.|.++|+++.. ..|..+|++||-|++..++..|...+.-|.++ +=-||.+-=... +-.-.||.+.|.-
T Consensus 107 ~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNI----LlPrPGfp~Y~~--~a~~~~lEVR~ydlL 180 (447)
T KOG0259|consen 107 PARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANI----LLPRPGFPLYDT--RAIYSGLEVRYYDLL 180 (447)
T ss_pred HHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCce----ecCCCCCchHHH--hhhhcCceeEeeccc
Confidence 35556666543 35667899999999999998888876555442 224666532211 1123577776643
Q ss_pred --------chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 552 --------INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 552 --------DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
...+-++..+=++.|+=-.==-.+|.|+.+-=--.+|-.|+.++|+|+-
T Consensus 181 Pe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 181 PEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred CcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 3677777775444444222234678999998889999999999999874
No 36
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=82.11 E-value=15 Score=33.53 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=37.8
Q ss_pred HHhCCCcEEEEc---chhHHHHhc-----cccEEEEcceeEecCCceecc-cchHHHHHHHHhCC--CcEEEec
Q 006803 540 LLAKGLSCTYTH---INAVSYIMH-----EVTRVFLGASSVLSNGTTYSR-VGTACVAMVAHAFR--VPVLICC 602 (630)
Q Consensus 540 L~~~GI~vTlI~---DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~NK-iGT~~lAlaAk~~~--VPV~V~a 602 (630)
+...|+++..+. ++...-++. ++|++++|++.- |.+.-. .|+....-+.++.. +||+|+.
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 345677765444 243444444 689999999864 333322 35445556677888 9999985
No 37
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=81.99 E-value=4.6 Score=42.27 Aligned_cols=106 Identities=24% Similarity=0.225 Sum_probs=73.0
Q ss_pred eecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCc----EEEEcchhHHHHhccccEEEEcceeEe
Q 006803 499 TYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS----CTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 499 T~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~----vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
..|-|+.+ ..+++.+.++|...+|.+++-++...- ...+...++. +-+.....+...|..||.||-=|..+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc---chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 34555544 466677777786667777775554322 2234444433 333334677888999999998888777
Q ss_pred cCCc-------eecccchHHHHHHHHhCCCcEEEecccccc
Q 006803 574 SNGT-------TYSRVGTACVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 574 aNG~-------V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf 607 (630)
..|. -+|--||-.|.-+|+.++|+.+|.+.+.-.
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~v 119 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISV 119 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcce
Confidence 7662 347799999999999999999998877654
No 38
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=80.23 E-value=36 Score=29.06 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=47.3
Q ss_pred HHHHHHHcCCceEEEEcCCCCCc-----------hHHHHHHHHH----hCCCcEEEEc--chhHHHHhc-----cccEEE
Q 006803 509 ILLYAHELGKQFRVVVVDSRPKH-----------EGQALLRRLL----AKGLSCTYTH--INAVSYIMH-----EVTRVF 566 (630)
Q Consensus 509 vL~~A~e~gk~f~ViV~ESRP~~-----------eG~~La~eL~----~~GI~vTlI~--DsAv~~iM~-----~Vd~Vi 566 (630)
.+..|...+..++++.+...+.. +.++....+. ..|+++++.. ......++. ++|+|+
T Consensus 19 a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvv 98 (130)
T cd00293 19 AARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIV 98 (130)
T ss_pred HHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEE
Confidence 33334445667775555433322 3444443333 3688875543 332334443 579999
Q ss_pred EcceeEecCCceec-ccchHHHHHHHHhCCCcEEEe
Q 006803 567 LGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 567 vGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ 601 (630)
+|+..- +.+.. ..|... --+.+..++||+++
T Consensus 99 ig~~~~---~~~~~~~~~~~~-~~ll~~~~~pvliv 130 (130)
T cd00293 99 MGSRGR---SGLRRLLLGSVA-ERVLRHAPCPVLVV 130 (130)
T ss_pred EcCCCC---CccceeeeccHH-HHHHhCCCCCEEeC
Confidence 998642 22222 234333 34446688999874
No 39
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=79.50 E-value=62 Score=32.66 Aligned_cols=98 Identities=11% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-chhHHH---
Q 006803 482 VIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-INAVSY--- 557 (630)
Q Consensus 482 ~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsAv~~--- 557 (630)
..++...+.+.++..|+.+|+.+.......-+.+-.++|. +.+.|+++.... |.....
T Consensus 29 ~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~------------------~~r~gl~a~~l~~d~~~~ta~a 90 (196)
T PRK10886 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFE------------------TERPSLPAIALNTDNVVLTAIA 90 (196)
T ss_pred HHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhcccc------------------ccCCCcceEEecCcHHHHHHHh
Confidence 3444555667889999999988754322222222111111 113367777553 333222
Q ss_pred ---------------HhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 558 ---------------IMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 558 ---------------iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.+..=|.+|+ |...|..-| ...++-.||.+|+|+++++..
T Consensus 91 nd~~~~~~f~~ql~~~~~~gDvli~----iS~SG~s~~---v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 91 NDRLHDEVYAKQVRALGHAGDVLLA----ISTRGNSRD---IVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred ccccHHHHHHHHHHHcCCCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCEEEEEeCC
Confidence 2445566664 334554332 456778899999999998753
No 40
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=78.54 E-value=63 Score=36.64 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=61.3
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC-C-CchHHHHHHHHHhCCCcEEEEcc------hhHH
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR-P-KHEGQALLRRLLAKGLSCTYTHI------NAVS 556 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR-P-~~eG~~La~eL~~~GI~vTlI~D------sAv~ 556 (630)
+..++++...+.+++-+++..+..+| .+...| -+|+|.+.. + +....++.+.+...|+.+..+.. ..+-
T Consensus 129 ~~lA~l~gae~alvv~sg~aAi~l~l-~~l~~G--deVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle 205 (454)
T TIGR00474 129 GLLCELTGAEDALVVNNNAAAVLLAL-NTLAKG--KEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYE 205 (454)
T ss_pred HHHHHHhCCCcEEEECCHHHHHHHHH-HHhCCc--CEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHH
Confidence 33445554445665544444444444 444434 478887653 3 22334555667788999888732 1222
Q ss_pred HHhc-cccEEEEcceeEec-CCceecccchHHHHHHHHhCCCcEEEec
Q 006803 557 YIMH-EVTRVFLGASSVLS-NGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 557 ~iM~-~Vd~VivGAdaI~a-NG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
..+. +..+|++-..+.+. +|. ...+-...++-+||.||++++|=+
T Consensus 206 ~aI~~~T~lv~~~h~sN~~~~G~-~~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 206 DAITENTALLLKVHTSNYRIVGF-TEEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred HhcCcCCEEEEEEccCcccccCC-CCCCCHHHHHHHHHHcCCeEEEEC
Confidence 2333 33344433222221 231 123446678999999999999843
No 41
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=77.83 E-value=25 Score=37.99 Aligned_cols=137 Identities=12% Similarity=0.061 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCC-------------ceEEE
Q 006803 457 ETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGK-------------QFRVV 523 (630)
Q Consensus 457 ~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk-------------~f~Vi 523 (630)
.+++.+.+.+.++.|... ....+.+.+..++++....+++|-|.+..+..+|..+.+.|. ...|+
T Consensus 26 ~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi 103 (363)
T TIGR01437 26 SDEVADAQKRGAQNYFEI--KELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVV 103 (363)
T ss_pred CHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEE
Confidence 345555555555444332 122334444555555444678888887777767766655554 23677
Q ss_pred EcCCCCCchHH--HHHHHHHhCCCcEEEEc------chhHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhC
Q 006803 524 VVDSRPKHEGQ--ALLRRLLAKGLSCTYTH------INAVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF 594 (630)
Q Consensus 524 V~ESRP~~eG~--~La~eL~~~GI~vTlI~------DsAv~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~ 594 (630)
+ .+|.+... ....-+...|....++. -..+-..+. +...+++-..--...|.+.. + -.++-+|+.|
T Consensus 104 ~--~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~-~--~~i~~~a~~~ 178 (363)
T TIGR01437 104 L--PKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS-V--EDAAQVAQEH 178 (363)
T ss_pred E--ECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC-H--HHHHHHHHHc
Confidence 6 34544321 12223344565555442 123333443 33323211000012333333 2 4588899999
Q ss_pred CCcEEE
Q 006803 595 RVPVLI 600 (630)
Q Consensus 595 ~VPV~V 600 (630)
|+||+|
T Consensus 179 gi~viv 184 (363)
T TIGR01437 179 NLPLIV 184 (363)
T ss_pred CCeEEE
Confidence 999987
No 42
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=77.74 E-value=38 Score=32.92 Aligned_cols=123 Identities=15% Similarity=0.083 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhhc--cCCCEEEeecChH----HHHHHHHHHHHcCCceEEEEcCCCCCchH-H-HHHHHHHhCCCcE
Q 006803 476 IILADKVIVRHAATKV--RDGDVLLTYGSSC----VVEMILLYAHELGKQFRVVVVDSRPKHEG-Q-ALLRRLLAKGLSC 547 (630)
Q Consensus 476 i~~A~~~Ia~~a~~~I--~dgdvILT~g~S~----tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~-~La~eL~~~GI~v 547 (630)
++.|-..++++...++ ..+..|+.+|-++ --+.+.+++++.|....|+++.-...... . .-...+.+.|+++
T Consensus 5 ME~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 5 MENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 4457778888888888 7778888887554 44555666677888888866654433322 2 3347788889877
Q ss_pred EEE-cchhHHHHhccccEEEEcceeEecCCceecccc-hHHHHHHHHhCCCcEEEe
Q 006803 548 TYT-HINAVSYIMHEVTRVFLGASSVLSNGTTYSRVG-TACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 548 TlI-~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiG-T~~lAlaAk~~~VPV~V~ 601 (630)
... .+......+..+|.|| |+|+-.|---.--| ...+.-.++.++.|++-+
T Consensus 85 ~~~~~~~~~~~~~~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viAi 137 (169)
T PF03853_consen 85 IELDSDEDLSEALEPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIAI 137 (169)
T ss_dssp ESSCCGSGGGHHGSCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEEE
T ss_pred eeccccchhhcccccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEEe
Confidence 653 4445555666788886 67887774433333 333334455667775543
No 43
>PRK05973 replicative DNA helicase; Provisional
Probab=77.67 E-value=24 Score=36.76 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=63.3
Q ss_pred hccCCCEEEeecChH-----HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEE-----EEcc----hhH
Q 006803 490 KVRDGDVLLTYGSSC-----VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCT-----YTHI----NAV 555 (630)
Q Consensus 490 ~I~dgdvILT~g~S~-----tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vT-----lI~D----sAv 555 (630)
-|..|+.+|..|.++ .++.++..+.++|.+.-.|-.|-.| ..+..++...|++.. ++.| -..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~----~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~ 135 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE----QDVRDRLRALGADRAQFADLFEFDTSDAICA 135 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH----HHHHHHHHHcCCChHHhccceEeecCCCCCH
Confidence 346688999888766 4567777777777654444445443 234555566666421 1111 112
Q ss_pred HHHhc------cccEEEEcceeEecCCceecccch--HHHHHHHHhCCCcEEEeccccccc
Q 006803 556 SYIMH------EVTRVFLGASSVLSNGTTYSRVGT--ACVAMVAHAFRVPVLICCEAYKFH 608 (630)
Q Consensus 556 ~~iM~------~Vd~VivGAdaI~aNG~V~NKiGT--~~lAlaAk~~~VPV~V~aet~Kf~ 608 (630)
.+++. +++.|||=-=..+..+.--...+. ..+-..|+.+|||++++++.....
T Consensus 136 ~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~ 196 (237)
T PRK05973 136 DYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSF 196 (237)
T ss_pred HHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCcccc
Confidence 23332 356666522111111110012222 346678999999999999887653
No 44
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=76.47 E-value=23 Score=31.61 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=61.2
Q ss_pred CCEEEeecChH--HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-----hhHHHHhc--cccE
Q 006803 494 GDVLLTYGSSC--VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-----NAVSYIMH--EVTR 564 (630)
Q Consensus 494 gdvILT~g~S~--tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----sAv~~iM~--~Vd~ 564 (630)
|.++++++.+. -+..++...++ ..|++|.+++ .++.|.+.||+|+.+.. ..+..++. ++|.
T Consensus 1 g~vl~s~~~~~k~~~~~~~~~l~~--~G~~l~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~ 70 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAE--LGFKLVATEG--------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQL 70 (110)
T ss_pred CeEEEEEEcCcHhHHHHHHHHHHH--CCCEEEEchH--------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEE
Confidence 34566666444 23344444444 4688987764 56778899999887633 33444444 6999
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
||--.+ +.- .....|.+=-+|-.||||++-..++-
T Consensus 71 vIn~~~-----~~~-~~~~~~~iRR~Av~~~ipl~T~~~ta 105 (110)
T cd01424 71 VINTPS-----GKR-AIRDGFSIRRAALEYKVPYFTTLDTA 105 (110)
T ss_pred EEECCC-----CCc-cCccHHHHHHHHHHhCCCEEecHHHH
Confidence 987542 221 12345788889999999999655443
No 45
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.23 E-value=13 Score=41.51 Aligned_cols=72 Identities=22% Similarity=0.127 Sum_probs=48.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
.+..|+.+|...+=+.+...+.+.| ++|+++|.++......+...|.+.||.+.+-.+.. ....+|.||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 4668888887776555555555555 57888998876555566788999999875433222 334578888765
No 46
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=76.01 E-value=42 Score=37.58 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---------CEEEeecChHHHHHHHHHHHHcCCceEEEEc-CCCCCch
Q 006803 463 ALCNDIDRFINEKIILADKVIVRHAATKVRDG---------DVLLTYGSSCVVEMILLYAHELGKQFRVVVV-DSRPKHE 532 (630)
Q Consensus 463 ~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dg---------dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~-ESRP~~e 532 (630)
.+......|++. +...+......+.+.+.+. ..|..+.-...+......+..+-+. .|.++ +|--.+-
T Consensus 183 ~~~~~~~~Y~~~-lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~-~V~l~Y~smyg~T 260 (388)
T COG0426 183 ELLPDMRKYYAN-LMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKG-KVDLIYDSMYGNT 260 (388)
T ss_pred HHHHHHHHHHHH-hhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHHccCCcc-eEEEEEecccCCH
Confidence 566666777765 4355666666777766651 2333333444566666655544344 34333 4433332
Q ss_pred H---HHHHHHHHhCCCcEEEEcc--hhHHHHhc---cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 533 G---QALLRRLLAKGLSCTYTHI--NAVSYIMH---EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 533 G---~~La~eL~~~GI~vTlI~D--sAv~~iM~---~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
+ +.++..|.+.|+.+.++-+ +..+.++. +++.++||.-.+ |+++.-++++..--+.+..++--..++-++
T Consensus 261 ~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS 338 (388)
T COG0426 261 EKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLALAPKNKLAGVFGS 338 (388)
T ss_pred HHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhccCcCceEEEEec
Confidence 2 2334778889999888754 45788877 689999999877 577999999999999988775544555566
Q ss_pred cc
Q 006803 605 YK 606 (630)
Q Consensus 605 ~K 606 (630)
|=
T Consensus 339 ~G 340 (388)
T COG0426 339 YG 340 (388)
T ss_pred cC
Confidence 64
No 47
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.50 E-value=20 Score=39.42 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.+.+|+..|.++.-..+.+.+.+.|. .|+++|..+...=.....+|.+.|+.+ +........+...|.||+++..-
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELGIEL--VLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCCEE--EeCCcchhHhhcCCEEEECCCCC
Confidence 46788888988865666666666664 566666654222233346677778763 32222234566789998877532
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..| .+...|+++|||++-
T Consensus 80 ~~~----------~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 80 LDS----------PPVVQAHKKGIEVIG 97 (450)
T ss_pred CCC----------HHHHHHHHCCCcEEe
Confidence 222 245555666666654
No 48
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=73.76 E-value=44 Score=30.22 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-------hhHHHHhc--cccEEEEcceeEecCCc
Q 006803 507 EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-------NAVSYIMH--EVTRVFLGASSVLSNGT 577 (630)
Q Consensus 507 ~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~--~Vd~VivGAdaI~aNG~ 577 (630)
+.+.....+ ..|++|.+++ .++.|.+.||+|+.+.. +....+.. ++|+||-=. +|.
T Consensus 15 ~~~a~~l~~--~G~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~-----~~~ 79 (112)
T cd00532 15 VDLAPKLSS--DGFPLFATGG--------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLR-----DPR 79 (112)
T ss_pred HHHHHHHHH--CCCEEEECcH--------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcC-----CCC
Confidence 344444443 4689998865 56778889999988632 24445554 588887533 333
Q ss_pred e--ecccchHHHHHHHHhCCCcEEEecccccc
Q 006803 578 T--YSRVGTACVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 578 V--~NKiGT~~lAlaAk~~~VPV~V~aet~Kf 607 (630)
- -.....+.+=-+|-.||||++....+..|
T Consensus 80 ~~~~~~~dg~~iRR~A~~~~Ip~~T~~~ta~~ 111 (112)
T cd00532 80 RDRCTDEDGTALLRLARLYKIPVTTPNATAMF 111 (112)
T ss_pred cccccCCChHHHHHHHHHcCCCEEECHHHHhh
Confidence 2 12455678888888999999987666543
No 49
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=73.70 E-value=51 Score=34.00 Aligned_cols=58 Identities=9% Similarity=-0.012 Sum_probs=40.7
Q ss_pred CCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcce--eEecCCceecccch
Q 006803 527 SRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGAS--SVLSNGTTYSRVGT 584 (630)
Q Consensus 527 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd--aI~aNG~V~NKiGT 584 (630)
++-..+-..+++.+.+.|+++..|||+..+.+-+.+|.+|.... .....+.+-+.++.
T Consensus 185 sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~ 244 (278)
T PRK11557 185 SGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQATRSAAISSTHAQ 244 (278)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCCCCcccchHHHHHHHHH
Confidence 33334456677999999999999999999998888999997532 22233444455553
No 50
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=72.77 E-value=78 Score=33.28 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeec--ChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHH
Q 006803 461 KAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYG--SSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLR 538 (630)
Q Consensus 461 Ke~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g--~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~ 538 (630)
.+.+.+.....+++-...-+...-+.++++|.+-..|.-+| .|+.| +..|.+
T Consensus 97 ~~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~~A~rI~~~G~g~S~~v--------------------------A~~~~~ 150 (281)
T COG1737 97 LEKLLAANIAALERTLNLLDEEALERAVELLAKARRIYFFGLGSSGLV--------------------------ASDLAY 150 (281)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCeEEEEEechhHHH--------------------------HHHHHH
Confidence 33333333333433332334444556677777766666655 33322 234668
Q ss_pred HHHhCCCcEEEEcchhHHHH----hccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 539 RLLAKGLSCTYTHINAVSYI----MHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 539 eL~~~GI~vTlI~DsAv~~i----M~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.|...|++|.++.|....+. |..=|.||+ |.-.|. .-=+..++-.||.+|+|++.++..
T Consensus 151 ~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~----iS~sG~---t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 151 KLMRIGLNVVALSDTHGQLMQLALLTPGDVVIA----ISFSGY---TREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred HHHHcCCceeEecchHHHHHHHHhCCCCCEEEE----EeCCCC---cHHHHHHHHHHHHCCCcEEEEcCC
Confidence 88999999999999887762 224455543 223332 233567888999999999998766
No 51
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=72.56 E-value=27 Score=36.99 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=81.4
Q ss_pred HHHHHHHHhhccCCCEEEeecChHHHHHHHHHH---HHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH
Q 006803 481 KVIVRHAATKVRDGDVLLTYGSSCVVEMILLYA---HELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY 557 (630)
Q Consensus 481 ~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A---~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~ 557 (630)
+.-+.++.+....+-.|+=.|..+||...+... +.+|..-+|+++-+ +.+-+.++.+.||++.+..+.
T Consensus 29 r~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPt-----s~~s~q~~~~~gi~l~~~d~h---- 99 (261)
T KOG3075|consen 29 RLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPT-----SFRSAQLALEYGIPLSDLDSH---- 99 (261)
T ss_pred HHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEeccc-----chhhHHHHHhcCCccccCCCC----
Confidence 334455666555566788888888887666555 44566667777655 344567888999999887662
Q ss_pred HhccccEEEEcceeEecCCceecccchHH-HHHHHHhCCCcEEEecccccccc
Q 006803 558 IMHEVTRVFLGASSVLSNGTTYSRVGTAC-VAMVAHAFRVPVLICCEAYKFHE 609 (630)
Q Consensus 558 iM~~Vd~VivGAdaI~aNG~V~NKiGT~~-lAlaAk~~~VPV~V~aet~Kf~~ 609 (630)
..+|+-|=|||-|-.|..++---|-.. --..=--.-.-|||++...|++.
T Consensus 100 --p~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~ 150 (261)
T KOG3075|consen 100 --PVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSK 150 (261)
T ss_pred --ceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccch
Confidence 478999999999999998875555432 11222223456899999999984
No 52
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=71.97 E-value=88 Score=31.14 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=25.6
Q ss_pred ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 560 HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 560 ~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.+=|.+|+ |...|. .--+..++-.||.+|+|++.++..
T Consensus 110 ~~~Dv~I~----iS~SG~---t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 110 REGDVLLG----ISTSGN---SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34566654 444553 334556788899999999998764
No 53
>PLN02651 cysteine desulfurase
Probab=71.86 E-value=69 Score=34.18 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCCEEEeecChHHHHHHHHHHHH--cCCceEEEEcCC-CCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc-
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDS-RPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~- 560 (630)
.+.+++|-|.|..+..+|..+.. .++.-+|++.+. .|.+. .....|...|+.+.++.. ..+-..+.
T Consensus 60 ~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~--~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 60 PKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVL--DSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHH--HHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34677776666654444443322 123346777553 22221 112345577988888742 12333333
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+..+|++. +.-...|.+. .+ ..|+-+||.||++|+|
T Consensus 138 ~t~lv~v~-~~~n~tG~~~-~l--~~I~~~~~~~g~~~~v 173 (364)
T PLN02651 138 DTALVSVM-AVNNEIGVIQ-PV--EEIGELCREKKVLFHT 173 (364)
T ss_pred CcEEEEEE-CCCCCceecc-cH--HHHHHHHHHcCCEEEE
Confidence 33444432 2222334332 22 3588889999998876
No 54
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=71.55 E-value=42 Score=37.92 Aligned_cols=51 Identities=6% Similarity=0.046 Sum_probs=38.4
Q ss_pred cccEEEEcce-eEecCCceecccchHHHHHHHHhCCCcEEEeccccccccccc
Q 006803 561 EVTRVFLGAS-SVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQ 612 (630)
Q Consensus 561 ~Vd~VivGAd-aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~ 612 (630)
.+|..|.||+ +|..+|++++-.|.-..-+++ ..--=+|+++..-|+.+++.
T Consensus 181 ~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~~ 232 (432)
T TIGR00273 181 SADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTFD 232 (432)
T ss_pred cCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCHH
Confidence 6899999999 999999999988887755554 33333556678888876643
No 55
>PRK02947 hypothetical protein; Provisional
Probab=71.08 E-value=1.3e+02 Score=31.15 Aligned_cols=38 Identities=8% Similarity=-0.081 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhCCCcEEEEcchhH-----------HHHhccccEEEEc
Q 006803 531 HEGQALLRRLLAKGLSCTYTHINAV-----------SYIMHEVTRVFLG 568 (630)
Q Consensus 531 ~eG~~La~eL~~~GI~vTlI~DsAv-----------~~iM~~Vd~VivG 568 (630)
.+=..+++.+.+.|+++..||++.- +.+...+|.||.-
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~ 168 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLDN 168 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEEc
Confidence 3445567899999999999999863 5777778988853
No 56
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=70.23 E-value=11 Score=33.06 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE----cch---h----HHHHhc--cccEEEEcceeEe
Q 006803 507 EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT----HIN---A----VSYIMH--EVTRVFLGASSVL 573 (630)
Q Consensus 507 ~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI----~Ds---A----v~~iM~--~Vd~VivGAdaI~ 573 (630)
+.+.+...+.| |++|.+++ .++.|.++||+|+-+ ... . +..+|+ ++|+||.=-
T Consensus 3 ~~~a~~l~~lG--~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~---- 68 (95)
T PF02142_consen 3 VPLAKRLAELG--FEIYATEG--------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP---- 68 (95)
T ss_dssp HHHHHHHHHTT--SEEEEEHH--------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-----
T ss_pred HHHHHHHHHCC--CEEEEChH--------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC----
Confidence 34555555656 89998875 568899999994443 333 1 555555 699887532
Q ss_pred cCCceecc-cchHHHHHHHHhCCCcEE
Q 006803 574 SNGTTYSR-VGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 574 aNG~V~NK-iGT~~lAlaAk~~~VPV~ 599 (630)
++.--.. ...+.+--+|-.|+||++
T Consensus 69 -~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 69 -YPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp --THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred -CCCcccccCCcHHHHHHHHHcCCCCc
Confidence 2222222 367889999999999975
No 57
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=69.39 E-value=68 Score=33.39 Aligned_cols=47 Identities=15% Similarity=0.000 Sum_probs=36.9
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 522 VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 522 ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
+++.-++-..+-..+++.+.+.|+++..||++.-+.+-+.+|.+|.-
T Consensus 192 I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 192 LVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 34444554555566778889999999999999999988889999974
No 58
>PRK07582 cystathionine gamma-lyase; Validated
Probab=68.64 E-value=54 Score=35.59 Aligned_cols=96 Identities=17% Similarity=0.090 Sum_probs=55.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHHH-HHHhCCCcEEEEcchhHH-HHhccccEEEEcc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALLR-RLLAKGLSCTYTHINAVS-YIMHEVTRVFLGA 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La~-eL~~~GI~vTlI~DsAv~-~iM~~Vd~VivGA 569 (630)
..+.|++-+-+..+..+|..... ..-+|++.+ |.+.+. .+++ .|...|+.+.++...... .++.++++|++-
T Consensus 65 ~~~~v~~~sG~~Ai~~~l~all~--~Gd~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le- 139 (366)
T PRK07582 65 GAEALVFPSGMAAITAVLRALLR--PGDTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAE- 139 (366)
T ss_pred CCCEEEECCHHHHHHHHHHHhcC--CCCEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEE-
Confidence 34667765555544444444333 334677653 555444 3443 467789999998654222 445566666653
Q ss_pred eeEecCCceecccc----hHHHHHHHHhCCCcEEE
Q 006803 570 SSVLSNGTTYSRVG----TACVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~aNG~V~NKiG----T~~lAlaAk~~~VPV~V 600 (630)
. .-|..| -..|+-+|+.+++.++|
T Consensus 140 -~------p~NPtg~v~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 140 -T------PSNPGLDVCDLAALAAAAHAAGALLVV 167 (366)
T ss_pred -C------CCCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 1 223333 35678888889987766
No 59
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=68.54 E-value=18 Score=42.22 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=60.9
Q ss_pred cCCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-----CC----CcEEEE-cc----hhHH
Q 006803 492 RDGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-----KG----LSCTYT-HI----NAVS 556 (630)
Q Consensus 492 ~dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-----~G----I~vTlI-~D----sAv~ 556 (630)
.+|.+||..|-++-+ ..+++.+.+.| ++|+++.-+ ......+..+|.+ .| ..++++ .| ..+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~Rn-~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGVRS-AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEeCC-HHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 468899999887755 45555566656 466655332 2223334444433 12 123322 22 3444
Q ss_pred HHhccccEEEEcceeEecC------CceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 557 YIMHEVTRVFLGASSVLSN------GTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 557 ~iM~~Vd~VivGAdaI~aN------G~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
..+..+|.||..+-....+ -.-+|-.|+..+.-+|+.+++.-||+..+
T Consensus 155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 5567788887654221100 01136678888888888888876665544
No 60
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=68.48 E-value=69 Score=33.67 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=49.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc--cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH--EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~ 564 (630)
..++..+++...+.++..+.- +..-+|++.+. ..-+..+...+...|..++++.. ..+...+. +..+
T Consensus 51 ~~~~~~~~~t~al~~~~~~~~-~~g~~vl~~~~--~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~ 127 (356)
T cd06451 51 LTFLLSGSGTGAMEAALSNLL-EPGDKVLVGVN--GVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKA 127 (356)
T ss_pred CEEEEecCcHHHHHHHHHHhC-CCCCEEEEecC--CchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCE
Confidence 445444443333333333331 23345666542 22232233445567887777631 23333332 4555
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
|++ .+.-...|.+.. --.++-+|+++++++++=
T Consensus 128 v~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D 160 (356)
T cd06451 128 VTL-THNETSTGVLNP---LEGIGALAKKHDALLIVD 160 (356)
T ss_pred EEE-eccCCCcccccC---HHHHHHHHHhcCCEEEEe
Confidence 555 333334554433 334777889999988873
No 61
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=68.41 E-value=56 Score=31.49 Aligned_cols=37 Identities=11% Similarity=-0.058 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 533 GQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 533 G~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
=..+++.+.+.|+++..||++.-+.+-+.+|.+|.-.
T Consensus 88 ~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 88 LVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 3456688999999999999999999999999988643
No 62
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=68.16 E-value=60 Score=36.38 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=49.2
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH-HHHH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG-QALL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~~La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
..|+|-+-+..+..+|......| -+|++... .+.| ..+. +.|.+.|+.++++.. ..+-..+. +..+|++-
T Consensus 81 ~av~~sSGt~Al~~al~~ll~~G--d~Vi~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e 156 (433)
T PRK08134 81 GAIATASGQAALHLAIATLMGAG--SHIVASSA--LYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGE 156 (433)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCC--CEEEEeCC--ccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 34555444444444444333333 35666543 2223 2333 557778888888752 23444444 34344332
Q ss_pred ceeEecCCceecccc----hHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVG----TACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiG----T~~lAlaAk~~~VPV~V 600 (630)
.+ -|..| --.|+-+|+.||++|+|
T Consensus 157 --~~------~np~g~v~Di~~I~~la~~~gi~liv 184 (433)
T PRK08134 157 --TL------GNPGLEVLDIPTVAAIAHEAGVPLLV 184 (433)
T ss_pred --CC------CcccCcccCHHHHHHHHHHcCCEEEE
Confidence 22 23332 24578889999999887
No 63
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=67.84 E-value=59 Score=34.45 Aligned_cols=93 Identities=19% Similarity=0.191 Sum_probs=53.6
Q ss_pred CCEEEeecChHH-----HHHHHHHHH----HcCCceEEEEcCCCCCchHHHHHHHHHhC-CCcEEEEcchhHHHHhcccc
Q 006803 494 GDVLLTYGSSCV-----VEMILLYAH----ELGKQFRVVVVDSRPKHEGQALLRRLLAK-GLSCTYTHINAVSYIMHEVT 563 (630)
Q Consensus 494 gdvILT~g~S~t-----V~~vL~~A~----e~gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTlI~DsAv~~iM~~Vd 563 (630)
..+|+.++.|.- ....+.+|. +...+++++++-..|.. -..+...+.+. |+.+.++. ..+..+|..+|
T Consensus 186 ~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aD 263 (380)
T PRK00025 186 ARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKR-REQIEEALAEYAGLEVTLLD-GQKREAMAAAD 263 (380)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhh-HHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCC
Confidence 346677765541 122333322 23345666655322221 22333445556 78877665 46788889999
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
.+|+-+ |+..+ =|-.+|+|++++-.
T Consensus 264 l~v~~s-------------G~~~l--Ea~a~G~PvI~~~~ 288 (380)
T PRK00025 264 AALAAS-------------GTVTL--ELALLKVPMVVGYK 288 (380)
T ss_pred EEEECc-------------cHHHH--HHHHhCCCEEEEEc
Confidence 998842 66444 45678999998844
No 64
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=67.78 E-value=29 Score=30.57 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=47.8
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCcEEEE------cchh--HHHHhccccEEEEcceeEecCCceecccchHHHHHHHHh
Q 006803 522 VVVVDSRPKHEGQALLRRLLAKGLSCTYT------HINA--VSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA 593 (630)
Q Consensus 522 ViV~ESRP~~eG~~La~eL~~~GI~vTlI------~DsA--v~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~ 593 (630)
|.|+-.+..+++ .+...|.+.|...... .... +-..+.++|+||+=.|.|- -.-+..+--.||.
T Consensus 2 vliVGG~~~~~~-~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs-------H~~~~~vk~~akk 73 (97)
T PF10087_consen 2 VLIVGGREDRER-RYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS-------HNAMWKVKKAAKK 73 (97)
T ss_pred EEEEcCCcccHH-HHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC-------hHHHHHHHHHHHH
Confidence 334444333332 3456677788887777 4444 5566667899988776554 3346667788899
Q ss_pred CCCcEEEe
Q 006803 594 FRVPVLIC 601 (630)
Q Consensus 594 ~~VPV~V~ 601 (630)
+++||+.+
T Consensus 74 ~~ip~~~~ 81 (97)
T PF10087_consen 74 YGIPIIYS 81 (97)
T ss_pred cCCcEEEE
Confidence 99999986
No 65
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=67.65 E-value=45 Score=33.65 Aligned_cols=94 Identities=22% Similarity=0.207 Sum_probs=61.7
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|..||..|-..+...-++...+.|-.++|+-.+ +. .-..+|.+.| .++++.-.--...+..+++||+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~--~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~a---- 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE--LE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAA---- 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC--CC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEEC----
Confidence 4678999999998888888888878765555333 32 1234566666 67777643223345566666543
Q ss_pred ecCCce-ecccchHHHHHHHHhCCCcEEEecc
Q 006803 573 LSNGTT-YSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 573 ~aNG~V-~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
-|+- +| ..++..|+..+|||.++-+
T Consensus 77 --t~d~~ln----~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 77 --TDDEELN----RRVAHAARARGVPVNVVDD 102 (205)
T ss_pred --CCCHHHH----HHHHHHHHHcCCEEEECCC
Confidence 3332 33 4788899999999998754
No 66
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.52 E-value=55 Score=35.93 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=39.3
Q ss_pred HhhccCCCEEEeecChHHHHHHHHHHHHc-CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006803 488 ATKVRDGDVLLTYGSSCVVEMILLYAHEL-GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 488 ~~~I~dgdvILT~g~S~tV~~vL~~A~e~-gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 551 (630)
...|+.||+|+..|....+..+....... ...-+++|+-. ..-|+.+++.|.+.|+++++|.
T Consensus 199 ~~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 199 DTVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred CcEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEE
Confidence 34556678887777777666555443221 12345666666 4557777788888888877773
No 67
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=66.60 E-value=86 Score=27.49 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=36.0
Q ss_pred HHHhCCCcEEEEcc------hhHHHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 539 RLLAKGLSCTYTHI------NAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 539 eL~~~GI~vTlI~D------sAv~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+.+.|++++.+.. .++..+.. ++|+|++|...=...+ ---.|+.... +.++-++||+|+
T Consensus 64 ~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~--~~~lGs~~~~-v~~~~~~pvlvv 131 (132)
T cd01988 64 IAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLR--DRLFGGVIDQ-VLESAPCDVAVV 131 (132)
T ss_pred HhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCcc--ceecCchHHH-HHhcCCCCEEEe
Confidence 34557988876653 12333333 5999999998533221 1224664444 457778999986
No 68
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=65.95 E-value=57 Score=36.67 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=48.1
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-H-HHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-A-LLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~-La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivG 568 (630)
..|++-+....+..+|......| -+|++... .+.|. . +...|...||.++++.| ..+...+..=+++|+
T Consensus 86 ~~v~fsSG~~Ai~~al~~ll~~G--d~VI~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~- 160 (437)
T PRK05613 86 HAVAFASGQAAETAAILNLAGAG--DHIVTSPR--LYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFF- 160 (437)
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEECCC--ccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEE-
Confidence 34554444444444443333333 35666532 23232 2 23556777888888852 223334432233333
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+.+..+-..+.. --.|+-+|+.+|++|+|
T Consensus 161 ~e~~~Np~~~v~d--i~~I~~la~~~gi~liv 190 (437)
T PRK05613 161 GETFANPQADVLD--IPAVAEVAHRNQVPLIV 190 (437)
T ss_pred EECCCCCCCcccC--HHHHHHHHHHcCCeEEE
Confidence 2333222112223 34577788889988876
No 69
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=65.84 E-value=1.3e+02 Score=32.76 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=51.7
Q ss_pred CCCEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcch--------hHHHHhc-
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHIN--------AVSYIMH- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~- 560 (630)
.+.+++|.|.+..+..+|..... .++.-+|++.+ +.+.....+ ..|...|+.+.++... .+-..+.
T Consensus 64 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 141 (402)
T TIGR02006 64 SREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD 141 (402)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34577776655555544443321 12334566664 334333333 4456679998888532 2223332
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+...|++ .+.=...| ++..+ ..|+-+|+.||+.|+|
T Consensus 142 ~~~lv~v-~~~~n~tG-~~~~~--~~I~~l~~~~g~~liv 177 (402)
T TIGR02006 142 DTILVSI-MHVNNEIG-VIQDI--AAIGEICRERKVFFHV 177 (402)
T ss_pred CCEEEEE-ECCCcCce-ecccH--HHHHHHHHHcCCEEEE
Confidence 2333322 22212223 33332 3588889999998876
No 70
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=65.57 E-value=74 Score=28.98 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=36.3
Q ss_pred HHhCCCcEE--EEcc-hhHHHHhc-----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 540 LLAKGLSCT--YTHI-NAVSYIMH-----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 540 L~~~GI~vT--lI~D-sAv~~iM~-----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+...|+++. .+.. ...--++. ++|++|+|.+. + ...++| ....-+.++-++||+|+
T Consensus 74 ~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv 137 (144)
T PRK15118 74 STNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIV 137 (144)
T ss_pred HHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEe
Confidence 345688752 3222 22223333 69999999985 2 344578 55667788889999997
No 71
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=65.22 E-value=1.2e+02 Score=31.97 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcC--C-ceEEEEcCC-CCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhcc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELG--K-QFRVVVVDS-RPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMHE 561 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~g--k-~f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~ 561 (630)
.++++|-|.+..+..+|......+ + +-+|++.+. .|.+.. ....+...|+.+.++... .+-..+..
T Consensus 60 ~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~--~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (353)
T TIGR03235 60 EEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLE--PIRALERNGFTVTYLPVDESGRIDVDELADAIRP 137 (353)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHH--HHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCC
Confidence 457777665555555554433211 1 145665543 332211 113455679988887531 22222322
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
-.++++-.+.-...|.+.. --.|+-+|+.|+++|+|
T Consensus 138 ~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~iv 173 (353)
T TIGR03235 138 DTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHV 173 (353)
T ss_pred CCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEE
Confidence 1233322222223443332 25588889999998887
No 72
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=65.20 E-value=72 Score=30.84 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEE
Q 006803 533 GQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL 567 (630)
Q Consensus 533 G~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 567 (630)
=..+++.+.+.|+++..||++.-+.+-+.+|.+|.
T Consensus 91 ~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~ 125 (179)
T cd05005 91 VVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVV 125 (179)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 34556888999999999999988888888998875
No 73
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=64.93 E-value=56 Score=34.45 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=58.7
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-hhHHHHhccccEEEEccee
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-NAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sAv~~iM~~Vd~VivGAda 571 (630)
...+++|.|.+..+.. +..+...| +|++. .|.+.+... .+...|+.+..+.| ..+-..+.+.+.|++ ..-
T Consensus 64 ~~~i~~t~G~~~~i~~-~~~~l~~g---~vl~~--~p~y~~~~~--~~~~~g~~~~~~~d~~~l~~~~~~~~~v~i-~~p 134 (330)
T TIGR01140 64 AASVLPVNGAQEAIYL-LPRLLAPG---RVLVL--APTYSEYAR--AWRAAGHEVVELPDLDRLPAALEELDVLVL-CNP 134 (330)
T ss_pred hhhEEECCCHHHHHHH-HHHHhCCC---eEEEe--CCCcHHHHH--HHHHcCCEEEEeCCHHHHHhhcccCCEEEE-eCC
Confidence 4567888776665544 44444333 45554 577766544 35678999988874 233334456666655 222
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
=-.-|.++..-.-..++-+|+.|++++++
T Consensus 135 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 135 NNPTGRLIPPETLLALAARLRARGGWLVV 163 (330)
T ss_pred CCCCCCCCCHHHHHHHHHHhHhcCCEEEE
Confidence 22334555444445567788889997775
No 74
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=64.87 E-value=85 Score=27.63 Aligned_cols=101 Identities=19% Similarity=0.146 Sum_probs=52.1
Q ss_pred EeecChHHHHHHH----HHHHHcCCceE-EEEcCCCC---CchHHHHH----HHHHhCCCcEEEEcchhH-HHHhc----
Q 006803 498 LTYGSSCVVEMIL----LYAHELGKQFR-VVVVDSRP---KHEGQALL----RRLLAKGLSCTYTHINAV-SYIMH---- 560 (630)
Q Consensus 498 LT~g~S~tV~~vL----~~A~e~gk~f~-ViV~ESRP---~~eG~~La----~eL~~~GI~vTlI~DsAv-~~iM~---- 560 (630)
+-+..|..-...| ..|...+..++ |+|.+... ..++.+.. ..+.+.|+++.++..... .-++.
T Consensus 4 v~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~ 83 (124)
T cd01987 4 VCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDVAEAIVEFARE 83 (124)
T ss_pred EEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHH
Confidence 3344444333333 33444455666 44444332 12333332 445567888766655333 22332
Q ss_pred -cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEe
Q 006803 561 -EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ 601 (630)
++|++++|++.= |.+-. -.|+..--++-+.-++||+|+
T Consensus 84 ~~~dllviG~~~~---~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 84 HNVTQIVVGKSRR---SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cCCCEEEeCCCCC---chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 589999999853 22222 344444334433358999886
No 75
>PRK05839 hypothetical protein; Provisional
Probab=64.47 E-value=78 Score=34.09 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=54.6
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh-HHHH-------hccc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA-VSYI-------MHEV 562 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-v~~i-------M~~V 562 (630)
+...++++|.|.+..+..++......+.. ..++++ .|.+.+..... ...|+.+..+.... -++. ..++
T Consensus 81 ~~~~~I~it~G~~~al~~~~~~~~~~~~g-d~vlv~-~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~ 156 (374)
T PRK05839 81 LKENELIPTFGTREVLFNFPQFVLFDKQN-PTIAYP-NPFYQIYEGAA--IASRAKVLLMPLTKENDFTPSLNEKELQEV 156 (374)
T ss_pred CCcceEEEecCcHHHHHHHHHHHhcCCCC-CEEEEC-CCCchhhHHHH--HhcCCEEEEeecccccCCcCCcchhhhccc
Confidence 45567888888887655444432211112 344455 37776665543 45788887775431 1121 1234
Q ss_pred cEEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
.+|++ | .--|++|+ ..++-.|+.||+.+++
T Consensus 157 k~v~i-------~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 157 DLVIL-------N-SPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cEEEE-------e-CCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 44433 3 34466665 4566678899998875
No 76
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=64.32 E-value=31 Score=31.18 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=54.5
Q ss_pred EEEeecChH--HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---------h-hHHHHhc-cc
Q 006803 496 VLLTYGSSC--VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---------N-AVSYIMH-EV 562 (630)
Q Consensus 496 vILT~g~S~--tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------s-Av~~iM~-~V 562 (630)
++++++... -+..++...++ ..|++|.++. .++.|.+.||+|+.+.. . ..-.+.. ++
T Consensus 3 vlisv~~~dk~~~~~~a~~l~~--~G~~i~aT~g--------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 3 ILISIGSYSKPELLPTAQKLSK--LGYKLYATEG--------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEEecCcccchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 345555331 23444555444 4588887764 56888899999988732 2 2333333 79
Q ss_pred cEEEE----cceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 563 TRVFL----GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 563 d~Viv----GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
|+||- |.+....+| |.+=-.|-.++||++-..+
T Consensus 73 dlVIn~~~~~~~~~~~~~--------~~iRr~Av~~~ip~iT~~~ 109 (116)
T cd01423 73 DLVINLPSNRGKRVLDND--------YVMRRAADDFAVPLITNPK 109 (116)
T ss_pred eEEEECCCCCCCccccCc--------EeeehhhHhhCCcccccHH
Confidence 99987 444334444 4455678889999974433
No 77
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=63.98 E-value=1.2e+02 Score=32.25 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHH-cCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcch--------hHHHHhc-c
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHE-LGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHIN--------AVSYIMH-E 561 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e-~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~Ds--------Av~~iM~-~ 561 (630)
...+++|.|.+..+..+|..+.. ....-+|++.+. .+.+... ...+...|+.+.++... .+-..+. +
T Consensus 59 ~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~--~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~ 136 (379)
T TIGR03402 59 PDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAV--EHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDD 136 (379)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEccc--ccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCC
Confidence 34577887776666655554422 111224444332 2223222 24566679998888521 2223332 3
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..+|++ ...-...|.+ ..+ -.|+-+|+.||++++|
T Consensus 137 ~~lv~i-~~~~n~tG~~-~~~--~~I~~l~~~~g~~viv 171 (379)
T TIGR03402 137 TALVSV-MWANNETGTI-FPI--EEIGEIAKERGALFHT 171 (379)
T ss_pred cEEEEE-EcccCCeeec-ccH--HHHHHHHHHcCCEEEE
Confidence 333333 2222233333 333 3588899999998876
No 78
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=63.81 E-value=86 Score=33.30 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=68.1
Q ss_pred HHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC------CCch--------H----HHHHHHHHhC
Q 006803 482 VIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR------PKHE--------G----QALLRRLLAK 543 (630)
Q Consensus 482 ~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR------P~~e--------G----~~La~eL~~~ 543 (630)
.+++.+.++|. +..|+.+|..++=-.+...+...|.. +++++|-. -..| | ..|..+|.+.
T Consensus 19 L~G~e~~~kL~-~s~VlVvG~GGVGs~vae~Lar~GVg-~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I 96 (268)
T PRK15116 19 LYGEKALQLFA-DAHICVVGIGGVGSWAAEALARTGIG-AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI 96 (268)
T ss_pred HhCHHHHHHhc-CCCEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH
Confidence 46777777776 46788889888766666666666732 34444322 1111 1 1334666665
Q ss_pred C--CcEEEEcc----hhHHHHh-ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc-ccccc
Q 006803 544 G--LSCTYTHI----NAVSYIM-HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA-YKFHE 609 (630)
Q Consensus 544 G--I~vTlI~D----sAv~~iM-~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet-~Kf~~ 609 (630)
. +.++.+.+ ..+..++ .+.|.||...|.+. .+ ..|.-.|+.+++|||.+... -|+++
T Consensus 97 NP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~------~k---~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 97 NPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVR------PK---AALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred CCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHH------HH---HHHHHHHHHcCCCEEEECCcccCCCC
Confidence 4 33443322 1223333 46888877766543 22 34667789999999988665 34444
No 79
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=62.82 E-value=59 Score=36.39 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEE
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFL 567 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~Viv 567 (630)
.+.|+|-+-+..+..+|......|. +|++.+ |.+.|.. +. ..+...|+.+.++.. ..+-..+. ++.+|++
T Consensus 80 ~~al~~~sG~~Ai~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l 155 (431)
T PRK08248 80 IGALAVSSGQAAITYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFA 155 (431)
T ss_pred CcEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEE
Confidence 3667777777666666665544443 566654 4554433 33 457778999988853 23333443 4555554
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
- .---..|.++. -..|+-+|+.++++|+|=
T Consensus 156 ~-sp~NPtG~v~d---i~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 156 E-TIGNPKGDVLD---IEAVAAIAHEHGIPLIVD 185 (431)
T ss_pred E-CCCCCCCcccC---HHHHHHHHHHcCCEEEEe
Confidence 2 11112244443 235777889999988763
No 80
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=62.75 E-value=22 Score=31.49 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=51.0
Q ss_pred EEEeecChHHHHHHHHHHHHc-CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--h-hHHHHhc------ccc-E
Q 006803 496 VLLTYGSSCVVEMILLYAHEL-GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--N-AVSYIMH------EVT-R 564 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~-gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--s-Av~~iM~------~Vd-~ 564 (630)
+|-||.....+..+|....++ ...++|||++..+.-+-..+++++.+.+..+++|.- + ..+..+. .-+ .
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i 82 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGEYI 82 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SSEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccceeEE
Confidence 456677767788888877665 567899999887766667777777777778888763 2 2222222 233 3
Q ss_pred EEEcceeEecCC
Q 006803 565 VFLGASSVLSNG 576 (630)
Q Consensus 565 VivGAdaI~aNG 576 (630)
+++-+|.++..+
T Consensus 83 ~~ld~D~~~~~~ 94 (169)
T PF00535_consen 83 LFLDDDDIISPD 94 (169)
T ss_dssp EEEETTEEE-TT
T ss_pred EEeCCCceEcHH
Confidence 445666666665
No 81
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=62.66 E-value=71 Score=33.17 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=50.8
Q ss_pred HhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHHhcc---
Q 006803 488 ATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYIMHE--- 561 (630)
Q Consensus 488 ~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~--- 561 (630)
++++...+.|++.+.+.....+|..+...| -+|++ ++|.+...... +...|+.+.++.. ..+-.++.+
T Consensus 56 a~~~~~~~~iv~~sg~~a~~~~~~~~~~~g--d~Vl~--~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~le~~i~~~~~ 129 (349)
T cd06454 56 AEFHGKEAALVFSSGYAANDGVLSTLAGKG--DLIIS--DSLNHASIIDG--IRLSGAKKRIFKHNDMEDLEKLLREARR 129 (349)
T ss_pred HHHhCCCCEEEeccHHHHHHHHHHHhcCCC--CEEEE--ehhhhHHHHHH--HHHcCCceEEecCCCHHHHHHHHHHhhc
Confidence 334433355665444444343443333333 34555 34555443333 3446888776632 233333432
Q ss_pred --ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 562 --VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 562 --Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
-.++++ ...+....++...+ -.|+-+|++|+++|+|=
T Consensus 130 ~~~~~~v~-~~~~~~~tG~~~~~--~~i~~~~~~~~~~livD 168 (349)
T cd06454 130 PYGKKLIV-TEGVYSMDGDIAPL--PELVDLAKKYGAILFVD 168 (349)
T ss_pred cCCCeEEE-EeccccCCCCccCH--HHHHHHHHHcCCEEEEE
Confidence 123333 22333222334443 45778899999988873
No 82
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=62.46 E-value=76 Score=34.64 Aligned_cols=96 Identities=16% Similarity=0.285 Sum_probs=53.8
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----------hHHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----------AVSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 560 (630)
+....+++|.|.+..+..++......| -+|++.+ |.+.+... .+...|+.+.++... .+-..+.
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~~--P~y~~~~~--~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTALCDEG--DNILVPA--PGFPHYET--VCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHhcCCC--CEEEEcc--CCcccHHH--HHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 445678899888887666665443333 2444443 66655433 355578887777431 1222222
Q ss_pred -cccEEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
++.+|++ + | --|..|+ ..|+-+|++|++.+++
T Consensus 176 ~~~~~i~~-~-----~--p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 176 DRTKALIM-T-----N--PSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cCceEEEE-e-----C--CCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 3444433 1 2 2366664 4556678889987765
No 83
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=62.40 E-value=36 Score=34.97 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=59.3
Q ss_pred EEEeecC-hHHHHHHHHHHHHcCCceEEEEcCCCCCch---HHHHHHHHHhCCCcEE-EEcchhHHHHhccccEEEEcce
Q 006803 496 VLLTYGS-SCVVEMILLYAHELGKQFRVVVVDSRPKHE---GQALLRRLLAKGLSCT-YTHINAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 496 vILT~g~-S~tV~~vL~~A~e~gk~f~ViV~ESRP~~e---G~~La~eL~~~GI~vT-lI~DsAv~~iM~~Vd~VivGAd 570 (630)
.|..++. ....+.+|..+.+.....+++|= ..|... ...+..++.. ...+. +..+..+..+|..+|.|+.-
T Consensus 131 ~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK-~HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~Vvti-- 206 (269)
T PF05159_consen 131 QIRYHSPSQADFLDMLESFAKENPDAKLVVK-PHPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDAVVTI-- 206 (269)
T ss_pred chhccCCcHhHHHHHHHHHHHHCCCCEEEEE-ECchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCEEEEE--
Confidence 3444444 23567888887776666676554 467422 2233444433 33344 45567889999999999653
Q ss_pred eEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 571 aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
| .++++=|-.+|+||+|+..++
T Consensus 207 ----n---------StvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 207 ----N---------STVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred ----C---------CHHHHHHHHcCCceEEecCcc
Confidence 3 246788888999999997654
No 84
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=62.08 E-value=1.2e+02 Score=33.40 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=51.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
++|+|-+-...+..+|......|. +|++. ++.+.+. .+. ..+...|+.++++.- ..+...+. +..+|++-
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie 153 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLE 153 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 466665555455555554444443 56663 3444333 333 456778999988843 23333443 34444431
Q ss_pred ceeEecCCceecccch----HHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGT----ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT----~~lAlaAk~~~VPV~V 600 (630)
. ..|..|. -.|+-+|+.|+++++|
T Consensus 154 --~------p~NptG~v~dl~~I~~la~~~gi~liv 181 (390)
T PRK08133 154 --T------PSNPLTELADIAALAEIAHAAGALLVV 181 (390)
T ss_pred --C------CCCCCCCcCCHHHHHHHHHHcCCEEEE
Confidence 1 2244443 4677788999998876
No 85
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=62.04 E-value=14 Score=35.56 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=64.4
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcce
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd 570 (630)
+..|+.|..+||=.- ++.... .+..+|+|+|=.|.+.|.. ..++ .+....++++++|.||+-+.
T Consensus 8 ~~~~~~V~~VG~f~P---~~~~l~--~~~~~v~v~d~~~~~~~~~------~~~~-----~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQP---LVEKLK--ERGAEVRVFDLNPDNIGEE------PGDV-----PDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTTSEEEEES--HC---CHHHHC--CCCSEEEEEESSGGG--SS------CT-E-----EGGGHHHHGGG-SEEEEECH
T ss_pred hcCCCEEEEEcCcHH---HHHHHh--cCCCCEEEEECCCCCCCCC------CCcC-----CHHHHHHHHccCCEEEEEee
Confidence 567899999997322 233322 3678999999999764431 1111 88899999999999999776
Q ss_pred eEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCC
Q 006803 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLD 614 (630)
Q Consensus 571 aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~d 614 (630)
++. || |+.--|.....+.++++..+|.-+++.+..+
T Consensus 72 Tlv-N~-------Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~ 107 (147)
T PF04016_consen 72 TLV-NG-------TIDDILELARNAREVILYGPSAPLHPEALFD 107 (147)
T ss_dssp HCC-TT-------THHHHHHHTTTSSEEEEESCCGGS-GGGGCC
T ss_pred eee-cC-------CHHHHHHhCccCCeEEEEecCchhhHHHHHh
Confidence 665 44 3332222223589999999999998866544
No 86
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.77 E-value=68 Score=35.85 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=54.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEe
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
+..|+.+|...+=..+.+.+.+.| +.|++.|.++...=..++.+|.+.||.+.+-.+. ...+...|.||+....-.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Spgi~~ 89 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTPSMRI 89 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECCCCCC
Confidence 456777665554334444444555 6899999876432223345688899877654432 233467898888643222
Q ss_pred cCCceecccchHHHHHHHHhCCCcEE
Q 006803 574 SNGTTYSRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 574 aNG~V~NKiGT~~lAlaAk~~~VPV~ 599 (630)
+ ...-..|++.+||++
T Consensus 90 -~---------~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 90 -D---------SPELVKAKEEGAYIT 105 (458)
T ss_pred -C---------chHHHHHHHcCCcEE
Confidence 2 345566677777776
No 87
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=60.74 E-value=2.7e+02 Score=31.20 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=58.7
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHHhccccEEEEcc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivGA 569 (630)
.|..++.++....+..+.....+.|-...++++++.+..--..|...+...+.++.++.+ ..+..++.+. .+
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~-----~~ 373 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKEL-----KI 373 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhc-----CC
Confidence 577889999888777777777777876655666665443333343445555666666554 3344444432 23
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
|-|+ |+..-..+|+..+||++.++
T Consensus 374 dlii---------G~s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 374 DVLI---------GNSYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred CEEE---------ECchhHHHHHHcCCCEEEec
Confidence 3333 22234578899999998764
No 88
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=60.50 E-value=1.2e+02 Score=32.92 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=31.9
Q ss_pred hhHHHHhccccEEEEcce----eEecCCceeccc----chHHHHHHHHhCCCcEEEec
Q 006803 553 NAVSYIMHEVTRVFLGAS----SVLSNGTTYSRV----GTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 553 sAv~~iM~~Vd~VivGAd----aI~aNG~V~NKi----GT~~lAlaAk~~~VPV~V~a 602 (630)
.++-.+|..=-.+|+..+ .+..||.+.|-- +=...+++|.+.+.-.++.+
T Consensus 172 ~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~Liil 229 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVIL 229 (308)
T ss_pred HHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEE
Confidence 455666666556677666 455566555432 25677889999998766653
No 89
>PRK09932 glycerate kinase II; Provisional
Probab=60.37 E-value=11 Score=41.79 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccccccc
Q 006803 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFH 608 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~ 608 (630)
.|..+.-++.. +-..|+.+|+||.|=-++-.- ...--..+.+|-+|+.|+||||++|.+...+
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADlVITGEG~~D~Q--t~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~~ 329 (381)
T PRK09932 267 PGIEIVLNAVN------------LEQAVQGAALVITGEGRIDSQ--TAGGKAPLGVASVAKQFNVPVIGIAGVLGDG 329 (381)
T ss_pred cHHHHHHHhcC------------hHHHhccCCEEEECCCccccc--ccCCccHHHHHHHHHHcCCCEEEEecccCCC
Confidence 57777755543 235678899999996655322 3333446778889999999999999987543
No 90
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=59.75 E-value=8.9 Score=43.75 Aligned_cols=29 Identities=59% Similarity=0.766 Sum_probs=24.8
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhccCCCC
Q 006803 185 AKAKTTKAERRAMQEAQRAAKAATKGKGG 213 (630)
Q Consensus 185 ~~~k~sk~eRr~l~~~q~~ak~~~k~~~~ 213 (630)
.+.+.|++||+++||.++++|.|+|.++.
T Consensus 116 ~~~~~t~a~~~a~~Ea~~a~K~a~kg~~~ 144 (556)
T KOG1467|consen 116 GLAVPTRAERKAIQEAKRAAKTAEKGEGA 144 (556)
T ss_pred ccccccHHHHhhHHHHHHHHHHhhhcccc
Confidence 45567899999999999999999987654
No 91
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=59.49 E-value=1.2e+02 Score=33.10 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=49.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcch---hHHHHhccccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHIN---AVSYIMHEVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~~Vd~VivGA 569 (630)
+.|++-+.+..+..++ .....| -+|++.+ +.+.|.. +. ..+...|+.++++... .+-..+..=+++|+-.
T Consensus 64 ~~l~~~sG~~al~~~l-~ll~~G--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le 138 (378)
T TIGR01329 64 RAFAFSSGMAALDVIT-RLLNNG--DEIIAGD--DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLE 138 (378)
T ss_pred cEEEECCHHHHHHHHH-HHhCCC--CEEEEcC--CCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 4555544443333333 344333 3666653 4555543 33 3456689999888632 2333333222333322
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
..--..|.+.. --.++-+|+.||++++|=
T Consensus 139 ~psnptg~v~d---l~~I~~la~~~g~~vivD 167 (378)
T TIGR01329 139 SPTNPLQKIVD---IRKISEMAHAQNALVVVD 167 (378)
T ss_pred CCCCCCCeeec---HHHHHHHHHHcCCEEEEE
Confidence 11122333332 345777889999888873
No 92
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=58.96 E-value=1e+02 Score=33.83 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=52.8
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHHHHHHhCCCcEEEEc-c-hhHHHHhc--cccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALLRRLLAKGLSCTYTH-I-NAVSYIMH--EVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La~eL~~~GI~vTlI~-D-sAv~~iM~--~Vd~VivGA 569 (630)
+.|+|-+-+..+..+|......|. +|++. .|.+.+. .+...+...|+.++++. | ..+...+. +..+|++
T Consensus 70 ~~l~~~sG~~Ai~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i-- 143 (385)
T PRK08574 70 DALAFNSGMAAISTLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI-- 143 (385)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE--
Confidence 566665544444555554444443 45554 3555553 33445567798887753 2 34444443 3444443
Q ss_pred eeEe-cCCceecccchHHHHHHHHhCCCcEEE
Q 006803 570 SSVL-SNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~-aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+.+. .+|.++. --.|+-+|+.|+++++|
T Consensus 144 e~p~NPtG~v~d---l~~I~~la~~~gi~liv 172 (385)
T PRK08574 144 ETMTNPTLKVID---VPEVAKAAKELGAILVV 172 (385)
T ss_pred ECCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 3222 2344444 23677789999998886
No 93
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=58.88 E-value=1.6e+02 Score=32.53 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=53.3
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH-HHHH-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG-QALL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
+.|++-+-+..+..+|......| -+|++.+. .+.+ ..+. ..+...|+.++++... .+...+. +...|++
T Consensus 87 ~al~~~sG~~Ai~~~l~all~~G--d~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~- 161 (403)
T PRK07810 87 ACFATASGMSAVFTALGALLGAG--DRLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFF- 161 (403)
T ss_pred cEEEECChHHHHHHHHHHHhCCC--CEEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEE-
Confidence 56666666655555555443333 46777653 2322 2333 4567789999988543 2333333 3444433
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..-.-..|.++. --.|+-+|++|+++|+|
T Consensus 162 esp~Nptg~v~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 162 ETPSNPMQSLVD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 111112333332 34577889999998876
No 94
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=58.66 E-value=1.2e+02 Score=26.02 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=25.6
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+|+||+|++.. +.+-...-+...--++++..+||+|+
T Consensus 102 ~~dliv~G~~~~---~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 102 NADLIVMGSRGR---SGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TCSEEEEESSST---TSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred cceeEEEeccCC---CCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 699999999882 22222233444555667788999986
No 95
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=58.54 E-value=64 Score=34.36 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=53.7
Q ss_pred ccCCCEEEeecChHHHHHHHHHH-HHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYA-HELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A-~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
+...++++|.|.+..+..++... ...| =+|++ + .|.+.+...+.+ ..|+.+..+.+ ...+.. -..
T Consensus 84 ~~~~~I~it~G~~~~i~~~~~~l~~~~g--d~Vl~-~-~p~y~~~~~~~~--~~g~~~~~~~~--~~~l~~------~~~ 149 (364)
T PRK07865 84 LDPAAVLPVIGSKELVAWLPTLLGLGPG--DVVVI-P-ELAYPTYEVGAR--LAGATVVRADS--LTELGP------QRP 149 (364)
T ss_pred CCcccEEEccChHHHHHHHHHHHcCCCC--CEEEE-C-CCCcccHHHHHH--hcCCEEEecCC--hhhCCc------ccc
Confidence 44567899999988765544433 2333 24444 4 377766655433 35777766643 111111 122
Q ss_pred eeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 570 SSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
..|+-+ ..-|..|+. .++-+|++|++.+++
T Consensus 150 ~~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 186 (364)
T PRK07865 150 ALIWLN-SPSNPTGRVLGVDHLRKVVAWARERGAVVAS 186 (364)
T ss_pred eEEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 333333 355788844 566778899986664
No 96
>PLN02206 UDP-glucuronate decarboxylase
Probab=58.47 E-value=43 Score=37.53 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=61.4
Q ss_pred CCCEEEeecChHHHHHHH-HHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEccee
Q 006803 493 DGDVLLTYGSSCVVEMIL-LYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL-~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 571 (630)
.+..||..|-++-|=.-| ....++| .+|++++.........+...+.. ..++++.-.-...++.++|.||=-|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G--~~V~~ld~~~~~~~~~~~~~~~~--~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG--DSVIVVDNFFTGRKENVMHHFSN--PNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc--CEEEEEeCCCccchhhhhhhccC--CceEEEECCccChhhcCCCEEEEeeee
Confidence 457899999999775443 3444444 56777764322111222222222 334555222222334578888776632
Q ss_pred EecCCc--------eecccchHHHHHHHHhCCCcEEEecccc
Q 006803 572 VLSNGT--------TYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 572 I~aNG~--------V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
...... -.|-.||..+.-+|+.++++|+.+.-..
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 211111 1678899999999999999877665443
No 97
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=57.91 E-value=94 Score=34.42 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=55.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
..|+|-+-+..+..+|....+.|. +|++. .|.+.|.. +. ..+...|+.++++.. ..+-..+. +..+|++
T Consensus 74 ~~v~~~sG~~Ai~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~l- 148 (418)
T TIGR01326 74 AALAVASGQAAITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFA- 148 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 567766666666666655554443 56654 35665533 22 456678999888753 23333333 4555554
Q ss_pred ceeEe-cCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 569 ASSVL-SNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 569 AdaI~-aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+.+. .+|.+.. --.|+-+|+.|+++++|=
T Consensus 149 -e~p~NPtg~v~d---l~~I~~la~~~~i~livD 178 (418)
T TIGR01326 149 -ETIGNPAINVPD---IEAIAEVAHAHGVPLIVD 178 (418)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEEE
Confidence 2221 1233322 245677789999988773
No 98
>PLN02409 serine--glyoxylate aminotransaminase
Probab=57.83 E-value=74 Score=34.76 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=47.0
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhc-----ccc
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMH-----EVT 563 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-----~Vd 563 (630)
|+|-+-++.++.++....+.| -+|+|.+ +..-+..+...+...|+.+..+... .+-..+. ++.
T Consensus 64 i~~~~gt~a~~~a~~~~~~~G--d~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k 139 (401)
T PLN02409 64 IFPTTGTGAWESALTNTLSPG--DKVVSFR--IGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIK 139 (401)
T ss_pred EEeCCcHHHHHHHHHhcCCCC--CEEEEeC--CCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCcc
Confidence 344333333344444333333 3577766 3334555555566678887777421 2222332 233
Q ss_pred EEEEcceeEecCCceecccchHHHHHH--HHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMV--AHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAla--Ak~~~VPV~V 600 (630)
.|++ .+.-...|.+.. --.++-+ |+.+|+.++|
T Consensus 140 ~v~~-~~~~~~tG~~~~---~~~i~~l~~~~~~g~~~vv 174 (401)
T PLN02409 140 AVCV-VHNETSTGVTND---LAGVRKLLDCAQHPALLLV 174 (401)
T ss_pred EEEE-EeecccccccCC---HHHHHHHHhhhccCcEEEE
Confidence 4443 444444554443 2234445 7778877665
No 99
>PRK15482 transcriptional regulator MurR; Provisional
Probab=57.72 E-value=1.3e+02 Score=31.44 Aligned_cols=42 Identities=14% Similarity=-0.108 Sum_probs=33.8
Q ss_pred CCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 527 SRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 527 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
++-..+-..+++.+.+.|+++..|||+..+.+-+.+|.+|.-
T Consensus 192 sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~ 233 (285)
T PRK15482 192 SGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDT 233 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEc
Confidence 333345556678899999999999999988888889999874
No 100
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=57.17 E-value=45 Score=38.95 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=59.4
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE----cc-hhHHHHhc--cccEEEEcceeEe-cCCc----------ee
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT----HI-NAVSYIMH--EVTRVFLGASSVL-SNGT----------TY 579 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI----~D-sAv~~iM~--~Vd~VivGAdaI~-aNG~----------V~ 579 (630)
...+|+|+-.. .+=|..|++.|.+.|+.+++. +| ..+..++. +.|.||=-|--.. .+-+ -+
T Consensus 379 ~~mkiLVtGa~-G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 379 PSLKFLIYGRT-GWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCceEEEECCC-chHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 44567777654 555888999998888887543 23 23444454 5788886653221 0111 37
Q ss_pred cccchHHHHHHHHhCCCcEEEecccccc
Q 006803 580 SRVGTACVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 580 NKiGT~~lAlaAk~~~VPV~V~aet~Kf 607 (630)
|-.||..|+-+|+.++++++++.-.+=|
T Consensus 458 N~~gt~~l~~a~~~~g~~~v~~Ss~~v~ 485 (668)
T PLN02260 458 NVVGTLTLADVCRENGLLMMNFATGCIF 485 (668)
T ss_pred HhHHHHHHHHHHHHcCCeEEEEccccee
Confidence 8999999999999999998877544444
No 101
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=57.09 E-value=1.4e+02 Score=32.56 Aligned_cols=49 Identities=8% Similarity=0.147 Sum_probs=32.7
Q ss_pred hhHHHHhccccEEEEccee----EecCCceeccc----chHHHHHHHHhCCCcEEEe
Q 006803 553 NAVSYIMHEVTRVFLGASS----VLSNGTTYSRV----GTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 553 sAv~~iM~~Vd~VivGAda----I~aNG~V~NKi----GT~~lAlaAk~~~VPV~V~ 601 (630)
.++-.+|..=..||++.+. +-.||.+.|-- +=...+++|...+--.+++
T Consensus 176 ~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIi 232 (313)
T PRK12454 176 EVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFII 232 (313)
T ss_pred HHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEE
Confidence 4555667666677777664 44677766643 3455688999998876654
No 102
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=56.84 E-value=82 Score=34.03 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=52.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
+.|++-+-+..+..+|......|. +|++.. +.+.|.. +. ..+...|+.+.++... .+...+. +..+|++
T Consensus 57 ~a~~~~sG~~Ai~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 131 (369)
T cd00614 57 AALAFSSGMAAISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYV- 131 (369)
T ss_pred CEEEEcCHHHHHHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 566665544455555554444443 455543 4554533 23 3455789999888543 3333343 3444544
Q ss_pred ceeEec-CCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLS-NGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~a-NG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+.+.. .|.+.. --.|+-+|+.||++++|
T Consensus 132 -e~~~np~g~~~d---l~~i~~la~~~g~~liv 160 (369)
T cd00614 132 -ESPTNPTLKVVD---IEAIAELAHEHGALLVV 160 (369)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 23322 233322 23577888999999887
No 103
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=56.76 E-value=92 Score=26.86 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEE-EEc---c--hhHHHHhc--cccEEEEcceeEecCCceec
Q 006803 509 ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCT-YTH---I--NAVSYIMH--EVTRVFLGASSVLSNGTTYS 580 (630)
Q Consensus 509 vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vT-lI~---D--sAv~~iM~--~Vd~VivGAdaI~aNG~V~N 580 (630)
+++..++. .|++|.+++ .++.|.+.||+|. ++. + -.+..++. ++|+||.=.+. .+....
T Consensus 5 ~~~~l~~l--G~~i~AT~g--------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~~~ 71 (90)
T smart00851 5 LAKRLAEL--GFELVATGG--------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQPH 71 (90)
T ss_pred HHHHHHHC--CCEEEEccH--------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Ccceec
Confidence 44444443 588888775 3577888999985 431 1 11333333 79999874321 133333
Q ss_pred ccchHHHHHHHHhCCCcEE
Q 006803 581 RVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 581 KiGT~~lAlaAk~~~VPV~ 599 (630)
+ -.+.+=-+|-.++||++
T Consensus 72 ~-d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 72 E-DGKALRRAAENIDIPGA 89 (90)
T ss_pred c-CcHHHHHHHHHcCCCee
Confidence 3 45677778889999975
No 104
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=56.64 E-value=3.3e+02 Score=30.52 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=55.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh--CCCcEEEEcchhHHHHh---c--cccEE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA--KGLSCTYTHINAVSYIM---H--EVTRV 565 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~--~GI~vTlI~DsAv~~iM---~--~Vd~V 565 (630)
.|.++..++....+..+-+...+.|-...++++.+....--.++...|.+ .+..+.++.+.-..-+. . +.|++
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDli 381 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLL 381 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEE
Confidence 57888888988888877777777887776566654333323334344544 23344443333332222 2 34444
Q ss_pred EEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+|+..-..+|+..+||++.++
T Consensus 382 ----------------iG~s~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 382 ----------------IGNTYGKYIARDTDIPLVRFG 402 (435)
T ss_pred ----------------EECccHHHHHHHhCCCEEEee
Confidence 234445688999999998775
No 105
>CHL00194 ycf39 Ycf39; Provisional
Probab=56.56 E-value=68 Score=33.58 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=61.3
Q ss_pred EEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE--cc-hhHHHHhccccEEEEccee
Q 006803 496 VLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT--HI-NAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 496 vILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~Vd~VivGAda 571 (630)
+||..|-++.+=. +++.+.++| ++|+++.-++. . +..|...|+.+... .| ..+..++..+|.||--+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~----~-~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLR----K-ASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChH----H-hhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 5888898887754 445555666 45555532221 1 23344557655432 22 4566678889988865433
Q ss_pred EecCCc---eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 572 VLSNGT---TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 572 I~aNG~---V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
...+.. -+|..||..+.-+|++.+|.-+|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 222211 236678899999999999976665444
No 106
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=56.40 E-value=2.5e+02 Score=29.54 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=47.8
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--c-hhHHHHhcc---cc
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--I-NAVSYIMHE---VT 563 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~---Vd 563 (630)
++...+.|++.+.+.....++....+ +.-.|++.+ |.+.+...+..+ .|.++..+. | ..+-.++.. ..
T Consensus 96 ~~~~~~~i~~~~g~~~~~~~l~~~~~--~gd~V~~~~--~~~~~~~~~~~~--~g~~~~~~~~~d~~~l~~~i~~~~~~~ 169 (385)
T PRK05958 96 WFGAERALLFSSGYAANLAVLTALAG--KGDLIVSDK--LNHASLIDGARL--SRARVRRYPHNDVDALEALLAKWRAGR 169 (385)
T ss_pred HhCCCcEEEECcHHHHHHHHHHHhCC--CCCEEEEeC--ccCHHHHHHHHh--cCCceEEeCCCCHHHHHHHHHhccCCC
Confidence 33344566665544444433333322 333455543 555443333333 577666653 2 344444432 23
Q ss_pred EEEEcceeEec-CCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLS-NGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~a-NG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++++ ...+.. .|.+.. -..|+-+|+.|++.++|
T Consensus 170 ~lvi-~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~ 203 (385)
T PRK05958 170 ALIV-TESVFSMDGDLAP---LAELVALARRHGAWLLV 203 (385)
T ss_pred eEEE-EEecccCCCCcCC---HHHHHHHHHHhCCEEEE
Confidence 3333 222222 222211 34688889999997765
No 107
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=56.25 E-value=3e+02 Score=29.93 Aligned_cols=106 Identities=13% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-hhHHHH
Q 006803 480 DKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-NAVSYI 558 (630)
Q Consensus 480 ~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sAv~~i 558 (630)
.+.+.+ ..+++. |..|+.++....+..+.+-+.+.|-...++++......+=.++-+.|.+....+..-.| ..+..+
T Consensus 259 ~~~l~~-~~~~l~-g~~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~ 336 (398)
T PF00148_consen 259 EDALAD-YRERLG-GKRVAIYGDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEESDPEVIIDPDPEEIEEL 336 (398)
T ss_dssp HHHHHH-HHHHHT-T-EEEEESSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTTCSEEEESCBHHHHHHH
T ss_pred HHHHHh-hHHhhc-CceEEEEcCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCCCcEEEeCCCHHHHHHH
Confidence 334443 334443 78888999998888777777777877666666554332223344445444222222223 244444
Q ss_pred hcc--ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 559 MHE--VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 559 M~~--Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
+.+ .|++| |+..-..+|+..++|++.++-
T Consensus 337 l~~~~pdl~i----------------g~~~~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 337 LEELKPDLLI----------------GSSHERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp HHHHT-SEEE----------------ESHHHHHHHHHTT--EEE-SS
T ss_pred HHhcCCCEEE----------------echhhHHHHHHhCCCeEEEeC
Confidence 443 66653 344456778888888887643
No 108
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=55.95 E-value=23 Score=32.61 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=61.1
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceE-EEEcCCCC-CchHHHHHHHHH--hCCCcEEEEcchhHHHHhccccEEEEccee
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFR-VVVVDSRP-KHEGQALLRRLL--AKGLSCTYTHINAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~-ViV~ESRP-~~eG~~La~eL~--~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 571 (630)
.|+.+|+++-+=..|.++..+...++ |-+++.++ .+.|..+..-+. ..|++++ ..+..++.++|.||
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~~~~~DVvI----- 72 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEELLEEADVVI----- 72 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHHTTH-SEEE-----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHhcccCCEEE-----
Confidence 58889998877776666666666777 66777777 466665543222 3455544 34455666677654
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
++-+.-+++..+-.|..+++|+++.+--|
T Consensus 73 -----DfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 73 -----DFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp -----EES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred -----EcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 34477788888888888899999976544
No 109
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.57 E-value=1.5e+02 Score=33.49 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=55.8
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcc----hhHHHHhccccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivG 568 (630)
..|+|-+-...+..+|....+.| -+|++ +.+.+.|- .+. ..|...||.++++.. ..+-..+..=+++|+
T Consensus 78 ~av~~~SG~aAi~~al~all~~G--D~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~- 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSG--DHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY- 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCC--CEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-
Confidence 35554444444444555444444 36666 34555543 333 447889999999853 355555654455555
Q ss_pred ceeEecCCceeccc----chHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRV----GTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKi----GT~~lAlaAk~~~VPV~V 600 (630)
.+.. -|.. ---.|+-+|+.||++++|
T Consensus 153 ~e~p------gnP~~~v~Di~~I~~iA~~~gi~liv 182 (432)
T PRK06702 153 AESL------GNPAMNVLNFKEFSDAAKELEVPFIV 182 (432)
T ss_pred EEcC------CCccccccCHHHHHHHHHHcCCEEEE
Confidence 3432 2333 356788899999998877
No 110
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=55.49 E-value=67 Score=34.82 Aligned_cols=70 Identities=11% Similarity=0.213 Sum_probs=49.8
Q ss_pred HHHHHHHhCCCcEEEEcch--------hHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHh----CCCcEEEec
Q 006803 535 ALLRRLLAKGLSCTYTHIN--------AVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA----FRVPVLICC 602 (630)
Q Consensus 535 ~La~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~----~~VPV~V~a 602 (630)
+.+..|.+.||++++|... ++-...++...|| ++.++.+..-.|....+.++.+ ...||.-++
T Consensus 218 ~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv-----~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~ 292 (327)
T CHL00144 218 QAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVL-----IVEECMKTGGIGAELIAQINEHLFDELDAPIVRLS 292 (327)
T ss_pred HHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEE-----EEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEc
Confidence 3446677788888887542 3444455666665 4678888888999999999887 478999887
Q ss_pred ccccccc
Q 006803 603 EAYKFHE 609 (630)
Q Consensus 603 et~Kf~~ 609 (630)
-...|.+
T Consensus 293 ~~d~~~~ 299 (327)
T CHL00144 293 SQDVPTP 299 (327)
T ss_pred cCCCcCC
Confidence 6655544
No 111
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=54.95 E-value=81 Score=30.27 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhC-CCcEEEEcc------hhHHHHhc--cccEEEEcceeEecCC
Q 006803 506 VEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAK-GLSCTYTHI------NAVSYIMH--EVTRVFLGASSVLSNG 576 (630)
Q Consensus 506 V~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTlI~D------sAv~~iM~--~Vd~VivGAdaI~aNG 576 (630)
+..++....+.=..|++|.+++ .+..|.+. ||+|+.+.. ..+..++. ++|+||-=.|-. |
T Consensus 19 l~~~a~~l~~ll~Gf~l~AT~g--------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~---~ 87 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELYATGT--------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPL---T 87 (142)
T ss_pred HHHHHHHHHHHhcCCEEEEeCh--------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCC---C
Confidence 4455555444411488888876 56778888 999987731 11333333 699997643311 2
Q ss_pred ceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 577 TTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 577 ~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.-......+.|=-+|-.||||++-.-.+-
T Consensus 88 ~~~~~~D~~~IRR~Av~~~IP~~T~l~tA 116 (142)
T PRK05234 88 AQPHDPDVKALLRLADVWNIPVATNRATA 116 (142)
T ss_pred CCcccchHHHHHHHHHHcCCCEEcCHHHH
Confidence 21213345577778888999999755443
No 112
>PLN02778 3,5-epimerase/4-reductase
Probab=54.75 E-value=56 Score=34.26 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.1
Q ss_pred ecccchHHHHHHHHhCCCcEEEeccc
Q 006803 579 YSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 579 ~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.|-.||..++-+|+++++.+++..-+
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~~v~~sS~ 111 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLVLTNYATG 111 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 68889999999999999998777533
No 113
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=54.66 E-value=1.5e+02 Score=32.36 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=50.6
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcchh---HHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHINA---VSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~DsA---v~~iM~-~Vd~VivG 568 (630)
++++|-+-+..+..+|......|. +|++. ++.+.+. .+. ..+...|+.++++...- +-..+. +..+|++-
T Consensus 71 ~~~~~~sG~~Ai~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le 146 (380)
T TIGR01325 71 RAVATATGMSAIQAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE 146 (380)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 456654444445555544434444 45553 3444443 333 45677899998886432 222332 34444431
Q ss_pred ceeEe-cCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVL-SNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~-aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+. ..|.+.. --.++-+|+.+|++|+|
T Consensus 147 --~p~np~g~~~d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 147 --TPSNPLGELVD---IAALAELAHAIGALLVV 174 (380)
T ss_pred --CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 111 1233322 24567778999998886
No 114
>PLN02656 tyrosine transaminase
Probab=54.65 E-value=1.8e+02 Score=31.86 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=52.2
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 560 (630)
+....+|+|.|.+..+..++....+.|. +|++. .|.+.+...+..+ .|+.+.++.. ..+...+.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGA--NILLP--RPGFPIYELCAAF--RHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCCC--eEEEe--CCCCCcHHHHHHH--cCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 4455788888877766555554434343 55554 3555555444333 5777766642 11222222
Q ss_pred cccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
.-+++++ +.|- -|.+|+. .++-+|+.|++++++
T Consensus 168 ~~~~~v~-----l~~P--~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 168 QNTVALV-----IINP--GNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred cCceEEE-----EECC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2122222 2232 3677755 366778889988775
No 115
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=54.53 E-value=2.7e+02 Score=29.43 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHHhCCCcEEEEcchhHHH----HhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 536 LLRRLLAKGLSCTYTHINAVSY----IMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 536 La~eL~~~GI~vTlI~DsAv~~----iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
+...|...|+++.++.+....+ .+.+=|.||+ |...|. .--+..++-.||+.|+|+++++...
T Consensus 65 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~----iS~sG~---t~~~~~~~~~ak~~g~~vi~iT~~~ 131 (326)
T PRK10892 65 MAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA----ISNSGE---SSEILALIPVLKRLHVPLICITGRP 131 (326)
T ss_pred HHHHHhcCCceeEEeChHHhhccccccCCCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4456667888888875543332 2334455443 334453 3345667788999999999987653
No 116
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=54.50 E-value=15 Score=40.55 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=38.1
Q ss_pred HHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccccccc
Q 006803 555 VSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFH 608 (630)
Q Consensus 555 v~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~ 608 (630)
+-..++.+|+||.|=-++-+. ++..|+ ..-+|-+||.|+|||+++|.+..-+
T Consensus 278 le~~v~daDLVITGEGr~D~Q-s~~GK~-pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 278 LEDAVKDADLVITGEGRIDSQ-SLHGKT-PIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred HHHhhccCCEEEeCCCccccc-ccCCcc-chHHHHhhhhhCCCEEEEecccccC
Confidence 345678999999996666433 333333 3457889999999999999986544
No 117
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=53.72 E-value=41 Score=31.81 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=45.3
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCC
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRV 596 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~V 596 (630)
+...++--.+..|...|...+.-|.+.|+++.++. +|.|+++. .....--...++-.|+++++
T Consensus 23 ~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i~~-------~~~~~~~~~~~~~~~~~~~~ 85 (196)
T cd00287 23 GGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVISG-------LSPAPEAVLDALEEARRRGV 85 (196)
T ss_pred CCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEEec-------ccCcHHHHHHHHHHHHHcCC
Confidence 33344444456777889999999999999999998 45555544 32221223445556888999
Q ss_pred cEEEec
Q 006803 597 PVLICC 602 (630)
Q Consensus 597 PV~V~a 602 (630)
|+++=.
T Consensus 86 ~v~~D~ 91 (196)
T cd00287 86 PVVLDP 91 (196)
T ss_pred eEEEeC
Confidence 987644
No 118
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=53.69 E-value=82 Score=31.15 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=56.4
Q ss_pred EEeecChHHHHHHH-HHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHHhccccEEEEcceeE
Q 006803 497 LLTYGSSCVVEMIL-LYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 497 ILT~g~S~tV~~vL-~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivGAdaI 572 (630)
||.+|-++.+-.-+ ..+.. ..++|.++=-.+ -...+..|...|+.+..... .++...++.+|.||+--...
T Consensus 1 I~V~GatG~~G~~v~~~L~~--~~~~V~~l~R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS--AGFSVRALVRDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH--TTGCEEEEESSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHh--CCCCcEEEEecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 67888877554333 33333 345554443222 34567889999997653222 56666777788776532221
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
. -.-.-....+.-+|+..||..||..+.
T Consensus 76 ~----~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 76 H----PSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp C----CCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred h----hhhhhhhhhHHHhhhccccceEEEEEe
Confidence 1 111223455777888889999996443
No 119
>PRK06234 methionine gamma-lyase; Provisional
Probab=53.66 E-value=1.2e+02 Score=33.36 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=50.6
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
+.|+|-+-+..+..+|......|. +|++.+ |.+.+.. +. ..+...|+.++++... .+-..+. +..+|++-
T Consensus 81 ~~l~~~sG~~Ai~~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~ie 156 (400)
T PRK06234 81 AAVVAASGMGAISSSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLE 156 (400)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEE
Confidence 456665555555555544444444 566554 5554433 22 4567789999888543 2333332 33444432
Q ss_pred ceeEecCCceecccchHHHHHHHHhC--CCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAF--RVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~--~VPV~V 600 (630)
.---..|.+.. --.|+-+|+.| ++.|+|
T Consensus 157 -sP~NPtG~v~d---l~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 157 -TPANPTLKVTD---IKAISNIAHENNKECLVFV 186 (400)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHhcCCCCEEEE
Confidence 11112233332 23677778886 776665
No 120
>PLN02214 cinnamoyl-CoA reductase
Probab=53.42 E-value=1.1e+02 Score=32.63 Aligned_cols=109 Identities=18% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhccccEEE
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMHEVTRVF 566 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~Vd~Vi 566 (630)
.+.+||..|.++.+= .++..+.++|. +|+++.-.+..........|...+-.++++ .| ..+..+|..+|.||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 356788888887654 44455556664 555443222211111122333221134444 23 45566778889888
Q ss_pred EcceeEecCC---ceecccchHHHHHHHHhCCCcEEEecc
Q 006803 567 LGASSVLSNG---TTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 567 vGAdaI~aNG---~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
--|-.+..+- .-.|-.||..+.-+|+.+++.-+|...
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~S 126 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITS 126 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 7764332111 123678999999999999986444433
No 121
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=53.36 E-value=71 Score=29.73 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=53.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
.|..||.+|..++...++..+++.|-. +|+|+. |-......|+..+ .+..++++........+.++|.||...
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~-~i~i~n-Rt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAK-EITIVN-RTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSS-EEEEEE-SSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEEE-CCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEec
Confidence 478999999999999999999887654 344443 4444466677777 556677777777778888999887643
No 122
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=53.36 E-value=16 Score=40.46 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=37.6
Q ss_pred HHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccccccc
Q 006803 556 SYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFH 608 (630)
Q Consensus 556 ~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~ 608 (630)
-..++.+|+||.|=-++-. ....--..+.+|-.|+.|+||||++|.+....
T Consensus 278 ~~~l~~ADlVITGEG~~D~--Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 278 EQKIKDADLVITGEGRLDR--QSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred HHHhcCCCEEEECCCcccc--cccCCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 3456789999999655532 22333356778889999999999999987554
No 123
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=53.30 E-value=2.5e+02 Score=30.18 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=51.1
Q ss_pred CCEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHH--HHHHhCCCcEEEEcc--------hhHHHHhc-
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALL--RRLLAKGLSCTYTHI--------NAVSYIMH- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~D--------sAv~~iM~- 560 (630)
.++|+|.|.+..+..++..... .+..-+|++.+ |.+.+.... ..+...|+.+.++.. ..+...+.
T Consensus 79 ~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 79 ENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECC--cchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 3567776666655555443311 12223666654 343333222 234567888887742 12223332
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+..+|++ ++.=...|.+.. --.|+-+|+.||+.++|
T Consensus 157 ~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 157 RTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVV 192 (398)
T ss_pred CceEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 3444433 222233444422 23477788999988876
No 124
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=53.21 E-value=1.4e+02 Score=32.30 Aligned_cols=15 Identities=47% Similarity=0.780 Sum_probs=12.2
Q ss_pred HHHHHHHhCCCcEEE
Q 006803 586 CVAMVAHAFRVPVLI 600 (630)
Q Consensus 586 ~lAlaAk~~~VPV~V 600 (630)
.++-+|++||++|+|
T Consensus 179 ~I~~la~~~g~~liv 193 (387)
T PRK09331 179 KVAKVAHEYGIPFLL 193 (387)
T ss_pred HHHHHHHHcCCEEEE
Confidence 477788899988876
No 125
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=52.97 E-value=13 Score=36.95 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCcEEEEcchhHHH-HhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 534 QALLRRLLAKGLSCTYTHINAVSY-IMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 534 ~~La~eL~~~GI~vTlI~DsAv~~-iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
..++..|.+.|+.|++...+++.. -+..-|.|||||..=+ |..--.++.+.-.-...-.+.|+-+.
T Consensus 19 ~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~A~f 85 (175)
T COG4635 19 EYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPSAFF 85 (175)
T ss_pred HHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 345688999999999999999987 4668999999996433 45555566666555666567775543
No 126
>PRK12320 hypothetical protein; Provisional
Probab=52.94 E-value=51 Score=39.55 Aligned_cols=99 Identities=17% Similarity=0.089 Sum_probs=59.9
Q ss_pred EEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE--EcchhHHHHhccccEEEEcceeE
Q 006803 496 VLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY--THINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 496 vILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl--I~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.||..|-++-+=. ++..+.++| .+|++++..+.. +...++.+.. ++|..+..++..+|.||--|...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G--~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG--HTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 5888888886653 444455555 577777754321 1112322211 12344455566788888766432
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
..+..-.|-.||..+.-+|+.+++.|+.+...
T Consensus 72 ~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 72 TSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred ccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 22223368899999999999999987776544
No 127
>PRK13938 phosphoheptose isomerase; Provisional
Probab=52.73 E-value=2.6e+02 Score=28.20 Aligned_cols=37 Identities=3% Similarity=-0.150 Sum_probs=29.2
Q ss_pred chHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEE
Q 006803 531 HEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL 567 (630)
Q Consensus 531 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 567 (630)
.+=..+++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 127 ~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 127 MSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 3344556888899999999998888888778888774
No 128
>PRK07568 aspartate aminotransferase; Provisional
Probab=52.49 E-value=1.6e+02 Score=31.66 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=50.6
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---h--------hHHHHhc
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---N--------AVSYIMH 560 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---s--------Av~~iM~ 560 (630)
....+++|-|.+..+..++......| -+|++.+ |.+.+.. ..+...|+.+..+.. . .+...+.
T Consensus 87 ~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~ 160 (397)
T PRK07568 87 EPDEILITNGGSEAILFAMMAICDPG--DEILVPE--PFYANYN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT 160 (397)
T ss_pred CcceEEEcCChHHHHHHHHHHhcCCC--CEEEEec--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC
Confidence 34467778777776555554433333 3566654 6554432 224456887776641 1 1212222
Q ss_pred -cccEEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
++.+|++. | .-|..|+ -.|+-+|+++++.+++
T Consensus 161 ~~~~~v~i~------~--p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 161 PKTKAILIS------N--PGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred ccceEEEEE------C--CCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 33333222 2 2366665 3467778899987765
No 129
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=52.44 E-value=97 Score=33.71 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCCEEEeecChH----HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHHhc--ccc
Q 006803 493 DGDVLLTYGSSC----VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYIMH--EVT 563 (630)
Q Consensus 493 dgdvILT~g~S~----tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~--~Vd 563 (630)
.|..|-.||-|- .+..++....+++..++|+|+-+- ..|..++..+...++.+.|.+. ..+..+++ +-|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 467899999885 455666666667777887766553 3467777655566788888764 24445555 467
Q ss_pred EEEEc-ceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 564 RVFLG-ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 564 ~VivG-AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.|++. .| +..| +...|+..++|++++.
T Consensus 127 ~v~~~~~~-~~~~-----------~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 127 LVIIMETE-LWPN-----------LIAELKRRGIPLVLAN 154 (425)
T ss_pred EEEEEecc-hhHH-----------HHHHHHHCCCCEEEEe
Confidence 77543 11 1111 3345788899998864
No 130
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=52.41 E-value=3.1e+02 Score=28.93 Aligned_cols=77 Identities=9% Similarity=0.106 Sum_probs=41.8
Q ss_pred ccCCCEEEeecChH-----HHHHHHHHHHHcCCceEEEEcCCCCCchHH--HHHHHHHhCCCcEEEEcch-hHHHHhc--
Q 006803 491 VRDGDVLLTYGSSC-----VVEMILLYAHELGKQFRVVVVDSRPKHEGQ--ALLRRLLAKGLSCTYTHIN-AVSYIMH-- 560 (630)
Q Consensus 491 I~dgdvILT~g~S~-----tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~--~La~eL~~~GI~vTlI~Ds-Av~~iM~-- 560 (630)
+..+.+|+-.|.++ |+..+...+...+...+|.++.+.++.-|. .|...-...|+++..+.+. .+...+.
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL 270 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc
Confidence 33456777777666 455555555443113566767776766544 2223333468888766552 3334433
Q ss_pred -cccEEEE
Q 006803 561 -EVTRVFL 567 (630)
Q Consensus 561 -~Vd~Viv 567 (630)
..|.|||
T Consensus 271 ~~~d~vli 278 (282)
T TIGR03499 271 RDKDLILI 278 (282)
T ss_pred cCCCEEEE
Confidence 4566665
No 131
>PRK14852 hypothetical protein; Provisional
Probab=52.23 E-value=1.6e+02 Score=36.85 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcC------C---CCCc--h-
Q 006803 465 CNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVD------S---RPKH--E- 532 (630)
Q Consensus 465 ~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~E------S---RP~~--e- 532 (630)
.+.-+.|.+++.......|+..+.++|. +..|+..|.+++--.++......|.. +++++| | |-.+ +
T Consensus 304 ~~~~~~~~~~ry~Rqi~lig~e~Q~kL~-~srVlVvGlGGlGs~ia~~LAraGVG-~I~L~D~D~Ve~SNLNRQ~l~~~~ 381 (989)
T PRK14852 304 LETRDAYTDIAFSRNLGLVDYAGQRRLL-RSRVAIAGLGGVGGIHLMTLARTGIG-NFNLADFDAYSPVNLNRQYGASIA 381 (989)
T ss_pred HHHHHHHHHHHhhchHhhcCHHHHHHHh-cCcEEEECCcHHHHHHHHHHHHcCCC-eEEEEcCCEecccccccccCCChh
Confidence 3455666666432222335555566665 57899999998777777776777764 333332 1 2111 1
Q ss_pred --H----HHHHHHHHhC--CCcEEEEc----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 533 --G----QALLRRLLAK--GLSCTYTH----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 533 --G----~~La~eL~~~--GI~vTlI~----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
| ..+++.|.+. .|+++.+. ...+..++..+|.||-+.|.+.. .+--+... .|..+|||||.
T Consensus 382 dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~------~~rr~l~~-~c~~~~IP~I~ 454 (989)
T PRK14852 382 SFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFAL------DIRRRLFN-RALELGIPVIT 454 (989)
T ss_pred hCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccH------HHHHHHHH-HHHHcCCCEEE
Confidence 2 1233566654 46666663 34566677899999988776421 12223333 36889999997
Q ss_pred ecc
Q 006803 601 CCE 603 (630)
Q Consensus 601 ~ae 603 (630)
++.
T Consensus 455 ag~ 457 (989)
T PRK14852 455 AGP 457 (989)
T ss_pred eec
Confidence 643
No 132
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=51.86 E-value=1.8e+02 Score=26.12 Aligned_cols=101 Identities=11% Similarity=0.106 Sum_probs=51.5
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH-------HH---h--
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS-------YI---M-- 559 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~-------~i---M-- 559 (630)
....+++|.|.+..+..++..+.. ...+|++.+. .+.|... ..+...|..+.++....-. .+ +
T Consensus 16 ~~~~~~~~~~~t~a~~~~~~~~~~--~~~~v~~~~~--~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 90 (170)
T cd01494 16 GNDKAVFVPSGTGANEAALLALLG--PGDEVIVDAN--GHGSRYW-VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAK 90 (170)
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCC--CCCEEEEeec--ccceehh-hHHHhcCCEEEEeccCCCCccchhhhhhhhcccc
Confidence 445677777666666666665533 2345666653 2222221 3445567777766422111 11 1
Q ss_pred ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 560 HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 560 ~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+...|++.. ...+++....+ -.++-+|+.+++++++=
T Consensus 91 ~~~~~v~~~~--~~~~~g~~~~~--~~l~~~~~~~~~~li~D 128 (170)
T cd01494 91 PNVALIVITP--NTTSGGVLVPL--KEIRKIAKEYGILLLVD 128 (170)
T ss_pred CceEEEEEec--CcCCCCeEcCH--HHHHHHHHHcCCEEEEe
Confidence 1333333331 22233333322 56888889999988873
No 133
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=51.73 E-value=2.6e+02 Score=29.37 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=51.5
Q ss_pred CCEEEeecChHHHHHHHHHHHHc--CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhcccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHEL--GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMHEVT 563 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~--gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~Vd 563 (630)
...++|-|.+.....++..+... ++.-+|++.+.. +.. +...+...|+.+..+.. ..+-..+..-+
T Consensus 77 ~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~--h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~ 152 (371)
T PRK13520 77 AYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESA--HFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNT 152 (371)
T ss_pred CCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcc--hHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCC
Confidence 35677766555555555555432 233567776642 211 22233446888877752 12223333223
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..|+..+.-...|.+. . --.|+-+|+.||+.|+|
T Consensus 153 ~~vi~~~~~~~tG~~~-~--l~~I~~l~~~~g~~liv 186 (371)
T PRK13520 153 IGIVGIAGTTELGQVD-P--IPELSKIALENGIFLHV 186 (371)
T ss_pred EEEEEEcCCcCCcccC-C--HHHHHHHHHHcCCCEEE
Confidence 3333322223345443 3 34577889999999887
No 134
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=51.62 E-value=1.2e+02 Score=33.99 Aligned_cols=100 Identities=12% Similarity=0.183 Sum_probs=61.8
Q ss_pred cCCCEEEeecChHHHHHHHHH---HHH-cCCceEEEEcCCCCCchH-HHHHHHHHhCCCcEEEEcchhHH--------HH
Q 006803 492 RDGDVLLTYGSSCVVEMILLY---AHE-LGKQFRVVVVDSRPKHEG-QALLRRLLAKGLSCTYTHINAVS--------YI 558 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~---A~e-~gk~f~ViV~ESRP~~eG-~~La~eL~~~GI~vTlI~DsAv~--------~i 558 (630)
...++|.|-|-+....-.|.- ++. .++.-|+|+.... ... ...++.|...|+.|||+.-..-+ -.
T Consensus 60 ~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~a 137 (386)
T COG1104 60 DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEA 137 (386)
T ss_pred CCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHh
Confidence 346899999988866655553 332 2244567766542 111 12347787889999999754322 22
Q ss_pred hccccEEEEcceeEecCCceecccchHH----HHHHHHhCCCcEEE
Q 006803 559 MHEVTRVFLGASSVLSNGTTYSRVGTAC----VAMVAHAFRVPVLI 600 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aNG~V~NKiGT~~----lAlaAk~~~VPV~V 600 (630)
++ =|.++|. .+. +=|-+||.| ++-+||+++|+|.|
T Consensus 138 l~-~~T~LVS--im~----aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 138 LR-PDTILVS--IMH----ANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred cC-CCceEEE--EEe----cccCeeecccHHHHHHHHHHcCCeEEE
Confidence 22 2333332 223 447788865 88999999999988
No 135
>PRK15005 universal stress protein F; Provisional
Probab=51.55 E-value=1.4e+02 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=24.9
Q ss_pred cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ 601 (630)
++|+|++|++. +| +.. -+|+- ..-+.++..+||+|+
T Consensus 107 ~~DLIV~Gs~~---~~-~~~~llGS~-a~~vl~~a~cpVlvV 143 (144)
T PRK15005 107 PADMIIIASHR---PD-ITTYLLGSN-AAAVVRHAECSVLVV 143 (144)
T ss_pred CCCEEEEeCCC---CC-chheeecch-HHHHHHhCCCCEEEe
Confidence 69999999873 33 332 34664 445577788999986
No 136
>PRK10342 glycerate kinase I; Provisional
Probab=51.24 E-value=20 Score=39.97 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccccccc
Q 006803 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFH 608 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~ 608 (630)
.|..+.-+|.. +-..|+.+|+||.|==++- .....--..+.||-.|+.|+||||++|.+...+
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADLVITGEG~~D--~QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 267 SGIEIVTTALN------------LEEHIHDCTLVITGEGRID--SQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred CHHHHHHHhcC------------HHHHhccCCEEEECCCcCc--ccccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 57777655543 3445778999999965442 223333345678889999999999999987554
No 137
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=51.16 E-value=1.3e+02 Score=33.33 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=50.4
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH-HHHH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG-QALL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~~La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
.+|+|.|-+..+..++....+.| -+|++. .|.+.| ..+. ..+...|+.++++.. ..+...+. +..+|++.
T Consensus 70 ~ivvt~gg~~Ai~~~l~all~~G--d~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~le 145 (388)
T PRK08861 70 GAVVTNCGTSALNLWVSALLGPD--DLIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLE 145 (388)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 45555554545554554433333 345554 466665 3333 334556888888753 22333333 45555544
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.---..|.++.. ..|+-+|++++++|+|
T Consensus 146 -sP~NPtG~v~dl---~~I~~la~~~gi~vIv 173 (388)
T PRK08861 146 -TPSNPLVRVVDI---AELCQKAKAVGALVAV 173 (388)
T ss_pred -CCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 111122333331 2577778889987765
No 138
>PRK09028 cystathionine beta-lyase; Provisional
Probab=50.96 E-value=1.7e+02 Score=32.61 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=54.6
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
++++|-|-+..+..++....+.|. +|++.+ |.+.|. .++ ..|...||.++++.. ..+...+. +..+|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD--~Vvv~~--~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGD--HLLMVD--SCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEEC--CCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 566666655555555554444453 667664 345444 445 457778999988742 33444444 44444442
Q ss_pred ceeEecCCceecccch----HHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGT----ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT----~~lAlaAk~~~VPV~V 600 (630)
..-|..|. ..|+-+||.|++.++|
T Consensus 154 --------spsNPtg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 154 --------SPGSITMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 23455553 4567778899987775
No 139
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.66 E-value=1.7e+02 Score=32.91 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=48.6
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcc-h---hHHHHhccccEEEEcc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHI-N---AVSYIMHEVTRVFLGA 569 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D-s---Av~~iM~~Vd~VivGA 569 (630)
.|+|-+-+..+..+|....+.|. +|++..+ .+.|.. +. ..|...|+.++++.| . .+-..+..=+++|+ .
T Consensus 87 av~~sSG~aAi~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~-i 161 (436)
T PRK07812 87 ALLLASGQAAETFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFF-A 161 (436)
T ss_pred EEEEccHHHHHHHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEE-E
Confidence 45554444444445544444443 5666654 334433 23 446678888888742 1 22222322233333 2
Q ss_pred eeEe-cCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 570 SSVL-SNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 570 daI~-aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+.+. ..|.+.. + -.|+-+||.||++|+|=
T Consensus 162 e~~sNp~G~v~D-l--~~I~~la~~~gi~liVD 191 (436)
T PRK07812 162 ETISNPQIDVLD-I--PGVAEVAHEAGVPLIVD 191 (436)
T ss_pred ECCCCCCCeecC-H--HHHHHHHHHcCCEEEEE
Confidence 2222 1232222 1 34788889999988773
No 140
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=50.55 E-value=1.8e+02 Score=31.06 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=50.9
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----------hHHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----------AVSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 560 (630)
+...++++|.|.+..+..++. +...| .|+|. .|.+..... .+...|+.+..+... ....+-+
T Consensus 70 ~~~~~i~it~Ga~~~l~~~~~-~l~~g---~viv~--~P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (356)
T PRK08056 70 VPASWILAGNGETESIFAVVS-GLKPR---RAMIV--TPGFAEYRR--ALQQVGCEIRRYSLREADGWQLTDAILEALTP 141 (356)
T ss_pred cChhhEEECCCHHHHHHHHHH-HhCCC---CEEEe--CCCcHHHHH--HHHHcCCeEEEEecccccCCCccHHHHHhccC
Confidence 344467777776666555554 34333 35444 366654433 344568777766321 1111223
Q ss_pred cccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
++.+|++. ..-|.+|+. .|+-.|+.|++.+++
T Consensus 142 ~~k~v~l~--------~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 142 DLDCLFLC--------TPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCEEEEe--------CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 45555542 345677743 456668888887765
No 141
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=49.95 E-value=1.6e+02 Score=32.13 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=68.4
Q ss_pred HHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC---------CC-c------hH----HHHHHHHH
Q 006803 482 VIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR---------PK-H------EG----QALLRRLL 541 (630)
Q Consensus 482 ~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR---------P~-~------eG----~~La~eL~ 541 (630)
.|+..+.++|.+ ..||..|..++=..++......|.. ++.++|.. -. + +| ..+.+.|.
T Consensus 13 ~~G~~~Q~~L~~-~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 13 GIGEEGQRKIRE-KHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred hcCHHHHHhhcC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 466677777764 6799999988766777776677753 33333322 11 0 12 11225565
Q ss_pred hC--CCcEEEEcc----hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 542 AK--GLSCTYTHI----NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 542 ~~--GI~vTlI~D----sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+. ++.++.+.. ..+..++.++|.||.+.|.... -+.+..+|+.+++|++.+
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEE
Confidence 54 465555431 3345667889999999875432 256778899999999865
No 142
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=49.92 E-value=1.8e+02 Score=32.22 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=49.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
..|++-+.+..+..+|......|. +|++.+ |.+.|.. +. ..+...|+.+.++.. ..+...+. +..+|++-
T Consensus 81 ~~i~~ssG~~Ai~~~l~all~~GD--~Vi~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie 156 (398)
T PRK08249 81 AATAFSTGMAAISNTLYTFLKPGD--RVVSIK--DTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLE 156 (398)
T ss_pred eEEEeCChHHHHHHHHHHhcCCCC--EEEEcC--CchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEE
Confidence 445554444444444444434443 555543 5555543 33 346678998887653 22333333 44555542
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
. ---..|.+.. --.|+-+|+.|+++++|
T Consensus 157 ~-p~NPtg~v~d---l~~I~~la~~~gi~liv 184 (398)
T PRK08249 157 T-PTNPTLKIVD---IERLAAAAKKVGALVVV 184 (398)
T ss_pred C-CCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 1 1112233332 23577789999998876
No 143
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=49.83 E-value=52 Score=33.38 Aligned_cols=101 Identities=16% Similarity=0.067 Sum_probs=61.6
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEE--EEcc-hhHHHHhccc-cEEEEcceeE
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCT--YTHI-NAVSYIMHEV-TRVFLGASSV 572 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vT--lI~D-sAv~~iM~~V-d~VivGAdaI 572 (630)
||+.|-++-|=.-|.....+. ..+|+.++..+....... .++... -++| ..+...+..+ |.||--|-..
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 888888887755554433321 567777765443322111 222211 2223 5666667777 8887755554
Q ss_pred ecCCc---------eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 573 LSNGT---------TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 573 ~aNG~---------V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
...+. .+|-.||..+.-+|+..+++-+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 43333 589999999999999988877777554
No 144
>PRK14012 cysteine desulfurase; Provisional
Probab=49.67 E-value=3.7e+02 Score=29.13 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=49.2
Q ss_pred CEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcc--------hhHHHHhcccc
Q 006803 495 DVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHI--------NAVSYIMHEVT 563 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~D--------sAv~~iM~~Vd 563 (630)
++++|-|-+..+..+|..+.. .+..-+|++.+ +.+.....+ ..|...|+.+.++.. ..+-..+..=+
T Consensus 68 ~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~--~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t 145 (404)
T PRK14012 68 EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSK--TEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDT 145 (404)
T ss_pred eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEec--CccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCC
Confidence 466665554444444433221 12333566643 333333333 456667998887742 12223333223
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++++-.+.-...|.+. .+ -.|+-+|+.|+++|+|
T Consensus 146 ~lv~~~~~~n~tG~~~-~~--~~I~~la~~~g~~viv 179 (404)
T PRK14012 146 ILVSIMHVNNEIGVIQ-DI--AAIGEICRERGIIFHV 179 (404)
T ss_pred EEEEEECcCCCccchh-hH--HHHHHHHHHcCCEEEE
Confidence 3333222222234333 22 4577788999998887
No 145
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=49.38 E-value=1.2e+02 Score=32.95 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=53.2
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh---------HHHHhc---
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA---------VSYIMH--- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---------v~~iM~--- 560 (630)
+.++|+|-|.+..+..++......|. .|++. .|.+.|...+ +...|+.+.++.... +...+.
T Consensus 91 ~~~i~it~G~~~al~~~~~~~~~~gd--~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 164 (391)
T PRK07309 91 ENEILVTIGATEALSASLTAILEPGD--KVLLP--APAYPGYEPI--VNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG 164 (391)
T ss_pred CCcEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHH--HHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC
Confidence 35688888888877666665443333 45554 3666665433 334688777664321 111221
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++- .---..|.+++.---..++-+|+.|++++++
T Consensus 165 ~~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 165 DKLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred CCeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 23444441 0000113333333345577778899988776
No 146
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=48.80 E-value=1.3e+02 Score=32.15 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=56.5
Q ss_pred ccCCCEEEeecChHHHHHHHHHH-HHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHh-ccccEEEEc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYA-HELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIM-HEVTRVFLG 568 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A-~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM-~~Vd~VivG 568 (630)
+...++++|.|.+..+..++... .+.|. .|+| + .|.+-+.... +...|..+..+.|- ..+- .+...|++
T Consensus 78 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~--~~l~~~~~~~v~~- 148 (357)
T TIGR03539 78 LDPTAVLPVIGTKELVAWLPTLLGLGPGD--TVVI-P-ELAYPTYEVG--ALLAGATPVAADDP--TELDPVGPDLIWL- 148 (357)
T ss_pred CCcCeEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcHHHHHH--HHhcCCEEeccCCh--hhcCccCccEEEE-
Confidence 55668899999888776665544 23332 4444 3 6777666544 33468777776431 1111 12333333
Q ss_pred ceeEecCCceecccchHH-------HHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTAC-------VAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~-------lAlaAk~~~VPV~V 600 (630)
+ ...|.+|+.. ++-+|++|++.+++
T Consensus 149 ------~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (357)
T TIGR03539 149 ------N-SPGNPTGRVLSVDELRAIVAWARERGAVVAS 180 (357)
T ss_pred ------e-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 2 3678888643 67778999998875
No 147
>PRK05764 aspartate aminotransferase; Provisional
Probab=48.68 E-value=1.9e+02 Score=30.95 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=51.3
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----------hHHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----------AVSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 560 (630)
+..+.+++|.|.+..+..++......|. +|++ ++ |.+.+..- .+...|+.+..+.-. .+...+.
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~-~~-p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMALLDPGD--EVII-PA-PYWVSYPE--MVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHHhcCCCC--EEEe-cC-CCCcchHH--HHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 3445678888777766666655544443 3444 33 55544322 234568877665421 2222222
Q ss_pred -cccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
++..|++- ..-|..|+. .|+-+|+.|++.++|
T Consensus 163 ~~~~~v~~~--------~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 163 PKTKALILN--------SPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred ccceEEEEE--------CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 23333331 134566654 466678899987776
No 148
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=48.65 E-value=42 Score=35.76 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=29.4
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEEeccccccccc
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHER 610 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r 610 (630)
..|--||-.++-.|- -|++|-+|||||+.++....++..
T Consensus 124 ~~v~iNG~~~gE~~l--Na~~Ag~~gVPV~lVsGDd~~~~e 162 (270)
T cd08769 124 YNIWINGKEMNETLI--NAAYAGEFGVPVVLVAGDSELEKE 162 (270)
T ss_pred EEEEECCEEcCHHHH--HHHHHhhcCCCEEEEecCHHHHHH
Confidence 445557766666654 679999999999999888777653
No 149
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=48.48 E-value=57 Score=34.96 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=62.8
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhcc--ccEEEEcceeEec
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHE--VTRVFLGASSVLS 574 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~--Vd~VivGAdaI~a 574 (630)
||..|.++-+-.-|..+.. ..+.|+.+..+.. -+.-...+..++.+ -|.||=-|--..-
T Consensus 3 iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~-----------------Ditd~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 3 ILITGANGQLGTELRRALP--GEFEVIATDRAEL-----------------DITDPDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred EEEEcCCChHHHHHHHHhC--CCceEEeccCccc-----------------cccChHHHHHHHHhhCCCEEEECcccccc
Confidence 7888888877766766543 5678887766541 11222234444442 2555544332222
Q ss_pred CC--------ceecccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 575 NG--------TTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 575 NG--------~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
|+ ..+|-.|+..+|.+|+++|.+++-+.--|=|+-.-
T Consensus 64 D~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~ 108 (281)
T COG1091 64 DKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEK 108 (281)
T ss_pred ccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCC
Confidence 22 24889999999999999999999999888887544
No 150
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=48.48 E-value=2.7e+02 Score=29.53 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=49.6
Q ss_pred CEEEeecC-hHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhcc---c
Q 006803 495 DVLLTYGS-SCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMHE---V 562 (630)
Q Consensus 495 dvILT~g~-S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~---V 562 (630)
++|+..++ |..+..++......| =+|+|.+ +..-|..+...+...|+++.+|... .+...+.. +
T Consensus 57 ~~i~~~~~gt~~l~~~~~~l~~~~--~~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~ 132 (368)
T PRK13479 57 TCVPLQGSGTFSVEAAIGSLVPRD--GKVLVPD--NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRI 132 (368)
T ss_pred eEEEEcCCcHHHHHHHHHhccCCC--CeEEEEe--CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCC
Confidence 44544444 444555555544333 2555554 3344555555566789988888542 12222221 1
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
..|+ -++.=...|.+. . ...++-+|+.++++++|=
T Consensus 133 ~~v~-~~~~~~~tG~~~-~--~~~i~~l~~~~~~~livD 167 (368)
T PRK13479 133 THVA-LVHCETTTGILN-P--LDEIAAVAKRHGKRLIVD 167 (368)
T ss_pred cEEE-EEcccCcccccc-C--HHHHHHHHHHcCCEEEEE
Confidence 2222 222112234332 2 357888889999866663
No 151
>PRK05968 hypothetical protein; Provisional
Probab=48.32 E-value=2.3e+02 Score=31.07 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=50.2
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH-HHHH-HHHHhCCCcEEEEcc---hhHHHHhccccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG-QALL-RRLLAKGLSCTYTHI---NAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~~La-~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivGA 569 (630)
..|++-+.+..+..+|....+.|. +|++.+ +.+.+ ..+. ..+...|+.++++.. ..+-..+.+..+|++-
T Consensus 80 ~av~~~sG~~Ai~~al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie- 154 (389)
T PRK05968 80 DARGFASGMAAISSTVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLE- 154 (389)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEE-
Confidence 455553333333333433333343 566654 34444 3333 456678999988743 2333334555566552
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
. ..|-+....=-..++-+|+.|+++|+|=
T Consensus 155 -~--pt~~~~~~~dl~~i~~la~~~gi~vivD 183 (389)
T PRK05968 155 -S--PTSWVFELQDVAALAALAKRHGVVTMID 183 (389)
T ss_pred -C--CCCCCCcHHHHHHHHHHHHHcCCEEEEE
Confidence 1 1222222222234677889999988873
No 152
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=48.23 E-value=28 Score=34.50 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=46.4
Q ss_pred HhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCC
Q 006803 488 ATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGL 545 (630)
Q Consensus 488 ~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI 545 (630)
.+.|++-|.|+-|+-+++.+.+|+. ||.+-|+|-|+-=.+.=.+||..|.+.|.
T Consensus 75 ~e~I~~AdlVIsHAGaGS~letL~l----~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 75 TEDIRSADLVISHAGAGSCLETLRL----GKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHHHhhccEEEecCCcchHHHHHHc----CCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 4566777889999999998888864 89999999999888888899999999995
No 153
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=48.15 E-value=2.1e+02 Score=31.51 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=48.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcchhHHHHhc----cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHINAVSYIMH----EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~DsAv~~iM~----~Vd~VivG 568 (630)
..|+|-+-+..+..+|......|. +|++.. |.+.+. .+. ..+...|+.+.++.......+.. +..+|++-
T Consensus 76 ~av~~~sG~~Ai~~~l~al~~~Gd--~Vi~~~--~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le 151 (391)
T TIGR01328 76 AAVATSSGMGAIAATLLTILKAGD--HLISDE--CLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFE 151 (391)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEec--CcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEE
Confidence 345544444444444433333343 566533 455443 233 44667899888886543333322 33333321
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.-.-..|.++. --.|+-+|+.+|++++|
T Consensus 152 -~p~Np~G~v~d---l~~I~~la~~~gi~liv 179 (391)
T TIGR01328 152 -TPANPTMKLID---MERVCRDAHSQGVKVIV 179 (391)
T ss_pred -CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 11112343332 23467778999998887
No 154
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=47.88 E-value=1.7e+02 Score=31.49 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=52.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---h-------hHHHHh-cccc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---N-------AVSYIM-HEVT 563 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---s-------Av~~iM-~~Vd 563 (630)
.+++|.|.+..+..++......|....|++. .|.+.+.... ....|+.+..+.. + .+-..+ .++.
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ 167 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcce
Confidence 4777888888777666655555544334443 5777766554 3346776666542 1 111111 2344
Q ss_pred EEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVL 599 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~ 599 (630)
.|++ + .--|.+|+ ..++-+|+.|++.++
T Consensus 168 ~i~l-------~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 168 LLFV-------C-SPGNPTGAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred EEEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence 4443 2 23567775 557777888887554
No 155
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=47.87 E-value=1.8e+02 Score=30.91 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=57.4
Q ss_pred CCEEEeecChHHHHHHHHHHH-HcCCceEEEEcCCCCCchHHHHH-HHHH-hCCCcEEEEcc--------hhHHHHh-cc
Q 006803 494 GDVLLTYGSSCVVEMILLYAH-ELGKQFRVVVVDSRPKHEGQALL-RRLL-AKGLSCTYTHI--------NAVSYIM-HE 561 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~-e~gk~f~ViV~ESRP~~eG~~La-~eL~-~~GI~vTlI~D--------sAv~~iM-~~ 561 (630)
.++++|.+.+..+..++.... .....-+|+++... +.|.... .++. ..|+++++|.. ..+...+ ++
T Consensus 62 ~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~ 139 (371)
T PF00266_consen 62 EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNE--HPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPD 139 (371)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESS--HHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTT
T ss_pred cccccccccchhhhhhhhcccccccccccccccccc--ccccccccccccccchhhhccccccccchhhhhhhhhhhccc
Confidence 456777666554445555441 12334466666553 3344433 4444 78999998864 2233333 35
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.++|++-. .-..+|. .+. .-.|+-+||++++.++|
T Consensus 140 ~~lv~~~~-~~~~tG~-~~p--i~~I~~~~~~~~~~~~v 174 (371)
T PF00266_consen 140 TRLVSISH-VENSTGV-RNP--IEEIAKLAHEYGALLVV 174 (371)
T ss_dssp ESEEEEES-BETTTTB-BSS--HHHHHHHHHHTTSEEEE
T ss_pred cceEEeec-ccccccE-Eee--eceehhhhhccCCceeE
Confidence 66665543 2234554 443 44577888999998887
No 156
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=47.47 E-value=1.4e+02 Score=30.75 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=55.8
Q ss_pred HHHhhccCCCEEEeecCh--HHHHHHHHHHHHcC-CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccc
Q 006803 486 HAATKVRDGDVLLTYGSS--CVVEMILLYAHELG-KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEV 562 (630)
Q Consensus 486 ~a~~~I~dgdvILT~g~S--~tV~~vL~~A~e~g-k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~V 562 (630)
.+..+|+||++|..=|+. +.-..++....++| +++++|-........| ...|...|. |
T Consensus 11 eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g---~~~L~~~G~----------------V 71 (222)
T TIGR02429 11 EAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIG---LAALLKAGQ----------------V 71 (222)
T ss_pred HHHhhCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCcc---HHHHHhCCC----------------E
Confidence 455689999999986653 44455565555566 5688887543221112 233444443 2
Q ss_pred cEEEEcc---------eeEecCCce---ecccchHHHHHHHHhCCCcEEEe
Q 006803 563 TRVFLGA---------SSVLSNGTT---YSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 563 d~VivGA---------daI~aNG~V---~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+++.|- -..+.+|.+ .-.-||+.-.+-|-..|+|++..
T Consensus 72 kr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 72 RKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred eEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 2332220 011112222 23678999999999999998864
No 157
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=47.17 E-value=5.5e+02 Score=30.36 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=50.3
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEcchhH--HHHhccccEEEE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTHINAV--SYIMHEVTRVFL 567 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~DsAv--~~iM~~Vd~Viv 567 (630)
.+...|+||+-..|+..|..-....+-=.|-+.-|-|-.+-..|...+.. ..|.+-++...|+ |.-+.-.+.|+.
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 35789999999999988887665544456778888888776666665543 3566666655444 444444555443
No 158
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=47.12 E-value=1.2e+02 Score=31.02 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH----------HHh-cc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS----------YIM-HE 561 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~----------~iM-~~ 561 (630)
...+++|.|-+..+..++..+...| -+|++.+ |.+.+.. ..+...|+.+.+|....-. ... ++
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~g--~~vl~~~--~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNPG--DEVLVPD--PTYPGYE--AAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCCC--CEEEEcC--CCchhHH--HHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc
Confidence 4467788777777766666654333 3455543 4444432 3344567776666543221 111 14
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+..|++-. .-...|.+..----..+.-+|+.+|++|+|=
T Consensus 133 ~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD 171 (350)
T cd00609 133 TKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISD 171 (350)
T ss_pred ceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEEEEe
Confidence 55555533 3333444433222223446789999998874
No 159
>PRK05939 hypothetical protein; Provisional
Probab=46.84 E-value=2.1e+02 Score=31.68 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=52.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHHHHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALLRRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 569 (630)
..|++-+-...+..+|......|. +|++.+ +.+-+. .+...|...|+.++++... .+-..+. +..+|++
T Consensus 64 ~~v~~ssG~~Ai~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~v-- 137 (397)
T PRK05939 64 GTVCFATGMAAIAAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFV-- 137 (397)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEE--
Confidence 455554444455555544444443 566654 444333 3345577789998888532 3333343 3444443
Q ss_pred eeEecCCceecccchH----HHHHHHHhCCCcEEE
Q 006803 570 SSVLSNGTTYSRVGTA----CVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~aNG~V~NKiGT~----~lAlaAk~~~VPV~V 600 (630)
+ .+.|..|.. .|+-+|+.++++++|
T Consensus 138 -----e-sp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 138 -----E-TIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred -----E-CCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 1 344555533 467788999988776
No 160
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=46.83 E-value=1.3e+02 Score=32.33 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=60.3
Q ss_pred HHHhhcc--CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhcccc
Q 006803 486 HAATKVR--DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVT 563 (630)
Q Consensus 486 ~a~~~I~--dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd 563 (630)
.+.+++. +-.+|..+|.......-++........-+|+|.+-.+ ..-..++.++.+.|++++...|.. .++.++|
T Consensus 118 laa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~-~~~~~~~~~~~~~g~~v~~~~~~~--eav~~aD 194 (325)
T TIGR02371 118 VAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTP-STREKFALRASDYEVPVRAATDPR--EAVEGCD 194 (325)
T ss_pred HHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCH-HHHHHHHHHHHhhCCcEEEeCCHH--HHhccCC
Confidence 3445553 3467888887776665443332222223466664433 334566777777888877765433 4558999
Q ss_pred EEEEcc---e-----eEecCCceecccchHH
Q 006803 564 RVFLGA---S-----SVLSNGTTYSRVGTAC 586 (630)
Q Consensus 564 ~VivGA---d-----aI~aNG~V~NKiGT~~ 586 (630)
.|+... + ..+.-|..+|-||++.
T Consensus 195 iVitaT~s~~P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 195 ILVTTTPSRKPVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred EEEEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 999755 2 2457899999999763
No 161
>PRK08462 biotin carboxylase; Validated
Probab=46.80 E-value=41 Score=37.27 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=48.2
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCc--hHHHHHHHHHhCCCc---EEEEcchhHHHHhc--cccEEEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKH--EGQALLRRLLAKGLS---CTYTHINAVSYIMH--EVTRVFL 567 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~--eG~~La~eL~~~GI~---vTlI~DsAv~~iM~--~Vd~Viv 567 (630)
..||..+.+.....+++.|.+.| ++|+++.+.+.. .+..++-+....|-. -.|+...++-.+.. ++|.|+-
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G--~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMG--KEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC--CCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 47999999999999999999987 456666555543 455554222111111 13332233444433 6899999
Q ss_pred cceeEecCC
Q 006803 568 GASSVLSNG 576 (630)
Q Consensus 568 GAdaI~aNG 576 (630)
|.+-+..|.
T Consensus 83 g~g~lse~~ 91 (445)
T PRK08462 83 GYGFLSENQ 91 (445)
T ss_pred CCCccccCH
Confidence 876544443
No 162
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=46.55 E-value=18 Score=37.67 Aligned_cols=41 Identities=15% Similarity=0.343 Sum_probs=22.6
Q ss_pred HhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 558 IMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 558 iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
+-.++|.+++..|..+.+ . + ..+...+.+++||+|...+.+
T Consensus 181 l~~~~da~~~~~~~~~~~-----~-~-~~i~~~~~~~~iPv~~~~~~~ 221 (294)
T PF04392_consen 181 LAEKVDALYLLPDNLVDS-----N-F-EAILQLANEAKIPVFGSSDFY 221 (294)
T ss_dssp HCTT-SEEEE-S-HHHHH-----T-H-HHHHHHCCCTT--EEESSHHH
T ss_pred hhccCCEEEEECCcchHh-----H-H-HHHHHHHHhcCCCEEECCHHH
Confidence 344688888877654422 1 2 226678889999999875443
No 163
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=46.37 E-value=3.4e+02 Score=28.69 Aligned_cols=101 Identities=16% Similarity=0.207 Sum_probs=53.4
Q ss_pred CEEEeecChHHHHHHHHHHHHc-CCceEEEEcCCCCCchHHHH-HHHHH-hCCCcEEEEcch--------hHHHHhc-cc
Q 006803 495 DVLLTYGSSCVVEMILLYAHEL-GKQFRVVVVDSRPKHEGQAL-LRRLL-AKGLSCTYTHIN--------AVSYIMH-EV 562 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~-gk~f~ViV~ESRP~~eG~~L-a~eL~-~~GI~vTlI~Ds--------Av~~iM~-~V 562 (630)
.+++|-|.+..+..++..+... ++.-+|++.+ +.+-+... ...+. ..|+.+.+|... .+-..+. ++
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 140 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERT 140 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc
Confidence 5667777666666666555431 1334566655 33333222 23333 678888877422 1222222 44
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
++|++. +.--..|.+.. + -.|+-+|+.|+++++|=
T Consensus 141 ~~v~~~-~~~~~tG~~~~-~--~~i~~~~~~~~~~li~D 175 (373)
T cd06453 141 KLVAVT-HVSNVLGTINP-V--KEIGEIAHEAGVPVLVD 175 (373)
T ss_pred eEEEEe-CcccccCCcCC-H--HHHHHHHHHcCCEEEEE
Confidence 555442 22223444433 2 36788889999988874
No 164
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=46.31 E-value=2.5e+02 Score=29.18 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=49.9
Q ss_pred CEE-EeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------------hhHHHHh
Q 006803 495 DVL-LTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------------NAVSYIM 559 (630)
Q Consensus 495 dvI-LT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------------sAv~~iM 559 (630)
.++ +|-|.+..+..+|..+...| -+|++. ||.+....-+ +...|+.+.++.- ..+-..+
T Consensus 76 ~~~~~~~Gst~a~~~~l~al~~~g--d~Vlv~--~~~h~s~~~~--~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l 149 (294)
T cd00615 76 HTFFLVNGTSSSNKAVILAVCGPG--DKILID--RNCHKSVING--LVLSGAVPVYLKPERNPYYGIAGGIPPETFKKAL 149 (294)
T ss_pred CEEEEcCcHHHHHHHHHHHcCCCC--CEEEEe--CCchHHHHHH--HHHCCCEEEEecCccCcccCcCCCCCHHHHHHHH
Confidence 344 46554444555554443333 355554 3444433222 3335666665521 1233333
Q ss_pred c---cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 560 H---EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 560 ~---~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
. ++..|++... ...|.++. --.|+-+|+.|+++++|=
T Consensus 150 ~~~~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~livD 189 (294)
T cd00615 150 IEHPDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLVD 189 (294)
T ss_pred HhCCCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEEE
Confidence 2 3556666432 23565554 346888899999998874
No 165
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=46.26 E-value=2e+02 Score=29.97 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=49.6
Q ss_pred CEEEeecChHH---HHHHHHHHHHcCCceE--EEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-hhHHHHhccccEEEEc
Q 006803 495 DVLLTYGSSCV---VEMILLYAHELGKQFR--VVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-NAVSYIMHEVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~t---V~~vL~~A~e~gk~f~--ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sAv~~iM~~Vd~VivG 568 (630)
.+++|+|-+.. ...+|....+....++ |++=...|.. .++-...... -++.+... +-+..+|..+|+||..
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~--~~l~~~~~~~-~~i~~~~~~~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNL--DELKKFAKEY-PNIILFIDVENMAELMNEADLAIGA 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCH--HHHHHHHHhC-CCEEEEeCHHHHHHHHHHCCEEEEC
Confidence 46788885552 3455554444344444 4443444543 2332222222 24554444 4578889999999763
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
-|+ ...=+-..++|+++++.
T Consensus 249 -------------~G~--T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 249 -------------AGS--TSWERCCLGLPSLAICL 268 (279)
T ss_pred -------------Cch--HHHHHHHcCCCEEEEEe
Confidence 231 23334457899998854
No 166
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=46.04 E-value=1.7e+02 Score=33.73 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=65.2
Q ss_pred HHHHhhccCCCEEEeecCh--HH----HHHHHHHHHH---cC--CceEEEEcCC-CCC------chH----------HHH
Q 006803 485 RHAATKVRDGDVLLTYGSS--CV----VEMILLYAHE---LG--KQFRVVVVDS-RPK------HEG----------QAL 536 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S--~t----V~~vL~~A~e---~g--k~f~ViV~ES-RP~------~eG----------~~L 536 (630)
+.|+.+|++|++|..-+++ +. +..+.+++.+ .| ++++++..-+ .+. ..| ...
T Consensus 6 eEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp~ 85 (485)
T TIGR03458 6 DEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDPT 85 (485)
T ss_pred HHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCHH
Confidence 4567799999999887653 32 2233333322 12 3455554211 111 111 112
Q ss_pred HHHHHhCC-CcEEEEcchhHHHHhc-----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 537 LRRLLAKG-LSCTYTHINAVSYIMH-----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 537 a~eL~~~G-I~vTlI~DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+++.+.| +.++-+.-+.+..++. ++|.+|+=+...-.+|.+.=-..+.....+++.-. -|||
T Consensus 86 ~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~aAk-~VIv 154 (485)
T TIGR03458 86 LRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLELAD-KVIV 154 (485)
T ss_pred HHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHhCC-EEEE
Confidence 36666666 4555555677777764 58999999999999998865555444444444433 3444
No 167
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=46.01 E-value=2e+02 Score=30.44 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=55.6
Q ss_pred ccCC-CEEEeecChHHHHHHHHHHHHcCC-ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-h---------HHHH
Q 006803 491 VRDG-DVLLTYGSSCVVEMILLYAHELGK-QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-A---------VSYI 558 (630)
Q Consensus 491 I~dg-dvILT~g~S~tV~~vL~~A~e~gk-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-A---------v~~i 558 (630)
+..+ .+|+|.|.+..+..++......|. .-.|++. .|.+.+...+. ...|+.+..+... . +-..
T Consensus 57 ~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~--~p~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 132 (350)
T TIGR03537 57 LDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFG--TPGYPVYERGA--LFAGGEPTAVKLKKEDGFLLRLEKVEKS 132 (350)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEc--CCCCcchHHHH--HhcCCEEEEcccCcccCCccCHHHHHHh
Confidence 3344 789999988877766655444332 1244444 47777665543 3478777766432 1 1112
Q ss_pred hc-cccEEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 559 MH-EVTRVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 559 M~-~Vd~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
+. +...|++ + ..-|..|+ ..++-+|+.|++.+++
T Consensus 133 ~~~~~~~i~i-------~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 133 ILEETKIVWI-------N-YPHNPTGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred hhhccEEEEE-------e-CCCCCcCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 22 2222222 2 24588884 4466678889987765
No 168
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=45.89 E-value=2.3e+02 Score=31.18 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=52.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH-HHHH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG-QALL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~~La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
++++|-+-+..+..+|......| -+|++. .|.+.+ ..++ ..+...||+++++.. ..+...+. +..+|++-
T Consensus 67 ~~~~~~sG~~Ai~~al~all~~G--D~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~le 142 (377)
T TIGR01324 67 GCYLYPSGLAAVTNSILAFVKAG--DHVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLE 142 (377)
T ss_pred cEEEECcHHHHHHHHHHHhcCCC--CEEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 56666555555555555443334 356665 345544 3444 346778999887732 34444444 34444431
Q ss_pred ceeEecCCceecccchH----HHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTA----CVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~----~lAlaAk~~~VPV~V 600 (630)
...|..|.. .|+-+|+.+++.++|
T Consensus 143 --------sp~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 143 --------APSSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 233445533 367788999988876
No 169
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=45.78 E-value=2.2e+02 Score=29.53 Aligned_cols=93 Identities=10% Similarity=0.042 Sum_probs=43.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---hHHHHhccc----cEEEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---AVSYIMHEV----TRVFL 567 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~~V----d~Viv 567 (630)
+.|++.+.+..+..+|..+...| -.|++. .|.+...... +...|+++..+... .+-..+..- .++|+
T Consensus 78 ~~i~~~~G~~~~~~~l~~~~~~g--d~v~~~--~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 78 AALLFSSGYLANVGVISALVGKG--DLILSD--ALNHASLIDG--CRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred CEEEECchHHHHHHHHHHhCCCC--CEEEEE--ccccHHHHHH--HHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEE
Confidence 34444433444444444433323 244443 3554443333 33457777666422 233333321 23333
Q ss_pred cceeEecCCceecccc----hHHHHHHHHhCCCcEEE
Q 006803 568 GASSVLSNGTTYSRVG----TACVAMVAHAFRVPVLI 600 (630)
Q Consensus 568 GAdaI~aNG~V~NKiG----T~~lAlaAk~~~VPV~V 600 (630)
-+.+.|..| -..|+-+|+.|++.+++
T Consensus 152 -------~~~~~~~~G~~~~~~~i~~l~~~~~~~li~ 181 (360)
T TIGR00858 152 -------TDGVFSMDGDIAPLPQLVALAERYGAWLMV 181 (360)
T ss_pred -------EeCCccCCCCCcCHHHHHHHHHHcCcEEEE
Confidence 122334444 34567788889987765
No 170
>PRK08175 aminotransferase; Validated
Probab=45.72 E-value=54 Score=35.49 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=51.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-chh------HHHHhc----ccc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-INA------VSYIMH----EVT 563 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA------v~~iM~----~Vd 563 (630)
.+|+|.|.+..+..++....+.|. +|++. +|.+.+.....+ ..|+.+.++. |.. +-..+. ++.
T Consensus 93 ~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~ 166 (395)
T PRK08175 93 EAIVTIGSKEGLAHLMLATLDHGD--TVLVP--NPSYPIHIYGAV--IAGAQVRSVPLVEGVDFFNELERAIRESYPKPK 166 (395)
T ss_pred cEEEccCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHHH--HcCCeEEEEecccCCCcHHHHHHHHhhccCCce
Confidence 588898887766555554444443 44444 566665544433 4677777663 211 122222 233
Q ss_pred EEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
.|++ + ..-|.+|+ ..++-+|++|++.+++
T Consensus 167 ~v~i-------~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 167 MMIL-------G-FPSNPTAQCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred EEEE-------e-CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 3333 2 23466664 5777789999997665
No 171
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=45.67 E-value=2.5e+02 Score=30.94 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=49.3
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH-HHHHHHH-HhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG-QALLRRL-LAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~~La~eL-~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
++|+|.|-+..+..+|....+.| -+|++.+ |.+.| ..+...+ ...|+.++++.. ..+...+. +..+|++-
T Consensus 69 ~~i~~~sg~~Ai~~~l~~l~~~G--D~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~ 144 (386)
T PRK08045 69 GAVLTNTGMSAIHLVTTVFLKPG--DLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEE
Confidence 45666555555555554433333 3566554 66665 4444444 345677777631 22333332 45555552
Q ss_pred ceeEecCCceecccch----HHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGT----ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT----~~lAlaAk~~~VPV~V 600 (630)
..-|..|+ ..++-+|+.++++++|
T Consensus 145 --------sP~NPtG~v~di~~I~~ia~~~g~~viv 172 (386)
T PRK08045 145 --------SPSNPLLRVVDIAKICHLAREAGAVSVV 172 (386)
T ss_pred --------CCCCCCCEecCHHHHHHHHHHcCCEEEE
Confidence 23344443 3577778889987765
No 172
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.58 E-value=1.3e+02 Score=34.18 Aligned_cols=91 Identities=26% Similarity=0.271 Sum_probs=54.1
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcce
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd 570 (630)
+..|..|+.+|...+=+..++.++..| .+|++.|.++. + ...|.+.|+.+....+ . ...+..+|.||+..
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~----~-~~~l~~~g~~~~~~~~-~-~~~l~~~D~VV~Sp- 78 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPD----A-LRPHAERGVATVSTSD-A-VQQIADYALVVTSP- 78 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHH----H-HHHHHhCCCEEEcCcc-h-HhHhhcCCEEEECC-
Confidence 345778888876665455555555556 57888997653 1 3346777885532222 1 22346678776643
Q ss_pred eEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 571 aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
| +-- +..+-..|+..+|||+-
T Consensus 79 -----G-i~~---~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 79 -----G-FRP---TAPVLAAAAAAGVPIWG 99 (488)
T ss_pred -----C-CCC---CCHHHHHHHHCCCcEee
Confidence 2 111 34566777888888884
No 173
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=45.52 E-value=2.4e+02 Score=31.10 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=39.2
Q ss_pred EEEEcCCCCCchHHHHH--HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhC
Q 006803 521 RVVVVDSRPKHEGQALL--RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF 594 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~ 594 (630)
+|++.+ |.+.|.... ..+...|+.++.+... .+...+. +..+|++ ..-.-..|.++. --.|+-+|+++
T Consensus 106 ~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~l-esp~NptG~v~d---l~~I~~la~~~ 179 (398)
T PRK07504 106 HVVAAR--ALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFL-ESPTNPTLEVID---IAAVAKIANQA 179 (398)
T ss_pred EEEEcC--CchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEE-ECCCCCCcEecC---HHHHHHHHHHc
Confidence 566643 566665443 2345678888877422 2323332 3334433 222222344443 35677778889
Q ss_pred CCcEEE
Q 006803 595 RVPVLI 600 (630)
Q Consensus 595 ~VPV~V 600 (630)
|++|+|
T Consensus 180 gi~lvv 185 (398)
T PRK07504 180 GAKLVV 185 (398)
T ss_pred CCEEEE
Confidence 988776
No 174
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=45.32 E-value=14 Score=40.99 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=32.1
Q ss_pred HHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccc
Q 006803 555 VSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHE 609 (630)
Q Consensus 555 v~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~ 609 (630)
+-..|..+|+||.|--++- .-++ .--....||-+|+.|+|||+++|.....+.
T Consensus 278 l~~~l~~aDlVITGEG~~D-~Qtl-~GK~p~~Va~~A~~~~vPviav~G~~~~~~ 330 (377)
T PF02595_consen 278 LEERLEDADLVITGEGRLD-AQTL-AGKVPGGVARLAKKHGVPVIAVAGSVDLDA 330 (377)
T ss_dssp HHHHCCC-SEEEE--CECS-TTTT-TTCHHHHHHCCHCCTT--EEEEECEC-TT-
T ss_pred HHHHhcCCCEEEECccccc-cccC-CCcHHHHHHHHHHHcCCcEEEEeCCCCCCh
Confidence 4556778999999975532 2222 223456678889999999999999866543
No 175
>PRK07324 transaminase; Validated
Probab=45.30 E-value=1.7e+02 Score=31.61 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=56.3
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 560 (630)
+....+|+|.|.+..+..++......|. +|++. .|.+.+.. ..+...|+.+..+.. ..+...+.
T Consensus 78 ~~~~~vi~t~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 151 (373)
T PRK07324 78 VKPENILQTNGATGANFLVLYALVEPGD--HVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENGWLPDLDELRRLVR 151 (373)
T ss_pred CChhhEEEcCChHHHHHHHHHHhCCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhCC
Confidence 3445688888888876666655444443 45553 46665443 233456777766642 12222232
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++- .-=-..|.++++.--..|+-+|++|++.+++
T Consensus 152 ~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 152 PNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444332 2222335555544456677778999986654
No 176
>PRK13566 anthranilate synthase; Provisional
Probab=45.22 E-value=76 Score=38.24 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=49.9
Q ss_pred cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHh--ccccEEEE-cceeEecCCceecccchHHHHHHHH
Q 006803 516 LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIM--HEVTRVFL-GASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 516 ~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM--~~Vd~Viv-GAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
.|+..+|.|+|-...+ -..|++.|.+.|+.|+++.......++ .++|.||| |-- |+ .+..+...+--.|.
T Consensus 523 ~~~g~~IlvID~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGp-----gs-p~d~~~~~lI~~a~ 595 (720)
T PRK13566 523 VGEGKRVLLVDHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGP-----GR-PSDFDCKATIDAAL 595 (720)
T ss_pred CCCCCEEEEEECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCC-----CC-hhhCCcHHHHHHHH
Confidence 4566788888877544 345778999999999998765432332 25788776 211 11 12234444444555
Q ss_pred hCCCcEEEec
Q 006803 593 AFRVPVLICC 602 (630)
Q Consensus 593 ~~~VPV~V~a 602 (630)
..++||+=+|
T Consensus 596 ~~~iPILGIC 605 (720)
T PRK13566 596 ARNLPIFGVC 605 (720)
T ss_pred HCCCcEEEEe
Confidence 6799999665
No 177
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=44.97 E-value=1.6e+02 Score=31.54 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=69.2
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEec
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLS 574 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~a 574 (630)
|..+..=....|..+|+++.+.|.+.-||+.+.-+..+.++|.....+.|| .++=-|.++.+-........-......
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gi--rvlGPNc~Gi~~~~~~~~~~~~~~~~~ 144 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKT--RLIGPNCPGIITPGECKIGIMPGHIHK 144 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCCcccccccceeeecCCCCCC
Confidence 556666667788999999999998888999888776556777777777776 345455555544433322221222233
Q ss_pred CC--ceecccchHHHHHH--HHhCCCcEE
Q 006803 575 NG--TTYSRVGTACVAMV--AHAFRVPVL 599 (630)
Q Consensus 575 NG--~V~NKiGT~~lAla--Ak~~~VPV~ 599 (630)
-| ++++..|++..+++ ++..++-|-
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s 173 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQS 173 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 45 57899999888876 667777664
No 178
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=44.51 E-value=4.4e+02 Score=28.49 Aligned_cols=134 Identities=12% Similarity=0.077 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCEEEeecChHHHHHHHHHHHHcCCceEEEEcC-CCCCchHH
Q 006803 458 TEAKAALCNDIDRFINEKIILADKVIVRHAATKVRD--GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVD-SRPKHEGQ 534 (630)
Q Consensus 458 ~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~d--gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~E-SRP~~eG~ 534 (630)
.+.++...+.++.|--. ....+.+-+..+++..- ..+++|-|.+.....++......| -+|++.. .+|.+-..
T Consensus 36 ~~~~~~~~~~~~~~~g~--~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~g--d~Vli~~~d~p~~~s~ 111 (346)
T TIGR03576 36 FKIDEEDLELLETYVGP--AIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPG--RKVVHYLPEKPAHPSI 111 (346)
T ss_pred hhHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCC--CEEEECCCCCCCchhH
Confidence 45666666777666100 01122333444455532 455555555555555555443333 4566542 35554332
Q ss_pred HHHHHHHhCCCcEEEEcchhHHHHhccccEEEE-cceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 535 ALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL-GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 535 ~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv-GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.-. ..-.|..+....|-.--....+..+|++ |. .-+|+++.+.=-..++-+|+.|++.|+|
T Consensus 112 ~~~--~~l~ga~~~~~~~l~~l~~~~~~~lIiitg~---s~~G~v~~~~~L~~i~~la~~~~~~liv 173 (346)
T TIGR03576 112 PRS--CKLAGAEYFESDELSELKKIDGTSLVVITGS---TMDLKVVSEEDLKRVIKQAKSKEAIVLV 173 (346)
T ss_pred HHH--HHHcCCEEeccCCHHHHhhCcCceEEEEECC---CCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 222 2224555433322111001123344554 21 2345565544444566678889987775
No 179
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=44.43 E-value=63 Score=29.54 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=50.6
Q ss_pred EEEeecChHHHHHHHHHHHHcCC-ceEEEEcCCCCCchHHHHHHHHHhCCCcEEE--Ecc-hhHHHHhc--cccEEEEcc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGK-QFRVVVVDSRPKHEGQALLRRLLAKGLSCTY--THI-NAVSYIMH--EVTRVFLGA 569 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl--I~D-sAv~~iM~--~Vd~VivGA 569 (630)
.||.+|+.+- +..|..+..+.. .-+|||.-..|.... .+ .+.- +.| ..+..+.. ++|+||+|-
T Consensus 2 kVLviGsGgR-EHAia~~l~~s~~v~~v~~aPGN~G~~~---------~~-~~~~~~~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 2 KVLVIGSGGR-EHAIAWKLSQSPSVEEVYVAPGNPGTAE---------LG-KNVPIDITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp EEEEEESSHH-HHHHHHHHTTCTTEEEEEEEE--TTGGG---------TS-EEE-S-TT-HHHHHHHHHHTTESEEEESS
T ss_pred EEEEECCCHH-HHHHHHHHhcCCCCCEEEEeCCCHHHHh---------hc-eecCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 5888887754 555655555444 458999887665421 11 1111 111 23333333 699999999
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEE
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~ 599 (630)
+.-+.+| ++=.-+..|||++
T Consensus 71 E~pL~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 71 EAPLVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp HHHHHTT----------HHHHHHHTT-CEE
T ss_pred hHHHHHH----------HHHHHHHCCCcEE
Confidence 9999999 7777777888875
No 180
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=44.09 E-value=3.3e+02 Score=27.95 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=34.1
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 522 VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 522 ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
+++.-++-..+-..+++...+.|+++..||+ .-+.+.+.+|.+|.-
T Consensus 180 I~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 180 VLISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTL 225 (284)
T ss_pred EEEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEec
Confidence 3333444455666777899999999999997 456777789998863
No 181
>PRK07503 methionine gamma-lyase; Provisional
Probab=44.06 E-value=2.6e+02 Score=30.90 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=50.6
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGA 569 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 569 (630)
.|++-+-+..+..+|......| -+|++. .|.+.+. .+. ..+...|+.++.+... .+-..+. +..+|++ .
T Consensus 83 ~i~~~sG~~Al~~~l~~ll~~G--d~Viv~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~l-e 157 (403)
T PRK07503 83 AVALASGMGAITATLWTLLRPG--DEVIVD--QTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYF-E 157 (403)
T ss_pred EEEEcCHHHHHHHHHHHHcCCC--CEEEEc--cCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEE-e
Confidence 4555443334344444333334 356664 3555332 222 4566789998887532 3333333 4445544 2
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.-.-..|.+.. --.|+-+|+.||++++|=
T Consensus 158 ~p~NPtG~~~d---i~~I~~la~~~gi~lIvD 186 (403)
T PRK07503 158 TPANPNMRLVD---IAAVAEIAHGAGAKVVVD 186 (403)
T ss_pred CCCCCCCeeeC---HHHHHHHHHHcCCEEEEE
Confidence 22223344433 246777889999988873
No 182
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=43.92 E-value=37 Score=36.70 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=47.3
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-hhHHHHhc--cccEEEEcce
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-NAVSYIMH--EVTRVFLGAS 570 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sAv~~iM~--~Vd~VivGAd 570 (630)
..+||..|.+.....++..|.+. .++|++++..|...|..++... +.+-+ .| .++..+.. .+|.|+.+.+
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~--G~~v~~~~~~~~~~~~~~ad~~----~~~~~-~d~~~l~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHRS----HVIDM-LDGDALRAVIEREKPDYIVPEIE 84 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCchHHhhhhe----EECCC-CCHHHHHHHHHHhCCCEEEEeeC
Confidence 35899999887777777777664 5788999999987777654321 10101 23 34444555 6899988876
Q ss_pred eE
Q 006803 571 SV 572 (630)
Q Consensus 571 aI 572 (630)
.+
T Consensus 85 ~~ 86 (395)
T PRK09288 85 AI 86 (395)
T ss_pred cC
Confidence 54
No 183
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.89 E-value=85 Score=27.99 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=49.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhccccEEEEcceeE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~~Vd~VivGAdaI 572 (630)
..||+.|.++.--.++.. .|-..+.+.|+++++..-+. +.....+.|.||+|.+--
T Consensus 4 ~~ILl~C~~G~sSS~l~~----------------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~ 61 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVN----------------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA 61 (95)
T ss_pred cEEEEECCCchhHHHHHH----------------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH
Confidence 468888888865554432 14466778899887776544 444667889999887543
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+. .. .+--.+..+|+||.++-
T Consensus 62 ~~-------~~--~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 62 YM-------LP--DLKKETDKKGIPVEVIN 82 (95)
T ss_pred HH-------HH--HHHHHhhhcCCCEEEeC
Confidence 31 11 23344667899999874
No 184
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=43.48 E-value=1.2e+02 Score=33.43 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=41.9
Q ss_pred HHHHHhCCCcEEEEcc--------hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHh----CCCcEEEecc
Q 006803 537 LRRLLAKGLSCTYTHI--------NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA----FRVPVLICCE 603 (630)
Q Consensus 537 a~eL~~~GI~vTlI~D--------sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~----~~VPV~V~ae 603 (630)
+..|.+.||+|++|.. ..+-...++.+.|| ++.++....-.|....+.++.. ...|+..++-
T Consensus 247 a~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vv-----tvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~ 320 (356)
T PLN02683 247 AEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLV-----TVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAG 320 (356)
T ss_pred HHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEE-----EEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEecc
Confidence 4556667777777753 23444555666764 5667777777899999999887 3678887654
No 185
>PRK07683 aminotransferase A; Validated
Probab=43.31 E-value=2.6e+02 Score=30.22 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=51.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh---------HHHHhccccEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA---------VSYIMHEVTRV 565 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---------v~~iM~~Vd~V 565 (630)
++++|.|.+..+..++....+.|. +|++. .|.+.+...+. ...|+++.++.... +...+..-+++
T Consensus 91 ~I~~t~G~~~al~~~~~~l~~~gd--~Vl~~--~p~y~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTILEPGT--EVILP--APIYPGYEPII--RLCGAKPVFIDTRSTGFRLTAEALENAITEKTRC 164 (387)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCC--EEEEc--CCCccchHHHH--HHcCCEEEEeecCcccCCCCHHHHHHhcCcCceE
Confidence 788898888776666555444443 45553 56666654443 34688887775322 22222221222
Q ss_pred EEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 566 FLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
++ +. ..-|.+|+ ..++-+|+.+++.+++
T Consensus 165 i~-----i~--~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 165 VV-----LP--YPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred EE-----Ee--CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 21 11 23466666 4567788889987664
No 186
>PLN02242 methionine gamma-lyase
Probab=43.18 E-value=2e+02 Score=32.02 Aligned_cols=99 Identities=24% Similarity=0.210 Sum_probs=48.6
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHh-CCCcEEEEcc---hhHHHHhcc-ccEEEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLA-KGLSCTYTHI---NAVSYIMHE-VTRVFL 567 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~-~GI~vTlI~D---sAv~~iM~~-Vd~Viv 567 (630)
..++|-+-+..+..+|....+.|. +|++.+ |.+.+. .+. ..+.+ .|+.++++.. ..+-..+.. -+++|+
T Consensus 93 ~~l~~~sG~~Ai~~al~al~~~GD--~Vl~~~--~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~ 168 (418)
T PLN02242 93 AAYCTASGMSAISSVLLQLCSSGG--HVVASN--TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLY 168 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEcC--CcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEE
Confidence 345554444444444444444443 555554 555544 333 23334 7888877642 234444443 133333
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
-..---..|.++. --.|+-+|+.|+++++|
T Consensus 169 lesp~NPtG~v~d---l~~I~~la~~~gi~liv 198 (418)
T PLN02242 169 FESISNPTLTVAD---IPELARIAHEKGVTVVV 198 (418)
T ss_pred EecCCCCCCcccC---HHHHHHHHHHhCCEEEE
Confidence 2211112333332 13567788999998876
No 187
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=42.86 E-value=83 Score=30.22 Aligned_cols=6 Identities=0% Similarity=-0.545 Sum_probs=2.7
Q ss_pred EEEEcc
Q 006803 547 CTYTHI 552 (630)
Q Consensus 547 vTlI~D 552 (630)
..++.|
T Consensus 92 ~v~~~D 97 (191)
T cd06436 92 IIAVID 97 (191)
T ss_pred EEEEEC
Confidence 444444
No 188
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=42.57 E-value=35 Score=35.70 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=59.0
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc--cccEEEEcceeE-
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH--EVTRVFLGASSV- 572 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaI- 572 (630)
.||..|.++.+-..|..+.++ +.+.|+.+ +|+.+.-. ...++..++. +.|.||--|--.
T Consensus 2 riLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~~dl~----------------d~~~~~~~~~~~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKE-RGYEVIAT-SRSDLDLT----------------DPEAVAKLLEAFKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTCS-TT----------------SHHHHHHHHHHH--SEEEE------
T ss_pred EEEEECCCCHHHHHHHHHHhh-CCCEEEEe-CchhcCCC----------------CHHHHHHHHHHhCCCeEeccceeec
Confidence 689999999988888877654 56788887 55532110 1123333333 245555443110
Q ss_pred ----ecC---CceecccchHHHHHHHHhCCCcEEEeccccccccc
Q 006803 573 ----LSN---GTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHER 610 (630)
Q Consensus 573 ----~aN---G~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r 610 (630)
-.| -..+|-.|+..+|-+|+.++++++-+.-.+=|+-.
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~ 108 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGD 108 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SS
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCC
Confidence 011 23467899999999999999999999888877654
No 189
>PRK05967 cystathionine beta-lyase; Provisional
Probab=42.56 E-value=2.5e+02 Score=31.27 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=56.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
+.|+|.+-+..+..++....+.|. +|++. .|.+.|.. +. ..|...||.++++.. ..+...+. +..+|++-
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~le 156 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTE 156 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 467777755555555555544444 66666 45666654 34 457778999999853 23555554 44444443
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
. .. | -+....=-..|+-+|+.++++|+|
T Consensus 157 s--Ps-N-P~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 157 A--PG-S-NTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred C--CC-C-CCCcHHHHHHHHHHHHHhCCEEEE
Confidence 2 11 1 122222234677888999987776
No 190
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=42.53 E-value=41 Score=30.73 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCcEEEEcc--hhHHHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 534 QALLRRLLAKGLSCTYTHI--NAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 534 ~~La~eL~~~GI~vTlI~D--sAv~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
++|..+|.+.|..+..+.. -+...+.. .+..||+..| +.-..-..-..-.+-.+.+++||+++.++.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 3566888889999888865 44555554 6889999887 111111112222344556899999999854
No 191
>PRK10116 universal stress protein UspC; Provisional
Probab=42.51 E-value=2.6e+02 Score=25.19 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=25.9
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+|+||+|.+.--. ..+.+. ...-+.++-++||+|+
T Consensus 102 ~~DLiV~g~~~~~~----~~~~~s-~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 102 HFDLVICGNHNHSF----FSRASC-SAKRVIASSEVDVLLV 137 (142)
T ss_pred CCCEEEEcCCcchH----HHHHHH-HHHHHHhcCCCCEEEE
Confidence 69999999985422 333442 2456788899999997
No 192
>PRK06108 aspartate aminotransferase; Provisional
Probab=42.33 E-value=2.6e+02 Score=29.64 Aligned_cols=96 Identities=10% Similarity=0.081 Sum_probs=51.2
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-----------hHHHHh
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-----------AVSYIM 559 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-----------Av~~iM 559 (630)
+....+++|.|.+..+..++....+.| -+|++. .|.+.+.. ..+...|+.+..+... .+-..+
T Consensus 82 ~~~~~i~~t~g~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 155 (382)
T PRK06108 82 TPPERIAVTSSGVQALMLAAQALVGPG--DEVVAV--TPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI 155 (382)
T ss_pred cCcceEEEeCChHHHHHHHHHHhcCCC--CEEEEe--CCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence 344567788877776555555443333 345553 35554433 2344578887766431 122222
Q ss_pred c-cccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 560 H-EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 560 ~-~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
. ++.+|++ + ..-|..|+. .|+-+|++|++.+++
T Consensus 156 ~~~~~~i~l-------~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 156 TPRTRALFI-------N-SPNNPTGWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CccceEEEE-------E-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 2 2333333 2 234677754 366778889987664
No 193
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=42.14 E-value=1.2e+02 Score=33.06 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEE--------------EEcc--hhHHHHhccccEEEEcceeEecCCceec
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCT--------------YTHI--NAVSYIMHEVTRVFLGASSVLSNGTTYS 580 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vT--------------lI~D--sAv~~iM~~Vd~VivGAdaI~aNG~V~N 580 (630)
..+++++++-..|.. ...+...+.+.|+... ++.| .-+..++..+|.+++|..- ...|
T Consensus 260 ~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~-~e~~---- 333 (425)
T PRK05749 260 FPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL-VKRG---- 333 (425)
T ss_pred CCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc-CCCC----
Confidence 456777777544432 2345566777788532 2233 4577788899998886532 2222
Q ss_pred ccchHHHHHHHHhCCCcEEEec
Q 006803 581 RVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 581 KiGT~~lAlaAk~~~VPV~V~a 602 (630)
|. ..+=|-.+|+||++.-
T Consensus 334 --g~--~~lEAma~G~PVI~g~ 351 (425)
T PRK05749 334 --GH--NPLEPAAFGVPVISGP 351 (425)
T ss_pred --CC--CHHHHHHhCCCEEECC
Confidence 22 1366777899999843
No 194
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=42.13 E-value=32 Score=35.76 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhccCCCEE-EeecChHHHHHHHHHHHHcCCce----EEEEcCCCCCchHHHHHHHHHhC-CCcEEE---
Q 006803 479 ADKVIVRHAATKVRDGDVL-LTYGSSCVVEMILLYAHELGKQF----RVVVVDSRPKHEGQALLRRLLAK-GLSCTY--- 549 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvI-LT~g~S~tV~~vL~~A~e~gk~f----~ViV~ESRP~~eG~~La~eL~~~-GI~vTl--- 549 (630)
.++.|+..+++.|+||+.| |=+|--+.|-.++.+-.+ ..| -++-+..-|.. |.. -..|... +-++|.
T Consensus 7 ~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~~~~--~~~~seng~Lg~g~~p~~-~~~-d~~linaG~~~vt~~pg 82 (225)
T COG2057 7 EREMIAKRAARELKDGDYVNLGIGLPTLVANYAPEGMN--VLLQSENGLLGVGPAPLP-GEE-DADLINAGKQPVTALPG 82 (225)
T ss_pred hHHHHHHHHHHhccCCCEEEecCCchHHhHhhcccccc--eEEecCceeEEecCCCCC-CCC-CcchhhCCCceeEecCC
Confidence 4567788888889998754 667766666555553110 011 12223333332 111 1233444 456666
Q ss_pred --EcchhHHHHhc---cccEEEEcceeEecCCceeccc----------chHHHHHHHHhCCCcEEEeccc
Q 006803 550 --THINAVSYIMH---EVTRVFLGASSVLSNGTTYSRV----------GTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 550 --I~DsAv~~iM~---~Vd~VivGAdaI~aNG~V~NKi----------GT~~lAlaAk~~~VPV~V~aet 604 (630)
+.|++.++.|- ++|.-||||--|-.+|++.|-+ |+.-|+.-||. |||.-+.
T Consensus 83 ~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~gakk----vii~m~H 148 (225)
T COG2057 83 ASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGAKK----VIVVMEH 148 (225)
T ss_pred ceEEchHHHHHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCCcE----EEEEeee
Confidence 56787777665 7999999999999999999965 55555554443 5665443
No 195
>PRK07050 cystathionine beta-lyase; Provisional
Probab=42.05 E-value=3.4e+02 Score=29.95 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=49.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcc---hhHHHHhccccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHI---NAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivGA 569 (630)
.+++|-|-+..+..+|....+ ..-+|++.+ |.+.+.. +. ..+...|+.++++.. ..+...+..=+++|+-.
T Consensus 82 ~~l~~~sgt~Ai~~~l~al~~--~GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le 157 (394)
T PRK07050 82 HALLQPSGLAAISLVYFGLVK--AGDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLE 157 (394)
T ss_pred eEEEeccHHHHHHHHHHHHhC--CCCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 345554444444444433333 334666654 4454433 33 345667998888742 33444454323333211
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
. .+.-+....=-..|+-+|+.++++|+|
T Consensus 158 -~--p~Np~~~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 158 -A--PGSVTMEVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred -C--CCCCCccHhhHHHHHHHHHHcCCEEEE
Confidence 0 111112222234567788999998776
No 196
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=42.05 E-value=55 Score=36.91 Aligned_cols=80 Identities=10% Similarity=0.043 Sum_probs=46.7
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCC--CcEEEEcchhHHHHhc--cccEEEEccee
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKG--LSCTYTHINAVSYIMH--EVTRVFLGASS 571 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~G--I~vTlI~DsAv~~iM~--~Vd~VivGAda 571 (630)
.||..+++.....+++.|++.|...-++..+..+...+.+++.+....| ..-.|+....+-.+.+ ++|.|+-|..-
T Consensus 4 kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~ 83 (472)
T PRK07178 4 KILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGF 83 (472)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCC
Confidence 6899999999999999999987554444444433334555542211111 1112333334444443 68888887644
Q ss_pred EecC
Q 006803 572 VLSN 575 (630)
Q Consensus 572 I~aN 575 (630)
+..|
T Consensus 84 lse~ 87 (472)
T PRK07178 84 LSEN 87 (472)
T ss_pred cccC
Confidence 4444
No 197
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=42.01 E-value=3.2e+02 Score=26.24 Aligned_cols=44 Identities=7% Similarity=-0.095 Sum_probs=33.7
Q ss_pred CCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 526 DSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 526 ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
-|.-..+=..+++.+.+.|+++..||++.-+.+-+.+|.+|.-.
T Consensus 110 ~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 110 TSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 34444455666788999999999999988888877888887643
No 198
>PRK05414 urocanate hydratase; Provisional
Probab=41.80 E-value=1.3e+02 Score=35.02 Aligned_cols=89 Identities=21% Similarity=0.323 Sum_probs=62.6
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHH
Q 006803 411 TLVRDLTAKISSYVSFLIECRPLSMS-MGNAIRFQKSRIAKL--------------------PLTLSETEAKAALCNDID 469 (630)
Q Consensus 411 ~~~rdL~~~L~~~i~~L~~aRPtsVs-LgNAIrrlk~~I~~~--------------------~~~~s~~eaKe~L~e~Id 469 (630)
....+|.+.|...-+...+-+|.|+. +||+.+-+...++.. +...+.+|+.+...+.-+
T Consensus 214 ~~~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr~~dp~ 293 (556)
T PRK05414 214 EKADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELRAEDPE 293 (556)
T ss_pred eEcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHHHhCHH
Confidence 34456777777777778888999996 799988777666542 123567888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH---hhccCCCEEEeecCh
Q 006803 470 RFINEKIILADKVIVRHAA---TKVRDGDVLLTYGSS 503 (630)
Q Consensus 470 ~fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~S 503 (630)
.|.+. +.+.+..|.. ++-..|..+.-|||+
T Consensus 294 ~~~~~----~~~Sm~rhv~Am~~~~~~G~~~fDYGN~ 326 (556)
T PRK05414 294 EFVKA----AKASMARHVEAMLAFQARGAYVFDYGNN 326 (556)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 77643 4555555543 444578888888876
No 199
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=41.28 E-value=1.4e+02 Score=29.93 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=45.5
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEE-cCCCCCchHHHHHHHHHhCCCcEEEEc----------chhHHHHhc--cc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVV-VDSRPKHEGQALLRRLLAKGLSCTYTH----------INAVSYIMH--EV 562 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV-~ESRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~V 562 (630)
.||.-|+++....+|....+.+....|.+ +-.+|..++. ....+.||++.++. |..+...+. .+
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~---~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL---ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHH---HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 46666777777777776655454555443 3455655443 44566799998755 223444454 68
Q ss_pred cEEEE-cceeEe
Q 006803 563 TRVFL-GASSVL 573 (630)
Q Consensus 563 d~Viv-GAdaI~ 573 (630)
|.+|+ |-..|+
T Consensus 81 D~iv~~~~~~il 92 (190)
T TIGR00639 81 DLVVLAGFMRIL 92 (190)
T ss_pred CEEEEeCcchhC
Confidence 98877 444544
No 200
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=41.28 E-value=2.9e+02 Score=26.84 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=64.8
Q ss_pred CCEEEeecChH--------HHHHHHHHHHHcCCceEEEEcCCCCC------------chHHHHHHHHHhCCCcEEEEcch
Q 006803 494 GDVLLTYGSSC--------VVEMILLYAHELGKQFRVVVVDSRPK------------HEGQALLRRLLAKGLSCTYTHIN 553 (630)
Q Consensus 494 gdvILT~g~S~--------tV~~vL~~A~e~gk~f~ViV~ESRP~------------~eG~~La~eL~~~GI~vTlI~Ds 553 (630)
..+++|+|+=. .+..++..|.+.+..--|+.-+..|. ..-.+=.+.|.+.||+..++.|=
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F 84 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPF 84 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-C
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 35677877433 55667777777776777777787772 22334457789999999888751
Q ss_pred --h---------HHHHhc---cccEEEEcceeEecCCceecccch-HHHHHHHHhCCCcEEEec
Q 006803 554 --A---------VSYIMH---EVTRVFLGASSVLSNGTTYSRVGT-ACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 554 --A---------v~~iM~---~Vd~VivGAdaI~aNG~V~NKiGT-~~lAlaAk~~~VPV~V~a 602 (630)
. +-.++. .+..+++|.|-=+-. ++.|+ ..|.-.++.+++.|+++-
T Consensus 85 ~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~----~~~G~~~~L~~~~~~~g~~v~~v~ 144 (157)
T PF06574_consen 85 TEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGK----NRSGDVELLKELGKEYGFEVEVVP 144 (157)
T ss_dssp CCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESG----GGEEEHHHHHHCTTTT-SEEEEE-
T ss_pred hHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCC----CCCCCHHHHHHhcccCceEEEEEC
Confidence 1 122233 588999999988855 34444 455666777899999873
No 201
>PRK06225 aspartate aminotransferase; Provisional
Probab=41.26 E-value=2.5e+02 Score=30.10 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=52.0
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-ch----------hHHHHhc
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-IN----------AVSYIMH 560 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-Ds----------Av~~iM~ 560 (630)
...++++|.|.+..+..++......|. +|++.+ |.+.... ..+...|..+..+. +. .+...+.
T Consensus 82 ~~~~v~~~~g~t~al~~~~~~~~~~gd--~vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~ 155 (380)
T PRK06225 82 DDDEALITAGATESLYLVMRAFLSPGD--NAVTPD--PGYLIID--NFASRFGAEVIEVPIYSEECNYKLTPELVKENMD 155 (380)
T ss_pred CCCcEEEeCCHHHHHHHHHHHhcCCCC--EEEEcC--CCCcchH--HHHHHhCceEEeeccccccCCccCCHHHHHhhcC
Confidence 445788998888776666665433342 455554 5543322 33455777777664 21 1111112
Q ss_pred -cccEEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEEe
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V~ 601 (630)
++..|++ + ...|..|+ ..++-+|++||+++++=
T Consensus 156 ~~~~~v~l-------~-~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~D 196 (380)
T PRK06225 156 ENTRLIYL-------I-DPLNPLGSSYTEEEIKEFAEIARDNDAFLLHD 196 (380)
T ss_pred CCceEEEE-------e-CCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEe
Confidence 2222221 1 12456665 34667789999988873
No 202
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=41.20 E-value=4.3e+02 Score=27.44 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=52.1
Q ss_pred CCEEEeecChHHHHHHHHHHHH------------cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-c-------h
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE------------LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-I-------N 553 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e------------~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D-------s 553 (630)
...|.|.|-+......|..+.. .+....|++.+ +.+.....+ +...|+.+..+. | .
T Consensus 58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~h~~~~~~--~~~~g~~~~~v~~~~~~~~d~~ 133 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD--QAHVSVEKA--AAYLDVKVRLVPVDEDGRMDPE 133 (345)
T ss_pred CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC--cchhHHHHH--HHHHhcCeEEeeeCCCCCcCHH
Confidence 4688888777765544444322 11233444444 333222222 222377777764 2 1
Q ss_pred hHHHHhcc------ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 554 AVSYIMHE------VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 554 Av~~iM~~------Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+-..+.+ -.++++....-...|.+.. -..++-+|+.|+++++|=
T Consensus 134 ~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD 184 (345)
T cd06450 134 ALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLHVD 184 (345)
T ss_pred HHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEEEe
Confidence 22333333 3344544444444555422 356788899999988873
No 203
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=41.20 E-value=96 Score=35.24 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 006803 193 ERRAMQEAQRAAKAAT 208 (630)
Q Consensus 193 eRr~l~~~q~~ak~~~ 208 (630)
|.++++.+.+++|...
T Consensus 328 ~~~~~~~~~~~~~~~~ 343 (429)
T PRK00247 328 ENAEIKKTRTAEKNEA 343 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 204
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=40.96 E-value=3.1e+02 Score=28.21 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEe-ecChHHHHHHHHH-HHHcCCceEEEEcC--------CCCC---
Q 006803 464 LCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLT-YGSSCVVEMILLY-AHELGKQFRVVVVD--------SRPK--- 530 (630)
Q Consensus 464 L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT-~g~S~tV~~vL~~-A~e~gk~f~ViV~E--------SRP~--- 530 (630)
+.+..+.+.+|++..+++.|.+. .|.++.+ .|+|+.|-+-|-. ... -.+.+|++- ....
T Consensus 16 l~~~~~~~~~~~~~~a~~~i~~~------~gkv~V~G~GkSG~Igkk~Aa~L~s--~G~~a~fv~p~ea~hgdlg~i~~~ 87 (202)
T COG0794 16 LLELAERLDDEDFVRAVELILEC------KGKVFVTGVGKSGLIGKKFAARLAS--TGTPAFFVGPAEALHGDLGMITPG 87 (202)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc------CCcEEEEcCChhHHHHHHHHHHHHc--cCCceEEecCchhccCCccCCCCC
Confidence 33444444445566667666654 4444444 7899977544432 222 335555553 1111
Q ss_pred ---------chHH---HHHHHHHhCCCcEEEEcchhHHHHhccccEEEE
Q 006803 531 ---------HEGQ---ALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL 567 (630)
Q Consensus 531 ---------~eG~---~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 567 (630)
.|-. .++..+.+.|+++.-||-+-=+.+-+..|.||.
T Consensus 88 DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ 136 (202)
T COG0794 88 DVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLV 136 (202)
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEE
Confidence 1222 334788899999999987666666666788876
No 205
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=40.91 E-value=2.7e+02 Score=32.76 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=34.5
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEE
Q 006803 522 VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL 567 (630)
Q Consensus 522 ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 567 (630)
+++.-++-..+-.++++.+.+.|+++..||++ -+.+.+.+|.+|.
T Consensus 520 I~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~ 564 (638)
T PRK14101 520 VAVSKSGRAPELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALE 564 (638)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence 33444555566677789999999999999995 5777778998874
No 206
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=40.63 E-value=2.2e+02 Score=31.71 Aligned_cols=109 Identities=19% Similarity=0.128 Sum_probs=67.3
Q ss_pred CCEEEeecChH-HHHHHHHHHHHcCCceEEEEcCCCCCch--HHHHHHHHHhCCCcEEEE-cc----hhHHHHhccccEE
Q 006803 494 GDVLLTYGSSC-VVEMILLYAHELGKQFRVVVVDSRPKHE--GQALLRRLLAKGLSCTYT-HI----NAVSYIMHEVTRV 565 (630)
Q Consensus 494 gdvILT~g~S~-tV~~vL~~A~e~gk~f~ViV~ESRP~~e--G~~La~eL~~~GI~vTlI-~D----sAv~~iM~~Vd~V 565 (630)
+.++|..|-|+ ..+.++....+.+...+|+++|-.|... ..+.... ..-.++++ .| +.+......+ .|
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~---~~~~v~~~~~D~~~~~~i~~a~~~~-~V 79 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF---RSGRVTVILGDLLDANSISNAFQGA-VV 79 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc---cCCceeEEecchhhhhhhhhhccCc-eE
Confidence 56778888777 5567777777777789999999888631 1111111 23345555 22 3333344455 33
Q ss_pred EEcc----eeEecCC----ceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 566 FLGA----SSVLSNG----TTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 566 ivGA----daI~aNG----~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
+.-| +.+..|. .-+|-.||..+--.|+..||+++|-..+.-
T Consensus 80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~ 128 (361)
T KOG1430|consen 80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAY 128 (361)
T ss_pred EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCce
Confidence 3322 2222221 236889999999999999999999766543
No 207
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=40.60 E-value=1.4e+02 Score=34.60 Aligned_cols=88 Identities=17% Similarity=0.320 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHHH
Q 006803 412 LVRDLTAKISSYVSFLIECRPLSMS-MGNAIRFQKSRIAKL--------------------PLTLSETEAKAALCNDIDR 470 (630)
Q Consensus 412 ~~rdL~~~L~~~i~~L~~aRPtsVs-LgNAIrrlk~~I~~~--------------------~~~~s~~eaKe~L~e~Id~ 470 (630)
...+|.+.|...-+...+-+|.|+. +||+.+-+...++.. +...+.+|+.+...+.-+.
T Consensus 206 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~~ 285 (545)
T TIGR01228 206 QTDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPEA 285 (545)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 4456777777777778888999996 799988777666541 1234678888888888888
Q ss_pred HHHHHHHHHHHHHHHHHH---hhccCCCEEEeecCh
Q 006803 471 FINEKIILADKVIVRHAA---TKVRDGDVLLTYGSS 503 (630)
Q Consensus 471 fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~S 503 (630)
|.+. +.+.+..|.. ++-..|..+.-|||+
T Consensus 286 ~~~~----~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~ 317 (545)
T TIGR01228 286 YVKA----AKQSMAKHVRAMLAFQKQGSVTFDYGNN 317 (545)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 7643 4555665543 444578888888886
No 208
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=40.34 E-value=42 Score=35.65 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=27.3
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
+.|--||-.++-.| .-|++|-+|||||+.++..-.+|...
T Consensus 124 ~~v~iNG~~~gE~~--lna~~Ag~~GVPV~lVsGD~~l~~ea 163 (265)
T PF04951_consen 124 HEVRINGREVGEFG--LNAALAGYYGVPVVLVSGDDALCEEA 163 (265)
T ss_dssp EEEEETTEEE-HHH--HHHHHHHHTT--EEEEEEEHHHHHHH
T ss_pred eeEEECCEEcchhH--HHHHHHhhcCCcEEEEeCcHHHHHHH
Confidence 34555776666555 46899999999999998887777544
No 209
>PRK07049 methionine gamma-lyase; Validated
Probab=40.33 E-value=3.4e+02 Score=30.34 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=33.1
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH--HHHHhCCCcEEEEcc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL--RRLLAKGLSCTYTHI 552 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~D 552 (630)
.++|+|-|-+..+..+|....+.|. +|++. .|.+.|.... ..|...|+.+..+.|
T Consensus 99 ~~~iv~~sG~~Ai~~~l~al~~~Gd--~Vv~~--~p~Y~~~~~~~~~~l~~~Gi~~v~~~~ 155 (427)
T PRK07049 99 ESAALFSSGMSAIATTLLAFVRPGD--VILHS--QPLYGGTETLLAKTFRNFGVGAVGFAD 155 (427)
T ss_pred CcEEEEccHHHHHHHHHHHHhCCCC--EEEEc--CCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence 3677776666655555555555554 45554 3777666543 446778998555544
No 210
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=40.30 E-value=4.7e+02 Score=29.17 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcC-CceEEEEc-CCCCCchHHHHHHHHHhCCCcE--E---EEcch----hHHHHhc-
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELG-KQFRVVVV-DSRPKHEGQALLRRLLAKGLSC--T---YTHIN----AVSYIMH- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~g-k~f~ViV~-ESRP~~eG~~La~eL~~~GI~v--T---lI~Ds----Av~~iM~- 560 (630)
.|..++.++....+..++..+.+.| -..-+..+ -..+..++....+++.+.|+.. . ++.|+ .+..+++
T Consensus 292 ~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 371 (426)
T cd01972 292 KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKR 371 (426)
T ss_pred CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcccccccceeeecCCCHHHHHHHHHH
Confidence 5888888887777777777777888 55443322 2344455443445666767642 2 55555 3444444
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+.|.+|.+. +- .. ...|+..++|++-+
T Consensus 372 ~~pDl~i~~~-------~~------~~-~~~~~~~gip~~~~ 399 (426)
T cd01972 372 VKPDFIIFRH-------GG------LF-PDATVYLGIPVVPL 399 (426)
T ss_pred hCCCEEEEcC-------CC------cc-HHHHHhcCCCEEec
Confidence 467665432 11 11 12346799999866
No 211
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=40.14 E-value=3.9e+02 Score=28.30 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=49.9
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhcc-cc-EE
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMHE-VT-RV 565 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~-Vd-~V 565 (630)
+++|-+-|..+..++......|. +|+|+.. ..-|.++.......|+++.++.. ..+...+.. .+ ++
T Consensus 57 i~~t~~~t~al~~~~~~l~~~~~--~vlv~~~--~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 132 (363)
T TIGR02326 57 VLLQGSGTFAVEAVIGSAVPKDG--KLLVVIN--GAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITH 132 (363)
T ss_pred EEEcCCCHHHHHHHHHhcCCCCC--eEEEEeC--ChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccE
Confidence 44554545555555544433332 3444331 22244444445667988887753 233344432 11 23
Q ss_pred EEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+.-++.=...|.+ +.+ ..|+-+|+.|+++++|
T Consensus 133 v~~~~~~~~tG~~-~~i--~~I~~l~~~~g~~liv 164 (363)
T TIGR02326 133 IALVHCETTTGIL-NPI--EAVAKLAHRHGKVTIV 164 (363)
T ss_pred EEEEeecCCcccc-CcH--HHHHHHHHHcCCEEEE
Confidence 3333333334544 333 5688889999987766
No 212
>PRK06836 aspartate aminotransferase; Provisional
Probab=40.14 E-value=3.4e+02 Score=29.43 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=32.2
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 551 (630)
+....+|+|.|.+..+..++......| -.|++.+ |.+.+... .+...|+++.++.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vli~~--p~~~~~~~--~~~~~g~~v~~v~ 148 (394)
T PRK06836 94 LTADHIVMTCGAAGALNVALKAILNPG--DEVIVFA--PYFVEYRF--YVDNHGGKLVVVP 148 (394)
T ss_pred CCcCcEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHHH--HHHHcCCEEEEEe
Confidence 445567778777665555554433333 3555544 77666433 3456788887774
No 213
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=39.94 E-value=1.2e+02 Score=31.46 Aligned_cols=87 Identities=17% Similarity=0.085 Sum_probs=49.4
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceE-EEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEec
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFR-VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLS 574 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~-ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~a 574 (630)
.|..+|.++.+-..+..+..+...++ |.+++..+...... ...|+.+ .. .+..++..+|.|+.-+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----~~~~i~~--~~--dl~~ll~~~DvVid~t----- 68 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----GALGVAI--TD--DLEAVLADADVLIDFT----- 68 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----CCCCccc--cC--CHHHhccCCCEEEECC-----
Confidence 57788875544333334333334566 44566655432211 2334432 22 2334455677665433
Q ss_pred CCceecccchHHHHHHHHhCCCcEEEe
Q 006803 575 NGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 575 NG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+.-..+.++..|-.+++||++.
T Consensus 69 -----~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 69 -----TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -----CHHHHHHHHHHHHHcCCCEEEE
Confidence 5666788999999999999965
No 214
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=39.78 E-value=1.1e+02 Score=27.92 Aligned_cols=76 Identities=8% Similarity=-0.018 Sum_probs=45.6
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--chhHHHHhc--cccEEEEccee
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--INAVSYIMH--EVTRVFLGASS 571 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--DsAv~~iM~--~Vd~VivGAda 571 (630)
.||..|.+|.-..++..- +-..+.+.|+++.+.. .+.+...+. ..|.|++|.+.
T Consensus 3 kILlvCg~G~STSlla~k----------------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi 60 (104)
T PRK09590 3 KALIICAAGMSSSMMAKK----------------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQT 60 (104)
T ss_pred EEEEECCCchHHHHHHHH----------------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHH
Confidence 588888877654444331 3345667888877643 344444333 58999988765
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
-+.-. .+--.+..+||||.++-
T Consensus 61 ~~~~~---------~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 61 KMYFK---------QFEEAGAKVGKPVVQIP 82 (104)
T ss_pred HHHHH---------HHHHHhhhcCCCEEEeC
Confidence 43111 12334556899999873
No 215
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=39.68 E-value=50 Score=36.91 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=46.3
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc--cccEEEEcceeE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH--EVTRVFLGASSV 572 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaI 572 (630)
..||.+|..+-=..+...+++.+..-.||+ -|.+.|....... ..+++.+....++..+.+ ++|.||+|.+..
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~---~pgn~g~~~~~~~--~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~ 79 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKV---FPGNGGFPDDELL--PADSFSILDKSSVQSFLKSNPFDLIVVGPEDP 79 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEE---ECCchHHhccccc--cccCcCcCCHHHHHHHHHHcCCCEEEECCchH
Confidence 579999999876666666666666667887 4555554221101 112222223345555555 499999998776
Q ss_pred ecCC
Q 006803 573 LSNG 576 (630)
Q Consensus 573 ~aNG 576 (630)
+..|
T Consensus 80 l~~g 83 (426)
T PRK13789 80 LVAG 83 (426)
T ss_pred HHHH
Confidence 6554
No 216
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=39.63 E-value=86 Score=25.73 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCc-eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc
Q 006803 508 MILLYAHELGKQ-FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH 560 (630)
Q Consensus 508 ~vL~~A~e~gk~-f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~ 560 (630)
..+.+|.+.+.. .+||+.+..-...-..+...+.+.||++.++.+.-+..+-.
T Consensus 6 ~~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~ 59 (76)
T PF08032_consen 6 HAVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLSD 59 (76)
T ss_dssp HHHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCTT
T ss_pred HHHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHcC
Confidence 345566666654 45888888333334577888889999999999887766643
No 217
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=39.59 E-value=2.1e+02 Score=29.01 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=67.6
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcC------C---CCCc-----hH----HHHHHHHHhCC
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVD------S---RPKH-----EG----QALLRRLLAKG 544 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~E------S---RP~~-----eG----~~La~eL~~~G 544 (630)
++..+.++|. +..|+..|..++--.++......|.. +++++| + |-.+ -| ..+++.|.+..
T Consensus 11 ~g~~~q~~L~-~~~VlivG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 11 IGEEGQEKLK-NARVLVVGAGGLGSPAAEYLAAAGVG-KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred cCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 4455555665 57899999999888888887777864 222222 1 1111 12 22335666653
Q ss_pred --CcEEEEcc----hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 545 --LSCTYTHI----NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 545 --I~vTlI~D----sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+.++.+.. .....++..+|.||...|..- .-..+.-.|+.+++|++.+
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSG 142 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 55555442 234456778999988877542 2356788899999999875
No 218
>PRK05957 aspartate aminotransferase; Provisional
Probab=39.56 E-value=3.1e+02 Score=29.65 Aligned_cols=93 Identities=11% Similarity=0.162 Sum_probs=52.7
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhc-cccE
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMH-EVTR 564 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-~Vd~ 564 (630)
.++++|.|.+..+..++....+.|. +|++. .|.+.+.... +...|+.+.++... .+-..+. ++..
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~kl 163 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAITDPGD--EIILN--TPYYFNHEMA--ITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRA 163 (389)
T ss_pred CeEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcCHHHH--HHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceE
Confidence 4577888877766555554444442 45553 4776555443 34578888776432 1222222 3334
Q ss_pred EEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
|++- | .-|..|+. .++-+|+.||+.+++
T Consensus 164 v~~~------~--p~NPtG~~~~~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 164 IVTI------S--PNNPTGVVYPEALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred EEEe------C--CCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 4321 2 35777754 367778999987775
No 219
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=39.56 E-value=41 Score=35.20 Aligned_cols=41 Identities=12% Similarity=-0.032 Sum_probs=31.5
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL 537 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La 537 (630)
+||..|.+... .+++.+++.|..++||+++..|...|..++
T Consensus 3 ~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~ 43 (326)
T PRK12767 3 NILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFA 43 (326)
T ss_pred eEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhc
Confidence 57777666555 778888877778999999999988776654
No 220
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=39.47 E-value=2.3e+02 Score=28.60 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=55.9
Q ss_pred CCCEEEeecChH------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH----HHHHhCCC--cEEEE----cchhHH
Q 006803 493 DGDVLLTYGSSC------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALL----RRLLAKGL--SCTYT----HINAVS 556 (630)
Q Consensus 493 dgdvILT~g~S~------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La----~eL~~~GI--~vTlI----~DsAv~ 556 (630)
+..+|+..|+-. .+...+....+++..++++++-..+... .... ..+.+.|+ .++++ .+.-+.
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~ 262 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDL-ERYRGEAYALAERLGLADRVIFINRYLPDEELP 262 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccch-hhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHH
Confidence 445677777443 3444455555566778877775433211 1111 11344454 34543 356788
Q ss_pred HHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 557 YIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 557 ~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+|..+|.+++-... .+ -|.....+=|-.+|+||++.
T Consensus 263 ~~~~~ad~~v~ps~~--e~------~~~~~~~~Ea~a~G~PvI~~ 299 (366)
T cd03822 263 ELFSAADVVVLPYRS--AD------QTQSGVLAYAIGFGKPVIST 299 (366)
T ss_pred HHHhhcCEEEecccc--cc------cccchHHHHHHHcCCCEEec
Confidence 899999998875321 11 12223345577889999874
No 221
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=39.45 E-value=6.2e+02 Score=28.75 Aligned_cols=143 Identities=8% Similarity=0.116 Sum_probs=77.1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHH
Q 006803 433 LSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLY 512 (630)
Q Consensus 433 tsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~ 512 (630)
+-+.+.+.-++|+...+-...... +. +++|+. ...+.+.+....++ .|..+..+|.+..+.++-.-
T Consensus 258 ~P~G~~~T~~~l~~ia~~~g~~~~-----e~-------i~~er~-~~~~~~~~~~~~~l-~Gkrv~i~g~~~~~~~l~~f 323 (454)
T cd01973 258 TPIGIKNTDAFLQNIKELTGKPIP-----ES-------LVRERG-IAIDALADLAHMFF-ANKKVAIFGHPDLVIGLAEF 323 (454)
T ss_pred CCcChHHHHHHHHHHHHHHCCCCC-----HH-------HHHHHH-HHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHH
Confidence 346777887777765443321111 11 122211 12233333333333 48888888988877777666
Q ss_pred HHHcCCceEEEEcCC-CCCchHHHHHHHHH-hCCCcEEEEcchhHHHH---hcc----ccEEEEcceeEecCCceecccc
Q 006803 513 AHELGKQFRVVVVDS-RPKHEGQALLRRLL-AKGLSCTYTHINAVSYI---MHE----VTRVFLGASSVLSNGTTYSRVG 583 (630)
Q Consensus 513 A~e~gk~f~ViV~ES-RP~~eG~~La~eL~-~~GI~vTlI~DsAv~~i---M~~----Vd~VivGAdaI~aNG~V~NKiG 583 (630)
+.+.|-...++++-+ .+..+.....++|. ..+..+.++.+.-..-+ +.+ +|++| .|
T Consensus 324 l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dlii-------g~-------- 388 (454)
T cd01973 324 CLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLIL-------GH-------- 388 (454)
T ss_pred HHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEEE-------EC--------
Confidence 667888876655554 45555655555663 23444444544333333 221 45443 22
Q ss_pred hHHHHHHHHhCCCcEEEe-cccc
Q 006803 584 TACVAMVAHAFRVPVLIC-CEAY 605 (630)
Q Consensus 584 T~~lAlaAk~~~VPV~V~-aet~ 605 (630)
..---+|+..+||++.+ .|.|
T Consensus 389 -s~~~~~A~~~gip~~~~g~Pv~ 410 (454)
T cd01973 389 -SKGRYIAIDNNIPMVRVGFPTF 410 (454)
T ss_pred -CccHHHHHHcCCCEEEecCCee
Confidence 22346788899999876 3444
No 222
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=39.40 E-value=1.1e+02 Score=27.08 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=35.0
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--hhHHHHhccccEEEEcce
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--NAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--sAv~~iM~~Vd~VivGAd 570 (630)
.||+.|.++.....+... .+-..|.+.||++++..- +.+...+..+|.||.+.+
T Consensus 4 kILvvCgsG~~TS~m~~~---------------------ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 4 KIIVACGGAVATSTMAAE---------------------EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred eEEEECCCchhHHHHHHH---------------------HHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCc
Confidence 589999998776666432 133566778888776653 223334467888887764
No 223
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=39.29 E-value=2.2e+02 Score=29.56 Aligned_cols=96 Identities=7% Similarity=-0.030 Sum_probs=65.4
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|..||..|-..++..=+....+.|-.++||-.+-.|..+ .|.+.| .++++.-.--...+..+++||...|-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~------~l~~~~-~i~~~~r~~~~~dl~g~~LViaATdD- 95 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL------DLKKYG-NLKLIKGNYDKEFIKDKHLIVIATDD- 95 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH------HHHhCC-CEEEEeCCCChHHhCCCcEEEECCCC-
Confidence 4678999999999887777777778888998777655543 234443 25555543333345677888777652
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
+.=.-.++-.|++++++|.++...
T Consensus 96 --------~~vN~~I~~~a~~~~~lvn~vd~p 119 (223)
T PRK05562 96 --------EKLNNKIRKHCDRLYKLYIDCSDY 119 (223)
T ss_pred --------HHHHHHHHHHHHHcCCeEEEcCCc
Confidence 222356888999999999988653
No 224
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=39.23 E-value=2.8e+02 Score=27.71 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=66.6
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC---CCch-----------H----HHHHHHHHhC-
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR---PKHE-----------G----QALLRRLLAK- 543 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR---P~~e-----------G----~~La~eL~~~- 543 (630)
++..+.++|. +..||..|..++-..++..+...|-. +++++|.. +.+- | ..+++.|.+.
T Consensus 11 ~g~~~q~kl~-~~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 11 IGEEGQQRLL-NSHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred cCHHHHHHhc-CCCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 4445555664 57889999998877888887777753 34444322 1111 1 1223556554
Q ss_pred -CCcEEEEcc----hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 544 -GLSCTYTHI----NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 544 -GI~vTlI~D----sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.+.++.+.. ..+..++.++|.||...|.+- --+.+.-.|+.+++||+.+.
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 355554432 234456788999888766532 22457788999999998764
No 225
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=39.11 E-value=6.6e+02 Score=28.99 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=57.9
Q ss_pred CCCEEEeecChHHHHHHHHHHH-HcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-hHHHHhc--cccEEEEc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAH-ELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-AVSYIMH--EVTRVFLG 568 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~-e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-Av~~iM~--~Vd~VivG 568 (630)
.|..++.++....+..+.+-+. +.|-.. +.+-+.-......+...|...+..+.+..|. .+...+. +.|+|
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~v--v~~gt~~~~~~~~~~~~~~~~~~~~~i~~D~~el~~~i~~~~Pdli--- 366 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEV--VGAGTYLREDARWVRAAAKEYGDEALITDDYLEVEDAIAEAAPELV--- 366 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeE--EEEecCCcchhHHHHHHHHhcCCCeEEecCHHHHHHHHHhcCCCEE---
Confidence 5778899998877777766666 567554 4443322233445556777777666665663 3333333 35555
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+|+..-..+|+..|||+++++
T Consensus 367 -------------iG~~~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 367 -------------LGTQMERHSAKRLGIPCAVIS 387 (519)
T ss_pred -------------EEcchHHHHHHHcCCCEEEec
Confidence 245566679999999998775
No 226
>PRK08618 ornithine cyclodeaminase; Validated
Probab=39.09 E-value=2.3e+02 Score=30.38 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=58.0
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEcchhHHHHhccccEEEEcc--
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTHINAVSYIMHEVTRVFLGA-- 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~~Vd~VivGA-- 569 (630)
+..+|+.+|........+.........-+|+|..-.| .....++.+|.+ .|+++....| .-.++.++|.|+...
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~-~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTF-EKAYAFAQEIQSKFNTEIYVVNS--ADEAIEEADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCH-HHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcCCEEEEccCC
Confidence 5678999999988777665443322223455554433 346677777764 4777666544 234457899988742
Q ss_pred -e----eEecCCceecccchHH
Q 006803 570 -S----SVLSNGTTYSRVGTAC 586 (630)
Q Consensus 570 -d----aI~aNG~V~NKiGT~~ 586 (630)
+ ..+..|..++-+|++.
T Consensus 203 ~~p~i~~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 203 KTPVFSEKLKKGVHINAVGSFM 224 (325)
T ss_pred CCcchHHhcCCCcEEEecCCCC
Confidence 1 4557888899898863
No 227
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=38.84 E-value=62 Score=30.26 Aligned_cols=28 Identities=36% Similarity=0.335 Sum_probs=20.1
Q ss_pred ccCCCEEEeecChH---HHHHHHHHHHHcCC
Q 006803 491 VRDGDVLLTYGSSC---VVEMILLYAHELGK 518 (630)
Q Consensus 491 I~dgdvILT~g~S~---tV~~vL~~A~e~gk 518 (630)
++.||+++.+++|+ .+...+..|+++|-
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~ 131 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGM 131 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 78999999987766 68888888988664
No 228
>PRK08912 hypothetical protein; Provisional
Probab=38.76 E-value=4e+02 Score=28.64 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=50.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---------hhHHHHhc-cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---------NAVSYIMH-EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------sAv~~iM~-~Vd~ 564 (630)
++|+|.|.+..+..++......| -+|+|.+ |.+.+.... +...|+.+..+.. ..+-..+. ++..
T Consensus 89 ~i~~t~G~~~al~~~~~~~~~~g--d~Vlv~~--p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (387)
T PRK08912 89 EVMVTSGATEALAAALLALVEPG--DEVVLFQ--PLYDAYLPL--IRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKA 162 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEeC--CCchhhHHH--HHHcCCEEEEEecCcccCcCCHHHHHHHhCccceE
Confidence 78899988887665555443333 3556544 666555433 3456776655532 11112222 3444
Q ss_pred EEEcceeEecCCceecccchHH-------HHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTAC-------VAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~-------lAlaAk~~~VPV~V 600 (630)
|++ + ..-|.+|+.. ++-+|+.|++.+++
T Consensus 163 v~l-------~-~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 163 VLL-------N-NPLNPAGKVFPREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred EEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCeEEEE
Confidence 433 2 3357777642 56677888875553
No 229
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=38.73 E-value=2.2e+02 Score=31.28 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=36.7
Q ss_pred EEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhC
Q 006803 521 RVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF 594 (630)
Q Consensus 521 ~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~ 594 (630)
+|++ +.|.+.|. .+. ..+...|+.++++... .+-..+. +..+|++- .---..|.+ .---.|+-+|+.|
T Consensus 102 ~Vl~--~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie-~p~NPtg~~---~dl~~I~~la~~~ 175 (388)
T PRK07811 102 HIVI--PNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVE-TPTNPLLSI---TDIAALAELAHDA 175 (388)
T ss_pred EEEE--cCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEE-CCCCCccee---cCHHHHHHHHHHc
Confidence 5665 33666543 333 3344568887776422 2222222 33344332 100111222 2234567788899
Q ss_pred CCcEEEe
Q 006803 595 RVPVLIC 601 (630)
Q Consensus 595 ~VPV~V~ 601 (630)
+++++|=
T Consensus 176 gi~lIvD 182 (388)
T PRK07811 176 GAKVVVD 182 (388)
T ss_pred CCEEEEE
Confidence 9887763
No 230
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=38.68 E-value=5e+02 Score=27.42 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=47.1
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHHH-HhCCCcEEEEcchh--------HHHHhc-ccc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRRL-LAKGLSCTYTHINA--------VSYIMH-EVT 563 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~eL-~~~GI~vTlI~DsA--------v~~iM~-~Vd 563 (630)
.+++|.|.+..+..++..... ..-+|++.+ +.+.+... ...+ ...|+.+.++.... +-..+. +..
T Consensus 64 ~v~~~~g~t~al~~~~~~~~~--~gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~ 139 (376)
T TIGR01977 64 HVVFTNNATTALNIALKGLLK--EGDHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTK 139 (376)
T ss_pred eEEEeCCHHHHHHHHHHhccC--CCCEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCe
Confidence 466666666555555544222 234666654 22322221 1223 33488877765211 112222 233
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+|++ .+.-...|.+.. + -.|+-+|++++++|+|
T Consensus 140 ~v~~-~~~~n~tG~~~~-~--~~i~~l~~~~~~~liv 172 (376)
T TIGR01977 140 LIVV-SHASNVTGTILP-I--EEIGELAQENGIFFIL 172 (376)
T ss_pred EEEE-ECCCCCccccCC-H--HHHHHHHHHcCCEEEE
Confidence 3332 222223444443 2 2477778999988876
No 231
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=38.52 E-value=3e+02 Score=26.55 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=62.6
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCC--CCchHHHHHHHHHhCCCcEEEEc-c----hhHHHHhc-------c
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR--PKHEGQALLRRLLAKGLSCTYTH-I----NAVSYIMH-------E 561 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR--P~~eG~~La~eL~~~GI~vTlI~-D----sAv~~iM~-------~ 561 (630)
.|+|=|..+.-..+.+...+++ .-+|+++--+ +..+...+..+|.+.|..++|+. | ..+..++. .
T Consensus 3 ylitGG~gglg~~la~~La~~~-~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERG-ARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEECCccHHHHHHHHHHHHcC-CCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 3444445555566666666666 4466666555 45667778899999999999985 4 33444443 4
Q ss_pred ccEEEEcceeEecCCceecc-------------cchHHHHHHHHhCCCcEEEecccc
Q 006803 562 VTRVFLGASSVLSNGTTYSR-------------VGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NK-------------iGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
++-||-+|-. +.++.+.++ .|+..|.-+...+.+.|+|++.+.
T Consensus 82 i~gVih~ag~-~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSi 137 (181)
T PF08659_consen 82 IDGVIHAAGV-LADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSI 137 (181)
T ss_dssp EEEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEH
T ss_pred cceeeeeeee-ecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECCh
Confidence 6777777654 557777763 355566556666788898886553
No 232
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=38.51 E-value=2.4e+02 Score=29.36 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=64.1
Q ss_pred HHHHHHHhhccCC--CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCC----Cc-------hHH--HH--HHHHHhCC
Q 006803 482 VIVRHAATKVRDG--DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRP----KH-------EGQ--AL--LRRLLAKG 544 (630)
Q Consensus 482 ~Ia~~a~~~I~dg--dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP----~~-------eG~--~L--a~eL~~~G 544 (630)
.+++..++.+.+. |+|+|....+....... |...|..|-++==+..+ .. .|. .| -+.....|
T Consensus 98 ~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~l-A~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G 176 (238)
T PRK08558 98 LIAPVVAERFMGLRVDVVLTAATDGIPLAVAI-ASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKG 176 (238)
T ss_pred HHHHHHHHHccCCCCCEEEEECcccHHHHHHH-HHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCc
Confidence 3444445555543 89999999887776654 33445554432001000 00 111 11 12233567
Q ss_pred CcEEEEcc--------hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 545 LSCTYTHI--------NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 545 I~vTlI~D--------sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
=.|-+|-| .++..++++.+.-++|+-+++..|.. | .--+...+++||+.+.
T Consensus 177 ~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~----~---~~~l~~~~~vpv~sl~ 235 (238)
T PRK08558 177 DRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEV----G---IDRAREETDAPVDALY 235 (238)
T ss_pred CEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch----H---HHHHhHhcCCCEEEEE
Confidence 77777776 45556667888888998888877643 1 2223344889998764
No 233
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=38.38 E-value=2.3e+02 Score=30.31 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=68.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEec
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLS 574 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~a 574 (630)
|..+..-....|..+|.++.+.|.+.-|++.+.-+....++|.....+.|+ .++=-|.++.+-....+...-......
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi--rilGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT--RLIGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCceEEcccccceeeccccCCC
Confidence 666666678889999999999998888888888766555677776767765 344444444443332222222222333
Q ss_pred CC--ceecccchHHHHHH--HHhCCCcEE
Q 006803 575 NG--TTYSRVGTACVAMV--AHAFRVPVL 599 (630)
Q Consensus 575 NG--~V~NKiGT~~lAla--Ak~~~VPV~ 599 (630)
-| .+++..|++..+++ ++..++-|.
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S 171 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQS 171 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 45 37899998888776 677788764
No 234
>PRK08960 hypothetical protein; Provisional
Probab=38.27 E-value=2.6e+02 Score=30.05 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=50.8
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-chh------HHHHh---c
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-INA------VSYIM---H 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA------v~~iM---~ 560 (630)
+..+++++|.|.+..+..++......| -+|+|. .|.+.+......+ .|..+..+. |.. +..+. .
T Consensus 90 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~p~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (387)
T PRK08960 90 VDPERILVTPGGSGALLLASSLLVDPG--KHWLLA--DPGYPCNRHFLRL--VEGAAQLVPVGPDSRYQLTPALVERHWN 163 (387)
T ss_pred CChhhEEEccCcHHHHHHHHHHhcCCC--CEEEEc--CCCCcchHHHHHh--cCCeEEEEecCcccCCCCCHHHHHHHhC
Confidence 455678888888887666655443333 355553 3666555443333 355554443 211 22222 2
Q ss_pred -cccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
+..+|++ .| .-|.+|+. .++-+|+.|++.+++
T Consensus 164 ~~~~~i~i------~~--p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 164 ADTVGALV------AS--PANPTGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred ccceEEEE------EC--CCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 2333322 22 24777774 466678889886654
No 235
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=38.20 E-value=2.7e+02 Score=30.05 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=53.4
Q ss_pred CEEEeecChHHHHHHHHHHHHc-CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----------hH-HHHhccc
Q 006803 495 DVLLTYGSSCVVEMILLYAHEL-GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----------AV-SYIMHEV 562 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~-gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av-~~iM~~V 562 (630)
.+|+|.|.+..+..++....+. |..-.|+|. .|.+.+...+. ...|+.+..|... ++ ..+..++
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~--~P~y~~~~~~~--~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~ 167 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCP--NPFYQIYEGAA--LLAGAEPYFLNCDPANNFAPDFDAVPAEVWART 167 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEc--CCCccchHHHH--HhcCCEEEEeccCccccCccCHHHHHHHHhhcc
Confidence 5778888888776666655444 223445554 67777665543 3457777666421 11 1122244
Q ss_pred cEEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
.++++ + .--|.+|+ -.++-+|+.|++.+++
T Consensus 168 k~i~l-------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 168 QLLFV-------C-SPGNPTGAVLPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred EEEEE-------c-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEe
Confidence 44443 2 34577774 4466677888886653
No 236
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=38.15 E-value=1.6e+02 Score=29.98 Aligned_cols=74 Identities=22% Similarity=0.257 Sum_probs=44.4
Q ss_pred EEEeecChHHHHHHHHHHHHcCC-ceE-EEEcCCCCCchHHHHHHHHHhCCCcEEEEc----------chhHHHHhc--c
Q 006803 496 VLLTYGSSCVVEMILLYAHELGK-QFR-VVVVDSRPKHEGQALLRRLLAKGLSCTYTH----------INAVSYIMH--E 561 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk-~f~-ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~ 561 (630)
.||.-|+.+....++. +.+.|. +.+ ++|+-++|...+.+++. +.|||+..+. +..+-..|. +
T Consensus 3 ~vl~Sg~Gsn~~al~~-~~~~~~l~~~i~~visn~~~~~~~~~A~---~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (207)
T PLN02331 3 AVFVSGGGSNFRAIHD-ACLDGRVNGDVVVVVTNKPGCGGAEYAR---ENGIPVLVYPKTKGEPDGLSPDELVDALRGAG 78 (207)
T ss_pred EEEEeCCChhHHHHHH-HHHcCCCCeEEEEEEEeCCCChHHHHHH---HhCCCEEEeccccCCCcccchHHHHHHHHhcC
Confidence 3566566555555554 455554 444 45566778887766554 4599997754 234444455 6
Q ss_pred ccEEEE-cceeEe
Q 006803 562 VTRVFL-GASSVL 573 (630)
Q Consensus 562 Vd~Viv-GAdaI~ 573 (630)
+|.+|+ |-..|+
T Consensus 79 ~Dliv~agy~~il 91 (207)
T PLN02331 79 VDFVLLAGYLKLI 91 (207)
T ss_pred CCEEEEeCcchhC
Confidence 899888 545544
No 237
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=38.13 E-value=2.4e+02 Score=30.96 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=49.4
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH-HHHHHHH-HhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG-QALLRRL-LAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~~La~eL-~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
.+++|-|.+..+..++......| -+|++ ..|.+.| ..+...+ ...|+.+.++.. ..+...+. +..+|++.
T Consensus 68 ~v~~~~gg~~Ai~~~l~all~~G--D~Vl~--~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~ 143 (382)
T TIGR02080 68 GAVVTNTGMSAIHLVTTALLGPD--DLLVA--PHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIE 143 (382)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCC--CEEEE--cCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 45555555555555554443434 34544 3466665 3444443 445688887632 22333333 34444442
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.---..|.++. --.|+-+|+.+++.++|
T Consensus 144 -~p~NPtG~~~d---l~~I~~la~~~g~~vvv 171 (382)
T TIGR02080 144 -TPSNPLLRVVD---IAKICHLAKAVGAVVVV 171 (382)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11122344433 23677778889987665
No 238
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=38.11 E-value=2e+02 Score=31.86 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=51.7
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 560 (630)
+...++|+|.|.+..+..++......|. +|++. +|.+........+ .|+.+.++.. ..+-.++.
T Consensus 115 ~~~~~v~it~G~~~al~l~~~~l~~~Gd--~Vlv~--~P~y~~y~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 115 LSTDDIYLTAGCAQAIEIIMSVLAQPGA--NILLP--RPGYPLYEARAVF--SGLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCccHHHHHHH--cCCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 3446788998888877666665544333 55555 4666554433333 4565555431 22323332
Q ss_pred -cccEEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
+..+++ +.|- -|.+|+ ..|+-+|++|++++++
T Consensus 189 ~~~~~i~------i~~P--~NPtG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 189 ENTVAMV------IINP--NNPCGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred cCceEEE------EeCC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 233332 2232 266665 3455668889988775
No 239
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=38.10 E-value=79 Score=31.34 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=45.9
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCcee----cccchHHHHHHHHhCC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTY----SRVGTACVAMVAHAFR 595 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~----NKiGT~~lAlaAk~~~ 595 (630)
+-|.|+..-+.-....+.+.|...|+++.++...... -+.++|.+|++-- .+... ...+....-.-+...+
T Consensus 3 i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~-~l~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~~~~ 77 (200)
T PRK13527 3 IGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPG-DLPDCDALIIPGG----ESTTIGRLMKREGILDEIKEKIEEG 77 (200)
T ss_pred EEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChH-HhccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHHHCC
Confidence 4566666654444445567888889887776654432 3456787777432 11111 2223222222233478
Q ss_pred CcEEEecccccc
Q 006803 596 VPVLICCEAYKF 607 (630)
Q Consensus 596 VPV~V~aet~Kf 607 (630)
+|++-+|--+-+
T Consensus 78 ~pilGIC~G~Ql 89 (200)
T PRK13527 78 LPILGTCAGLIL 89 (200)
T ss_pred CeEEEECHHHHH
Confidence 999977754443
No 240
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=38.00 E-value=1.6e+02 Score=29.82 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=48.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh-----HHHHhccccEEEEc-ceeEecCCceecccch-HHHHHHHHh
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA-----VSYIMHEVTRVFLG-ASSVLSNGTTYSRVGT-ACVAMVAHA 593 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-----v~~iM~~Vd~VivG-AdaI~aNG~V~NKiGT-~~lAlaAk~ 593 (630)
+|+|++..+.+.+. +...|.+.|+.+.++.... ...++...|.|||+ -. |+. .+.+. ..+.--+..
T Consensus 2 ~ilv~d~~~~~~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp-----~~~-~~~~~~~~~i~~~~~ 74 (214)
T PRK07765 2 RILVVDNYDSFVFN-LVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGP-----GTP-ERAGASIDMVRACAA 74 (214)
T ss_pred eEEEEECCCcHHHH-HHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCC-----CCh-hhcchHHHHHHHHHh
Confidence 67888888766664 6688899999999886543 22234568888773 21 221 22332 233344455
Q ss_pred CCCcEEEecccc
Q 006803 594 FRVPVLICCEAY 605 (630)
Q Consensus 594 ~~VPV~V~aet~ 605 (630)
.++||+=+|=-+
T Consensus 75 ~~~PiLGIC~G~ 86 (214)
T PRK07765 75 AGTPLLGVCLGH 86 (214)
T ss_pred CCCCEEEEccCH
Confidence 789999766433
No 241
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=37.96 E-value=1.5e+02 Score=33.27 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=60.1
Q ss_pred CCEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 494 GDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 494 gdvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
..+||..|-++-|=. ++..+.+.| .+|++++.........+. .+.. ...++++........+.++|.||--|-..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G--~~V~~ldr~~~~~~~~~~-~~~~-~~~~~~~~~Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG--DEVIVIDNFFTGRKENLV-HLFG-NPRFELIRHDVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCccHhHhh-hhcc-CCceEEEECccccccccCCCEEEECceec
Confidence 468999999987654 444444544 577777643221111121 1211 12344444322333345788887766322
Q ss_pred ecCCc--------eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 573 LSNGT--------TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 573 ~aNG~--------V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
..... -.|-.||..+.-+|+.+++.|+.+.-+
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~ 235 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTS 235 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcH
Confidence 11010 168889999999999999977665443
No 242
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=37.87 E-value=1.4e+02 Score=31.69 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=17.7
Q ss_pred Cceecccch----HHHHHHHHhCCCcEEEecccc
Q 006803 576 GTTYSRVGT----ACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 576 G~V~NKiGT----~~lAlaAk~~~VPV~V~aet~ 605 (630)
|.+.|..|+ -.|+-+|++|++++++ =+.|
T Consensus 181 ~~v~~~~G~~~~~~~l~~la~~~~~~li~-De~~ 213 (397)
T PRK06939 181 DGVFSMDGDIAPLPEICDLADKYDALVMV-DDSH 213 (397)
T ss_pred ecCcCCCCCcCCHHHHHHHHHHhCCEEEE-ECcc
Confidence 334455443 3566778999998765 3444
No 243
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=37.86 E-value=1.5e+02 Score=32.32 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=67.4
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHH-hCCCcEEEEcchhHHHHhccccEEEEcc--ee
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLL-AKGLSCTYTHINAVSYIMHEVTRVFLGA--SS 571 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI~DsAv~~iM~~Vd~VivGA--da 571 (630)
|..+.+=-...+...|.+|.+.|.+.-|+++|.-|...+.++.+.+. +.| +.+|=-|..+.+-+.. ..+|. ..
T Consensus 90 D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g--~rliGPNc~Gii~p~~--~~~gi~p~~ 165 (317)
T PTZ00187 90 DASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNK--TRLIGPNCPGIIKPGE--CKIGIMPGH 165 (317)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCC--CEEECCCCceEEcchh--hccccCCcC
Confidence 55566666778889999999999999999999999988887774443 244 3566666666554432 12222 12
Q ss_pred EecCC--ceecccchHHHHHH--HHhCCCcEEE
Q 006803 572 VLSNG--TTYSRVGTACVAMV--AHAFRVPVLI 600 (630)
Q Consensus 572 I~aNG--~V~NKiGT~~lAla--Ak~~~VPV~V 600 (630)
++.-| +++++.||+...++ +...++-|--
T Consensus 166 ~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~ 198 (317)
T PTZ00187 166 IHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQST 198 (317)
T ss_pred CCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 33345 67899997766655 5555655543
No 244
>PRK06348 aspartate aminotransferase; Provisional
Probab=37.83 E-value=2.8e+02 Score=29.83 Aligned_cols=96 Identities=11% Similarity=0.182 Sum_probs=53.3
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc---c-------hhHHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH---I-------NAVSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~---D-------sAv~~iM~ 560 (630)
+...++++|.|.+..+..++......|. +|+|. .|.+.+...+.++ .|..+..+. + ..+-..+.
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQSILDPGD--EVIIH--EPYFTPYKDQIEM--VGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHHHHH--cCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4455788888888776666665544443 56653 4777665554333 465555542 1 12222232
Q ss_pred -cccEEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
++..|++- ..-|..|. ..++-+|++|++.+++
T Consensus 161 ~~~~~v~l~--------~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 161 SKTKAIILN--------SPNNPTGAVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred cCccEEEEe--------CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 44444432 23466665 4466678888876553
No 245
>PLN02187 rooty/superroot1
Probab=37.75 E-value=3.8e+02 Score=30.19 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=53.0
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 560 (630)
+...++++|.|.+..+..++....+.| -+|+|.+ |.+.+.... +...|+.+..+.. ..+-..+.
T Consensus 129 ~~~~~I~it~G~~~al~~~~~~l~~pG--d~Vlv~~--P~y~~y~~~--~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPN--ANILLPR--PGFPHYDAR--AAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCCccHHHH--HHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 455678888888877766666544434 3455544 666554332 3456777765532 11222222
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+..+|++.-=. -..|.++++-=-..|+-+|+.|++.+++
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 23333332100 1223333332234567778888987764
No 246
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=37.65 E-value=1.1e+02 Score=30.42 Aligned_cols=95 Identities=15% Similarity=0.263 Sum_probs=49.0
Q ss_pred CEEEeecChH----HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHHhcc--ccEE
Q 006803 495 DVLLTYGSSC----VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYIMHE--VTRV 565 (630)
Q Consensus 495 dvILT~g~S~----tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~--Vd~V 565 (630)
..|..||-|- .+..++.+..++....+|+++-+-| .|.+++..+...++.+.|.+. .++..++.. -+.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~ 99 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTP--TGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLL 99 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-C--CHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEE
Confidence 8999999884 4556666665555677888876644 378888666555888999875 445555654 3555
Q ss_pred EE-cceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 566 FL-GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 566 iv-GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
|+ +.|-. .| +-..|+..|||++.+..
T Consensus 100 i~~EtElW-Pn-----------ll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 100 IWVETELW-PN-----------LLREAKRRGIPVVLVNA 126 (186)
T ss_dssp EEES-----HH-----------HHHH-----S-EEEEEE
T ss_pred EEEccccC-HH-----------HHHHHhhcCCCEEEEee
Confidence 44 54433 33 67788899999998754
No 247
>PRK07681 aspartate aminotransferase; Provisional
Probab=37.36 E-value=2.9e+02 Score=29.91 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=51.4
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---h----HHHHh----ccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---A----VSYIM----HEV 562 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---A----v~~iM----~~V 562 (630)
.++|+|.|.+..+..++....+.| -+|+|.+ |.+.+.... +...|+.+..+... . +..+. .++
T Consensus 94 ~~I~it~G~~~al~~~~~~~~~~G--d~Vlv~~--P~y~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 167 (399)
T PRK07681 94 KEVLLLMGSQDGLVHLPMVYANPG--DIILVPD--PGYTAYETG--IQMAGATSYYMPLKKENDFLPDLELIPEEIADKA 167 (399)
T ss_pred CeEEECCCcHHHHHHHHHHhCCCC--CEEEECC--CCccchHHH--HHhcCCEEEEEecCCCCCCcCCHHHHHHhccccc
Confidence 567788887776655554443333 3455543 666655443 34568877766521 1 11121 234
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..|++- .-=-..|.++++-=-..|+-+|+.|++.+++
T Consensus 168 k~v~l~-~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~ 204 (399)
T PRK07681 168 KMMILN-FPGNPVPAMAHEDFFKEVIAFAKKHNIIVVH 204 (399)
T ss_pred eEEEEe-CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 444332 0000113333333345677788999986553
No 248
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.32 E-value=6.2e+02 Score=28.14 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=56.2
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH---hcc--ccEEEE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI---MHE--VTRVFL 567 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i---M~~--Vd~Viv 567 (630)
.|..|+.++....+..+.+-+.+.|-....+++.+.-.....++...+...++....+.+.-..-+ |.+ .|.|
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdli-- 375 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLL-- 375 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEE--
Confidence 578888888888777777777777877665555443222234443333335666655555444444 333 4544
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+.| ..-.-+|+..++|++.++
T Consensus 376 -----ig~---------~~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 376 -----IGN---------SHGRYLARDLGIPLVRVG 396 (428)
T ss_pred -----EEC---------chhHHHHHhcCCCEEEec
Confidence 322 234567888999998654
No 249
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=37.10 E-value=1.8e+02 Score=32.01 Aligned_cols=66 Identities=15% Similarity=0.329 Sum_probs=42.5
Q ss_pred HHHHhCCCcEEEEcc--------hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhC----CCcEEEecccc
Q 006803 538 RRLLAKGLSCTYTHI--------NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF----RVPVLICCEAY 605 (630)
Q Consensus 538 ~eL~~~GI~vTlI~D--------sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~----~VPV~V~aet~ 605 (630)
.+|.+.||.+++|.. ..+-..+++.+.|| ++.++....-.|+.....++.+. .+|+.-+|-..
T Consensus 253 ~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~Iv-----vvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d 327 (355)
T PTZ00182 253 EELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCV-----IVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGAD 327 (355)
T ss_pred HHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEEE-----EEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCC
Confidence 444455555555542 13444556677775 46677777778888888888875 77888776655
Q ss_pred ccc
Q 006803 606 KFH 608 (630)
Q Consensus 606 Kf~ 608 (630)
.|.
T Consensus 328 ~~~ 330 (355)
T PTZ00182 328 TPF 330 (355)
T ss_pred ccC
Confidence 554
No 250
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=37.06 E-value=1.4e+02 Score=30.19 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=46.0
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEE-cCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc--cc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVV-VDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH--EV 562 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV-~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~V 562 (630)
.||.-|+++.+..++...++.+....|.+ +-.++...+ .....+.|||+..+.. ..+...+. ++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~---~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG---LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchH---HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 46777778887777776655544555443 333444443 3445677999988652 23334443 68
Q ss_pred cEEEE-cceeEec
Q 006803 563 TRVFL-GASSVLS 574 (630)
Q Consensus 563 d~Viv-GAdaI~a 574 (630)
|.+|+ |-..|+.
T Consensus 82 D~iv~~~~~~ii~ 94 (200)
T PRK05647 82 DLVVLAGFMRILG 94 (200)
T ss_pred CEEEhHHhhhhCC
Confidence 98877 5555554
No 251
>PRK08064 cystathionine beta-lyase; Provisional
Probab=36.91 E-value=4.5e+02 Score=28.82 Aligned_cols=97 Identities=11% Similarity=0.144 Sum_probs=49.1
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
..|++-+-+..+..+|. +...|. +|++. .|.+.|. .+. ..+...|+.++++... .+-..+. +..+|++
T Consensus 71 ~~v~~~sG~~ai~~~l~-~l~~Gd--~Vlv~--~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l- 144 (390)
T PRK08064 71 KGFAFASGMAAISTAFL-LLSKGD--HVLIS--EDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYV- 144 (390)
T ss_pred CeEEECCHHHHHHHHHH-HhCCCC--EEEEc--cCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEE-
Confidence 34554222334444443 444444 56664 3555543 233 4567789999988643 2333332 4444444
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+.---..|.+.. --.|+-+|+.++++|+|
T Consensus 145 ~~p~NptG~~~d---l~~I~~la~~~g~~vvv 173 (390)
T PRK08064 145 ETPSNPLLKVTD---IRGVVKLAKAIGCLTFV 173 (390)
T ss_pred ECCCCCCcEecc---HHHHHHHHHHcCCEEEE
Confidence 211112233321 13567788999987776
No 252
>PRK10481 hypothetical protein; Provisional
Probab=36.89 E-value=2.2e+02 Score=29.67 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=51.5
Q ss_pred HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----hHHHHhcccc-EEEEcceeEecCCceecccc
Q 006803 509 ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----AVSYIMHEVT-RVFLGASSVLSNGTTYSRVG 583 (630)
Q Consensus 509 vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----Av~~iM~~Vd-~VivGAdaI~aNG~V~NKiG 583 (630)
-+..|.-.|++|-|++..- -++.+..++....|+++.+...+ ....+..-+. +.--|||.|+-++.=++.
T Consensus 121 ~lv~Al~~g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-- 195 (224)
T PRK10481 121 PLVAAIVGGHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-- 195 (224)
T ss_pred HHHHHhcCCCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH--
Confidence 3444556788899887542 24556667777779998877722 1111111111 112466666655544443
Q ss_pred hHHHHHHHHhCCCcEEE
Q 006803 584 TACVAMVAHAFRVPVLI 600 (630)
Q Consensus 584 T~~lAlaAk~~~VPV~V 600 (630)
-....+.+..++||+-
T Consensus 196 -~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 196 -RHRDLLQKALDVPVLL 211 (224)
T ss_pred -HHHHHHHHHHCcCEEc
Confidence 4578899999999984
No 253
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.83 E-value=2.1e+02 Score=31.74 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=40.6
Q ss_pred eecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH---HHHhccccEEEEcc
Q 006803 499 TYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV---SYIMHEVTRVFLGA 569 (630)
Q Consensus 499 T~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv---~~iM~~Vd~VivGA 569 (630)
=.|.|+.. ..+.+++.| ..|.+.|.++...=..+...|.+.||.+.+-.+... ...+...|.||++.
T Consensus 7 G~G~sG~s--~a~~l~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 7 GLGRSGIA--AARLLKAQG--WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred ccCHHHHH--HHHHHHHCC--CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 34555543 344455555 589999988765333344568888988865443321 23456789888854
No 254
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=36.73 E-value=1.2e+02 Score=34.71 Aligned_cols=91 Identities=23% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEe
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
|..|+.+|-..+=+.+.+..++.| ..|+|.|.+|.-++.... .|...||.+..--... .....+|.|++-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~S----- 76 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVKS----- 76 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEEC-----
Confidence 667777664443344555555555 789999999988665544 7777888776654333 344456676553
Q ss_pred cCCceecccchHHHHHHHHhCCCcEE
Q 006803 574 SNGTTYSRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 574 aNG~V~NKiGT~~lAlaAk~~~VPV~ 599 (630)
=++ -.+..+--.|+..+|||+
T Consensus 77 --PGi---~~~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 77 --PGI---PPTHPLVEAAKAAGIEII 97 (448)
T ss_pred --CCC---CCCCHHHHHHHHcCCcEE
Confidence 223 234446667777777765
No 255
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=36.64 E-value=3.1e+02 Score=28.41 Aligned_cols=92 Identities=12% Similarity=0.059 Sum_probs=48.0
Q ss_pred CCEEEeecChHHHH---HHHHHHHHc--CCceEE-EEcCCCCCchHHHHHHHHHhCCCcEE-EEcchhHHHHhccccEEE
Q 006803 494 GDVLLTYGSSCVVE---MILLYAHEL--GKQFRV-VVVDSRPKHEGQALLRRLLAKGLSCT-YTHINAVSYIMHEVTRVF 566 (630)
Q Consensus 494 gdvILT~g~S~tV~---~vL~~A~e~--gk~f~V-iV~ESRP~~eG~~La~eL~~~GI~vT-lI~DsAv~~iM~~Vd~Vi 566 (630)
..+|+.+|.+.-.. .+|..|.+. ....++ +++...+. ..+-..+.+.|+... ..+..-+..+|..+|.+|
T Consensus 179 ~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~---~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v 255 (348)
T TIGR01133 179 KPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKNDL---EKVKNVYQELGIEAIVTFIDENMAAAYAAADLVI 255 (348)
T ss_pred CeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcchH---HHHHHHHhhCCceEEecCcccCHHHHHHhCCEEE
Confidence 35677877554322 223333321 122333 34433222 344455566676322 222325778899999887
Q ss_pred EcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 567 LGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 567 vGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+- .|+ ...+=|-..|+|++++.
T Consensus 256 ~~-------------~g~-~~l~Ea~~~g~Pvv~~~ 277 (348)
T TIGR01133 256 SR-------------AGA-STVAELAAAGVPAILIP 277 (348)
T ss_pred EC-------------CCh-hHHHHHHHcCCCEEEee
Confidence 51 131 23446667899999863
No 256
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=36.50 E-value=60 Score=33.87 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=59.3
Q ss_pred HHhhccCCCEE---EeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhcccc
Q 006803 487 AATKVRDGDVL---LTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVT 563 (630)
Q Consensus 487 a~~~I~dgdvI---LT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd 563 (630)
..++|+.+|.| --+||=--+...|. -+|.||+.|-.|.+--+ -..+|.....+++++|
T Consensus 106 il~li~~~d~IkmI~~fg~m~p~v~~l~------ek~~v~~~er~~~~pkr-------------~t~~d~~e~~iLP~~D 166 (250)
T COG2014 106 ILDLIQRDDKIKMIAEFGNMPPVVRTLK------EKFEVYVFERNPKLPKR-------------GTLSDTLEYQILPEVD 166 (250)
T ss_pred HHHHHcCCCceeEEEecCCCChHHHHhh------hheEEEEeccCccCccc-------------ccccchhhhhhccccc
Confidence 35677777654 44555222333333 47999999988765322 2367888889999999
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCC-CcEEEeccccccccc
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFR-VPVLICCEAYKFHER 610 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~-VPV~V~aet~Kf~~r 610 (630)
.+++.|.+++ || |.-. +++.+-+ .=|+.+.||--+-+.
T Consensus 167 vii~SaStlv-N~-------T~d~-~Ld~ak~ak~vvl~GPTa~l~pe 205 (250)
T COG2014 167 VIIASASTLV-NG-------TLDM-ILDRAKKAKLVVLTGPTAQLLPE 205 (250)
T ss_pred EEEEechhhh-cC-------cHHH-HHhhhccCcEEEEeCCCcccchh
Confidence 9999998877 65 3333 2333333 334455666555433
No 257
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=36.44 E-value=3e+02 Score=29.77 Aligned_cols=96 Identities=18% Similarity=0.315 Sum_probs=50.9
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 560 (630)
+....+++|.|.+..+..++....+.|. +|++. .|.+.... ..+...|+.+..+.. ..+-..+.
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~v~i~--~P~y~~~~--~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~ 166 (401)
T TIGR01264 93 IEADDVVLCSGCSHAIEMCIAALANAGQ--NILVP--RPGFPLYE--TLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166 (401)
T ss_pred CCHHHEEECcChHHHHHHHHHHhCCCCC--EEEEe--CCCChhHH--HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc
Confidence 3344577777777766555544433333 45554 36654432 334556877766531 11222222
Q ss_pred -cccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
++.+|++. | --|..|+. .|+-+|+++++.+++
T Consensus 167 ~~~~~v~~~------~--p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 167 EKTAALIVN------N--PSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred cCceEEEEc------C--CCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444431 2 24677754 466677888887664
No 258
>PLN02828 formyltetrahydrofolate deformylase
Probab=36.44 E-value=1.4e+02 Score=31.76 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=64.6
Q ss_pred CEEEeecChHHHHHHHHHHHHcCC-ceEEEEcCC-CCCchHHHHHHHHHhCCCcEEEEcc-------hhHHHHhccccEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGK-QFRVVVVDS-RPKHEGQALLRRLLAKGLSCTYTHI-------NAVSYIMHEVTRV 565 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk-~f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~~Vd~V 565 (630)
-.||.-++.+....+|.. ++.|. ...|.++=| +|...+..+.....+.|||+.++.. ..+..++.++|.|
T Consensus 73 iavlvSg~g~nl~~ll~~-~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~Dli 151 (268)
T PLN02828 73 IAVLASKQDHCLIDLLHR-WQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFL 151 (268)
T ss_pred EEEEEcCCChhHHHHHHh-hhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 356776777777766665 44554 345444433 3222233444555678999998753 2344556689998
Q ss_pred EEcc-eeEec-------CCceec--------ccchHHHHHHHHhCCCcEEEecccccccccccCCCcc
Q 006803 566 FLGA-SSVLS-------NGTTYS--------RVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSIC 617 (630)
Q Consensus 566 ivGA-daI~a-------NG~V~N--------KiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i 617 (630)
++.. -.|+. .|.++| =-|...+ --|-..|+.+.=|+- +..++.+-.|.++
T Consensus 152 VLAgym~IL~~~~l~~~~~riINIHpSlLP~f~Ga~p~-~~Ai~~Gvk~tG~Tv-H~V~~~lD~GpII 217 (268)
T PLN02828 152 VLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGNPS-KQAFDAGVKLIGATS-HFVTEELDAGPII 217 (268)
T ss_pred EEeeehHhCCHHHHhhccCCEEEecCccCCCCCCCcHH-HHHHHcCCCeEEEEE-EEEcCCCCCCCee
Confidence 8752 12221 355776 2343332 223455777765433 3345555555544
No 259
>PLN02735 carbamoyl-phosphate synthase
Probab=36.42 E-value=2.2e+02 Score=36.04 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCEEEeecC--hHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc------chhHHHHhc-cccE
Q 006803 494 GDVLLTYGS--SCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH------INAVSYIMH-EVTR 564 (630)
Q Consensus 494 gdvILT~g~--S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~------DsAv~~iM~-~Vd~ 564 (630)
|.++++.+. -.-+..+.+..++ ..|++|.++. .++.|.+.||+|+.+. .+.+-.+.. ++|+
T Consensus 973 g~vliSv~d~~K~~~~~~a~~L~~--lG~~i~aT~G--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~ 1042 (1102)
T PLN02735 973 GTVFISLNDLTKPHLVPIARGFLE--LGFRIVSTSG--------TAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQL 1042 (1102)
T ss_pred CeEEEEEecCCchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeEE
Confidence 445555554 2233444444443 3467776653 4578889999988763 234444443 6999
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
||-- .+|.-.-..-.|.+=-+|-.+|||++--..+-+
T Consensus 1043 vin~-----~~~~~~~~~d~~~iRr~a~~~~ip~~t~~~~a~ 1079 (1102)
T PLN02735 1043 MVIT-----SSGDALDQKDGRQLRRMALAYKVPIITTVAGAL 1079 (1102)
T ss_pred EEEC-----CCCccccccccHHHHHHHHHcCCCEEecHHHHH
Confidence 9853 234332133467888999999999986544433
No 260
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=36.32 E-value=4e+02 Score=28.57 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=52.0
Q ss_pred CCEEEeec-ChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-chh------HH---HHhc-c
Q 006803 494 GDVLLTYG-SSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-INA------VS---YIMH-E 561 (630)
Q Consensus 494 gdvILT~g-~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA------v~---~iM~-~ 561 (630)
..+|+|.| -+..++.++......+++..+++ ++|+ |.+.+..+.+.|++++++. |.. .. ..+. +
T Consensus 63 ~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~--~g~~--~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 138 (355)
T cd00611 63 YKVLFLQGGATGQFAAVPLNLLGDKGTADYVV--TGAW--SAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPD 138 (355)
T ss_pred ceEEEEcCCchHHHHHHHHhcCCCCCeEEEEE--CCHH--HHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCC
Confidence 46888888 55556666665543334433333 3555 4555555677799988875 311 11 1122 3
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+ +|.-+++-...|.++. -+++.|++.|+|
T Consensus 139 ~~-lV~~~h~~t~tG~~~~--------~i~~~~g~~~~V 168 (355)
T cd00611 139 AA-YVHYCSNETIHGVEFD--------EVPDTGGVPLVA 168 (355)
T ss_pred CC-EEEEeCCcccccEEcc--------eecccCCCeEEE
Confidence 44 4455556666666543 334558888777
No 261
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=36.30 E-value=2e+02 Score=32.89 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCcEEEEcch--------hHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHh----CCCcEEEec
Q 006803 535 ALLRRLLAKGLSCTYTHIN--------AVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA----FRVPVLICC 602 (630)
Q Consensus 535 ~La~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~----~~VPV~V~a 602 (630)
+.+..|.+.||++++|... .+-...++.+.|| ++.+|....-+|+...+.++.+ ...||.-++
T Consensus 357 ~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~ 431 (464)
T PRK11892 357 KAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVT 431 (464)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEec
Confidence 3456777788888888643 2344455666664 5678888888999999999887 367998876
Q ss_pred cccccc
Q 006803 603 EAYKFH 608 (630)
Q Consensus 603 et~Kf~ 608 (630)
-...|.
T Consensus 432 ~~d~~~ 437 (464)
T PRK11892 432 GKDVPM 437 (464)
T ss_pred cCCccC
Confidence 654443
No 262
>PRK15029 arginine decarboxylase; Provisional
Probab=36.25 E-value=1.4e+02 Score=36.41 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=55.6
Q ss_pred EEEEcCCCCCc-------hHHHHHHHHHhCCCcEEEEcch--hHHHHhc--cccEEEEcceeEecCCceecccchHHHHH
Q 006803 521 RVVVVDSRPKH-------EGQALLRRLLAKGLSCTYTHIN--AVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAM 589 (630)
Q Consensus 521 ~ViV~ESRP~~-------eG~~La~eL~~~GI~vTlI~Ds--Av~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAl 589 (630)
+|+++|..+.. ....|...|...|+.|....+. +...+-. ..|+||+ |..+.+++-+. .|...+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 57778777642 3455668899999999988863 4444433 4899998 66677766332 11222222
Q ss_pred HH-HhCCCcEEEeccccccccccc
Q 006803 590 VA-HAFRVPVLICCEAYKFHERVQ 612 (630)
Q Consensus 590 aA-k~~~VPV~V~aet~Kf~~r~~ 612 (630)
+- ...++|||+++..-.-.++++
T Consensus 79 IR~~~~~iPIIlLTar~~~~~~~~ 102 (755)
T PRK15029 79 LHERQQNVPVFLLGDREKALAAMD 102 (755)
T ss_pred HHhhCCCCCEEEEEcCCcccccCC
Confidence 22 235899999987664334444
No 263
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=36.22 E-value=4.1e+02 Score=29.10 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhh----ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--
Q 006803 479 ADKVIVRHAATK----VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-- 552 (630)
Q Consensus 479 A~~~Ia~~a~~~----I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-- 552 (630)
..+.|+++.... +...++|+|.|.+..+..++....+.|. .|++.+ |.+.+..... ...|+.+..+..
T Consensus 79 lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd--~v~v~~--P~y~~~~~~~--~~~g~~~~~~~~~~ 152 (409)
T PLN00143 79 ARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEA--NILLPR--PGFPDVETYA--IFHHLEIRHFDLLP 152 (409)
T ss_pred HHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCC--EEEEcC--CCCcCHHHHH--HHcCCEEEEEeccC
Confidence 345566554332 4445788888877766666554444443 444433 6665543332 335666655531
Q ss_pred --------hhHHHHhc-cccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 553 --------NAVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 553 --------sAv~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
.++-.++. +..+|++ .|= -|.+|+. .|+-+|+.|++.+++
T Consensus 153 ~~~~~~d~~~l~~~~~~~~~~~~~------~nP--~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 153 EKGWEVDLDAVEAIADENTIAMVI------INP--GNPCGSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCCCcCCHHHHHHhcccCCEEEEE------ECC--CCCCCCccCHHHHHHHHHHHHHcCCeEEE
Confidence 12222222 2333332 232 3777775 456668888987664
No 264
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=35.94 E-value=5.8e+02 Score=27.39 Aligned_cols=102 Identities=14% Similarity=0.214 Sum_probs=48.6
Q ss_pred CCEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHH-HH-HHhCCCcEEEEcc--------hhHHHHhc-
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALL-RR-LLAKGLSCTYTHI--------NAVSYIMH- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La-~e-L~~~GI~vTlI~D--------sAv~~iM~- 560 (630)
.++++|.|.+..+..++..... .+..-+|++.+.- +.+.... +. ....|+.+.++.. ..+-..+.
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEME--HHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcch--hhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence 3567775554444444433211 1233467776542 2222222 22 3356888777742 11222222
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+..+|++. +.-...|.+.. .-.|+-+|+.||++++|=
T Consensus 159 ~~~lv~~~-~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD 195 (403)
T TIGR01979 159 KTKLVAIT-HVSNVLGTVNP---VEEIAKLAHQVGAKVLVD 195 (403)
T ss_pred CCeEEEEE-cccccccccCC---HHHHHHHHHHcCCEEEEE
Confidence 33444432 22222344433 345777889999988874
No 265
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=35.77 E-value=72 Score=35.36 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=44.2
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCc--hHHHHHHHHHh--CCCc-EEEEcchhHHHHhc--cccEEEEc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKH--EGQALLRRLLA--KGLS-CTYTHINAVSYIMH--EVTRVFLG 568 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~--eG~~La~eL~~--~GI~-vTlI~DsAv~~iM~--~Vd~VivG 568 (630)
.||..|++.....+++.|.+.| ++|+++.+.+.. .+..++.+... -+.. -.|+...++-.+.. .+|.|+-|
T Consensus 4 ~iLi~g~g~~a~~i~~aa~~~G--~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~ 81 (451)
T PRK08591 4 KILIANRGEIALRIIRACKELG--IKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPG 81 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--CeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEEC
Confidence 6899999999999999998876 556666444332 33433321100 0000 02222123333322 58999888
Q ss_pred ceeEecCC
Q 006803 569 ASSVLSNG 576 (630)
Q Consensus 569 AdaI~aNG 576 (630)
.+-...|+
T Consensus 82 ~~~~~e~~ 89 (451)
T PRK08591 82 YGFLSENA 89 (451)
T ss_pred CCccccCH
Confidence 76555554
No 266
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.75 E-value=2.6e+02 Score=31.22 Aligned_cols=97 Identities=21% Similarity=0.277 Sum_probs=48.8
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEc--c-hhHHHHhc-cccEEEEcc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTH--I-NAVSYIMH-EVTRVFLGA 569 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~--D-sAv~~iM~-~Vd~VivGA 569 (630)
.|+|-+-+..+..+|....+.|. +|++.+ +.+.|. .+. ..|...|+.++++. | ..+-..+. ++.+|++ .
T Consensus 76 ~l~~ssG~~Ai~~al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~l-e 150 (425)
T PRK06084 76 ALAVASGMAAITYAIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFC-E 150 (425)
T ss_pred eeEehhHHHHHHHHHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEE-e
Confidence 44443333333444444444443 455544 344433 223 33445688887774 2 33444443 4555555 2
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.---..|.++. -..++-+|+.|+++++|
T Consensus 151 sp~NPtG~v~d---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 151 SIGNPAGNIID---IQALADAAHRHGVPLIV 178 (425)
T ss_pred CCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 22233444443 26677788999988876
No 267
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=35.69 E-value=1.6e+02 Score=30.04 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=61.5
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|..||.+|...+.+.=++...+.|-+.+||-.|.-|.+ .....+.+ ++.+-+.--...+..+++||+..|--
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el-----~~~~~~~~--i~~~~~~~~~~~~~~~~lviaAt~d~ 83 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPEL-----KALIEEGK--IKWIEREFDAEDLDDAFLVIAATDDE 83 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHH-----HHHHHhcC--cchhhcccChhhhcCceEEEEeCCCH
Confidence 477899999999988777777788999999988873332 22222223 22222222222233477887765432
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
- ---.++-+|+.+++||.|+-.
T Consensus 84 ~---------ln~~i~~~a~~~~i~vNv~D~ 105 (210)
T COG1648 84 E---------LNERIAKAARERRILVNVVDD 105 (210)
T ss_pred H---------HHHHHHHHHHHhCCceeccCC
Confidence 2 234688999999999999843
No 268
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=35.64 E-value=3.3e+02 Score=28.94 Aligned_cols=16 Identities=6% Similarity=0.169 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCcEEE
Q 006803 585 ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 585 ~~lAlaAk~~~VPV~V 600 (630)
..|+-+|+.|++.+++
T Consensus 183 ~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 183 PEIVELAERYGAVTYV 198 (385)
T ss_pred HHHHHHHHHhCCEEEE
Confidence 4577788999987775
No 269
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.63 E-value=1.2e+02 Score=26.99 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=46.5
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhccccEEEEcceeEec
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMHEVTRVFLGASSVLS 574 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~~Vd~VivGAdaI~a 574 (630)
||+.|.++.--.++.. .+-+.|.+.|+++++..-+. +...+.+.|.|+++-+.-+.
T Consensus 2 Il~~Cg~G~sTS~~~~----------------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~ 59 (96)
T cd05564 2 ILLVCSAGMSTSILVK----------------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYM 59 (96)
T ss_pred EEEEcCCCchHHHHHH----------------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHH
Confidence 7888877765555432 14467788898877776544 33367789999888654331
Q ss_pred CCceecccchHHHHHHHHhCCCcEEEe
Q 006803 575 NGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 575 NG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
= - .+--.+..+++||.++
T Consensus 60 ~-------~--~i~~~~~~~~~pv~~I 77 (96)
T cd05564 60 L-------D--EVKKKAAEYGIPVAVI 77 (96)
T ss_pred H-------H--HHHHHhccCCCcEEEc
Confidence 1 1 1111234578999987
No 270
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=35.55 E-value=4.9e+02 Score=28.97 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCC--CCCchHHHHHHHHHhCCCcE
Q 006803 470 RFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDS--RPKHEGQALLRRLLAKGLSC 547 (630)
Q Consensus 470 ~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES--RP~~eG~~La~eL~~~GI~v 547 (630)
++++++.......+-.| .++. | .+..++....+..+.+-+.+.|-..-.+++.. ++.. ......|...|+.+
T Consensus 260 ~~~~~e~~~~~~~ld~~--~~l~-g-kv~v~g~~~~~~~la~~L~elGmevv~~~t~~~~~~~~--~~~~~~l~~~~~~v 333 (416)
T cd01980 260 KVANEEKAAAKGAIRAF--SPIK-G-RVLVSGYEGNELLVARLLIESGAEVPYVSTSIPKTSLS--APDYEWLSALGVEV 333 (416)
T ss_pred HHHHHHHHHHHHHHhhH--HhhC-c-eEEEECCCchhHHHHHHHHHcCCEEEEEecCCCChhhh--HHHHHHHHhcCCcc
Confidence 34434333444444333 2454 5 57678888877777777777776654444432 2222 23333454455543
Q ss_pred EEEcchh-HHHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 548 TYTHINA-VSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 548 TlI~DsA-v~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
.+-.|-. .-..+. ++|++|- | +-....|++.+||++-+..
T Consensus 334 ~~~~~~~~~~~~~~~~~pDl~Ig-------~---------s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 334 RYRKSLEDDIAAVEEYRPDLAIG-------T---------TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred ccCCCHHHHHHHHhhcCCCEEEe-------C---------ChhhHHHHHhCCCEEEecC
Confidence 3222211 122222 4565542 2 2245689999999987654
No 271
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=35.42 E-value=4.8e+02 Score=28.57 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=66.6
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC---------CCc---------hHHHHHHHHHhC-
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR---------PKH---------EGQALLRRLLAK- 543 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR---------P~~---------eG~~La~eL~~~- 543 (630)
++..+...|. +..||.+|..++-..++..+...|.. +++++|-. -.+ --..++..|.+.
T Consensus 125 ~g~~~q~~l~-~~~VlvvG~GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 125 VGEEGQRRLL-EARVLLIGAGGLGSPAALYLAAAGVG-TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred cCHHHHHHHh-cCcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 4444555664 46788889988777777777777764 33333321 110 112334556554
Q ss_pred -CCcEEEEc----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 544 -GLSCTYTH----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 544 -GI~vTlI~----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.+.++.+. ...+..++.++|.||-..|.+. --+.+.-+|+.++|||+.+.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~---------~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFP---------TRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 35544443 2345567788999998888653 13457788999999998763
No 272
>PLN02591 tryptophan synthase
Probab=35.26 E-value=4.1e+02 Score=27.97 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=64.6
Q ss_pred CEEEeecCh---HHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-chh----HHHHhccccEEE
Q 006803 495 DVLLTYGSS---CVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-INA----VSYIMHEVTRVF 566 (630)
Q Consensus 495 dvILT~g~S---~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA----v~~iM~~Vd~Vi 566 (630)
-++|||-|- .-++.++..+.+.|-. -|++.|= |..|...+...+.++||....+. .+. +..+....+-.|
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~-GviipDL-P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI 158 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVH-GLVVPDL-PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV 158 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCC-EEEeCCC-CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 368888874 3568899999887743 4677765 66788888899999999765554 433 334444332222
Q ss_pred EcceeEecCCceecccc-----hHHHHHHHHhCCCcEEEe
Q 006803 567 LGASSVLSNGTTYSRVG-----TACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 567 vGAdaI~aNG~V~NKiG-----T~~lAlaAk~~~VPV~V~ 601 (630)
..|..+|-.-.+.+ ...+..+-++.++|++|=
T Consensus 159 ---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 159 ---YLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred ---EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 23333544443333 233666777779999984
No 273
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=35.14 E-value=48 Score=37.89 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=42.1
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcchhHHHHhc--cccEEEEcceeE
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSYIMH--EVTRVFLGASSV 572 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaI 572 (630)
.||..|..+-...+...+.+..+..+||++...+ +-|... +..+...-+.+.+.....+..+.+ ++|.||+|.+.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6889998886555555565554567999996633 434432 111111101111111233444444 599999998754
Q ss_pred e
Q 006803 573 L 573 (630)
Q Consensus 573 ~ 573 (630)
+
T Consensus 81 l 81 (486)
T PRK05784 81 L 81 (486)
T ss_pred H
Confidence 4
No 274
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=34.87 E-value=92 Score=33.45 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=46.4
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-hhHHHHhc--cccEEEEcceeE
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-NAVSYIMH--EVTRVFLGASSV 572 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sAv~~iM~--~Vd~VivGAdaI 572 (630)
.||..|.+.....++..|.+. .++|++++..|..-|..++.+ -+-..+ .| .++-.+.. ++|.|+.+.+.+
T Consensus 1 kililG~g~~~~~l~~aa~~~--G~~v~~~d~~~~~~~~~~ad~----~~~~~~-~d~~~l~~~~~~~~id~v~~~~e~v 73 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHR----SYVINM-LDGDALRAVIEREKPDYIVPEIEAI 73 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCchhhhCce----EEEcCC-CCHHHHHHHHHHhCCCEEEeccCcc
Confidence 378889888888888888775 468999999988777655421 111111 22 33444444 589888887665
Q ss_pred e
Q 006803 573 L 573 (630)
Q Consensus 573 ~ 573 (630)
.
T Consensus 74 ~ 74 (380)
T TIGR01142 74 A 74 (380)
T ss_pred C
Confidence 4
No 275
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=34.86 E-value=1.8e+02 Score=31.43 Aligned_cols=108 Identities=10% Similarity=-0.055 Sum_probs=60.2
Q ss_pred hhccCCCEEEeecChHHHHHH-HHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhcccc
Q 006803 489 TKVRDGDVLLTYGSSCVVEMI-LLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVT 563 (630)
Q Consensus 489 ~~I~dgdvILT~g~S~tV~~v-L~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd 563 (630)
.+...+.+||..|.++.|=.- +..+.++| ++|++++-++.. .... ...++. .+..| ..+..++.++|
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G--~~V~~v~r~~~~----~~~~-~~~~~~-~~~~Dl~d~~~~~~~~~~~D 87 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEG--HYIIASDWKKNE----HMSE-DMFCHE-FHLVDLRVMENCLKVTKGVD 87 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCC--CEEEEEEecccc----cccc-ccccce-EEECCCCCHHHHHHHHhCCC
Confidence 455678899999998877543 44444444 567776543211 0000 001122 22233 23444567889
Q ss_pred EEEEcceeEe------cCC---ceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 564 RVFLGASSVL------SNG---TTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 564 ~VivGAdaI~------aNG---~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.||--|-.+. .+- .-.|-.||..|.-+|+.+++.-+|.+.+
T Consensus 88 ~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 88 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred EEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 8886553221 111 1136779999999999999865554444
No 276
>PRK10537 voltage-gated potassium channel; Provisional
Probab=34.85 E-value=6.9e+02 Score=27.96 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=56.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc-----cccEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH-----EVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~-----~Vd~VivG 568 (630)
.+-|+..|++.....+++..+++|..+. |+|.. ...+....|+++.+- |..=-..+. +++.|++-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vv--VId~d-------~~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVT--VIVPL-------GLEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEE--EEECc-------hhhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEc
Confidence 5678888998888888887777665543 34422 113344567765443 433333333 67777664
Q ss_pred ceeEecCCceecccchHHHHHHHHhCC--CcEEEecccccc
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFR--VPVLICCEAYKF 607 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~--VPV~V~aet~Kf 607 (630)
.+ |..-...+++.||+.+ +.+++.+...+-
T Consensus 310 t~---------dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~ 341 (393)
T PRK10537 310 RD---------NDADNAFVVLAAKEMSSDVKTVAAVNDSKN 341 (393)
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCcEEEEECCHHH
Confidence 43 2334467889999886 456666555443
No 277
>PRK05443 polyphosphate kinase; Provisional
Probab=34.76 E-value=1e+02 Score=37.01 Aligned_cols=53 Identities=26% Similarity=0.231 Sum_probs=38.7
Q ss_pred ecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH--HHHHHHHHhCCCcEEEEcc
Q 006803 500 YGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG--QALLRRLLAKGLSCTYTHI 552 (630)
Q Consensus 500 ~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG--~~La~eL~~~GI~vTlI~D 552 (630)
.+..+.+...|..|+++|+..+|+|---.+.-+- ...+++|.++|+.+.|-..
T Consensus 376 ~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~~ 430 (691)
T PRK05443 376 TSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGVV 430 (691)
T ss_pred ecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEccC
Confidence 4555667788888899999999887655544443 4446899999999977443
No 278
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=34.73 E-value=2.4e+02 Score=30.25 Aligned_cols=109 Identities=17% Similarity=0.089 Sum_probs=66.2
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCC---------c-----hHH----HHHHHHHhC-
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPK---------H-----EGQ----ALLRRLLAK- 543 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~---------~-----eG~----~La~eL~~~- 543 (630)
++..+..+|. +..||..|..++=..+++.....|-. ++.++|..+. + -|+ .+...|.+.
T Consensus 9 ~G~eaq~kL~-~s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN 86 (286)
T cd01491 9 LGHEAMKKLQ-KSNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN 86 (286)
T ss_pred cCHHHHHHHh-cCcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC
Confidence 3444455554 46788999999877788877777765 4555554331 0 021 123556655
Q ss_pred -CCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 544 -GLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 544 -GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.+.++.+...-...++.+.|.||...|.+. . -..+.-+|+.++|||+.+.
T Consensus 87 p~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~------~---~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 87 PYVPVTVSTGPLTTDELLKFQVVVLTDASLE------D---QLKINEFCHSPGIKFISAD 137 (286)
T ss_pred CCCEEEEEeccCCHHHHhcCCEEEEecCCHH------H---HHHHHHHHHHcCCEEEEEe
Confidence 466666665433356678898877755321 1 1235567888999998853
No 279
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=34.67 E-value=1.1e+02 Score=31.70 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=47.6
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cchhHHHHhccccEEEEcceeEecCCceecc-cchHHHHHHHHhCC
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HINAVSYIMHEVTRVFLGASSVLSNGTTYSR-VGTACVAMVAHAFR 595 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NK-iGT~~lAlaAk~~~ 595 (630)
...+++|+-..|..- .+ ..||....- ..-.+-..+.++|.||+|-..++.+..-... .--+.+..+|+..+
T Consensus 27 ~~~~~~v~s~~p~~~----~~---~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~ 99 (298)
T TIGR03609 27 PGVEPTVLSNDPAET----AK---LYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFG 99 (298)
T ss_pred CCCeEEEecCChHHH----Hh---hcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcC
Confidence 445566665455432 11 225543322 1224455567899999999888876432211 11124567889999
Q ss_pred CcEEEecccc
Q 006803 596 VPVLICCEAY 605 (630)
Q Consensus 596 VPV~V~aet~ 605 (630)
+|+++++.+.
T Consensus 100 k~~~~~g~gi 109 (298)
T TIGR03609 100 KPVILWGQGI 109 (298)
T ss_pred CCEEEEeccc
Confidence 9999887654
No 280
>PRK12414 putative aminotransferase; Provisional
Probab=34.58 E-value=2.5e+02 Score=30.23 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=48.7
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHHhc-ccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYIMH-EVT 563 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~Vd 563 (630)
.++|+|.|-+..+..++......| -+|++. .|.+.+..... ...|..+..+... .+-..+. ++.
T Consensus 91 ~~i~it~g~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~~~--~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 164 (384)
T PRK12414 91 SEVTVIASASEGLYAAISALVHPG--DEVIYF--EPSFDSYAPIV--RLQGATPVAIKLSPEDFRVNWDEVAAAITPRTR 164 (384)
T ss_pred CcEEEECChHHHHHHHHHHhcCCC--CEEEEe--CCCccchHHHH--HHcCCEEEEEecCccccccCHHHHHhhcCcccE
Confidence 358888777666555554443334 346653 46665543332 3357665555321 1112221 233
Q ss_pred EEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
.|++ + ..-|.+|+ ..++-+|++|++++++
T Consensus 165 ~v~i-------~-~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 165 MIIV-------N-TPHNPSATVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred EEEE-------c-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 3332 2 34577776 4456678889987775
No 281
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=34.43 E-value=4.6e+02 Score=26.04 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=53.8
Q ss_pred CEEEeecChH------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCc--EEEEc-chhHHHHhccccEE
Q 006803 495 DVLLTYGSSC------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS--CTYTH-INAVSYIMHEVTRV 565 (630)
Q Consensus 495 dvILT~g~S~------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~--vTlI~-DsAv~~iM~~Vd~V 565 (630)
.+|++.|+-. .+...+....+.+..++++++-..+..+-...... .+.|+. ++++. ..-+..+|..+|.+
T Consensus 194 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~-~~~~~~~~v~~~g~~~~~~~~~~~adi~ 272 (365)
T cd03807 194 FLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLAL-KELGLEDKVILLGERSDVPALLNALDVF 272 (365)
T ss_pred eEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHH-HhcCCCceEEEccccccHHHHHHhCCEE
Confidence 4566666533 34444444445566788888765444332222211 244553 33332 34467788899999
Q ss_pred EEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
|+.... . |.-...+=|-.+|+|+++.
T Consensus 273 v~ps~~---e-------~~~~~~~Ea~a~g~PvI~~ 298 (365)
T cd03807 273 VLSSLS---E-------GFPNVLLEAMACGLPVVAT 298 (365)
T ss_pred EeCCcc---c-------cCCcHHHHHHhcCCCEEEc
Confidence 876443 1 1222445666789999874
No 282
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=34.42 E-value=5.1e+02 Score=26.33 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHH---cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc----cccEEEEcceeEecC
Q 006803 503 SCVVEMILLYAHE---LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH----EVTRVFLGASSVLSN 575 (630)
Q Consensus 503 S~tV~~vL~~A~e---~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~----~Vd~VivGAdaI~aN 575 (630)
+...+.++..|+. .+.++-|=|.=|. +|....++|.+.||+|...+.-.+...+- .++.|=.-..++-..
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~ 136 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDL 136 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhc
Confidence 4455666666654 2222222233333 89999999999999987766544433332 334433333333333
Q ss_pred CceecccchH---HHHHHHHhCCCcEEEeccccc
Q 006803 576 GTTYSRVGTA---CVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 576 G~V~NKiGT~---~lAlaAk~~~VPV~V~aet~K 606 (630)
|. -|.. .+.-+++.|+++.=|++.+++
T Consensus 137 g~----dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 137 GG----DGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred CC----CHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 31 1222 344456677888777777765
No 283
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.33 E-value=2.8e+02 Score=30.50 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhcc-ccEEEEcceeE
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHE-VTRVFLGASSV 572 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~-Vd~VivGAdaI 572 (630)
|.+|+..|-.+.=..+.+.+++.| .+|++.|..+... ...+.+|.+.|+.+.+-.+.. .++.+ +|.||..+- |
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~~~~-~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~g-i 78 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFSE-NPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNPG-I 78 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCCccc-hhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECCC-C
Confidence 567888877764444455555555 5788888665322 234567888898775433322 22333 677766552 2
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEE
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~ 599 (630)
-.+ ..+...|++.++||+
T Consensus 79 ~~~---------~~~~~~a~~~~i~v~ 96 (447)
T PRK02472 79 PYT---------NPMVEKALEKGIPII 96 (447)
T ss_pred CCC---------CHHHHHHHHCCCcEE
Confidence 222 234455555566555
No 284
>PRK08361 aspartate aminotransferase; Provisional
Probab=34.25 E-value=4.4e+02 Score=28.36 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=50.6
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-chh------HHHHhc---
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-INA------VSYIMH--- 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA------v~~iM~--- 560 (630)
+...++++|.|.+..+..++......| -+|++.+ |.+.+.. ..+...|+.+..+. |.. +..+..
T Consensus 91 ~~~~~i~~t~G~~~al~~~~~~l~~~g--~~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 164 (391)
T PRK08361 91 VDVDNVIVTAGAYEATYLAFESLLEEG--DEVIIPD--PAFVCYV--EDAKIAEAKPIRIPLREENEFQPDPDELLELIT 164 (391)
T ss_pred CCcccEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCcccH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 445578888877766665555443333 3566654 5554432 33344677766553 211 222222
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++- .---..|.++..-=-..|+-+|++|++.++|
T Consensus 165 ~~~~~v~i~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 165 KRTRMIVIN-YPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred cccEEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 33344332 1111123333321124466678889986554
No 285
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=34.22 E-value=1.7e+02 Score=34.06 Aligned_cols=114 Identities=22% Similarity=0.324 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHHH
Q 006803 412 LVRDLTAKISSYVSFLIECRPLSMS-MGNAIRFQKSRIAKL--------------------PLTLSETEAKAALCNDIDR 470 (630)
Q Consensus 412 ~~rdL~~~L~~~i~~L~~aRPtsVs-LgNAIrrlk~~I~~~--------------------~~~~s~~eaKe~L~e~Id~ 470 (630)
...+|.+.|+..-++..+-+|.|+. +||+++-+...++.. +...+.+|+.+...+.-+.
T Consensus 205 ~~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g~t~eea~~l~~~dp~~ 284 (546)
T PF01175_consen 205 VTDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAGLTFEEANELRAEDPEE 284 (546)
T ss_dssp EESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT--HHHHHHHHHHSHHH
T ss_pred EcCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCCCCHHHHHHHHhhCHHH
Confidence 4456777788887888888999996 799988777666542 1235678898888888887
Q ss_pred HHHHHHHHHHHHHHHHHH---hhccCCCEEEeecChH-----------------HHHHHHHHHHHcCC-ceEEEEcCCCC
Q 006803 471 FINEKIILADKVIVRHAA---TKVRDGDVLLTYGSSC-----------------VVEMILLYAHELGK-QFRVVVVDSRP 529 (630)
Q Consensus 471 fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~S~-----------------tV~~vL~~A~e~gk-~f~ViV~ESRP 529 (630)
|.+. +.+.|..|.. ++-..|..+.-|||+- -|..+|+-.+..|+ .||=+++-..|
T Consensus 285 ~~~~----v~~Sl~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWv~lSGdp 360 (546)
T PF01175_consen 285 FKER----VQESLARHVEAMLELQDRGAYFFDYGNNFRLEAFDAGVDEAFDYPSFVPAYIRPLFCEGFGPFRWVCLSGDP 360 (546)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHTT-EE-B-SSSHHHHHHHTT-TTGGGS-BHHHHTTHHHHTTT-EEEEEEETT--H
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHcCcceeecccccHHHHhhHHhhcCCCCceeeecCCCH
Confidence 7643 4555555543 4445788888888875 35666776677776 47777766665
No 286
>PRK07550 hypothetical protein; Provisional
Probab=34.09 E-value=4.2e+02 Score=28.43 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=50.7
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---h-------HHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---A-------VSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---A-------v~~iM~ 560 (630)
+...++++|.|-+..+..++......| -+|+|. + |.+-+... .+...|+.+..+... . +-..+.
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~-~-p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVTLAGAG--DEVILP-L-PWYFNHKM--WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHHhcCCC--CEEEEc-C-CCCcchHH--HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 445577888887665554444433333 344444 3 66655433 334678777665421 1 122222
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+...|++- .-=-..|.+++.-=--.|+-+|++||+++++
T Consensus 162 ~~~~~v~~~-~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 162 PRTRAIALV-TPNNPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred ccCcEEEEe-CCCCCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 23343321 0001113333322234577788999987764
No 287
>PRK09191 two-component response regulator; Provisional
Probab=34.08 E-value=3.4e+02 Score=26.89 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHH---cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcceeEecC
Q 006803 503 SCVVEMILLYAHE---LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGASSVLSN 575 (630)
Q Consensus 503 S~tV~~vL~~A~e---~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGAdaI~aN 575 (630)
-++|..-+..|.+ .....+|++++..+... ..+...|...|+.+..+.++ +...+.. ..|.||+..+ +.+
T Consensus 118 ~~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~-~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~ 194 (261)
T PRK09191 118 PAEAEALLDDARAEIARQVATRVLIIEDEPIIA-MDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LAD 194 (261)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEcCcHHHH-HHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCC
Confidence 3567666666653 23445788888765542 23456777889887744433 3333322 4889988664 222
Q ss_pred CceecccchHHHHHHHHhCCCcEEEecc
Q 006803 576 GTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 576 G~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
| --|.-.+..+.+.+++|+++++.
T Consensus 195 ~----~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 195 G----SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred C----CCHHHHHHHHHHhCCCCEEEEeC
Confidence 1 11323333444444899999866
No 288
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=34.06 E-value=74 Score=28.28 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=54.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|..||..|.......-++...+.|-+++||-.+. .. .+..| +++...- ...|..+++||+..+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~----~~~~i--~~~~~~~-~~~l~~~~lV~~at~d- 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EF----SEGLI--QLIRREF-EEDLDGADLVFAATDD- 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HH----HHTSC--EEEESS--GGGCTTESEEEE-SS--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hh----hhhHH--HHHhhhH-HHHHhhheEEEecCCC-
Confidence 46789999999988888888777776666666555 11 11222 2333322 2346677777765432
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
..-.-.+...|+.+++||.|+-
T Consensus 71 --------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 71 --------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp --------HHHHHHHHHHHHHTTSEEEETT
T ss_pred --------HHHHHHHHHHHhhCCEEEEECC
Confidence 2333568889999999999973
No 289
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=33.93 E-value=6.3e+02 Score=27.20 Aligned_cols=101 Identities=12% Similarity=0.144 Sum_probs=50.8
Q ss_pred CCEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHH--HHHHhCCCcEEEEcch--------hHHHHhc-
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALL--RRLLAKGLSCTYTHIN--------AVSYIMH- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~Ds--------Av~~iM~- 560 (630)
.++++|-|.+..+..++..... ....-+|++.+ |.+.+.... ......|+.++++... .+...+.
T Consensus 82 ~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 159 (401)
T PRK10874 82 KNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP 159 (401)
T ss_pred CEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc
Confidence 3466665555544444443311 12334677775 344343333 2235679988887421 2222222
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+..+|++ ++.-...|.+.. .-.|+-+|+.+|++|+|
T Consensus 160 ~t~lv~i-~~~~n~tG~~~~---~~~i~~l~~~~g~~~iv 195 (401)
T PRK10874 160 RTRILAL-GQMSNVTGGCPD---LARAITLAHQAGMVVMV 195 (401)
T ss_pred CcEEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 3333333 333333443321 23577789999998776
No 290
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=33.62 E-value=2e+02 Score=32.10 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=50.4
Q ss_pred CCCEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEccee
Q 006803 493 DGDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 493 dgdvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 571 (630)
++..|+.+|-.++=.. +.+.+++. ..+|++.|.++.. ...+|.+.||.+.+ .. ... .+..+|.||++.-.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~----~~~~l~~~gi~~~~-~~-~~~-~~~~~d~vv~spgi 76 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESA----VTQRLLELGAIIFI-GH-DAE-NIKDADVVVYSSAI 76 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCCh----HHHHHHHCCCEEeC-CC-CHH-HCCCCCEEEECCCC
Confidence 3456777665544334 23334444 4679999988764 23458888988765 22 222 34578888776422
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
=. +...-..|+.+++||+-
T Consensus 77 ~~----------~~~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 77 PD----------DNPELVAARELGIPVVR 95 (461)
T ss_pred CC----------CCHHHHHHHHCCCcEEe
Confidence 11 22344555666676664
No 291
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=33.61 E-value=3.9e+02 Score=28.73 Aligned_cols=95 Identities=15% Similarity=0.039 Sum_probs=48.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh-------HHHHhccccEEEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA-------VSYIMHEVTRVFL 567 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-------v~~iM~~Vd~Viv 567 (630)
.+|+|.|.+..+..++......|. +|+| + .|.+.+..... ...|+.+..+.... +..+...+ .-
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~d~~~l~~~~---~~ 164 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPGD--FALL-L-DPGYPSHAGGV--YLAGGQIYPMPLRAENDFLPVFADIPTEV---LA 164 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHHH--HhcCCEEEEEECCCccCCCCCHHHHHHhh---cc
Confidence 477788888776655554444443 4444 3 37776664433 33677776664321 11111111 01
Q ss_pred cceeEecCCceecccch-------HHHHHHHHhCCCcEE
Q 006803 568 GASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVL 599 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~ 599 (630)
+++.|+-+ .--|++|+ ..|+-+|+.|++.++
T Consensus 165 ~~k~i~l~-~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 165 QARLMVLS-YPHNPTTAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred cceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEEE
Confidence 22222222 13366666 356667888887554
No 292
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=33.30 E-value=5.8e+02 Score=27.49 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=55.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHh----------CCCcEEEEc--c-hhHHHHh-
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLA----------KGLSCTYTH--I-NAVSYIM- 559 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~----------~GI~vTlI~--D-sAv~~iM- 559 (630)
.+++|.|-+..++.+|+.+...|+. +|++.|. .+.|..+. ..+.. .+.++..+. | ..+-.++
T Consensus 105 ~v~~~~sgsea~~~al~~~~~~g~~-~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 181 (398)
T PRK03244 105 RVFFCNSGAEANEAAFKLARLTGRT-KIVAAEG--GFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD 181 (398)
T ss_pred EEEEeCchHHHHHHHHHHHHHHCCC-eEEEECC--CcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc
Confidence 5777777777888888877666653 4555553 34444322 11111 122334443 2 2333344
Q ss_pred ccccEEEEcceeEecC-Cceecccc-hHHHHHHHHhCCCcEEE
Q 006803 560 HEVTRVFLGASSVLSN-GTTYSRVG-TACVAMVAHAFRVPVLI 600 (630)
Q Consensus 560 ~~Vd~VivGAdaI~aN-G~V~NKiG-T~~lAlaAk~~~VPV~V 600 (630)
.++-.|++ +-+... |.++-.-+ -..|.-+|++|++.+++
T Consensus 182 ~~~~avii--ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 222 (398)
T PRK03244 182 DDTAAVFL--EPIQGEAGVVPPPAGYLAAAREITDRHGALLVL 222 (398)
T ss_pred CCeEEEEE--ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 24555655 334333 44444445 44677889999998876
No 293
>PRK05942 aspartate aminotransferase; Provisional
Probab=33.24 E-value=3.9e+02 Score=28.89 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=49.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-chh------HHHHh----cccc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-INA------VSYIM----HEVT 563 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA------v~~iM----~~Vd 563 (630)
.+|+|.|.+..+..++....+.|. +|+|. .|.+.+...+. ...|+.+..+. |.. +..+. +++.
T Consensus 99 ~i~vt~G~~~al~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 172 (394)
T PRK05942 99 EALPLLGSKEGLTHLALAYVNPGD--VVLVP--SPAYPAHFRGP--LIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK 172 (394)
T ss_pred eEEEccChHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHH--HHcCCEEEEeecCCccCCccCHHHHHHhccccce
Confidence 466778877766666554444443 45554 47776654332 34677776653 211 11121 2344
Q ss_pred EEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
.|++ + ..-|.+|+. .|+-+|++|++.+++
T Consensus 173 ~i~l-------~-~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 173 ILYF-------N-YPSNPTTATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred EEEE-------c-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 4444 2 234566654 466678899986554
No 294
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=33.23 E-value=4.9e+02 Score=26.34 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=62.2
Q ss_pred HHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC---------CCc----hH----HHHHHHHHhC-
Q 006803 482 VIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR---------PKH----EG----QALLRRLLAK- 543 (630)
Q Consensus 482 ~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR---------P~~----eG----~~La~eL~~~- 543 (630)
.++..+.++|. +..|+..|..++=-.++......|.. +++++|-. -.+ -| ..++++|.+.
T Consensus 17 ~~g~~~q~~L~-~~~V~ViG~GglGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln 94 (212)
T PRK08644 17 RHTPKLLEKLK-KAKVGIAGAGGLGSNIAVALARSGVG-NLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN 94 (212)
T ss_pred hcCHHHHHHHh-CCCEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC
Confidence 35666666765 45788888888766666666666764 33333321 110 12 1223556553
Q ss_pred -CCcEEEEc----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhC-CCcEEEec
Q 006803 544 -GLSCTYTH----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF-RVPVLICC 602 (630)
Q Consensus 544 -GI~vTlI~----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~-~VPV~V~a 602 (630)
.+.++.+. +..+..++..+|.||-..|.+. -.+.+.-.|..+ ++|++.++
T Consensus 95 p~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~---------~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 95 PFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAE---------TKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred CCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHH---------HHHHHHHHHHHhCCCCEEEee
Confidence 45554443 3334456778998887765443 123333444554 99999864
No 295
>PRK06141 ornithine cyclodeaminase; Validated
Probab=33.12 E-value=3.3e+02 Score=29.09 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=57.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEccee-
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASS- 571 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda- 571 (630)
+..+|+.+|........+..........+|+|.. |-......++.++.+.|+++... ++ ....+.++|.|+.....
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~-Rs~~~a~~~a~~~~~~g~~~~~~-~~-~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWG-RDPAKAEALAAELRAQGFDAEVV-TD-LEAAVRQADIISCATLST 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc-CCHHHHHHHHHHHHhcCCceEEe-CC-HHHHHhcCCEEEEeeCCC
Confidence 5678999998777666665444322334566664 44444677788887778776653 22 33455789988663321
Q ss_pred -------EecCCceecccchHH
Q 006803 572 -------VLSNGTTYSRVGTAC 586 (630)
Q Consensus 572 -------I~aNG~V~NKiGT~~ 586 (630)
.+..|.+++-+|++.
T Consensus 201 ~pvl~~~~l~~g~~i~~ig~~~ 222 (314)
T PRK06141 201 EPLVRGEWLKPGTHLDLVGNFT 222 (314)
T ss_pred CCEecHHHcCCCCEEEeeCCCC
Confidence 345788999888863
No 296
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=32.92 E-value=4.8e+02 Score=28.45 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=66.8
Q ss_pred HHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCC---------C-ch------H----HHHHHHHH
Q 006803 482 VIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRP---------K-HE------G----QALLRRLL 541 (630)
Q Consensus 482 ~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP---------~-~e------G----~~La~eL~ 541 (630)
.|+..+.++|. ...||..|..++=-.++......|.. ++.++|..- . +. | ..+.+.|.
T Consensus 13 ~~G~~~Q~~L~-~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~ 90 (339)
T PRK07688 13 PIGEEGQQKLR-EKHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLE 90 (339)
T ss_pred hcCHHHHHHhc-CCcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHH
Confidence 35666666665 46788889887655666666666764 444444321 0 00 1 11124555
Q ss_pred hC--CCcEEEEc----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 542 AK--GLSCTYTH----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 542 ~~--GI~vTlI~----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+. .|.++.+. ...+..++..+|.||.+.|.. ---+.+.-+|..++||++.++
T Consensus 91 ~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~---------~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 91 EINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNF---------ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCH---------HHHHHHHHHHHHhCCCEEEEe
Confidence 43 35554443 234456688899999987743 234578888999999998643
No 297
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=32.89 E-value=6.4e+02 Score=30.34 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=71.1
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCC-ceEEEEcCCCCCchHH-----HHHHHHHhCCCcEEEEc---chhHHHHhcccc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGK-QFRVVVVDSRPKHEGQ-----ALLRRLLAKGLSCTYTH---INAVSYIMHEVT 563 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk-~f~ViV~ESRP~~eG~-----~La~eL~~~GI~vTlI~---DsAv~~iM~~Vd 563 (630)
....|+..|-.+....++....+.|- +|+.++.|.-+.+-++ ++++. .+-+|+++.|. +..+--++...|
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 46789999999988888888888885 6888888877765552 22333 23478888887 455666677888
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.||.-+| |+ +.-....+--.|...|.|++-
T Consensus 207 iVi~vsD----dy---~~~~Lr~lN~acvkegk~~IP 236 (637)
T TIGR03693 207 WVLYVSD----NG---DIDDLHALHAFCKEEGKGFIP 236 (637)
T ss_pred EEEEECC----CC---ChHHHHHHHHHHHHcCCCeEE
Confidence 8887665 22 333577788888889955553
No 298
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=32.84 E-value=5.7e+02 Score=26.41 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=66.9
Q ss_pred HHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCc-eEEE---EcC-C---CCCc-----hHH----HHHHHHHhC-
Q 006803 482 VIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQ-FRVV---VVD-S---RPKH-----EGQ----ALLRRLLAK- 543 (630)
Q Consensus 482 ~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~-f~Vi---V~E-S---RP~~-----eG~----~La~eL~~~- 543 (630)
.++..+.++|. +..|+..|..++-..++......|.. |.++ ++| + |-.+ -|+ .++++|.+.
T Consensus 21 ~~g~~~Q~~L~-~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln 99 (245)
T PRK05690 21 GFDFDGQEKLK-AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN 99 (245)
T ss_pred hcCHHHHHHhc-CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC
Confidence 35666666665 47888899988777777777677754 4443 111 1 1111 121 123556654
Q ss_pred -CCcEEEEc----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 544 -GLSCTYTH----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 544 -GI~vTlI~----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+.++.+. ...+..+++.+|.||...|..- --+.+.-+|+.+++||+..
T Consensus 100 p~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~---------~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 100 PHIAIETINARLDDDELAALIAGHDLVLDCTDNVA---------TRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHH---------HHHHHHHHHHHhCCEEEEe
Confidence 35554443 2234556788999998887432 2356778899999999864
No 299
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=32.66 E-value=1.3e+02 Score=32.43 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=23.7
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
+.|.|+.|. .++...++|..+|||++.+++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 677777665 23456788999999999887654
No 300
>PRK15456 universal stress protein UspG; Provisional
Probab=32.56 E-value=1.3e+02 Score=27.43 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=25.3
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
++|+||+|++. -..+.. -+|+-.-. +.++-++||+|+
T Consensus 105 ~~DLIVmG~~g-~~~~~~--llGS~a~~-v~~~a~~pVLvV 141 (142)
T PRK15456 105 GADVVVIGSRN-PSISTH--LLGSNASS-VIRHANLPVLVV 141 (142)
T ss_pred CCCEEEEcCCC-CCccce--ecCccHHH-HHHcCCCCEEEe
Confidence 69999999986 222222 25765444 467788999986
No 301
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.54 E-value=2.4e+02 Score=31.28 Aligned_cols=91 Identities=12% Similarity=0.183 Sum_probs=50.7
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh--CCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA--KGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~--~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
+...+||.+|..++=..+.+.+++.| ++|++.|.++.. .+..+|.+ .||.+.+-... . ..+.++|.||+..
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~---~~~~~l~~~~~g~~~~~~~~~-~-~~~~~~d~vV~sp 76 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQG--IPFAVMDSREQP---PGLDTLAREFPDVELRCGGFD-C-ELLVQASEIIISP 76 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCC--CeEEEEeCCCCc---hhHHHHHhhcCCcEEEeCCCC-h-HHhcCCCEEEECC
Confidence 34456666665543334444455555 689999987643 23345766 38777653212 1 2346788887765
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEE
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~ 599 (630)
+|-.+ ...-..|+..++|++
T Consensus 77 -~i~~~---------~p~~~~a~~~~i~i~ 96 (448)
T PRK03803 77 -GLALD---------TPALRAAAAMGIEVI 96 (448)
T ss_pred -CCCCC---------CHHHHHHHHCCCcEE
Confidence 44332 234445556666665
No 302
>PRK08114 cystathionine beta-lyase; Provisional
Probab=32.22 E-value=4.2e+02 Score=29.63 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=51.7
Q ss_pred cCC-CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcc---hhHHHHhccccEEE
Q 006803 492 RDG-DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHI---NAVSYIMHEVTRVF 566 (630)
Q Consensus 492 ~dg-dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~D---sAv~~iM~~Vd~Vi 566 (630)
..| ..+++-+-...+..+|....+.|. +|++.. ..|..-..+. ..|.+.||.++++.- ..+...+..-+++|
T Consensus 75 Eg~~~a~~~~SGmaAi~~~~~~ll~~GD--~Vv~~~-~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV 151 (395)
T PRK08114 75 EGGAGCALYPCGAAAVANAILAFVEQGD--HVLMTG-TAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVV 151 (395)
T ss_pred hCCCeEEEEhHHHHHHHHHHHHHcCCCC--EEEEeC-CCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEE
Confidence 345 344443322334445554444444 555553 3344444555 557788999998852 33455554323333
Q ss_pred EcceeEecCCceecccch----HHHHHHHHhCC--CcEEE
Q 006803 567 LGASSVLSNGTTYSRVGT----ACVAMVAHAFR--VPVLI 600 (630)
Q Consensus 567 vGAdaI~aNG~V~NKiGT----~~lAlaAk~~~--VPV~V 600 (630)
.- + .+.|..|. ..|+-+||.++ ++++|
T Consensus 152 ~~-E------tpsNp~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 152 FL-E------SPGSITMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred EE-E------CCCCCCCEeecHHHHHHHHHHhCCCCEEEE
Confidence 21 1 23444443 34677888874 77766
No 303
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=32.11 E-value=6.2e+02 Score=26.58 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=31.0
Q ss_pred chHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 531 HEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 531 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
.+-.++++.+.+.|+++..||++.-+.+-+.+|.+|.-
T Consensus 103 ~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 103 KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 34456678899999999999998888888889998853
No 304
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=32.07 E-value=2.7e+02 Score=29.44 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=61.1
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhccccEEE
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMHEVTRVF 566 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~Vd~Vi 566 (630)
.|.+||..|-++.+- .+.+.+.+.|...+|++++..+.. ...+...+.. -.++++ .| ..+..++..+|.||
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELK-QWEMQQKFPA--PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhH-HHHHHHHhCC--CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 367889888888654 344444455544567776543322 1223333322 233333 23 45566677888888
Q ss_pred EcceeEe-c--CCc-----eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 567 LGASSVL-S--NGT-----TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 567 vGAdaI~-a--NG~-----V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
--|-... . +-+ -.|-.||..+.-+|+.+++.-+|...+
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 7553210 0 000 146679999999999999875555443
No 305
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.98 E-value=4.9e+02 Score=29.03 Aligned_cols=97 Identities=14% Similarity=0.217 Sum_probs=49.3
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-H-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-L-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGA 569 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 569 (630)
.|++-+-+..+..+|......| -+|++.. +.+.|... . ..+...|+.++++... .+-..+. ++.+|++ .
T Consensus 81 al~~~SG~~Ai~~al~all~pG--d~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~v-e 155 (427)
T PRK05994 81 ALAVASGHAAQFLVFHTLLQPG--DEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFI-E 155 (427)
T ss_pred EEEEcCHHHHHHHHHHHHhCCC--CEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEE-E
Confidence 4444333334444444444334 3555543 44545432 2 4467789988888532 3333343 3444444 1
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.---..|.++. -..|+-+|+.|+++++|
T Consensus 156 sp~NptG~v~d---l~~I~~la~~~gi~liv 183 (427)
T PRK05994 156 SIANPGGTVTD---IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred CCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 11112233332 24577788999998886
No 306
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=31.85 E-value=1.4e+02 Score=28.72 Aligned_cols=44 Identities=32% Similarity=0.249 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcC-CceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcc
Q 006803 506 VEMILLYAHELG-KQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHI 552 (630)
Q Consensus 506 V~~vL~~A~e~g-k~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~D 552 (630)
++..-..+.+.| +.++|+|-.. ..|++-+ +.|...|+.++-|.|
T Consensus 67 a~~aa~~a~e~Gi~~v~v~vkgp---G~GreaAiraL~~ag~~i~~I~D 112 (129)
T COG0100 67 AEDAAKKAKEHGIKSVEVKVKGP---GPGREAAIRALAAAGLKITRIED 112 (129)
T ss_pred HHHHHHHHHHhCccEEEEEEECC---CCcHHHHHHHHHHccceEEEEEE
Confidence 456666666767 4588888773 3467776 999999999999988
No 307
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=31.74 E-value=1.5e+02 Score=28.60 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=3.2
Q ss_pred eEEEEcCC
Q 006803 520 FRVVVVDS 527 (630)
Q Consensus 520 f~ViV~ES 527 (630)
++|||+|.
T Consensus 32 ~evivvd~ 39 (249)
T cd02525 32 IEIIVVDG 39 (249)
T ss_pred cEEEEEeC
Confidence 34444433
No 308
>PLN00175 aminotransferase family protein; Provisional
Probab=31.72 E-value=5.7e+02 Score=28.12 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=50.8
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHHh-ccccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYIM-HEVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM-~~Vd~ 564 (630)
++++|.|.+..+..++......| -.|+|.+ |.+.+...+ +...|+.+..+... .+-..+ .++..
T Consensus 117 ~I~vt~G~~~al~~~~~~l~~~g--d~Vlv~~--P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~ 190 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGLINPG--DEVILFA--PFYDSYEAT--LSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRA 190 (413)
T ss_pred CEEEeCCHHHHHHHHHHHhCCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceE
Confidence 57788887776655555433333 4566664 777665443 34468777766421 121111 23444
Q ss_pred EEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
|++- ..-|..|+. .|+-+|+.|++.+++
T Consensus 191 i~i~--------~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 191 ILIN--------TPHNPTGKMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred EEec--------CCCCCCCcCCCHHHHHHHHHHHHHcCcEEEE
Confidence 4331 234677764 467778888875543
No 309
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=31.64 E-value=2e+02 Score=27.57 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=21.0
Q ss_pred chHHHHHHHHHhCCCcEEEEcch--hHHHHhccccEEEEc
Q 006803 531 HEGQALLRRLLAKGLSCTYTHIN--AVSYIMHEVTRVFLG 568 (630)
Q Consensus 531 ~eG~~La~eL~~~GI~vTlI~Ds--Av~~iM~~Vd~VivG 568 (630)
.-|+.|+..|.+.|..++.+.-. .+...++++|.|+..
T Consensus 39 ~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsA 78 (140)
T cd05212 39 IVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVG 78 (140)
T ss_pred hHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEe
Confidence 33556666666666655555411 234456677777653
No 310
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=31.63 E-value=3.1e+02 Score=25.26 Aligned_cols=7 Identities=29% Similarity=0.695 Sum_probs=2.8
Q ss_pred eEEEEcC
Q 006803 520 FRVVVVD 526 (630)
Q Consensus 520 f~ViV~E 526 (630)
|+|+|+|
T Consensus 28 ~evivvD 34 (202)
T cd06433 28 IEYIVID 34 (202)
T ss_pred ceEEEEe
Confidence 3444443
No 311
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=31.59 E-value=1.4e+02 Score=30.29 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=20.7
Q ss_pred ecccchHHHHHHHHhCCCcEEEecccc
Q 006803 579 YSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 579 ~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.|-.||..++-+|+.+++.|+.+...+
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~~ 102 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTDY 102 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeeee
Confidence 456789999989988888877765543
No 312
>PRK08363 alanine aminotransferase; Validated
Probab=31.57 E-value=4.2e+02 Score=28.66 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=28.2
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 550 (630)
...++++|.|.+..+..++....+.| -+|++.+ |.+.+..... ...|..+..+
T Consensus 92 ~~~~i~it~G~~~al~~~~~~~~~~g--d~Vl~~~--p~y~~~~~~~--~~~g~~~v~~ 144 (398)
T PRK08363 92 TPDDVRVTAAVTEALQLIFGALLDPG--DEILIPG--PSYPPYTGLV--KFYGGVPVEY 144 (398)
T ss_pred ChhhEEEeCCHHHHHHHHHHHhCCCC--CEEEEcC--CCCcchHHHH--HHcCCEEEEe
Confidence 34467888877776665555443333 3555553 6666554332 2345544433
No 313
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=31.43 E-value=4.1e+02 Score=28.86 Aligned_cols=94 Identities=21% Similarity=0.328 Sum_probs=49.4
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc-c
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH-E 561 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-~ 561 (630)
..++|+|-|.+..+..++......|. +|++. +|.+.+... .+...|+.+.++.. ..+-..+. +
T Consensus 96 ~~~ii~t~G~t~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 169 (403)
T TIGR01265 96 ADDVVLTSGCSQAIEICIEALANPGA--NILVP--RPGFPLYDT--RAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEK 169 (403)
T ss_pred HHHEEEecChHHHHHHHHHHhCCCCC--EEEEe--CCCchhHHH--HHHHcCCEEEEecCCcccCCccCHHHHHHHhCcC
Confidence 34577777766655555554433343 45544 366554433 23456777766531 12222222 3
Q ss_pred ccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
..+|++ .|- -|..|+. .|+-+|+.+|+++++
T Consensus 170 ~~~v~i------~~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 170 TVAIVV------INP--SNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred ccEEEE------ecC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 444433 222 3677764 366678889988876
No 314
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=31.15 E-value=1.1e+02 Score=33.08 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCC-CCHHHHHH
Q 006803 384 TGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLT-LSETEAKA 462 (630)
Q Consensus 384 ~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~-~s~~eaKe 462 (630)
+|....++||+-+.+-.---...|. +.+.+-...|+.+...|+.+....-+|..++.++++...+.+.. .-.++...
T Consensus 70 SGNTGI~LA~vaa~~Gy~~iivmP~--~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~N 147 (300)
T COG0031 70 SGNTGIALAMVAAAKGYRLIIVMPE--TMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFEN 147 (300)
T ss_pred CChHHHHHHHHHHHcCCcEEEEeCC--CCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCC
Confidence 5666777777766653211111233 45667777788887777766664556888999988777665321 10101000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCC
Q 006803 463 ALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDS 527 (630)
Q Consensus 463 ~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES 527 (630)
-.+--..+ ......|.+..... -.-.|.-.|..+|+.++-+...++...++++.+|-
T Consensus 148 ----paN~~aH~--~tT~~EI~~~~~g~--~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP 204 (300)
T COG0031 148 ----PANPEAHY--ETTGPEIWQQTDGK--VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDP 204 (300)
T ss_pred ----CccHHHHH--hhhHHHHHHHhCCC--CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECC
Confidence 00000000 01112233222222 12457778999999999999888888899999984
No 315
>PLN02509 cystathionine beta-lyase
Probab=31.07 E-value=5.8e+02 Score=29.15 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcchhHHHH---hc-cccEEEEcceeEecCCceecc
Q 006803 508 MILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHINAVSYI---MH-EVTRVFLGASSVLSNGTTYSR 581 (630)
Q Consensus 508 ~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~DsAv~~i---M~-~Vd~VivGAdaI~aNG~V~NK 581 (630)
.++..+...|. +|++ +.|.+.|. .+. ..+...|+.+.++...-.-.+ +. +..+|++ . ...|.
T Consensus 162 ~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~l-e-------sPsNP 229 (464)
T PLN02509 162 SAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL-E-------SPTNP 229 (464)
T ss_pred HHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEE-E-------CCCCC
Confidence 34444444443 5665 44566664 344 446778998888743322222 22 2323332 1 24455
Q ss_pred cchH----HHHHHHHhCCCcEEE
Q 006803 582 VGTA----CVAMVAHAFRVPVLI 600 (630)
Q Consensus 582 iGT~----~lAlaAk~~~VPV~V 600 (630)
.|.. .++-+|++||++++|
T Consensus 230 tG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 230 RQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEE
Confidence 5554 366778999998886
No 316
>PRK07682 hypothetical protein; Validated
Probab=31.04 E-value=6.1e+02 Score=27.04 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=47.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc-cc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH-EV 562 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-~V 562 (630)
.++++|.|.+..+..++....+.| -+|++. .|.+.+...+.+ ..|..+..+.. ..+-..+. ++
T Consensus 82 ~~i~~t~G~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 155 (378)
T PRK07682 82 DEIIVTVGASQALDVAMRAIINPG--DEVLIV--EPSFVSYAPLVT--LAGGVPVPVATTLENEFKVQPAQIEAAITAKT 155 (378)
T ss_pred CcEEEeCChHHHHHHHHHHhCCCC--CEEEEe--CCCchhhHHHHH--HcCCEEEEeecCCccCCCCCHHHHHhhcCccc
Confidence 468888887776665555443333 345544 365554433333 34665544431 11222222 33
Q ss_pred cEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
..|++ .| .-|.+|+. .|+-+|+.|++.+++
T Consensus 156 ~~v~~------~~--p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 192 (378)
T PRK07682 156 KAILL------CS--PNNPTGAVLNKSELEEIAVIVEKHDLIVLS 192 (378)
T ss_pred EEEEE------EC--CCCCcCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 33432 12 24666654 466678888876654
No 317
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=30.87 E-value=2.4e+02 Score=30.63 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=73.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEec
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLS 574 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~a 574 (630)
+.-+.|=...-+...+.+|.+.|.+.-|+++|.=|...=.++.+++.+.| +++|=-|.-+-+.+...++=+=...|+.
T Consensus 67 ~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~kiGimp~~i~~ 144 (293)
T COG0074 67 NASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGECKIGIMPGNIYK 144 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcceeeechhhhcc
Confidence 45555656677788888899999999999999999999888889999998 6777777777777765333222256666
Q ss_pred CCc--eecccchH--HHHHHHHhCCCcEEE
Q 006803 575 NGT--TYSRVGTA--CVAMVAHAFRVPVLI 600 (630)
Q Consensus 575 NG~--V~NKiGT~--~lAlaAk~~~VPV~V 600 (630)
-|. +++|.||+ .++--=.+.+.=++.
T Consensus 145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~ 174 (293)
T COG0074 145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQST 174 (293)
T ss_pred CCceEEEecCcchHHHHHHHHHhcCCceEE
Confidence 674 57787764 444444444444443
No 318
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=30.83 E-value=5.7e+02 Score=27.16 Aligned_cols=98 Identities=18% Similarity=0.119 Sum_probs=47.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----------hHHHHhc---
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----------AVSYIMH--- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~--- 560 (630)
..+++|.|.+..+..+|......| -+|++. ++.+-+.. ..+...|+.+.++... .+...+.
T Consensus 60 ~~i~~~~g~t~al~~~l~~~~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 133 (361)
T cd06452 60 DEARVTPGAREGKFAVMHSLCEKG--DWVVVD--GLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK 133 (361)
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCC--CEEEEc--CCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHh
Confidence 356666665555444444433333 345553 23222222 2356678887776421 1222222
Q ss_pred -----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 -----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 -----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
++.+|++. +.-...|.+ .. -..++-+|+.|+++|+|=
T Consensus 134 ~~~~~~~~lv~l~-~p~n~tG~~-~~--~~~i~~~~~~~~~~vivD 175 (361)
T cd06452 134 DEFGKPPALALLT-HVDGNYGNL-HD--AKKIAKVCHEYGVPLLLN 175 (361)
T ss_pred hccCCCceEEEEE-CCCCCCeee-cc--HHHHHHHHHHcCCeEEEE
Confidence 45566663 111112222 11 235677789999988763
No 319
>PRK02948 cysteine desulfurase; Provisional
Probab=30.83 E-value=6.8e+02 Score=26.66 Aligned_cols=103 Identities=11% Similarity=0.098 Sum_probs=47.5
Q ss_pred CCCEEEeecChHHHHHHHHHHHHc--CCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcch--------hHHHHhcc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHEL--GKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHIN--------AVSYIMHE 561 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~--gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~Ds--------Av~~iM~~ 561 (630)
...+++|-|-+.....++..+... +..-+|++.+ ..+.+... ...+...|+++..+... .+...+..
T Consensus 60 ~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (381)
T PRK02948 60 EQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTP--MEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP 137 (381)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECC--cccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC
Confidence 345666655555444444433321 2223455543 22222222 24456678888887521 12222222
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
-+++|+=.+.-...|.+.. + -.|+-+|+.+++.|+|
T Consensus 138 ~~~lv~~~~~~n~tG~~~~-~--~~I~~l~~~~~~~viv 173 (381)
T PRK02948 138 DTVLASIQHANSEIGTIQP-I--AEIGALLKKYNVLFHS 173 (381)
T ss_pred CCEEEEEECCcCCcEeehh-H--HHHHHHHHHcCCEEEE
Confidence 1223322222223344433 2 2477778889987766
No 320
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=30.80 E-value=1.1e+02 Score=25.84 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=23.6
Q ss_pred HHHHhCCCcEEEEcch--hHHHHhccccEEEEcceeE
Q 006803 538 RRLLAKGLSCTYTHIN--AVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 538 ~eL~~~GI~vTlI~Ds--Av~~iM~~Vd~VivGAdaI 572 (630)
+.|.+.||+++...-. ........+|.||++.+--
T Consensus 22 ~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 22 KALKELGIEVEVSAGSILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp HHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESSG
T ss_pred HHHHhccCceEEEEecccccccccCCCcEEEEcCccc
Confidence 5666778777666554 5566667799999987643
No 321
>PRK08506 replicative DNA helicase; Provisional
Probab=30.79 E-value=3e+02 Score=31.31 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=25.9
Q ss_pred cCCCEEEee-----cChHHHHHHHHHHHHcCCceEEEEcCCCC
Q 006803 492 RDGDVLLTY-----GSSCVVEMILLYAHELGKQFRVVVVDSRP 529 (630)
Q Consensus 492 ~dgdvILT~-----g~S~tV~~vL~~A~e~gk~f~ViV~ESRP 529 (630)
+.|+.|+.- |.|..++.+...+..+|...-+|-+|-.+
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPA 232 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCH
Confidence 456777664 45557788888887777776677777544
No 322
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=30.72 E-value=3.7e+02 Score=24.80 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=57.0
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEEEcCCC---------C-Cc----hHH----HHHHHHHhC--CCcEEEEcch---
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVVVVDSR---------P-KH----EGQ----ALLRRLLAK--GLSCTYTHIN--- 553 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR---------P-~~----eG~----~La~eL~~~--GI~vTlI~Ds--- 553 (630)
||..|..++=..+++.....|.. ++.++|.. - ++ -|+ .+++.|.+. ++.++.+...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVG-KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 66677766666666666666653 33333321 1 11 122 223445543 4555555432
Q ss_pred -hHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 554 -AVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 554 -Av~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
....++...|.||.+.|.. --...+.-.|+.+++||+.+.-.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~---------~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNI---------AVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred hhHHHHhcCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEcCC
Confidence 2235567889888887652 23667888899999999987543
No 323
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=30.67 E-value=6.9e+02 Score=26.65 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=46.9
Q ss_pred CEEEeecChHHHHHHHHHHHHc-CCceEEEEcCCCCCchHHHHHHHHH--hCCCcEEEEcc--------hhHHHHhc-cc
Q 006803 495 DVLLTYGSSCVVEMILLYAHEL-GKQFRVVVVDSRPKHEGQALLRRLL--AKGLSCTYTHI--------NAVSYIMH-EV 562 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~-gk~f~ViV~ESRP~~eG~~La~eL~--~~GI~vTlI~D--------sAv~~iM~-~V 562 (630)
.+++|.+.+..++..+..+... ++.-.|++. .|.+.....++.+. ..|+.+.++.- ..+-..+. ++
T Consensus 83 ~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~--~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t 160 (398)
T cd00613 83 NASLQDEATAAAEAAGLAAIRAYHKRNKVLVP--DSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV 160 (398)
T ss_pred ceeccCchHHHHHHHHHHHHhcccCCCEEEEc--CccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe
Confidence 4555543333344444444322 223456654 33443333333332 23566655532 12222332 34
Q ss_pred cEEEEcceeEecCCceecccch-HHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGT-ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT-~~lAlaAk~~~VPV~V 600 (630)
..|++-. +-.+|.+ ..- -.|+-+|++|++.++|
T Consensus 161 ~~viv~~--~~~~G~~---~~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 161 AALMVQY--PNTLGVF---EDLIKEIADIAHSAGALVYV 194 (398)
T ss_pred EEEEEEC--CCCCcee---cchHHHHHHHHHhcCCEEEE
Confidence 4454433 2334544 243 5677788999998877
No 324
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=30.64 E-value=5.8e+02 Score=25.83 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=28.5
Q ss_pred cCCCEEE---eecChHHHHHHHHHHHHcCCceEEEEcCCCCCc
Q 006803 492 RDGDVLL---TYGSSCVVEMILLYAHELGKQFRVVVVDSRPKH 531 (630)
Q Consensus 492 ~dgdvIL---T~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~ 531 (630)
+.||+++ |-|||.-|+..+..|++. ..+||+.-++-..
T Consensus 108 ~~GDvLigISTSGNS~nVl~Ai~~Ak~~--gm~vI~ltG~~GG 148 (176)
T COG0279 108 QPGDVLIGISTSGNSKNVLKAIEAAKEK--GMTVIALTGKDGG 148 (176)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHc--CCEEEEEecCCCc
Confidence 5689865 557888999999999874 5678887766443
No 325
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=30.62 E-value=4.9e+02 Score=26.90 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHH---cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH----hccccEEEEcceeEecC
Q 006803 503 SCVVEMILLYAHE---LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI----MHEVTRVFLGASSVLSN 575 (630)
Q Consensus 503 S~tV~~vL~~A~e---~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i----M~~Vd~VivGAdaI~aN 575 (630)
+...+.++.+|++ .+.++-|=|.=|. +|.+.++.|.+.||+|..+..-++... ...++.|=....++-.+
T Consensus 62 ~~d~e~mi~eA~~l~~~~~nv~IKIP~T~---~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~ 138 (220)
T PRK12655 62 SRDAQGMVEEAKRLRNAIPGIVVKIPVTA---EGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQ 138 (220)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHc
Confidence 3456777777765 3344433344343 899999999999999987766444443 33566665555566555
Q ss_pred CceecccchHHHHH---HHHhCCCcEEEeccccc
Q 006803 576 GTTYSRVGTACVAM---VAHAFRVPVLICCEAYK 606 (630)
Q Consensus 576 G~V~NKiGT~~lAl---aAk~~~VPV~V~aet~K 606 (630)
|. -|.-.+.- +-+.|+.+.=|++-++|
T Consensus 139 g~----dg~~~i~~~~~~~~~~~~~tkILaAS~r 168 (220)
T PRK12655 139 GG----DGIRMVQELQTLLEMHAPESMVLAASFK 168 (220)
T ss_pred CC----CHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 43 23332222 22345667777777766
No 326
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.52 E-value=3.8e+02 Score=23.59 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH----hc
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI----MH 560 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i----M~ 560 (630)
+..++.|.+...|+.+|.... ..-+..+...|...|.++.++.+...... +.
T Consensus 4 ~~~~~~i~~~~~i~i~g~g~s------------------------~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 59 (139)
T cd05013 4 EKAVDLLAKARRIYIFGVGSS------------------------GLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLT 59 (139)
T ss_pred HHHHHHHHhCCEEEEEEcCch------------------------HHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCC
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
.-|++|+ |...|.. .-+..++-.|+.+++++++++.
T Consensus 60 ~~~~~i~----iS~~g~~---~~~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 60 PGDVVIA----ISFSGET---KETVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred CCCEEEE----EeCCCCC---HHHHHHHHHHHHcCCeEEEEcC
No 327
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=30.35 E-value=82 Score=35.27 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=69.6
Q ss_pred EEEeecChH--HH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCc-EEEEcchh---------HHHHhcc
Q 006803 496 VLLTYGSSC--VV-EMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLS-CTYTHINA---------VSYIMHE 561 (630)
Q Consensus 496 vILT~g~S~--tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~-vTlI~DsA---------v~~iM~~ 561 (630)
.|||.--++ .+ +.-|..+.++...|..+|+=|.-.+. ..|. .-|...||. -.|..+.+ .+.+|..
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d-~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~ 83 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRD-YEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEG 83 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEeccccc-HHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHH
Confidence 466654443 22 34556666666668888887765542 1344 556667887 67766655 4555555
Q ss_pred ccEEEE--cceeEecCCceecccchHHHHHHHHhCCCcEE-Eecccccccccc
Q 006803 562 VTRVFL--GASSVLSNGTTYSRVGTACVAMVAHAFRVPVL-ICCEAYKFHERV 611 (630)
Q Consensus 562 Vd~Viv--GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~-V~aet~Kf~~r~ 611 (630)
++.|+. --|.|+--||.. =|+..|++|...+|||- |.+..-.|+..+
T Consensus 84 ~~~vl~~~kPD~VlVhGDT~---t~lA~alaa~~~~IpV~HvEAGlRt~~~~~ 133 (383)
T COG0381 84 LSKVLEEEKPDLVLVHGDTN---TTLAGALAAFYLKIPVGHVEAGLRTGDLYF 133 (383)
T ss_pred HHHHHHhhCCCEEEEeCCcc---hHHHHHHHHHHhCCceEEEecccccCCCCC
Confidence 544443 445555566653 35566899999999998 777776666553
No 328
>PRK08636 aspartate aminotransferase; Provisional
Probab=30.32 E-value=5.4e+02 Score=27.93 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=54.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc---ch-----------hHHHHhc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH---IN-----------AVSYIMH 560 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~---Ds-----------Av~~iM~ 560 (630)
.+++|.|....+..++....+.|. .|+| + .|.+.+...+..+ .|+.+..+. |. .+...++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPGD--VAIV-P-DPAYPIHSQAFIL--AGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHHHHh--cCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 588999988877666665444342 4444 4 3888777655443 677766553 22 1122222
Q ss_pred ----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 ----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..+++- .-=-..|.++..-=-..|+-+|++|++.+++
T Consensus 171 ~~~~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 171 ESSPKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred hccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 33344331 0012224444443345677788999987774
No 329
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=30.20 E-value=6.9e+02 Score=27.01 Aligned_cols=96 Identities=11% Similarity=0.233 Sum_probs=51.0
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGA 569 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 569 (630)
.|+|-+-+..+.. +..+...|. +|++.+ |.+.|. .+. ..+...|+.++++... .+-..+. +..+|++-
T Consensus 70 ~~~~~sG~~ai~~-~~~ll~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le- 143 (366)
T PRK08247 70 GFACSSGMAAIQL-VMSLFRSGD--ELIVSS--DLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIE- 143 (366)
T ss_pred EEEEcCHHHHHHH-HHHHhCCCC--EEEEec--CCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEE-
Confidence 4555544444443 334444443 566543 555553 233 4566789999887542 2333332 34455441
Q ss_pred eeEecCCceecccch----HHHHHHHHhCCCcEEEecccc
Q 006803 570 SSVLSNGTTYSRVGT----ACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 570 daI~aNG~V~NKiGT----~~lAlaAk~~~VPV~V~aet~ 605 (630)
...|..|+ ..|+-+|+.|+++++|= ++|
T Consensus 144 -------~P~NP~~~~~dl~~I~~la~~~g~~lIvD-~t~ 175 (366)
T PRK08247 144 -------TPTNPLMQETDIAAIAKIAKKHGLLLIVD-NTF 175 (366)
T ss_pred -------CCCCCCCcHHHHHHHHHHHHHcCCEEEEE-CCC
Confidence 12244444 44777889999877653 444
No 330
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=30.14 E-value=1.2e+02 Score=36.21 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCceEEEEcCCCCCc-hH--HHHHHHHHhCCCcEEEEc
Q 006803 505 VVEMILLYAHELGKQFRVVVVDSRPKH-EG--QALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 505 tV~~vL~~A~e~gk~f~ViV~ESRP~~-eG--~~La~eL~~~GI~vTlI~ 551 (630)
-+...|.+|+++||+..|.| |=.-++ |- ...|+.|.++|+.|.|-.
T Consensus 385 pIV~ALi~AA~nGKqVtvlV-ELkARFDEE~NI~WAk~LE~AGvhVvyG~ 433 (696)
T COG0855 385 PIVRALIDAAENGKQVTVLV-ELKARFDEEANIHWAKRLERAGVHVVYGV 433 (696)
T ss_pred HHHHHHHHHHHcCCeEEEEE-EEhhhcChhhhhHHHHHHHhCCcEEEecc
Confidence 44556666778899888765 433333 22 344789999999998854
No 331
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.95 E-value=1.8e+02 Score=31.64 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=37.4
Q ss_pred EEEeecCh-HHHHHHHHHHHHcCCceEEEEcCCCCCchH--HHHHHHHHhCCCcEEEEcchh
Q 006803 496 VLLTYGSS-CVVEMILLYAHELGKQFRVVVVDSRPKHEG--QALLRRLLAKGLSCTYTHINA 554 (630)
Q Consensus 496 vILT~g~S-~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG--~~La~eL~~~GI~vTlI~DsA 554 (630)
.|.|||+- ..++..+..|++.|....+.+..+...-.. ..+++.+.+.|.++.||+|++
T Consensus 105 ri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 166 (333)
T TIGR03217 105 RVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSA 166 (333)
T ss_pred EEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCC
Confidence 36666543 356677777777777666666665433333 334466777788888888854
No 332
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=29.85 E-value=4.1e+02 Score=27.31 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=58.5
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CC--CcEEEE-c----chhHHHHhccccE
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KG--LSCTYT-H----INAVSYIMHEVTR 564 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~G--I~vTlI-~----DsAv~~iM~~Vd~ 564 (630)
|.+||..|-++.+= .++..+.++|.. |+++.-++.... .+ ..|.. .+ -.++++ . ...+..++..+|.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~--V~~~~r~~~~~~-~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 79 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYT--VKATVRDPNDPK-KT-EHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEG 79 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCE--EEEEEcCCCchh-hH-HHHHhccCCCCceEEEeccccCcchHHHHHcCCCE
Confidence 56899999888664 444555566654 444432222211 11 11211 11 133333 2 2456777888999
Q ss_pred EEEcceeEec---CC--c--eecccchHHHHHHHHhC-CCcEEEeccc
Q 006803 565 VFLGASSVLS---NG--T--TYSRVGTACVAMVAHAF-RVPVLICCEA 604 (630)
Q Consensus 565 VivGAdaI~a---NG--~--V~NKiGT~~lAlaAk~~-~VPV~V~aet 604 (630)
||--|-.+.. +. . -.|-.||..+.-+|+.+ ++.-+|.+.+
T Consensus 80 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS 127 (322)
T PLN02662 80 VFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSS 127 (322)
T ss_pred EEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 9887754322 11 1 13678999888877776 7754444433
No 333
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=29.66 E-value=3.8e+02 Score=23.40 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=55.3
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEE-EcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc--cccEEEEcceeE
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVV-VVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH--EVTRVFLGASSV 572 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaI 572 (630)
.|...|........+....+....++|. |++..|.. .-.-..+.|++ .++| .--++. ++|.|++..-.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~----~~~~~~~~~~~--~~~~--~~~ll~~~~~D~V~I~tp~- 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPER----AEAFAEKYGIP--VYTD--LEELLADEDVDAVIIATPP- 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHH----HHHHHHHTTSE--EESS--HHHHHHHTTESEEEEESSG-
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHH----HHHHHHHhccc--chhH--HHHHHHhhcCCEEEEecCC-
Confidence 4667777666666666666666777754 66765432 22225567888 4554 333333 79999886432
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
---+.+++.|-.+|++|+|
T Consensus 73 ---------~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 73 ---------SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp ---------GGHHHHHHHHHHTTSEEEE
T ss_pred ---------cchHHHHHHHHHcCCEEEE
Confidence 2256788888889997776
No 334
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=29.39 E-value=1.6e+02 Score=24.85 Aligned_cols=77 Identities=12% Similarity=0.210 Sum_probs=43.4
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCC-cEEEEcchhH-HHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHh-CCC
Q 006803 522 VVVVDSRPKHEGQALLRRLLAKGL-SCTYTHINAV-SYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA-FRV 596 (630)
Q Consensus 522 ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~DsAv-~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~-~~V 596 (630)
|+|+|..|... ..+.+.|...|+ .|+...+..- -..+. ..|.+|+.. .+-..-|...+..+.+. +++
T Consensus 1 Ilivd~~~~~~-~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~-------~~~~~~~~~~~~~i~~~~~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIR-ELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDL-------ELPDGDGLELLEQIRQINPSI 72 (112)
T ss_dssp EEEEESSHHHH-HHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEES-------SSSSSBHHHHHHHHHHHTTTS
T ss_pred cEEEECCHHHH-HHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEe-------eeccccccccccccccccccc
Confidence 34555554432 223466667888 7776665322 22223 467777663 33334555555555554 489
Q ss_pred cEEEeccccc
Q 006803 597 PVLICCEAYK 606 (630)
Q Consensus 597 PV~V~aet~K 606 (630)
|+++++....
T Consensus 73 ~ii~~t~~~~ 82 (112)
T PF00072_consen 73 PIIVVTDEDD 82 (112)
T ss_dssp EEEEEESSTS
T ss_pred cEEEecCCCC
Confidence 9999986544
No 335
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=29.14 E-value=5.3e+02 Score=24.91 Aligned_cols=94 Identities=24% Similarity=0.341 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcchHH-HHHHHHHHHHHH--HHhcC-chhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006803 389 RCIAMLRAFQEVINDYSTPPGKTLVR-DLTAKISSYVSF--LIECR-PLSMSMGNAIRFQKSRIAKLPLTLSETEAKAAL 464 (630)
Q Consensus 389 rala~L~alr~vI~d~~~p~~~~~~r-dL~~~L~~~i~~--L~~aR-PtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L 464 (630)
..++...+-.=+.+||...++....+ ......+....- |..|| |+-.+|.|-++.+....... + ..+..
T Consensus 28 v~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i~~~l~~~l~~~~~~----~---~~~~~ 100 (147)
T PF12842_consen 28 VTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESIQNNLRSLLSQLNGS----T---EQELP 100 (147)
T ss_pred HHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----c---hhhhH
Confidence 34444444444556887755432222 111112222222 34677 88888888887775432111 1 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 006803 465 CNDIDRFINEKIILADKVIVRHAAT 489 (630)
Q Consensus 465 ~e~Id~fi~E~i~~A~~~Ia~~a~~ 489 (630)
.+.+...+++.++.++..|-+.+.+
T Consensus 101 e~~i~~~~~dNlel~~~~Iek~a~e 125 (147)
T PF12842_consen 101 EQAIQQIVNDNLELACAFIEKAAME 125 (147)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444445555555544444443
No 336
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=29.02 E-value=1.3e+02 Score=28.66 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=18.4
Q ss_pred HhhccCCCEEEeecChH---HHHHHHHHHHH
Q 006803 488 ATKVRDGDVLLTYGSSC---VVEMILLYAHE 515 (630)
Q Consensus 488 ~~~I~dgdvILT~g~S~---tV~~vL~~A~e 515 (630)
...+..+|+++.+++|+ .+..+++.|++
T Consensus 74 ~~~~~~~D~~i~iS~sG~t~~~~~~~~~a~~ 104 (154)
T TIGR00441 74 EALGQKGDVLLGISTSGNSKNVLKAIEAAKD 104 (154)
T ss_pred HHhCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567889999998887 34444554444
No 337
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.95 E-value=2.5e+02 Score=27.08 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=51.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|..||..|...+....++...+.|..++|| .|.. ..+|.+.+ .++++...--..-+...|+||...|-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI----sp~~-----~~~l~~l~-~i~~~~~~~~~~dl~~a~lViaaT~d- 80 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV----SPEI-----CKEMKELP-YITWKQKTFSNDDIKDAHLIYAATNQ- 80 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE----cCcc-----CHHHHhcc-CcEEEecccChhcCCCceEEEECCCC-
Confidence 5789999999999888888777777766666 1332 22222222 22333221112224456766664432
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.-+| ..++.+|+.+ ++|.++.
T Consensus 81 ----~e~N----~~i~~~a~~~-~~vn~~d 101 (157)
T PRK06719 81 ----HAVN----MMVKQAAHDF-QWVNVVS 101 (157)
T ss_pred ----HHHH----HHHHHHHHHC-CcEEECC
Confidence 2233 5677888874 6877654
No 338
>PRK06767 methionine gamma-lyase; Provisional
Probab=28.94 E-value=6.4e+02 Score=27.54 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=46.6
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHHH-HHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALLR-RLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La~-eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
+.|++-+-+..+..+|....+.| -+|++.+ |.+.+. .+.. .+...|++++++.. ..+-..+. +..+|++-
T Consensus 78 ~al~~~sG~~Ai~~~l~al~~~G--d~Vv~~~--~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~le 153 (386)
T PRK06767 78 EALAFGSGMAAISATLIGFLKAG--DHIICSN--GLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVE 153 (386)
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEcC--CcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEe
Confidence 44555333333333333333333 3566643 444332 2232 23456888877632 22322332 44455442
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.---..|.+.. --.|+-+|++++++|+|
T Consensus 154 -sp~NptG~v~d---l~~I~~la~~~g~~viv 181 (386)
T PRK06767 154 -TPINPTMKLID---LKQVIRVAKRNGLLVIV 181 (386)
T ss_pred -CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 11112343333 24677788999988776
No 339
>PRK09411 carbamate kinase; Reviewed
Probab=28.92 E-value=1.8e+02 Score=31.58 Aligned_cols=61 Identities=20% Similarity=0.149 Sum_probs=39.9
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHHcC----CceEEEEcCCCCCchHHHHHHHHHhCCCc
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHELG----KQFRVVVVDSRPKHEGQALLRRLLAKGLS 546 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~g----k~f~ViV~ESRP~~eG~~La~eL~~~GI~ 546 (630)
++.++++.+..+|+||||..-|-.+++...... -.+.|.+.+|- .+=|..|-.+|.+.|++
T Consensus 34 ~~ia~l~~~~~~vitHGNGPQVG~l~~~~~~~~~~~~~pld~~~a~sq-G~iGy~l~q~l~~~~~~ 98 (297)
T PRK09411 34 PALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQ-GMIGYMLAQSLSAQPQM 98 (297)
T ss_pred HHHHHHHHcCCEEEEeCCccHHHHHHHHHHhhcCCCCCCchhhhhhcc-cHHHHHHHHHHHHcCCC
Confidence 333455555789999999998876666532211 23555555553 34478888999998875
No 340
>PRK07340 ornithine cyclodeaminase; Validated
Probab=28.90 E-value=3.5e+02 Score=28.90 Aligned_cols=89 Identities=18% Similarity=0.057 Sum_probs=55.4
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc---
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA--- 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA--- 569 (630)
+..+|+.+|........+.........-+|+|..-.+ ..-..++.++...|+++. .++ ...++.++|.|+...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~-~~a~~~a~~~~~~~~~~~--~~~-~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTA-ASAAAFCAHARALGPTAE--PLD-GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCH-HHHHHHHHHHHhcCCeeE--ECC-HHHHhhcCCEEEEccCCC
Confidence 5678999998887776666554322223466664433 335567788877777766 232 233456888887521
Q ss_pred ----eeEecCCceecccchH
Q 006803 570 ----SSVLSNGTTYSRVGTA 585 (630)
Q Consensus 570 ----daI~aNG~V~NKiGT~ 585 (630)
+..+.-|..+|-||++
T Consensus 200 ~Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 200 TPVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred CceeCccCCCCCEEEecCCC
Confidence 1135778888888865
No 341
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=28.88 E-value=2.3e+02 Score=30.15 Aligned_cols=110 Identities=13% Similarity=-0.010 Sum_probs=61.6
Q ss_pred CCCEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHH---hCCC-cEEEEc-c----hhHHHHhccc
Q 006803 493 DGDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLL---AKGL-SCTYTH-I----NAVSYIMHEV 562 (630)
Q Consensus 493 dgdvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~---~~GI-~vTlI~-D----sAv~~iM~~V 562 (630)
.+..||..|-++.+=. ++....+.| .+|++++-++......+..... ...+ .++++. | ..+..++..+
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 4568999998886643 333444444 5788887554322222211111 1100 122222 3 4566778889
Q ss_pred cEEEEcceeEe---cCC-----ceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 563 TRVFLGASSVL---SNG-----TTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 563 d~VivGAdaI~---aNG-----~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|.||--|-... .+. .-.|-.||..+.-+|+++++.=+|.+.+
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 98887664321 111 1267789999999999999854443333
No 342
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=28.87 E-value=6.9e+02 Score=26.33 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=47.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHH---c-CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-----hHHHH---hc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHE---L-GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-----AVSYI---MH 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e---~-gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-----Av~~i---M~ 560 (630)
+...|+|.|.+.....++..+.. . +..-+|++.+. .+-+ +.......|+.+..+... -+..+ +.
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~--~h~~--~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~ 151 (373)
T TIGR03812 76 DAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPES--AHFS--FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLID 151 (373)
T ss_pred CCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCc--chHH--HHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHh
Confidence 34567777755544444333221 1 22346777653 2222 223344568888777521 12222 22
Q ss_pred ccc--EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVT--RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd--~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+-+ .|++.. -...|.+. . --.|+-+|++|+++++|
T Consensus 152 ~~~~~vv~~~~--~~~tG~~~-~--~~~i~~l~~~~~~~liv 188 (373)
T TIGR03812 152 DNTIGIVGIAG--TTELGQID-D--IEELSKIALENGIYLHV 188 (373)
T ss_pred hCcEEEEEECC--CCCCCccC-C--HHHHHHHHHHcCCeEEE
Confidence 212 222221 12344332 2 23577788999998876
No 343
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=28.84 E-value=5.7e+02 Score=27.02 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCCEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-c----hhHHHHhccccEEE
Q 006803 493 DGDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-I----NAVSYIMHEVTRVF 566 (630)
Q Consensus 493 dgdvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D----sAv~~iM~~Vd~Vi 566 (630)
.+.+||..|-++.+-. +++...++| .+|+++.-.+ .....+...+.. +-.++++. | ..+..++.++|.||
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~-~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDP-AKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCh-HHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 4678999998886644 444444555 5677664332 223333333332 33454443 2 34556677899888
Q ss_pred EcceeEecCC-----ce-----ec-----ccchHHHHHHHHhCC-CcEEEeccc
Q 006803 567 LGASSVLSNG-----TT-----YS-----RVGTACVAMVAHAFR-VPVLICCEA 604 (630)
Q Consensus 567 vGAdaI~aNG-----~V-----~N-----KiGT~~lAlaAk~~~-VPV~V~aet 604 (630)
--|-..-.+. +. .| -.||..+.-+|+.++ +.-+|...+
T Consensus 85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS 138 (353)
T PLN02896 85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSS 138 (353)
T ss_pred ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEec
Confidence 8764322111 00 12 268888888877664 666665544
No 344
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=28.70 E-value=2.1e+02 Score=32.43 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=55.4
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
.+..||.+|.+.+...+.++.++.|. +.+.+=.|-+--...|+.+|. ..+++.+-+..++.++|.||.+.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV--KKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISST 246 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEec
Confidence 36789999999999999998887653 555555777777788887775 67778788888888999998874
No 345
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=28.39 E-value=5.8e+02 Score=25.45 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=63.9
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC---------CCc-------hHH----HHHHHHHh
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR---------PKH-------EGQ----ALLRRLLA 542 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR---------P~~-------eG~----~La~eL~~ 542 (630)
++..+.++|.+ ..||..|.+++-..+++.....|-. +++++|.. -.+ -|+ .++..|.+
T Consensus 9 ~G~~~q~~L~~-s~VlviG~gglGsevak~L~~~GVg-~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~ 86 (198)
T cd01485 9 WGDEAQNKLRS-AKVLIIGAGALGAEIAKNLVLAGID-SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQE 86 (198)
T ss_pred cCHHHHHHHhh-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHH
Confidence 44455556654 7788899999777777777777765 23333311 100 121 12345655
Q ss_pred CC--CcEEEEcc------hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 543 KG--LSCTYTHI------NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 543 ~G--I~vTlI~D------sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.+ +.++.+.. .-...++...|.||...|. ..--..+.-.|++++|||+.+.
T Consensus 87 lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~---------~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 87 LNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN---------YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC---------HHHHHHHHHHHHHcCCCEEEEE
Confidence 43 55555432 2234556788888765442 2233456678999999999863
No 346
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=28.39 E-value=5.8e+02 Score=26.76 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=51.7
Q ss_pred CCEEEeecChHH---HHHHHHHHHH-cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-hhHHHHhccccEEEEc
Q 006803 494 GDVLLTYGSSCV---VEMILLYAHE-LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-NAVSYIMHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~t---V~~vL~~A~e-~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sAv~~iM~~Vd~VivG 568 (630)
.-+|+.++.+.- ...+|..|.+ ......+++.-.+... ..+...+. .|+.+.++-- ..+..+|..+|.+|+.
T Consensus 183 ~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~--~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~ 259 (357)
T PRK00726 183 KPTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL--EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICR 259 (357)
T ss_pred CeEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH--HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEEC
Confidence 346888887653 2334434432 2222233333222222 34445555 8887544431 3577888999999863
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
+ | + ...+=|-.+|+|++++..
T Consensus 260 ~------g-------~-~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 260 A------G-------A-STVAELAAAGLPAILVPL 280 (357)
T ss_pred C------C-------H-HHHHHHHHhCCCEEEecC
Confidence 2 2 1 234466678999998764
No 347
>PRK14851 hypothetical protein; Provisional
Probab=28.30 E-value=5.1e+02 Score=31.24 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=63.3
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCc-eEEE----EcCC---CCCc--h---HH----HHHHHHHhC--
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQ-FRVV----VVDS---RPKH--E---GQ----ALLRRLLAK-- 543 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~-f~Vi----V~ES---RP~~--e---G~----~La~eL~~~-- 543 (630)
|+..+.++|. +..|+..|.+++=-.++......|.. |+++ |.+| |-.+ . |+ .++..|.+.
T Consensus 33 ~g~e~Q~kL~-~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP 111 (679)
T PRK14851 33 FTPGEQERLA-EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINP 111 (679)
T ss_pred cCHHHHHHHh-cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCC
Confidence 4455556664 58899999988655566665566753 3332 1112 3221 1 21 123555544
Q ss_pred CCcEEEEcc----hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 544 GLSCTYTHI----NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 544 GI~vTlI~D----sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+++++.+.+ ..+..++..+|.||-+.|... + .+- ..+.-.|+.++||||.+.
T Consensus 112 ~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~----~--~~r-~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 112 FLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQ----F--EIR-RTLFNMAREKGIPVITAG 167 (679)
T ss_pred CCeEEEEecCCChHHHHHHHhCCCEEEECCCCCc----H--HHH-HHHHHHHHHCCCCEEEee
Confidence 466665542 345667788999887776421 0 001 134446888999999765
No 348
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=28.23 E-value=1.4e+02 Score=32.76 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=38.8
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc--cccEEEEcceeE
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH--EVTRVFLGASSV 572 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaI 572 (630)
.||.+|..+.-..+...+++.+....||+ -|.+.|..+.-+ .+...+.....+-.+.+ ++|.|+.|.+..
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i~~---~~~n~g~~~~~~----~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 73 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKVYV---APGNAGTALLAE----NVVIDVTDIEALVAFAKEEGIDLTVVGPEAP 73 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEE---eCCCHHHHhhcc----ccCCCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 68999988876666666666543346666 455666544311 12211122223333333 488888877644
No 349
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.23 E-value=1.2e+02 Score=27.54 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=62.3
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEcchhHHHHhccccEEEEcceeEec
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTHINAVSYIMHEVTRVFLGASSVLS 574 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~a 574 (630)
.|...|-++.+=.-|.+...+...|.+..+-++..-.|..+...... .++ ..+.....-...+..+|.||+..+.=
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dvvf~a~~~~-- 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGF-EDLSVEDADPEELSDVDVVFLALPHG-- 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTT-EEEBEEETSGHHHTTESEEEE-SCHH--
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccc-cceeEeecchhHhhcCCEEEecCchh--
Confidence 36677777766545554444467888555544444667766644432 233 22222223333348899998864321
Q ss_pred CCceecccchHHHHHHHHhCCCcEEEecccccccccccCC
Q 006803 575 NGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLD 614 (630)
Q Consensus 575 NG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~d 614 (630)
-+..++-.+...|+.|+=....|.|++.++++
T Consensus 78 --------~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~ 109 (121)
T PF01118_consen 78 --------ASKELAPKLLKAGIKVIDLSGDFRLDDDVPYG 109 (121)
T ss_dssp --------HHHHHHHHHHHTTSEEEESSSTTTTSTTSEEE
T ss_pred --------HHHHHHHHHhhCCcEEEeCCHHHhCCCCCCEE
Confidence 12334444456788888889999888766544
No 350
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=28.20 E-value=8.2e+02 Score=27.91 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCc
Q 006803 467 DIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS 546 (630)
Q Consensus 467 ~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~ 546 (630)
.++.||++......+.|.. ..+++ .|..|..++....+..+.+-+.+.|-...++++......+=..+.+.| .. .
T Consensus 299 ~~e~~i~~e~~~~~~~l~~-~~~~l-~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~-~~--~ 373 (475)
T PRK14478 299 RTEALIAEEEAKAWAALEP-YRPRL-EGKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELM-GP--D 373 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHh-CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc-CC--C
Confidence 3344444333333334433 23444 467777777766666666666677877666666554332212222333 22 3
Q ss_pred EEEEcch---hHHHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 547 CTYTHIN---AVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 547 vTlI~Ds---Av~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+.++.|. .+..++. ++|++|-+. .-.-+|+..+||++..
T Consensus 374 ~~v~~d~~~~e~~~~i~~~~pDliig~s----------------~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 374 AHMIDDANPRELYKMLKEAKADIMLSGG----------------RSQFIALKAGMPWLDI 417 (475)
T ss_pred cEEEeCCCHHHHHHHHhhcCCCEEEecC----------------chhhhhhhcCCCEEEc
Confidence 4455553 2333333 355554431 1235677788888744
No 351
>PRK07454 short chain dehydrogenase; Provisional
Probab=28.04 E-value=4.5e+02 Score=25.77 Aligned_cols=74 Identities=18% Similarity=0.095 Sum_probs=41.8
Q ss_pred CCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc------
Q 006803 493 DGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------ 560 (630)
Q Consensus 493 dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 560 (630)
++.+||..|.++-+ ..+.+.+.++|- +|+++. |.......+...+.+.+-.+.++ +| ..+..++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVA-RSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEe-CCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45577777766543 555666666664 788775 43334455556666655555433 34 23333333
Q ss_pred -cccEEEEcc
Q 006803 561 -EVTRVFLGA 569 (630)
Q Consensus 561 -~Vd~VivGA 569 (630)
.+|.||-.|
T Consensus 82 ~~id~lv~~a 91 (241)
T PRK07454 82 GCPDVLINNA 91 (241)
T ss_pred CCCCEEEECC
Confidence 478887655
No 352
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=27.97 E-value=2.1e+02 Score=31.78 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=70.0
Q ss_pred CCEEEee--cChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH----HHHHHHh-C-CCcEEEEcchh--HHHHhcccc
Q 006803 494 GDVLLTY--GSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA----LLRRLLA-K-GLSCTYTHINA--VSYIMHEVT 563 (630)
Q Consensus 494 gdvILT~--g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~----La~eL~~-~-GI~vTlI~DsA--v~~iM~~Vd 563 (630)
+--|.-+ -+..++..+|+.|-+.+..+-+-+.++.=.+-|.. |++.+.+ . .|||.+-+|.+ ...++.-++
T Consensus 15 ~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~ 94 (347)
T TIGR01521 15 GYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQ 94 (347)
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH
Confidence 4445443 35557888888887766554444444322223333 3455554 3 39999999976 455554444
Q ss_pred EEEEcceeEecCCcee-----------cccchHHHHHHHHhCCCcEE
Q 006803 564 RVFLGASSVLSNGTTY-----------SRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~-----------NKiGT~~lAlaAk~~~VPV~ 599 (630)
.|-.+|+-||+-. |--=|-.++-.||.+||.|=
T Consensus 95 ---~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE 138 (347)
T TIGR01521 95 ---LGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE 138 (347)
T ss_pred ---cCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4999999999998 88889999999999999854
No 353
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.92 E-value=3.5e+02 Score=30.58 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=39.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
+..|+.+|..+.=..+.+.++++| ++|++.|.++.... ...|.+.|+.+.+....-....+..+|.||+..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~---~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPN---LAALRAELPDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchh---HHHHHhhcCCcEEEeCCCchhHhcCCCEEEECC
Confidence 445555543333234555555556 68999998875432 345777755444433211123345788887754
No 354
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=27.89 E-value=1.4e+02 Score=26.88 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=32.5
Q ss_pred CCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 544 GLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 544 GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|+++.++.|......+.+=|.+|+ |...|.. .-+..++-.|+++++|+++++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~dl~I~----iS~SG~t---~e~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 26 KIPVYVVKDYTLPAFVDRKTLVIA----VSYSGNT---EETLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCEEEecCccCcCCCCCCCEEEE----EECCCCC---HHHHHHHHHHHHCCCEEEEEeCC
Confidence 777777766443333444455543 3334422 23455667789999999988753
No 355
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.81 E-value=4.2e+02 Score=29.39 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=51.8
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh--CCCcEEEEcchhHHHHhccccEEEEccee
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA--KGLSCTYTHINAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~--~GI~vTlI~DsAv~~iM~~Vd~VivGAda 571 (630)
+..|+.+|..++=..+.+.+.+.| .+|++.|..+... ...+|.+ .||.+.+-.... .+....|.||+....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g--~~v~~~d~~~~~~---~~~~l~~~~~gi~~~~g~~~~--~~~~~~d~vv~spgi 77 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG--AEVAAYDAELKPE---RVAQIGKMFDGLVFYTGRLKD--ALDNGFDILALSPGI 77 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCch---hHHHHhhccCCcEEEeCCCCH--HHHhCCCEEEECCCC
Confidence 567888887765555555555555 5788888777642 2334655 477665433222 244578888876422
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEE
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~ 599 (630)
=- +...-..|+++++|++
T Consensus 78 ~~----------~~p~~~~a~~~~i~v~ 95 (445)
T PRK04308 78 SE----------RQPDIEAFKQNGGRVL 95 (445)
T ss_pred CC----------CCHHHHHHHHcCCcEE
Confidence 11 2334555566666665
No 356
>PRK01362 putative translaldolase; Provisional
Probab=27.77 E-value=5.2e+02 Score=26.57 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHH---cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCcee
Q 006803 503 SCVVEMILLYAHE---LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTY 579 (630)
Q Consensus 503 S~tV~~vL~~A~e---~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~ 579 (630)
+.....++.+|++ .+.++-|=|.=|. +|...++.|.+.||+|..+..-++...+--+. .||+-|..-=+=+
T Consensus 60 ~~d~~~m~~~a~~l~~~~~~i~iKIP~T~---~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yispyvgRi 133 (214)
T PRK01362 60 ALDAEGMIKEGRELAKIAPNVVVKIPMTP---EGLKAVKALSKEGIKTNVTLIFSANQALLAAK---AGATYVSPFVGRL 133 (214)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceEEeeecCHHHHHHHHh---cCCcEEEeecchH
Confidence 3456677777664 3344333333333 89888999999999999887766655544211 2666554321111
Q ss_pred cccchHHHHH------HHHhCCCcEEEeccccc
Q 006803 580 SRVGTACVAM------VAHAFRVPVLICCEAYK 606 (630)
Q Consensus 580 NKiGT~~lAl------aAk~~~VPV~V~aet~K 606 (630)
+..|--.+.+ +-+.|+.+.-|++-++|
T Consensus 134 ~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r 166 (214)
T PRK01362 134 DDIGTDGMELIEDIREIYDNYGFDTEIIAASVR 166 (214)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecC
Confidence 1122222222 22345656666666665
No 357
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=27.75 E-value=2.8e+02 Score=28.97 Aligned_cols=76 Identities=22% Similarity=0.137 Sum_probs=48.6
Q ss_pred EeecChHHHHHHHHHHH-HcCCc-eE--EEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEe
Q 006803 498 LTYGSSCVVEMILLYAH-ELGKQ-FR--VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 498 LT~g~S~tV~~vL~~A~-e~gk~-f~--ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
+++-++......+.++. +.|-+ ++ ||++-+-|.+|-..-.+.|.. +|||+|-
T Consensus 127 ~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~------------------------~Gad~Vg 182 (245)
T PRK09136 127 FTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLER------------------------DGCDLVG 182 (245)
T ss_pred CcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHH------------------------cCCCEEc
Confidence 44555565555555543 34444 32 888888898876544444432 3565554
Q ss_pred cCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 574 SNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 574 aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.-|...+.+|++.++||.+++--.
T Consensus 183 --------Ms~~pEa~~A~~~gi~~~~i~~Vt 206 (245)
T PRK09136 183 --------MTGMPEAALARELGLPYACLALVA 206 (245)
T ss_pred --------CcHHHHHHHHHHcCCCEEEEEEEe
Confidence 346789999999999999886543
No 358
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=27.71 E-value=3.6e+02 Score=28.22 Aligned_cols=97 Identities=9% Similarity=-0.015 Sum_probs=49.2
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEE-EcC-CCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEe
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVV-VVD-SRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~Vi-V~E-SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
.|..+|.++-+=..+..+..+...+++. +++ ..|...|..+..........+.+..|-.. +...+|.||.-
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~--l~~~~DvVIdf----- 75 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEA--VETDPDVLIDF----- 75 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHH--hcCCCCEEEEC-----
Confidence 4777885444433333333333556643 445 33433343332211111122333333221 23456766542
Q ss_pred cCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 574 SNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 574 aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.+.-.++.++..|-.+++|+++....
T Consensus 76 -----T~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 76 -----TTPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred -----CChHHHHHHHHHHHHCCCCEEEECCC
Confidence 35667788888888888988886654
No 359
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=27.66 E-value=2.8e+02 Score=27.54 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=43.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceeccc-chHHHHHHHHhCCCcEE
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRV-GTACVAMVAHAFRVPVL 599 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKi-GT~~lAlaAk~~~VPV~ 599 (630)
+|.|++-.=.+- ..+++.|.+.|+.+.++.+. .-+..+|.+|++--... +.....+ +.....--+...++|++
T Consensus 2 ~~~v~~~~~~~~-~~~~~~l~~~G~~~~~~~~~---~~~~~~d~iii~G~~~~--~~~~~~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 2 MIVIIDYGVGNL-RSVSKALERAGAEVVITSDP---EEILDADGIVLPGVGAF--GAAMENLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred eEEEEECCCccH-HHHHHHHHHCCCeEEEECCH---HHHccCCEEEECCCCCH--HHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 455555432222 45678888889888887542 23457888877541000 1111111 11222223445689999
Q ss_pred Eeccccccc
Q 006803 600 ICCEAYKFH 608 (630)
Q Consensus 600 V~aet~Kf~ 608 (630)
-+|--+-+-
T Consensus 76 gIC~G~q~l 84 (200)
T PRK13143 76 GICLGMQLL 84 (200)
T ss_pred EECHHHHHH
Confidence 888655443
No 360
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=27.65 E-value=3.9e+02 Score=29.04 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=20.9
Q ss_pred HHHHHHHhhccCC-CEEEeecChHHHHHHHHH
Q 006803 482 VIVRHAATKVRDG-DVLLTYGSSCVVEMILLY 512 (630)
Q Consensus 482 ~Ia~~a~~~I~dg-dvILT~g~S~tV~~vL~~ 512 (630)
.+++..++++..| ++|||||+.-.|-.++..
T Consensus 30 ~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~ 61 (310)
T TIGR00746 30 QTAPQIAKLIKRGYELVITHGNGPQVGNLLLQ 61 (310)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHhc
Confidence 3444555666544 799999999877655543
No 361
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=27.34 E-value=1.6e+02 Score=27.12 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCc-eEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcch
Q 006803 505 VVEMILLYAHELGKQ-FRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHIN 553 (630)
Q Consensus 505 tV~~vL~~A~e~gk~-f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds 553 (630)
+++.++..+.+.|.. ++|++-. ...|+..+ +.|...|+.+..|.|.
T Consensus 48 ~a~~~~~~~~~~gi~~v~v~ikG---~g~gr~~~lk~l~~~gl~I~~I~D~ 95 (110)
T PF00411_consen 48 AAEKIAKKAKELGIKTVRVKIKG---FGPGREAALKALKKSGLKIVSITDV 95 (110)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEES---SSTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEEcC---CCccHHHHHHHHHhcCCEEEEEEee
Confidence 567788888877743 4555533 55567665 8999999999999984
No 362
>PRK06460 hypothetical protein; Provisional
Probab=27.33 E-value=7.1e+02 Score=27.14 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=28.8
Q ss_pred HHHhCCCcEEEEcch---hHHHHh-ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 539 RLLAKGLSCTYTHIN---AVSYIM-HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 539 eL~~~GI~vTlI~Ds---Av~~iM-~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+...|+.+.++... .+..++ +++.+|++ ..---..|.+... -.|+-+|+.|+++|+|
T Consensus 104 ~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l-~sp~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 104 YLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFV-ENITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred HHHhhCcEEEEECCCCHHHHHHhcCCCceEEEE-ECCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 345567776666321 222222 24455555 2111223444443 2466677888887665
No 363
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=27.27 E-value=7.7e+02 Score=26.62 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=51.3
Q ss_pred EEeecChHHHHHHHHHHH--HcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc----ch------hHHHHhc---c
Q 006803 497 LLTYGSSCVVEMILLYAH--ELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH----IN------AVSYIMH---E 561 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~--e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----Ds------Av~~iM~---~ 561 (630)
|+|.|.+..+..++.... +.|. .|+ +++ |.+.+...+.+ ..|+.+..+. |. .+-..+. .
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pGd--~Vl-v~~-P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~ 171 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPDA--KVW-VSD-PTWPNHRAIFE--AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA 171 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCCC--eEE-ECC-CCcccHHHHHH--HcCCcEEEEeccccccCccCHHHHHHHHHhCCC
Confidence 789998887665553321 3342 344 443 77777655443 3666666553 11 2212221 1
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+++++=..-=-..|.++++-=--.|+-+|+.|++.++.
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 234444332223334444444456777788889887654
No 364
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=27.15 E-value=2e+02 Score=26.95 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=43.4
Q ss_pred EEEcCCCCC-----chHHHHHHHHHhCCCcE--EEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhC
Q 006803 522 VVVVDSRPK-----HEGQALLRRLLAKGLSC--TYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF 594 (630)
Q Consensus 522 ViV~ESRP~-----~eG~~La~eL~~~GI~v--TlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~ 594 (630)
+|++-+.|+ .+|.+++..+.+.|.++ ....+.+|....+.. ...+. .+-=+.+...++..|
T Consensus 4 ~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q----------~p~~~--~~n~~~~~~~L~~~~ 71 (128)
T PRK00207 4 AIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANALT----------VPASD--EFDLVRAWQQLAAEH 71 (128)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCC----------CCchh--hhhHHHHHHHHHHhc
Confidence 456667787 46777888888888662 222334444443321 11222 111235566788889
Q ss_pred CCcEEEeccccc
Q 006803 595 RVPVLICCEAYK 606 (630)
Q Consensus 595 ~VPV~V~aet~K 606 (630)
+||+|||....+
T Consensus 72 ~v~l~vC~~~a~ 83 (128)
T PRK00207 72 GVALNVCVAAAL 83 (128)
T ss_pred CCEEEEeHHHHH
Confidence 999999977653
No 365
>PRK12342 hypothetical protein; Provisional
Probab=27.08 E-value=3.3e+02 Score=28.74 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=56.0
Q ss_pred EEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchH---HHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEccee
Q 006803 496 VLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEG---QALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 496 vILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG---~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 571 (630)
++||+|..+.-.. ++++|...|-.--|.|.+ + .+.| ...++-|.. ++-. + ..|+||.|-.+
T Consensus 55 tvls~Gp~~a~~~~l~r~alamGaD~avli~d-~-~~~g~D~~ata~~La~-----------~i~~-~-~~DLVl~G~~s 119 (254)
T PRK12342 55 AALTVGGSLLQNSKVRKDVLSRGPHSLYLVQD-A-QLEHALPLDTAKALAA-----------AIEK-I-GFDLLLFGEGS 119 (254)
T ss_pred EEEEeCCChHhHHHHHHHHHHcCCCEEEEEec-C-ccCCCCHHHHHHHHHH-----------HHHH-h-CCCEEEEcCCc
Confidence 5799998775554 668788888765455543 3 2222 222333332 1111 1 37999999877
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEEEeccccccc
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFH 608 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~ 608 (630)
+-.+.+. .=+++|...++|++-.+...++.
T Consensus 120 ~D~~tgq-------vg~~lA~~Lg~P~vt~v~~~~~~ 149 (254)
T PRK12342 120 GDLYAQQ-------VGLLLGELLQLPVINAVSKIQRQ 149 (254)
T ss_pred ccCCCCC-------HHHHHHHHhCCCcEeeEEEEEEe
Confidence 7655432 23588999999998776665553
No 366
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=27.02 E-value=8e+02 Score=27.22 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=46.4
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HH-HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LL-RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
+.|+|-+-+..+..++....+.| -+|++ ..|.+.+.. +. ..+...|+.+..+.. ..+-..+. +..+|++-
T Consensus 77 ~~v~~~sG~~Ai~~~l~all~pG--D~Vvv--~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~ 152 (405)
T PRK08776 77 GGVITATGMGAINLVLNALLQPG--DTLVV--PHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIE 152 (405)
T ss_pred ceEEEcCHHHHHHHHHHHHhCCC--CEEEE--ccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 34555544444433343333333 34554 346665532 33 334566888777742 22333332 33334332
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.---..|.+.. -..|+-+|+.|+++++|
T Consensus 153 -~P~NPtG~v~d---l~~I~~la~~~gi~vIv 180 (405)
T PRK08776 153 -TPSNPLLRITD---LRFVIEAAHKVGALTVV 180 (405)
T ss_pred -CCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 22122333321 23466678888887776
No 367
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.01 E-value=4.3e+02 Score=29.81 Aligned_cols=90 Identities=17% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
++..|+.+|..++-..+.+.+++.|. .|++.|..+.. ....|.+.||.+..-.+.. . .+...|.||+..- |
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~----~~~~l~~~gi~~~~~~~~~-~-~~~~~d~vV~Spg-i 84 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC--DVVVADDNETA----RHKLIEVTGVADISTAEAS-D-QLDSFSLVVTSPG-W 84 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC--EEEEECCChHH----HHHHHHhcCcEEEeCCCch-h-HhcCCCEEEeCCC-C
Confidence 35678898888877777777777775 78888865431 2333556688775432221 2 2356788876531 1
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
-. +...-..|+..+||++=
T Consensus 85 ~~---------~~p~~~~a~~~gi~v~~ 103 (473)
T PRK00141 85 RP---------DSPLLVDAQSQGLEVIG 103 (473)
T ss_pred CC---------CCHHHHHHHHCCCceee
Confidence 11 23455566777777764
No 368
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=26.96 E-value=6.2e+02 Score=27.97 Aligned_cols=34 Identities=26% Similarity=0.171 Sum_probs=23.8
Q ss_pred hHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 554 AVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 554 Av~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.+..+|..+|+||. +.||.+ +=+-.+++|.+++=
T Consensus 289 ~~~~~l~~ADlvI~-------------rSGt~T--~E~a~lg~P~Ilip 322 (396)
T TIGR03492 289 AFAEILHWADLGIA-------------MAGTAT--EQAVGLGKPVIQLP 322 (396)
T ss_pred hHHHHHHhCCEEEE-------------CcCHHH--HHHHHhCCCEEEEe
Confidence 35677888887743 367755 44667899999874
No 369
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.85 E-value=2.3e+02 Score=25.57 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=36.6
Q ss_pred hccCCCEEEeecChH---HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh
Q 006803 490 KVRDGDVLLTYGSSC---VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA 554 (630)
Q Consensus 490 ~I~dgdvILT~g~S~---tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA 554 (630)
.+..+|+++.+++|+ -+...++.|+++|. +|+++-+. + .|+..-.+.|+.+..+++..
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~--~iI~IT~~----~-~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGA--KIVAITSG----G-KLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--EEEEEeCC----c-hHHHHHHHcCCcEEECCCCC
Confidence 566789999998877 45667777777664 33332221 1 25554445688888877643
No 370
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=26.81 E-value=2e+02 Score=28.22 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCC-ceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 535 ALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNG-TTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 535 ~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG-~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
.+++.|.+.|++++++.+.. -+.+.|.||++--.....- ......|....-.-+...++|++-+|--+-
T Consensus 13 ~~~~~l~~~g~~v~v~~~~~---~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q 82 (198)
T cd01748 13 SVANALERLGAEVIITSDPE---EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQ 82 (198)
T ss_pred HHHHHHHHCCCeEEEEcChH---HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH
Confidence 45688889999998887532 2457888877431110000 001123444444444456999997775443
No 371
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=26.80 E-value=2.1e+02 Score=31.67 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=70.7
Q ss_pred CCEEEee--cChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH----HHHHHHh-C-CCcEEEEcchh--HHHHhcccc
Q 006803 494 GDVLLTY--GSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA----LLRRLLA-K-GLSCTYTHINA--VSYIMHEVT 563 (630)
Q Consensus 494 gdvILT~--g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~----La~eL~~-~-GI~vTlI~DsA--v~~iM~~Vd 563 (630)
+--|.-+ -+..++..+|+.|-+.+..+-+-+.++.=.+-|.. ++..+.+ . .|||.+-+|.+ .-.++.-++
T Consensus 17 ~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~ 96 (347)
T PRK09196 17 GYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQ 96 (347)
T ss_pred CceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH
Confidence 3344443 35668888998887766654444444332333333 3455554 3 49999999976 344444344
Q ss_pred EEEEcceeEecCCcee-----------cccchHHHHHHHHhCCCcEE
Q 006803 564 RVFLGASSVLSNGTTY-----------SRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~-----------NKiGT~~lAlaAk~~~VPV~ 599 (630)
.|-.+|+-||+-. |--=|..+.-.||.+||.|=
T Consensus 97 ---~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 97 ---LGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred ---cCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5999999999998 88999999999999999775
No 372
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=26.64 E-value=1.1e+03 Score=27.80 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhccC--CCEEEeecChH----HHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHHHHHHhCCCcEE
Q 006803 476 IILADKVIVRHAATKVRD--GDVLLTYGSSC----VVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALLRRLLAKGLSCT 548 (630)
Q Consensus 476 i~~A~~~Ia~~a~~~I~d--gdvILT~g~S~----tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La~eL~~~GI~vT 548 (630)
++.|...+++...+.+.. +..||.+|-.+ --+-+-++++..|....||+.. +....-. .+...|...|+++.
T Consensus 115 ME~AG~avA~~I~~~~~~~~~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~-~~~~~~~~~~~~~~~~~gi~~~ 193 (544)
T PLN02918 115 MELAGLSVAASIAEVYKPGEYSRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPK-RTAKPLYTGLVTQLESLSVPFV 193 (544)
T ss_pred HHHHHHHHHHHHHHhcccccCCEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcC-CCCcHHHHHHHHHHHHcCCCee
Confidence 345556666655555543 36788887444 3333344555678888887743 3222212 24467788898764
Q ss_pred EEcchhHHHHhccccEEEEcceeEecCC
Q 006803 549 YTHINAVSYIMHEVTRVFLGASSVLSNG 576 (630)
Q Consensus 549 lI~DsAv~~iM~~Vd~VivGAdaI~aNG 576 (630)
.+.+-. ..+....|.|| |+|+--|
T Consensus 194 ~~~~~~-~~l~~~~DlIV---DALFGtG 217 (544)
T PLN02918 194 SVEDLP-ADLSKDFDIIV---DAMFGFS 217 (544)
T ss_pred eccccc-hhhccCCCEEE---EeccccC
Confidence 332201 11224467664 6677666
No 373
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=26.59 E-value=3.9e+02 Score=28.92 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHhCCCcEEEEcc--------hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhC----CCcEEEeccc
Q 006803 537 LRRLLAKGLSCTYTHI--------NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF----RVPVLICCEA 604 (630)
Q Consensus 537 a~eL~~~GI~vTlI~D--------sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~----~VPV~V~aet 604 (630)
+..|.+.||++++|.. ..+-..+++.+.|| ++.++.+..-.|.....+++.+. ..|+.-++-.
T Consensus 220 a~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv-----~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~ 294 (327)
T PRK09212 220 AELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLV-----VVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGK 294 (327)
T ss_pred HHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEE-----EEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCC
Confidence 3556666777766642 23555666777775 66777777778888888888773 4577666554
Q ss_pred ccc
Q 006803 605 YKF 607 (630)
Q Consensus 605 ~Kf 607 (630)
..|
T Consensus 295 ~~~ 297 (327)
T PRK09212 295 DVP 297 (327)
T ss_pred Ccc
Confidence 444
No 374
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=26.40 E-value=5.7e+02 Score=26.38 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=47.8
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHH-HHHhCCCcEEEEcc-------hhHHHHhc----
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLR-RLLAKGLSCTYTHI-------NAVSYIMH---- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~-eL~~~GI~vTlI~D-------sAv~~iM~---- 560 (630)
..+.|+|.+-+.....+|.... +..-.|++.+. .+....... ...-.|+++..+.. ..+...+.
T Consensus 47 ~~~~~~~~~gt~a~~~~~~~l~--~~gd~v~~~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~ 122 (338)
T cd06502 47 KEAALFVPSGTAANQLALAAHT--QPGGSVICHET--AHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDD 122 (338)
T ss_pred CCeEEEecCchHHHHHHHHHhc--CCCCeEEEecC--cceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhccCC
Confidence 4567777766655444444333 33345666543 222111110 11116777766642 23333333
Q ss_pred ----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 ----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+..+|++- . ....|+++..---..++-+|+.|++.++|
T Consensus 123 ~~~~~~~~v~l~-~-p~n~g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 123 IHFPPPSLVSLE-N-TTEGGTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred CcCCcceEEEEE-e-ecCCccccCHHHHHHHHHHHHHcCCeEee
Confidence 22233322 1 22234444333334466678888988876
No 375
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=26.39 E-value=1.2e+02 Score=33.37 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=25.0
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCC
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRP 529 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP 529 (630)
.||..|.+.....++..|.+.| ++|+++++.+
T Consensus 4 ~ililg~g~~~~~~~~~a~~lG--~~~v~~~~~~ 35 (450)
T PRK06111 4 KVLIANRGEIAVRIIRTCQKLG--IRTVAIYSEA 35 (450)
T ss_pred eEEEECCcHHHHHHHHHHHHcC--CeEEEEechh
Confidence 6899999999999999998877 4555555443
No 376
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=26.35 E-value=4.7e+02 Score=27.05 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=64.0
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCC---------CCCc-----hH----HHHHHHHHhCC--
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDS---------RPKH-----EG----QALLRRLLAKG-- 544 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES---------RP~~-----eG----~~La~eL~~~G-- 544 (630)
+.+.+.|. +..||..|..++--.++......|.. +++++|- |-.+ -| ..|+++|.+.+
T Consensus 3 ~e~~~~L~-~~~VlVvG~GGvGs~va~~Lar~GVg-~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 3 EEGLEKLR-NAHVAVVGLGGVGSWAAEALARSGVG-KLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred HHHHHHHh-CCCEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 34455554 46789999988766666666666754 3333331 1111 12 23346666654
Q ss_pred CcEEEEc-----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 545 LSCTYTH-----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 545 I~vTlI~-----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
+.++.+. ++....+..+.|.||...|.+- . ...+.-.|+.++|||+.+...-
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~------~---k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIR------A---KVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHH------H---HHHHHHHHHHhCCCEEEEeCCc
Confidence 4444443 3444444446898887776643 2 2456677899999999875544
No 377
>PRK06207 aspartate aminotransferase; Provisional
Probab=26.31 E-value=7.8e+02 Score=26.86 Aligned_cols=93 Identities=13% Similarity=0.202 Sum_probs=50.3
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-------------hhHHHHhc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-------------NAVSYIMH 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------------sAv~~iM~ 560 (630)
.++++|.|.+..+..++....+.| -+|+|. .|.+.+.. ..+...|..+..+.. ..+-..+.
T Consensus 103 ~~I~it~Ga~~al~~~~~~l~~~G--d~Vlv~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~ 176 (405)
T PRK06207 103 DELIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK 176 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh
Confidence 578899888887766665544434 345543 36666543 333445655544421 12222222
Q ss_pred -cccEEEEcceeEecCCceecccchHH-------HHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTAC-------VAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~-------lAlaAk~~~VPV~V 600 (630)
++.+|++- |= -|.+|+.. |+-+|+.|++.+++
T Consensus 177 ~~~k~v~l~------~P--~NPTG~~~s~e~l~~l~~~a~~~~~~iI~ 216 (405)
T PRK06207 177 AGVRVFLFS------NP--NNPAGVVYSAEEIAQIAALARRYGATVIV 216 (405)
T ss_pred hcCeEEEEC------CC--CCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34444332 21 27777654 66678888987664
No 378
>PRK05595 replicative DNA helicase; Provisional
Probab=26.26 E-value=4e+02 Score=29.88 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=27.9
Q ss_pred cccEEEEcc-eeEecCCceecc---cc--hHHHHHHHHhCCCcEEEeccccc
Q 006803 561 EVTRVFLGA-SSVLSNGTTYSR---VG--TACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 561 ~Vd~VivGA-daI~aNG~V~NK---iG--T~~lAlaAk~~~VPV~V~aet~K 606 (630)
.+++|||== .-|-..+..-|+ +| +-.+-.+|++++|||+++|..-+
T Consensus 311 ~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR 362 (444)
T PRK05595 311 GIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQLSR 362 (444)
T ss_pred CCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCc
Confidence 477777622 223222222222 22 34477789999999999997754
No 379
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=26.15 E-value=4.9e+02 Score=29.98 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=47.5
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH-------------HHH---HHHHHhCCCcEEEEc---
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG-------------QAL---LRRLLAKGLSCTYTH--- 551 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-------------~~L---a~eL~~~GI~vTlI~--- 551 (630)
+..|+.|+.+|-...=+.....+.+.|. +|+|+|..+..-| ..+ ...+.+.|+.+.+-+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH--AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 4678999999987765556666666664 6888997665433 111 234567888765532
Q ss_pred -chhHHHHhccccEEEEcc
Q 006803 552 -INAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 552 -DsAv~~iM~~Vd~VivGA 569 (630)
|-....+....|.||++.
T Consensus 212 ~~~~~~~~~~~~D~Vi~At 230 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAI 230 (564)
T ss_pred CcCCHHHHHhhCCEEEEee
Confidence 212333344678888744
No 380
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=26.14 E-value=5e+02 Score=29.71 Aligned_cols=109 Identities=13% Similarity=0.157 Sum_probs=68.0
Q ss_pred hhcc--CCCEEEeecChHHHHHHHHHHHH-c--CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc---
Q 006803 489 TKVR--DGDVLLTYGSSCVVEMILLYAHE-L--GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH--- 560 (630)
Q Consensus 489 ~~I~--dgdvILT~g~S~tV~~vL~~A~e-~--gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--- 560 (630)
++|. +.|+|+|=+-+....-+|+.-.. . +.+-+|+.+.+.=...+. -.+.|.+.|+.+||++-.--+++.-
T Consensus 96 klInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~-s~~~l~~~g~~Vt~lpv~~~~~~d~~~~ 174 (428)
T KOG1549|consen 96 KLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLD-SCRALQEEGLEVTYLPVEDSGLVDISKL 174 (428)
T ss_pred HHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhH-HHHHHHhcCeEEEEeccCccccccHHHH
Confidence 3553 34688888777766666665332 1 233367777665443322 2377999999999998662222211
Q ss_pred ----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 ----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+-+-.+++.|.|..-=++++.+ --|..+|++.+|.|+|
T Consensus 175 ~~~i~~~T~lv~I~~Vnn~~gv~~Pv--~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 175 REAIRSKTRLVSIMHVNNEIGVLQPV--KEIVKICREEGVQVHV 216 (428)
T ss_pred HHhcCCCceEEEEEecccCccccccH--HHHHHHhCcCCcEEEe
Confidence 3466777777777665555554 3477899999996665
No 381
>PRK09082 methionine aminotransferase; Validated
Probab=26.12 E-value=7e+02 Score=26.84 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=49.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHHhc-cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYIMH-EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~Vd~ 564 (630)
.+++|-|.+..+..++......| -+|++. .|.+-+...+.+ ..|+.+..+... .+-..+. ++..
T Consensus 93 ~i~~t~G~~~al~~~~~~~~~~g--d~Vli~--~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 166 (386)
T PRK09082 93 EITVTAGATEALFAAILALVRPG--DEVIVF--DPSYDSYAPAIE--LAGGRAVRVALQPPDFRVDWQRFAAAISPRTRL 166 (386)
T ss_pred cEEEeCCHHHHHHHHHHHHcCCC--CEEEEe--CCCchhhHHHHH--HcCCEEEEEecCcccccCCHHHHHHhcCccceE
Confidence 57777777776665555443333 345544 466655443333 357766555432 1222222 3444
Q ss_pred EEEcceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
|++ + ..-|..|+ ..++-+|++|++.+++
T Consensus 167 v~l-------~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 167 IIL-------N-TPHNPSGTVWSAADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred EEE-------e-CCCCCCCcCCCHHHHHHHHHHHHHCCEEEEE
Confidence 433 2 23466664 4567788899976664
No 382
>PRK07777 aminotransferase; Validated
Probab=26.08 E-value=5.6e+02 Score=27.48 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=48.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-----------hhHHHHhc-cc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-----------NAVSYIMH-EV 562 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~-~V 562 (630)
.+|+|.|.+..+..++......| -+|++. .|.+.+...+ +...|..+..+.. ..+-..+. ++
T Consensus 87 ~i~~t~G~~~al~~~~~~~~~~g--d~vli~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGLVEPG--DEVLLI--EPYYDSYAAV--IAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRT 160 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhhHHH--HHHCCCEEEEeecCCccCCCcCCHHHHHHhcCccc
Confidence 58899988887766665433333 355553 3666665433 3344655544421 11222222 33
Q ss_pred cEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
..|++ + ..-|..|+. .|+-+|+.|++.+++
T Consensus 161 ~~v~l-------~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 197 (387)
T PRK07777 161 RALIV-------N-SPHNPTGTVLTAAELAAIAELAVEHDLLVIT 197 (387)
T ss_pred EEEEE-------c-CCCCCCCccCCHHHHHHHHHHHHhcCcEEEE
Confidence 33332 2 234566653 466678889987665
No 383
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=26.07 E-value=2.3e+02 Score=29.51 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH----Hhc
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY----IMH 560 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~----iM~ 560 (630)
+.++++|.+-..|..+|...... + +..+...|...|+++.++.|..... .+.
T Consensus 131 ~~~~~~i~~A~~I~i~G~G~S~~--~----------------------A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~ 186 (292)
T PRK11337 131 HRAARFFYQARQRDLYGAGGSAA--I----------------------ARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQ 186 (292)
T ss_pred HHHHHHHHcCCeEEEEEecHHHH--H----------------------HHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCC
Confidence 45666777667777776544311 0 1224455667788888777754332 344
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.=|.||+- .-.|..- -+..++-.||.+|+++++++...
T Consensus 187 ~~Dl~I~i----S~sG~t~---~~~~~~~~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 187 EGDVVLVV----SHSGRTS---DVIEAVELAKKNGAKIICITNSY 224 (292)
T ss_pred CCCEEEEE----eCCCCCH---HHHHHHHHHHHCCCeEEEEeCCC
Confidence 56776652 2233332 26678889999999999997654
No 384
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=26.07 E-value=2.3e+02 Score=29.39 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhCCCcEEEEcch-hHHHHh--ccccEEEEcce
Q 006803 532 EGQALLRRLLAKGLSCTYTHIN-AVSYIM--HEVTRVFLGAS 570 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~Ds-Av~~iM--~~Vd~VivGAd 570 (630)
.|..+...|.+.|+.+.+|..+ -....+ .++|.||...+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~ 65 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALH 65 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecC
Confidence 4677778888888888888433 222222 25788887654
No 385
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=26.05 E-value=9.1e+02 Score=26.56 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=53.4
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHH-HhCCCcEEEEcch-------hHHHHhc-cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRL-LAKGLSCTYTHIN-------AVSYIMH-EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL-~~~GI~vTlI~Ds-------Av~~iM~-~Vd~ 564 (630)
.+++|.|.+..+..++.. ....+.-+|++.+ |.+....-+ ..+ ...|+.+.++.-. .+-..+. ++..
T Consensus 131 ~v~~~~g~t~~~~~~~~a-~~~~~g~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~ 207 (447)
T PRK00451 131 NASMYDGATALAEAALMA-VRITKRKKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAA 207 (447)
T ss_pred eEEecCcHHHHHHHHHHH-HHhcCCCEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEE
Confidence 466777766655555543 3212334677754 344333333 222 3468888888532 1222232 4444
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
|++.. . ...|.+ .. --.|+-+|+++++.|+|.
T Consensus 208 v~l~~-p-n~tG~v-~~--l~~I~~~a~~~~~~~iv~ 239 (447)
T PRK00451 208 VVVQY-P-NFFGVI-ED--LEEIAEIAHAGGALFIVG 239 (447)
T ss_pred EEEEC-C-CCCCee-CC--HHHHHHHHHHCCCEEEEE
Confidence 54443 2 334433 33 345788999999999883
No 386
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.95 E-value=1.9e+02 Score=30.93 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=41.4
Q ss_pred CEEEeecChHHHHHHHHHHHHcCC-ceEEEEcC-CCCCchHHHHHHHHHhCCCcEEEEc---------chhHHHHhc--c
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGK-QFRVVVVD-SRPKHEGQALLRRLLAKGLSCTYTH---------INAVSYIMH--E 561 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk-~f~ViV~E-SRP~~eG~~La~eL~~~GI~vTlI~---------DsAv~~iM~--~ 561 (630)
-.||..|+.+....+| .+.+.|. ..+|.++= .+|...+. ..+.|||+.++. +..+...|+ +
T Consensus 92 i~vl~Sg~g~nl~al~-~~~~~~~~~~~i~~visn~~~~~~l-----A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~ 165 (286)
T PRK13011 92 VLIMVSKFDHCLNDLL-YRWRIGELPMDIVGVVSNHPDLEPL-----AAWHGIPFHHFPITPDTKPQQEAQVLDVVEESG 165 (286)
T ss_pred EEEEEcCCcccHHHHH-HHHHcCCCCcEEEEEEECCccHHHH-----HHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhC
Confidence 3566677655555544 4555564 46655443 37754332 566799999873 122233344 5
Q ss_pred ccEEEE-cceeEe
Q 006803 562 VTRVFL-GASSVL 573 (630)
Q Consensus 562 Vd~Viv-GAdaI~ 573 (630)
+|++++ |-.+|+
T Consensus 166 ~Dlivlagy~~il 178 (286)
T PRK13011 166 AELVVLARYMQVL 178 (286)
T ss_pred cCEEEEeChhhhC
Confidence 898877 444554
No 387
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=25.93 E-value=5e+02 Score=28.11 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=29.9
Q ss_pred eecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE
Q 006803 499 TYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 499 T~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 550 (630)
+|+++..+...|+..++.+....|++ ....-.+.+..|.+.|+++..+
T Consensus 115 ~~G~~~~~~~~i~~ik~~~p~v~Vi~----G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 115 AHGHSVYVIEMIKFIKKKYPNVDVIA----GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CCCCcHHHHHHHHHHHHHCCCceEEE----CCCCCHHHHHHHHhcCCCEEEE
Confidence 56777777777877776554455555 1112334567778888876655
No 388
>PRK13937 phosphoheptose isomerase; Provisional
Probab=25.87 E-value=6.4e+02 Score=24.77 Aligned_cols=36 Identities=8% Similarity=-0.055 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 533 GQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 533 G~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
=...++.+.+.|+++..||.+.-+.+.+.+|.+|.-
T Consensus 122 ~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~ 157 (188)
T PRK13937 122 VLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV 157 (188)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 344567888889999999988877777778887753
No 389
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=25.86 E-value=3.3e+02 Score=30.16 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=66.5
Q ss_pred HHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCC---------CCCc-----hHH----HHHHHHHhC
Q 006803 482 VIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDS---------RPKH-----EGQ----ALLRRLLAK 543 (630)
Q Consensus 482 ~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES---------RP~~-----eG~----~La~eL~~~ 543 (630)
.++..+..++. +..||..|..++=-.++......|-. ++.++|. |-.+ -|+ .+.+.|.+.
T Consensus 31 ~~g~~~q~~L~-~~~VlviG~GGlGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~ 108 (392)
T PRK07878 31 DVGVDGQKRLK-NARVLVIGAGGLGSPTLLYLAAAGVG-TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI 108 (392)
T ss_pred hcCHHHHHHHh-cCCEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh
Confidence 35556666665 46789999998777777776667765 3444431 2111 121 123556654
Q ss_pred C--CcEEEEc----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 544 G--LSCTYTH----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 544 G--I~vTlI~----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
. +.++.+. ...+..++..+|.||.+.|.+. --+.+.-+|..++|||+.+
T Consensus 109 np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~---------~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 109 NPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFA---------TRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred CCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 4 5554443 2234456788999988776542 3456778899999997654
No 390
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=25.80 E-value=1.6e+02 Score=30.82 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhCCCcEEEEcchh-HHHH---hccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 532 EGQALLRRLLAKGLSCTYTHINA-VSYI---MHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsA-v~~i---M~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|+.+++.|.+.|+.+.+|.... .... +.+.|.||.-+|..+. .-|. +.-++..+|+|++-
T Consensus 20 s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~g------e~~~--~~~~le~~gip~~G 84 (299)
T PRK14571 20 SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFG------EDGT--LQAILDFLGIRYTG 84 (299)
T ss_pred HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCC------CccH--HHHHHHHcCCCccC
Confidence 46666677777777776664321 1111 2357888887765431 1122 34455556677653
No 391
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=25.69 E-value=1.9e+02 Score=30.58 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=52.0
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh---HHHHhc--cccEEEE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA---VSYIMH--EVTRVFL 567 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---v~~iM~--~Vd~Viv 567 (630)
...+|+|.|.+..+..++. +...| .|++. .|.+.+...+ +...|+.+..+.... .-..+. ++.+|++
T Consensus 57 ~~~I~it~Gs~~~l~~~~~-~~~~~---~vv~~--~P~y~~y~~~--~~~~G~~v~~vp~~~~~~~~~~l~~~~~k~v~l 128 (332)
T PRK06425 57 KIKVLIGPGLTHFIYRLLS-YINVG---NIIIV--EPNFNEYKGY--AFTHGIRISALPFNLINNNPEILNNYNFDLIFI 128 (332)
T ss_pred cceEEECCCHHHHHHHHHH-HhCCC---cEEEe--CCChHHHHHH--HHHcCCeEEEEeCCcccCcHHHHhhcCCCEEEE
Confidence 3447777777776665554 43322 46666 4887765544 334588777765321 011222 3444443
Q ss_pred cceeEecCCceecccch-------HHHHHHHHhCCCcEEE
Q 006803 568 GASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~V 600 (630)
+ .--|++|+ ..++-.|++|++.+++
T Consensus 129 -------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 160 (332)
T PRK06425 129 -------V-SPDNPLGNLISRDSLLTISEICRKKGALLFI 160 (332)
T ss_pred -------e-CCCCCcCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 3 34567776 4566678888986664
No 392
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=25.67 E-value=6.8e+02 Score=27.32 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=48.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-H-HHHhCCCcEEEEcc-hhHHHHhc-cccEEEEcce
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-R-RLLAKGLSCTYTHI-NAVSYIMH-EVTRVFLGAS 570 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~-eL~~~GI~vTlI~D-sAv~~iM~-~Vd~VivGAd 570 (630)
.+|+|-+....+..+| .+.+.|. +|++. ++.+.|.... . .+...|+.+++..| ..+...+. +..+|++..
T Consensus 71 ~~v~~~sG~aAi~~~l-~~l~~GD--~VI~~--~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~TklV~les- 144 (364)
T PRK07269 71 YALATSSGMSAIVLAF-SVFPVGS--KVVAV--RDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIET- 144 (364)
T ss_pred eEEEeCCHHHHHHHHH-HHhCCCC--EEEEe--cCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHhcCcCceEEEEEC-
Confidence 3455544444444444 4444443 56665 4555444332 2 23334677777665 23333443 444443321
Q ss_pred eEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 571 aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
-.-..|.+. ---.++-+|+.++++|+|
T Consensus 145 P~NPtg~~~---di~~I~~la~~~gi~vvv 171 (364)
T PRK07269 145 PTNPLMVEF---DIEKVAKLAHAKGAKVIV 171 (364)
T ss_pred CCCCCCeee---CHHHHHHHHHHcCCEEEE
Confidence 111123222 334567778999999887
No 393
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.65 E-value=2.5e+02 Score=28.72 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=51.8
Q ss_pred EcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHH---hccccEEEEcceeEecC-----------CceecccchHH
Q 006803 524 VVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYI---MHEVTRVFLGASSVLSN-----------GTTYSRVGTAC 586 (630)
Q Consensus 524 V~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~i---M~~Vd~VivGAdaI~aN-----------G~V~NKiGT~~ 586 (630)
|+-..+..+...+++.|.+.||++.=|+. .+.-.+ -.+.+-++|||-.|+.- ..++++.-.-.
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~ 88 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQE 88 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHH
Confidence 44455566777888899999987655543 333322 22456789999887632 24566777777
Q ss_pred HHHHHHhCCCcEEE
Q 006803 587 VAMVAHAFRVPVLI 600 (630)
Q Consensus 587 lAlaAk~~~VPV~V 600 (630)
+.-.|++++||++-
T Consensus 89 vi~~a~~~~i~~iP 102 (201)
T PRK06015 89 LLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHcCCCEeC
Confidence 88888888888884
No 394
>PRK05865 hypothetical protein; Provisional
Probab=25.62 E-value=1.5e+02 Score=36.66 Aligned_cols=98 Identities=16% Similarity=0.051 Sum_probs=56.3
Q ss_pred EEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE--cc-hhHHHHhccccEEEEccee
Q 006803 496 VLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT--HI-NAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 496 vILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~Vd~VivGAda 571 (630)
.||..|-++.+=. ++..+.++| .+|+++..++.. .+ ..++.+... .| ..+..++..+|.||.-|-
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G--~~Vv~l~R~~~~-------~~-~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa- 70 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG--HEVVGIARHRPD-------SW-PSSADFIAADIRDATAVESAMTGADVVAHCAW- 70 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc--CEEEEEECCchh-------hc-ccCceEEEeeCCCHHHHHHHHhCCCEEEECCC-
Confidence 5788888776643 444444555 466666543210 01 123322111 12 355666778888887663
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
...+..-+|-.||..+.-+|+.+++.-+|...+
T Consensus 71 ~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS 103 (854)
T PRK05865 71 VRGRNDHINIDGTANVLKAMAETGTGRIVFTSS 103 (854)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 222233467889999998999998865555444
No 395
>PRK11071 esterase YqiA; Provisional
Probab=25.55 E-value=4.9e+02 Score=25.43 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=22.3
Q ss_pred EEEeecChHHHHH----HHHHH-HHcCCceEEEEcCCCCC
Q 006803 496 VLLTYGSSCVVEM----ILLYA-HELGKQFRVVVVDSRPK 530 (630)
Q Consensus 496 vILT~g~S~tV~~----vL~~A-~e~gk~f~ViV~ESRP~ 530 (630)
+|+.||+.+.... .+... .+.+..++|++.|-+..
T Consensus 4 illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~ 43 (190)
T PRK11071 4 LLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY 43 (190)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC
Confidence 6889997653321 23232 24466899999998754
No 396
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=25.50 E-value=3e+02 Score=29.45 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=12.0
Q ss_pred HHHHHHHHhCCCcEEE
Q 006803 585 ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 585 ~~lAlaAk~~~VPV~V 600 (630)
-.|+-+|++|++.+++
T Consensus 190 ~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 190 DEICDLADKYDALVMV 205 (393)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3577788899987665
No 397
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.45 E-value=1.2e+02 Score=30.04 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecC-CceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 534 QALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSN-GTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 534 ~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aN-G~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
..+++.|...|++++++.+.. -+.++|.+|++--.-... -......|-...-.-+...++||+-+|--+-
T Consensus 13 ~~~~~~l~~~g~~v~~~~~~~---~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Q 83 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSDPE---EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQ 83 (199)
T ss_pred HHHHHHHHHCCCcEEEEcChH---HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHH
Confidence 446688889999999885522 245788887743100000 0001223433333333467999997775543
No 398
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=25.32 E-value=7.1e+02 Score=27.07 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=12.1
Q ss_pred HHHHHHHHhCCCcEEE
Q 006803 585 ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 585 ~~lAlaAk~~~VPV~V 600 (630)
-.|+-+|+.||++|+|
T Consensus 191 ~~i~~~~~~~g~~~~v 206 (406)
T TIGR01814 191 AAITRAAHAKGALVGF 206 (406)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3477788888888776
No 399
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=25.28 E-value=8.5e+02 Score=25.98 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=50.7
Q ss_pred CCCEEEeecChHHHHHHHHHHHH----cCCceEEEEcCC-CCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHh
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHE----LGKQFRVVVVDS-RPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIM 559 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e----~gk~f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM 559 (630)
..++++|.|.+..+..++..+.. ....-+|++.+. .|-+... ...+...|+.+.+|... .+...+
T Consensus 60 ~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~--~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i 137 (382)
T TIGR03403 60 LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRAT--CAFLESLGVEVTYLPINEQGTITAEQVREAI 137 (382)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHH--HHHHHHCCCEEEEEecCCCCCCCHHHHHHhc
Confidence 34677777666555544543321 122235666653 3433322 23456689988887521 222222
Q ss_pred c-cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 560 H-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 560 ~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
. +..+|++ ...=...|.+.. + ..|+-+|+.+|++++|
T Consensus 138 ~~~t~lv~~-~~~~n~tG~~~~-~--~~I~~la~~~g~~~iv 175 (382)
T TIGR03403 138 TEKTALVSV-MWANNETGMIFP-I--KEIGEICKERGVLFHT 175 (382)
T ss_pred ccCCeEEEE-EcccCCCccccC-H--HHHHHHHHHcCCEEEE
Confidence 2 2333333 221122333332 2 3577778889988776
No 400
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=25.26 E-value=3.6e+02 Score=26.76 Aligned_cols=108 Identities=17% Similarity=0.079 Sum_probs=58.2
Q ss_pred CCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc------
Q 006803 493 DGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------ 560 (630)
Q Consensus 493 dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 560 (630)
.|.+||..|-++-+ ..+.+.+.++| .+|+++..++ .+...+...+...|..+.++ +| ..+..++.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~-~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDP-AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCH-HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 35677777766644 45555555555 5777775443 33445556676667655544 33 33333443
Q ss_pred -cccEEEEcceeEecCCce-------------ecccchHHHHHHHHhC----CCcEEEeccc
Q 006803 561 -EVTRVFLGASSVLSNGTT-------------YSRVGTACVAMVAHAF----RVPVLICCEA 604 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V-------------~NKiGT~~lAlaAk~~----~VPV~V~aet 604 (630)
.+|.||..|-.. ..+.+ +|-.|++.+.-++..+ +...+|...+
T Consensus 86 ~~~d~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss 146 (255)
T PRK07523 86 GPIDILVNNAGMQ-FRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS 146 (255)
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 367776655221 11111 5567777777666543 4455555433
No 401
>PRK06290 aspartate aminotransferase; Provisional
Probab=25.24 E-value=5.4e+02 Score=28.35 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=49.5
Q ss_pred ccCC-CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-------hHHHH---h
Q 006803 491 VRDG-DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-------AVSYI---M 559 (630)
Q Consensus 491 I~dg-dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~i---M 559 (630)
+... ++|+|.|....+..++......|. .|+|.+ |.+.+.... +...|+.+..+... .+-.+ +
T Consensus 103 ~~~~~~I~it~Gs~~al~~~~~~~~~~gd--~Vlv~~--P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~ 176 (410)
T PRK06290 103 IDPVTEVIHSIGSKPALAMLPSCFINPGD--VTLMTV--PGYPVTGTH--TKYYGGEVYNLPLLEENNFLPDLDSIPKDI 176 (410)
T ss_pred CCCcceEEEccCHHHHHHHHHHHhCCCCC--EEEEeC--CCCccHHHH--HHHcCCEEEEEecCCCcCCcCCHHHHHHhh
Confidence 4444 688888877766555544333332 444443 666665443 23367766555421 11111 1
Q ss_pred c-cccEEEEcceeEecCCceecccch-------HHHHHHHHhCCCcEE
Q 006803 560 H-EVTRVFLGASSVLSNGTTYSRVGT-------ACVAMVAHAFRVPVL 599 (630)
Q Consensus 560 ~-~Vd~VivGAdaI~aNG~V~NKiGT-------~~lAlaAk~~~VPV~ 599 (630)
. ++..|++ | .--|.+|+ ..|+-+|++|++-++
T Consensus 177 ~~~~k~i~l-------~-nP~NPTG~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 177 KEKAKLLYL-------N-YPNNPTGAVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred cccceEEEE-------E-CCCCCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 1 3444443 2 12366666 455667888988433
No 402
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=25.22 E-value=8.2e+02 Score=25.77 Aligned_cols=102 Identities=16% Similarity=0.059 Sum_probs=53.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEe
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
..+++|.|....+..++ .+ ..| -+|+| ++ |.+.+...+ +...|+.+..+....+...+.+.++|++--=. -
T Consensus 65 ~~I~it~Gs~~al~~~~-~~-~~g--d~v~v-~~-P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~-N 135 (330)
T PRK05664 65 PQLLPVAGSQAAIQALP-RL-RAP--GRVGV-LS-PCYAEHAHA--WRRAGHQVRELDEAEVEAALDSLDVLVVVNPN-N 135 (330)
T ss_pred CCEEECcCHHHHHHHHH-Hc-cCC--CEEEE-cC-CChHHHHHH--HHHcCCeEEEechhhHhhhhcCCCEEEEeCCc-C
Confidence 36778887776554443 22 233 34444 33 777665443 34568888888765666666655554432111 1
Q ss_pred cCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 574 SNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 574 aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
..|.+++.-=-..++-.|+.+++ ++|+=|.|
T Consensus 136 PTG~~~s~~~l~~l~~~~~~~~~-~iI~DE~y 166 (330)
T PRK05664 136 PTGRRFDPARLLAWHARLAARGG-WLVVDEAF 166 (330)
T ss_pred CCCCccCHHHHHHHHHHHHhcCC-EEEEECCc
Confidence 22333333222344555677787 34444554
No 403
>PRK07589 ornithine cyclodeaminase; Validated
Probab=25.20 E-value=5.5e+02 Score=28.27 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=60.8
Q ss_pred HHHHhhcc--CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccc
Q 006803 485 RHAATKVR--DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEV 562 (630)
Q Consensus 485 ~~a~~~I~--dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~V 562 (630)
-.+.+++. +-.+++.+|.......-++.+...-..-+|+|..-.| ..-..++.++.+.|+++....+ +-.....+
T Consensus 118 ala~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~-~~a~~~~~~~~~~~~~v~~~~~--~~~av~~A 194 (346)
T PRK07589 118 ALAAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDP-AATAKLARNLAGPGLRIVACRS--VAEAVEGA 194 (346)
T ss_pred HHHHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCH-HHHHHHHHHHHhcCCcEEEeCC--HHHHHhcC
Confidence 34455553 3467788887776655554433322333466553332 2345677888888888887543 45566788
Q ss_pred cEEEEcc---e-------eEecCCceecccchHH
Q 006803 563 TRVFLGA---S-------SVLSNGTTYSRVGTAC 586 (630)
Q Consensus 563 d~VivGA---d-------aI~aNG~V~NKiGT~~ 586 (630)
|.|+.-. + .++..|..+|-||++.
T Consensus 195 DIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 195 DIITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred CEEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 9888744 2 2456788899999765
No 404
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=25.19 E-value=7.1e+02 Score=27.22 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=29.7
Q ss_pred CCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 544 GLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 544 GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+..+..+.+.+ ..+|..+|.+|+-+ ||..+ =|-.+++|++++
T Consensus 251 ~~~v~~~~~~~-~~~l~aADl~V~~S-------------Gt~tl--Ea~a~G~P~Vv~ 292 (385)
T TIGR00215 251 DLQLHLIDGDA-RKAMFAADAALLAS-------------GTAAL--EAALIKTPMVVG 292 (385)
T ss_pred CCcEEEECchH-HHHHHhCCEEeecC-------------CHHHH--HHHHcCCCEEEE
Confidence 45666665544 45888899987755 66544 566789999998
No 405
>PRK07671 cystathionine beta-lyase; Provisional
Probab=25.17 E-value=7.9e+02 Score=26.85 Aligned_cols=71 Identities=13% Similarity=0.224 Sum_probs=39.4
Q ss_pred eEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcceeEecCCceecccch----HHHHH
Q 006803 520 FRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGT----ACVAM 589 (630)
Q Consensus 520 f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT----~~lAl 589 (630)
-+|+|.+ |.+.|. .+. ..+...|+.++++... .+...+. +..+|++- ...|..|. -.|+-
T Consensus 89 d~Viv~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le--------~P~NPtg~~~dl~~I~~ 158 (377)
T PRK07671 89 DHVILTD--DVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVE--------TPTNPLLKITDIKKIST 158 (377)
T ss_pred CEEEECC--CccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEE--------CCCCCCCcccCHHHHHH
Confidence 3566654 555543 333 4567789998887532 2333332 34444441 12233343 35777
Q ss_pred HHHhCCCcEEE
Q 006803 590 VAHAFRVPVLI 600 (630)
Q Consensus 590 aAk~~~VPV~V 600 (630)
+|+.++++++|
T Consensus 159 la~~~g~~lvv 169 (377)
T PRK07671 159 IAKEKGLLTIV 169 (377)
T ss_pred HHHHcCCEEEE
Confidence 88999987776
No 406
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.06 E-value=4.7e+02 Score=29.07 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=52.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEec
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLS 574 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~a 574 (630)
..|+.+|-.++=...+......+-.+.|.+.|.++... ....|.+ ||.+.+-... ... +..+|.||+..- |-.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~---~~~~l~~-g~~~~~g~~~-~~~-~~~~d~vV~Spg-I~~ 80 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPP---GQEQLPE-DVELHSGGWN-LEW-LLEADLVVTNPG-IAL 80 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCch---hHHHhhc-CCEEEeCCCC-hHH-hccCCEEEECCC-CCC
Confidence 34666665554444555544444348999999887542 2345654 8877654212 222 367888876542 211
Q ss_pred CCceecccchHHHHHHHHhCCCcEEE
Q 006803 575 NGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 575 NG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+...-..|++.+||++-
T Consensus 81 ---------~~p~~~~a~~~gi~i~~ 97 (438)
T PRK04663 81 ---------ATPEIQQVLAAGIPVVG 97 (438)
T ss_pred ---------CCHHHHHHHHCCCcEEE
Confidence 23566677778888763
No 407
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=24.99 E-value=2.2e+02 Score=28.52 Aligned_cols=92 Identities=13% Similarity=0.009 Sum_probs=49.3
Q ss_pred EEeecChHHHHHH-HHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecC
Q 006803 497 LLTYGSSCVVEMI-LLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSN 575 (630)
Q Consensus 497 ILT~g~S~tV~~v-L~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aN 575 (630)
||..|-++.+=.- ++.+.++| ++|+++.-.+..... +. ..+ +..+.+......+..+|.||--|-....+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~----~~~--~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG--HEVTILTRSPPAGAN-TK----WEG--YKPWAPLAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC--CEEEEEeCCCCCCCc-cc----cee--eecccccchhhhcCCCCEEEECCCCCccc
Confidence 4667777765433 33444555 567766644432211 10 011 11111122334456788888766433322
Q ss_pred Cce----------ecccchHHHHHHHHhCCCc
Q 006803 576 GTT----------YSRVGTACVAMVAHAFRVP 597 (630)
Q Consensus 576 G~V----------~NKiGT~~lAlaAk~~~VP 597 (630)
++. .|-.||..+.-+|+++++.
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 322 3778899999999999873
No 408
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=24.94 E-value=99 Score=28.43 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=46.3
Q ss_pred cChHHHHHHHHHHHHc--CCceEEEEcCCC--CCchH-HHHHHHHHhCCCcEE-EEcchhHHHHhccccEEEEcce
Q 006803 501 GSSCVVEMILLYAHEL--GKQFRVVVVDSR--PKHEG-QALLRRLLAKGLSCT-YTHINAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 501 g~S~tV~~vL~~A~e~--gk~f~ViV~ESR--P~~eG-~~La~eL~~~GI~vT-lI~DsAv~~iM~~Vd~VivGAd 570 (630)
|+|-.++.++++..++ +..|.|+-.-+. |...= ......|.+.||+.. ..+-.--...+.+.|+||.=.+
T Consensus 10 cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~~~~~s~~l~~~~~~~~D~Ii~m~~ 85 (138)
T PF01451_consen 10 CRSPMAEAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDISGHRSRQLTEEDLDEADLIITMDD 85 (138)
T ss_dssp SHHHHHHHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSCTTSBBCBGGHHHHHHSSEEEESSH
T ss_pred chHHHHHHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCcccceeccccccccccCCEEEEccH
Confidence 6777889999887553 678999877666 33322 233488999999876 3333333455668899876544
No 409
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.90 E-value=2.9e+02 Score=25.84 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=57.3
Q ss_pred EEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--c-hhHHHHhccccEEEEcceeE
Q 006803 497 LLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--I-NAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 497 ILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGAdaI 572 (630)
||..|-++-+ ..++..+.++| ++|+++--+|.. +-. ..++.+.... | .++...|..+|.||.-+-.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~----~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~- 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSK----AED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP- 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGG----HHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS-
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchh----ccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh-
Confidence 6777766644 46666666766 566655444432 111 4455443332 2 3566677788888775511
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEeccccccc
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFH 608 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~ 608 (630)
+.. ..-++-.+.-+++.++++-+|+..+....
T Consensus 71 --~~~--~~~~~~~~~~a~~~~~~~~~v~~s~~~~~ 102 (183)
T PF13460_consen 71 --PPK--DVDAAKNIIEAAKKAGVKRVVYLSSAGVY 102 (183)
T ss_dssp --TTT--HHHHHHHHHHHHHHTTSSEEEEEEETTGT
T ss_pred --hcc--cccccccccccccccccccceeeeccccC
Confidence 111 25556666677788999988886665543
No 410
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.85 E-value=1e+03 Score=26.63 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=56.9
Q ss_pred CCEEEeecChHHHHHHHHHHH-HcCCceEEEEcCCC-CCchHHHHHHHHHhCCCcE--EEEcch-hHHHHhccccEEEE-
Q 006803 494 GDVLLTYGSSCVVEMILLYAH-ELGKQFRVVVVDSR-PKHEGQALLRRLLAKGLSC--TYTHIN-AVSYIMHEVTRVFL- 567 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~-e~gk~f~ViV~ESR-P~~eG~~La~eL~~~GI~v--TlI~Ds-Av~~iM~~Vd~Viv- 567 (630)
|.++..++-...+..+-.-+. +.|....++++... |......+..+|...|+.. .++.|. .+.-.+.+.+ +-
T Consensus 293 ~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~D~~~~~~~i~~~~--~~~ 370 (427)
T cd01971 293 PRRFAVIADSTYALGLARFLVNELGWVPAKQVITDNPPEKYRSAIENEFEAEGVSAEVVFSEDGYAIGQSLRQSD--FKY 370 (427)
T ss_pred CceEEEECChHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHhcCCCCcEEEecCHHHHHHHHHhCC--CCC
Confidence 577888888888888777664 78888776665544 4444444445565566544 334443 3333333221 00
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
++|-|+ |+..---+|++.++|++.++
T Consensus 371 ~~dlii---------g~s~~~~~a~~~~ip~i~~~ 396 (427)
T cd01971 371 KPPIIF---------GSSWERDLAKELGGKILEVS 396 (427)
T ss_pred CCCEEE---------echHHHHHHHHcCCCeEEEe
Confidence 022222 33334457888999999665
No 411
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=24.76 E-value=2.5e+02 Score=32.03 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=42.2
Q ss_pred CCEEEeecChH--HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHH-HhCCC--cEEEEcchhHHHHhc-cccEEE
Q 006803 494 GDVLLTYGSSC--VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRL-LAKGL--SCTYTHINAVSYIMH-EVTRVF 566 (630)
Q Consensus 494 gdvILT~g~S~--tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL-~~~GI--~vTlI~DsAv~~iM~-~Vd~Vi 566 (630)
+.+||..|..+ .+...+..+.+.+...+||.+|-.|.-- ..++.+ ...|. .||+|...+=-.-++ +||.+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~--~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV--VTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH--HHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH--HHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 46899988665 4555666666678899999999887531 222333 44443 588887544333333 566654
No 412
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=24.67 E-value=4.2e+02 Score=25.97 Aligned_cols=104 Identities=15% Similarity=0.054 Sum_probs=53.8
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHH-------hcc
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYI-------MHE 561 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~i-------M~~ 561 (630)
.+||..|.++-+- .+.+...++| .+|+++..++. ....+..+|...+..+.++ +| .++..+ +..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g--~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG--ANVVVNDLGEA-GAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC--CEEEEEeCCHH-HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3577777666543 3333444445 47887766542 3344455665555555433 22 222222 235
Q ss_pred ccEEEEcceeEecCCc-------------eecccchHHHHHHH----HhCCCcEEEec
Q 006803 562 VTRVFLGASSVLSNGT-------------TYSRVGTACVAMVA----HAFRVPVLICC 602 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~-------------V~NKiGT~~lAlaA----k~~~VPV~V~a 602 (630)
+|.||..|-... .+. -.|-.|+..+.-.+ +.+++..+|..
T Consensus 79 ~d~vi~~a~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ 135 (255)
T TIGR01963 79 LDILVNNAGIQH-VAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINI 135 (255)
T ss_pred CCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 788877664321 111 13667777776655 44566655544
No 413
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=24.62 E-value=3e+02 Score=31.33 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=50.4
Q ss_pred HHHHHHHHhhccCCCEEEeecChH----HHHHHHHHHH-HcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH
Q 006803 481 KVIVRHAATKVRDGDVLLTYGSSC----VVEMILLYAH-ELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV 555 (630)
Q Consensus 481 ~~Ia~~a~~~I~dgdvILT~g~S~----tV~~vL~~A~-e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv 555 (630)
+..++...+.|..+..|+.|+.-. |--.+|..+. +.|..+.+++....=..-| ....+...+.+..+++|+..
T Consensus 23 ~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~liItvD~G~ 100 (491)
T COG0608 23 EKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG--AIRKLKEEGADLIITVDNGS 100 (491)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccch--HHHHHHhcCCCEEEEECCCc
Confidence 344445566777788887775322 2223333333 3588999999887655556 33578899999999999877
Q ss_pred HHH
Q 006803 556 SYI 558 (630)
Q Consensus 556 ~~i 558 (630)
+.+
T Consensus 101 ~~~ 103 (491)
T COG0608 101 GSL 103 (491)
T ss_pred ccH
Confidence 665
No 414
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=24.56 E-value=4.1e+02 Score=28.88 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=52.5
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCC-----------cEEEEcchhH-HHH
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGL-----------SCTYTHINAV-SYI 558 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI-----------~vTlI~DsAv-~~i 558 (630)
+...++|+|.|.+..+.. |......|. +|+| ..|.+.+...+.+ ..|+ .++.+....- .+.
T Consensus 93 ~~~d~I~it~Ga~~al~~-l~~l~~~gd--~Vlv--~~P~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 165 (402)
T TIGR03542 93 IDPEEIFISDGAKCDVFR-LQSLFGSDN--TVAV--QDPVYPAYVDSNV--MAGRAGVLDDDGRYSKITYLPCTKENNFI 165 (402)
T ss_pred CCHHHEEECCCcHHHHHH-HHHhcCCCC--EEEE--eCCCCcchHHHHH--HcCCccccccccccceEEEeecchhhCCC
Confidence 555678888888776654 444444443 3444 4466666554433 3455 6666653221 111
Q ss_pred h-----ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 559 M-----HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 559 M-----~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+ .++++|+|. .-=-..|.++++-=-..|+-.|++|++.+++
T Consensus 166 ~~~~~~~~~~~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 211 (402)
T TIGR03542 166 PDLPEEPKIDIIYLC-SPNNPTGTVLTKEQLKELVDYANEHGSLILF 211 (402)
T ss_pred CCccccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 1 234444442 1111113333333345677778889986654
No 415
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=24.55 E-value=8.8e+02 Score=25.88 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=46.1
Q ss_pred CEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHH--HHHHhCCCcEEEEcch---------hHHHHhcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALL--RRLLAKGLSCTYTHIN---------AVSYIMHE 561 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~Ds---------Av~~iM~~ 561 (630)
.+++| +++..+...+..+.. .++.-+|++.+ |.+-+.... ......|+.+.++... .+-..+..
T Consensus 79 ~v~~~-~~~t~~l~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~ 155 (397)
T TIGR01976 79 EVVFG-ANATSLTFLLSRAISRRWGPGDEVIVTR--LDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSP 155 (397)
T ss_pred eEEEe-CCHHHHHHHHHHHHHhcCCCCCEEEEcC--CchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCC
Confidence 44444 344433333333331 22334677655 333232222 2335578888776421 12222222
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
-+++++-++.-..+|.+.. .-.|+-+|+.||+.|+|
T Consensus 156 ~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 191 (397)
T TIGR01976 156 RTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVV 191 (397)
T ss_pred CceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 2233333322233444432 34577778889987776
No 416
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=24.40 E-value=3e+02 Score=26.95 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=44.5
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCC--cEEEEcchhHHHHh---cccc
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGL--SCTYTHINAVSYIM---HEVT 563 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI--~vTlI~DsAv~~iM---~~Vd 563 (630)
-+..|++||-+|...-...+ ..|...+..-+|+.+|-.|.. ..++ +.+...|+ +++++...+..++. ...|
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~-~~a~~~~~~~~v~avD~~~~~--~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTV-EASLLVGETGKVYAVDKDEKA--INLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHH-HHHHHhCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 35678899998876532211 112223455689999998763 3344 34555674 57777655543322 2477
Q ss_pred EEEEc
Q 006803 564 RVFLG 568 (630)
Q Consensus 564 ~VivG 568 (630)
.||+|
T Consensus 114 ~V~~~ 118 (198)
T PRK00377 114 RIFIG 118 (198)
T ss_pred EEEEC
Confidence 77774
No 417
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=24.37 E-value=61 Score=35.72 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHH-HHhCCCcEEEe
Q 006803 535 ALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMV-AHAFRVPVLIC 601 (630)
Q Consensus 535 ~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAla-Ak~~~VPV~V~ 601 (630)
.+..+|.+.||...++.-+..+.-|..+|+||- ..|+ ||+.+|.- -..-++||+=+
T Consensus 79 ~~~~~l~k~giesklv~R~~lsq~i~waD~Vis------vGGD-----GTfL~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 79 FCQEELSKAGIESKLVSRNDLSQPIRWADMVIS------VGGD-----GTFLLAASRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHHhhCCcceeeeehhhccCcCchhhEEEE------ecCc-----cceeehhhhhhccCCceeee
Confidence 355899999999999999999999999999974 1222 55554432 22357999854
No 418
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=24.36 E-value=2.6e+02 Score=31.02 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=70.3
Q ss_pred CCEEEee--cChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHH----HHHHHHh-C-CCcEEEEcchh--HHHHhcccc
Q 006803 494 GDVLLTY--GSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQA----LLRRLLA-K-GLSCTYTHINA--VSYIMHEVT 563 (630)
Q Consensus 494 gdvILT~--g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~----La~eL~~-~-GI~vTlI~DsA--v~~iM~~Vd 563 (630)
|--|.-+ -+-.++..+|..|-+.+..+-+-+.++.=.+-|.. +++.+.+ . +|||.+-+|.+ .-.++.-++
T Consensus 17 ~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~ 96 (347)
T PRK13399 17 GYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIR 96 (347)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHh
Confidence 4444433 35568888888887766654444444332334433 3344543 3 49999999976 445554455
Q ss_pred EEEEcceeEecCCcee-----------cccchHHHHHHHHhCCCcEE
Q 006803 564 RVFLGASSVLSNGTTY-----------SRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~-----------NKiGT~~lAlaAk~~~VPV~ 599 (630)
.|-++|+-||+-. |--=|-.+.-.||.+||.|=
T Consensus 97 ---~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 97 ---SGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred ---cCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5899999999988 77889999999999998875
No 419
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=24.35 E-value=6.6e+02 Score=26.77 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=49.8
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-h---------HHHHhc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-A---------VSYIMH 560 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-A---------v~~iM~ 560 (630)
+...++|+|.|.+..+..++. +... . +|++ ..|.+.... ..+...|+.+..+... . ...+..
T Consensus 69 ~~~~~i~it~Ga~~~l~~~~~-~~~~--~-~v~i--~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (354)
T PRK06358 69 LDLENVILGNGATELIFNIVK-VTKP--K-KVLI--LAPTFAEYE--RALKAFDAEIEYAELTEETNFAANEIVLEEIKE 140 (354)
T ss_pred CChhhEEECCCHHHHHHHHHH-HhCC--C-cEEE--ecCChHHHH--HHHHHcCCeeEEEeCccccCCCccHHHHHhhcc
Confidence 455577888877666554444 3322 2 4554 345554433 3345567777666421 1 122222
Q ss_pred cccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
+++.|++- |= -|.+|+. .++-+|+.|++.+++
T Consensus 141 ~~~~v~~~------~P--~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 141 EIDLVFLC------NP--NNPTGQLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred CCCEEEEe------CC--CCCCCCccCHHHHHHHHHHHHhcCCEEEE
Confidence 44555441 21 3666654 456678889987665
No 420
>PRK12361 hypothetical protein; Provisional
Probab=24.32 E-value=2.8e+02 Score=31.97 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=33.9
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHH
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLL 541 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~ 541 (630)
.|.|+..|--+|+..++..+...+..+-|| |...|-.+++.|.
T Consensus 298 ~d~Viv~GGDGTl~ev~~~l~~~~~~lgii-----P~GTgNdfAr~L~ 340 (547)
T PRK12361 298 ADIVIACGGDGTVTEVASELVNTDITLGII-----PLGTANALSHALF 340 (547)
T ss_pred CCEEEEECCCcHHHHHHHHHhcCCCCEEEe-----cCCchhHHHHHhc
Confidence 379999999999999998887555555566 7788888888773
No 421
>PRK07179 hypothetical protein; Provisional
Probab=24.24 E-value=6.4e+02 Score=27.34 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=47.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--c-hhHHHHhcc--ccEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--I-NAVSYIMHE--VTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~--Vd~VivG 568 (630)
..+|+|.|-+.....+|......| -+|++.. +..-. +...+...|+.+..+. | ..+...+.+ ...|++
T Consensus 115 ~~~~~~~sG~~An~~~l~~l~~~g--~~v~~~~--~~h~s--~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v- 187 (407)
T PRK07179 115 ESCLLCQSGWAANVGLLQTIADPN--TPVYIDF--FAHMS--LWEGVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVV- 187 (407)
T ss_pred CcEEEECCHHHHHHHHHHHhCCCC--CEEEEEC--CcCHH--HHHHHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEE-
Confidence 356665554445555555443333 3566532 22111 1222334577665552 2 344444543 223333
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+.+....+.+..+ -.|+-+|+.|++.++|
T Consensus 188 -~~v~n~tG~i~pl--~~I~~l~~~~~~~liv 216 (407)
T PRK07179 188 -DSVYSTTGTIAPL--ADIVDIAEEFGCVLVV 216 (407)
T ss_pred -CCCCCCCCccccH--HHHHHHHHHcCCEEEE
Confidence 4454443444443 4677788999986655
No 422
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=24.21 E-value=1.1e+02 Score=33.96 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=25.1
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCC
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR 528 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR 528 (630)
.||..|++.....+++.|++.| ++|+++++.
T Consensus 4 kili~g~g~~~~~~~~aa~~lG--~~vv~~~~~ 34 (449)
T TIGR00514 4 KILIANRGEIALRILRACKELG--IKTVAVHST 34 (449)
T ss_pred eEEEeCCCHHHHHHHHHHHHcC--CeEEEEECh
Confidence 6899999999999999998865 566666553
No 423
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=24.14 E-value=1.8e+02 Score=30.19 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=24.0
Q ss_pred eecccchHHHHHHHHhCCCcEEEecccccc
Q 006803 578 TYSRVGTACVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 578 V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf 607 (630)
-+|-.||..++-+|+.++++|+.+.-.+=|
T Consensus 79 ~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 79 LLNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 368899999999999999987766555544
No 424
>PRK09148 aminotransferase; Validated
Probab=24.12 E-value=4.7e+02 Score=28.49 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=53.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-------hHHHHh----cccc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-------AVSYIM----HEVT 563 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~iM----~~Vd 563 (630)
++++|.|.+..+..++......|. +|++. .|.+.+..... ...|+.+..+... .+-.++ .+..
T Consensus 94 ~I~it~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~ 167 (405)
T PRK09148 94 QVVATLGSKEGFANMAQAITAPGD--VILCP--NPSYPIHAFGF--IMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPI 167 (405)
T ss_pred cEEEcCChHHHHHHHHHHhcCCCC--EEEEc--CCCCcccHHHH--HhcCCEEEEEeCCCCCCCccCHHHHHhhccccce
Confidence 689999988876666555444443 45543 47777665443 3468887666421 111222 2334
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|++-- -=-..|.+++.-=-..|+-+|+.|++.+++
T Consensus 168 ~v~l~~-P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 203 (405)
T PRK09148 168 ALIVNY-PSNPTAYVADLDFYKDVVAFAKKHDIIILS 203 (405)
T ss_pred EEEEeC-CCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 443320 001225555443334566778889885553
No 425
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=24.12 E-value=6e+02 Score=25.54 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN 553 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds 553 (630)
.+.+|++.+.+.+...+-..|...|.++.|++.+.-|. .-...|...|..+..+...
T Consensus 49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~----~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASP----EKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHCCCEEEEECCC
Confidence 35788888776777777777777888888888776531 2235566667777766543
No 426
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=24.02 E-value=7e+02 Score=24.56 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=55.6
Q ss_pred CCEEEeecChH------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCC--cEEEEc-chhHHHHhccccE
Q 006803 494 GDVLLTYGSSC------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGL--SCTYTH-INAVSYIMHEVTR 564 (630)
Q Consensus 494 gdvILT~g~S~------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI~-DsAv~~iM~~Vd~ 564 (630)
..+|+..|+-. .+..++....+.+..++++++-..+..+-.... .+.+.+. .++++- ..-+..+|..+|.
T Consensus 188 ~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~adi 266 (359)
T cd03808 188 DPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL-EIEKLGLEGRVEFLGFRDDVPELLAAADV 266 (359)
T ss_pred CcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH-HHHhcCCcceEEEeeccccHHHHHHhccE
Confidence 45677766433 345555555555677888887766544322211 1333332 344432 3457778889999
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+++.... . |.-...+=|-.+|+||++.
T Consensus 267 ~i~ps~~---e-------~~~~~~~Ea~~~G~Pvi~s 293 (359)
T cd03808 267 FVLPSYR---E-------GLPRVLLEAMAMGRPVIAT 293 (359)
T ss_pred EEecCcc---c-------CcchHHHHHHHcCCCEEEe
Confidence 8876432 1 2223455677789999874
No 427
>PLN02686 cinnamoyl-CoA reductase
Probab=23.96 E-value=4.9e+02 Score=28.11 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=60.1
Q ss_pred cCCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCC------CcEEEE----cc-hhHHHHh
Q 006803 492 RDGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKG------LSCTYT----HI-NAVSYIM 559 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~G------I~vTlI----~D-sAv~~iM 559 (630)
..+.+||..|-++.+= .+...+.++| .+|+++...+ ..-..+ ..|...| -.++++ +| ..+..++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G--~~V~~~~r~~-~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG--YSVRIAVDTQ-EDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 4567899999888664 4444455555 4555432111 111112 3332211 123333 23 3456667
Q ss_pred ccccEEEEcceeEecCCc---------eecccchHHHHHHHHhC-CCcEEEeccc
Q 006803 560 HEVTRVFLGASSVLSNGT---------TYSRVGTACVAMVAHAF-RVPVLICCEA 604 (630)
Q Consensus 560 ~~Vd~VivGAdaI~aNG~---------V~NKiGT~~lAlaAk~~-~VPV~V~aet 604 (630)
..+|.|| ..+.+..+++ -+|-.||..+.-+|+.. +|+=+|.+.+
T Consensus 127 ~~~d~V~-hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS 180 (367)
T PLN02686 127 DGCAGVF-HTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSS 180 (367)
T ss_pred HhccEEE-ecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEecc
Confidence 7899887 5666654443 24677898888888875 7875555444
No 428
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=23.94 E-value=3.2e+02 Score=27.18 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=61.8
Q ss_pred HHHHHhhccCCCEEEeec--ChHH---HH-HHHHHHHHcC-----CceEEEEcC---CC-----------------CCch
Q 006803 484 VRHAATKVRDGDVLLTYG--SSCV---VE-MILLYAHELG-----KQFRVVVVD---SR-----------------PKHE 532 (630)
Q Consensus 484 a~~a~~~I~dgdvILT~g--~S~t---V~-~vL~~A~e~g-----k~f~ViV~E---SR-----------------P~~e 532 (630)
++.|+.+|++|+.|.+-+ ..+. +. .+..++.+.. ..+.++... .. +++-
T Consensus 12 a~eA~~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~~~~~~~~~~~~~s~f~ 91 (198)
T PF02550_consen 12 AEEAASLIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPYLAPESAFHFRHNSFFV 91 (198)
T ss_dssp HHHHHTTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCCHSGCCTCCEEEEESS-
T ss_pred HHHHHHhCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccccchhhhhhcccCcccC
Confidence 457889999999999887 4442 22 3332333321 235555544 12 2333
Q ss_pred HHHHHHHHHhCC-CcEEEEcchhHHHHhc----cccEEEEcceeEecCCceecccchHHHHHHHHh
Q 006803 533 GQALLRRLLAKG-LSCTYTHINAVSYIMH----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA 593 (630)
Q Consensus 533 G~~La~eL~~~G-I~vTlI~DsAv~~iM~----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~ 593 (630)
|. ..+.+.+.| ++.+-+..+.+..++. .+|.+|+-+.-+-.+|.+.--+|..-.-.+++.
T Consensus 92 ~~-~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De~Gy~slG~s~~~~~~~ie~ 156 (198)
T PF02550_consen 92 GP-NERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDEHGYFSLGTSVDYTKAAIEQ 156 (198)
T ss_dssp -H-HHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-TTSEEECTTBHBTHHHHHHH
T ss_pred CH-HHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCCCCCEeecHHHHhHHHHHhc
Confidence 33 346666666 4555566788887766 389999999999999988777764444444444
No 429
>PRK13936 phosphoheptose isomerase; Provisional
Probab=23.83 E-value=7.3e+02 Score=24.67 Aligned_cols=36 Identities=0% Similarity=-0.113 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCcEEEEcc---hhHHHHhccccEEEEcc
Q 006803 534 QALLRRLLAKGLSCTYTHI---NAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 534 ~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivGA 569 (630)
.++++.+.+.|+++..||+ +.++-+...+|.+|.-.
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~ 166 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVP 166 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeC
Confidence 3456888889999999988 44444444577776543
No 430
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=23.80 E-value=4e+02 Score=28.08 Aligned_cols=105 Identities=8% Similarity=-0.020 Sum_probs=56.9
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc---c-hhHHHHhccccEEEEccee
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH---I-NAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~---D-sAv~~iM~~Vd~VivGAda 571 (630)
.||..|-++-+=..|..+..+...++|+.++-++. .+...+...++...... | ..+..++..+|.||=-|-.
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~ 78 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD----RLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAI 78 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH----HHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECccc
Confidence 58888988877655554432222367887763221 11121222344433311 1 2344566778887732211
Q ss_pred Ee-----cCCc---eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 572 VL-----SNGT---TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 572 I~-----aNG~---V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.. .+-. -.|-.||..+.-+|+.++..|+.+...
T Consensus 79 ~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~ 119 (347)
T PRK11908 79 ATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred CChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 11 1111 125679999999999888877766544
No 431
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=23.76 E-value=6.2e+02 Score=28.16 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=54.7
Q ss_pred cCCCEEEeecChH-HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcch---hHHHHhc-cccEE
Q 006803 492 RDGDVLLTYGSSC-VVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRV 565 (630)
Q Consensus 492 ~dgdvILT~g~S~-tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~V 565 (630)
..|+-.+.++..- .+...|....+.|. +|++.. .-|..-.++. ..|...||.++++... .+...+. ++.+|
T Consensus 68 e~g~~a~~~~SGmaAi~~~l~~ll~~Gd--~iv~~~-~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v 144 (386)
T PF01053_consen 68 EGGEDALLFSSGMAAISAALLALLKPGD--HIVASD-DLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLV 144 (386)
T ss_dssp HT-SEEEEESSHHHHHHHHHHHHS-TTB--EEEEES-SSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEE
T ss_pred hcccceeeccchHHHHHHHHHhhcccCC--ceEecC-CccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEE
Confidence 3455555554332 23344554444454 455544 3455556666 4688899999999654 3444444 56666
Q ss_pred EEcceeEecCCceecccchHHHHHHHHhCC-CcEEE
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHAFR-VPVLI 600 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~~~-VPV~V 600 (630)
++-. .. |= ...-.=-..++-+||.+| ++++|
T Consensus 145 ~~Es--ps-NP-~l~v~Dl~~i~~~a~~~g~~~~vV 176 (386)
T PF01053_consen 145 FLES--PS-NP-TLEVPDLEAIAKLAKEHGDILVVV 176 (386)
T ss_dssp EEES--SB-TT-TTB---HHHHHHHHHHTTT-EEEE
T ss_pred EEEc--CC-Cc-ccccccHHHHHHHHHHhCCceEEe
Confidence 6542 21 21 122222345778899998 87777
No 432
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.75 E-value=9.8e+02 Score=26.17 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=66.8
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCC---------CCCc-----hHH----HHHHHHHhC-
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDS---------RPKH-----EGQ----ALLRRLLAK- 543 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES---------RP~~-----eG~----~La~eL~~~- 543 (630)
++..+.++|. +.+||..|..++--.++......|.. +++++|. |-.+ -|+ .+++.|.+.
T Consensus 18 ~g~~~q~~L~-~~~VlivG~GGlGs~~a~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 18 IGQQGQQSLF-DAKVAVIGAGGLGSPALLYLAGAGVG-HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred cCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 5555666665 47899999998777777776666754 2232221 2111 121 223566654
Q ss_pred -CCcEEEEc----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 544 -GLSCTYTH----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 544 -GI~vTlI~----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+.++.+. ...+..++..+|.||.+.|.+ .--+.+.-+|+.++|||+.+
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~---------~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNF---------DTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEE
Confidence 35554442 223345678899999988753 23356888999999998865
No 433
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=23.72 E-value=3.2e+02 Score=27.81 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=51.4
Q ss_pred hccCCCEEEeecChH-HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcchhHHHHhc---cccE
Q 006803 490 KVRDGDVLLTYGSSC-VVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHINAVSYIMH---EVTR 564 (630)
Q Consensus 490 ~I~dgdvILT~g~S~-tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~---~Vd~ 564 (630)
-+++|+.++.+|..+ +|- +..| ..+..-+||.+|..+. ..+++ +.+.+.|++--.+.-.-+..+++ +.|.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~--iE~a-~~~p~~~v~AIe~~~~--a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSIT--IEWA-LAGPSGRVIAIERDEE--ALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCCCEEEEeCCCccHHH--HHHH-HhCCCceEEEEecCHH--HHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 457899999997654 321 2222 3477889999998654 55666 77889999866666666666655 4788
Q ss_pred EEEc
Q 006803 565 VFLG 568 (630)
Q Consensus 565 VivG 568 (630)
+|+|
T Consensus 106 iFIG 109 (187)
T COG2242 106 IFIG 109 (187)
T ss_pred EEEC
Confidence 8887
No 434
>PLN00203 glutamyl-tRNA reductase
Probab=23.68 E-value=4.3e+02 Score=30.72 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=45.5
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
+..|+.+|.......++..+...|. -+|+|+. |-......|+.++. |+.+.++........+.++|.||..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~n-Rs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVN-RSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEe-CCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEc
Confidence 6789999998888888887776552 2466664 32222334444442 5556665544556677889998875
No 435
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=23.49 E-value=9.3e+02 Score=25.76 Aligned_cols=31 Identities=6% Similarity=0.180 Sum_probs=18.7
Q ss_pred eeEecC-Cceecccc-hHHHHHHHHhCCCcEEE
Q 006803 570 SSVLSN-GTTYSRVG-TACVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~aN-G~V~NKiG-T~~lAlaAk~~~VPV~V 600 (630)
+-+..+ |.++..-+ -..|.-+|+.|++.+++
T Consensus 198 ~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 230 (413)
T cd00610 198 EPIQGEGGVIVPPPGYLKALRELCRKHGILLIA 230 (413)
T ss_pred ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 335555 43343333 45667778889988765
No 436
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=23.48 E-value=3e+02 Score=26.02 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.1
Q ss_pred EEcceeEecC
Q 006803 566 FLGASSVLSN 575 (630)
Q Consensus 566 ivGAdaI~aN 575 (630)
+++...+..+
T Consensus 111 ~~~~~~~~~~ 120 (202)
T cd04185 111 FLAPLVLDPD 120 (202)
T ss_pred EecceeEcCC
Confidence 3344444433
No 437
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.44 E-value=5.4e+02 Score=32.45 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=65.4
Q ss_pred CCCEEEeec--ChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc------hhHHHHhc-ccc
Q 006803 493 DGDVLLTYG--SSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI------NAVSYIMH-EVT 563 (630)
Q Consensus 493 dgdvILT~g--~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D------sAv~~iM~-~Vd 563 (630)
.|.++++.+ ...-++.+....++ ..|++|.++. .++.|.+.||+|+.|.. +-.-.++. ++|
T Consensus 937 ~~~~lisv~~~dK~~l~~~a~~l~~--~G~~i~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id 1006 (1066)
T PRK05294 937 SGTVFLSVRDRDKEEVVELAKRLLE--LGFKILATSG--------TAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEID 1006 (1066)
T ss_pred CCeEEEEeccccHHHHHHHHHHHHH--cCCEEEEccH--------HHHHHHHCCCeeEEEeeccCcCccHHHHHHcCCeE
Confidence 355677776 33445555555555 4588888775 56889999999988863 23333333 799
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccc
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf 607 (630)
+||--.+ |.- .....|.+=-+|-.+|||++-..++.+.
T Consensus 1007 lvIn~~~-----~~~-~~~~g~~iRr~Av~~~ip~~T~~~~a~~ 1044 (1066)
T PRK05294 1007 LVINTPT-----GRQ-AIRDGFSIRRAALEYKVPYITTLAGARA 1044 (1066)
T ss_pred EEEECCC-----Ccc-cccccHHHHHHHHHcCCCEEecHHHHHH
Confidence 9986542 211 2334678888999999999976655543
No 438
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=23.42 E-value=5.1e+02 Score=24.97 Aligned_cols=107 Identities=22% Similarity=0.187 Sum_probs=57.2
Q ss_pred CCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc-------
Q 006803 494 GDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------- 560 (630)
Q Consensus 494 gdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------- 560 (630)
+.+||..|.|+-+ ..+++...++|. +|+++...+. ....+..++...|...+++ +| ..+..++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEE-AAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChh-HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4577888776654 455555556554 4777765543 3345556676667655443 33 22333333
Q ss_pred cccEEEEcceeEecCCc-------------eecccchHHHHHHH----HhCCCcEEEeccc
Q 006803 561 EVTRVFLGASSVLSNGT-------------TYSRVGTACVAMVA----HAFRVPVLICCEA 604 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~-------------V~NKiGT~~lAlaA----k~~~VPV~V~aet 604 (630)
.+|.||..|-.... +. -.|-.|++.+.-.+ +..+++.+|+..+
T Consensus 82 ~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss 141 (246)
T PRK05653 82 ALDILVNNAGITRD-ALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISS 141 (246)
T ss_pred CCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 45888777643221 11 13455666665444 2345565655433
No 439
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=23.42 E-value=3.5e+02 Score=27.32 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=55.6
Q ss_pred EEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEE---EcchhHHHHhcc--ccEEEEcc
Q 006803 497 LLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTY---THINAVSYIMHE--VTRVFLGA 569 (630)
Q Consensus 497 ILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTl---I~DsAv~~iM~~--Vd~VivGA 569 (630)
||..|-++.+- .++++..+.|..++|++++..........+..+.. .++.+.. .....+..++.. +|.||-.|
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a 81 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFA 81 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEcc
Confidence 66667766553 44444545555578888764222111111222221 2343321 112455566665 88888766
Q ss_pred eeEecCC--------ceecccchHHHHHHHHhC--CCcEEEecc
Q 006803 570 SSVLSNG--------TTYSRVGTACVAMVAHAF--RVPVLICCE 603 (630)
Q Consensus 570 daI~aNG--------~V~NKiGT~~lAlaAk~~--~VPV~V~ae 603 (630)
-....+- --.|-.|+..++-+|+++ ++.++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss 125 (317)
T TIGR01181 82 AESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIST 125 (317)
T ss_pred cccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeec
Confidence 4332111 124677888888888875 456555443
No 440
>PLN02427 UDP-apiose/xylose synthase
Probab=23.35 E-value=3.4e+02 Score=29.24 Aligned_cols=102 Identities=8% Similarity=0.005 Sum_probs=58.1
Q ss_pred CEEEeecChHHHHHHH-HHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCC-----CcEEEEc----c-hhHHHHhcccc
Q 006803 495 DVLLTYGSSCVVEMIL-LYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKG-----LSCTYTH----I-NAVSYIMHEVT 563 (630)
Q Consensus 495 dvILT~g~S~tV~~vL-~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~G-----I~vTlI~----D-sAv~~iM~~Vd 563 (630)
.+||..|-++.+=.-| +.+.++| ..+|++++.++.. ...|...+ -.++++. | ..+..++..+|
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~-----~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDK-----IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchh-----hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 4799999988775444 4444442 3577777643321 11222211 1244432 2 35566777899
Q ss_pred EEEEcceeEecCC--------ceecccchHHHHHHHHhCCCcEEEec
Q 006803 564 RVFLGASSVLSNG--------TTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 564 ~VivGAdaI~aNG--------~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.||=-|-.+.... -..|-+||..+.-+|++++..|+.+.
T Consensus 89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~S 135 (386)
T PLN02427 89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFS 135 (386)
T ss_pred EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 8886553221111 12577899998888988886665554
No 441
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=23.34 E-value=1.9e+02 Score=29.53 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=44.8
Q ss_pred CCCchHHHHHHHHHhCCCcEEEEcc---hhH---HHHhccccEEEEcceeEecC-----------CceecccchHHHHHH
Q 006803 528 RPKHEGQALLRRLLAKGLSCTYTHI---NAV---SYIMHEVTRVFLGASSVLSN-----------GTTYSRVGTACVAMV 590 (630)
Q Consensus 528 RP~~eG~~La~eL~~~GI~vTlI~D---sAv---~~iM~~Vd~VivGAdaI~aN-----------G~V~NKiGT~~lAla 590 (630)
.+..+...+++.|.+.||++.-|+- ++. ..+-++..-++|||-.|+.- -.++++.-+-.++-.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v~~~ 96 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPELAKH 96 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 3455667777888888877655543 322 22223444577777666521 124555556678888
Q ss_pred HHhCCCcEEE
Q 006803 591 AHAFRVPVLI 600 (630)
Q Consensus 591 Ak~~~VPV~V 600 (630)
|+++++|++-
T Consensus 97 ~~~~~i~~iP 106 (204)
T TIGR01182 97 AQDHGIPIIP 106 (204)
T ss_pred HHHcCCcEEC
Confidence 8888888884
No 442
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.18 E-value=1.1e+03 Score=26.75 Aligned_cols=73 Identities=7% Similarity=0.047 Sum_probs=41.8
Q ss_pred CCCEEEeecChH-----HHHHHHHHHHHcCCceEEEEcCCCCCchHH--HHHHHHHhCCCcEEEEcchh-HHHHh-----
Q 006803 493 DGDVLLTYGSSC-----VVEMILLYAHELGKQFRVVVVDSRPKHEGQ--ALLRRLLAKGLSCTYTHINA-VSYIM----- 559 (630)
Q Consensus 493 dgdvILT~g~S~-----tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~--~La~eL~~~GI~vTlI~DsA-v~~iM----- 559 (630)
.+.+|+..|-++ ++..+-..+.++|+ +|.++++-|+.-|. .|...-...|+++....|.. +...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~--~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNR--TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 466777776544 45555445555554 56666666776655 34344445788887766532 22221
Q ss_pred -ccccEEEE
Q 006803 560 -HEVTRVFL 567 (630)
Q Consensus 560 -~~Vd~Viv 567 (630)
..+|.|||
T Consensus 283 ~~~~D~VLI 291 (407)
T PRK12726 283 VNCVDHILI 291 (407)
T ss_pred cCCCCEEEE
Confidence 24788877
No 443
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=23.11 E-value=2e+02 Score=25.50 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=44.4
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH-------HHhccccEEEEc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS-------YIMHEVTRVFLG 568 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~-------~iM~~Vd~VivG 568 (630)
.++|.|-++.+..+|-. ..|...+.+.|+.+.+.+-...+ .-+..+|.||+-
T Consensus 2 ~~i~ac~~G~a~s~laa---------------------~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~ 60 (96)
T cd05569 2 VAVTACPTGIAHTYMAA---------------------EALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILA 60 (96)
T ss_pred EEEEECCCchhHHHHHH---------------------HHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEe
Confidence 46788888876655532 12446667778777766544432 445678999887
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+|.-..+ ++.-++|+|-+.
T Consensus 61 ~~~~~~~---------------~rf~gk~v~~~~ 79 (96)
T cd05569 61 ADVPVDD---------------ERFAGKRVYEVS 79 (96)
T ss_pred cCCCCch---------------hhhCCCeEEEec
Confidence 7665322 455677777653
No 444
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.10 E-value=5.9e+02 Score=24.16 Aligned_cols=39 Identities=5% Similarity=-0.038 Sum_probs=26.4
Q ss_pred hccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 559 MHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
+.+=|.+|+ |...| +.--+..++-.||.+|+|+++++..
T Consensus 77 ~~~~D~~i~----iS~sG---~t~~~~~~~~~a~~~g~~ii~iT~~ 115 (154)
T TIGR00441 77 GQKGDVLLG----ISTSG---NSKNVLKAIEAAKDKGMKTITLAGK 115 (154)
T ss_pred CCCCCEEEE----EcCCC---CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345566664 33344 2344667888999999999999763
No 445
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=22.97 E-value=3.4e+02 Score=32.18 Aligned_cols=115 Identities=17% Similarity=0.095 Sum_probs=72.8
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhC---CCcEEEEcc----hhHHHHhcc--c
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAK---GLSCTYTHI----NAVSYIMHE--V 562 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~---GI~vTlI~D----sAv~~iM~~--V 562 (630)
.|.+||..|-.+.+- .+++...+. ..-++++.+-.-+ -=..|-.+|.+. ---..+|.| ..+-++|.. +
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~-~p~~i~l~~~~E~-~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKF-NPKEIILFSRDEY-KLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhc-CCCEEEEecCchH-HHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 478899988877664 333333333 2334444443322 223345777763 222455665 567888886 9
Q ss_pred cEEEEccee----Ee----cCCceecccchHHHHHHHHhCCCcEEEecccccccc
Q 006803 563 TRVFLGASS----VL----SNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHE 609 (630)
Q Consensus 563 d~VivGAda----I~----aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~ 609 (630)
|.|+=.|-- ++ .-|---|-.||..+|-+|.+++|.-+|+-.|.|=..
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~ 381 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVN 381 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccC
Confidence 999876520 00 112224789999999999999999999999988654
No 446
>PRK10637 cysG siroheme synthase; Provisional
Probab=22.96 E-value=3.5e+02 Score=30.56 Aligned_cols=94 Identities=15% Similarity=0.039 Sum_probs=64.8
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|..||..|-..++..=++...+.|-+++||-.+-.|.+ .+|...| .++++...-....+..+++||...|-=
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~------~~l~~~~-~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF------TAWADAG-MLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH------HHHHhCC-CEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 478899999999887766666677888888754433222 3444444 567777665556677888887776433
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
--| ..++-.|+..+++|.|+-
T Consensus 84 ~~n---------~~i~~~a~~~~~lvN~~d 104 (457)
T PRK10637 84 AVN---------QRVSEAAEARRIFCNVVD 104 (457)
T ss_pred HHh---------HHHHHHHHHcCcEEEECC
Confidence 222 457888999999998874
No 447
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=22.95 E-value=4.7e+02 Score=27.53 Aligned_cols=51 Identities=16% Similarity=0.301 Sum_probs=22.9
Q ss_pred CEEE-eecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006803 495 DVLL-TYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 495 dvIL-T~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 551 (630)
.+++ |.|.+..+..++....+.|. +|++.+ |.+.+... .+...|+.+..+.
T Consensus 88 ~i~~~~~Ga~~~i~~~~~~~~~~gd--~vlv~~--p~y~~~~~--~~~~~g~~~~~~~ 139 (361)
T PRK00950 88 NIIVGGDGMDEVIDTLMRTFIDPGD--EVIIPT--PTFSYYEI--SAKAHGAKPVYAK 139 (361)
T ss_pred HEEEeCCCHHHHHHHHHHHhcCCCC--EEEEcC--CChHHHHH--HHHHcCCEEEEee
Confidence 3455 44444433333333222232 455444 55443332 2445677776664
No 448
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=22.82 E-value=3.1e+02 Score=33.77 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred HHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceE-EEEcCCCCCchHHHHHHHHH-hCCCcEEEEcch--hHH
Q 006803 481 KVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFR-VVVVDSRPKHEGQALLRRLL-AKGLSCTYTHIN--AVS 556 (630)
Q Consensus 481 ~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~-ViV~ESRP~~eG~~La~eL~-~~GI~vTlI~Ds--Av~ 556 (630)
+.+.++...|+..|+.||-++.|..++.+|......-+.++ +-..-+-|-..=..|+.++. ..-|.|-|+|-- .+|
T Consensus 533 ~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLG 612 (923)
T KOG0387|consen 533 KVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLG 612 (923)
T ss_pred HHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccc
Confidence 45667788899999999999999999998888765323444 33444555554445666666 356777776643 333
Q ss_pred HHhccccEEEE
Q 006803 557 YIMHEVTRVFL 567 (630)
Q Consensus 557 ~iM~~Vd~Viv 567 (630)
.-+-.+|.|||
T Consensus 613 lNLTgAnRVII 623 (923)
T KOG0387|consen 613 LNLTGANRVII 623 (923)
T ss_pred cccccCceEEE
Confidence 33334455543
No 449
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=22.82 E-value=2.5e+02 Score=26.89 Aligned_cols=57 Identities=7% Similarity=-0.050 Sum_probs=23.9
Q ss_pred CEEEeecChHH--HHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc
Q 006803 495 DVLLTYGSSCV--VEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI 552 (630)
Q Consensus 495 dvILT~g~S~t--V~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D 552 (630)
.-|+...+.++ ...++....+....++++..+.+....+... .-+...-=++.+++|
T Consensus 28 ~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n-~g~~~a~gd~i~~lD 86 (224)
T cd06442 28 YEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYI-EGFKAARGDVIVVMD 86 (224)
T ss_pred eEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHH-HHHHHcCCCEEEEEE
Confidence 33444444432 2334444333344455555555444333222 222222226666665
No 450
>PRK00208 thiG thiazole synthase; Reviewed
Probab=22.78 E-value=3.4e+02 Score=28.92 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=41.3
Q ss_pred HHHHHHhCCCcEE-EEcchhH-HHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 536 LLRRLLAKGLSCT-YTHINAV-SYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 536 La~eL~~~GI~vT-lI~DsAv-~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
-+++|.+.|+.+- |++|+-+ +.-+. .++.|.--+.-|-+|-++.| -+.+..+....++||+|=+.-
T Consensus 115 aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~---~~~i~~i~e~~~vpVIveaGI 184 (250)
T PRK00208 115 AAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLN---PYNLRIIIEQADVPVIVDAGI 184 (250)
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCC---HHHHHHHHHhcCCeEEEeCCC
Confidence 3478888888888 7776543 22222 45555544444555555555 455777777789999886543
No 451
>PRK12354 carbamate kinase; Reviewed
Probab=22.77 E-value=2.7e+02 Score=30.32 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=35.3
Q ss_pred HHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcC----CceEEEEcCCCCCchHHHHHHHH
Q 006803 482 VIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELG----KQFRVVVVDSRPKHEGQALLRRL 540 (630)
Q Consensus 482 ~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~g----k~f~ViV~ESRP~~eG~~La~eL 540 (630)
.+++..++++...++|+||||..-|=.++..+.+.. ..|.+.+.+|- .+-|..|...|
T Consensus 30 ~~a~~ia~~~~~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~sq-g~iGy~l~q~l 91 (307)
T PRK12354 30 IAAEQIAKIAREHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAETE-GMIGYMLEQEL 91 (307)
T ss_pred HHHHHHHHHhCCCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhccccc-chHHHHHHHHH
Confidence 344444566665589999999998876666554422 23555555553 34466665443
No 452
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=22.67 E-value=3.7e+02 Score=24.69 Aligned_cols=72 Identities=19% Similarity=0.353 Sum_probs=41.5
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
++.+|+.+|....-..+.....+.| ..+|++++..+. ....++.++...++.+.+... ..++.++|.||+..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLE-KAKALAERFGELGIAIAYLDL---EELLAEADLIINTT 89 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHH-HHHHHHHHHhhcccceeecch---hhccccCCEEEeCc
Confidence 4678888888666556665555554 356777765543 234455555544333333222 22367888888753
No 453
>PRK03903 transaldolase; Provisional
Probab=22.67 E-value=6.2e+02 Score=27.24 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhCCCcEEEEcchhHHHHhc
Q 006803 532 EGQALLRRLLAKGLSCTYTHINAVSYIMH 560 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsAv~~iM~ 560 (630)
+|....++|...||+|..+..-++...+.
T Consensus 85 ~Gl~Ai~~L~~~GI~vn~TliFS~~Qa~~ 113 (274)
T PRK03903 85 AGYEAMSALMKKGISVNATLIFSPEQAKE 113 (274)
T ss_pred HHHHHHHHHHHCCCcEEEeeecCHHHHHH
Confidence 89999999999999998877755554444
No 454
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=22.65 E-value=2.2e+02 Score=31.32 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=42.5
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEE-EEcchhHHHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCT-YTHINAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRV 596 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vT-lI~DsAv~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~V 596 (630)
.+|.++-.-+...-..|.+.|.+.||.+. .++|.....+.. +..++ + ++...+.+..-.+.++|++
T Consensus 156 ~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d~~~~~~~~~~~a~~~-~----------~~~~~~~~~A~~Le~r~gi 224 (396)
T cd01979 156 RSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPPRRYTDLPVIGPGTYV-L----------GIQPFLSRTATTLMRRRKC 224 (396)
T ss_pred CceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCCCChHHhhccCcceEE-E----------EeChhHHHHHHHHHHhcCC
Confidence 34444433333333566688999999996 778865554432 21111 1 2233455667788899999
Q ss_pred cEEEe
Q 006803 597 PVLIC 601 (630)
Q Consensus 597 PV~V~ 601 (630)
|++.+
T Consensus 225 P~~~~ 229 (396)
T cd01979 225 KLLSA 229 (396)
T ss_pred CcccC
Confidence 99875
No 455
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=22.57 E-value=4.1e+02 Score=27.30 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=18.1
Q ss_pred cchHHHHHHHHhCCCcEEEecc
Q 006803 582 VGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 582 iGT~~lAlaAk~~~VPV~V~ae 603 (630)
.=++.++.+|+++|||+.+++-
T Consensus 181 ME~aa~~~vA~~~gv~~~~i~~ 202 (241)
T TIGR01694 181 MTGVPEAVLARELELCYATLAL 202 (241)
T ss_pred ccHHHHHHHHHHCCCCEEEEEE
Confidence 3467799999999999998754
No 456
>PRK09982 universal stress protein UspD; Provisional
Probab=22.51 E-value=1.5e+02 Score=27.33 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=23.8
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
++|++++|.+ .+++---.| ..--+.++-++||+|+
T Consensus 103 ~aDLIVmG~~----~~~~~~~~~--va~~V~~~s~~pVLvv 137 (142)
T PRK09982 103 QCDLLVCGHH----HSFINRLMP--AYRGMINKMSADLLIV 137 (142)
T ss_pred CCCEEEEeCC----hhHHHHHHH--HHHHHHhcCCCCEEEe
Confidence 6899999964 233333334 3446677889999997
No 457
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=22.50 E-value=3.5e+02 Score=23.03 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006803 443 FQKSRIAKLPLTLS-ETEAKAALCNDIDRFINEKIILAD 480 (630)
Q Consensus 443 rlk~~I~~~~~~~s-~~eaKe~L~e~Id~fi~E~i~~A~ 480 (630)
.|...++++++... ..++.+.|.+-+++|++.-+..++
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac 42 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFAC 42 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556554333 577899999999999987554444
No 458
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=22.50 E-value=1.7e+02 Score=28.65 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH
Q 006803 478 LADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL 536 (630)
Q Consensus 478 ~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L 536 (630)
...+.+.+...++-..|..|.-||-+.--..+|..+ ..+.++-.||+|..|..+|+-+
T Consensus 52 ~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~-g~~~~~I~~vvD~np~K~G~~~ 109 (160)
T PF08484_consen 52 QSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYF-GLDNDLIDYVVDDNPLKQGKYL 109 (160)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHH-T--TTTS--EEES-GGGTTEE-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHh-CCCcceeEEEEeCChhhcCccc
Confidence 334445555555667899999999888655555554 3334556778888899999754
No 459
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=22.49 E-value=7.4e+02 Score=24.27 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCCEEEeecChH------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcE--EEEc-chhHHHHhcccc
Q 006803 493 DGDVLLTYGSSC------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSC--TYTH-INAVSYIMHEVT 563 (630)
Q Consensus 493 dgdvILT~g~S~------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~v--TlI~-DsAv~~iM~~Vd 563 (630)
+..+|+..|+-. .+..++....+....++++++-..+.. ..+...+.+.|+.. .+.- ..-+..+|..+|
T Consensus 177 ~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 254 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER--EALEALIKELGLEDRVILLGFTKNIEEYYAKAS 254 (348)
T ss_pred CCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCH--HHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCC
Confidence 345677777533 344555555555667787777654442 22334455566643 3322 256788888999
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+|+.... .| .| ...+=|-.+|+||++-
T Consensus 255 ~~i~ps~~---e~-----~~--~~~~Ea~a~G~Pvi~~ 282 (348)
T cd03820 255 IFVLTSRF---EG-----FP--MVLLEAMAFGLPVISF 282 (348)
T ss_pred EEEeCccc---cc-----cC--HHHHHHHHcCCCEEEe
Confidence 98876432 21 23 3456667789999874
No 460
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=22.41 E-value=2.1e+02 Score=27.71 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCcEEEEcchhHHHH---hccccEEEE-cceeEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 535 ALLRRLLAKGLSCTYTHINAVSYI---MHEVTRVFL-GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 535 ~La~eL~~~GI~vTlI~DsAv~~i---M~~Vd~Viv-GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.+++.|.+.|+.+.++........ ..++|.||+ |-.. + ....+.+...+-+-..++||+=+|=-+
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~-----~-~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPG-----H-PEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCC-----C-cccchhHHHHHHHHhcCCCEEEECHhH
Confidence 456778888999988877654332 346888776 3321 1 111122222222224579999776443
No 461
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.35 E-value=6.1e+02 Score=27.71 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=48.3
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---hHHHHhc--cccEEEE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---AVSYIMH--EVTRVFL 567 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~--~Vd~Viv 567 (630)
.|..|..++....+..++....+.|-....+++.......-.++...+ +-...++.|. .....+. +.|++|
T Consensus 285 ~gkrv~I~~~~~~~~~~~~~l~elG~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pdl~i- 360 (406)
T cd01967 285 KGKKVIIYTGGARSWHVIAALRELGMEVVAAGYEFGHDDDYERIRKIL---DEGTLLVDDYNDLELEELVEKLKPDLIL- 360 (406)
T ss_pred cCCEEEEEccCcchHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHhcC---CCCcEEEeCCCHHHHHHHHHhcCCCEEE-
Confidence 477777776666555555556677866544444433221111111111 2233445342 4444444 355554
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|+......|+..++|++.....
T Consensus 361 ---------------g~~~~~~~a~~~gip~~~~~~~ 382 (406)
T cd01967 361 ---------------SGIKEKYVAQKLGIPFLDLHSE 382 (406)
T ss_pred ---------------eCCcchHHHHhcCCCEEecCCC
Confidence 2223346778889999876543
No 462
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=22.29 E-value=1.2e+03 Score=26.70 Aligned_cols=97 Identities=10% Similarity=0.128 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCceEEEEcCCCCCchHHHHH----HHHHhC--CCcEEEE--cchhHHHHhc---cccEEEEcceeEec
Q 006803 506 VEMILLYAHELGKQFRVVVVDSRPKHEGQALL----RRLLAK--GLSCTYT--HINAVSYIMH---EVTRVFLGASSVLS 574 (630)
Q Consensus 506 V~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La----~eL~~~--GI~vTlI--~DsAv~~iM~---~Vd~VivGAdaI~a 574 (630)
+...+..+..+..+--+||-.|.-.+ -..|| ..|.+. |+.+.+. .+.-+..++. ++|.|++|+-++
T Consensus 239 l~~Y~~~~~~~~~~kv~IvY~S~~Gn-Te~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~-- 315 (479)
T PRK05452 239 VELYLKWAADYQEDRITIFYDTMSNN-TRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTM-- 315 (479)
T ss_pred HHHHHHHhhccCcCcEEEEEECCccH-HHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCcc--
Confidence 33444444432222234455555333 33444 556655 6776654 3455666665 589999999987
Q ss_pred CCceecccchHHHHHHHHh-CCCcEEEeccccc
Q 006803 575 NGTTYSRVGTACVAMVAHA-FRVPVLICCEAYK 606 (630)
Q Consensus 575 NG~V~NKiGT~~lAlaAk~-~~VPV~V~aet~K 606 (630)
||++.-.+-.+.--|.... .|+++.|. .+|-
T Consensus 316 ~~~~~p~~~~fl~~l~~~~l~gK~~~vF-GSyg 347 (479)
T PRK05452 316 NNVMMPKIAGLLEEITGLRFRNKRASAF-GSHG 347 (479)
T ss_pred CCcchHHHHHHHHHhhccCcCCCEEEEE-ECCC
Confidence 6666666555544444443 34554444 5554
No 463
>PRK08068 transaminase; Reviewed
Probab=22.28 E-value=8.5e+02 Score=26.17 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=50.7
Q ss_pred ccCC-CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh-------HHHHh---
Q 006803 491 VRDG-DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA-------VSYIM--- 559 (630)
Q Consensus 491 I~dg-dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-------v~~iM--- 559 (630)
+..+ ++++|.|.+..+..++......| -+|+|. .|.+.+...+ +...|+.+..+.... +..+.
T Consensus 91 ~~~~~~i~it~G~~~~l~~~~~~~~~~g--d~vlv~--~P~y~~~~~~--~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~ 164 (389)
T PRK08068 91 LDPETEVAILFGGKAGLVELPQCLMNPG--DTILVP--DPGYPDYLSG--VALARAQFETMPLIAENNFLPDYTKIPEEV 164 (389)
T ss_pred CCCCccEEEcCCcHHHHHHHHHHhCCCC--CEEEEc--CCCCcchHHH--HHhcCCEEEEeecccccCCCCCHHHHHHhc
Confidence 3444 67888888776655544433333 244444 3766655444 334677776665321 11222
Q ss_pred -ccccEEEEcceeEecCCceecccchH-------HHHHHHHhCCCcEEE
Q 006803 560 -HEVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAHAFRVPVLI 600 (630)
Q Consensus 560 -~~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk~~~VPV~V 600 (630)
.++..|++- |- -|++|+. .|+-+|+.|++.+++
T Consensus 165 ~~~~~~v~l~------~P--~NPTG~~~s~~~~~~l~~la~~~~~~ii~ 205 (389)
T PRK08068 165 AEKAKLMYLN------YP--NNPTGAVATKAFFEETVAFAKKHNIGVVH 205 (389)
T ss_pred cccceEEEEE------CC--CCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 234444432 11 2666663 555577888885553
No 464
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=22.18 E-value=1.2e+03 Score=26.54 Aligned_cols=94 Identities=7% Similarity=0.095 Sum_probs=55.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC-CCchHHHHHHHHHh-CCCcEEEEcchhHHH---Hhc----ccc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR-PKHEGQALLRRLLA-KGLSCTYTHINAVSY---IMH----EVT 563 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR-P~~eG~~La~eL~~-~GI~vTlI~DsAv~~---iM~----~Vd 563 (630)
.|..+..++....+.++..-+.+.|-...++++-+. +.........+|.+ .++++.++.+.-... .+. ++|
T Consensus 311 ~Gkrvai~~~~~~~~~l~~~l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d~~~l~~~i~~~~~~~D 390 (461)
T TIGR02931 311 ADKRVAIYGNPDLVIGLAEFCLDLEMKPVLLLLGDDNSGYVDDPRIKALQENVDYDMEIVTNADFWELESRIKNQGLELD 390 (461)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHCCCEEEEEEECCCCcccchhHHHHHHHhhCCCCceEEeCCCHHHHHHHHHhcCCCCC
Confidence 588999999988887777777788887776655443 33333334455533 333444444433333 333 244
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
++|- +..-..+|+..+||++.+.
T Consensus 391 liig----------------~s~~~~~a~k~gip~~~~g 413 (461)
T TIGR02931 391 LILG----------------HSKGRFISIDYNIPMVRVG 413 (461)
T ss_pred EEEE----------------CcchHHHHHHcCCCEEEec
Confidence 4422 2223467888999999773
No 465
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.10 E-value=1.1e+02 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=16.0
Q ss_pred hccCCCEEEeecChHH---HHHHHHHHHH
Q 006803 490 KVRDGDVLLTYGSSCV---VEMILLYAHE 515 (630)
Q Consensus 490 ~I~dgdvILT~g~S~t---V~~vL~~A~e 515 (630)
.+.++|.++.+++|+. +...++.|++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~ 72 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKE 72 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 5667788888877763 3444444444
No 466
>PRK07877 hypothetical protein; Provisional
Probab=22.08 E-value=6.6e+02 Score=30.58 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCC--ceEEE---EcC-C---CC----CchHH---
Q 006803 471 FINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGK--QFRVV---VVD-S---RP----KHEGQ--- 534 (630)
Q Consensus 471 fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk--~f~Vi---V~E-S---RP----~~eG~--- 534 (630)
|..++.......|+..+.++|. +..|+..|. ++=-.++......|. +++++ ++| | |- ..-|.
T Consensus 85 ~~~~r~~Rn~~~ig~~~Q~~L~-~~~V~IvG~-GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv 162 (722)
T PRK07877 85 FRAVRLDRNRNKITAEEQERLG-RLRIGVVGL-SVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKA 162 (722)
T ss_pred hhHHHhhchhhhCCHHHHHHHh-cCCEEEEEe-cHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHH
Confidence 4334332233346677777776 466777777 322223333444563 34433 111 2 21 11121
Q ss_pred -HHHHHHHhC--CCcEEEEcc----hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 535 -ALLRRLLAK--GLSCTYTHI----NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 535 -~La~eL~~~--GI~vTlI~D----sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
.+++.|.+. .|.++.+.. ..+-.++..+|.||=++|.+- .=+.+--.|..++||++..+.
T Consensus 163 ~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~---------~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 163 VVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLD---------VKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEcC
Confidence 123555554 467766664 346667788999999999542 335677889999999998874
No 467
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=21.99 E-value=4.8e+02 Score=25.90 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=53.7
Q ss_pred HHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEE
Q 006803 487 AATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVF 566 (630)
Q Consensus 487 a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Vi 566 (630)
+.+.+-.|.++++.||..+=.++-..++..| -+|+|+|..|.. .+ +-.-.|+.+.- +..++...|.+|
T Consensus 16 ~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~----al-qA~~dGf~v~~-----~~~a~~~adi~v 83 (162)
T PF00670_consen 16 ATNLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIR----AL-QAAMDGFEVMT-----LEEALRDADIFV 83 (162)
T ss_dssp HH-S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHH----HH-HHHHTT-EEE------HHHHTTT-SEEE
T ss_pred cCceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHH----HH-HhhhcCcEecC-----HHHHHhhCCEEE
Confidence 3456677999999999988778877776544 799999999942 22 22236887653 334567889887
Q ss_pred E--cceeE--------ecCCceecccchH
Q 006803 567 L--GASSV--------LSNGTTYSRVGTA 585 (630)
Q Consensus 567 v--GAdaI--------~aNG~V~NKiGT~ 585 (630)
. |.-.| +.||.++.-+|.+
T Consensus 84 taTG~~~vi~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 84 TATGNKDVITGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp E-SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred ECCCCccccCHHHHHHhcCCeEEeccCcC
Confidence 5 54343 4688888888876
No 468
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=21.93 E-value=7.6e+02 Score=25.36 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHH---cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc
Q 006803 503 SCVVEMILLYAHE---LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH 560 (630)
Q Consensus 503 S~tV~~vL~~A~e---~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~ 560 (630)
+.....++.+|++ ...++-|=|.=|. +|...++.|.+.||+|..+..-++...+-
T Consensus 60 ~~~~~~mi~~a~~l~~~~~~i~iKIP~T~---~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~ 117 (213)
T TIGR00875 60 SLDAEGMVEEAKELAKLAPNIVVKIPMTS---EGLKAVKILKKEGIKTNVTLVFSAAQALL 117 (213)
T ss_pred eCCHHHHHHHHHHHHHhCCCeEEEeCCCH---HHHHHHHHHHHCCCceeEEEecCHHHHHH
Confidence 4456777777765 2344333343333 89888999999999998887755554443
No 469
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=21.92 E-value=8e+02 Score=24.46 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=62.8
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCC---------Cc-----hHH----HHHHHHHhCC
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRP---------KH-----EGQ----ALLRRLLAKG 544 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP---------~~-----eG~----~La~eL~~~G 544 (630)
++..+.++|. +..||..|..++-..+++.....|-. ++.++|... .+ -|+ .++..|.+..
T Consensus 11 ~G~e~Q~~L~-~s~VlIiG~gglG~evak~La~~GVg-~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN 88 (197)
T cd01492 11 WGLEAQKRLR-SARILLIGLKGLGAEIAKNLVLSGIG-SLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN 88 (197)
T ss_pred hCHHHHHHHH-hCcEEEEcCCHHHHHHHHHHHHcCCC-EEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC
Confidence 4555556665 46788889988777888887777864 233333221 11 021 2235566655
Q ss_pred C--cEEEEcc---hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 545 L--SCTYTHI---NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 545 I--~vTlI~D---sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
= .++.+.. .-.-.++.++|.||...|.+ ---..+.-.|+.+++||+.+.
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~---------~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 89 PRVKVSVDTDDISEKPEEFFSQFDVVVATELSR---------AELVKINELCRKLGVKFYATG 142 (197)
T ss_pred CCCEEEEEecCccccHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEE
Confidence 3 3333221 11334567888888765432 123456678899999997653
No 470
>PRK11263 cardiolipin synthase 2; Provisional
Probab=21.89 E-value=2.1e+02 Score=32.08 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCceEEEEcCC-CCCchHHHHHHHHHhCCCcEEEEcc
Q 006803 504 CVVEMILLYAHELGKQFRVVVVDS-RPKHEGQALLRRLLAKGLSCTYTHI 552 (630)
Q Consensus 504 ~tV~~vL~~A~e~gk~f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~D 552 (630)
..+...|..|.++|.+++|++..- .+ .....+..+|.+.||.+.+...
T Consensus 48 ~~l~~aL~~aa~rGV~Vril~D~~gs~-~~~~~~~~~L~~aGv~v~~~~p 96 (411)
T PRK11263 48 KQLHAALLAAAQRGVKVEVLVDGYGSP-DLSDEFVNELTAAGVRFRYFDP 96 (411)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCC-CCCHHHHHHHHHCCeEEEEeCC
Confidence 467788888888998888887642 22 2356678899999999976643
No 471
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=21.87 E-value=4.9e+02 Score=32.81 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=61.4
Q ss_pred cCCCEEEeecChH--HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc------hhHHHHhc-cc
Q 006803 492 RDGDVLLTYGSSC--VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI------NAVSYIMH-EV 562 (630)
Q Consensus 492 ~dgdvILT~g~S~--tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D------sAv~~iM~-~V 562 (630)
..|.++++.+... -+..+.+..++ ..|++|.++. .++.|.+.||+|+.+.- +.+..+.. ++
T Consensus 936 ~~~~~~~~~~~~~k~~~~~~~~~l~~--~g~~~~at~g--------ta~~l~~~gi~~~~~~~~~~~~~~~~~~i~~~~i 1005 (1050)
T TIGR01369 936 KKGSVLLSVRDKDKEELLDLARKLAE--KGYKLYATEG--------TAKFLGEAGIKPELVLKVSEGRPNILDLIKNGEI 1005 (1050)
T ss_pred CCCeEEEEeccCchHHHHHHHHHHHH--CCCEEEEech--------HHHHHHHCCCceEEEeecCCCCccHHHHHHcCCe
Confidence 4456666665443 23444444444 4588887765 57888899999987742 33444433 68
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|+||-=. .+|.- .....|.+=-+|-.|+||++-...+
T Consensus 1006 ~lvin~~----~~~~~-~~~~g~~iRr~Ai~~~ip~~t~~~~ 1042 (1050)
T TIGR01369 1006 ELVINTT----SKGAG-TATDGYKIRREALDYGVPLITTLNT 1042 (1050)
T ss_pred EEEEECC----CCCcc-cccccHHHHHHHHHcCCCEEecHHH
Confidence 9887532 11221 2344688888999999999865444
No 472
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.85 E-value=1.5e+02 Score=26.30 Aligned_cols=39 Identities=21% Similarity=0.089 Sum_probs=29.9
Q ss_pred chHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 531 HEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 531 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
.+-..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 344455677888899999999888888888888887644
No 473
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=21.84 E-value=5.5e+02 Score=26.78 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=25.3
Q ss_pred hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 553 NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 553 sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.-+..+|..+|.+|.-+ | | +..-|-..++|++++...
T Consensus 269 ~~~~~l~~~ad~~v~~S------g------g---i~~Ea~~~g~PvI~~~~~ 305 (363)
T cd03786 269 LYFLLLLKNADLVLTDS------G------G---IQEEASFLGVPVLNLRDR 305 (363)
T ss_pred HHHHHHHHcCcEEEEcC------c------c---HHhhhhhcCCCEEeeCCC
Confidence 45677788899887543 2 2 345666789999998643
No 474
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=21.76 E-value=5.2e+02 Score=25.95 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=51.5
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|..||..|...+....++...+.|..+ +|++ |... ..+ ..|...| .++++...--...+..+|+||...+.=
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V--~VIs--~~~~-~~l-~~l~~~~-~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHI--VVIS--PELT-ENL-VKLVEEG-KIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeE--EEEc--CCCC-HHH-HHHHhCC-CEEEEecCCChhhcCCceEEEEcCCCH
Confidence 4778999999998888888877777544 4443 3221 112 3344433 245544332233456677776654322
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
- +| ..++..|+. +++|.|+
T Consensus 82 e-----lN----~~i~~~a~~-~~lvn~~ 100 (202)
T PRK06718 82 R-----VN----EQVKEDLPE-NALFNVI 100 (202)
T ss_pred H-----HH----HHHHHHHHh-CCcEEEC
Confidence 2 22 345566644 6877665
No 475
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=21.76 E-value=9.6e+02 Score=25.32 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=60.8
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcC-CCCCchHHHHHHHHHh-CCCcEEEEcchhHHHHhc---cccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVD-SRPKHEGQALLRRLLA-KGLSCTYTHINAVSYIMH---EVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~E-SRP~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~---~Vd~VivGA 569 (630)
.+|+.-++-+..+-.-......+..+.+++-. ..|.. .++..++.+ .|+.+. ....++-.+++ +=..|.+=+
T Consensus 123 gvi~~t~H~gnwE~~~~~~~~~~~~~~~v~r~~~n~~~--d~~~~~~R~~~g~~~i-~~~~~~r~i~~aLk~g~~v~il~ 199 (305)
T TIGR02208 123 PVIFLVPHGWAIDYAGLRLASQGLPMVTMFNNHKNPLF--DWLWNRVRSRFGGHVY-AREAGIKALLASLKRGESGYYLP 199 (305)
T ss_pred CEEEEecchhHHHHHHHHHHhcCCCceEEeeCCCCHHH--HHHHHHHHhcCCCcee-cChhhHHHHHHHHhCCCeEEEeC
Confidence 57777777665542222223345566554332 22333 344555533 565542 24456666655 556777788
Q ss_pred eeEe--cCCceecccch-----HHHHHHHHhCCCcEEEec
Q 006803 570 SSVL--SNGTTYSRVGT-----ACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 570 daI~--aNG~V~NKiGT-----~~lAlaAk~~~VPV~V~a 602 (630)
|.-. .+|-.+.-.|. -..|++|+.+|.||+.+.
T Consensus 200 Dq~~~~~~gv~v~FfG~~a~t~~~~a~LA~~~~apvv~~~ 239 (305)
T TIGR02208 200 DEDHGPEQSVFVPFFATYKATLPVVGRLAKAGNAQVVPVF 239 (305)
T ss_pred CCCCCCCCCeEeccCCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 8765 45666665553 346789999999999653
No 476
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=21.71 E-value=6.5e+02 Score=25.07 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=55.9
Q ss_pred CCCEEEeecChH------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCc--EEE---EcchhHHHHhcc
Q 006803 493 DGDVLLTYGSSC------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS--CTY---THINAVSYIMHE 561 (630)
Q Consensus 493 dgdvILT~g~S~------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~--vTl---I~DsAv~~iM~~ 561 (630)
+.-+|+..|+-. .+..++....+++..++++++-..+......+.....+.|++ +++ +.+..+..+|..
T Consensus 202 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 281 (375)
T cd03821 202 DKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALAD 281 (375)
T ss_pred CCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhh
Confidence 345677777543 344455554455567887777654443333332222455553 333 234567778888
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+|.+++-... . | .|. ..+=|-.+|+|+++-
T Consensus 282 adv~v~ps~~--e-~-----~~~--~~~Eama~G~PvI~~ 311 (375)
T cd03821 282 ADLFVLPSHS--E-N-----FGI--VVAEALACGTPVVTT 311 (375)
T ss_pred CCEEEecccc--C-C-----CCc--HHHHHHhcCCCEEEc
Confidence 9998875433 1 1 222 345577789999874
No 477
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=21.66 E-value=1e+03 Score=25.67 Aligned_cols=101 Identities=11% Similarity=0.160 Sum_probs=50.2
Q ss_pred CCEEEeecChHHHHHHHHHH--HHcCCceEEEEcCCCCCchHHHHH-HHH-HhCCCcEEEEcc--------hhHHHHhc-
Q 006803 494 GDVLLTYGSSCVVEMILLYA--HELGKQFRVVVVDSRPKHEGQALL-RRL-LAKGLSCTYTHI--------NAVSYIMH- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A--~e~gk~f~ViV~ESRP~~eG~~La-~eL-~~~GI~vTlI~D--------sAv~~iM~- 560 (630)
.++|+|.|.+..+..++... ....+.-+|++.+. .+.+.... ..+ ...|+.+.++.. ..+...+.
T Consensus 86 ~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~--~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 163 (406)
T PRK09295 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEM--EHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE 163 (406)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcc--hhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC
Confidence 46788876655544444321 01122336776653 22222222 223 456888888752 22333332
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+..+|++. +.=...|.+.. ...|+-+|+.+++.|+|
T Consensus 164 ~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~viv 199 (406)
T PRK09295 164 RTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKVLV 199 (406)
T ss_pred CcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEEEE
Confidence 34444443 22234444433 23577788889987765
No 478
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=21.64 E-value=1.1e+03 Score=25.72 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=29.5
Q ss_pred HHHhCCCcEEEEcchh---HHHHhcc----ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 539 RLLAKGLSCTYTHINA---VSYIMHE----VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 539 eL~~~GI~vTlI~DsA---v~~iM~~----Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
.+...|.++.++..+- +...+.. -.++|+-..---..|.++. --.+.-+|+.|++.++| =|.|-
T Consensus 148 ~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~liv-Dea~~ 218 (410)
T PRK13392 148 GIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP---IEAICDLADRYNALTYV-DEVHA 218 (410)
T ss_pred HHHHcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEE-ECCcc
Confidence 3445688877765332 2223321 1223322221122233333 23466678888875543 34443
No 479
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=21.47 E-value=9.1e+02 Score=24.95 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=47.3
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc---cccE
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH---EVTR 564 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~---~Vd~ 564 (630)
+++|-|.|..+..++......+ =+|++++. +.+ |..+.......|+++..|.. ..+-..+. ++..
T Consensus 53 i~~~~~gt~~l~~~~~~~~~~~--~~vi~~~~-~~~-~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~ 128 (355)
T TIGR03301 53 VLLQGSGTFAVEATIGSLVPRD--GKLLVLIN-GAY-GERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITH 128 (355)
T ss_pred EEEeCCcHHHHHHHHHhccCCC--CeEEEECC-Cch-hhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceE
Confidence 3345555555556665544332 24454432 232 33343444557888887752 12333332 1222
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
|++ .+.=..+|.+.. --.|+-+|+.|+++++|=
T Consensus 129 v~~-~~~~~~~G~~~~---~~~i~~l~~~~~~~livD 161 (355)
T TIGR03301 129 VAT-VHHETTTGILNP---LEAIAKVARSHGAVLIVD 161 (355)
T ss_pred EEE-EecCCcccchhH---HHHHHHHHHHcCCEEEEE
Confidence 321 111112343332 245777888999887763
No 480
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=21.43 E-value=3.6e+02 Score=25.10 Aligned_cols=7 Identities=14% Similarity=-0.107 Sum_probs=3.4
Q ss_pred cEEEEcc
Q 006803 546 SCTYTHI 552 (630)
Q Consensus 546 ~vTlI~D 552 (630)
++.+++|
T Consensus 82 d~i~~~D 88 (181)
T cd04187 82 DAVITMD 88 (181)
T ss_pred CEEEEEe
Confidence 5555443
No 481
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=21.43 E-value=1.2e+02 Score=31.73 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=37.6
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI 552 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D 552 (630)
+..|++|.+.+...+...+=..|...|.+++|++.++-|.. ....+...|-.++++..
T Consensus 54 ~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~----k~~~~~~~GA~v~~~~~ 111 (298)
T TIGR01139 54 LKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIE----RRKLLKAYGAELVLTPG 111 (298)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHH----HHHHHHHcCCEEEEECC
Confidence 34566777766666666666666667888888888776522 24556667777776654
No 482
>PRK13435 response regulator; Provisional
Probab=21.39 E-value=5.9e+02 Score=22.70 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=43.6
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhC
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF 594 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~ 594 (630)
.++|++++..+.... .+...|...|+.+.....+ +..++.. ..|.||+..+. .+| ..|--.+..+.+..
T Consensus 5 ~~~iliid~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~--~~~----~~~~~~~~~l~~~~ 77 (145)
T PRK13435 5 QLKVLIVEDEALIAL-ELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHL--ADG----PTGVEVARRLSADG 77 (145)
T ss_pred cceEEEEcCcHHHHH-HHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeec--CCC----CcHHHHHHHHHhCC
Confidence 567777777655432 3556666777776533322 2222222 47888875422 111 12333344444556
Q ss_pred CCcEEEecccc
Q 006803 595 RVPVLICCEAY 605 (630)
Q Consensus 595 ~VPV~V~aet~ 605 (630)
.+|+++++...
T Consensus 78 ~~pii~ls~~~ 88 (145)
T PRK13435 78 GVEVVFMTGNP 88 (145)
T ss_pred CCCEEEEeCCH
Confidence 89999987653
No 483
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=21.36 E-value=3.5e+02 Score=29.83 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCCEEEeecChH---HHHHHHHHHHHcCC-ceEEEEcCCCCCchHHHHHHHHHhCC-CcEEEEcchhHHHHhccccEEEE
Q 006803 493 DGDVLLTYGSSC---VVEMILLYAHELGK-QFRVVVVDSRPKHEGQALLRRLLAKG-LSCTYTHINAVSYIMHEVTRVFL 567 (630)
Q Consensus 493 dgdvILT~g~S~---tV~~vL~~A~e~gk-~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTlI~DsAv~~iM~~Vd~Viv 567 (630)
+-.+||+.|-|. .+..++..+..... .+.|+..-..-.++ ++-..+.+.| +.+....|+ +..+|..+|+||
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~--~~~~~~~~~~~~~v~~f~~d-m~~~~~~ADLvI- 257 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLE--ELKSAYNELGVVRVLPFIDD-MAALLAAADLVI- 257 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHH--HHHHHHhhcCcEEEeeHHhh-HHHHHHhccEEE-
Confidence 567999999887 34455555554333 46666554443322 2335555666 556666677 455567788874
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
.|.|...++=++ ..++|.+.+=.-+.
T Consensus 258 ------------sRaGa~Ti~E~~-a~g~P~IliP~p~~ 283 (357)
T COG0707 258 ------------SRAGALTIAELL-ALGVPAILVPYPPG 283 (357)
T ss_pred ------------eCCcccHHHHHH-HhCCCEEEeCCCCC
Confidence 577777777554 47999998754443
No 484
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=21.29 E-value=88 Score=34.66 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=29.7
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEcCCCCCc-hHHHH--HHHHHhCCCcEEEEcc
Q 006803 501 GSSCVVEMILLYAHELGKQFRVVVVDSRPKH-EGQAL--LRRLLAKGLSCTYTHI 552 (630)
Q Consensus 501 g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~-eG~~L--a~eL~~~GI~vTlI~D 552 (630)
++|. +...|..|.++||+.+|+| |-+=+| |-..+ +++|.++|+.|.|-..
T Consensus 48 ~~S~-iv~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~~ 100 (352)
T PF13090_consen 48 SNSP-IVNALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGVP 100 (352)
T ss_dssp TT-H-HHHHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--T
T ss_pred CCCH-HHHHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCCC
Confidence 3444 4556666778899888765 544444 23333 5899999999988543
No 485
>PRK07505 hypothetical protein; Provisional
Probab=21.29 E-value=1e+03 Score=25.78 Aligned_cols=101 Identities=18% Similarity=0.081 Sum_probs=49.5
Q ss_pred CEEEeecChHHHHHHHHHHHH---cCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEc--c-hhHHHHhccccEEEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHE---LGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTH--I-NAVSYIMHEVTRVFL 567 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e---~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~Viv 567 (630)
+.+++.+.+..++.+|..+.. .+.+-.|++.+. .+.|... ...+...+..+..+. | ..+..++..-+..++
T Consensus 107 ~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~--~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~~~~~~v 184 (402)
T PRK07505 107 SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDK--NAHASLNILKGICADETEVETIDHNDLDALEDICKTNKTVAY 184 (402)
T ss_pred CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEch--hhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhcCCCEEE
Confidence 556555555556656654332 112223555542 2223211 122233355555553 2 233344432223344
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
=++-+...|.++. --.+.-+|++|++.+++
T Consensus 185 l~~p~~~~G~~~~---~~~i~~l~~~~~~~li~ 214 (402)
T PRK07505 185 VADGVYSMGGIAP---VKELLRLQEKYGLFLYI 214 (402)
T ss_pred EEecccccCCcCC---HHHHHHHHHHcCCEEEE
Confidence 4466777777766 35667788889876554
No 486
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=21.27 E-value=58 Score=27.83 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=25.0
Q ss_pred HhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 558 IMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 558 iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
.+.++--| |+..|+.. .-.|++|++++||.+|-|.
T Consensus 27 ~~~~~~Gi------v~~~Gg~~-----SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 27 DLQRVAGI------VTEEGGPT-----SHAAILARELGIPAIVGVG 61 (80)
T ss_dssp HHTTSSEE------EESSSSTT-----SHHHHHHHHTT-EEEESTT
T ss_pred chhheEEE------EEEcCCcc-----chHHHHHHHcCCCEEEeec
Confidence 45566666 44566553 4589999999999999986
No 487
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=21.16 E-value=1.7e+02 Score=28.32 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=19.7
Q ss_pred chHHHHHHHHhCCCcEEEecccc
Q 006803 583 GTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 583 GT~~lAlaAk~~~VPV~V~aet~ 605 (630)
..+....+++..++|+++.+.+.
T Consensus 87 ~~~~~~~~~~~~~~pv~~~g~g~ 109 (286)
T PF04230_consen 87 IFLRWLFLAKKLGKPVIILGQGI 109 (286)
T ss_pred HHHHHHHHHHhcCCCeEEECceE
Confidence 44788899999999999988777
No 488
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=21.16 E-value=6.4e+02 Score=25.05 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=27.4
Q ss_pred cccEEEEcceeEecCCc-eecccc-----hHHHHHHHHhCCCcEEEeccccc
Q 006803 561 EVTRVFLGASSVLSNGT-TYSRVG-----TACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~-V~NKiG-----T~~lAlaAk~~~VPV~V~aet~K 606 (630)
.++.|||=-=..+..+. -.++.. ...+.-+|+++|+++++++...+
T Consensus 123 ~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r 174 (242)
T cd00984 123 GLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLSR 174 (242)
T ss_pred CCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccCh
Confidence 57777773222222332 122221 23466789999999999997654
No 489
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.13 E-value=3.3e+02 Score=29.80 Aligned_cols=73 Identities=21% Similarity=0.192 Sum_probs=46.7
Q ss_pred CCEEEeecChH---HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-hhHHHHhccccEEEEcc
Q 006803 494 GDVLLTYGSSC---VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-NAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 494 gdvILT~g~S~---tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sAv~~iM~~Vd~VivGA 569 (630)
.++..|.|-|. +...++..+.....+++|++--+.|.+.-.+ .+.+.-=+..++-| +-++-+|+++|+.|..|
T Consensus 159 r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~---k~~~~~~~i~~~~~~~dma~LMke~d~aI~Aa 235 (318)
T COG3980 159 RDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLR---KRAEKYPNINLYIDTNDMAELMKEADLAISAA 235 (318)
T ss_pred heEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHH---HHHhhCCCeeeEecchhHHHHHHhcchheecc
Confidence 46788888776 5567777776656688998887777764322 12222222333333 34788999999987654
No 490
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.06 E-value=4.8e+02 Score=21.56 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=32.0
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEEEcCCCCC----ch-HHHHHHHHHhCCCcEEE
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPK----HE-GQALLRRLLAKGLSCTY 549 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~----~e-G~~La~eL~~~GI~vTl 549 (630)
|+.+|.+-+-..+-..+.+.|+..+++.-..++. .+ ...+...|.+.||.+.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 6677777766666666667776555554444444 11 23344778888876543
No 491
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.94 E-value=9.9e+02 Score=25.15 Aligned_cols=101 Identities=23% Similarity=0.231 Sum_probs=61.9
Q ss_pred CEEEeecCh---HHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE-Ecchh----HHHHhcc-ccEE
Q 006803 495 DVLLTYGSS---CVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY-THINA----VSYIMHE-VTRV 565 (630)
Q Consensus 495 dvILT~g~S---~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl-I~DsA----v~~iM~~-Vd~V 565 (630)
-++|||.|- .-++.++..+.+.|-. =|+|.|= |..|...+...+.+.|+.... ++-+. +..+... -++|
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvd-GviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVD-GLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCc-EEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 478998864 3568899999887743 3566654 556888888999999998766 55444 2222222 2333
Q ss_pred EEcceeEecCCc-----eecccchHHHHHHHHhCCCcEEEe
Q 006803 566 FLGASSVLSNGT-----TYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 566 ivGAdaI~aNG~-----V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
-+ |..+|. -...-....+..+.++.++|++|=
T Consensus 170 Y~----vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vG 206 (258)
T PRK13111 170 YY----VSRAGVTGARSADAADLAELVARLKAHTDLPVAVG 206 (258)
T ss_pred EE----EeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEE
Confidence 22 111221 112223346667777779999984
No 492
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=20.93 E-value=90 Score=30.74 Aligned_cols=55 Identities=25% Similarity=0.215 Sum_probs=33.0
Q ss_pred EEEeecC--hHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCc-EEEEcchhH
Q 006803 496 VLLTYGS--SCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS-CTYTHINAV 555 (630)
Q Consensus 496 vILT~g~--S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~-vTlI~DsAv 555 (630)
|+|+-.. +......|..++++ .+.|+++=+||...-..++..| |++ +-+|+.|.+
T Consensus 9 TLL~~~~~~~~~~~~~l~~l~~~--gi~~~i~TgR~~~~~~~~~~~l---~~~~~~~I~~NGa 66 (221)
T TIGR02463 9 TLLDSHSYDWQPAAPWLTRLQEA--GIPVILCTSKTAAEVEYLQKAL---GLTGDPYIAENGA 66 (221)
T ss_pred CCcCCCCCCcHHHHHHHHHHHHC--CCeEEEEcCCCHHHHHHHHHHc---CCCCCcEEEeCCc
Confidence 4555322 23345777777654 4788888899887655554444 444 456666554
No 493
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=20.92 E-value=3.3e+02 Score=23.99 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=43.4
Q ss_pred HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHH
Q 006803 509 ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVA 588 (630)
Q Consensus 509 vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lA 588 (630)
++....++..+++++++-..|. ++ +++...+|.+.=..+ -+..+|..+|.+++-.+ .+. |+....
T Consensus 24 ~~~~l~~~~p~~~l~i~G~~~~----~l-~~~~~~~v~~~g~~~-e~~~~l~~~dv~l~p~~----~~~-----~~~~k~ 88 (135)
T PF13692_consen 24 ALERLKEKHPDIELIIIGNGPD----EL-KRLRRPNVRFHGFVE-ELPEILAAADVGLIPSR----FNE-----GFPNKL 88 (135)
T ss_dssp HHHHHHHHSTTEEEEEECESS-----HH-CCHHHCTEEEE-S-H-HHHHHHHC-SEEEE-BS----S-S-----CC-HHH
T ss_pred HHHHHHHHCcCEEEEEEeCCHH----HH-HHhcCCCEEEcCCHH-HHHHHHHhCCEEEEEee----CCC-----cCcHHH
Confidence 5555666677788887766555 23 222344554433333 57777889999986432 222 444555
Q ss_pred HHHHhCCCcEEEecc
Q 006803 589 MVAHAFRVPVLICCE 603 (630)
Q Consensus 589 laAk~~~VPV~V~ae 603 (630)
+=+-.+|+|+++.-.
T Consensus 89 ~e~~~~G~pvi~~~~ 103 (135)
T PF13692_consen 89 LEAMAAGKPVIASDN 103 (135)
T ss_dssp HHHHCTT--EEEEHH
T ss_pred HHHHHhCCCEEECCc
Confidence 666669999998543
No 494
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=20.88 E-value=3.8e+02 Score=25.88 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=46.7
Q ss_pred CCCEEEeec--ChHHHHHHHHHHHHcCCceEEEEcCC--CCCc-hHHHHH-HHHHhCCCcEEEEcchhHHHHhccccEEE
Q 006803 493 DGDVLLTYG--SSCVVEMILLYAHELGKQFRVVVVDS--RPKH-EGQALL-RRLLAKGLSCTYTHINAVSYIMHEVTRVF 566 (630)
Q Consensus 493 dgdvILT~g--~S~tV~~vL~~A~e~gk~f~ViV~ES--RP~~-eG~~La-~eL~~~GI~vTlI~DsAv~~iM~~Vd~Vi 566 (630)
+|.+|.-.| ++.++..++..+..-|..|.++..+. -|.. +-...+ ....+.|..+++. ..+-..++.+|.|+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--~~~~e~l~~aDvvy 78 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT--DDIEEALKGADVVY 78 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE--SSHHHHHTT-SEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE--eCHHHhcCCCCEEE
Confidence 356677777 57899999988888888877776666 2331 122223 3444558778877 44556667777765
Q ss_pred E
Q 006803 567 L 567 (630)
Q Consensus 567 v 567 (630)
.
T Consensus 79 ~ 79 (158)
T PF00185_consen 79 T 79 (158)
T ss_dssp E
T ss_pred E
Confidence 4
No 495
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=20.82 E-value=6e+02 Score=27.90 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=34.8
Q ss_pred eecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006803 499 TYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 499 T~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 551 (630)
.||+|..+...|+...+.-..+-|++=+.- ....++.|.+.|++...+.
T Consensus 117 ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~----t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 117 AHGHSNSVINMIKHIKTHLPDSFVIAGNVG----TPEAVRELENAGADATKVG 165 (321)
T ss_pred ccCchHHHHHHHHHHHHhCCCCEEEEecCC----CHHHHHHHHHcCcCEEEEC
Confidence 389999999999988765444555554432 4567788889998776655
No 496
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.79 E-value=3.5e+02 Score=31.72 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH
Q 006803 502 SSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ 534 (630)
Q Consensus 502 ~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~ 534 (630)
.|..+-.+-....+ .+|+|+++-+-+...|+
T Consensus 391 KSTNLAKIayWLlq--NkfrVLIAACDTFRsGA 421 (587)
T KOG0781|consen 391 KSTNLAKIAYWLLQ--NKFRVLIAACDTFRSGA 421 (587)
T ss_pred ccchHHHHHHHHHh--CCceEEEEeccchhhhH
Confidence 44444444444433 45777777777776664
No 497
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=20.78 E-value=3e+02 Score=25.38 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCCch
Q 006803 507 EMILLYAHELGKQFRVVVVDSRPKHE 532 (630)
Q Consensus 507 ~~vL~~A~e~gk~f~ViV~ESRP~~e 532 (630)
..++.....+...++++..+.+....
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~n~G~~ 68 (185)
T cd04179 43 AEIARELAARVPRVRVIRLSRNFGKG 68 (185)
T ss_pred HHHHHHHHHhCCCeEEEEccCCCCcc
Confidence 44444443333444555555554433
No 498
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=20.78 E-value=5.9e+02 Score=28.33 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.1
Q ss_pred ecccchHHHHHHHHhCCCcEEEecccc
Q 006803 579 YSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 579 ~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.|-+||..+--++++||++-+|-..+.
T Consensus 103 nNi~gtlnlLe~~~~~~~~~~V~sssa 129 (343)
T KOG1371|consen 103 NNIAGTLNLLEVMKAHNVKALVFSSSA 129 (343)
T ss_pred hhhhhHHHHHHHHHHcCCceEEEecce
Confidence 378999999999999999999876554
No 499
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=20.75 E-value=3.9e+02 Score=27.79 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=27.1
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCC
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPK 530 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~ 530 (630)
+..|++||.+|.+.+-..++..|+..|.+ +|+++++.+.
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~-~vi~~~~~~~ 199 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAE-DVIGVDPSPE 199 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHH
Confidence 56799999999765555666666666643 4888876543
No 500
>PRK12452 cardiolipin synthetase; Reviewed
Probab=20.71 E-value=5.4e+02 Score=29.69 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEe--ecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-----HHHHhCCC
Q 006803 473 NEKIILADKVIVRHAATKVRDGDVLLT--YGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-----RRLLAKGL 545 (630)
Q Consensus 473 ~E~i~~A~~~Ia~~a~~~I~dgdvILT--~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-----~eL~~~GI 545 (630)
.+.+..+.-.....|.+.|. |.| +.....+...|+.|..+|.+.++++.+ ++...+...+ .+|.+.||
T Consensus 342 ~~~i~~~~l~~I~~A~~~I~----I~tpYf~pd~~l~~aL~~Aa~rGV~Vrii~p~-~~D~~~~~~a~~~~~~~L~~aGv 416 (509)
T PRK12452 342 DKSIRNTLLAVMGSAKKSIW----IATPYFIPDQETLTLLRLSAISGIDVRILYPG-KSDSIISDQASQSYFTPLLKAGA 416 (509)
T ss_pred hHHHHHHHHHHHHHhhhEEE----EECCccCCCHHHHHHHHHHHHcCCEEEEEcCC-CCChHHHHHHHHHHHHHHHHcCC
Q ss_pred cEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHH
Q 006803 546 SCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACV 587 (630)
Q Consensus 546 ~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~l 587 (630)
.+...... ++=+-.+.-||. ..-+||+.+
T Consensus 417 ~I~~y~~~------------~lHaK~~ivD~~-~a~vGS~Nl 445 (509)
T PRK12452 417 SIYSYKDG------------FMHAKIVLVDDK-IATIGTANM 445 (509)
T ss_pred EEEEecCC------------CeeeeEEEECCC-EEEEeCccc
Done!