Query 006803
Match_columns 630
No_of_seqs 287 out of 1432
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a0u_A Initiation factor 2B; S 100.0 9.9E-62 3.4E-66 517.6 28.7 273 337-628 26-323 (383)
2 2yvk_A Methylthioribose-1-phos 100.0 3.1E-61 1.1E-65 512.4 26.1 266 337-628 37-319 (374)
3 1t9k_A Probable methylthioribo 100.0 1E-60 3.5E-65 504.4 25.5 263 337-628 15-294 (347)
4 1t5o_A EIF2BD, translation ini 100.0 4.9E-60 1.7E-64 499.9 26.8 262 339-628 12-290 (351)
5 3a11_A Translation initiation 100.0 4E-59 1.4E-63 490.9 28.7 258 348-628 14-276 (338)
6 1vb5_A Translation initiation 100.0 1.6E-53 5.4E-58 437.1 25.3 240 367-626 2-241 (276)
7 3ecs_A Translation initiation 100.0 6.2E-52 2.1E-56 432.4 22.3 235 388-628 21-257 (315)
8 1w2w_B 5-methylthioribose-1-ph 100.0 2.3E-36 8E-41 295.5 8.3 112 517-628 2-118 (191)
9 1w2w_A 5-methylthioribose-1-ph 99.9 5.6E-25 1.9E-29 218.0 14.8 168 336-521 15-209 (211)
10 1uj6_A Ribose 5-phosphate isom 98.2 7.2E-06 2.5E-10 82.1 10.6 128 479-623 8-142 (227)
11 1m0s_A Ribose-5-phosphate isom 97.8 4.8E-05 1.6E-09 75.8 9.3 129 479-621 6-136 (219)
12 1lk5_A D-ribose-5-phosphate is 97.8 0.00012 4E-09 73.5 11.4 128 479-621 6-140 (229)
13 2f8m_A Ribose 5-phosphate isom 97.8 7.6E-05 2.6E-09 75.6 10.0 131 478-622 11-149 (244)
14 3kwm_A Ribose-5-phosphate isom 97.6 0.00014 4.7E-09 72.9 9.4 130 478-621 11-141 (224)
15 3hhe_A Ribose-5-phosphate isom 97.4 0.00064 2.2E-08 69.3 10.0 128 479-621 27-158 (255)
16 3l7o_A Ribose-5-phosphate isom 97.4 0.00049 1.7E-08 68.9 9.0 127 479-621 4-136 (225)
17 1o8b_A Ribose 5-phosphate isom 97.4 4.3E-05 1.5E-09 76.1 1.3 128 479-621 6-135 (219)
18 1xtz_A Ribose-5-phosphate isom 97.4 0.00042 1.4E-08 70.9 8.7 130 479-622 21-166 (264)
19 2pjm_A Ribose-5-phosphate isom 97.2 0.002 6.8E-08 64.5 11.9 128 479-621 6-139 (226)
20 3uw1_A Ribose-5-phosphate isom 96.7 0.0044 1.5E-07 62.6 8.6 124 480-621 15-147 (239)
21 4gmk_A Ribose-5-phosphate isom 93.0 0.3 1E-05 49.0 8.9 125 479-621 7-139 (228)
22 3ixq_A Ribose-5-phosphate isom 88.8 1.6 5.6E-05 43.6 9.5 125 480-621 7-139 (226)
23 3ic5_A Putative saccharopine d 83.1 8.1 0.00028 32.0 9.7 99 494-608 5-106 (118)
24 3i6i_A Putative leucoanthocyan 82.6 3.8 0.00013 41.2 8.8 102 494-602 10-118 (346)
25 3e8x_A Putative NAD-dependent 82.0 3.2 0.00011 39.3 7.5 106 493-605 20-132 (236)
26 3hgm_A Universal stress protei 79.7 14 0.00048 31.7 10.3 60 538-601 77-147 (147)
27 3g0t_A Putative aminotransfera 78.8 18 0.00061 37.0 12.4 104 492-600 104-220 (437)
28 1jw9_B Molybdopterin biosynthe 78.6 6.1 0.00021 39.1 8.5 109 483-602 21-153 (249)
29 3s3t_A Nucleotide-binding prot 77.8 18 0.00062 31.1 10.4 60 538-601 76-145 (146)
30 1jeo_A MJ1247, hypothetical pr 74.1 22 0.00074 32.4 10.4 37 532-569 97-133 (180)
31 4dq6_A Putative pyridoxal phos 73.8 20 0.00068 35.8 10.9 101 493-600 90-202 (391)
32 3ruf_A WBGU; rossmann fold, UD 73.3 19 0.00065 35.8 10.6 109 493-605 24-152 (351)
33 2z08_A Universal stress protei 73.1 39 0.0013 28.8 11.3 37 561-601 99-136 (137)
34 4gx0_A TRKA domain protein; me 72.6 5.5 0.00019 43.5 6.9 106 486-602 315-440 (565)
35 3fdx_A Putative filament prote 72.3 32 0.0011 29.3 10.6 36 561-601 106-142 (143)
36 3dlo_A Universal stress protei 72.3 52 0.0018 29.2 12.4 104 495-601 26-154 (155)
37 3rrl_A Succinyl-COA:3-ketoacid 72.2 11 0.00038 37.6 8.4 41 485-525 12-55 (235)
38 3h14_A Aminotransferase, class 71.8 24 0.00084 35.5 11.1 102 492-600 90-199 (391)
39 3dqp_A Oxidoreductase YLBE; al 71.5 6.6 0.00023 36.7 6.3 100 496-604 2-106 (219)
40 3idf_A USP-like protein; unive 71.4 13 0.00046 31.7 7.9 60 538-601 73-137 (138)
41 4egb_A DTDP-glucose 4,6-dehydr 71.3 7.1 0.00024 38.9 6.9 110 493-604 23-149 (346)
42 2oas_A ATOA, 4-hydroxybutyrate 71.0 5.1 0.00017 43.3 6.1 97 485-581 10-130 (436)
43 3tnj_A Universal stress protei 70.2 37 0.0013 29.3 10.6 57 542-602 82-146 (150)
44 1qyd_A Pinoresinol-lariciresin 69.8 14 0.00049 36.0 8.6 102 495-601 5-114 (313)
45 3qli_A Coenzyme A transferase; 69.3 8.2 0.00028 42.2 7.3 96 484-580 29-159 (455)
46 2yvq_A Carbamoyl-phosphate syn 69.3 20 0.00069 32.6 8.9 94 492-601 24-131 (143)
47 1vim_A Hypothetical protein AF 69.0 30 0.001 32.5 10.3 37 532-568 104-140 (200)
48 2gm3_A Unknown protein; AT3G01 66.8 14 0.00047 33.2 7.2 71 539-613 95-173 (175)
49 1m3s_A Hypothetical protein YC 66.7 33 0.0011 31.4 9.9 37 532-568 94-130 (186)
50 3llv_A Exopolyphosphatase-rela 66.5 22 0.00077 30.8 8.4 91 494-601 6-101 (141)
51 2gas_A Isoflavone reductase; N 66.2 16 0.00056 35.5 8.2 99 494-601 2-110 (307)
52 1t3i_A Probable cysteine desul 66.0 1.1E+02 0.0038 30.5 14.7 101 494-600 91-204 (420)
53 1k6d_A Acetate COA-transferase 66.0 20 0.00068 35.0 8.7 44 561-610 148-195 (220)
54 1xr4_A Putative citrate lyase 65.8 48 0.0016 36.6 12.6 115 485-600 50-202 (509)
55 1qz9_A Kynureninase; kynurenin 65.5 36 0.0012 34.3 10.9 101 494-600 89-200 (416)
56 2r6j_A Eugenol synthase 1; phe 64.9 14 0.00046 36.5 7.4 96 496-601 13-113 (318)
57 3c85_A Putative glutathione-re 64.9 33 0.0011 31.2 9.5 86 494-595 39-130 (183)
58 3sho_A Transcriptional regulat 64.8 50 0.0017 30.0 10.8 38 532-569 102-139 (187)
59 1jmv_A USPA, universal stress 62.6 55 0.0019 27.8 10.1 58 539-602 72-137 (141)
60 2h1q_A Hypothetical protein; Z 62.4 15 0.00052 37.4 7.3 90 492-611 139-228 (270)
61 3isl_A Purine catabolism prote 62.4 97 0.0033 31.0 13.3 98 496-601 64-172 (416)
62 2hj0_A Putative citrate lyase, 62.1 38 0.0013 37.4 10.9 114 486-600 54-205 (519)
63 1x92_A APC5045, phosphoheptose 61.4 93 0.0032 28.7 12.1 38 532-569 128-168 (199)
64 3kax_A Aminotransferase, class 61.3 52 0.0018 32.6 10.9 101 493-600 82-194 (383)
65 2bfw_A GLGA glycogen synthase; 61.1 35 0.0012 30.7 8.9 99 492-601 34-145 (200)
66 2yv1_A Succinyl-COA ligase [AD 60.9 13 0.00046 37.8 6.6 105 494-600 71-179 (294)
67 3lvm_A Cysteine desulfurase; s 60.8 1.1E+02 0.0038 30.8 13.5 102 494-600 86-198 (423)
68 2o8r_A Polyphosphate kinase; s 60.0 9.9 0.00034 43.8 5.9 48 504-551 384-433 (705)
69 2ch1_A 3-hydroxykynurenine tra 59.6 59 0.002 32.4 11.1 98 495-600 71-178 (396)
70 1qyc_A Phenylcoumaran benzylic 59.3 26 0.00088 34.1 8.1 99 494-601 4-111 (308)
71 3ezs_A Aminotransferase ASPB; 59.0 58 0.002 32.3 10.8 104 492-600 81-192 (376)
72 3c1o_A Eugenol synthase; pheny 58.5 28 0.00095 34.2 8.3 98 495-601 5-111 (321)
73 1oi7_A Succinyl-COA synthetase 58.2 15 0.0005 37.4 6.3 106 493-600 64-173 (288)
74 3dzz_A Putative pyridoxal 5'-p 58.1 50 0.0017 32.8 10.2 102 493-601 85-199 (391)
75 1mjh_A Protein (ATP-binding do 57.8 28 0.00097 30.5 7.5 61 538-602 90-158 (162)
76 1yaa_A Aspartate aminotransfer 57.5 74 0.0025 32.2 11.5 102 493-600 96-214 (412)
77 3mt0_A Uncharacterized protein 57.2 1.2E+02 0.0039 29.5 12.5 97 505-607 23-132 (290)
78 3ab8_A Putative uncharacterize 57.2 57 0.0019 31.1 10.1 99 496-601 157-267 (268)
79 3dhn_A NAD-dependent epimerase 57.1 28 0.00096 32.2 7.6 100 495-604 5-112 (227)
80 3fdb_A Beta C-S lyase, putativ 56.7 59 0.002 32.2 10.4 102 492-600 80-188 (377)
81 3lk7_A UDP-N-acetylmuramoylala 56.7 27 0.00093 37.2 8.4 71 494-569 9-80 (451)
82 3dfz_A SIRC, precorrin-2 dehyd 56.5 11 0.00037 37.3 4.8 92 493-601 30-121 (223)
83 3cdk_A Succinyl-COA:3-ketoacid 56.2 29 0.001 34.4 8.0 44 561-610 151-198 (241)
84 3l9w_A Glutathione-regulated p 56.0 20 0.00069 38.2 7.2 93 494-603 4-103 (413)
85 1tq8_A Hypothetical protein RV 55.9 82 0.0028 28.1 10.4 61 538-602 88-157 (163)
86 3vax_A Putative uncharacterize 55.9 1.6E+02 0.0056 29.2 15.4 101 494-600 81-194 (400)
87 2z61_A Probable aspartate amin 55.9 78 0.0027 31.4 11.2 97 493-600 89-188 (370)
88 2huf_A Alanine glyoxylate amin 55.7 60 0.002 32.3 10.3 98 495-600 72-179 (393)
89 1svv_A Threonine aldolase; str 55.6 35 0.0012 33.3 8.4 102 494-601 67-183 (359)
90 2dum_A Hypothetical protein PH 55.4 21 0.00071 31.8 6.2 61 539-603 86-156 (170)
91 1kmj_A Selenocysteine lyase; p 55.3 1.7E+02 0.0057 29.0 15.4 101 494-600 86-199 (406)
92 2ctz_A O-acetyl-L-homoserine s 55.1 77 0.0026 32.8 11.4 97 495-600 75-179 (421)
93 3loq_A Universal stress protei 54.6 91 0.0031 30.2 11.2 104 496-603 173-290 (294)
94 3l8a_A METC, putative aminotra 54.5 95 0.0033 31.7 11.8 100 494-600 120-232 (421)
95 2gn4_A FLAA1 protein, UDP-GLCN 54.0 37 0.0013 34.4 8.5 112 492-606 19-144 (344)
96 1lc5_A COBD, L-threonine-O-3-p 53.9 78 0.0027 31.4 10.8 98 494-600 77-184 (364)
97 3olq_A Universal stress protei 53.7 99 0.0034 30.2 11.4 63 539-605 81-152 (319)
98 3f6p_A Transcriptional regulat 53.6 34 0.0012 28.2 6.9 78 520-605 3-83 (120)
99 1sb8_A WBPP; epimerase, 4-epim 53.4 75 0.0026 31.6 10.6 110 493-605 26-154 (352)
100 2w48_A Sorbitol operon regulat 53.4 19 0.00066 36.5 6.3 91 480-571 92-214 (315)
101 3cis_A Uncharacterized protein 53.4 1E+02 0.0034 30.2 11.4 59 544-606 100-164 (309)
102 2wm3_A NMRA-like family domain 53.3 39 0.0013 32.8 8.3 106 494-604 5-115 (299)
103 3ilh_A Two component response 53.3 43 0.0015 28.1 7.6 58 496-553 37-101 (146)
104 2q7w_A Aspartate aminotransfer 53.1 1E+02 0.0035 30.7 11.6 104 493-600 92-210 (396)
105 3f9t_A TDC, L-tyrosine decarbo 52.7 1.4E+02 0.0049 29.2 12.4 100 493-600 86-206 (397)
106 1y8q_A Ubiquitin-like 1 activa 52.7 1.8E+02 0.0061 30.1 13.6 108 483-601 26-156 (346)
107 2cb1_A O-acetyl homoserine sul 52.7 59 0.002 33.4 9.9 98 495-600 73-175 (412)
108 2hmt_A YUAA protein; RCK, KTN, 52.2 47 0.0016 28.1 7.8 92 494-601 6-102 (144)
109 2g1u_A Hypothetical protein TM 52.2 56 0.0019 29.0 8.5 93 492-601 17-116 (155)
110 1eg5_A Aminotransferase; PLP-d 52.1 1.8E+02 0.0061 28.5 14.3 101 494-600 62-176 (384)
111 3fg9_A Protein of universal st 51.8 1.2E+02 0.004 26.3 11.1 102 496-601 18-155 (156)
112 2e7j_A SEP-tRNA:Cys-tRNA synth 51.8 1.2E+02 0.0042 29.7 11.8 96 495-600 71-182 (371)
113 2z5l_A Tylkr1, tylactone synth 51.7 58 0.002 35.6 10.1 112 491-604 256-391 (511)
114 1lss_A TRK system potassium up 51.4 51 0.0017 27.8 7.8 92 494-602 4-102 (140)
115 2fr1_A Erythromycin synthase, 51.3 72 0.0025 34.4 10.7 112 491-604 223-361 (486)
116 2z9v_A Aspartate aminotransfer 51.2 1.6E+02 0.0054 29.2 12.6 99 494-600 60-169 (392)
117 2nu8_A Succinyl-COA ligase [AD 51.1 15 0.00051 37.2 5.0 104 494-599 65-172 (288)
118 2xhz_A KDSD, YRBH, arabinose 5 50.9 99 0.0034 27.9 10.2 39 531-569 110-148 (183)
119 1ek6_A UDP-galactose 4-epimera 50.9 74 0.0025 31.4 10.0 108 495-605 3-133 (348)
120 3jtx_A Aminotransferase; NP_28 50.7 52 0.0018 32.9 8.9 104 492-600 89-206 (396)
121 3h5i_A Response regulator/sens 50.6 59 0.002 27.4 8.1 81 519-606 5-89 (140)
122 4id9_A Short-chain dehydrogena 50.5 55 0.0019 32.4 9.0 97 494-604 19-126 (347)
123 1j32_A Aspartate aminotransfer 50.5 81 0.0028 31.5 10.3 102 493-601 90-202 (388)
124 1xq6_A Unknown protein; struct 50.2 69 0.0023 29.7 9.2 105 493-604 3-133 (253)
125 1vp4_A Aminotransferase, putat 49.9 75 0.0026 32.5 10.2 102 493-600 109-226 (425)
126 1vjo_A Alanine--glyoxylate ami 49.9 50 0.0017 33.0 8.6 98 495-600 87-194 (393)
127 2zc0_A Alanine glyoxylate tran 49.9 96 0.0033 31.1 10.8 101 493-600 98-213 (407)
128 1c7n_A Cystalysin; transferase 49.5 88 0.003 31.3 10.5 101 493-600 89-202 (399)
129 2yv2_A Succinyl-COA synthetase 49.5 21 0.00072 36.4 5.8 105 494-600 72-180 (297)
130 4eb5_A Probable cysteine desul 49.4 2E+02 0.0068 28.2 14.6 98 495-600 62-172 (382)
131 3qhx_A Cystathionine gamma-syn 49.3 59 0.002 33.4 9.3 97 495-600 83-186 (392)
132 1qgn_A Protein (cystathionine 49.3 90 0.0031 33.2 11.0 98 495-600 131-235 (445)
133 2pln_A HP1043, response regula 49.1 62 0.0021 27.0 8.0 77 517-605 16-96 (137)
134 3cwc_A Putative glycerate kina 48.8 13 0.00043 39.9 4.1 51 555-607 281-331 (383)
135 2lpm_A Two-component response 48.7 15 0.00051 32.7 4.0 78 517-603 6-87 (123)
136 1zud_1 Adenylyltransferase THI 48.7 1.2E+02 0.0041 29.7 11.0 109 483-602 18-150 (251)
137 3kgw_A Alanine-glyoxylate amin 48.4 93 0.0032 30.7 10.3 97 496-600 77-183 (393)
138 2yva_A DNAA initiator-associat 48.4 1.6E+02 0.0055 26.8 13.0 35 534-568 126-163 (196)
139 1n8p_A Cystathionine gamma-lya 48.3 58 0.002 33.5 9.1 97 495-600 72-177 (393)
140 3mad_A Sphingosine-1-phosphate 48.2 57 0.002 34.6 9.2 99 497-602 164-276 (514)
141 3npg_A Uncharacterized DUF364 47.9 36 0.0012 34.1 7.1 95 492-613 114-208 (249)
142 3nhm_A Response regulator; pro 47.9 69 0.0023 26.4 8.0 56 493-553 26-86 (133)
143 2x5d_A Probable aminotransfera 47.6 1.1E+02 0.0037 31.0 10.9 100 494-600 100-210 (412)
144 3acz_A Methionine gamma-lyase; 47.4 65 0.0022 32.9 9.2 98 495-600 76-179 (389)
145 1d2f_A MALY protein; aminotran 46.9 1E+02 0.0034 30.9 10.4 101 493-600 87-200 (390)
146 2xbl_A Phosphoheptose isomeras 46.2 1.7E+02 0.0059 26.6 11.6 38 531-568 130-167 (198)
147 2ay1_A Aroat, aromatic amino a 46.1 1.1E+02 0.0038 30.5 10.6 101 494-600 90-207 (394)
148 2fq6_A Cystathionine beta-lyas 46.1 53 0.0018 34.5 8.5 75 520-600 122-204 (415)
149 2bkw_A Alanine-glyoxylate amin 46.0 1.3E+02 0.0044 29.6 10.9 99 494-600 60-174 (385)
150 3cg0_A Response regulator rece 45.9 57 0.002 27.1 7.2 83 517-606 7-93 (140)
151 4f4e_A Aromatic-amino-acid ami 45.9 1.3E+02 0.0045 30.6 11.2 100 495-600 119-233 (420)
152 1o1y_A Conserved hypothetical 45.8 21 0.00073 34.9 5.0 87 517-603 10-101 (239)
153 2qzj_A Two-component response 45.5 70 0.0024 26.9 7.8 79 519-605 4-85 (136)
154 1ajs_A Aspartate aminotransfer 45.5 1.3E+02 0.0044 30.3 11.0 104 493-600 97-221 (412)
155 3eh7_A 4-hydroxybutyrate COA-t 45.5 40 0.0014 36.4 7.5 95 485-580 19-138 (434)
156 3gk7_A 4-hydroxybutyrate COA-t 45.5 42 0.0014 36.5 7.7 95 485-580 15-134 (448)
157 1fc4_A 2-amino-3-ketobutyrate 45.3 1.8E+02 0.0061 29.0 12.0 96 495-600 107-212 (401)
158 2dou_A Probable N-succinyldiam 45.3 1.9E+02 0.0064 28.7 12.0 99 495-600 89-196 (376)
159 3gpi_A NAD-dependent epimerase 45.2 22 0.00074 34.5 4.9 99 495-605 4-110 (286)
160 2dr1_A PH1308 protein, 386AA l 45.1 2.3E+02 0.008 27.7 14.1 97 496-600 74-181 (386)
161 3e48_A Putative nucleoside-dip 45.0 27 0.00091 33.8 5.5 101 496-605 2-107 (289)
162 2jl1_A Triphenylmethane reduct 45.0 54 0.0018 31.4 7.7 101 496-604 2-107 (287)
163 2nvv_A Acetyl-COA hydrolase/tr 44.9 1.1E+02 0.0036 33.8 10.8 96 485-581 9-139 (506)
164 3etn_A Putative phosphosugar i 44.8 62 0.0021 31.0 8.1 37 532-568 121-159 (220)
165 1e5e_A MGL, methionine gamma-l 44.7 1.6E+02 0.0056 30.2 11.8 98 495-600 79-183 (404)
166 2fp4_A Succinyl-COA ligase [GD 44.5 33 0.0011 35.1 6.4 105 494-600 72-181 (305)
167 3fsl_A Aromatic-amino-acid ami 44.4 2.1E+02 0.0073 28.3 12.4 100 495-600 97-211 (397)
168 3cvj_A Putative phosphoheptose 44.4 1.2E+02 0.0041 29.1 10.1 37 531-567 122-169 (243)
169 2zyj_A Alpha-aminodipate amino 44.4 77 0.0026 31.9 9.1 102 493-600 91-201 (397)
170 3eod_A Protein HNR; response r 44.2 85 0.0029 25.8 8.0 81 518-606 6-90 (130)
171 1hdo_A Biliverdin IX beta redu 44.2 44 0.0015 30.1 6.6 103 495-605 4-112 (206)
172 3t6k_A Response regulator rece 43.8 97 0.0033 26.0 8.4 79 519-605 4-88 (136)
173 3fwz_A Inner membrane protein 43.7 82 0.0028 27.5 8.1 93 494-602 7-103 (140)
174 2x4g_A Nucleoside-diphosphate- 43.5 74 0.0025 31.2 8.6 103 495-605 14-127 (342)
175 3dyd_A Tyrosine aminotransfera 43.5 82 0.0028 32.4 9.3 103 492-601 117-230 (427)
176 2g39_A Acetyl-COA hydrolase; c 43.4 1.4E+02 0.0047 32.9 11.4 95 485-581 19-144 (497)
177 1zh2_A KDP operon transcriptio 43.2 87 0.003 25.1 7.7 78 520-605 2-82 (121)
178 3m2p_A UDP-N-acetylglucosamine 43.2 1E+02 0.0034 30.1 9.5 100 495-604 3-109 (311)
179 3hdj_A Probable ornithine cycl 42.9 76 0.0026 32.4 8.8 88 493-586 120-216 (313)
180 3ftb_A Histidinol-phosphate am 42.7 73 0.0025 31.3 8.4 98 493-601 78-183 (361)
181 1gd9_A Aspartate aminotransfer 42.7 1.2E+02 0.004 30.3 10.0 102 492-600 85-198 (389)
182 2rfv_A Methionine gamma-lyase; 42.7 2.2E+02 0.0076 28.7 12.3 98 495-600 81-184 (398)
183 1zgz_A Torcad operon transcrip 42.3 89 0.0031 25.2 7.7 79 520-606 3-84 (122)
184 3ke3_A Putative serine-pyruvat 42.2 2.6E+02 0.009 28.0 12.8 99 496-601 54-174 (379)
185 3zrp_A Serine-pyruvate aminotr 42.2 90 0.0031 30.7 9.0 97 495-600 56-162 (384)
186 2okj_A Glutamate decarboxylase 41.7 1.9E+02 0.0065 30.5 12.1 103 493-600 151-280 (504)
187 3q2o_A Phosphoribosylaminoimid 41.7 7 0.00024 40.5 0.8 72 490-571 10-85 (389)
188 3rsc_A CALG2; TDP, enediyne, s 41.7 53 0.0018 33.2 7.4 21 586-606 131-151 (415)
189 1qkk_A DCTD, C4-dicarboxylate 41.7 69 0.0023 27.4 7.2 81 518-606 2-86 (155)
190 1y1p_A ARII, aldehyde reductas 41.6 87 0.003 30.5 8.8 110 492-604 9-132 (342)
191 3h2s_A Putative NADH-flavin re 41.5 46 0.0016 30.6 6.4 99 496-602 2-104 (224)
192 4gqb_A Protein arginine N-meth 41.3 41 0.0014 38.3 7.0 69 495-566 359-433 (637)
193 3ia7_A CALG4; glycosysltransfe 41.1 52 0.0018 32.8 7.2 22 586-607 115-136 (402)
194 4b4o_A Epimerase family protei 41.0 72 0.0025 31.0 8.0 18 580-597 82-99 (298)
195 2ydy_A Methionine adenosyltran 40.6 52 0.0018 32.1 6.9 100 494-605 2-112 (315)
196 4ds3_A Phosphoribosylglycinami 40.5 55 0.0019 31.9 6.9 74 496-573 11-99 (209)
197 3st7_A Capsular polysaccharide 40.4 61 0.0021 32.6 7.6 31 496-527 2-33 (369)
198 3orq_A N5-carboxyaminoimidazol 40.4 71 0.0024 32.9 8.2 72 490-571 8-83 (377)
199 3ly1_A Putative histidinol-pho 40.2 93 0.0032 30.5 8.8 98 493-600 68-178 (354)
200 4dik_A Flavoprotein; TM0755, e 40.1 2.2E+02 0.0074 30.2 12.1 68 536-606 286-362 (410)
201 3ndn_A O-succinylhomoserine su 40.1 89 0.003 32.6 9.0 98 495-600 98-201 (414)
202 1oc2_A DTDP-glucose 4,6-dehydr 39.9 19 0.00065 35.7 3.7 107 495-602 5-124 (348)
203 4ggj_A Mitochondrial cardiolip 39.9 33 0.0011 32.5 5.2 55 497-552 64-119 (196)
204 3olq_A Universal stress protei 39.8 2.2E+02 0.0074 27.7 11.3 62 538-603 235-305 (319)
205 1m32_A 2-aminoethylphosphonate 39.7 1.1E+02 0.0038 29.7 9.1 98 495-600 58-166 (366)
206 1iay_A ACC synthase 2, 1-amino 39.7 1.2E+02 0.0041 30.9 9.7 103 491-600 106-226 (428)
207 2aef_A Calcium-gated potassium 39.5 41 0.0014 31.9 5.8 92 494-604 9-107 (234)
208 3nnk_A Ureidoglycine-glyoxylat 39.5 2.6E+02 0.0089 27.7 12.1 98 495-600 65-173 (411)
209 1poi_B Glutaconate coenzyme A- 39.3 1.1E+02 0.0038 30.7 9.2 92 480-579 8-116 (260)
210 3trj_A Phosphoheptose isomeras 39.2 2.4E+02 0.0083 26.4 11.2 37 531-567 128-167 (201)
211 3asa_A LL-diaminopimelate amin 39.2 1E+02 0.0036 31.1 9.2 100 493-600 95-201 (400)
212 2yrr_A Aminotransferase, class 39.0 84 0.0029 30.4 8.1 96 495-600 54-159 (353)
213 1yiz_A Kynurenine aminotransfe 38.8 1.6E+02 0.0054 29.9 10.5 99 495-600 103-220 (429)
214 4dqv_A Probable peptide synthe 38.7 48 0.0017 35.3 6.8 112 492-604 71-214 (478)
215 2rjn_A Response regulator rece 38.7 76 0.0026 27.1 7.0 81 518-606 6-90 (154)
216 1fmc_A 7 alpha-hydroxysteroid 38.6 1.7E+02 0.0058 27.3 10.0 107 493-603 10-145 (255)
217 3nbm_A PTS system, lactose-spe 38.4 28 0.00097 30.5 4.1 55 539-602 29-85 (108)
218 7aat_A Aspartate aminotransfer 38.1 1.7E+02 0.0058 29.3 10.5 97 493-601 94-214 (401)
219 3eag_A UDP-N-acetylmuramate:L- 38.1 1.3E+02 0.0045 30.4 9.7 88 495-599 5-94 (326)
220 3g7q_A Valine-pyruvate aminotr 38.1 59 0.002 32.8 7.1 108 491-601 96-219 (417)
221 3nra_A Aspartate aminotransfer 38.1 1.5E+02 0.0052 29.5 10.1 100 494-600 103-217 (407)
222 2bwn_A 5-aminolevulinate synth 38.1 3.2E+02 0.011 27.3 13.2 72 521-600 134-213 (401)
223 1b93_A Protein (methylglyoxal 37.9 1.4E+02 0.0048 27.9 9.0 102 494-606 12-124 (152)
224 3fxa_A SIS domain protein; str 37.9 1.5E+02 0.005 27.4 9.3 35 534-568 109-143 (201)
225 3rss_A Putative uncharacterize 37.7 2.4E+02 0.0082 30.9 12.3 116 478-600 34-157 (502)
226 2i2w_A Phosphoheptose isomeras 37.6 2.6E+02 0.0089 26.1 12.9 35 533-567 147-181 (212)
227 2vsy_A XCC0866; transferase, g 37.6 2.1E+02 0.0071 30.2 11.6 97 493-602 375-483 (568)
228 3jvi_A Protein tyrosine phosph 37.5 29 0.00099 32.2 4.2 68 501-568 16-90 (161)
229 3fro_A GLGA glycogen synthase; 37.4 1.6E+02 0.0054 29.4 10.0 99 492-601 249-360 (439)
230 3if2_A Aminotransferase; YP_26 37.4 31 0.0011 35.4 4.9 107 492-600 105-244 (444)
231 1wv2_A Thiazole moeity, thiazo 37.3 1.4E+02 0.0049 30.4 9.6 114 486-603 64-195 (265)
232 3a2b_A Serine palmitoyltransfe 37.3 2.3E+02 0.0078 28.3 11.3 96 495-600 105-208 (398)
233 3ele_A Amino transferase; RER0 37.3 3E+02 0.01 27.3 12.2 103 492-600 98-216 (398)
234 2zay_A Response regulator rece 37.2 64 0.0022 27.2 6.2 82 517-606 6-93 (147)
235 3m6m_D Sensory/regulatory prot 37.1 64 0.0022 27.5 6.2 80 518-605 13-100 (143)
236 3vps_A TUNA, NAD-dependent epi 36.9 42 0.0015 32.5 5.6 26 580-605 95-120 (321)
237 2zcu_A Uncharacterized oxidore 36.8 77 0.0026 30.2 7.4 98 497-604 2-104 (286)
238 3bh0_A DNAB-like replicative h 36.7 2.8E+02 0.0097 27.7 11.9 39 490-528 64-107 (315)
239 1u08_A Hypothetical aminotrans 36.6 3.3E+02 0.011 27.0 12.3 99 495-600 93-201 (386)
240 4adb_A Succinylornithine trans 36.6 3.3E+02 0.011 27.0 12.5 102 494-600 97-222 (406)
241 3ew7_A LMO0794 protein; Q8Y8U8 36.6 72 0.0025 29.0 6.8 98 496-603 2-102 (221)
242 4dad_A Putative pilus assembly 36.6 55 0.0019 27.7 5.7 81 517-605 18-105 (146)
243 1mvo_A PHOP response regulator 36.5 1.4E+02 0.0049 24.5 8.2 78 520-605 4-85 (136)
244 4e4t_A Phosphoribosylaminoimid 36.4 29 0.00098 36.7 4.5 77 490-572 31-107 (419)
245 1bw0_A TAT, protein (tyrosine 36.4 2.1E+02 0.0072 28.7 10.9 101 493-600 104-215 (416)
246 3cis_A Uncharacterized protein 36.4 3.1E+02 0.011 26.6 12.4 57 543-603 244-306 (309)
247 2ejb_A Probable aromatic acid 36.4 68 0.0023 30.7 6.8 21 507-527 18-38 (189)
248 1qo0_D AMIR; binding protein, 36.2 28 0.00097 31.5 3.9 79 518-606 11-90 (196)
249 1pff_A Methionine gamma-lyase; 36.0 2.6E+02 0.0088 27.1 11.2 98 495-600 15-119 (331)
250 1id1_A Putative potassium chan 35.9 1.7E+02 0.0059 25.6 9.1 100 495-607 4-110 (153)
251 3oy2_A Glycosyltransferase B73 35.8 48 0.0016 33.4 5.9 98 494-601 184-303 (413)
252 1pjq_A CYSG, siroheme synthase 35.6 86 0.0029 33.6 8.2 95 493-604 11-106 (457)
253 3cog_A Cystathionine gamma-lya 35.6 1.2E+02 0.004 31.4 9.0 97 495-600 84-187 (403)
254 2o0r_A RV0858C (N-succinyldiam 35.5 3.5E+02 0.012 27.2 12.4 99 495-600 88-198 (411)
255 3e2y_A Kynurenine-oxoglutarate 35.5 1.4E+02 0.0049 29.8 9.4 100 494-600 86-205 (410)
256 1gy8_A UDP-galactose 4-epimera 35.3 1E+02 0.0036 31.0 8.4 109 494-604 2-144 (397)
257 3ec7_A Putative dehydrogenase; 35.2 2.8E+02 0.0095 28.2 11.7 112 496-611 25-154 (357)
258 3hzh_A Chemotaxis response reg 35.0 86 0.0029 27.1 6.8 82 517-606 34-122 (157)
259 3mt0_A Uncharacterized protein 34.8 1.9E+02 0.0067 27.8 10.0 63 538-604 206-277 (290)
260 1v4v_A UDP-N-acetylglucosamine 34.8 2.4E+02 0.0083 27.8 10.9 70 515-601 226-299 (376)
261 1nri_A Hypothetical protein HI 34.8 3.6E+02 0.012 27.0 12.9 54 532-587 155-211 (306)
262 3enk_A UDP-glucose 4-epimerase 34.7 1.3E+02 0.0044 29.5 8.8 109 493-604 4-129 (341)
263 3hv2_A Response regulator/HD d 34.7 81 0.0028 27.0 6.5 81 518-606 13-97 (153)
264 3ri6_A O-acetylhomoserine sulf 34.5 3.4E+02 0.012 28.5 12.6 75 520-600 122-202 (430)
265 3mm4_A Histidine kinase homolo 34.5 1.3E+02 0.0044 27.7 8.3 80 518-605 60-161 (206)
266 1cs1_A CGS, protein (cystathio 34.5 3.1E+02 0.011 27.4 11.8 98 495-600 69-172 (386)
267 3tqr_A Phosphoribosylglycinami 34.3 93 0.0032 30.4 7.5 74 497-574 10-97 (215)
268 3uwc_A Nucleotide-sugar aminot 34.2 92 0.0031 30.8 7.7 97 490-601 50-158 (374)
269 2ord_A Acoat, acetylornithine 34.1 2.3E+02 0.008 28.3 10.8 16 585-600 207-222 (397)
270 2ahu_A Putative enzyme YDIF; C 34.1 2.2E+02 0.0076 31.4 11.3 42 561-602 180-226 (531)
271 3h1g_A Chemotaxis protein CHEY 34.0 1.1E+02 0.0036 25.3 7.0 79 518-604 4-90 (129)
272 3rqi_A Response regulator prot 33.8 1.1E+02 0.0039 27.2 7.6 80 519-606 7-90 (184)
273 3two_A Mannitol dehydrogenase; 33.6 76 0.0026 32.0 7.0 53 490-549 173-225 (348)
274 1e6u_A GDP-fucose synthetase; 33.5 87 0.003 30.4 7.2 93 495-605 4-108 (321)
275 1g0o_A Trihydroxynaphthalene r 33.3 96 0.0033 30.2 7.5 106 493-601 28-161 (283)
276 3ua3_A Protein arginine N-meth 33.1 88 0.003 36.3 8.0 85 480-566 393-500 (745)
277 2vqe_K 30S ribosomal protein S 33.0 72 0.0025 29.1 6.0 46 505-553 64-111 (129)
278 1iz0_A Quinone oxidoreductase; 33.0 1.3E+02 0.0045 29.5 8.5 53 491-550 123-176 (302)
279 1mio_B Nitrogenase molybdenum 32.8 4.4E+02 0.015 28.0 13.2 94 493-602 311-410 (458)
280 2jba_A Phosphate regulon trans 32.8 1.3E+02 0.0044 24.3 7.2 78 520-605 3-86 (127)
281 2dgk_A GAD-beta, GADB, glutama 32.8 3.6E+02 0.012 27.7 12.3 97 496-600 106-228 (452)
282 4eu9_A Succinyl-COA:acetate co 32.8 1.3E+02 0.0044 33.0 9.1 95 485-579 18-146 (514)
283 3b46_A Aminotransferase BNA3; 32.8 1.4E+02 0.0048 30.9 9.1 100 494-600 119-239 (447)
284 2o1b_A Aminotransferase, class 32.7 1.6E+02 0.0054 29.9 9.3 100 494-600 110-219 (404)
285 3l5o_A Uncharacterized protein 32.6 92 0.0031 31.7 7.3 88 493-610 140-227 (270)
286 1b5p_A Protein (aspartate amin 32.4 1.9E+02 0.0065 28.9 9.8 100 494-600 92-202 (385)
287 1orr_A CDP-tyvelose-2-epimeras 32.4 1.6E+02 0.0054 28.8 9.0 106 496-604 3-125 (347)
288 3aow_A Putative uncharacterize 32.4 1.4E+02 0.0048 31.1 9.0 102 493-600 140-255 (448)
289 1tk9_A Phosphoheptose isomeras 32.2 2.8E+02 0.0096 24.9 10.8 41 527-567 120-160 (188)
290 2j48_A Two-component sensor ki 32.1 90 0.0031 24.5 6.0 78 521-606 3-86 (119)
291 3rht_A (gatase1)-like protein; 32.1 27 0.00092 35.2 3.3 81 520-607 5-91 (259)
292 3hdg_A Uncharacterized protein 32.1 91 0.0031 25.8 6.3 82 516-604 4-88 (137)
293 1lnq_A MTHK channels, potassiu 32.1 64 0.0022 32.5 6.1 89 494-601 115-208 (336)
294 3s2u_A UDP-N-acetylglucosamine 32.1 2.6E+02 0.0089 28.3 10.8 92 494-601 180-278 (365)
295 3gt7_A Sensor protein; structu 32.0 1.1E+02 0.0037 26.3 6.9 80 518-605 6-91 (154)
296 3fxa_A SIS domain protein; str 31.8 2.1E+02 0.0073 26.2 9.3 62 536-604 63-128 (201)
297 3cai_A Possible aminotransfera 31.8 3.9E+02 0.013 26.5 14.5 101 494-600 87-200 (406)
298 2fnu_A Aminotransferase; prote 31.8 1.1E+02 0.0037 30.1 7.7 94 495-600 49-153 (375)
299 3kcq_A Phosphoribosylglycinami 31.8 68 0.0023 31.4 6.0 75 496-574 12-96 (215)
300 3ez1_A Aminotransferase MOCR f 31.7 1.8E+02 0.006 29.5 9.5 105 492-600 86-212 (423)
301 1elu_A L-cysteine/L-cystine C- 31.7 3.8E+02 0.013 26.2 14.0 99 494-600 77-193 (390)
302 1u2p_A Ptpase, low molecular w 31.5 49 0.0017 30.5 4.7 67 500-568 15-89 (163)
303 2qr3_A Two-component system re 31.4 89 0.0031 25.8 6.1 85 519-606 3-91 (140)
304 3mz0_A Inositol 2-dehydrogenas 31.3 2.5E+02 0.0087 28.1 10.5 112 496-611 4-133 (344)
305 1mb3_A Cell division response 31.1 1.9E+02 0.0065 23.2 8.0 77 521-605 3-85 (124)
306 2hq1_A Glucose/ribitol dehydro 30.9 2.5E+02 0.0085 26.1 9.8 74 494-569 5-91 (247)
307 3kcn_A Adenylate cyclase homol 30.9 98 0.0033 26.4 6.4 58 492-553 25-85 (151)
308 3r0j_A Possible two component 30.8 1.5E+02 0.0051 27.9 8.2 80 518-605 22-105 (250)
309 2b69_A UDP-glucuronate decarbo 30.7 40 0.0014 33.5 4.3 108 493-604 26-142 (343)
310 4hv4_A UDP-N-acetylmuramate--L 30.4 1.2E+02 0.0042 32.7 8.3 88 494-600 22-110 (494)
311 1yio_A Response regulatory pro 30.4 1.6E+02 0.0056 26.4 8.1 80 519-606 4-87 (208)
312 1v2d_A Glutamine aminotransfer 30.3 2.9E+02 0.0099 27.3 10.6 100 494-600 79-190 (381)
313 1tt5_A APPBP1, amyloid protein 30.3 4.4E+02 0.015 29.0 12.9 108 483-601 22-155 (531)
314 1byr_A Protein (endonuclease); 30.2 1.1E+02 0.0037 26.8 6.7 55 497-551 32-88 (155)
315 2xci_A KDO-transferase, 3-deox 30.2 97 0.0033 31.7 7.2 76 516-601 222-308 (374)
316 1piw_A Hypothetical zinc-type 30.2 1.2E+02 0.0042 30.7 7.9 54 490-550 176-229 (360)
317 2oqr_A Sensory transduction pr 30.1 1.6E+02 0.0053 27.0 8.0 78 520-605 5-85 (230)
318 3d3u_A 4-hydroxybutyrate COA-t 30.1 49 0.0017 35.6 5.1 96 484-580 14-135 (439)
319 1jkx_A GART;, phosphoribosylgl 30.0 1.3E+02 0.0044 29.2 7.7 74 496-573 4-92 (212)
320 3h4t_A Glycosyltransferase GTF 30.0 1.5E+02 0.0052 30.3 8.7 98 496-604 4-125 (404)
321 1xi9_A Putative transaminase; 29.7 3.3E+02 0.011 27.3 11.1 100 494-600 102-212 (406)
322 3jyo_A Quinate/shikimate dehyd 29.6 1.6E+02 0.0055 29.5 8.6 73 493-567 126-200 (283)
323 2ri0_A Glucosamine-6-phosphate 29.5 1.5E+02 0.0052 28.3 8.1 89 488-580 22-134 (234)
324 1s8n_A Putative antiterminator 29.4 1.7E+02 0.0058 26.4 8.0 81 518-606 12-96 (205)
325 3i16_A Aluminum resistance pro 29.3 1.3E+02 0.0045 31.9 8.3 96 499-601 97-218 (427)
326 1kgs_A DRRD, DNA binding respo 29.2 1.7E+02 0.0057 26.6 8.1 79 520-606 3-85 (225)
327 3ip3_A Oxidoreductase, putativ 28.9 93 0.0032 31.3 6.7 71 496-569 4-75 (337)
328 2r2n_A Kynurenine/alpha-aminoa 28.8 3.4E+02 0.012 27.6 11.1 100 495-600 110-229 (425)
329 3op7_A Aminotransferase class 28.8 3.2E+02 0.011 26.9 10.6 100 494-600 82-192 (375)
330 3kht_A Response regulator; PSI 28.8 1E+02 0.0036 25.8 6.1 81 518-606 4-92 (144)
331 3ffh_A Histidinol-phosphate am 28.7 1.4E+02 0.0049 29.3 7.9 97 494-600 85-192 (363)
332 1jbe_A Chemotaxis protein CHEY 28.6 1.9E+02 0.0064 23.4 7.6 81 517-605 2-89 (128)
333 3i42_A Response regulator rece 28.5 1.1E+02 0.0039 24.8 6.2 80 519-606 3-88 (127)
334 3tqh_A Quinone oxidoreductase; 28.4 88 0.003 31.1 6.4 69 490-566 149-220 (321)
335 1iug_A Putative aspartate amin 28.3 89 0.0031 30.4 6.3 98 495-600 53-158 (352)
336 2pl1_A Transcriptional regulat 28.0 1.7E+02 0.0057 23.4 7.0 77 521-605 2-82 (121)
337 1edo_A Beta-keto acyl carrier 27.9 2.7E+02 0.0094 25.7 9.5 106 494-602 1-136 (244)
338 3ruy_A Ornithine aminotransfer 27.9 2.7E+02 0.0094 27.6 10.0 105 494-601 94-222 (392)
339 3grc_A Sensor protein, kinase; 27.9 1.5E+02 0.0052 24.5 7.0 81 518-606 5-91 (140)
340 1vl0_A DTDP-4-dehydrorhamnose 27.9 84 0.0029 30.1 6.0 90 495-603 13-113 (292)
341 4gek_A TRNA (CMO5U34)-methyltr 27.8 1.7E+02 0.0057 28.7 8.2 84 480-566 57-144 (261)
342 1o4s_A Aspartate aminotransfer 27.7 3.1E+02 0.011 27.3 10.4 101 493-600 101-212 (389)
343 1vmd_A MGS, methylglyoxal synt 27.6 1.5E+02 0.0052 28.5 7.5 103 494-607 28-141 (178)
344 1gc0_A Methionine gamma-lyase; 27.6 2.3E+02 0.0079 28.7 9.5 98 495-600 82-185 (398)
345 2iss_D Glutamine amidotransfer 27.5 81 0.0028 29.7 5.7 81 517-606 18-102 (208)
346 3snk_A Response regulator CHEY 27.5 66 0.0023 26.8 4.6 82 517-606 12-98 (135)
347 1ja9_A 4HNR, 1,3,6,8-tetrahydr 27.5 1.1E+02 0.0039 28.9 6.8 99 493-594 20-144 (274)
348 4e3z_A Putative oxidoreductase 27.3 3.5E+02 0.012 25.8 10.3 100 492-593 24-149 (272)
349 3d6k_A Putative aminotransfera 27.3 3.4E+02 0.012 27.5 10.8 99 491-600 91-218 (422)
350 1db3_A GDP-mannose 4,6-dehydra 27.2 1.1E+02 0.0038 30.3 6.9 108 495-604 2-132 (372)
351 2jis_A Cysteine sulfinic acid 27.1 4.3E+02 0.015 28.0 11.8 103 493-601 165-295 (515)
352 1k68_A Phytochrome response re 27.0 2.1E+02 0.0071 23.3 7.6 79 519-605 2-95 (140)
353 3rq1_A Aminotransferase class 26.9 3.1E+02 0.011 27.6 10.3 100 495-600 104-224 (418)
354 3awd_A GOX2181, putative polyo 26.9 3.9E+02 0.013 24.9 10.8 107 493-602 12-148 (260)
355 1fg7_A Histidinol phosphate am 26.9 2.2E+02 0.0076 28.2 9.1 53 494-551 76-128 (356)
356 2x6t_A ADP-L-glycero-D-manno-h 26.9 1.4E+02 0.0049 29.6 7.6 106 494-603 46-163 (357)
357 2z1m_A GDP-D-mannose dehydrata 26.8 67 0.0023 31.4 5.1 108 494-604 3-127 (345)
358 2bka_A CC3, TAT-interacting pr 26.7 1.3E+02 0.0044 28.0 6.9 106 493-604 17-132 (242)
359 1i24_A Sulfolipid biosynthesis 26.6 1.1E+02 0.0038 30.7 6.9 113 489-604 6-155 (404)
360 1eq2_A ADP-L-glycero-D-mannohe 26.6 1.7E+02 0.006 27.9 8.0 103 497-603 2-116 (310)
361 3cnb_A DNA-binding response re 26.4 1.2E+02 0.004 25.1 6.0 81 518-606 7-95 (143)
362 3nmy_A Xometc, cystathionine g 26.3 1.8E+02 0.0061 30.1 8.5 73 521-600 107-187 (400)
363 2rdm_A Response regulator rece 26.3 2E+02 0.007 23.3 7.4 80 519-605 5-89 (132)
364 3ppl_A Aspartate aminotransfer 26.3 3.6E+02 0.012 27.3 10.7 99 491-600 93-220 (427)
365 2qvg_A Two component response 26.3 1.2E+02 0.004 25.3 5.9 80 518-605 6-99 (143)
366 1rpn_A GDP-mannose 4,6-dehydra 26.2 56 0.0019 32.1 4.4 108 494-604 14-138 (335)
367 1qg8_A Protein (spore coat pol 26.2 1.5E+02 0.0051 27.6 7.3 55 496-551 6-61 (255)
368 2c5a_A GDP-mannose-3', 5'-epim 26.2 2.6E+02 0.009 28.1 9.6 103 494-604 29-145 (379)
369 3mc6_A Sphingosine-1-phosphate 26.1 1.8E+02 0.0063 30.3 8.6 102 493-601 126-242 (497)
370 2r25_B Osmosensing histidine p 26.1 1.7E+02 0.0058 24.4 6.9 57 496-552 29-89 (133)
371 3slg_A PBGP3 protein; structur 26.0 47 0.0016 33.3 3.9 104 494-603 24-141 (372)
372 2qsj_A DNA-binding response re 26.0 1.6E+02 0.0053 25.0 6.8 79 519-605 3-88 (154)
373 4hvk_A Probable cysteine desul 26.0 4.5E+02 0.016 25.3 14.7 98 495-600 62-172 (382)
374 1smk_A Malate dehydrogenase, g 26.0 2.2E+02 0.0076 28.9 9.0 100 495-597 9-118 (326)
375 3hvy_A Cystathionine beta-lyas 25.9 1.4E+02 0.0048 31.7 7.7 96 499-601 98-218 (427)
376 3oh8_A Nucleoside-diphosphate 25.9 1.7E+02 0.0059 31.3 8.5 98 494-605 147-255 (516)
377 3tsa_A SPNG, NDP-rhamnosyltran 25.9 1.3E+02 0.0045 30.0 7.2 18 585-602 125-142 (391)
378 3cg4_A Response regulator rece 25.8 1.4E+02 0.0049 24.7 6.4 81 518-603 6-89 (142)
379 2x5o_A UDP-N-acetylmuramoylala 25.7 48 0.0016 35.1 4.0 68 494-569 5-72 (439)
380 1d1q_A Tyrosine phosphatase (E 25.7 62 0.0021 29.8 4.3 72 496-568 9-94 (161)
381 3kto_A Response regulator rece 25.7 97 0.0033 25.9 5.3 83 519-607 6-92 (136)
382 2wsi_A FAD synthetase; transfe 25.7 4.3E+02 0.015 26.7 11.1 87 517-606 99-218 (306)
383 3hdv_A Response regulator; PSI 25.7 2.2E+02 0.0075 23.4 7.6 55 494-552 31-89 (136)
384 3qhp_A Type 1 capsular polysac 25.6 2E+02 0.0067 24.8 7.5 71 518-600 31-104 (166)
385 1x87_A Urocanase protein; stru 25.6 1.8E+02 0.0061 32.4 8.4 114 412-529 210-365 (551)
386 3jte_A Response regulator rece 25.6 2.2E+02 0.0077 23.5 7.6 78 518-603 2-85 (143)
387 3la8_A SMU.1229, putative puri 25.5 1.7E+02 0.0058 30.3 7.9 76 498-605 188-266 (303)
388 3auf_A Glycinamide ribonucleot 25.4 1.7E+02 0.0057 28.8 7.6 75 497-574 27-115 (229)
389 3sc6_A DTDP-4-dehydrorhamnose 25.3 33 0.0011 33.0 2.5 26 579-604 82-107 (287)
390 3sxp_A ADP-L-glycero-D-mannohe 25.3 49 0.0017 33.2 3.9 110 493-603 9-138 (362)
391 3tcm_A Alanine aminotransferas 25.3 3.2E+02 0.011 28.9 10.5 103 492-600 156-275 (500)
392 3uog_A Alcohol dehydrogenase; 25.3 2.1E+02 0.0071 29.0 8.7 54 490-550 186-239 (363)
393 4b8w_A GDP-L-fucose synthase; 25.2 90 0.0031 29.8 5.6 52 554-605 52-114 (319)
394 3ps9_A TRNA 5-methylaminomethy 25.2 1.3E+02 0.0045 33.4 7.6 66 485-552 203-303 (676)
395 2cwd_A Low molecular weight ph 25.2 57 0.0019 30.1 4.0 70 500-570 15-92 (161)
396 2gb3_A Aspartate aminotransfer 25.2 2.9E+02 0.0098 27.9 9.7 100 494-600 103-212 (409)
397 2a9v_A GMP synthase; structura 25.2 88 0.003 29.8 5.4 81 518-603 12-93 (212)
398 3sho_A Transcriptional regulat 25.0 3.7E+02 0.013 24.0 10.9 89 485-604 30-123 (187)
399 3t18_A Aminotransferase class 24.9 3.9E+02 0.013 26.8 10.6 100 495-600 103-223 (413)
400 1z45_A GAL10 bifunctional prot 24.9 1.9E+02 0.0065 32.1 8.8 109 494-605 11-136 (699)
401 2pzm_A Putative nucleotide sug 24.9 54 0.0019 32.4 4.0 107 493-605 19-137 (330)
402 2rh8_A Anthocyanidin reductase 24.8 3.4E+02 0.012 26.4 9.9 108 494-604 9-131 (338)
403 3jzl_A Putative cystathionine 24.8 2.3E+02 0.008 29.6 9.1 78 519-601 101-201 (409)
404 3da8_A Probable 5'-phosphoribo 24.8 1E+02 0.0036 30.1 6.0 74 497-574 17-103 (215)
405 1e3j_A NADP(H)-dependent ketos 24.7 1.8E+02 0.0061 29.3 8.0 54 490-550 165-218 (352)
406 3ehe_A UDP-glucose 4-epimerase 24.7 93 0.0032 30.3 5.7 99 496-604 3-114 (313)
407 5nul_A Flavodoxin; electron tr 24.5 1.3E+02 0.0043 25.9 5.9 64 537-602 20-86 (138)
408 3gt7_A Sensor protein; structu 24.4 1.5E+02 0.0052 25.4 6.4 54 494-552 31-89 (154)
409 3ijp_A DHPR, dihydrodipicolina 24.3 64 0.0022 33.0 4.5 94 495-603 22-120 (288)
410 2o0m_A Transcriptional regulat 24.3 1E+02 0.0035 31.6 6.1 91 481-572 125-246 (345)
411 3tqx_A 2-amino-3-ketobutyrate 24.1 3.4E+02 0.012 26.8 9.8 96 495-600 105-210 (399)
412 3heb_A Response regulator rece 24.1 1.2E+02 0.0042 25.7 5.7 59 496-554 32-99 (152)
413 3ius_A Uncharacterized conserv 24.1 1.4E+02 0.0048 28.4 6.7 96 495-605 6-104 (286)
414 3n8i_A Low molecular weight ph 24.0 78 0.0027 29.2 4.7 75 496-570 7-93 (157)
415 2r5f_A Transcriptional regulat 24.0 1.8E+02 0.0063 28.7 7.7 99 484-584 48-174 (264)
416 3fbg_A Putative arginate lyase 23.9 1.9E+02 0.0064 29.1 8.0 51 493-550 150-201 (346)
417 1bs0_A Protein (8-amino-7-oxon 23.8 3.1E+02 0.011 27.1 9.5 97 495-600 101-203 (384)
418 2jhf_A Alcohol dehydrogenase E 23.8 2.6E+02 0.0091 28.3 9.1 54 490-549 188-241 (374)
419 2ggs_A 273AA long hypothetical 23.8 74 0.0025 30.1 4.6 98 496-605 2-109 (273)
420 3mje_A AMPHB; rossmann fold, o 23.7 2.5E+02 0.0085 30.5 9.3 109 495-604 240-375 (496)
421 4ffl_A PYLC; amino acid, biosy 23.7 31 0.0011 35.1 2.0 67 496-572 3-74 (363)
422 1r6d_A TDP-glucose-4,6-dehydra 23.7 1.2E+02 0.004 29.8 6.2 108 496-604 2-127 (337)
423 3nzo_A UDP-N-acetylglucosamine 23.6 6.1E+02 0.021 26.0 12.3 109 494-604 35-165 (399)
424 1f0k_A MURG, UDP-N-acetylgluco 23.6 3.7E+02 0.013 26.2 9.9 66 519-601 212-280 (364)
425 4gud_A Imidazole glycerol phos 23.6 48 0.0016 31.1 3.2 73 521-603 4-80 (211)
426 3frk_A QDTB; aminotransferase, 23.5 96 0.0033 30.9 5.6 95 495-600 53-156 (373)
427 4fzr_A SSFS6; structural genom 23.5 1.2E+02 0.0041 30.5 6.4 19 587-605 136-154 (398)
428 1p0f_A NADP-dependent alcohol 23.4 2.6E+02 0.0089 28.3 9.0 54 490-549 188-241 (373)
429 1meo_A Phosophoribosylglycinam 23.4 1.7E+02 0.0059 28.2 7.2 74 496-573 4-92 (209)
430 3r8n_K 30S ribosomal protein S 23.3 62 0.0021 29.0 3.7 46 505-553 54-101 (117)
431 3k5w_A Carbohydrate kinase; 11 23.3 2.4E+02 0.0083 30.7 9.1 95 476-576 28-127 (475)
432 3j20_M 30S ribosomal protein S 23.1 1.1E+02 0.0038 28.2 5.4 49 505-553 63-118 (137)
433 1k66_A Phytochrome response re 23.1 1.9E+02 0.0064 24.0 6.6 81 516-604 3-101 (149)
434 3goh_A Alcohol dehydrogenase, 23.1 1E+02 0.0035 30.5 5.6 46 490-540 139-184 (315)
435 2qxy_A Response regulator; reg 23.0 1.9E+02 0.0064 24.0 6.6 79 519-606 4-86 (142)
436 3ilh_A Two component response 23.0 3.2E+02 0.011 22.5 8.5 83 516-606 6-103 (146)
437 2px0_A Flagellar biosynthesis 23.0 1.7E+02 0.0057 29.4 7.3 37 492-530 103-145 (296)
438 4eye_A Probable oxidoreductase 22.9 2.3E+02 0.0078 28.5 8.3 53 490-549 156-209 (342)
439 3lua_A Response regulator rece 22.8 2.4E+02 0.0084 23.3 7.3 81 518-605 3-91 (140)
440 2r85_A PURP protein PF1517; AT 22.8 1.3E+02 0.0043 29.6 6.3 20 532-551 12-31 (334)
441 1qdl_B Protein (anthranilate s 22.7 2.6E+02 0.0089 25.9 8.1 75 522-602 4-84 (195)
442 3grc_A Sensor protein, kinase; 22.6 2.3E+02 0.0077 23.4 7.1 76 494-575 30-110 (140)
443 3h5n_A MCCB protein; ubiquitin 22.5 4.4E+02 0.015 27.1 10.6 98 494-601 118-240 (353)
444 1omo_A Alanine dehydrogenase; 22.5 3.9E+02 0.013 27.0 10.0 89 492-585 123-219 (322)
445 1qv9_A F420-dependent methylen 22.5 2.2E+02 0.0074 29.1 7.7 47 507-554 54-101 (283)
446 2lpm_A Two-component response 22.4 43 0.0015 29.6 2.4 48 499-551 38-86 (123)
447 1uwk_A Urocanate hydratase; hy 22.4 1.8E+02 0.006 32.5 7.6 114 412-529 215-370 (557)
448 3qp9_A Type I polyketide synth 22.4 2.2E+02 0.0075 31.0 8.6 113 490-604 247-402 (525)
449 3hn7_A UDP-N-acetylmuramate-L- 22.3 2E+02 0.0069 31.2 8.3 90 494-600 19-109 (524)
450 3rft_A Uronate dehydrogenase; 22.3 1.2E+02 0.0042 29.0 5.9 98 494-604 3-111 (267)
451 3oks_A 4-aminobutyrate transam 22.3 4.3E+02 0.015 27.3 10.6 37 564-600 228-266 (451)
452 3hdv_A Response regulator; PSI 22.3 2.2E+02 0.0076 23.3 6.9 81 518-606 6-92 (136)
453 2a9o_A Response regulator; ess 22.3 2.6E+02 0.0089 22.1 7.2 77 521-605 3-82 (120)
454 1pl8_A Human sorbitol dehydrog 22.2 2.1E+02 0.0072 28.9 7.9 55 490-550 168-222 (356)
455 1e3i_A Alcohol dehydrogenase, 22.2 2.8E+02 0.0097 28.1 9.0 54 490-549 192-245 (376)
456 3osu_A 3-oxoacyl-[acyl-carrier 22.2 1.7E+02 0.0059 27.7 6.9 105 494-601 4-138 (246)
457 3okp_A GDP-mannose-dependent a 22.2 1.9E+02 0.0064 28.4 7.4 100 495-601 199-309 (394)
458 3czc_A RMPB; alpha/beta sandwi 22.2 2.4E+02 0.0083 24.1 7.2 35 536-570 39-76 (110)
459 2fkn_A Urocanate hydratase; ro 22.0 1.8E+02 0.006 32.5 7.5 114 412-529 211-366 (552)
460 1wl8_A GMP synthase [glutamine 21.9 2.4E+02 0.0082 25.8 7.7 73 522-603 3-80 (189)
461 3lkv_A Uncharacterized conserv 21.9 39 0.0014 33.5 2.3 41 557-604 189-229 (302)
462 1uuf_A YAHK, zinc-type alcohol 21.9 1.6E+02 0.0055 30.1 7.1 53 490-549 191-243 (369)
463 1dih_A Dihydrodipicolinate red 21.9 41 0.0014 33.7 2.5 95 495-603 6-104 (273)
464 3jx9_A Putative phosphoheptose 21.9 81 0.0028 29.9 4.3 33 490-522 74-109 (170)
465 2xzm_K RPS14E; ribosome, trans 21.9 2.5E+02 0.0085 26.3 7.6 49 505-553 77-132 (151)
466 3heb_A Response regulator rece 21.8 3.4E+02 0.012 22.8 8.1 81 518-606 3-100 (152)
467 2hqr_A Putative transcriptiona 21.8 2E+02 0.0067 26.3 7.0 73 521-605 2-78 (223)
468 3get_A Histidinol-phosphate am 21.8 2.4E+02 0.0083 27.6 8.1 97 494-600 83-190 (365)
469 2q1s_A Putative nucleotide sug 21.8 1.3E+02 0.0044 30.4 6.2 106 493-604 31-151 (377)
470 2pb2_A Acetylornithine/succiny 21.7 6.4E+02 0.022 25.6 12.3 102 494-600 115-240 (420)
471 2gkg_A Response regulator homo 21.7 1.4E+02 0.0049 23.8 5.4 78 520-605 6-89 (127)
472 3r5e_A Transaldolase; pentose 21.7 1.1E+02 0.0038 32.5 5.7 65 491-558 100-171 (360)
473 3klo_A Transcriptional regulat 21.7 2.1E+02 0.0071 26.3 7.2 81 517-605 5-93 (225)
474 3p9x_A Phosphoribosylglycinami 21.6 1.9E+02 0.0066 28.1 7.2 75 496-574 6-95 (211)
475 1yqd_A Sinapyl alcohol dehydro 21.6 2.7E+02 0.0093 28.2 8.7 38 491-530 184-222 (366)
476 3f0h_A Aminotransferase; RER07 21.5 5.7E+02 0.019 24.9 12.6 98 495-600 72-179 (376)
477 2l82_A Designed protein OR32; 21.5 1.8E+02 0.0063 26.2 6.3 57 495-553 81-138 (162)
478 1bvy_F Protein (cytochrome P45 21.5 89 0.003 29.6 4.6 65 536-602 42-110 (191)
479 2cf5_A Atccad5, CAD, cinnamyl 21.5 2.3E+02 0.008 28.6 8.1 38 491-530 177-215 (357)
480 3afn_B Carbonyl reductase; alp 21.4 4.1E+02 0.014 24.6 9.3 76 493-570 6-94 (258)
481 1cdo_A Alcohol dehydrogenase; 21.4 3.1E+02 0.011 27.7 9.1 54 490-549 189-242 (374)
482 3f6c_A Positive transcription 21.4 1.5E+02 0.0051 24.3 5.6 79 520-606 2-85 (134)
483 3beo_A UDP-N-acetylglucosamine 21.4 3.3E+02 0.011 26.5 9.0 69 517-601 236-307 (375)
484 2oga_A Transaminase; PLP-depen 21.3 3.3E+02 0.011 27.3 9.2 94 495-600 80-183 (399)
485 2ywr_A Phosphoribosylglycinami 21.2 3.2E+02 0.011 26.3 8.6 75 497-574 6-94 (216)
486 3qvo_A NMRA family protein; st 21.1 2.7E+02 0.0091 26.0 7.9 97 495-604 24-125 (236)
487 1q77_A Hypothetical protein AQ 21.0 1.2E+02 0.0041 25.6 5.0 29 561-601 109-137 (138)
488 4ffc_A 4-aminobutyrate aminotr 20.9 3.8E+02 0.013 27.8 9.8 37 564-600 226-264 (453)
489 3cnb_A DNA-binding response re 20.8 1.9E+02 0.0066 23.7 6.2 55 494-553 33-93 (143)
490 3o8q_A Shikimate 5-dehydrogena 20.7 3.2E+02 0.011 27.3 8.8 98 493-597 125-239 (281)
491 3ffr_A Phosphoserine aminotran 20.7 3E+02 0.01 26.6 8.4 96 495-601 63-167 (362)
492 3lte_A Response regulator; str 20.7 3.4E+02 0.012 21.9 7.9 52 518-570 5-59 (132)
493 1i1q_B Anthranilate synthase c 20.6 3.7E+02 0.013 24.6 8.7 74 521-602 2-83 (192)
494 4f6c_A AUSA reductase domain p 20.6 1.4E+02 0.0047 30.8 6.2 110 494-607 69-200 (427)
495 2c20_A UDP-glucose 4-epimerase 20.6 1.8E+02 0.0063 28.2 6.9 101 496-604 3-118 (330)
496 1vef_A Acetylornithine/acetyl- 20.6 4.4E+02 0.015 26.1 9.9 36 564-600 187-224 (395)
497 3euc_A Histidinol-phosphate am 20.4 3.5E+02 0.012 26.5 9.0 100 494-600 86-197 (367)
498 3mm4_A Histidine kinase homolo 20.4 3.2E+02 0.011 25.0 8.2 58 496-553 88-160 (206)
499 3e9k_A Kynureninase; kynurenin 20.2 2.8E+02 0.0095 28.6 8.5 101 494-600 129-249 (465)
500 1xhf_A DYE resistance, aerobic 20.2 3.3E+02 0.011 21.7 7.5 78 520-605 4-84 (123)
No 1
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=100.00 E-value=9.9e-62 Score=517.59 Aligned_cols=273 Identities=19% Similarity=0.256 Sum_probs=255.7
Q ss_pred Cceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCc
Q 006803 337 NRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGK 410 (630)
Q Consensus 337 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~ 410 (630)
+.|.|| +.||++..|..|.++++.+.+|+.|+ |+| |.++|++|+++++++.....|
T Consensus 26 ~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaI--------------giaaa~~l~l~~~~~~~~~~~---- 87 (383)
T 2a0u_A 26 GSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAI--------------AVSAALGIAVATQRKAANGEL---- 87 (383)
T ss_dssp TEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHHHHHHHSSC----
T ss_pred CEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCCCCCcHHH--------------HHHHHHHHHHHHHhhcccccC----
Confidence 479999 99999999999999999999999999 999 999999999999998765444
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006803 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATK 490 (630)
Q Consensus 411 ~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~ 490 (630)
....+|.+.|+..+++|.++|||++||+|++++|++.+.....+.+.+++|+.|++.+++|++|++ .+++.|+++|+++
T Consensus 88 ~~~~~l~~~l~~~~~~L~~aRPtavnL~na~~r~~~~i~~~~~~~~~~~~k~~l~~~a~~i~~e~~-~~~~~I~~~g~~~ 166 (383)
T 2a0u_A 88 KSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDV-AFNEGIMRHGAAH 166 (383)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 235789999999999999999999999999999999987643334678999999999999999976 7999999999999
Q ss_pred cc--------CCCEEEeecCh--------HHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HHHHHHhCCCcEEEEcch
Q 006803 491 VR--------DGDVLLTYGSS--------CVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LLRRLLAKGLSCTYTHIN 553 (630)
Q Consensus 491 I~--------dgdvILT~g~S--------~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La~eL~~~GI~vTlI~Ds 553 (630)
|. +|++||||||| +||+++|+.|+++|++|+|||+||||++||.+ ++|+|.+.|||||||+||
T Consensus 167 I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Ds 246 (383)
T 2a0u_A 167 ILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDG 246 (383)
T ss_dssp HHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGG
T ss_pred hhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehh
Confidence 99 99999999999 59999999999999999999999999999986 569999999999999999
Q ss_pred hHHHHhcc--ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 554 AVSYIMHE--VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 554 Av~~iM~~--Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
|++|+|++ ||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.+++|..+.||+|||+||+
T Consensus 247 a~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~ 323 (383)
T 2a0u_A 247 AASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEIT 323 (383)
T ss_dssp GHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHH
T ss_pred HHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhc
Confidence 99999998 9999999999999999999999999999999999999999999999999999999999999999985
No 2
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=100.00 E-value=3.1e-61 Score=512.39 Aligned_cols=266 Identities=20% Similarity=0.307 Sum_probs=249.8
Q ss_pred Cceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCc
Q 006803 337 NRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGK 410 (630)
Q Consensus 337 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~ 410 (630)
+.|.|| +.||++..|+.|.++++.+.+|++|+ |+| |.++|+++++++++.. +
T Consensus 37 ~~l~ilDq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaI--------------giaaa~~l~l~~~~~~----~---- 94 (374)
T 2yvk_A 37 TAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAI--------------GITAAFGLALAAKDIE----T---- 94 (374)
T ss_dssp SCEEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHTTCC----C----
T ss_pred CEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCccCCcHHH--------------HHHHHHHHHHHHHhcc----C----
Confidence 479999 99999999999999999999999999 999 9999999999987642 1
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006803 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATK 490 (630)
Q Consensus 411 ~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~ 490 (630)
....+|.+.|+..+++|.++|||++||+|++++|++.+... .+.+++|+.+++.+++|++|++ .+++.|+++|+++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~aRPtavnL~~ai~r~~~~i~~~---~~~~~~k~~l~~~a~~~~~e~~-~~~~~I~~~g~~~ 170 (374)
T 2yvk_A 95 DNVTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENA---ISVNEAKTNLVHEAIQIQVEDE-ETCRLIGQNALQL 170 (374)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTTC---SSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 24578999999999999999999999999999999888643 3688999999999999999976 7899999999999
Q ss_pred ccCCCEEEeecCh--------HHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcchhHHHHhcc
Q 006803 491 VRDGDVLLTYGSS--------CVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSYIMHE 561 (630)
Q Consensus 491 I~dgdvILT~g~S--------~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~ 561 (630)
|++|++||||||| +||+++|+.|+++|++|+|||+||||++||.+| +|+|.+.||+||||+|||++|+|++
T Consensus 171 I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~~ 250 (374)
T 2yvk_A 171 FKKGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKE 250 (374)
T ss_dssp CCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHH
T ss_pred hCCCCEEEEecCCCccccCCCcHHHHHHHHHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhhh
Confidence 9999999999998 589999999999999999999999999999875 6999999999999999999999997
Q ss_pred --ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 562 --VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 562 --Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.+++|..+.||+|||+||+
T Consensus 251 ~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~ 319 (374)
T 2yvk_A 251 KQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVR 319 (374)
T ss_dssp TTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHH
T ss_pred cCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCccccccccCCHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999975
No 3
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=100.00 E-value=1e-60 Score=504.37 Aligned_cols=263 Identities=21% Similarity=0.272 Sum_probs=245.1
Q ss_pred Cceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCc
Q 006803 337 NRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGK 410 (630)
Q Consensus 337 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~ 410 (630)
+.|.|| +.||++.+|..|.++++.+.+|++|+ |+| |.++|++|++++++... .
T Consensus 15 ~~~~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGAp~i--------------g~aaa~~l~l~~~~~~~--~----- 73 (347)
T 1t9k_A 15 NSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAI--------------GVAAAFGYVLGLRDYKT--G----- 73 (347)
T ss_dssp SCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTSSCSHHHH--------------HHHHHHHHHHHHHTCCS--S-----
T ss_pred CEEEEEeCCCCCCceEEEEeCCHHHHHHHHHhCCcCCcHHH--------------HHHHHHHHHHHHHhccc--C-----
Confidence 479999 99999999999999999999999998 999 99999999999886431 0
Q ss_pred chHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006803 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATK 490 (630)
Q Consensus 411 ~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~ 490 (630)
. ..+.|+..+++|.++|||++||+|++++|++.+.... +.+++|+.+++.+++|++|++ .+++.|+++|+++
T Consensus 74 -~---~~~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i~~~~---~~~~~k~~l~~~~~~~~~e~~-~~~~~I~~~g~~~ 145 (347)
T 1t9k_A 74 -S---LTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENA---DRENLFEILENEALKMAYEDI-EVNKAIGKNGAQL 145 (347)
T ss_dssp -C---HHHHHHHHHHHHHTSCSSCTHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred -C---HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1 1245999999999999999999999999999987543 456799999999999999966 7899999999999
Q ss_pred ccCCCEEEeecChH--------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcchhHHHHhcc
Q 006803 491 VRDGDVLLTYGSSC--------VVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSYIMHE 561 (630)
Q Consensus 491 I~dgdvILT~g~S~--------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~ 561 (630)
|++|++|||||||+ ||+++|+.||++|++|+|||+||||++||.+| +|+|.+.|||||||+|||++|+|++
T Consensus 146 I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~ 225 (347)
T 1t9k_A 146 IKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKR 225 (347)
T ss_dssp SCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHT
T ss_pred hCCCCEEEEecCCCccccCCccHHHHHHHHHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHhhc
Confidence 99999999999999 99999999999999999999999999999875 6999999999999999999999987
Q ss_pred --ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 562 --VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 562 --Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.+++|..+.||+|||+||+
T Consensus 226 ~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iE~r~~~ev~ 294 (347)
T 1t9k_A 226 GLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVT 294 (347)
T ss_dssp TCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHH
T ss_pred CCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeccccCCccccccccCChHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999975
No 4
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=100.00 E-value=4.9e-60 Score=499.88 Aligned_cols=262 Identities=21% Similarity=0.305 Sum_probs=245.8
Q ss_pred eeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcch
Q 006803 339 VELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTL 412 (630)
Q Consensus 339 v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~ 412 (630)
|.|| +.||++..|+.|.++++.+.+|+.|+ |+| |.++|++|++++++.. + ..
T Consensus 12 l~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApai--------------~iaaa~~l~l~~~~~~----~----~~ 69 (351)
T 1t5o_A 12 LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPAL--------------EAAGAYGIALAARERE----F----AD 69 (351)
T ss_dssp EEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHTTSSC----C----SC
T ss_pred EEEEecCCCCCeEEEEEeCCHHHHHHHHHhCCcCCcHHH--------------HHHHHHHHHHHHHhcc----C----CC
Confidence 9999 99999999999999999999999999 999 9999999999877531 1 24
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006803 413 VRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVR 492 (630)
Q Consensus 413 ~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~ 492 (630)
..+|.+.|+..+++|.++|||++||+|++++|++.+... .+.+++|+.+++.+++|++|++ .+++.|+++|+++|+
T Consensus 70 ~~~l~~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i~~~---~~~~~~k~~l~~~~~~~~~e~~-~~~~~I~~~g~~~I~ 145 (351)
T 1t5o_A 70 VDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALKG---ESVEEVKELALREAEKLAEEDV-ERNRKMGEYGAELLE 145 (351)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999999988652 4788999999999999999976 789999999999999
Q ss_pred CCCEEEeecCh--------HHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcchhHHHHhcc--
Q 006803 493 DGDVLLTYGSS--------CVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSYIMHE-- 561 (630)
Q Consensus 493 dgdvILT~g~S--------~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~-- 561 (630)
+|++||||||| +||+++|+.|+++|++|+|||+||||++||.+| +|+|.+.|||||||+|+|++|+|++
T Consensus 146 ~g~~ILThcnsg~lat~g~gtal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~ 225 (351)
T 1t5o_A 146 DGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGM 225 (351)
T ss_dssp TTCEEEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTC
T ss_pred CCCEEEEecCCccccccCCChHHHHHHHHHHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCC
Confidence 99999999998 589999999999999999999999999999875 6999999999999999999999987
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
||+||||||+|++|| ++||+|||++|++||+||||||||||+|||++. +.+..+.||+|||+||+
T Consensus 226 Vd~VivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~-~~g~~i~iEer~~~ev~ 290 (351)
T 1t5o_A 226 VDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELI 290 (351)
T ss_dssp CSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCGGGBCTT-CCGGGCCCCBCCTHHHH
T ss_pred CCEEEECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCccceeccc-cCCCccccccCCHHHhc
Confidence 999999999999999 999999999999999999999999999999999 99999999999999975
No 5
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=100.00 E-value=4e-59 Score=490.93 Aligned_cols=258 Identities=24% Similarity=0.347 Sum_probs=230.7
Q ss_pred ccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHH
Q 006803 348 YEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSY 423 (630)
Q Consensus 348 ~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~ 423 (630)
-.+|..|.++++.+.+|++|+ |+| |.+++++|.++++ .+.+ ....+|.+.|+..
T Consensus 14 ~~~~~~~~~~~~~~~aI~~m~VrGApai--------------~iaaa~~l~~~~~----~~~~----~~~~~l~~~l~~~ 71 (338)
T 3a11_A 14 GRHMAVVKEVLEIAEKIKNMEIRGAGKI--------------ARSAAYALQLQAE----KSKA----TNVDEFWKEMKQA 71 (338)
T ss_dssp -----CCSHHHHHHHHHHTCSSCSHHHH--------------HHHHHHHHHHHHH----HCCC----CSHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHhCcEeCcHHH--------------HHHHHHHHHHHHH----hccC----CCHHHHHHHHHHH
Confidence 356777888899888888887 666 6666666655554 3433 2357899999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecC
Q 006803 424 VSFLIECRPLSMSMGNAIRFQKSRIAK-LPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGS 502 (630)
Q Consensus 424 i~~L~~aRPtsVsLgNAIrrlk~~I~~-~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~ 502 (630)
+++|.++|||++||+|++++|++.+.. +....+.+++|+.|++.+++|++|++ .+++.|+++|+++|++|++||||||
T Consensus 72 ~~~L~~aRPtav~L~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e~~-~~~~~I~~~g~~~I~~g~~ILTh~~ 150 (338)
T 3a11_A 72 AKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSE-KALERIGEFGAKRIEDGDVIMTHCH 150 (338)
T ss_dssp HHHHHTTCTTCSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999999998864 11234788999999999999999965 7899999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceeccc
Q 006803 503 SCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRV 582 (630)
Q Consensus 503 S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKi 582 (630)
|+||+++|+.|+++|++|+|||+||||++||+.++++|.+.||+||||+|||++|+|.+||+||||||+|++||+++||+
T Consensus 151 S~tvl~~l~~A~~~gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKi 230 (338)
T 3a11_A 151 SKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKI 230 (338)
T ss_dssp CHHHHHHHHHHHHTTCCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEET
T ss_pred cHHHHHHHHHHHHCCCeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 583 GTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 583 GT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
|||++|++||+||||||||||+|||++.+++|.++.||+|||+||+
T Consensus 231 GT~~lAl~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~~~ev~ 276 (338)
T 3a11_A 231 GTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVI 276 (338)
T ss_dssp THHHHHHHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCCGGGTS
T ss_pred cHHHHHHHHHHcCCCEEEecccceecccCCCCcccccccCCHHHcc
Confidence 9999999999999999999999999999999999999999999986
No 6
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=100.00 E-value=1.6e-53 Score=437.07 Aligned_cols=240 Identities=22% Similarity=0.270 Sum_probs=226.3
Q ss_pred chhhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHH
Q 006803 367 MHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKS 446 (630)
Q Consensus 367 mhPAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~ 446 (630)
+||.+..+...+.+.++.|+.+.|++++.+|..++.++ + ..+|++.|+..+++|.++|||++||+|++++|
T Consensus 2 l~~~~~~~~~~i~~~~vrGa~~i~~aa~~~l~~~~~~~-~------~~~~~~~l~~~~~~L~~~RPtav~l~~a~~~~-- 72 (276)
T 1vb5_A 2 LPERVLEILREMKRERIKGASWLAKKGAEAFLTLAEEL-D------ESLLEDAIMELREEVVKVNPSMASLYNLARFI-- 72 (276)
T ss_dssp CCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHS-C------TTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHS--
T ss_pred CcccHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc-C------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHc--
Confidence 67889999999999999999999999999999999877 2 24688999999999999999999999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcC
Q 006803 447 RIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVD 526 (630)
Q Consensus 447 ~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~E 526 (630)
. .+++|+.+++.+++|++| +..+++.|+++++++|++|++|||||+|+|++++|+.|+++|++|+|||+|
T Consensus 73 ---~------~~~~k~~l~~~~~~~~~~-~~~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~e 142 (276)
T 1vb5_A 73 ---P------VTNRRDILKSRALEFLRR-MEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTE 142 (276)
T ss_dssp ---C------CCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---C------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeC
Confidence 1 245688899999999987 568999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 527 SRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 527 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
|||++||+.++++|.+.||+||||+|++++++|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+||
T Consensus 143 trP~~qG~~~a~~L~~~gI~vtli~dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K 222 (276)
T 1vb5_A 143 SSPDYEGLHLARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 222 (276)
T ss_dssp CTTTTHHHHHHHHHHHTTCCEEEECGGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGG
T ss_pred CCcchhhHHHHHHHHHCCCCEEEEcHHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEeccccc
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcccccccCccc
Q 006803 607 FHERVQLDSICSNELGMLVL 626 (630)
Q Consensus 607 f~~r~~~ds~i~nElrdP~E 626 (630)
|++. +.+.++.||+|||+|
T Consensus 223 ~~~~-~~~~~i~iE~r~~~e 241 (276)
T 1vb5_A 223 FHPT-LKSGDVMLMERDLIR 241 (276)
T ss_dssp BCSS-CCGGGCCCCBCCCEE
T ss_pred cCcc-cCccccccccCCccc
Confidence 9999 889999999999976
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=100.00 E-value=6.2e-52 Score=432.41 Aligned_cols=235 Identities=24% Similarity=0.309 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 006803 388 ARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLP-LTLSETEAKAALCN 466 (630)
Q Consensus 388 arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~-~~~s~~eaKe~L~e 466 (630)
+.+++.+.+|.+++....+ ++..+|.+.|+..+++|.++|| +++|+|+++++++.|.... ...+.+++|+.|++
T Consensus 21 s~aiAAi~aL~~~l~~s~~----~T~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~ 95 (315)
T 3ecs_A 21 ASAVAAIRTLLEFLKRDKG----ETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLASLEYSDYSKCKKIMIE 95 (315)
T ss_dssp CHHHHHHHHHHHHHTCCC--------CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC-----------CTTHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 5567888889999987654 4567899999999999999997 8899999999998764321 22357889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCc
Q 006803 467 DIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS 546 (630)
Q Consensus 467 ~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~ 546 (630)
.++.|+++ +..+++.|+++|.++|++|++|||||+|+||+++|+.|+++|++|+|||+||||++||.+|+|+|.+.||+
T Consensus 96 ~~~~~~~~-~~~a~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~ 174 (315)
T 3ecs_A 96 RGELFLRR-ISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVP 174 (315)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCC
Confidence 99999854 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCC-CcccccccCcc
Q 006803 547 CTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLD-SICSNELGMLV 625 (630)
Q Consensus 547 vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~d-s~i~nElrdP~ 625 (630)
||||+|+|++|+|++||+||+|||+|++||+++||+|||++|++||+||||||||||+|||++.++++ ..+.+|++++.
T Consensus 175 vtli~Dsa~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~~~~ 254 (315)
T 3ecs_A 175 VTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKA 254 (315)
T ss_dssp EEEECGGGHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGTC--
T ss_pred EEEEehhHHHHHHHhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEeccccccccCCCCcccCCccccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 55689999998
Q ss_pred ccc
Q 006803 626 LVL 628 (630)
Q Consensus 626 EVl 628 (630)
|++
T Consensus 255 ev~ 257 (315)
T 3ecs_A 255 DTL 257 (315)
T ss_dssp ---
T ss_pred hcc
Confidence 874
No 8
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=2.3e-36 Score=295.46 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=108.7
Q ss_pred CCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcchhHHHHhcc----ccEEEEcceeEecCCceecccchHHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSYIMHE----VTRVFLGASSVLSNGTTYSRVGTACVAMVA 591 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~----Vd~VivGAdaI~aNG~V~NKiGT~~lAlaA 591 (630)
|++|+|||+||||++||.+| +|+|.+.||+||||+|+|++|+|++ ||+||||||+|++||+++||+|||++|++|
T Consensus 2 ~k~~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~A 81 (191)
T 1w2w_B 2 PRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVIC 81 (191)
T ss_dssp CEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 68999999999999999875 7999999999999999999999998 999999999999999999999999999999
Q ss_pred HhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803 592 HAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL 628 (630)
Q Consensus 592 k~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl 628 (630)
|+||||||||||+|||++++++|..+.||+|||+||+
T Consensus 82 k~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~~~ev~ 118 (191)
T 1w2w_B 82 KQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFK 118 (191)
T ss_dssp HHHTCEEEEECCGGGBCSSCCSGGGCCCCBCCTHHHH
T ss_pred HHcCCCEEEecccceeeeccCCcceeecccCCHHHhc
Confidence 9999999999999999999999999999999999875
No 9
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.92 E-value=5.6e-25 Score=217.97 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=144.3
Q ss_pred CCceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHh-hh-cC--
Q 006803 336 KNRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVI-ND-YS-- 405 (630)
Q Consensus 336 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI-~d-~~-- 405 (630)
.+.|.|| +.||++++|+.|.++++++.+|++|. |+| |.++|++|++++++.- .+ ..
T Consensus 15 ~~~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~VRGAPaI--------------giaAA~glal~a~~~~~~~~~~~~ 80 (211)
T 1w2w_A 15 NVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAI--------------AIVGSLSVLTEVQLIKHNPTSDVA 80 (211)
T ss_dssp SCEEEEECTTTTTTCCCEEECCSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHHHHHHCTTSTGG
T ss_pred CCEEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCcccCchHH--------------HHHHHHHHHHHHHhccccCChhhc
Confidence 3479999 99999999999999999999999999 999 9999999999998753 11 10
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006803 406 TPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVR 485 (630)
Q Consensus 406 ~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~ 485 (630)
+-.......+|...|+..+++|.++|||+|||+|++++|+..+... .+.+++++.+++.++.|++|++ .+|+.|++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~L~~sRPTAVNL~~Al~r~~~~~~~~---~~~~~~~~~l~~~a~~i~~ed~-~~n~~IG~ 156 (211)
T 1w2w_A 81 TLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSS---SDLKAFDGSLYNYVCELIDEDL-ANNMKMGD 156 (211)
T ss_dssp GGSCTTCHHHHHHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0000012237889999999999999999999999999999988654 3678899999999999999976 78999999
Q ss_pred HHHhhc------c---CCCEEEeecCh--------HHHHHHHHHHHHcCCceE
Q 006803 486 HAATKV------R---DGDVLLTYGSS--------CVVEMILLYAHELGKQFR 521 (630)
Q Consensus 486 ~a~~~I------~---dgdvILT~g~S--------~tV~~vL~~A~e~gk~f~ 521 (630)
||+++| . +|++||||||+ +|++++|+.||++|+.|+
T Consensus 157 ~Ga~lI~~~~~~~~~~dg~~ILTHCNtG~LAT~g~GTALgvIr~a~~~Gk~~~ 209 (211)
T 1w2w_A 157 NGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKT 209 (211)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCeEEeECCCchHhhcCcchHHHHHHHHHHcCCccc
Confidence 999999 8 89999999999 699999999999998763
No 10
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=98.16 E-value=7.2e-06 Score=82.07 Aligned_cols=128 Identities=16% Similarity=0.072 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHc----CCc-eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHEL----GKQ-FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN 553 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~----gk~-f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds 553 (630)
..+.|++.|+++|++|++|.. +.++|+..++....+. +.+ ++| |+.| ...+.+|.+.||++.++-+
T Consensus 8 ~K~~IA~~Aa~~I~dg~~I~L-gsGST~~~~~~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~v~~l~~- 78 (227)
T 1uj6_A 8 YKKEAAHAAIAYVQDGMVVGL-GTGSTARYAVLELARRLREGELKGVVG-VPTS------RATEELAKREGIPLVDLPP- 78 (227)
T ss_dssp HHHHHHHHHHTTCCTTCEEEE-CCSHHHHHHHHHHHHHHHTTSSCSCEE-EESS------HHHHHHHHHTTCCBCCCCT-
T ss_pred HHHHHHHHHHHHCCCCCEEEE-cCCHHHHHHHHHHhhhhhhcCCCCEEE-ECCc------HHHHHHHHhCCCeEEEcCC-
Confidence 466899999999999999985 5556777777766443 224 776 4443 4566778888998877722
Q ss_pred hHHHHhccccEEEEcceeEecCCceecccchHHH--HHHHHhCCCcEEEecccccccccccCCCcccccccC
Q 006803 554 AVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACV--AMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGM 623 (630)
Q Consensus 554 Av~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~l--AlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrd 623 (630)
.++|+.|+|||.|-.++....-.|.+.+ +++++. ...|||+|+..||....- .-.+++|.-+
T Consensus 79 ------~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~-a~~~ivlaD~sK~~~~lg-~~~lPvEV~p 142 (227)
T 1uj6_A 79 ------EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERV-AKEFIVIADHTKKVPVLG-RGPVPVEIVP 142 (227)
T ss_dssp ------TCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHT-EEEEEEEEEGGGBCSSSC-SSCEEEEECS
T ss_pred ------CcCCEEEECCCccCccccEECCHHHHHHHHHHHHhc-cCCEEEEEEcchhccccC-CCceeEEECc
Confidence 3799999999999999855555566655 466653 349999999999998632 2346666543
No 11
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=97.82 E-value=4.8e-05 Score=75.77 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI 558 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 558 (630)
..+.|++.|+++|++|++|. .+.++|+..+++...+.+.+++|.|+-| ...+.+|.+.||++..+ . .
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~la~~L~~~~~~itv~VTnS------~~~a~~l~~~gi~vi~l--~----~ 72 (219)
T 1m0s_A 6 MKKLAAQAALQYVKADRIVG-VGSGSTVNCFIEALGTIKDKIQGAVAAS------KESEELLRKQGIEVFNA--N----D 72 (219)
T ss_dssp HHHHHHHHHGGGCCTTSEEE-ECCSHHHHHHHHHHHTTGGGSCEEEESS------HHHHHHHHHTTCCBCCG--G----G
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhccCCCEEEEECCh------HHHHHHHHhCCCeEEEe--C----c
Confidence 45689999999999999987 7888898888887754321577745554 34567777788887653 2 1
Q ss_pred hccccEEEEcceeEecCCceecccchHHHH--HHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 559 MHEVTRVFLGASSVLSNGTTYSRVGTACVA--MVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aNG~V~NKiGT~~lA--laAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
+.++|+.|+|||.|-.++++..-.|-..+- +++. ...-+||+|+..||....-..--+++|.
T Consensus 73 ~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~-~A~~~ivlaD~SK~~~~lg~~~~lPvEV 136 (219)
T 1m0s_A 73 VSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAA-LAKKFICIVDSSKQVDVLGSTFPLPVEV 136 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHH-HEEEEEEEEEGGGBCSSTTSSSCEEEEE
T ss_pred cccCCEEEECcCeECCCCCeecCHHHHHHHHHHHHH-hcCcEEEEEeCcHHhhccCCCCCEEEEE
Confidence 258999999999999876665543433332 3332 2338999999999987653233466665
No 12
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=97.79 E-value=0.00012 Score=73.46 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHc---CC--ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHEL---GK--QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN 553 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~---gk--~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds 553 (630)
..+.|++.|+++|++|++|. .+.++|+..++....+. +. +++| |+-| ...+.+|.+.||++..+ .
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~~a~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~vi~l--~ 75 (229)
T 1lk5_A 6 MKKIAAKEALKFIEDDMVIG-LGTGSTTAYFIKLLGEKLKRGEISDIVG-VPTS------YQAKLLAIEHDIPIASL--D 75 (229)
T ss_dssp HHHHHHHHHGGGCCTTCEEE-ECCSHHHHHHHHHHHHHHHTTSSCSCEE-EESS------HHHHHHHHHTTCCBCCG--G
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhhccCCCEEE-ECCc------HHHHHHHHhCCCeEEEe--C
Confidence 46689999999999999987 78888888888877543 21 5666 4433 34567777789887653 2
Q ss_pred hHHHHhccccEEEEcceeEecCCceecccchHHHH--HHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 554 AVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVA--MVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 554 Av~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lA--laAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
.+.++|+.|+|||.|-.++++..-.|-..+- +++ ....-|||+|+..||....-..--+++|.
T Consensus 76 ----~~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~-~~A~~~ivlaD~SK~~~~lg~~~~lPvEV 140 (229)
T 1lk5_A 76 ----QVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIE-YRAGTFIVLVDERKLVDYLCQKMPVPIEV 140 (229)
T ss_dssp ----GCSCEEEEEECCSEECTTCCEECCTTSCHHHHHHHH-HTEEEEEEEEEGGGBCSSTTSSCCEEEEE
T ss_pred ----CcccCCEEEECCCeECCCCCeecCHHHHHHHHHHHH-HhcCCeEEEEchhhhhhhcCCCCCEEEEE
Confidence 1247999999999999886665544444333 333 34458999999999987653233456665
No 13
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=97.78 E-value=7.6e-05 Score=75.57 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHh-hccCCCEEEeecChHHHHHHHHHHHHc---C-C-ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006803 478 LADKVIVRHAAT-KVRDGDVLLTYGSSCVVEMILLYAHEL---G-K-QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 478 ~A~~~Ia~~a~~-~I~dgdvILT~g~S~tV~~vL~~A~e~---g-k-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 551 (630)
...+.|++.|++ +|++|++|. .|..+|+..++....+. + . +++| |+-| ...+.+|.+.||++..+-
T Consensus 11 ~~K~~iA~~Aa~~~I~dg~~Ig-LgsGST~~~~~~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~v~~l~ 82 (244)
T 2f8m_A 11 SLKKIVAYKAVDEYVQSNMTIG-LGTGSTVFYVLERIDNLLKSGKLKDVVC-IPTS------IDTELKARKLGIPLTTLE 82 (244)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEE-ECCSTTTHHHHHHHHHHHHHTSSCSCEE-EESS------HHHHHHHHHHTCCBCCCC
T ss_pred HHHHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhccCCCCEEE-ECCc------HHHHHHHHHCCCeEEEec
Confidence 467789999999 999999987 78888888888776543 2 1 5665 4333 345567777799877662
Q ss_pred chhHHHHhccccEEEEcceeEecCCceecccchHHHHH-HHHhCCCcEEEeccccccc-ccccCCCccccccc
Q 006803 552 INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAM-VAHAFRVPVLICCEAYKFH-ERVQLDSICSNELG 622 (630)
Q Consensus 552 DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAl-aAk~~~VPV~V~aet~Kf~-~r~~~ds~i~nElr 622 (630)
.+.++|+.|+|||.|-.+++++---|-..+-- +.-....-|||+++..||. ++.-..--+++|.-
T Consensus 83 ------~~~~iD~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~~~plPvEV~ 149 (244)
T 2f8m_A 83 ------KHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGMTGAVPIEIL 149 (244)
T ss_dssp ------SSCCBSEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTCSSCEEEEEC
T ss_pred ------ccCcCCEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCCCCCcEEEEEc
Confidence 34489999999999999977766666555544 2445677899999999999 76432335666653
No 14
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=97.65 E-value=0.00014 Score=72.86 Aligned_cols=130 Identities=16% Similarity=0.112 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH
Q 006803 478 LADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY 557 (630)
Q Consensus 478 ~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~ 557 (630)
...+.|++.|+++|++|++|. .|.++|+..++....+..+++++.|+-| ...+..|.+.||++..+-+
T Consensus 11 ~~K~~iA~~A~~~V~~g~~Ig-lgsGST~~~~i~~L~~~~~~itv~VtnS------~~~a~~l~~~gi~l~~l~~----- 78 (224)
T 3kwm_A 11 ELKKLAATEAAKSITTEITLG-VGTGSTVGFLIEELVNYRDKIKTVVSSS------EDSTRKLKALGFDVVDLNY----- 78 (224)
T ss_dssp HHHHHHHHHHHTTCCSSEEEE-ECCSHHHHHHHHHGGGCTTTEEEEEESC------HHHHHHHHHTTCCBCCHHH-----
T ss_pred HHHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHhhcCceEEEECCc------HHHHHHHHHcCCeEEecCc-----
Confidence 346688999999999998765 4788888888888765545777756655 2445778888998765422
Q ss_pred HhccccEEEEcceeEecCCceecccchHHH-HHHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 558 IMHEVTRVFLGASSVLSNGTTYSRVGTACV-AMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 558 iM~~Vd~VivGAdaI~aNG~V~NKiGT~~l-AlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
+.++|+.|.|||.|-.++.++---|...+ --+......-|||+++..||.++.- .--+++|.
T Consensus 79 -~~~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg-~~plPvEV 141 (224)
T 3kwm_A 79 -AGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG-NFPLPIEV 141 (224)
T ss_dssp -HCSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBC-SSCEEEEE
T ss_pred -cccccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcC-CCCeEEEE
Confidence 25899999999999999877664444332 1222234567899999999997653 23355554
No 15
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=97.36 E-value=0.00064 Score=69.25 Aligned_cols=128 Identities=17% Similarity=0.079 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHH---cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHE---LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV 555 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e---~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv 555 (630)
..+.|++.|+++|++|++|. .|..+|+..++....+ .|.++.+ |+-| ...+.+|.+.||++..+-+
T Consensus 27 ~K~~iA~~A~~~V~dg~vIg-LGsGST~~~~i~~L~~~~~~gl~Itv-VttS------~~ta~~l~~~GI~l~~l~~--- 95 (255)
T 3hhe_A 27 LKKMAALKALEFVEDDMRLG-IGSGSTVNEFIPLLGERVANGLRVTC-VATS------QYSEQLCHKFGVPISTLEK--- 95 (255)
T ss_dssp HHHHHHHHHHTTCCTTEEEE-ECCSHHHHHHHHHHHHHHHTTCCEEE-EESS------HHHHHHHHHTTCCBCCTTT---
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhccCCcEEE-EcCC------HHHHHHHHHcCCcEEeccc---
Confidence 35678899999999998765 5788888888877544 2334443 3322 3456778888998765432
Q ss_pred HHHhccccEEEEcceeEecCCceecccchHH-HHHHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 556 SYIMHEVTRVFLGASSVLSNGTTYSRVGTAC-VAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 556 ~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~-lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
+.++|+.|.|||-|-.+..++---|... --=+......-|||+++..||.++.- .--+++|.
T Consensus 96 ---~~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG-~~plPVEV 158 (255)
T 3hhe_A 96 ---IPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG-AFALPIEV 158 (255)
T ss_dssp ---CCSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSC-SSCEEEEE
T ss_pred ---ccccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhC-CCCeEEEE
Confidence 3479999999999999877665333322 21222334567999999999998653 22356664
No 16
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=97.35 E-value=0.00049 Score=68.89 Aligned_cols=127 Identities=18% Similarity=0.108 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHc----CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHEL----GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA 554 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~----gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA 554 (630)
..+.|++.|+++|++|++|.- |..+|+..++....+. +.++++ |+-| ...+..|.+.||++..+-+
T Consensus 4 ~K~~iA~~A~~~V~dg~vIgL-GsGST~~~~i~~L~~~~~~~~~~i~~-VttS------~~t~~~l~~~Gi~l~~l~~-- 73 (225)
T 3l7o_A 4 LKKIAGVRAAQYVEDGMIVGL-GTGSTAYYFVEEVGRRVQEEGLQVIG-VTTS------SRTTAQAQALGIPLKSIDE-- 73 (225)
T ss_dssp HHHHHHHHHHTTCCTTCEEEE-CCSTTHHHHHHHHHHHHHHHCCCCEE-EESS------HHHHHHHHHHTCCBCCGGG--
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHHhhhhcCCCEEE-EcCC------HHHHHHHhccCceEEecCc--
Confidence 356789999999999997664 7777777777765543 556665 3333 2345667778998865432
Q ss_pred HHHHhccccEEEEcceeEecCCceecccchHHH--HHHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 555 VSYIMHEVTRVFLGASSVLSNGTTYSRVGTACV--AMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 555 v~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~l--AlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
..++|+.|.|||-|-.+..++---|...+ -++| ....-|||+++..||.++.- .--+++|.
T Consensus 74 ----~~~iD~a~dGADevd~~~~liKGgG~al~rEKiva-~~A~~~iviaD~sK~~~~Lg-~~plPvEV 136 (225)
T 3l7o_A 74 ----VDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVG-TLTKDYIWVVDESKMVDTLG-AFRLPVEV 136 (225)
T ss_dssp ----SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHH-HTEEEEEEEEEGGGBCSSSC-SSCEEEEE
T ss_pred ----ccccCEEEEcCCccCcccCeecCchhhhHHHHHHH-HhCCeEEEEEecccchhhcC-CCCEEEEE
Confidence 35899999999999999887664444333 2222 23457899999999997653 22356664
No 17
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=97.35 E-value=4.3e-05 Score=76.13 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI 558 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 558 (630)
..+.|++.|+++|++|++|. .+.++|+..++....+.+.+++|.|+-|-+ .+.+|.+.||++..+ +.
T Consensus 6 ~K~~IA~~Aa~lI~dg~~I~-LdsGST~~~la~~L~~~~~~itv~VTnS~~------~a~~l~~~gi~vi~l--~~---- 72 (219)
T 1o8b_A 6 LKKAVGWAALQYVQPGTIVG-VGTGSTAAHFIDALGTMKGQIEGAVSSSDA------STEKLKSLGIHVFDL--NE---- 72 (219)
T ss_dssp -----------------CEE-ECCSCC---------------CCEEESCCC------------------CCG--GG----
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhccCCCEEEEECCcHH------HHHHHHhCCCeEEEe--Cc----
Confidence 45679999999999999987 677788888887764432156664665543 334555567765443 22
Q ss_pred hccccEEEEcceeEecCCceecccchHHHH--HHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 559 MHEVTRVFLGASSVLSNGTTYSRVGTACVA--MVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aNG~V~NKiGT~~lA--laAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
+.++|+.|+|||.|-.++.+..--|-..+- +++. ...-+|++|+..||....- .--+++|.
T Consensus 73 ~~~~D~af~Gadgid~~~~~~~~~~~a~~kekiv~~-~A~~~ivlaD~SK~~~~lg-~~~lPvEV 135 (219)
T 1o8b_A 73 VDSLGIYVDGADEINGHMQMIKGGGAALTREKIIAS-VAEKFICIADASKQVDILG-KFPLPVEV 135 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHH-HEEEEEEEEEGGGBCSSBT-SSCEEEEE
T ss_pred cCcCCEEEECcceECCCCCeecCHHHHHHHHHHHHH-hcCcEEEEEeCcccccccC-CCcEEEEE
Confidence 258999999999999887766433433333 3332 2337999999999987643 22456665
No 18
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00042 Score=70.86 Aligned_cols=130 Identities=14% Similarity=0.102 Sum_probs=89.4
Q ss_pred HHHHHHHHHHh-hcc--CCCEEEeecChHHHHHHHHHHHHc---CC------ceEEEEcCCCCCchHHHHHHHHHhCCCc
Q 006803 479 ADKVIVRHAAT-KVR--DGDVLLTYGSSCVVEMILLYAHEL---GK------QFRVVVVDSRPKHEGQALLRRLLAKGLS 546 (630)
Q Consensus 479 A~~~Ia~~a~~-~I~--dgdvILT~g~S~tV~~vL~~A~e~---gk------~f~ViV~ESRP~~eG~~La~eL~~~GI~ 546 (630)
..+.|++.|++ +|. +|++|. .+.++|+..+++...+. +. +++| |+-| ...+.+|.+.||+
T Consensus 21 ~K~~IA~~Aa~~~I~~~dg~~Ig-LgsGST~~~~a~~L~~~~~~~~l~~~~~~itv-VTnS------~~~a~~l~~~gi~ 92 (264)
T 1xtz_A 21 AKRAAAYRAVDENLKFDDHKIIG-IGSGSTVVYVAERIGQYLHDPKFYEVASKFIC-IPTG------FQSRNLILDNKLQ 92 (264)
T ss_dssp HHHHHHHHHHHHHCCTTTCCEEE-ECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEE-EESS------HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhccCCCCCCEEE-EcChHHHHHHHHHHhHhhhccccccccCCEEE-ECCc------HHHHHHHHHCCCe
Confidence 46689999998 999 999987 77888888888776543 22 3665 4333 3456777788987
Q ss_pred EEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHH-HHHhCCCcEEEeccccccc-ccccCCC--ccccccc
Q 006803 547 CTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAM-VAHAFRVPVLICCEAYKFH-ERVQLDS--ICSNELG 622 (630)
Q Consensus 547 vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAl-aAk~~~VPV~V~aet~Kf~-~r~~~ds--~i~nElr 622 (630)
+.++ . .+.++|+.|+|||.|-.++.++.--|-..+-- +......-|||+++..||. ++.-..- -+++|.-
T Consensus 93 v~~l--~----~~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~Lg~~~~~plPVEV~ 166 (264)
T 1xtz_A 93 LGSI--E----QYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIV 166 (264)
T ss_dssp ECCT--T----TCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSSBTSSCCSCEEEEEC
T ss_pred EEEe--h----hcCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEccccccccccccCCCCEeEEEC
Confidence 6555 2 22589999999999998876665555444433 2334556899999999999 5432111 3666653
No 19
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=97.24 E-value=0.002 Score=64.51 Aligned_cols=128 Identities=12% Similarity=0.042 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHc----CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHEL----GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA 554 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~----gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA 554 (630)
..+.|++.|+++|++|++|.. +.++|+..++....+. +.+++| |+-| ...+..|.+.||++.-+ +.
T Consensus 6 ~K~~iA~~A~~~I~~g~~Igl-gsGST~~~~~~~L~~~~~~~~l~itv-VtnS------~~~a~~l~~~gi~v~~l--~~ 75 (226)
T 2pjm_A 6 LKLKVAKEAVKLVKDGMVIGL-GTGSTAALFIRELGNRIREEELTVFG-IPTS------FEAKMLAMQYEIPLVTL--DE 75 (226)
T ss_dssp HHHHHHHHHGGGCCTTCEEEE-CCSHHHHHHHHHHHHHHHHHTCCCEE-EESS------HHHHHHHHHTTCCBCCT--TT
T ss_pred HHHHHHHHHHHHCCCCCEEEE-CCCHHHHHHHHHHHhhhhccCCcEEE-EeCc------HHHHHHHHhcCCeEEee--cc
Confidence 456899999999999987764 7777877777765442 335553 3332 34557788899986632 21
Q ss_pred HHHHhccccEEEEcceeEecC-CceecccchHHH-HHHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 555 VSYIMHEVTRVFLGASSVLSN-GTTYSRVGTACV-AMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 555 v~~iM~~Vd~VivGAdaI~aN-G~V~NKiGT~~l-AlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
+. +|+.|.|||.|-.+ +.++---|...+ --+-.....-|||+++..||.++.-..--+++|.
T Consensus 76 ----~~-iD~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~Lg~~~~lPvEV 139 (226)
T 2pjm_A 76 ----YD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPVEV 139 (226)
T ss_dssp ----CC-CSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEEEE
T ss_pred ----cc-CCEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhccCCCCCEEEEE
Confidence 33 99999999999999 766554443222 1111223457899999999998653223456664
No 20
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=96.66 E-value=0.0044 Score=62.56 Aligned_cols=124 Identities=21% Similarity=0.195 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhccC----CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH
Q 006803 480 DKVIVRHAATKVRD----GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV 555 (630)
Q Consensus 480 ~~~Ia~~a~~~I~d----gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv 555 (630)
.+.|++.|+++|++ |++|- .|..+|+..++....+..++++.+|.-| ...+..|.+.||++..+-+
T Consensus 15 K~~aA~~A~~~V~d~~~~g~vIG-LGtGST~~~~i~~L~~~~~~i~~~V~tS------~~t~~~~~~~Gi~l~~l~~--- 84 (239)
T 3uw1_A 15 KRLVGEAAARYVTDNVPQGAVIG-VGTGSTANCFIDALAAVKDRYRGAVSSS------VATTERLKSHGIRVFDLNE--- 84 (239)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEE-ECCSHHHHHHHHHHHTTGGGSCEEEESS------HHHHHHHHHTTCCBCCGGG---
T ss_pred HHHHHHHHHHHhhccCcCCCEEE-ECccHHHHHHHHHHHhhhccceEEeCCc------HHHHHHHHHcCCcEEeccc---
Confidence 45677777788877 88655 5888899989888766444565444433 3456778889998864322
Q ss_pred HHHhccccEEEEcceeEecCCceecccchH-----HHHHHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 556 SYIMHEVTRVFLGASSVLSNGTTYSRVGTA-----CVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 556 ~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~-----~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
..++|+.|.|||-|-.|+.++--=|.. .+|-+| .-|||+++..||.++.- .--+++|.
T Consensus 85 ---~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A----~~~ivIaD~sK~v~~Lg-~~plPVEV 147 (239)
T 3uw1_A 85 ---IESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVA----ETFVCIADASKRVAMLG-QFPLPVEV 147 (239)
T ss_dssp ---CSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHE----EEEEEEEEGGGBCSSBT-SSCEEEEE
T ss_pred ---ccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhC----CcEEEEEecchhhhhcC-CCCeEEEE
Confidence 257999999999999998776633322 233333 46899999999987653 12355554
No 21
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=92.99 E-value=0.3 Score=48.96 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcC--CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH
Q 006803 479 ADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELG--KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS 556 (630)
Q Consensus 479 A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~g--k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~ 556 (630)
..+..++.|+++|++|. |+=.|..+||..++....+.. ..+.+.++-| ..+....+.+.||+++-+-+
T Consensus 7 ~K~~aa~~A~~~V~~gm-vvGlGTGSTv~~~i~~L~~~~~~~~l~i~~V~t-----S~~t~~~a~~~Gi~l~~l~~---- 76 (228)
T 4gmk_A 7 LKQLVGTKAVEWIKDGM-IVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTT-----SIRTAEQAKSLGIVIKDIDE---- 76 (228)
T ss_dssp HHHHHHHHHGGGCCTTC-EEEECCSHHHHHHHHHHHHHHHHHCCCCEEEES-----SHHHHHHHHHTTCCBCCGGG----
T ss_pred HHHHHHHHHHHhCCCCC-EEEECchHHHHHHHHHHHHHHhhcCCcEEEEeC-----cHHHHHHHHHcCCceeChHH----
Confidence 45667888999999987 566788899998888765421 1223443333 12344667778999876554
Q ss_pred HHhccccEEEEcceeEecCCceecccchH-----HHHHHHHhCCCcEEEecccccccccccCCC-cccccc
Q 006803 557 YIMHEVTRVFLGASSVLSNGTTYSRVGTA-----CVAMVAHAFRVPVLICCEAYKFHERVQLDS-ICSNEL 621 (630)
Q Consensus 557 ~iM~~Vd~VivGAdaI~aNG~V~NKiGT~-----~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds-~i~nEl 621 (630)
..++|..|=|||-|-.|..++--=|.+ .+|.+|++ |+|+++..|+.++. +. .+++|.
T Consensus 77 --~~~iD~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~----fI~IaD~sK~v~~L--G~fplPVEV 139 (228)
T 4gmk_A 77 --VDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNK----NMWIVDESKMVDDL--GQFPLPVEV 139 (228)
T ss_dssp --SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEE----EEEEEEGGGBCSSS--CSSCEEEEE
T ss_pred --CCccceEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhh----eEEEeccccccCcc--CCeeEEEEE
Confidence 357899999999999998877555533 35555554 79999999998764 32 345554
No 22
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=88.83 E-value=1.6 Score=43.60 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcC--CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH
Q 006803 480 DKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELG--KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY 557 (630)
Q Consensus 480 ~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~g--k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~ 557 (630)
.+..++.|+++|++|. |+=.|..+||..+|....+.. ..+.|+.+.|. .+....+.+.||+++.+.+
T Consensus 7 K~~aa~~A~~~V~~gm-vvGlGTGSTv~~~I~~L~~~~~~~~l~i~~v~tS-----~~t~~~a~~~gi~l~~l~~----- 75 (226)
T 3ixq_A 7 KLKVAKEAVKLVKDGM-VIGLGTGSTAALFIRELGNRIREEELTVFGIPTS-----FEAKMLAMQYEIPLVTLDE----- 75 (226)
T ss_dssp HHHHHHHHGGGCCTTC-EEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESS-----HHHHHHHHHTTCCBCCTTT-----
T ss_pred HHHHHHHHHHhCCCCC-EEEeCcHHHHHHHHHHHHHhhhhcCCeeEeeccc-----HHHHHHHHhcCCCcccccc-----
Confidence 4567788999999987 557888999998888765421 12345555442 2233556678999765533
Q ss_pred HhccccEEEEcceeEec-CCceecccch-H----HHHHHHHhCCCcEEEecccccccccccCCCcccccc
Q 006803 558 IMHEVTRVFLGASSVLS-NGTTYSRVGT-A----CVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621 (630)
Q Consensus 558 iM~~Vd~VivGAdaI~a-NG~V~NKiGT-~----~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nEl 621 (630)
. .+|..|=|||-|-. |=.++--=|. + .+|.+ ..-|+|+++..|+.++.-..--+++|.
T Consensus 76 -~-~iDl~iDGADEvd~~~l~lIKGGGgAl~rEKivA~~----a~~~I~I~D~sK~v~~LG~~fplPVEV 139 (226)
T 3ixq_A 76 -Y-DVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYN----ANEFVVLVDESKLVKKLGEKFPIPVEV 139 (226)
T ss_dssp -C-CCSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHH----SSEEEEEEEGGGEESSTTSSSCEEEEE
T ss_pred -c-cccEEEeCcchhccccceEEecchHHHHHHHHHHHH----hhheEEEeccccchhhcCCCCCccEEE
Confidence 1 38999999999974 3233332232 2 23333 456799999999987542212355554
No 23
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=83.12 E-value=8.1 Score=31.95 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=63.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHHhccccEEEEcce
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivGAd 570 (630)
+..|+..|....=..++..+.+.| .++|++++-.+. -+..+...|+....... ..+..++..+|.||..+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~- 77 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHDLA-----ALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAA- 77 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESCHH-----HHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECS-
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCCHH-----HHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECC-
Confidence 457888888444455566666655 367888776432 12344466776543321 34556677888888765
Q ss_pred eEecCCceecccchHHHHHHHHhCCCcEEEeccccccc
Q 006803 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFH 608 (630)
Q Consensus 571 aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~ 608 (630)
| ...+..++..|...+++++.++....+.
T Consensus 78 -----~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 106 (118)
T 3ic5_A 78 -----P----FFLTPIIAKAAKAAGAHYFDLTEDVAAT 106 (118)
T ss_dssp -----C----GGGHHHHHHHHHHTTCEEECCCSCHHHH
T ss_pred -----C----chhhHHHHHHHHHhCCCEEEecCcHHHH
Confidence 1 2246788899999999999887665543
No 24
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=82.63 E-value=3.8 Score=41.23 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=65.3
Q ss_pred CCEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCC--CchHHHHHHHHHhCCCcEEEEcc---hhHHHHhccccEEEE
Q 006803 494 GDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRP--KHEGQALLRRLLAKGLSCTYTHI---NAVSYIMHEVTRVFL 567 (630)
Q Consensus 494 gdvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP--~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~Viv 567 (630)
+.+||..|-++.+=. ++..+.+.| .+|+++.-.+ ..+-......|...|+.+..... ..+..++.+.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~----- 82 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAH--RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEH----- 82 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHT-----
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC--CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhC-----
Confidence 357999998886654 444445566 5566665444 22333344677778886654432 3455566621
Q ss_pred cceeEecCCceecccchHHHHHHHHhCC-CcEEEec
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFR-VPVLICC 602 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~-VPV~V~a 602 (630)
|+|.|+.+.+..|-.|+..+.-+|+..+ ++.+|.+
T Consensus 83 ~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S 118 (346)
T 3i6i_A 83 EIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPS 118 (346)
T ss_dssp TCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECS
T ss_pred CCCEEEECCchhhHHHHHHHHHHHHHcCCceEEeec
Confidence 4455555556679999999999999999 9998863
No 25
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=81.99 E-value=3.2 Score=39.33 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=60.5
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhccccEEEEcc
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMHEVTRVFLGA 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~~Vd~VivGA 569 (630)
.|.+||..|-|+-+= .+.+.+.++| .+|+++.-++.. ..+|...|+...+..|-. +...+..+|.||.-|
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~~-----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~a 92 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNEEQ-----GPELRERGASDIVVANLEEDFSHAFASIDAVVFAA 92 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSGGG-----HHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECChHH-----HHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECC
Confidence 367899999888664 4455555655 577777544432 234555677223444533 223334455555433
Q ss_pred eeEecCC----ceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 570 SSVLSNG----TTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 570 daI~aNG----~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
-....+. --+|-.||..+.-+|+..++.-+|...++
T Consensus 93 g~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 132 (236)
T 3e8x_A 93 GSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV 132 (236)
T ss_dssp CCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred CCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 2110000 01277899999999999898877776664
No 26
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=79.71 E-value=14 Score=31.73 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=35.6
Q ss_pred HHHHhCCCcE---EEE-c-chhHHHHh---c--cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEe
Q 006803 538 RRLLAKGLSC---TYT-H-INAVSYIM---H--EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 538 ~eL~~~GI~v---TlI-~-DsAv~~iM---~--~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ 601 (630)
..+.+.|+++ +.. . ......++ . .+|+|++|++. .|.+-. -.|+..-.+ .++-++||+|+
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~---~~~~~~~~~Gs~~~~v-l~~~~~pVlvV 147 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQG---TNGDKSLLLGSVAQRV-AGSAHCPVLVV 147 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSC---TTCCSCCCCCHHHHHH-HHHCSSCEEEC
T ss_pred HHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCC---CccccceeeccHHHHH-HhhCCCCEEEC
Confidence 4456689887 432 2 23333333 3 69999999975 233333 246654444 55667999985
No 27
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=78.82 E-value=18 Score=37.02 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=57.7
Q ss_pred cCCCEEEeecChHHHHHHHHHHH--HcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHHh-
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAH--ELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYIM- 559 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~--e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM- 559 (630)
....+++|-|.+..+..++..+. +.|...+|++. .|.+.+...+ +...|+.+..+... .+-..+
T Consensus 104 ~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~--~p~~~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~ 179 (437)
T 3g0t_A 104 PARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFI--DPGFNLNKLQ--CRILGQKFESFDLFEYRGEKLREKLESYLQ 179 (437)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEE--ESCCHHHHHH--HHHHTCCCEEEEGGGGCTTHHHHHHHHHHT
T ss_pred CcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEe--CCCcHhHHHH--HHHcCCEEEEEeecCCCCccCHHHHHHHHh
Confidence 34577888776666666666554 44442256665 4677665444 33457777776431 233333
Q ss_pred -ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 560 -HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 560 -~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.++..|++ +.---..|.++..---..|+-+|++||+.++|
T Consensus 180 ~~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 180 TGQFCSIIY-SNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp TTCCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCceEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 24566655 22212233333332233467789999998887
No 28
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=78.60 E-value=6.1 Score=39.07 Aligned_cols=109 Identities=12% Similarity=0.055 Sum_probs=69.9
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCC------------------chHHHHHHHHHhC-
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPK------------------HEGQALLRRLLAK- 543 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~------------------~eG~~La~eL~~~- 543 (630)
++..+.+.+. +..||..|..++-..++..+...|.. +++++|.... ..-..++..|.+.
T Consensus 21 ~g~~~q~~l~-~~~VlVvG~Gg~G~~va~~La~~Gv~-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 21 FDFDGQEALK-DSRVLIVGLGGLGCAASQYLASAGVG-NLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp THHHHHHHHH-HCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHh-CCeEEEEeeCHHHHHHHHHHHHcCCC-eEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 3444445554 46899999998877777777777753 4555554431 1223445666653
Q ss_pred -CCcEEEEc----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 544 -GLSCTYTH----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 544 -GI~vTlI~----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
++.++.+. +..+..++..+|.||.+.|..- --+.+.-.|+.+++|++.++
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVA---------VRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHH---------HHHHHHHHHHHHTCCEEEEE
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEee
Confidence 56666543 2344556788999998876542 23677788888999998763
No 29
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=77.76 E-value=18 Score=31.05 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=35.1
Q ss_pred HHHHhCCC-cEEEEc--chhHHH----Hh--ccccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEe
Q 006803 538 RRLLAKGL-SCTYTH--INAVSY----IM--HEVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 538 ~eL~~~GI-~vTlI~--DsAv~~----iM--~~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ 601 (630)
..+.+.|+ +++... ...... +. ..+|+||+|++.- |.+-. -.|+..-.+ .++-++||+|+
T Consensus 76 ~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvV 145 (146)
T 3s3t_A 76 QFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGT---NSPHRVAVGSTTSYV-VDHAPCNVIVI 145 (146)
T ss_dssp HHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCS---SCTTTCSSCHHHHHH-HHHCSSEEEEE
T ss_pred HHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCC---CCcceEEEcchHHHH-hccCCCCEEEe
Confidence 34455788 765443 222222 33 2699999999752 22222 256654444 45667999986
No 30
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=74.14 E-value=22 Score=32.43 Aligned_cols=37 Identities=0% Similarity=-0.183 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
+-..+++.+.+.|+++..||++.-+ +.+.+|.+|.-.
T Consensus 97 ~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~ 133 (180)
T 1jeo_A 97 SVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLE 133 (180)
T ss_dssp HHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECC
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeC
Confidence 3455568888999999999998777 777899887644
No 31
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=73.82 E-value=20 Score=35.78 Aligned_cols=101 Identities=5% Similarity=0.113 Sum_probs=56.1
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch------------hHHHHhc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN------------AVSYIMH 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds------------Av~~iM~ 560 (630)
...+++|-|.+..+..++..+.+.| -+|++.+ |.+.|...+ +...|+.+..+... .+-..+.
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 163 (391)
T 4dq6_A 90 SEWLIYSPGVIPAISLLINELTKAN--DKIMIQE--PVYSPFNSV--VKNNNRELIISPLQKLENGNYIMDYEDIENKIK 163 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTT--CEEEECS--SCCTHHHHH--HHHTTCEEEECCCEECTTSCEECCHHHHHHHCT
T ss_pred HHHeEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCCHHHHHH--HHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh
Confidence 3467777776666666666553333 3566544 677665443 33567777665422 3334444
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+ .++|+=.+.-...|.++..---..|+-+|+.|++.+++
T Consensus 164 ~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (391)
T 4dq6_A 164 D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIIS 202 (391)
T ss_dssp T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEe
Confidence 4 33333222222344444444445677789999998887
No 32
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=73.26 E-value=19 Score=35.84 Aligned_cols=109 Identities=13% Similarity=0.054 Sum_probs=65.4
Q ss_pred CCCEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-------CCCcEEEEcc----hhHHHHhc
Q 006803 493 DGDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-------KGLSCTYTHI----NAVSYIMH 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-------~GI~vTlI~D----sAv~~iM~ 560 (630)
.+.+||..|-++.+=. ++..+.++| .+|+++.-++...-.. ...|.. .++.+.. .| ..+..++.
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN--QVVIGLDNFSTGHQYN-LDEVKTLVSTEQWSRFCFIE-GDIRDLTTCEQVMK 99 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHH-HHHHHHTSCHHHHTTEEEEE-CCTTCHHHHHHHTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCCCchhh-hhhhhhccccccCCceEEEE-ccCCCHHHHHHHhc
Confidence 4678999998887654 444455555 6777776555432222 233333 3444332 23 34566777
Q ss_pred cccEEEEcceeEecCC--------ceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 561 EVTRVFLGASSVLSNG--------TTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG--------~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.+|.||--|-....+. .-.|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 100 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~ 152 (351)
T 3ruf_A 100 GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASS 152 (351)
T ss_dssp TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecH
Confidence 7887776553211000 13578899999999999998766665543
No 33
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=73.12 E-value=39 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=24.1
Q ss_pred cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+|+|++|++.- |.+-. -.|+..-.+ .++-++||+|+
T Consensus 99 ~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvv 136 (137)
T 2z08_A 99 KADLIVMGTRGL---GALGSLFLGSQSQRV-VAEAPCPVLLV 136 (137)
T ss_dssp TCSEEEEESSCT---TCCSCSSSCHHHHHH-HHHCSSCEEEE
T ss_pred CCCEEEECCCCC---chhhhhhhccHHHHH-HhcCCCCEEEe
Confidence 699999999852 22221 256554444 45568999986
No 34
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=72.56 E-value=5.5 Score=43.52 Aligned_cols=106 Identities=8% Similarity=0.095 Sum_probs=49.0
Q ss_pred HHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH----------
Q 006803 486 HAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV---------- 555 (630)
Q Consensus 486 ~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv---------- 555 (630)
.+-..|+.||+|+..|....+..+..........-+|+|+-. ..-|..++++|.+.|+++++|..+.-
T Consensus 315 ~~~~~l~~GD~L~v~g~~~~l~~~~~~~~~~~~~~~viIiG~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~ 392 (565)
T 4gx0_A 315 QRETVLTEQSLLVLAGTKSQLAALEYLIGEAPEDELIFIIGH--GRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVY 392 (565)
T ss_dssp --------------------------------CCCCEEEECC--SHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEE
T ss_pred CCCcEeCCCCEEEEEeCHHHHHHHHHHhcCCCCCCCEEEECC--CHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEE
Confidence 445677889999999988876665544322212256777765 45589999999999999999974321
Q ss_pred ----------HHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 556 ----------SYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 556 ----------~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
..-+.++|.||+..+. --=+..+++.||..+.+..|++
T Consensus 393 gD~t~~~~L~~agi~~ad~vi~~~~~---------d~~ni~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 393 GDATVGQTLRQAGIDRASGIIVTTND---------DSTNIFLTLACRHLHSHIRIVA 440 (565)
T ss_dssp SCSSSSTHHHHHTTTSCSEEEECCSC---------HHHHHHHHHHHHHHCSSSEEEE
T ss_pred eCCCCHHHHHhcCccccCEEEEECCC---------chHHHHHHHHHHHHCCCCEEEE
Confidence 1113356766665432 2345778899999987644443
No 35
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=72.29 E-value=32 Score=29.33 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=24.6
Q ss_pred cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+|++++|++. +| +-. -.|+..- -+.++-++||+|+
T Consensus 106 ~~dliV~G~~~---~~-~~~~~~Gs~~~-~v~~~~~~pVlvv 142 (143)
T 3fdx_A 106 PADLVIIASHR---PD-ITTYLLGSNAA-AVVRHAECSVLVV 142 (143)
T ss_dssp TCSEEEEESSC---TT-CCSCSSCHHHH-HHHHHCSSEEEEE
T ss_pred CCCEEEEeCCC---CC-CeeeeeccHHH-HHHHhCCCCEEEe
Confidence 69999999984 33 322 3566544 4456678999986
No 36
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=72.28 E-value=52 Score=29.16 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=57.0
Q ss_pred CEEEeecC-hHHHHHHHHHHH----HcCCceEEE-EcCCCCCc------hHHHH----HHHHHhCCCcEEE---Ecc-hh
Q 006803 495 DVLLTYGS-SCVVEMILLYAH----ELGKQFRVV-VVDSRPKH------EGQAL----LRRLLAKGLSCTY---THI-NA 554 (630)
Q Consensus 495 dvILT~g~-S~tV~~vL~~A~----e~gk~f~Vi-V~ESRP~~------eG~~L----a~eL~~~GI~vTl---I~D-sA 554 (630)
.+++-+.. |......|..|. ..+..++++ |.+..+.. ++... ...|.+.|+++.+ +.. ..
T Consensus 26 ~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~ 105 (155)
T 3dlo_A 26 PIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEP 105 (155)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCH
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCH
Confidence 34555677 775555555443 346666644 54432211 12222 2456678998765 322 22
Q ss_pred HHHH---hc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 555 VSYI---MH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 555 v~~i---M~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.-.+ .. .+|+||+|+..--.-+.+ -.|+..- -+.++-.+||+|+
T Consensus 106 ~~~I~~~a~~~~~DLIV~G~~g~~~~~~~--~lGSv~~-~vl~~a~~PVLvV 154 (155)
T 3dlo_A 106 PDDIVDFADEVDAIAIVIGIRKRSPTGKL--IFGSVAR-DVILKANKPVICI 154 (155)
T ss_dssp HHHHHHHHHHTTCSEEEEECCEECTTSCE--ECCHHHH-HHHHHCSSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCE--EeccHHH-HHHHhCCCCEEEe
Confidence 2333 33 699999999875222221 2565544 4455778999986
No 37
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=72.18 E-value=11 Score=37.57 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=26.7
Q ss_pred HHHHhhccCCCEEEeecCh--HHHHHHHHHHHHcC-CceEEEEc
Q 006803 485 RHAATKVRDGDVLLTYGSS--CVVEMILLYAHELG-KQFRVVVV 525 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S--~tV~~vL~~A~e~g-k~f~ViV~ 525 (630)
+.|+.+|+||++|++.|+. ++-..++....+++ +++++|-.
T Consensus 12 ~eAv~~IkdG~tV~~gGf~~~g~P~~li~aL~~~~~kdLtli~~ 55 (235)
T 3rrl_A 12 DKALSALKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSN 55 (235)
T ss_dssp HHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHHTCCSEEEECS
T ss_pred HHHHhhCCCCCEEEECCcCccCCHHHHHHHHHhcCCCcEEEEEc
Confidence 4467789999999998853 33344444444444 56777754
No 38
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=71.80 E-value=24 Score=35.45 Aligned_cols=102 Identities=19% Similarity=0.149 Sum_probs=56.0
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-------hHHHHhc-ccc
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-------AVSYIMH-EVT 563 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~-~Vd 563 (630)
....+++|-|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+.+..+... -+..+-. ++.
T Consensus 90 ~~~~v~~t~g~~~al~~~~~~l~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 163 (391)
T 3h14_A 90 DPGRVVITPGSSGGFLLAFTALFDSG--DRVGIGA--PGYPSYR--QILRALGLVPVDLPTAPENRLQPVPADFAGLDLA 163 (391)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHH--HHHHHTTCEEEEEECCGGGTTSCCHHHHTTSCCS
T ss_pred CHHHEEEecChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHhcCCe
Confidence 34567888776666666665553334 3555543 6666654 3344578888777532 1222222 345
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|++- ..--..|.++..---..|+-+|+.|++.+++
T Consensus 164 ~v~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 164 GLMVA-SPANPTGTMLDHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 55443 1112234333333345577788999998876
No 39
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=71.45 E-value=6.6 Score=36.67 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=58.6
Q ss_pred EEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE--cc--hhHHHHhccccEEEEcce
Q 006803 496 VLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT--HI--NAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 496 vILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D--sAv~~iM~~Vd~VivGAd 570 (630)
+||..|-++.+= .+++.+.++| .+|+++.-++...- .+ .++.+... +| ..+..++..+|.||--|-
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~-----~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTD--YQIYAGARKVEQVP-----QY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS--CEEEEEESSGGGSC-----CC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred eEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCccchh-----hc--CCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 578888777664 3444444455 67777654432100 01 23322221 12 245556667888876654
Q ss_pred eEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 571 aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
....+---+|-.|+..+.-+|+..+++-+|...+
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 73 SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp CTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 4333333458899999999999999876665444
No 40
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=71.42 E-value=13 Score=31.68 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=34.6
Q ss_pred HHHHhCCCcEEEEc--ch---hHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 538 RRLLAKGLSCTYTH--IN---AVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 538 ~eL~~~GI~vTlI~--Ds---Av~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
..|.+.|++++... .. .+..+...+|+|++|++.- |.+-.-.|+..- -+.++-.+||+|+
T Consensus 73 ~~~~~~g~~~~~~v~~g~~~~~I~~~a~~~dliV~G~~~~---~~~~~~~Gs~~~-~vl~~~~~pVlvv 137 (138)
T 3idf_A 73 TFFTEKGINPFVVIKEGEPVEMVLEEAKDYNLLIIGSSEN---SFLNKIFASHQD-DFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHTTTCCCEEEEEESCHHHHHHHHHTTCSEEEEECCTT---STTSSCCCCTTC-HHHHHCSSCEEEE
T ss_pred HHHHHCCCCeEEEEecCChHHHHHHHHhcCCEEEEeCCCc---chHHHHhCcHHH-HHHhcCCCCEEEe
Confidence 34556788875543 22 2333333899999999752 222222254433 3345667999986
No 41
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=71.30 E-value=7.1 Score=38.90 Aligned_cols=110 Identities=9% Similarity=0.125 Sum_probs=65.7
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHH-hCCCcEEEE-cc----hhHHHHhcc--cc
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLL-AKGLSCTYT-HI----NAVSYIMHE--VT 563 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI-~D----sAv~~iM~~--Vd 563 (630)
.+.+||..|-++.+= .++..+.++|..++|++.+..+..........+. ..+ ++++ .| ..+..++.. +|
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPN--YYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTT--EEEEECCTTCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCC--eEEEEcCCCCHHHHHHHHhhcCCC
Confidence 467899999988664 4455566778789999887554221111111111 123 3333 23 455666666 88
Q ss_pred EEEEcceeEecCC--------ceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 564 RVFLGASSVLSNG--------TTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 564 ~VivGAdaI~aNG--------~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.||--|-....+. .-.|-.||..+.-+|+.++++-+|.+.+
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 8887664332211 1357789999999999999995555444
No 42
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=70.97 E-value=5.1 Score=43.35 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=60.6
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHHcC---CceEEEEcCC-C----------------CCchHHHHHHHHHhCC
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHELG---KQFRVVVVDS-R----------------PKHEGQALLRRLLAKG 544 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~g---k~f~ViV~ES-R----------------P~~eG~~La~eL~~~G 544 (630)
+.|+.+|++|++|...++.+.-..++....+++ ++++|+..-+ . +++-|-.+.+...+-+
T Consensus 10 eeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~~~~~lr~~i~~G~ 89 (436)
T 2oas_A 10 LEAVSLIRSGETLWTHSMGATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPTRPLLQSGD 89 (436)
T ss_dssp HHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSCCTTTHHHHHTTS
T ss_pred HHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhccCCCEEEEEecccCChhhhHHHhcCcEEEeecCCCHHHHHHHHcCC
Confidence 456778999999999988775555555544443 6788876321 1 1222223334444444
Q ss_pred CcEEEEcchhHHHHhc----cccEEEEcceeEecCCceecc
Q 006803 545 LSCTYTHINAVSYIMH----EVTRVFLGASSVLSNGTTYSR 581 (630)
Q Consensus 545 I~vTlI~DsAv~~iM~----~Vd~VivGAdaI~aNG~V~NK 581 (630)
+.++-+..+.+..++. .+|..|+.|...-.+|.+.-.
T Consensus 90 ~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~ 130 (436)
T 2oas_A 90 ADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLG 130 (436)
T ss_dssp SEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECT
T ss_pred CeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEe
Confidence 5444444455554443 589999999999999987643
No 43
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=70.18 E-value=37 Score=29.25 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=31.1
Q ss_pred hCCCc---EEEEcchhHHHHhc-----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 542 AKGLS---CTYTHINAVSYIMH-----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 542 ~~GI~---vTlI~DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+.|++ +.+......-.++. ++|+||+|++.-- | +---.|+..-.++ ++-.+||+|+-
T Consensus 82 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~--~-~~~~~Gs~~~~vl-~~~~~pVlvv~ 146 (150)
T 3tnj_A 82 TLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRH--G-LALLLGSTANSVL-HYAKCDVLAVR 146 (150)
T ss_dssp HHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC-----------CCCHHHHHH-HHCSSEEEEEE
T ss_pred HcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCC--C-cCeEecchHHHHH-HhCCCCEEEEe
Confidence 34776 33334333344433 6999999998632 2 2234566555444 45679999984
No 44
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=69.76 E-value=14 Score=35.99 Aligned_cols=102 Identities=10% Similarity=0.022 Sum_probs=60.4
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCc---hHHHHHHHHHhCCCcEEEE--cc-hhHHHHhccccEEEE
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKH---EGQALLRRLLAKGLSCTYT--HI-NAVSYIMHEVTRVFL 567 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~---eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~Vd~Viv 567 (630)
.+||..|-++.+= .++..+.+.| ++|+++.-.+.. +.......|...|+.+... .| .++..++..+|.||.
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 82 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC--CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence 4688888777543 3444445556 566666544321 2222334566667654322 12 456667777777776
Q ss_pred cceeEecCCceecccchHHHHHHHHhCC-CcEEEe
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFR-VPVLIC 601 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~-VPV~V~ 601 (630)
-|-.... -.|-.|+..+.-+|+..+ +.-+|.
T Consensus 83 ~a~~~~~---~~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 83 ALAGGVL---SHHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp CCCCSSS---STTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred CCccccc---hhhHHHHHHHHHHHHhcCCCceEEe
Confidence 5432111 126778999999999998 988874
No 45
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=69.31 E-value=8.2 Score=42.22 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=63.2
Q ss_pred HHHHHhhccCCCEEEeecChHHHHHHHHHHHH-----cCCceEEEEcC---------C----------CCCchHHHHHHH
Q 006803 484 VRHAATKVRDGDVLLTYGSSCVVEMILLYAHE-----LGKQFRVVVVD---------S----------RPKHEGQALLRR 539 (630)
Q Consensus 484 a~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e-----~gk~f~ViV~E---------S----------RP~~eG~~La~e 539 (630)
++.++.+|++|++|.+-+..++-..++....+ .-+++++|..- . ++++.|. ..+.
T Consensus 29 aeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~~f~~~-~~R~ 107 (455)
T 3qli_A 29 PEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYSMFVTA-VERA 107 (455)
T ss_dssp HHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEESSCCH-HHHH
T ss_pred HHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEeeCcCCh-hHHH
Confidence 34578899999999998887743333333222 23457776421 1 1345553 3466
Q ss_pred HHhCC--------CcEEEEcchhHHHHhc---cccEEEEcceeEecCCceec
Q 006803 540 LLAKG--------LSCTYTHINAVSYIMH---EVTRVFLGASSVLSNGTTYS 580 (630)
Q Consensus 540 L~~~G--------I~vTlI~DsAv~~iM~---~Vd~VivGAdaI~aNG~V~N 580 (630)
+.+.| +..+-+..+.+..++. .+|.+|+.+..+-.+|.+.-
T Consensus 108 ~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~ 159 (455)
T 3qli_A 108 LIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSL 159 (455)
T ss_dssp HHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEEC
T ss_pred HHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEE
Confidence 66666 5555555678887775 58999999999999998754
No 46
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=69.29 E-value=20 Score=32.63 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=61.3
Q ss_pred cCCCEEEeecChH--HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHh
Q 006803 492 RDGDVLLTYGSSC--VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIM 559 (630)
Q Consensus 492 ~dgdvILT~g~S~--tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM 559 (630)
..| ++++.+... -+..+.+..++ ..|++|.+++ .++.|.+.||+|+.|.. ..+..+|
T Consensus 24 ~~g-vliSv~d~dK~~l~~~a~~l~~--lGf~i~AT~G--------Ta~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i 92 (143)
T 2yvq_A 24 QKG-ILIGIQQSFRPRFLGVAEQLHN--EGFKLFATEA--------TSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLI 92 (143)
T ss_dssp CSE-EEEECCGGGHHHHHHHHHHHHT--TTCEEEEEHH--------HHHHHHHTTCCCEEECCGGGC-----CBCHHHHH
T ss_pred CCC-EEEEecccchHHHHHHHHHHHH--CCCEEEECch--------HHHHHHHcCCeEEEEEeccCCCcccccccHHHHH
Confidence 356 777766532 33444444443 4688887753 35778899999999963 2355555
Q ss_pred c--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 560 H--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 560 ~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+ +||+||--.+. .--...-.|.+=-+|-.|+||++--
T Consensus 93 ~~g~i~lVInt~~~-----~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 93 RDGSIDLVINLPNN-----NTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp HTTSCCEEEECCCC-----CGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred HCCCceEEEECCCC-----CCcCCccHHHHHHHHHHhCCCeEcC
Confidence 5 69999865432 1111345677778899999999853
No 47
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=68.96 E-value=30 Score=32.52 Aligned_cols=37 Identities=8% Similarity=-0.074 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
+-..+++.+.+.|+++..||++.-+.+.+.+|.+|.-
T Consensus 104 ~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~ 140 (200)
T 1vim_A 104 SVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVV 140 (200)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEE
Confidence 3455668888999999999998888888889998863
No 48
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=66.76 E-value=14 Score=33.23 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=38.4
Q ss_pred HHHhCCCcEEEEc--chhHHHHhc-----cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEeccccccccc
Q 006803 539 RLLAKGLSCTYTH--INAVSYIMH-----EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICCEAYKFHER 610 (630)
Q Consensus 539 eL~~~GI~vTlI~--DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~aet~Kf~~r 610 (630)
.|...|++++... ....-.++. .+|+||+|++.- |.+-. -+|+..-.+ .++-++||+|+-+..+-.+.
T Consensus 95 ~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~---~~~~~~~~Gsva~~v-l~~a~~pVlvv~~~~~~~~~ 170 (175)
T 2gm3_A 95 KCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGL---GRFQKVFVGTVSAFC-VKHAECPVMTIKRNADETPS 170 (175)
T ss_dssp HHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCC---C--------CHHHHH-HHHCSSCEEEEECCGGGSCS
T ss_pred HHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ChhhhhhcCchHHHH-HhCCCCCEEEEcCCcCCCCC
Confidence 3455788876443 222333333 599999999752 22222 256554444 45567999999766544444
Q ss_pred ccC
Q 006803 611 VQL 613 (630)
Q Consensus 611 ~~~ 613 (630)
-++
T Consensus 171 ~p~ 173 (175)
T 2gm3_A 171 DPA 173 (175)
T ss_dssp STT
T ss_pred CCC
Confidence 433
No 49
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=66.67 E-value=33 Score=31.40 Aligned_cols=37 Identities=11% Similarity=-0.148 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
+-..+++.+.+.|+++..||++.-+.+-+.+|.+|.-
T Consensus 94 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 130 (186)
T 1m3s_A 94 SLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRM 130 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEe
Confidence 3455668899999999999998777777788988753
No 50
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=66.53 E-value=22 Score=30.82 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=53.4
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH-----hccccEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI-----MHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~Vd~VivG 568 (630)
+..|+..|....=..+...+.+.| ++|+++|..|. .+..|.+.|+.+.+ .|..-... +.++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~~~-----~~~~~~~~~~~~~~-gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKSKE-----KIELLEDEGFDAVI-ADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHH-----HHHHHHHTTCEEEE-CCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHH-----HHHHHHHCCCcEEE-CCCCCHHHHHhCCcccCCEEEEe
Confidence 356888888665555666666555 56777776542 34566677876544 34322222 3467777765
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.. +.-....+++.|+..+++.+++
T Consensus 78 ~~---------~~~~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 78 GS---------DDEFNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp CS---------CHHHHHHHHHHHHHHCCCCEEE
T ss_pred cC---------CHHHHHHHHHHHHHhCCceEEE
Confidence 43 2233466778888776544433
No 51
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=66.21 E-value=16 Score=35.48 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=57.1
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCC-C--c--hHHHHHHHHHhCCCcEEEEc--c-hhHHHHhccccE
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRP-K--H--EGQALLRRLLAKGLSCTYTH--I-NAVSYIMHEVTR 564 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP-~--~--eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~ 564 (630)
+.+||..|-++.+= .++..+.+.| ++|+++.-++ . . +-...+..|...|+.+.... | ..+..++..+|.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG--NPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT--CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC--CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence 34688888877543 3444444556 4555554333 1 1 22223356667787654322 2 345666666666
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCC-CcEEEe
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFR-VPVLIC 601 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~-VPV~V~ 601 (630)
||.-| +..+-.|+..+.-+|+..+ |.-+|.
T Consensus 80 vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 110 (307)
T 2gas_A 80 VICAA-------GRLLIEDQVKIIKAIKEAGNVKKFFP 110 (307)
T ss_dssp EEECS-------SSSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred EEECC-------cccccccHHHHHHHHHhcCCceEEee
Confidence 65533 3333567888888888887 888874
No 52
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=65.98 E-value=1.1e+02 Score=30.50 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=53.5
Q ss_pred CCEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHH--HHHHhCCCcEEEEcc--------hhHHHHhc-
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALL--RRLLAKGLSCTYTHI--------NAVSYIMH- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~D--------sAv~~iM~- 560 (630)
..+++|.|.+..+..++..+.+ .+..-+|++.+ |.+.|.... ..+...|+.+..+.. ..+-..+.
T Consensus 91 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 168 (420)
T 1t3i_A 91 REIVYTRNATEAINLVAYSWGMNNLKAGDEIITTV--MEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE 168 (420)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET--TCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT
T ss_pred CeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECc--chhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC
Confidence 4577776666666666655410 22334566553 555554321 223346888777653 22233333
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++ ..--...|.+.. --.|+-+|++|++.++|
T Consensus 169 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 204 (420)
T 1t3i_A 169 KTKLVTV-VHISNTLGCVNP---AEEIAQLAHQAGAKVLV 204 (420)
T ss_dssp TEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHTTCEEEE
T ss_pred CceEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 3333333 222223455554 35678889999998876
No 53
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=65.97 E-value=20 Score=34.99 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=29.9
Q ss_pred cccEEEEcceeEecCCceeccc--c--hHHHHHHHHhCCCcEEEeccccccccc
Q 006803 561 EVTRVFLGASSVLSNGTTYSRV--G--TACVAMVAHAFRVPVLICCEAYKFHER 610 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKi--G--T~~lAlaAk~~~VPV~V~aet~Kf~~r 610 (630)
.+|..|+-|...-.+|.+.-.. + +..+|.+|+ +|+++.-++.++
T Consensus 148 ~~DVAli~a~~aD~~Gn~~~~~~~~~~~~~~a~aA~------~VIveVn~~vp~ 195 (220)
T 1k6d_A 148 RADLALIRAHRCDTLGNLTYQLSARNFNPLIALAAD------ITLVEPDELVET 195 (220)
T ss_dssp CEEEEEEEEEEEETTCCEECCHHHHTTHHHHHHHEE------EEEEEEEEEECT
T ss_pred CCcEEEEEeecCCCCceEEEecCCccccHHHHHhcC------EEEEEEccccCc
Confidence 5899999999999999976652 2 223455555 566666555554
No 54
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=65.79 E-value=48 Score=36.56 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=69.1
Q ss_pred HHHHhh--ccCCCEEEeecChH----HHHHHHHHHHHcC-CceEEEEcCCCCC-------------------chHHHHHH
Q 006803 485 RHAATK--VRDGDVLLTYGSSC----VVEMILLYAHELG-KQFRVVVVDSRPK-------------------HEGQALLR 538 (630)
Q Consensus 485 ~~a~~~--I~dgdvILT~g~S~----tV~~vL~~A~e~g-k~f~ViV~ESRP~-------------------~eG~~La~ 538 (630)
+.|+++ |++|++|...+..+ ++..++.++.+.+ ++++++-.-..+. +-|-.+ +
T Consensus 50 eEAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~~~~~~g~~~-r 128 (509)
T 1xr4_A 50 EEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKL-G 128 (509)
T ss_dssp HHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHHH-H
T ss_pred HHHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEEEEccCCHHH-H
Confidence 345667 89999999988765 3444555555444 5678775432221 112222 2
Q ss_pred HHHh---CCCcEEEEcchhHHHHhc----cccEEEEcceeEecCCceecccc-----hHHHHHHHHhCCCcEEE
Q 006803 539 RLLA---KGLSCTYTHINAVSYIMH----EVTRVFLGASSVLSNGTTYSRVG-----TACVAMVAHAFRVPVLI 600 (630)
Q Consensus 539 eL~~---~GI~vTlI~DsAv~~iM~----~Vd~VivGAdaI~aNG~V~NKiG-----T~~lAlaAk~~~VPV~V 600 (630)
++.. ..+|+.|..-....++|. .+|..|+.|...-.+|.+.-+-| +...+.++.....-||+
T Consensus 129 ~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~~a~a~~A~~VIa 202 (509)
T 1xr4_A 129 EEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVL 202 (509)
T ss_dssp HHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHHCSEEEE
T ss_pred HHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHHHHHHhhCCEEEE
Confidence 2222 247777774334667774 68999999999999999874323 44444445544444444
No 55
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=65.54 E-value=36 Score=34.33 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=50.3
Q ss_pred CCEEEeecChHHHHHHHHHHH------HcCCceEEEEcCCCCCchHHHHH-HHHHh---CCCcEEEEc-chhHHHHhccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAH------ELGKQFRVVVVDSRPKHEGQALL-RRLLA---KGLSCTYTH-INAVSYIMHEV 562 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~------e~gk~f~ViV~ESRP~~eG~~La-~eL~~---~GI~vTlI~-DsAv~~iM~~V 562 (630)
..+++|-|.+..+..+|..+. ..|. +|++++ .+.+.+...+ ..+.+ .|+.+.++. ...+-..+..-
T Consensus 89 ~~v~~~~g~t~al~~al~~~~~~~~~~~~gd--~vii~~-~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~l~~~i~~~ 165 (416)
T 1qz9_A 89 GEVVVTDTTSINLFKVLSAALRVQATRSPER--RVIVTE-TSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQD 165 (416)
T ss_dssp TSEEECSCHHHHHHHHHHHHHHHHHHHSTTC--CEEEEE-TTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTT
T ss_pred ccEEEeCChhHHHHHHHHhhcccccccCCCC--cEEEEc-CCCCCchHHHHHHHHHHhcCCceEEEeCcHHHHHHHhCCC
Confidence 467777554444444454443 3343 344443 3344332222 23333 288888875 33444444422
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.++|+-.+.-...|.+.. --.|+-+|+.||+.++|
T Consensus 166 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 200 (416)
T 1qz9_A 166 TAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIW 200 (416)
T ss_dssp EEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEE
T ss_pred ceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEE
Confidence 233332222223355544 35677788899988776
No 56
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=64.93 E-value=14 Score=36.53 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=57.9
Q ss_pred EEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--c-hhHHHHhccccEEEEccee
Q 006803 496 VLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--I-NAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 496 vILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGAda 571 (630)
+||..|-++.+= .++..+.+.| ++|+++.-.+. .-......|...|+.+.... | .++..++..+|.||.-|
T Consensus 13 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~-~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a-- 87 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSLKLG--HPTYVFTRPNS-SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISAL-- 87 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHHHTT--CCEEEEECTTC-SCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC--
T ss_pred eEEEECCCchHHHHHHHHHHHCC--CcEEEEECCCC-chhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECC--
Confidence 688888777543 3444445556 45666544433 22233455667787654332 1 45666677777666544
Q ss_pred EecCCceecccchHHHHHHHHhCC-CcEEEe
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFR-VPVLIC 601 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~-VPV~V~ 601 (630)
+..+-.++..+.-+|+..+ +..+|.
T Consensus 88 -----~~~~~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 88 -----AFPQILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp -----CGGGSTTHHHHHHHHHHHCCCCEEEC
T ss_pred -----chhhhHHHHHHHHHHHhcCCCCEEEe
Confidence 2333567888888888887 988874
No 57
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=64.86 E-value=33 Score=31.22 Aligned_cols=86 Identities=12% Similarity=0.008 Sum_probs=50.0
Q ss_pred CCEEEeecChHHHHHHHHHHHHc-CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--chh-HHHH--hccccEEEE
Q 006803 494 GDVLLTYGSSCVVEMILLYAHEL-GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--INA-VSYI--MHEVTRVFL 567 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~-gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--DsA-v~~i--M~~Vd~Viv 567 (630)
++.|+.+|....-..+...+.+. | ++|+++|..|. -+..|.+.|+.+.+.. |.. +..+ +.++|.||+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~~-----~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~ 111 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIREE-----AAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLL 111 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCHH-----HHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCHH-----HHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence 56788889877666666666665 6 46777777652 2455677888765432 111 2222 456777776
Q ss_pred cceeEecCCceecccchHHHHHHHHhCC
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFR 595 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~ 595 (630)
.... ......+...++..+
T Consensus 112 ~~~~---------~~~~~~~~~~~~~~~ 130 (183)
T 3c85_A 112 AMPH---------HQGNQTALEQLQRRN 130 (183)
T ss_dssp CCSS---------HHHHHHHHHHHHHTT
T ss_pred eCCC---------hHHHHHHHHHHHHHC
Confidence 4321 223345556677765
No 58
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=64.85 E-value=50 Score=30.05 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
+-..+++.+.+.|+++..||++.-+.+-+.+|.+|.-.
T Consensus 102 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 139 (187)
T 3sho_A 102 DTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAA 139 (187)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECC
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEec
Confidence 44566688889999999999988888888899988743
No 59
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=62.65 E-value=55 Score=27.80 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=34.6
Q ss_pred HHHhCCCcE--EEEc-chhHHHHhc-----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 539 RLLAKGLSC--TYTH-INAVSYIMH-----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 539 eL~~~GI~v--TlI~-DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.+.+.|+++ +.+. ......++. ++|+||+|++ . |. ..+.|+. .--+.++-++||+|+-
T Consensus 72 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~--~--~~-~~~lgs~-~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 72 LAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH--Q--DF-WSKLMSS-TRQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC--C--CC-HHHHHHH-HHHHHTTCCSEEEEEE
T ss_pred HHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC--C--ch-hhhhcch-HHHHHhcCCCCEEEee
Confidence 344568875 2332 223333333 4999999987 2 22 3446743 4445567789999984
No 60
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=62.40 E-value=15 Score=37.37 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=64.2
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEccee
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 571 (630)
..|..|..+|+-..+...+. +.++|+|+|-.|. .|. +++.+.-++++++|.||+-..+
T Consensus 139 ~~g~kV~vIG~~P~i~~~l~------~~~~v~V~d~~p~------------~g~----~p~~~~e~ll~~aD~viiTGsT 196 (270)
T 2h1q_A 139 VKGKKVGVVGHFPHLESLLE------PICDLSILEWSPE------------EGD----YPLPASEFILPECDYVYITCAS 196 (270)
T ss_dssp TTTSEEEEESCCTTHHHHHT------TTSEEEEEESSCC------------TTC----EEGGGHHHHGGGCSEEEEETHH
T ss_pred cCCCEEEEECCCHHHHHHHh------CCCCEEEEECCCC------------CCC----CChHHHHHHhhcCCEEEEEeee
Confidence 35789999999765555442 3579999999987 232 4788999999999999997766
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
+. ||++ -..+.++ + ....++++.+|.-+.+.+
T Consensus 197 lv-N~Ti-----~~lL~~~-~-~a~~vvl~GPS~p~~P~l 228 (270)
T 2h1q_A 197 VV-DKTL-----PRLLELS-R-NARRITLVGPGTPLAPVL 228 (270)
T ss_dssp HH-HTCH-----HHHHHHT-T-TSSEEEEESTTCCCCGGG
T ss_pred ee-cCCH-----HHHHHhC-c-cCCeEEEEecChhhhHHH
Confidence 55 4433 2233333 3 456999999998887753
No 61
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=62.39 E-value=97 Score=30.99 Aligned_cols=98 Identities=11% Similarity=0.011 Sum_probs=54.0
Q ss_pred EEEeecCh-HHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhc--cccE
Q 006803 496 VLLTYGSS-CVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMH--EVTR 564 (630)
Q Consensus 496 vILT~g~S-~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~--~Vd~ 564 (630)
+|++.+.. ..+..++..+. +..-+|++.+ |.+.|..+...+...|+.+..+... .+-..+. ++..
T Consensus 64 ~~~~~~s~t~al~~~~~~l~--~~gd~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 139 (416)
T 3isl_A 64 AYPIDGTSRAGIEAVLASVI--EPEDDVLIPI--YGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKI 139 (416)
T ss_dssp EEEEESCHHHHHHHHHHHHC--CTTCEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEecCcHHHHHHHHHHHhc--CCCCEEEEec--CCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcE
Confidence 33244443 33444444432 3334666665 5555644556677789988887532 3333343 4544
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
|++- +--...|.+.. --.|+-+|+.||+.++|=
T Consensus 140 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~D 172 (416)
T 3isl_A 140 VAMV-HGETSTGRIHP---LKAIGEACRTEDALFIVD 172 (416)
T ss_dssp EEEE-SEETTTTEECC---CHHHHHHHHHTTCEEEEE
T ss_pred EEEE-ccCCCCceecC---HHHHHHHHHHcCCEEEEE
Confidence 5443 32233454444 356888899999988873
No 62
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=62.06 E-value=38 Score=37.45 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=69.7
Q ss_pred HHHhh--ccCCCEEEeecChHHH----HHHHHHHHHcC-CceEEEEcCCCCCch-------------------HHHHHHH
Q 006803 486 HAATK--VRDGDVLLTYGSSCVV----EMILLYAHELG-KQFRVVVVDSRPKHE-------------------GQALLRR 539 (630)
Q Consensus 486 ~a~~~--I~dgdvILT~g~S~tV----~~vL~~A~e~g-k~f~ViV~ESRP~~e-------------------G~~La~e 539 (630)
.|+.+ |+||++|+..++.+.- ..++....+++ +.++++.....+... |.. .++
T Consensus 54 EAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~g~~-~r~ 132 (519)
T 2hj0_A 54 EAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLRDK-VGA 132 (519)
T ss_dssp HHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCHHH-HHH
T ss_pred HHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhcCCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCCCcH-HHH
Confidence 45567 9999999999987633 36666555544 467777653332211 111 234
Q ss_pred HHhCC---CcEEEEcchhHHHHhc----cccEEEEcceeEecCCceec---cc--chHHHHHHHHhCCCcEEE
Q 006803 540 LLAKG---LSCTYTHINAVSYIMH----EVTRVFLGASSVLSNGTTYS---RV--GTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 540 L~~~G---I~vTlI~DsAv~~iM~----~Vd~VivGAdaI~aNG~V~N---Ki--GT~~lAlaAk~~~VPV~V 600 (630)
+...| +|+.|-......+++. .+|..|+.|...-.+|.+.- +. |+...+.++.....-|||
T Consensus 133 ~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~~a~~A~~VIa 205 (519)
T 2hj0_A 133 AISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYADQVVI 205 (519)
T ss_dssp HHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHHHHHHCSEEEE
T ss_pred HHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHHHHhhCCEEEE
Confidence 44555 4665543334677765 58999999999999999873 22 334455555555544444
No 63
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=61.44 E-value=93 Score=28.66 Aligned_cols=38 Identities=0% Similarity=-0.253 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhCCCcEEEEcchhHHHHhcc---ccEEEEcc
Q 006803 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHE---VTRVFLGA 569 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~---Vd~VivGA 569 (630)
+=.++++.+.+.|+++..||++.-+.+.+. +|.+|.-.
T Consensus 128 ~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~ 168 (199)
T 1x92_A 128 NVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVP 168 (199)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECS
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeC
Confidence 335566888999999999999877777777 99887643
No 64
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=61.29 E-value=52 Score=32.62 Aligned_cols=101 Identities=10% Similarity=0.069 Sum_probs=55.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-----------hhHHHHhc-
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-----------NAVSYIMH- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~- 560 (630)
...+++|.|.+..+..++..+.+.| -+|++.+ |.+.|.... +...|+.+..+.- ..+-..+.
T Consensus 82 ~~~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 155 (383)
T 3kax_A 82 KEWIVFSAGIVPALSTSIQAFTKEN--ESVLVQP--PIYPPFFEM--VTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQ 155 (383)
T ss_dssp GGGEEEESCHHHHHHHHHHHHCCTT--CEEEECS--SCCHHHHHH--HHHTTCEEEECCCEEETTEEECCHHHHHHHHTT
T ss_pred hhhEEEcCCHHHHHHHHHHHhCCCC--CEEEEcC--CCcHHHHHH--HHHcCCEEEeccceecCCcEEEcHHHHHHHhCc
Confidence 3467777776666666666553333 3555544 666665433 4456776665531 22333333
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++ ...--..|.++..---..++-+|+.|++.+++
T Consensus 156 ~~~~v~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 156 GVKLMLL-CSPHNPIGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp TCCEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5666665 33322334444333334455568999998887
No 65
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=61.10 E-value=35 Score=30.65 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=60.4
Q ss_pred cCCCEEEeecChH-------HHHHHHHHHH--HcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE----EcchhHHHH
Q 006803 492 RDGDVLLTYGSSC-------VVEMILLYAH--ELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY----THINAVSYI 558 (630)
Q Consensus 492 ~dgdvILT~g~S~-------tV~~vL~~A~--e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl----I~DsAv~~i 558 (630)
.++.+|+..|+-. .+...+.... +.+..++++++-..+...-..+-..+.+.| .+++ +...-+..+
T Consensus 34 ~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~ 112 (200)
T 2bfw_A 34 DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVREL 112 (200)
T ss_dssp CSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHH
T ss_pred CCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHH
Confidence 3556788777644 3344444443 444678888876654112233445555666 7777 233478899
Q ss_pred hccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 559 MHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
|..+|.+|+-... .| .|+ ..+=|-.+|+||++.
T Consensus 113 ~~~ad~~l~ps~~---e~-----~~~--~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 113 YGSVDFVIIPSYF---EP-----FGL--VALEAMCLGAIPIAS 145 (200)
T ss_dssp HTTCSEEEECCSC---CS-----SCH--HHHHHHHTTCEEEEE
T ss_pred HHHCCEEEECCCC---CC-----ccH--HHHHHHHCCCCEEEe
Confidence 9999999885432 22 232 345666789998875
No 66
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=60.85 E-value=13 Score=37.78 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=71.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEe
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.+|.....+.|+ .++-.|.++.+-+...+..+....+.
T Consensus 71 ~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~~ 148 (294)
T 2yv1_A 71 ANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGV--KIIGPNTPGIASPKVGKLGIIPMEVL 148 (294)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEECSSCCEEEETTTEEEECCCGGGC
T ss_pred CCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCceeeccCcceeeecccCCC
Confidence 4788888888999999999999887766666776665555566677777777 46666666655554333333223333
Q ss_pred cCC--ceecccchHHHHH--HHHhCCCcEEE
Q 006803 574 SNG--TTYSRVGTACVAM--VAHAFRVPVLI 600 (630)
Q Consensus 574 aNG--~V~NKiGT~~lAl--aAk~~~VPV~V 600 (630)
.-| +++++.||+..++ .+...++.|--
T Consensus 149 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~ 179 (294)
T 2yv1_A 149 KEGSVGMVSRSGTLTYEIAHQIKKAGFGVST 179 (294)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCeEE
Confidence 345 5789999998877 45677887753
No 67
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=60.76 E-value=1.1e+02 Score=30.77 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=56.3
Q ss_pred CCEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcch--------hHHHHhccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHIN--------AVSYIMHEV 562 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~~V 562 (630)
..+++|.|-+..+..+|..+.+ .+..-+|++. .|.+.+...+ ..+...|+.+.++... .+-..+.+=
T Consensus 86 ~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 86 REIVFTSGATESDNLAIKGAANFYQKKGKHIITS--KTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDD 163 (423)
T ss_dssp GGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEE--TTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred CeEEEeCChHHHHHHHHHHHHHhhccCCCEEEEC--CccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCC
Confidence 3677777766666555554432 1223455554 3455554433 4456779988888632 233333322
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.++|+-...-...|.+.. --.|+-+|+.|++.+++
T Consensus 164 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 198 (423)
T 3lvm_A 164 TILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHV 198 (423)
T ss_dssp EEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEE
T ss_pred cEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEE
Confidence 234433322233455554 34577888999998776
No 68
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=60.03 E-value=9.9 Score=43.77 Aligned_cols=48 Identities=23% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCceEEEEcCCCCCch--HHHHHHHHHhCCCcEEEEc
Q 006803 504 CVVEMILLYAHELGKQFRVVVVDSRPKHE--GQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 504 ~tV~~vL~~A~e~gk~f~ViV~ESRP~~e--G~~La~eL~~~GI~vTlI~ 551 (630)
+-+...|..|+++|+..+|+|.-.....+ ....++.|.++|+.|.|-.
T Consensus 384 s~Iv~ALi~AA~rGv~V~vLvel~arfdee~ni~wa~~Le~aGv~Vv~g~ 433 (705)
T 2o8r_A 384 SSIISALEAAAQSGKKVSVFVELKARFDEENNLRLSERMRRSGIRIVYSM 433 (705)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCC----CHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCcchhhhHHHHHHHHHCCCEEEEcc
Confidence 45667777888889999988874333333 5677799999999987743
No 69
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=59.59 E-value=59 Score=32.42 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=54.2
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc--cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH--EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~ 564 (630)
.+++|.|.+..+..++..+.+.| -+|++.+ |.+.+..+...+...|+.+..+.. ..+-..+. ++..
T Consensus 71 ~v~~~~g~t~al~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 146 (396)
T 2ch1_A 71 TMCVSGSAHAGMEAMLSNLLEEG--DRVLIAV--NGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKC 146 (396)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSE
T ss_pred EEEECCcHHHHHHHHHHHhcCCC--CeEEEEc--CCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCE
Confidence 35566555555555555543333 3555553 456665433455667888877752 12333333 4566
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++ .+.--..|.++. --.|+-+|+.|++.++|
T Consensus 147 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 178 (396)
T 2ch1_A 147 LFL-THGDSSSGLLQP---LEGVGQICHQHDCLLIV 178 (396)
T ss_dssp EEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEE-ECCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 665 333334465555 23577788889987765
No 70
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=59.30 E-value=26 Score=34.07 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=58.7
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCc----hHHHHHHHHHhCCCcEEEEc--c-hhHHHHhccccEE
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKH----EGQALLRRLLAKGLSCTYTH--I-NAVSYIMHEVTRV 565 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~----eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~V 565 (630)
..+||..|-++.+= .++..+.+.| ++|+++.-++.. +-...+..|...|+.+.... | .++..++..+|.|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC--CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEE
Confidence 34688888877553 3444445556 566665443321 22233456667777553321 2 3456666666666
Q ss_pred EEcceeEecCCceecccchHHHHHHHHhCC-CcEEEe
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHAFR-VPVLIC 601 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~~~-VPV~V~ 601 (630)
|.-| +..+-.|+..++-+|+..+ ++-+|.
T Consensus 82 i~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 82 ISTV-------GSLQIESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp EECC-------CGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred EECC-------cchhhhhHHHHHHHHHhcCCCceEee
Confidence 5543 3344568888888888888 988874
No 71
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=58.96 E-value=58 Score=32.31 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=59.5
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh-------H-HHHhcccc
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA-------V-SYIMHEVT 563 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-------v-~~iM~~Vd 563 (630)
....+++|-|.+..+..++..+...+..-+|++. .|.+.|... .+...|+.+..+.... + ..+-+++.
T Consensus 81 ~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (376)
T 3ezs_A 81 KENELISTLGSREVLFNFPSFVLFDYQNPTIAYP--NPFYQIYEG--AAKFIKAKSLLMPLTKENDFTPSLNEKELQEVD 156 (376)
T ss_dssp CGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEE--ESCCTHHHH--HHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCS
T ss_pred CHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEe--cCCcHhHHH--HHHHcCCEEEEcccCCCCCcchhHHhhhccCCC
Confidence 3456888888888777777665443102355554 456655443 3456788887775321 1 11223566
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|++- .--...|.++..---..++-+|+.|++.+++
T Consensus 157 ~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 192 (376)
T 3ezs_A 157 LVILN-SPNNPTGRTLSLEELISWVKLALKHDFILIN 192 (376)
T ss_dssp EEEEC-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEc-CCCCCcCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 77663 2222334444433344566678899998776
No 72
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=58.55 E-value=28 Score=34.23 Aligned_cols=98 Identities=7% Similarity=0.081 Sum_probs=57.5
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCC-C---chHHHHHHHHHhCCCcEEEEc--c-hhHHHHhccccEEE
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRP-K---HEGQALLRRLLAKGLSCTYTH--I-NAVSYIMHEVTRVF 566 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP-~---~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~Vi 566 (630)
.+||..|-++.+= .+++.+.+.| ++|+++.-++ . -+-......|...|+.+.... | .++..++..+|.||
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSFS--HPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cEEEEEcCCchhHHHHHHHHHhCC--CcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 4688888777543 3444444556 5566654443 1 122233345666777554321 2 35666677776665
Q ss_pred EcceeEecCCceecccchHHHHHHHHhCC-CcEEEe
Q 006803 567 LGASSVLSNGTTYSRVGTACVAMVAHAFR-VPVLIC 601 (630)
Q Consensus 567 vGAdaI~aNG~V~NKiGT~~lAlaAk~~~-VPV~V~ 601 (630)
.-| +...-.++..+.-+|+..+ |.-+|.
T Consensus 83 ~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 83 SAL-------PFPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp ECC-------CGGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred ECC-------CccchhhHHHHHHHHHHhCCccEEec
Confidence 543 3333567888888888888 988873
No 73
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=58.20 E-value=15 Score=37.36 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=73.2
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
+-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.+|.....+.|| .++-.|.++.+.+...+..+....+
T Consensus 64 ~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi--~vigPNc~Gii~~~~~~~~~~~~~~ 141 (288)
T 1oi7_A 64 EVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGS--RLIGGNCPGIISAEETKIGIMPGHV 141 (288)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEEESSSCEEEETTTEEEESSCGGG
T ss_pred CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEeCCCCeEEcCCCceeEEcccCC
Confidence 34788888888899999999999887766777776665544566676777777 4676776666655443433333333
Q ss_pred ecCC--ceecccchHHHHHH--HHhCCCcEEE
Q 006803 573 LSNG--TTYSRVGTACVAMV--AHAFRVPVLI 600 (630)
Q Consensus 573 ~aNG--~V~NKiGT~~lAla--Ak~~~VPV~V 600 (630)
..-| +++++.||+..+++ +...++.|--
T Consensus 142 ~~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~ 173 (288)
T 1oi7_A 142 FKRGRVGIISRSGTLTYEAAAALSQAGLGTTT 173 (288)
T ss_dssp CCEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 3344 57899999988876 5667887753
No 74
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=58.10 E-value=50 Score=32.83 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=56.0
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-----------hhHHHHhc-
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-----------NAVSYIMH- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~- 560 (630)
...+++|-|.+..+..++..+.+.| -+|++.+ |.+.|... .+...|+.+..+.. ..+-..+.
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 158 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFTSPG--DQILVQE--PVYNMFYS--VIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT 158 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTT--CEEEECS--SCCHHHHH--HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS
T ss_pred HHHEEECCCHHHHHHHHHHHhCCCC--CeEEECC--CCcHHHHH--HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc
Confidence 3456777666666666665553333 3455443 56655433 34456776665432 23334443
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
++..|++ .+.--..|.++..----.|+-+|+.|++.+++=
T Consensus 159 ~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 199 (391)
T 3dzz_A 159 PSVRMMVF-CNPHNPIGYAWSEEEVKRIAELCAKHQVLLISD 199 (391)
T ss_dssp TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEE-ECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 4555544 333333455554444556777899999988873
No 75
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=57.80 E-value=28 Score=30.51 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=36.2
Q ss_pred HHHHhCCCcEEEEc--chhHHHH---hc--cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEec
Q 006803 538 RRLLAKGLSCTYTH--INAVSYI---MH--EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 538 ~eL~~~GI~vTlI~--DsAv~~i---M~--~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~a 602 (630)
..|...|++++... ......+ .. ++|+||+|++.- |.+-. -.|+..--+ .++-++||+|+=
T Consensus 90 ~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~---~~~~~~~~GSv~~~v-l~~~~~pVlvv~ 158 (162)
T 1mjh_A 90 KELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGK---TNLKEILLGSVTENV-IKKSNKPVLVVK 158 (162)
T ss_dssp HHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCS---SCCTTCSSCHHHHHH-HHHCCSCEEEEC
T ss_pred HHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCC---CCccceEecchHHHH-HHhCCCCEEEEe
Confidence 34556798876543 2222223 33 699999999853 22222 256654444 445689999984
No 76
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=57.46 E-value=74 Score=32.21 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=53.8
Q ss_pred CCCEEE--eecChHHHHHHH--HHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHH
Q 006803 493 DGDVLL--TYGSSCVVEMIL--LYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYI 558 (630)
Q Consensus 493 dgdvIL--T~g~S~tV~~vL--~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~i 558 (630)
..++++ |.|-+..+..++ ......|. +|++.+ |.+.|... .+...|+.+..+.. ..+-..
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd--~Vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 169 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDK--LVYLSK--PTWANHMA--IFENQGLKTATYPYWANETKSLDLNGFLNA 169 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEEE--SCCTTHHH--HHHTTTCCEEEEECEETTTTEECHHHHHHH
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCC--EEEEeC--CCCccHHH--HHHHcCceEEEEeeecCCCCccCHHHHHHH
Confidence 346777 777776666552 23333332 466553 66655433 34456887776642 122233
Q ss_pred hcc---ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 559 MHE---VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 559 M~~---Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+.. .++|++=+..-...|.+++.-=-..|+-+|+.|++.+++
T Consensus 170 l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~ 214 (412)
T 1yaa_A 170 IQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALF 214 (412)
T ss_dssp HHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 332 245554333333344444433233577788899987776
No 77
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=57.21 E-value=1.2e+02 Score=29.48 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCceEEEEcCCCCCchHHHH----HHHHHhCCCcEEEEcc---hhHHHHhc-----cccEEEEcceeE
Q 006803 505 VVEMILLYAHELGKQFRVVVVDSRPKHEGQAL----LRRLLAKGLSCTYTHI---NAVSYIMH-----EVTRVFLGASSV 572 (630)
Q Consensus 505 tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L----a~eL~~~GI~vTlI~D---sAv~~iM~-----~Vd~VivGAdaI 572 (630)
.+...+..|...+..++++.+.. | .+.... ...+...|++++.... .....++. .+|+||+|.+.-
T Consensus 23 al~~A~~la~~~~a~l~ll~v~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~ 100 (290)
T 3mt0_A 23 ALKRAQLIAGVTQSHLHLLVCEK-R-RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPD 100 (290)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECS-S-SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHHHHHhcCCeEEEEEeeC-c-HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccC
Confidence 44555555666677777554432 3 233322 3556678999877643 23333433 589999999752
Q ss_pred ecCCceec-ccchHHHHHHHHhCCCcEEEecccccc
Q 006803 573 LSNGTTYS-RVGTACVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 573 ~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~aet~Kf 607 (630)
|.+-. -.|+..-.+ .++.++||+|+-+...+
T Consensus 101 ---~~~~~~~~gs~~~~v-l~~~~~PVlvv~~~~~~ 132 (290)
T 3mt0_A 101 ---NPLKKAILTPDDWKL-LRFAPCPVLMTKTARPW 132 (290)
T ss_dssp ---CTTSTTSCCHHHHHH-HHHCSSCEEEECCCSCS
T ss_pred ---CchhhcccCHHHHHH-HhcCCCCEEEecCCCCC
Confidence 22222 256655544 46778999999754443
No 78
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=57.16 E-value=57 Score=31.11 Aligned_cols=99 Identities=22% Similarity=0.183 Sum_probs=53.0
Q ss_pred EEEeecChHHHHHHHHHH----HHcCCceEEEEcCCCCCc---hHHHHHHHHHhCCCcEEEEc--chhHHHH---hcccc
Q 006803 496 VLLTYGSSCVVEMILLYA----HELGKQFRVVVVDSRPKH---EGQALLRRLLAKGLSCTYTH--INAVSYI---MHEVT 563 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A----~e~gk~f~ViV~ESRP~~---eG~~La~eL~~~GI~vTlI~--DsAv~~i---M~~Vd 563 (630)
+++-+..|......|..| ...+-.++|+-+...+.. .-..+...|.+.|+++++.. .+..-.+ ..+.|
T Consensus 157 ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~d 236 (268)
T 3ab8_A 157 ALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPARAEAWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPGD 236 (268)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTTE
T ss_pred EEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHHHHHHHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhCC
Confidence 344455666544455443 334666775544332211 12234567888899887642 2222233 33459
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
++++|+ . -.+- -.|+..-.+ .++-.+||+|+
T Consensus 237 liV~G~-~--~~~~---~~Gs~~~~v-l~~~~~pvlvv 267 (268)
T 3ab8_A 237 LLALGA-P--VRRL---VFGSTAERV-IRNAQGPVLTA 267 (268)
T ss_dssp EEEEEC-C--CSCC---SSCCHHHHH-HHHCSSCEEEE
T ss_pred EEEECC-c--cccc---EeccHHHHH-HhcCCCCEEEe
Confidence 999999 1 1111 235544444 45668999986
No 79
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=57.12 E-value=28 Score=32.25 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=59.5
Q ss_pred CEEEeecChHHHHHH-HHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhccccEEEEc
Q 006803 495 DVLLTYGSSCVVEMI-LLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMHEVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~v-L~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~Vd~VivG 568 (630)
.+||..|-++.+=.. +..+.++| .+|+++.-++... ....-.++++ .| ..+..++..+|.||--
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~--------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPEKI--------KIENEHLKVKKADVSSLDEVCEVCKGADAVISA 74 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGGGC--------CCCCTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcccc--------hhccCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence 478999988876544 44444555 6788776554321 0111223333 23 4466677788888876
Q ss_pred ceeEecCCc--eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 569 ASSVLSNGT--TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 569 AdaI~aNG~--V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|-....+-. -.|-.||..+.-+|+.+++.-+|.+.+
T Consensus 75 a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 75 FNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp CCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 633322211 127889999999999999876666554
No 80
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=56.75 E-value=59 Score=32.17 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=55.2
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc------hhHHHHhc-cccE
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI------NAVSYIMH-EVTR 564 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D------sAv~~iM~-~Vd~ 564 (630)
....+++|-|.+..+..++..+.+.| -+|++.+ |.+.|.... +...|+.+..+.. ..+-..+. +...
T Consensus 80 ~~~~i~~t~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~--~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~ 153 (377)
T 3fdb_A 80 RPEWIFPIPDVVRGLYIAIDHFTPAQ--SKVIVPT--PAYPPFFHL--LSATQREGIFIDATGGINLHDVEKGFQAGARS 153 (377)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHSCTT--CCEEEEE--SCCTHHHHH--HHHHTCCEEEEECTTSCCHHHHHHHHHTTCCE
T ss_pred CHHHEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCcHhHHHH--HHHcCCEEEEccCCCCCCHHHHHHHhccCCCE
Confidence 34467777776666666665553333 3455543 566665433 3445888877752 23333333 3444
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++- +.--..|.++..---..++-+|+.|++.+++
T Consensus 154 v~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 188 (377)
T 3fdb_A 154 ILLC-NPYNPLGMVFAPEWLNELCDLAHRYDARVLV 188 (377)
T ss_dssp EEEE-SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4433 1122234444333334466678999998887
No 81
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=56.75 E-value=27 Score=37.20 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=44.0
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhcc-ccEEEEcc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHE-VTRVFLGA 569 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~-Vd~VivGA 569 (630)
|..|+.+|-..+=..+-+.++++| ++|.+.|.++..+. .++..|.+.||++.+-.+.. .++.. +|.||++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~~~-~~~~~L~~~gi~~~~g~~~~--~~~~~~~d~vv~sp 80 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFDEN-PTAQSLLEEGIKVVCGSHPL--ELLDEDFCYMIKNP 80 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGGGC-HHHHHHHHTTCEEEESCCCG--GGGGSCEEEEEECT
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCcccCC-hHHHHHHhCCCEEEECCChH--HhhcCCCCEEEECC
Confidence 566777654433223344455545 78999999875432 34578999999887654422 24455 78887754
No 82
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=56.47 E-value=11 Score=37.29 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=55.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|..||..|...+...-++...+.|-.+.|+ +.....+ ...|.+.| .++++...--...+..+|+||...+.-
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVv--ap~~~~~----l~~l~~~~-~i~~i~~~~~~~dL~~adLVIaAT~d~ 102 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVV--APTVSAE----INEWEAKG-QLRVKRKKVGEEDLLNVFFIVVATNDQ 102 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEE--CSSCCHH----HHHHHHTT-SCEEECSCCCGGGSSSCSEEEECCCCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEE--CCCCCHH----HHHHHHcC-CcEEEECCCCHhHhCCCCEEEECCCCH
Confidence 4789999999999888888887777655554 4332221 34444443 345554322223456788887543321
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
-+ ...++..|+ .+|||-|+
T Consensus 103 -----~~----N~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 103 -----AV----NKFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp -----HH----HHHHHHHSC-TTCEEEC-
T ss_pred -----HH----HHHHHHHHh-CCCEEEEe
Confidence 22 245777788 99998776
No 83
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=56.24 E-value=29 Score=34.40 Aligned_cols=44 Identities=18% Similarity=0.099 Sum_probs=30.1
Q ss_pred cccEEEEcceeEecCCceecc-c-c--hHHHHHHHHhCCCcEEEeccccccccc
Q 006803 561 EVTRVFLGASSVLSNGTTYSR-V-G--TACVAMVAHAFRVPVLICCEAYKFHER 610 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NK-i-G--T~~lAlaAk~~~VPV~V~aet~Kf~~r 610 (630)
.+|..|+-|...-.+|.+.-. . + ...+|++|+ +|+++.-++.++
T Consensus 151 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk------~VIveVn~~vp~ 198 (241)
T 3cdk_A 151 TGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK------ITIAEAEEIVEA 198 (241)
T ss_dssp CEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE------EEEEEEEEEECT
T ss_pred CCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC------EEEEEEeCCCCc
Confidence 589999999999999997664 2 2 344566666 555555554444
No 84
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=55.98 E-value=20 Score=38.20 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=60.8
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH-----hccccEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI-----MHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~Vd~VivG 568 (630)
++.|+..|+...-..+.+.+.+.| +.|+|+|..|. .+..|.+.|+++.+- |..=..+ +.+++.||+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~~-----~v~~~~~~g~~vi~G-Dat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDPD-----HIETLRKFGMKVFYG-DATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCHH-----HHHHHHHTTCCCEES-CTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH-----HHHHHHhCCCeEEEc-CCCCHHHHHhcCCCccCEEEEC
Confidence 456888888776666666666655 56888888764 356777889986544 4333323 3468888876
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCC--cEEEecc
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRV--PVLICCE 603 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~V--PV~V~ae 603 (630)
.+ +..-+..+++.|+.++. ++++-+.
T Consensus 76 ~~---------~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 76 ID---------DPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp CS---------SHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 54 34556778889998765 4555443
No 85
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=55.89 E-value=82 Score=28.11 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=36.0
Q ss_pred HHHHhCCCc-EEEEc--chhHHHHhc-----cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEec
Q 006803 538 RRLLAKGLS-CTYTH--INAVSYIMH-----EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 538 ~eL~~~GI~-vTlI~--DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~a 602 (630)
..|...|++ ++... ....-.++. ++|+||+|++.- |.+-. -.|+..--++ ++-.+||+|+-
T Consensus 88 ~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~---~~~~~~~lGSva~~vl-~~a~~PVlvV~ 157 (163)
T 1tq8_A 88 ERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL---STIAGRLLGSVPANVS-RRAKVDVLIVH 157 (163)
T ss_dssp HHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCC---CSHHHHHTBBHHHHHH-HHTTCEEEEEC
T ss_pred HHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCC---CcccceeeccHHHHHH-HhCCCCEEEEe
Confidence 445667998 65433 233333333 699999999742 22222 2465544444 45679999984
No 86
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=55.87 E-value=1.6e+02 Score=29.15 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=53.0
Q ss_pred CCEEEeecChHHHHHHHHHHH----HcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcch--------hHHHHhc
Q 006803 494 GDVLLTYGSSCVVEMILLYAH----ELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHIN--------AVSYIMH 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~----e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~ 560 (630)
..+++|-|-+..+..++..+. +.|. .+|++.+ +.+.+.... ..+...|+.+..+... .+-..+.
T Consensus 81 ~~v~~~~g~t~al~~~~~~l~~~~~~~gd-~~Vl~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 157 (400)
T 3vax_A 81 DELIFTSGATESNNIALLGLAPYGERTGR-RHIITSA--IEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR 157 (400)
T ss_dssp GGEEEESCHHHHHHHHHHTTHHHHHHHTC-CEEEEET--TSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC
T ss_pred CcEEEeCCHHHHHHHHHHHHHHhhccCCC-CEEEECc--cccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC
Confidence 357777666665555555443 3343 1566653 333333222 4455679998888632 1222222
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.=.++|+=...--..|.+.. --.|+-+|+.||+.++|
T Consensus 158 ~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~ 194 (400)
T 3vax_A 158 PDTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHV 194 (400)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEE
T ss_pred CCceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEE
Confidence 22233333322233454443 25677889999998876
No 87
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=55.87 E-value=78 Score=31.43 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=55.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-c-hhHHHHhc-cccEEEEcc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-I-NAVSYIMH-EVTRVFLGA 569 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D-sAv~~iM~-~Vd~VivGA 569 (630)
...+++|.|.+..+..++..+...| -+|++.+ |.+.|.... +...|+.+..+. | ..+-..+. ++..|++ .
T Consensus 89 ~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~~~--~~~~g~~~~~v~~d~~~l~~~l~~~~~~v~~-~ 161 (370)
T 2z61_A 89 PDNIIITGGSSLGLFFALSSIIDDG--DEVLIQN--PCYPCYKNF--IRFLGAKPVFCDFTVESLEEALSDKTKAIII-N 161 (370)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTT--CEEEEES--SCCTHHHHH--HHHTTCEEEEECSSHHHHHHHCCSSEEEEEE-E
T ss_pred hhhEEECCChHHHHHHHHHHhcCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEeCCCHHHHHHhcccCceEEEE-c
Confidence 3467788777766666666553333 3566554 556665443 445788887774 2 23333333 3445554 2
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.---..|.++..- |+-+|+.|++.+++
T Consensus 162 ~p~nptG~~~~~~----l~~~~~~~~~~li~ 188 (370)
T 2z61_A 162 SPSNPLGEVIDRE----IYEFAYENIPYIIS 188 (370)
T ss_dssp SSCTTTCCCCCHH----HHHHHHHHCSEEEE
T ss_pred CCCCCcCcccCHH----HHHHHHHcCCEEEE
Confidence 2222346666554 77788889987776
No 88
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=55.68 E-value=60 Score=32.34 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=52.6
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc--cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH--EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~ 564 (630)
.+++|.|-+..+..++..+...| -+|++.+ |.+.|..+...+...|+.+.++.. ..+-..+. ++..
T Consensus 72 ~i~~~~g~t~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 147 (393)
T 2huf_A 72 TFCLSASGHGGMEATLCNLLEDG--DVILIGH--TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSV 147 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEEcCcHHHHHHHHHHHHhCCC--CEEEEEC--CCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcE
Confidence 35566665555555555543333 3566654 344444333444567888877751 12223332 4555
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++- +.--..|.+.. --.|+-+|+.|++.++|
T Consensus 148 v~~~-~~~nptG~~~~---l~~i~~~~~~~~~~li~ 179 (393)
T 2huf_A 148 LFLT-QGDSSTGVLQG---LEGVGALCHQHNCLLIV 179 (393)
T ss_dssp EEEE-SEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEEE-ccCCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 5552 22223354444 24577788899998776
No 89
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=55.56 E-value=35 Score=33.32 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=56.1
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-------hHHHHhcc-----
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-------AVSYIMHE----- 561 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~~----- 561 (630)
..+++|.|-+..+..++..+.+.| -+|++. .|.+.+...+..+...|+.+..+... .+-..+.+
T Consensus 67 ~~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~ 142 (359)
T 1svv_A 67 ADVHFISGGTQTNLIACSLALRPW--EAVIAT--QLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEH 142 (359)
T ss_dssp SEEEEESCHHHHHHHHHHHHCCTT--EEEEEE--TTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTT
T ss_pred ccEEEeCCchHHHHHHHHHHhCCC--CEEEEc--ccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhcc
Confidence 456777777777666666654333 356654 35555543321355679888887632 23333332
Q ss_pred ---ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 562 ---VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 562 ---Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+..|++- . ....|.++..-=--.|+-+|+.||+.++|=
T Consensus 143 ~~~~~~v~~~-~-~~ptG~~~~~~~l~~i~~~~~~~~~~li~D 183 (359)
T 1svv_A 143 MVIPKLVYIS-N-TTEVGTQYTKQELEDISASCKEHGLYLFLD 183 (359)
T ss_dssp SCEEEEEEEE-S-SCTTSCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEE-c-CCCCceecCHHHHHHHHHHHHHhCCEEEEE
Confidence 3445443 2 223355554311234677888899987763
No 90
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=55.42 E-value=21 Score=31.77 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=35.3
Q ss_pred HHHhCCCcEEE---Ecc-h---hHHHHhc--cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEecc
Q 006803 539 RLLAKGLSCTY---THI-N---AVSYIMH--EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 539 eL~~~GI~vTl---I~D-s---Av~~iM~--~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ae 603 (630)
.|...|++++. +.. . .+..+.. ++|+||+|++.- +.+-. -.|+..-- +.++.++||+|+-+
T Consensus 86 ~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~---~~~~~~~~Gsv~~~-vl~~~~~PVlvv~~ 156 (170)
T 2dum_A 86 EVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK---LSLSHEFLGSTVMR-VLRKTKKPVLIIKE 156 (170)
T ss_dssp HHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCC---CC--TTCCCHHHHH-HHHHCSSCEEEECC
T ss_pred HHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCC---CccccceechHHHH-HHHhCCCCEEEEcc
Confidence 34456888765 322 2 2233333 799999999852 22322 25654444 44557899999843
No 91
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=55.29 E-value=1.7e+02 Score=28.99 Aligned_cols=101 Identities=10% Similarity=0.138 Sum_probs=53.5
Q ss_pred CCEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHH-HH-HHhCCCcEEEEcc--------hhHHHHhc-
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALL-RR-LLAKGLSCTYTHI--------NAVSYIMH- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La-~e-L~~~GI~vTlI~D--------sAv~~iM~- 560 (630)
..+++|.|.+..+..++..+.+ .+..-+|++.+ |.+.|.... .. +...|+.+..+.. ..+-..+.
T Consensus 86 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~ 163 (406)
T 1kmj_A 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQ--MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE 163 (406)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET--TCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT
T ss_pred CeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEec--ccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4677777766666666655411 22334666654 444443222 22 3345887777742 23333343
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++ ...-...|.+.. --.|+-+|+.|++.++|
T Consensus 164 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 199 (406)
T 1kmj_A 164 KTRLLAI-THVSNVLGTENP---LAEMITLAHQHGAKVLV 199 (406)
T ss_dssp TEEEEEE-ESBCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred CCeEEEE-eCCCccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 3333433 222223355555 45677889999998776
No 92
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=55.07 E-value=77 Score=32.83 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=53.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHH--HHHhCCCcEEEE-cc---hhHHHHhc-cccEEEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLR--RLLAKGLSCTYT-HI---NAVSYIMH-EVTRVFL 567 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~--eL~~~GI~vTlI-~D---sAv~~iM~-~Vd~Viv 567 (630)
+.|++-+.+..+..+|..+.. ..-+|++. .|.+.|....+ .+...|+.++++ .. ..+-..+. ++..|++
T Consensus 75 ~~v~~~sGt~A~~~~l~~~~~--~gd~vi~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~ 150 (421)
T 2ctz_A 75 AALATASGHAAQFLALTTLAQ--AGDNIVST--PNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWV 150 (421)
T ss_dssp EEEEESSHHHHHHHHHHHHCC--TTCEEEEC--SCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEE
T ss_pred ceEEecCHHHHHHHHHHHHhC--CCCEEEEe--CCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEE
Confidence 345443334444444444333 33456664 35666654443 256789999988 42 23334444 3434443
Q ss_pred cceeEec-CCceecccchHHHHHHHHhCCCcEEE
Q 006803 568 GASSVLS-NGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 568 GAdaI~a-NG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+.+.. .|.+.. --.|+-+|+.||++++|
T Consensus 151 --~~~~n~~G~~~~---l~~i~~~a~~~g~~liv 179 (421)
T 2ctz_A 151 --ESIGNPALNIPD---LEALAQAAREKGVALIV 179 (421)
T ss_dssp --ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred --ECCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 33332 344443 45688889999998886
No 93
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=54.57 E-value=91 Score=30.21 Aligned_cols=104 Identities=21% Similarity=0.362 Sum_probs=57.3
Q ss_pred EEEeecChHHHHHHHHHH----HHcCCceEEEEcCCCCC-c-hHHHHHHHHHhCCCcEEEEc--chhHHHHhc-----cc
Q 006803 496 VLLTYGSSCVVEMILLYA----HELGKQFRVVVVDSRPK-H-EGQALLRRLLAKGLSCTYTH--INAVSYIMH-----EV 562 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A----~e~gk~f~ViV~ESRP~-~-eG~~La~eL~~~GI~vTlI~--DsAv~~iM~-----~V 562 (630)
+++-+..|......|..| ...+..++|+-+...+. . .-..+...|.+.|+++++.. .+....++. ++
T Consensus 173 Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 252 (294)
T 3loq_A 173 VLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINA 252 (294)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCc
Confidence 444466666444444443 34566677554433222 1 12334577888999865443 333333333 68
Q ss_pred cEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEecc
Q 006803 563 TRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ae 603 (630)
|++++|+.. .|.+-. -.|+..-. +.++-.+||+|+=+
T Consensus 253 dLlV~G~~~---~~~~~~~~~Gs~~~~-vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 253 TTIFMGSRG---AGSVMTMILGSTSES-VIRRSPVPVFVCKR 290 (294)
T ss_dssp SEEEEECCC---CSCHHHHHHHCHHHH-HHHHCSSCEEEECS
T ss_pred CEEEEeCCC---CCCccceeeCcHHHH-HHhcCCCCEEEECC
Confidence 999999974 222222 14444333 44677899999844
No 94
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=54.47 E-value=95 Score=31.68 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=57.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc----------c-hhHHHHhc--
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH----------I-NAVSYIMH-- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----------D-sAv~~iM~-- 560 (630)
..+++|-|.+..+..+|+.+. +..-+|++.+ |.+.|...+ +...|..+..+. | ..+-..+.
T Consensus 120 ~~v~~~~g~~ea~~~a~~~~~--~~gd~Vi~~~--~~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~ 193 (421)
T 3l8a_A 120 EDILFIDGVVPAISIALQAFS--EKGDAVLINS--PVYYPFART--IRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN 193 (421)
T ss_dssp GGEEEESCHHHHHHHHHHHHS--CTEEEEEEEE--SCCHHHHHH--HHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT
T ss_pred HHEEEcCCHHHHHHHHHHHhc--CCCCEEEECC--CCcHHHHHH--HHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc
Confidence 456777666656666666553 2334566544 667675443 334576665553 2 23334443
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++ ...--..|.++.+----.|+-+|+.|++.+++
T Consensus 194 ~~~~vil-~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~ 232 (421)
T 3l8a_A 194 NVKIYLL-CSPHNPGGRVWDNDDLIKIAELCKKHGVILVS 232 (421)
T ss_dssp TEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4556655 33333345555544555677889999998886
No 95
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=54.04 E-value=37 Score=34.37 Aligned_cols=112 Identities=10% Similarity=0.091 Sum_probs=66.5
Q ss_pred cCCCEEEeecChHHHHH-HHHHHHHc-CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEE
Q 006803 492 RDGDVLLTYGSSCVVEM-ILLYAHEL-GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRV 565 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~-vL~~A~e~-gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~V 565 (630)
..|.+||..|-++.+=. +++.+.+. |. .+|+++...+. ....+..+|...++.+ ++.| ..+..++..+|.|
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~-~~~~~~~~~~~~~v~~-~~~Dl~d~~~l~~~~~~~D~V 95 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDEL-KQSEMAMEFNDPRMRF-FIGDVRDLERLNYALEGVDIC 95 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHH-HHHHHHHHHCCTTEEE-EECCTTCHHHHHHHTTTCSEE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChh-hHHHHHHHhcCCCEEE-EECCCCCHHHHHHHHhcCCEE
Confidence 34678999998886643 34444455 42 26666654332 2233445554444433 3334 4566778888888
Q ss_pred EEcceeEec--------CCceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 566 FLGASSVLS--------NGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 566 ivGAdaI~a--------NG~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
|--|-.... .---.|-.||..+.-+|..+++.-+|...+.+
T Consensus 96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~ 144 (344)
T 2gn4_A 96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDK 144 (344)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGG
T ss_pred EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 775532110 00124678999999999999998777766643
No 96
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=53.92 E-value=78 Score=31.41 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh---H---HHHh----cccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA---V---SYIM----HEVT 563 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---v---~~iM----~~Vd 563 (630)
..+++|-|.+..+..++..+ .| -+|++.+ |.+.|.... +...|+.+..+.... . ..++ .++.
T Consensus 77 ~~v~~~~g~~~al~~~~~~~--~g--d~vl~~~--p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~ 148 (364)
T 1lc5_A 77 SWILAGNGETESIFTVASGL--KP--RRAMIVT--PGFAEYGRA--LAQSGCEIRRWSLREADGWQLTDAILEALTPDLD 148 (364)
T ss_dssp GGEEEESSHHHHHHHHHHHH--CC--SEEEEEE--SCCTHHHHH--HHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCC
T ss_pred HHEEECCCHHHHHHHHHHHc--CC--CeEEEeC--CCcHHHHHH--HHHcCCeEEEEeCCcccccchhHHHHHhccCCCC
Confidence 45777777777666666655 45 3566543 666665443 344688877765321 0 1122 2445
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|++ .+--...|.++..-=--.++-+|++|++.+++
T Consensus 149 ~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 184 (364)
T 1lc5_A 149 CLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINLIL 184 (364)
T ss_dssp EEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEE
Confidence 5554 22222234444332234566778899998876
No 97
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=53.66 E-value=99 Score=30.16 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHhCCCcEEEEcc---hhHHHHhc-----cccEEEEcceeEecCCceecc-cchHHHHHHHHhCCCcEEEecccc
Q 006803 539 RLLAKGLSCTYTHI---NAVSYIMH-----EVTRVFLGASSVLSNGTTYSR-VGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 539 eL~~~GI~vTlI~D---sAv~~iM~-----~Vd~VivGAdaI~aNG~V~NK-iGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.+...|++++.... .....++. .+|+||+|.+.- +.+-.. .|+....++ ++-++||+|+-+..
T Consensus 81 ~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~---~~~~~~~~Gs~~~~vl-~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 81 YYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQH---DKLGSLIFTPLDWQLL-RKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC-----CCSCBCCHHHHHHH-HHCSSCEEEEESSC
T ss_pred HHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcC---chhhcccccccHHHHH-hcCCCCEEEecCcc
Confidence 34467998876543 33333333 589999999853 222222 577665554 66789999996543
No 98
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=53.64 E-value=34 Score=28.17 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=45.6
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH--HHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhCCC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS--YIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRV 596 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~V 596 (630)
.+|+|+|..|.. ...+...|...|+.+....+..-+ .+-. ..|.||+..+ +.++ -|--.+..+-+.+++
T Consensus 3 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~-----~g~~~~~~lr~~~~~ 74 (120)
T 3f6p_A 3 KKILVVDDEKPI-ADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNK-----DGVEVCREVRKKYDM 74 (120)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTT-----HHHHHHHHHHTTCCS
T ss_pred CeEEEEECCHHH-HHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCCC
Confidence 367777766543 233446677788877765553322 2211 4788887542 3332 354555555566789
Q ss_pred cEEEecccc
Q 006803 597 PVLICCEAY 605 (630)
Q Consensus 597 PV~V~aet~ 605 (630)
|+++++...
T Consensus 75 ~ii~~t~~~ 83 (120)
T 3f6p_A 75 PIIMLTAKD 83 (120)
T ss_dssp CEEEEEESS
T ss_pred CEEEEECCC
Confidence 999987654
No 99
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=53.41 E-value=75 Score=31.60 Aligned_cols=110 Identities=14% Similarity=0.038 Sum_probs=62.9
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHH---HHHH---hCCCcEEEEcc----hhHHHHhcc
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALL---RRLL---AKGLSCTYTHI----NAVSYIMHE 561 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La---~eL~---~~GI~vTlI~D----sAv~~iM~~ 561 (630)
.+.+||..|-++.+= .++..+.++| .+|+++.-++......+. .++. ..++.+. ..| ..+..++..
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~ 102 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFI-QGDIRNLDDCNNACAG 102 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEE-ECCTTSHHHHHHHHTT
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCccchhhHHHHhhhcccccCCceEEE-ECCCCCHHHHHHHhcC
Confidence 357899999888664 4444455555 577777654432212221 1111 2344332 233 345667777
Q ss_pred ccEEEEcceeEecC---Cc-----eecccchHHHHHHHHhCCCcEEEecccc
Q 006803 562 VTRVFLGASSVLSN---GT-----TYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 562 Vd~VivGAdaI~aN---G~-----V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
+|.||--|-..... .+ -+|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 103 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~ 154 (352)
T 1sb8_A 103 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASS 154 (352)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 88877655322100 01 1477899999999999998866655443
No 100
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=53.40 E-value=19 Score=36.53 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=56.6
Q ss_pred HHHHHHHHHhh----ccCCCEEEeecChHHHHHHHHHHHHc--CCceEEEEcCC------CCCchHHHHHHHHHhC-CCc
Q 006803 480 DKVIVRHAATK----VRDGDVLLTYGSSCVVEMILLYAHEL--GKQFRVVVVDS------RPKHEGQALLRRLLAK-GLS 546 (630)
Q Consensus 480 ~~~Ia~~a~~~----I~dgdvILT~g~S~tV~~vL~~A~e~--gk~f~ViV~ES------RP~~eG~~La~eL~~~-GI~ 546 (630)
.+.|++.|+++ |.+|++|. .++++|+..+....... .+.++|+-+.. .|......|+..|.+. |++
T Consensus 92 k~~ia~~AA~~l~~~i~~~~~ig-l~~GsT~~~~~~~L~~~~~~~~~~vv~l~ggl~~~~~~~~~~~~i~~~la~~~~~~ 170 (315)
T 2w48_A 92 LSAMGQHGALLVDRLLEPGDIIG-FSWGRAVRSLVENLPQRSQSRQVICVPIIGGPSGKLESRYHVNTLTYGAAARLKAE 170 (315)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEEE-ECCSHHHHHHHTTSCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEE-ECChHHHHHHHHhhccccCCCCcEEEEcCCCCCCCCccccCHHHHHHHHHHHHCCc
Confidence 34566666665 88888754 57888888887765332 14577776642 3444556677777765 877
Q ss_pred EEEEcc-----hh-H-HHHh------------ccccEEEEccee
Q 006803 547 CTYTHI-----NA-V-SYIM------------HEVTRVFLGASS 571 (630)
Q Consensus 547 vTlI~D-----sA-v-~~iM------------~~Vd~VivGAda 571 (630)
+.++.- +. . -.++ .++|+.|+|.-.
T Consensus 171 ~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIGg 214 (315)
T 2w48_A 171 SHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGS 214 (315)
T ss_dssp ECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCBC
T ss_pred eeEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccCc
Confidence 754421 11 1 1112 369999999873
No 101
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=53.36 E-value=1e+02 Score=30.23 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=36.6
Q ss_pred CCcEEEEcc-----hhHHHHhccccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEeccccc
Q 006803 544 GLSCTYTHI-----NAVSYIMHEVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 544 GI~vTlI~D-----sAv~~iM~~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
|++++.... ..+..+...+|+||+|.+.- |.+-. -.|+..-.+ .++.++||+|+-+.++
T Consensus 100 ~~~~~~~~~~g~~~~~I~~~a~~~DliV~G~~g~---~~~~~~~~Gs~~~~v-l~~~~~PVlvv~~~~~ 164 (309)
T 3cis_A 100 PPTVHSEIVPAAAVPTLVDMSKDAVLMVVGCLGS---GRWPGRLLGSVSSGL-LRHAHCPVVIIHDEDS 164 (309)
T ss_dssp CSCEEEEEESSCHHHHHHHHGGGEEEEEEESSCT---TCCTTCCSCHHHHHH-HHHCSSCEEEECTTCC
T ss_pred CceEEEEEecCCHHHHHHHHhcCCCEEEECCCCC---ccccccccCcHHHHH-HHhCCCCEEEEcCCcc
Confidence 888876542 22333344899999999752 22222 256655444 4556999999976653
No 102
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=53.34 E-value=39 Score=32.84 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=59.9
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEc
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivG 568 (630)
+.+||..|-++.+= .++..+.++|. ++|+++.-.|... -+..|...|+.+.. .| ..+..++..+|.||.-
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~~V~~~~R~~~~~---~~~~l~~~~~~~~~-~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGT-FKVRVVTRNPRKK---AAKELRLQGAEVVQ-GDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCS-SEEEEEESCTTSH---HHHHHHHTTCEEEE-CCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCC-ceEEEEEcCCCCH---HHHHHHHCCCEEEE-ecCCCHHHHHHHHhcCCEEEEe
Confidence 45789999888664 34444445552 5677765554432 12455566765432 33 3556667778887765
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|...-....-.|-.|+..+.-+|+..++.-+|.+.+
T Consensus 80 a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~ 115 (299)
T 2wm3_A 80 TNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGL 115 (299)
T ss_dssp CCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 432111011123446777777777778877776544
No 103
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=53.31 E-value=43 Score=28.05 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=42.3
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCC-CCCchHHHHHHHHHh------CCCcEEEEcch
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDS-RPKHEGQALLRRLLA------KGLSCTYTHIN 553 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES-RP~~eG~~La~eL~~------~GI~vTlI~Ds 553 (630)
.|.+..+...++..|......+..+.++++|- -|...|..+++.|.+ ..+++.+++..
T Consensus 37 ~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 37 EIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCC
Confidence 56666666667777776555667888888885 488899999988887 45677776653
No 104
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=53.11 E-value=1e+02 Score=30.74 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=51.8
Q ss_pred CCCEEE--eecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc
Q 006803 493 DGDVLL--TYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH 560 (630)
Q Consensus 493 dgdvIL--T~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 560 (630)
...+++ |.|-+..+..++..+..-+..-+|++. .|.+.|.... +...|+.+..+.. ..+-..+.
T Consensus 92 ~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 167 (396)
T 2q7w_A 92 DKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVS--NPSWPNHKSV--FNSAGLEVREYAYYDAENHTLDFDALINSLN 167 (396)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEE--ESCCTHHHHH--HHHTTCEEEEEECEETTTTEECHHHHHHHHT
T ss_pred cccEEEEecccchhhHHHHHHHHHHhCCCCEEEEc--CCCchhHHHH--HHHcCCceEEEecccCCCCCcCHHHHHHHHH
Confidence 345555 666665555555433221122355554 3666665443 3346777766642 12333333
Q ss_pred c---ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 E---VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~---Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+ -+++++=+.---..|.++..-=-..|+-+|+.|++.+++
T Consensus 168 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (396)
T 2q7w_A 168 EAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210 (396)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 2 134444332222334443332223577788889988776
No 105
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=52.71 E-value=1.4e+02 Score=29.23 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=54.2
Q ss_pred CCCEEEeecChHHHHHHHHHHHHc-----------CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHEL-----------GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-------- 553 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~-----------gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------- 553 (630)
...+++|.|-+..+..+|..+... +..-+|++.+ |.+.+...+ +...|+.+..+...
T Consensus 86 ~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~~~~~~d~~ 161 (397)
T 3f9t_A 86 DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPI--TAHFSFEKG--REMMDLEYIYAPIKEDYTIDEK 161 (397)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEET--TCCTHHHHH--HHHHTCEEEEECBCTTSSBCHH
T ss_pred CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECC--cchhHHHHH--HHHcCceeEEEeeCCCCcCCHH
Confidence 345677776666666666655443 1234566654 455553333 23348888887532
Q ss_pred hHHHHhcc--ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 554 AVSYIMHE--VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 554 Av~~iM~~--Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+-..+.+ ..+|++-. .-...|.+.. --.|+-+|+.||+.++|
T Consensus 162 ~l~~~i~~~~~~~v~~~~-~~nptG~~~~---l~~i~~l~~~~~~~li~ 206 (397)
T 3f9t_A 162 FVKDAVEDYDVDGIIGIA-GTTELGTIDN---IEELSKIAKENNIYIHV 206 (397)
T ss_dssp HHHHHHHHSCCCEEEEEB-SCTTTCCBCC---HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhhcCCeEEEEEC-CCCCCCCCCC---HHHHHHHHHHhCCeEEE
Confidence 23333333 44444332 2233444432 34577888999998877
No 106
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=52.68 E-value=1.8e+02 Score=30.05 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=70.1
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCC---------CCCc---------hHHHHHHHHHhC-
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDS---------RPKH---------EGQALLRRLLAK- 543 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES---------RP~~---------eG~~La~eL~~~- 543 (630)
++..+...|. +..||..|..++-..++......|.. ++.++|. |-.+ --..++..|.+.
T Consensus 26 ~G~~~q~~L~-~~~VlivG~GGlG~~ia~~La~~Gvg-~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 26 WGLEAQKRLR-ASRVLLVGLKGLGAEIAKNLILAGVK-GLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HCHHHHHHHH-TCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred hCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 4556666665 47889999999877888877777864 3333332 2211 123445777775
Q ss_pred -CCcEEEEcchh---HHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 544 -GLSCTYTHINA---VSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 544 -GI~vTlI~DsA---v~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
++.++.+...- ...++...|.||.+.|.+ ---+.+.-.|+.++||||.+
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~---------~~r~~ln~~~~~~~ip~i~~ 156 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSR---------DVIVKVDQICHKNSIKFFTG 156 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCH---------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCH---------HHHHHHHHHHHHcCCCEEEE
Confidence 57777765421 345667899998876532 23356777889999999875
No 107
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=52.68 E-value=59 Score=33.43 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=53.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HH-HHhCCCcEEEEcch--hHHHHhc-cccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RR-LLAKGLSCTYTHIN--AVSYIMH-EVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~e-L~~~GI~vTlI~Ds--Av~~iM~-~Vd~VivGA 569 (630)
++|+|-|-+..+..+|..+.. ..-+|++.+ |.+.+.... .. +...|+.+.++... .+-..+. ++..|++ .
T Consensus 73 ~~~~~~~gt~a~~~al~~l~~--~gd~vi~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i~~~~~~v~~-~ 147 (412)
T 2cb1_A 73 EAVVLASGQAATFAALLALLR--PGDEVVAAK--GLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREALSAKTRAVFV-E 147 (412)
T ss_dssp EEEEESSHHHHHHHHHHTTCC--TTCEEEEET--TCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHCCTTEEEEEE-E
T ss_pred cEEEECCHHHHHHHHHHHHhC--CCCEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHhccCCeEEEE-e
Confidence 567765555555555544433 334566654 555543322 22 56679999888643 2333333 3444444 2
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..--..|.+.. --.|+-+|++||+.++|
T Consensus 148 ~~~n~~G~~~~---l~~i~~l~~~~~~~li~ 175 (412)
T 2cb1_A 148 TVANPALLVPD---LEALATLAEEAGVALVV 175 (412)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred CCCCCCccccc---HHHHHHHHHHcCCEEEE
Confidence 22223454442 45677889999998876
No 108
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=52.20 E-value=47 Score=28.10 Aligned_cols=92 Identities=10% Similarity=0.142 Sum_probs=51.0
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh----HHHH-hccccEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA----VSYI-MHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA----v~~i-M~~Vd~VivG 568 (630)
+..|+.+|....-..+...+.+.|. +|++++..+. -...+.+.|+.+ +..|.. +..+ +.++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~--~v~~~d~~~~-----~~~~~~~~~~~~-~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEE-----KVNAYASYATHA-VIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHH-----HHHTTTTTCSEE-EECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHH-----HHHHHHHhCCEE-EEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 4568888886555566666666664 5666665431 233455566643 333321 1111 4568888775
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+..- .--...++..|+.++++.+|+
T Consensus 78 ~~~~--------~~~~~~~~~~~~~~~~~~ii~ 102 (144)
T 2hmt_A 78 IGAN--------IQASTLTTLLLKELDIPNIWV 102 (144)
T ss_dssp CCSC--------HHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCc--------hHHHHHHHHHHHHcCCCeEEE
Confidence 5321 011235777888888875443
No 109
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=52.16 E-value=56 Score=28.98 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=53.0
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHH-hCCCcEEEEcch---h-HHHH-hccccEE
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLL-AKGLSCTYTHIN---A-VSYI-MHEVTRV 565 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI~Ds---A-v~~i-M~~Vd~V 565 (630)
..++.|+.+|...+-..+...+.+.| ++|++++..|.. +..|. ..|+.+.+ .|. . +... +..+|.|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~-----~~~~~~~~g~~~~~-~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYA-----FHRLNSEFSGFTVV-GDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGG-----GGGSCTTCCSEEEE-SCTTSHHHHHTTTGGGCSEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHH-----HHHHHhcCCCcEEE-ecCCCHHHHHHcCcccCCEE
Confidence 45789999998766666666666666 478888876543 22344 45665432 331 1 1111 4567888
Q ss_pred EEcceeEecCCceecccchHHHHHHHHh-CCCcEEEe
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHA-FRVPVLIC 601 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~-~~VPV~V~ 601 (630)
|+.... ..-...++.+++. ++...+|+
T Consensus 89 i~~~~~---------~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 89 FAFTND---------DSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp EECSSC---------HHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEEeCC---------cHHHHHHHHHHHHHCCCCeEEE
Confidence 776432 1122455566776 66555544
No 110
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=52.14 E-value=1.8e+02 Score=28.47 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCEEEeecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcc--------hhHHHHhc-c
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHI--------NAVSYIMH-E 561 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~D--------sAv~~iM~-~ 561 (630)
..+++|-|.+..+..++..+.. .+..-+|++. .|.+.+... +..+...|+.+..+.. ..+-..+. +
T Consensus 62 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 139 (384)
T 1eg5_A 62 SEIFFTSCATESINWILKTVAETFEKRKRTIITT--PIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDED 139 (384)
T ss_dssp GGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEEC--TTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTT
T ss_pred CeEEEECCHHHHHHHHHHhhhhhccCCCCEEEEC--CCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCC
Confidence 4677777666666666665541 0122356654 455656533 3455677988877642 12222332 3
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCC--CcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFR--VPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~--VPV~V 600 (630)
+..|++ .+.-...|.++. --.|+-+|+.|+ +.+++
T Consensus 140 ~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~ 176 (384)
T 1eg5_A 140 TFLVSI-MAANNEVGTIQP---VEDVTRIVKKKNKETLVHV 176 (384)
T ss_dssp EEEEEE-ESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEE
T ss_pred CeEEEE-ECCCCCcccccC---HHHHHHHHHhcCCceEEEE
Confidence 344444 332233466655 256777888888 76665
No 111
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=51.81 E-value=1.2e+02 Score=26.28 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=54.9
Q ss_pred EEEeec--ChHHHHHHHHHH----HHcCCceE-EEEcCCCCCc---------------hHHHHH----HHHHhCCCc-EE
Q 006803 496 VLLTYG--SSCVVEMILLYA----HELGKQFR-VVVVDSRPKH---------------EGQALL----RRLLAKGLS-CT 548 (630)
Q Consensus 496 vILT~g--~S~tV~~vL~~A----~e~gk~f~-ViV~ESRP~~---------------eG~~La----~eL~~~GI~-vT 548 (630)
+++-+. .|......|..| ...+-.++ |+|.+..+.. ++.+.. ..+.+.|++ ++
T Consensus 18 ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~ 97 (156)
T 3fg9_A 18 ILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVE 97 (156)
T ss_dssp EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceE
Confidence 444566 676555555443 34466666 4555654321 122222 335567884 54
Q ss_pred EEc-c--hhHHHHh------ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 549 YTH-I--NAVSYIM------HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 549 lI~-D--sAv~~iM------~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
... . ...-.++ .++|+|++|++.--.-+ --.|+..-.+ .++-++||+|+
T Consensus 98 ~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~---~~~Gs~~~~v-l~~a~~PVlvV 155 (156)
T 3fg9_A 98 PLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS---KIAGAIGPRL-ARKAPISVIVV 155 (156)
T ss_dssp EEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS---SSCSCHHHHH-HHHCSSEEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc---eeecchHHHH-HHhCCCCEEEe
Confidence 332 2 2222222 25799999998532221 2467655444 56678999986
No 112
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=51.81 E-value=1.2e+02 Score=29.70 Aligned_cols=96 Identities=18% Similarity=0.115 Sum_probs=53.1
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc---c-------hhHHHHhc----
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH---I-------NAVSYIMH---- 560 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~---D-------sAv~~iM~---- 560 (630)
.+++|.|.+..+..++..+.. ..-+|++. .|.+.|...+ +...|+.+..+. | ..+-..+.
T Consensus 71 ~v~~~~g~t~a~~~~~~~~~~--~gd~vl~~--~~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 144 (371)
T 2e7j_A 71 VARVTNGAREAKFAVMHSLAK--KDAWVVMD--ENCHYSSYVA--AERAGLNIALVPKTDYPDYAITPENFAQTIEETKK 144 (371)
T ss_dssp EEEEESSHHHHHHHHHHHHCC--TTCEEEEE--TTCCHHHHHH--HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT
T ss_pred EEEEeCChHHHHHHHHHHHhC--CCCEEEEc--cCcchHHHHH--HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcc
Confidence 455665555555555555433 23355555 3555555544 566788888876 2 12333343
Q ss_pred --cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 --EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 --~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++.. |+-...-...|.+..- -.|+-+|+.||+.+++
T Consensus 145 ~~~~~~-v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~ 182 (371)
T 2e7j_A 145 RGEVVL-ALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLV 182 (371)
T ss_dssp TSCEEE-EEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEE
T ss_pred cCCeEE-EEEECCCCCCcccCCH---HHHHHHHHHcCCeEEE
Confidence 2333 3322222334555542 6778888999998887
No 113
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=51.67 E-value=58 Score=35.55 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=68.4
Q ss_pred ccCCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCC-Cch-HHHHHHHHHhCCCcEEEE-cc----hhHHHHhcc-
Q 006803 491 VRDGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRP-KHE-GQALLRRLLAKGLSCTYT-HI----NAVSYIMHE- 561 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP-~~e-G~~La~eL~~~GI~vTlI-~D----sAv~~iM~~- 561 (630)
+..+.+||..|-++-+= .+.+...+.|.. +|+++.-++ ..+ -..+..+|...|..++++ +| .++..++..
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~ 334 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAE-RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAY 334 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCc-EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcC
Confidence 34567787777777554 444445455532 455544332 222 345668898899888876 34 456666665
Q ss_pred -ccEEEEcceeEecCCce-------------ecccchHHHHHHHHhC-CCcEEEeccc
Q 006803 562 -VTRVFLGASSVLSNGTT-------------YSRVGTACVAMVAHAF-RVPVLICCEA 604 (630)
Q Consensus 562 -Vd~VivGAdaI~aNG~V-------------~NKiGT~~lAlaAk~~-~VPV~V~aet 604 (630)
+|.||-.|- +..+|.+ .|-.|+..+.-++... +..++|++.+
T Consensus 335 ~ld~VVh~AG-v~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS 391 (511)
T 2z5l_A 335 PPNAVFHTAG-ILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS 391 (511)
T ss_dssp CCSEEEECCC-CCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred CCcEEEECCc-ccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 888887663 3334422 2567888777777766 6777776554
No 114
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=51.43 E-value=51 Score=27.83 Aligned_cols=92 Identities=10% Similarity=0.088 Sum_probs=49.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEcchh-HHH----HhccccEEEE
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTHINA-VSY----IMHEVTRVFL 567 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~DsA-v~~----iM~~Vd~Viv 567 (630)
+..|+.+|....-..+...+.+.| .+|+++|..+. .+..|.+ .|+.+. ..|.. ... .+.++|.||+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~~~-----~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKD-----ICKKASAEIDALVI-NGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHH-----HHHHHHHHCSSEEE-ESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHH-----HHHHHHHhcCcEEE-EcCCCCHHHHHHcCcccCCEEEE
Confidence 356788888665555556665555 56777776542 2334443 476533 22321 111 1457899888
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCc-EEEec
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVP-VLICC 602 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VP-V~V~a 602 (630)
....- -.| ..++.+|+.+++. +++.+
T Consensus 76 ~~~~~-----~~~----~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 76 VTGKE-----EVN----LMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp CCSCH-----HHH----HHHHHHHHHTTCCCEEEEC
T ss_pred eeCCc-----hHH----HHHHHHHHHcCCCEEEEEe
Confidence 75321 111 3456677877755 44433
No 115
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=51.29 E-value=72 Score=34.45 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=70.7
Q ss_pred ccCCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCC-c-hHHHHHHHHHhCCCcEEEE-cc----hhHHHHhccc
Q 006803 491 VRDGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPK-H-EGQALLRRLLAKGLSCTYT-HI----NAVSYIMHEV 562 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~-~-eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~V 562 (630)
+..+.+||..|-++-+= .+.+...++|.. +|+++.-++. . .-..+..+|...|..++++ +| .++..++..+
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCC-EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 45677888887777553 444445555543 4555543332 2 2356678898899888776 34 4566666654
Q ss_pred ------cEEEEcceeEecCCce-------------ecccchHHHHHHHHhCCCcEEEeccc
Q 006803 563 ------TRVFLGASSVLSNGTT-------------YSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 563 ------d~VivGAdaI~aNG~V-------------~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|.||-.|- +..+|.+ .|-.|+..+.-+++..+..++|++.+
T Consensus 302 ~~~g~ld~VIh~AG-~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS 361 (486)
T 2fr1_A 302 GDDVPLSAVFHAAA-TLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSS 361 (486)
T ss_dssp CTTSCEEEEEECCC-CCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred HhcCCCcEEEECCc-cCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcC
Confidence 77776653 3334432 26678888888888888888887655
No 116
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=51.17 E-value=1.6e+02 Score=29.23 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=55.9
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHh---ccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIM---HEV 562 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM---~~V 562 (630)
..+++|.|-+..+..++..+...| -+|++.+ |.+.|..+...+...|+.+.++.. ..+-..+ .++
T Consensus 60 ~~v~~t~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 135 (392)
T 2z9v_A 60 KPVILHGEPVLGLEAAAASLISPD--DVVLNLA--SGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEI 135 (392)
T ss_dssp CCEEESSCTHHHHHHHHHHHCCTT--CCEEEEE--SSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTC
T ss_pred CEEEEeCCchHHHHHHHHHhcCCC--CEEEEec--CCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCC
Confidence 467777777766666666553333 3566554 444444333334456888877742 2333444 245
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..|++ .+.-...|.+.. --.|+-+|++||+.+++
T Consensus 136 ~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 169 (392)
T 2z9v_A 136 TVVSV-CHHDTPSGTINP---IDAIGALVSAHGAYLIV 169 (392)
T ss_dssp CEEEE-ESEEGGGTEECC---HHHHHHHHHHTTCEEEE
T ss_pred cEEEE-eccCCCCceecc---HHHHHHHHHHcCCeEEE
Confidence 55544 333333455543 34677889999998776
No 117
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=51.13 E-value=15 Score=37.20 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=69.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEe
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
-|.++.+-....+..++.+|.+.|.+.-|++.+.-+..+-.+|.....+.|+. ++-.|.++.+-+...+...-...+.
T Consensus 65 ~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~--liGPNc~Gi~~p~~~~~~~~~~~~~ 142 (288)
T 2nu8_A 65 ATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVR--MIGPNTPGVITPGECKIGIQPGHIH 142 (288)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE--EECSSCCEEEETTTEEEESSCTTSC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE--EEecCCcceecCCcceeEecccCCC
Confidence 47777788888999999999999987777777877766666777777778873 5656665555443222211112233
Q ss_pred cCC--ceecccchHHHHHH--HHhCCCcEE
Q 006803 574 SNG--TTYSRVGTACVAMV--AHAFRVPVL 599 (630)
Q Consensus 574 aNG--~V~NKiGT~~lAla--Ak~~~VPV~ 599 (630)
.-| ++++..||+..+++ +...++.|-
T Consensus 143 ~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s 172 (288)
T 2nu8_A 143 KPGKVGIVSRSGTLTYEAVKQTTDYGFGQS 172 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhcCCCEE
Confidence 334 46788899766665 556777775
No 118
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=50.95 E-value=99 Score=27.91 Aligned_cols=39 Identities=13% Similarity=-0.070 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 531 HEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 531 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
.+-..+++.+.+.|+++..||++.-+.+.+.+|.+|.-.
T Consensus 110 ~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 110 SEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVK 148 (183)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeC
Confidence 344566788899999999999988888888899988654
No 119
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=50.89 E-value=74 Score=31.35 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=56.5
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCc-----hHHHHHHHHH---hCCCcEEEEcc----hhHHHHhc-
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKH-----EGQALLRRLL---AKGLSCTYTHI----NAVSYIMH- 560 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~-----eG~~La~eL~---~~GI~vTlI~D----sAv~~iM~- 560 (630)
.+||..|-++.+= .++..+.++| .+|++++-.+.. +....+.+|. ..++.+. ..| .++..++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~-~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAG--YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE-EMDILDQGALQRLFKK 79 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT--CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEE-ECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEecCCcccccccccHHHHHHHHhccCCceEEE-ECCCCCHHHHHHHHHh
Confidence 5788888777654 4444555556 456666432211 0111223333 2344332 233 34555566
Q ss_pred -cccEEEEcceeEecC--------CceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 561 -EVTRVFLGASSVLSN--------GTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 561 -~Vd~VivGAdaI~aN--------G~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.+|.||--|-..... ---+|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~ 133 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSA 133 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcH
Confidence 466665544211000 001366899999999999998766665543
No 120
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=50.70 E-value=52 Score=32.94 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=57.6
Q ss_pred cCC-CEEEeecChHHHHHHHHHHHHcCC---ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHH
Q 006803 492 RDG-DVLLTYGSSCVVEMILLYAHELGK---QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYI 558 (630)
Q Consensus 492 ~dg-dvILT~g~S~tV~~vL~~A~e~gk---~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~i 558 (630)
... .+++|.|.+..+..++..+.+.|. +-+|++. .|.+.+...+ +...|+.+..+... .+-..
T Consensus 89 ~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~--~p~~~~~~~~--~~~~g~~~~~v~~~~~g~~~d~~~l~~~ 164 (396)
T 3jtx_A 89 DADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSP--NPFYQIYEGA--TLLGGGEIHFANCPAPSFNPDWRSISEE 164 (396)
T ss_dssp CTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEE--ESCCHHHHHH--HHHTTCEEEEEECCTTTCCCCGGGSCHH
T ss_pred CCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEc--CCCcHhHHHH--HHHcCCEEEEeecCCCCCccCHHHHHHh
Confidence 345 788887777776666665543332 1355553 4666665443 44578888777521 12122
Q ss_pred h-ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 559 M-HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 559 M-~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+ .++.+|++- .---..|.++..---..|+-+|+.|++.+++
T Consensus 165 ~~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 206 (396)
T 3jtx_A 165 VWKRTKLVFVC-SPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS 206 (396)
T ss_dssp HHHTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred hccCcEEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2 245555542 2222335444444444477788999998776
No 121
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=50.63 E-value=59 Score=27.39 Aligned_cols=81 Identities=11% Similarity=0.188 Sum_probs=49.4
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhC
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF 594 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~ 594 (630)
..+|+|+|..|.. ...|...|.+.|+.+....+.. +..+.. ..|.||+..+ +.+| .-|.-.+..+-+..
T Consensus 5 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~----~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 5 DKKILIVEDSKFQ-AKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIE--LGEG----MDGVQTALAIQQIS 77 (140)
T ss_dssp -CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESS--CSSS----CCHHHHHHHHHHHC
T ss_pred CcEEEEEeCCHHH-HHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEecc--CCCC----CCHHHHHHHHHhCC
Confidence 4578888877654 3345577788888887665532 333332 5788888653 2221 23444455555567
Q ss_pred CCcEEEeccccc
Q 006803 595 RVPVLICCEAYK 606 (630)
Q Consensus 595 ~VPV~V~aet~K 606 (630)
++||++++....
T Consensus 78 ~~~ii~ls~~~~ 89 (140)
T 3h5i_A 78 ELPVVFLTAHTE 89 (140)
T ss_dssp CCCEEEEESSSS
T ss_pred CCCEEEEECCCC
Confidence 999999976654
No 122
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=50.53 E-value=55 Score=32.36 Aligned_cols=97 Identities=20% Similarity=0.119 Sum_probs=57.7
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEc
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivG 568 (630)
+.+||..|-++.+= .++..+.++| ++|+++.-++.. .++.+.. .| ..+..++..+|.||--
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~-----------~~~~~~~-~Dl~d~~~~~~~~~~~d~vih~ 84 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG-----------TGGEEVV-GSLEDGQALSDAIMGVSAVLHL 84 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS-----------SCCSEEE-SCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC-----------CCccEEe-cCcCCHHHHHHHHhCCCEEEEC
Confidence 56788888888664 3444445555 567777655432 3444332 22 3455667778888765
Q ss_pred ceeEecCCc------eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 569 ASSVLSNGT------TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 569 AdaI~aNG~------V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|-....+.. -.|-.||..+.-+|+.+++.-+|.+.+
T Consensus 85 A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 85 GAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp CCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 532211111 136679999999999999966665554
No 123
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=50.45 E-value=81 Score=31.45 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=53.4
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----------hHHHHhc-c
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----------AVSYIMH-E 561 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~-~ 561 (630)
...+++|.|-+..+..++..+.+.| -+|++.+ |.+.|...+ +...|+.+..+... .+-..+. +
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 163 (388)
T 1j32_A 90 ADNILVTNGGKQSIFNLMLAMIEPG--DEVIIPA--PFWVSYPEM--VKLAEGTPVILPTTVETQFKVSPEQIRQAITPK 163 (388)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEES--SCCTHHHHH--HHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT
T ss_pred hhhEEEcCCHHHHHHHHHHHhcCCC--CEEEEcC--CCChhHHHH--HHHcCCEEEEecCCcccCCCCCHHHHHHhcCcC
Confidence 3467788776766666666554434 3555543 455554433 34578887777532 1222232 2
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+..|++ ...--..|.++..-=--.|+-+|+.|++.++|=
T Consensus 164 ~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 202 (388)
T 1j32_A 164 TKLLVF-NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD 202 (388)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 333433 221112243333222245677788999988773
No 124
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=50.22 E-value=69 Score=29.69 Aligned_cols=105 Identities=10% Similarity=0.064 Sum_probs=63.7
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEE
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFL 567 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~Viv 567 (630)
.+.+||..|-++.+= .+++.+.++|...+|+++.-++. .+ ..| ..++.+. ..| ..+..++..+|.||-
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~----~~-~~~-~~~~~~~-~~D~~d~~~~~~~~~~~d~vi~ 75 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ----GK-EKI-GGEADVF-IGDITDADSINPAFQGIDALVI 75 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH----HH-HHT-TCCTTEE-ECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC----ch-hhc-CCCeeEE-EecCCCHHHHHHHHcCCCEEEE
Confidence 356788888877664 44555556543577887765431 11 222 3345433 223 466777888999987
Q ss_pred cceeEecC-----------Cc----------eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 568 GASSVLSN-----------GT----------TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 568 GAdaI~aN-----------G~----------V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
-|-..... .. -+|-.|+..+.-+|+.+++.-+|...+
T Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 76 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp CCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred eccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 66432111 10 256789999999999888876665444
No 125
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=49.88 E-value=75 Score=32.52 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=53.4
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-------hhHHHHhc-----
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-------NAVSYIMH----- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~----- 560 (630)
...+++|.|.+..+..++......| -+|++.+ |.+.|.... +...|+.+..+.. ..+-..+.
T Consensus 109 ~~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~~~--~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~ 182 (425)
T 1vp4_A 109 EDNLIFTVGSQQALDLIGKLFLDDE--SYCVLDD--PAYLGAINA--FRQYLANFVVVPLEDDGMDLNVLERKLSEFDKN 182 (425)
T ss_dssp GGGEEEEEHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHHH--HHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred cccEEEeccHHHHHHHHHHHhCCCC--CEEEEeC--CCcHHHHHH--HHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhc
Confidence 3467888777776666665543333 3565543 566665433 3456877766542 22333332
Q ss_pred ----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 ----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++=...-...|.++..-=--.|+-+|+.|++.+++
T Consensus 183 ~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (425)
T 1vp4_A 183 GKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVE 226 (425)
T ss_dssp TCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2334433221111224443321123577788999998776
No 126
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=49.87 E-value=50 Score=33.02 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=55.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc--cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH--EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~ 564 (630)
.+++|.|-+..+..++..+.+.| -+|++.+ |.+.|..+...+...|+.+..+.. ..+-..+. ++..
T Consensus 87 ~v~~t~g~t~al~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 162 (393)
T 1vjo_A 87 TIAVSGTGTAAMEATIANAVEPG--DVVLIGV--AGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAI 162 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEEeCchHHHHHHHHHhccCCC--CEEEEEc--CChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceE
Confidence 46666666666666666554333 3566553 666664444555667888877752 22333333 3555
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++- ..-...|.+.. + -.|+-+|+.|++.+++
T Consensus 163 v~~~-~~~nptG~~~~-l--~~i~~l~~~~~~~li~ 194 (393)
T 1vjo_A 163 LALV-HAETSTGARQP-L--EGVGELCREFGTLLLV 194 (393)
T ss_dssp EEEE-SEETTTTEECC-C--TTHHHHHHHHTCEEEE
T ss_pred EEEe-ccCCCcceecc-H--HHHHHHHHHcCCEEEE
Confidence 5542 22233455443 2 3567778888987776
No 127
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=49.85 E-value=96 Score=31.13 Aligned_cols=101 Identities=11% Similarity=0.155 Sum_probs=52.3
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-------hhHHHHhc-----
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-------NAVSYIMH----- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~----- 560 (630)
...+++|.|.+..+..++..+.+.| -+|++.+ |.+.|.. ..+...|+.+..+.. ..+-..+.
T Consensus 98 ~~~v~~t~g~t~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~ 171 (407)
T 2zc0_A 98 PENIVITIGGTGALDLLGRVLIDPG--DVVITEN--PSYINTL--LAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAK 171 (407)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHH--HHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred cceEEEecCHHHHHHHHHHHhcCCC--CEEEEeC--CChHHHH--HHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcc
Confidence 3467777776666666666553333 3566554 6666643 334557887776642 22333343
Q ss_pred --cccEEEEcceeEecCCceecccch-HHHHHHHHhCCCcEEE
Q 006803 561 --EVTRVFLGASSVLSNGTTYSRVGT-ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 --~Vd~VivGAdaI~aNG~V~NKiGT-~~lAlaAk~~~VPV~V 600 (630)
++..|++=...-...|.++. ... -.|+-+|+.|++.+++
T Consensus 172 ~~~~~~v~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~ 213 (407)
T 2zc0_A 172 GQKVKLIYTIPTGQNPMGVTMS-MERRKALLEIASKYDLLIIE 213 (407)
T ss_dssp TCCEEEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEE
T ss_pred cCCceEEEECCCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEE
Confidence 23333222111111233322 111 2677788999998876
No 128
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=49.52 E-value=88 Score=31.33 Aligned_cols=101 Identities=8% Similarity=0.004 Sum_probs=54.1
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-----------hhHHHHhc-
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-----------NAVSYIMH- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~- 560 (630)
...+++|.|.+..+..++......| -+|++. .|.+.|...+ +...|+.+..+.. ..+-..+.
T Consensus 89 ~~~v~~t~g~~~a~~~~~~~l~~~g--d~vl~~--~p~~~~~~~~--~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~ 162 (399)
T 1c7n_A 89 TDWIINTAGVVPAVFNAVREFTKPG--DGVIII--TPVYYPFFMA--IKNQERKIIECELLEKDGYYTIDFQKLEKLSKD 162 (399)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTT--CEEEEC--SSCCTHHHHH--HHTTTCEEEECCCEEETTEEECCHHHHHHHHTC
T ss_pred hhhEEEcCCHHHHHHHHHHHhcCCC--CEEEEc--CCCcHhHHHH--HHHcCCEEEecccccCCCCEEEcHHHHHHHhcc
Confidence 3457777776666666665443323 356653 4677775543 3345766655431 12333333
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++ ...-...|.++..-=-..|+-+|+.|++.+++
T Consensus 163 ~~~~~v~~-~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 163 KNNKALLF-CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred CCCcEEEE-cCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 4445554 33222234444433234567788999998776
No 129
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=49.45 E-value=21 Score=36.37 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=70.9
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEe
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.+|.....+.|| .++-.|.++.+-+...+..+....+.
T Consensus 72 ~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~~ 149 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGA--TIIGPNCPGAITPGQAKVGIMPGHIF 149 (297)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC--EEECSSSCEEEETTTEEEESCCGGGC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCCeeEcccccceeecccCCC
Confidence 4778888888899999999999887766666776665555666677777777 46666666655554433333223333
Q ss_pred cCC--ceecccchHHHHHH--HHhCCCcEEE
Q 006803 574 SNG--TTYSRVGTACVAMV--AHAFRVPVLI 600 (630)
Q Consensus 574 aNG--~V~NKiGT~~lAla--Ak~~~VPV~V 600 (630)
.-| ++++..||+..+++ +...++.|--
T Consensus 150 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~ 180 (297)
T 2yv2_A 150 KEGGVAVVSRSGTLTYEISYMLTRQGIGQST 180 (297)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCeeE
Confidence 344 57899999987775 4557787753
No 130
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=49.43 E-value=2e+02 Score=28.19 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=51.7
Q ss_pred CEEEeecChHHHHHHHHHHH----HcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcc--------hhHHHHhcc
Q 006803 495 DVLLTYGSSCVVEMILLYAH----ELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHI--------NAVSYIMHE 561 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~----e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~D--------sAv~~iM~~ 561 (630)
.+++|.|.+..+..++..+. +.|. +|++.+ |.+.+...+ ..|...|+.+.++.. ..+-..+..
T Consensus 62 ~v~~~~g~t~a~~~~~~~l~~~~~~~gd--~Vl~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4eb5_A 62 TVVFTSGATEANNLAIIGYAMRNARKGK--HILVSA--VEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGCC--EEEEET--TCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred eEEEcCchHHHHHHHHHHHHhhccCCCC--EEEECC--CcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC
Confidence 56677665655555555443 3443 566553 344444333 445567998888752 122233332
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
-.++|+-.+.-...|.+.. --.|+-+|++|++. ++
T Consensus 138 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~ 172 (382)
T 4eb5_A 138 DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HI 172 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EE
T ss_pred CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EE
Confidence 1234433333333355544 24677788899887 44
No 131
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=49.34 E-value=59 Score=33.35 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=53.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
+.|+|-+-+..+..+|..+.+.| -+|++. .|.+.|. .+. ..+...|+.++++... .+-..+. ++..|++
T Consensus 83 ~~~~~~sGt~A~~~al~~~~~~g--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 157 (392)
T 3qhx_A 83 FGRAFSSGMAAADCALRAMLRPG--DHVVIP--DDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWV- 157 (392)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEe--CCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEE-
Confidence 45666554545555555443333 356554 3555554 333 3446689999998643 3333343 3444443
Q ss_pred ceeEe-cCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVL-SNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~-aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..+. ..|.+.. --.|+-+|+.|++.++|
T Consensus 158 -~~~~nptG~~~~---l~~i~~la~~~g~~li~ 186 (392)
T 3qhx_A 158 -ETPTNPLLSIAD---IAGIAQLGADSSAKVLV 186 (392)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred -ECCCCCCcEEec---HHHHHHHHHHcCCEEEE
Confidence 2222 2233222 35688889999998887
No 132
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=49.34 E-value=90 Score=33.21 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=53.1
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-H-HHHhCCCcEEEEcc---hhHHHHhc-cc-cEEEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-R-RLLAKGLSCTYTHI---NAVSYIMH-EV-TRVFL 567 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~-eL~~~GI~vTlI~D---sAv~~iM~-~V-d~Viv 567 (630)
+.|++-+.+..+..+|....+.| -+|++.+ |.+.|..-. . .+...|+.++++.. ..+-..+. +. .+|++
T Consensus 131 ~~v~~~sG~~Ai~~al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~l 206 (445)
T 1qgn_A 131 STLLMASGMCASTVMLLALVPAG--GHIVTTT--DCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFT 206 (445)
T ss_dssp EEEEESCHHHHHHHHHHHHSCSS--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhCCC--CEEEEcC--CCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEE
Confidence 45555433434444444333333 4677665 667664332 2 36678999999863 23333444 33 44544
Q ss_pred cceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 568 GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
...--..|.+.. --.|+-+|+.||++|+|
T Consensus 207 -e~p~NptG~v~d---l~~I~~la~~~g~~liv 235 (445)
T 1qgn_A 207 -ESPTNPFLRCVD---IELVSKLCHEKGALVCI 235 (445)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred -eCCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 221122344332 24688889999998877
No 133
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=49.14 E-value=62 Score=26.98 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--hHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA 593 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~ 593 (630)
....+|+|+|..+.. ...|...|...|+.|....+. ++..+-. ..|.|| +.+ .-|--.+..+-+.
T Consensus 16 ~~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------~~~-----~~g~~~~~~l~~~ 83 (137)
T 2pln_A 16 RGSMRVLLIEKNSVL-GGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSD-----KNALSFVSRIKEK 83 (137)
T ss_dssp TTCSEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE------ECS-----TTHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHH-HHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE------EcC-----ccHHHHHHHHHhc
Confidence 456788888876643 233456677788887765543 2222222 467777 222 2243334444333
Q ss_pred C-CCcEEEecccc
Q 006803 594 F-RVPVLICCEAY 605 (630)
Q Consensus 594 ~-~VPV~V~aet~ 605 (630)
. ++|+++++...
T Consensus 84 ~~~~~ii~ls~~~ 96 (137)
T 2pln_A 84 HSSIVVLVSSDNP 96 (137)
T ss_dssp STTSEEEEEESSC
T ss_pred CCCccEEEEeCCC
Confidence 5 89999987654
No 134
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=48.77 E-value=13 Score=39.92 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=34.3
Q ss_pred HHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccc
Q 006803 555 VSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 555 v~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf 607 (630)
+-..++.+|+||.|=-++-. ....---.+.+|-.|+.|+|||+++|.+..-
T Consensus 281 l~~~l~~ADLVITGEG~~D~--Qtl~GK~p~gVa~~A~~~~vPviaiaG~~~~ 331 (383)
T 3cwc_A 281 LEACLADADLVITGEGRIDS--QTIHGKVPIGVANIAKRYNKPVIGIAGSLTA 331 (383)
T ss_dssp HHHHHHHCSEEEECCEESCC------CHHHHHHHHHHHHTTCCEEEEEEECC-
T ss_pred hHhhhcCCCEEEECCCCCcC--cCCCCcHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 34556789999999744421 1222222466888999999999999988753
No 135
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=48.71 E-value=15 Score=32.65 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=50.4
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---hHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
.++.+|.|+|-.|... ..|...|.+.|..|+.+..+ |+..+-. ..|.||+ |-.+.+++ | +.++-.-+
T Consensus 6 ~r~~rILiVdD~~~~~-~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll--Di~mP~~~-----G-~el~~~lr 76 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIA-MLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII--DVNLDGEP-----S-YPVADILA 76 (123)
T ss_dssp CCCCCEEEESSSTTTS-HHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE--CSSSSSCC-----S-HHHHHHHH
T ss_pred CCCCEEEEEeCCHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE--ecCCCCCC-----H-HHHHHHHH
Confidence 4678999999888763 23457788889987654433 2333322 5888887 55555432 3 34454556
Q ss_pred hCCCcEEEecc
Q 006803 593 AFRVPVLICCE 603 (630)
Q Consensus 593 ~~~VPV~V~ae 603 (630)
..++||++++.
T Consensus 77 ~~~ipvI~lTa 87 (123)
T 2lpm_A 77 ERNVPFIFATG 87 (123)
T ss_dssp HTCCSSCCBCT
T ss_pred cCCCCEEEEec
Confidence 68999988865
No 136
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=48.67 E-value=1.2e+02 Score=29.74 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=70.1
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCC---------CCC---------chHHHHHHHHHhC-
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDS---------RPK---------HEGQALLRRLLAK- 543 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES---------RP~---------~eG~~La~eL~~~- 543 (630)
++..+.+.|. +..||..|..++-..++......|.. ++.++|. |-. .-...++..|.+.
T Consensus 18 ~g~~~q~~l~-~~~VlvvG~GglG~~va~~La~~Gvg-~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 18 IALDGQQKLL-DSQVLIIGLGGLGTPAALYLAGAGVG-TLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp THHHHHHHHH-TCEEEEECCSTTHHHHHHHHHHTTCS-EEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHh-cCcEEEEccCHHHHHHHHHHHHcCCC-eEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 4555566665 47899999888777777777777754 3444332 221 1233455666664
Q ss_pred -CCcEEEEc----chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 544 -GLSCTYTH----INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 544 -GI~vTlI~----DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
++.++.+. +..+..++...|.||.+.|..- --+.+.-.|+.+++|++.+.
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMA---------TRQEINAACVALNTPLITAS 150 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHH---------HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHhCCCEEEEe
Confidence 56666654 2345667788999988766432 24577778888999988653
No 137
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=48.41 E-value=93 Score=30.71 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=56.7
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc--cccEE
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH--EVTRV 565 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~V 565 (630)
+++|.|-+..+..++..+.+. .-+|++.+ +.+-|..+...+...|+.+..+.. ..+-..+. ++..|
T Consensus 77 v~~~~gg~~al~~~~~~~~~~--gd~vl~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v 152 (393)
T 3kgw_A 77 LVVSGSGHCAMETALFNLLEP--GDSFLTGT--NGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLL 152 (393)
T ss_dssp EEESCCTTTHHHHHHHHHCCT--TCEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEE
T ss_pred EEEeCCcHHHHHHHHHhcCCC--CCEEEEEe--CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEE
Confidence 667777777776666655433 34566653 444455555666778988877752 23333343 45555
Q ss_pred EEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++- ..=-..|.+.. --.|+-+|+.|++.+++
T Consensus 153 ~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 183 (393)
T 3kgw_A 153 FLV-HGESSTGVVQP---LDGFGELCHRYQCLLLV 183 (393)
T ss_dssp EEE-SEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEe-ccCCcchhhcc---HHHHHHHHHHcCCEEEE
Confidence 443 22223354443 23577789999998877
No 138
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=48.39 E-value=1.6e+02 Score=26.85 Aligned_cols=35 Identities=0% Similarity=-0.217 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCcEEEEcchhHHHHhcc---ccEEEEc
Q 006803 534 QALLRRLLAKGLSCTYTHINAVSYIMHE---VTRVFLG 568 (630)
Q Consensus 534 ~~La~eL~~~GI~vTlI~DsAv~~iM~~---Vd~VivG 568 (630)
.++++.+.+.|+++..||++.-+.+.+. +|.+|.-
T Consensus 126 i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~ 163 (196)
T 2yva_A 126 VKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRI 163 (196)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEEC
T ss_pred HHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEe
Confidence 4556888899999999999877777766 8988763
No 139
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=48.29 E-value=58 Score=33.49 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=53.3
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHH--HHHhCCCcEEEEcc--hhHHHHhc-cccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLR--RLLAKGLSCTYTHI--NAVSYIMH-EVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~--eL~~~GI~vTlI~D--sAv~~iM~-~Vd~VivGA 569 (630)
+.|++-+.+..+..+|. ..+.| -+|++.+ |.+.|..... .+...|+.++++.. ..+-..+. ++.+|++ .
T Consensus 72 ~~i~~~sGt~a~~~al~-~~~~g--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~l~~~i~~~t~lv~~-~ 145 (393)
T 1n8p_A 72 YGLAFSSGSATTATILQ-SLPQG--SHAVSIG--DVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWI-E 145 (393)
T ss_dssp EEEEESCHHHHHHHHHH-TSCSS--CEEEEES--SCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEE-C
T ss_pred cEEEECChHHHHHHHHH-HcCCC--CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEeCCChHHHHHhcccCceEEEE-E
Confidence 45555444545555555 43333 3666665 6776653332 45667999999863 23334443 3334443 2
Q ss_pred eeEecCCceecccchHHHHHHHHhC----CCcEEE
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAF----RVPVLI 600 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~----~VPV~V 600 (630)
..--..|.+.. --.|+-+|+.| +++|+|
T Consensus 146 ~~~nptG~~~~---l~~i~~la~~~~~~~~~~liv 177 (393)
T 1n8p_A 146 TPTNPTLKVTD---IQKVADLIKKHAAGQDVILVV 177 (393)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEE
T ss_pred CCCCCcceecC---HHHHHHHHHHhCCCCCCEEEE
Confidence 22223344442 34577788888 998877
No 140
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=48.19 E-value=57 Score=34.62 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=55.0
Q ss_pred EEeecChHHHHHHHHHHHHcCC------ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhccc
Q 006803 497 LLTYGSSCVVEMILLYAHELGK------QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMHEV 562 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk------~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~V 562 (630)
++|.|-+..+..+|..+...|. +-+|++. .|.+.+.. ..+...|+.+..+.- .++-..+.+-
T Consensus 164 ~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~--~~~~~~~~--~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~ 239 (514)
T 3mad_A 164 TVTSGGTESLLLAMKTYRDWARATKGITAPEAVVP--VSAHAAFD--KAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239 (514)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEE--TTSCTHHH--HHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEe--CccchHHH--HHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccC
Confidence 7777766666666666554331 1356664 34555533 233344888888752 2333444432
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.++|+...--...|.+.. --.|+-+|+.||++++|=+
T Consensus 240 ~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 240 TVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp EEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred CEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 344443332223455543 2567888999999988743
No 141
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=47.86 E-value=36 Score=34.09 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=64.6
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEccee
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 571 (630)
..+..|..+|+-.-+...|.. + ++|+|+|-.|..-|. + ...|....++++++|.||+-..+
T Consensus 114 ~~~~kV~vIG~~p~l~~~l~~-----~-~~v~V~d~~p~~~~~---------~----~~~~~~e~~~l~~~D~v~iTGsT 174 (249)
T 3npg_A 114 DEIKRIAIIGNMPPVVRTLKE-----K-YEVYVFERNMKLWDR---------D----TYSDTLEYHILPEVDGIIASASC 174 (249)
T ss_dssp SCCSEEEEESCCHHHHHHHTT-----T-SEEEEECCSGGGCCS---------S----EECGGGHHHHGGGCSEEEEETTH
T ss_pred cCCCEEEEECCCHHHHHHHhc-----c-CCEEEEECCCcccCC---------C----CCChhHHHhhhccCCEEEEEeee
Confidence 456899999998765544432 3 899999999986432 1 13575555799999999997666
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEEEecccccccccccC
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQL 613 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ 613 (630)
+. ||++ -..+.++ .....++++.||.-+.+.+-.
T Consensus 175 lv-N~Ti-----~~lL~~~--~~~~~vvl~GPS~~~~P~~~~ 208 (249)
T 3npg_A 175 IV-NGTL-----DMILDRA--KKAKLIVITGPTGQLLPEFLK 208 (249)
T ss_dssp HH-HTCH-----HHHHHHC--SSCSEEEEESGGGCSCGGGGT
T ss_pred ec-cCCH-----HHHHHhC--cccCeEEEEecCchhhHHHHh
Confidence 55 4433 2223222 345578999999988887653
No 142
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=47.85 E-value=69 Score=26.41 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=39.1
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCC-CCCchHHHHHHHHHhC----CCcEEEEcch
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDS-RPKHEGQALLRRLLAK----GLSCTYTHIN 553 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES-RP~~eG~~La~eL~~~----GI~vTlI~Ds 553 (630)
.|..|.+..+...+...+.. ..+.++++|. -|...|..+++.|.+. ++++.+++..
T Consensus 26 ~~~~v~~~~~~~~a~~~l~~-----~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQALA-----HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp TTSEEEEESSHHHHHHHHHH-----SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred CCcEEEEECCHHHHHHHHhc-----CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 45566666666555544433 3578888875 4788999999999875 6788887764
No 143
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=47.62 E-value=1.1e+02 Score=31.04 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=53.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh-------HHHH---h-ccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA-------VSYI---M-HEV 562 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-------v~~i---M-~~V 562 (630)
..+++|.|.+..+..++..+...| -+|++.+ |.+.|..... ...|+.+..+.... +..+ + .++
T Consensus 100 ~~v~~t~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 173 (412)
T 2x5d_A 100 SEAIVTIGSKEGLAHLMLATLDHG--DTILVPN--PSYPIHIYGA--VIAGAQVRSVPLVPGIDFFNELERAIRESIPKP 173 (412)
T ss_dssp TSEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHHHH--HHHTCEEEEEECSTTSCHHHHHHHHHHTEESCC
T ss_pred cCEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHHHH--HHcCCEEEEeecCCccCCCCCHHHHHHhcccCc
Confidence 467788777666666665543333 3566554 6666655443 34577777664321 1122 1 135
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..|++ ++.--..|.++..----.|+-+|+.|++.+++
T Consensus 174 ~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (412)
T 2x5d_A 174 RMMIL-GFPSNPTAQCVELDFFERVVALAKQYDVMVVH 210 (412)
T ss_dssp SEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred eEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 55655 22212234443321224577788899998776
No 144
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=47.40 E-value=65 Score=32.87 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=51.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHH-HHhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRR-LLAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~e-L~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
+.|++-+-+..+..+|..+.+.| -+|++.+ |.+.|... ... +...|+.+.++... .+-..+. ++..|++
T Consensus 76 ~~i~~~sG~~ai~~~~~~~~~~g--d~vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 150 (389)
T 3acz_A 76 GSAAFGSGMGAISSSTLAFLQKG--DHLIAGD--TLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYL- 150 (389)
T ss_dssp EEEEESSHHHHHHHHHTTTCCTT--CEEEEES--SCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEE-
T ss_pred eEEEeCCHHHHHHHHHHHHhCCC--CEEEEeC--CCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEE-
Confidence 45555443333333333332233 3666655 56666433 333 57789999998642 2333333 3344444
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
...--..|.+.. --.|+-+|+.|++.++|
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~liv 179 (389)
T 3acz_A 151 ESPANPTCKVSD---IKGIAVVCHERGARLVV 179 (389)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 222222344443 35678888999998876
No 145
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=46.87 E-value=1e+02 Score=30.85 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=53.2
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-----------hhHHHHhc-
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-----------NAVSYIMH- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~- 560 (630)
...+++|.|.+..+..++..+...| -+|++. .|.+.|...+ +...|+.+..+.. ..+-..+.
T Consensus 87 ~~~v~~t~g~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~ 160 (390)
T 1d2f_A 87 SQTVVYGPSVIYMVSELIRQWSETG--EGVVIH--TPAYDAFYKA--IEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK 160 (390)
T ss_dssp GGGEEEESCHHHHHHHHHHHSSCTT--CEEEEE--ESCCHHHHHH--HHHTTCEEEEEECEECSSSEECCHHHHHHHHTS
T ss_pred HHHEEEcCCHHHHHHHHHHHhcCCC--CEEEEc--CCCcHHHHHH--HHHCCCEEEEeecccCCCccccCHHHHHHHhcc
Confidence 3457777776666666665543333 355553 3666665443 3346776665531 12333333
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++ ..--...|.++..-=-..|+-+|+.||+.+++
T Consensus 161 ~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 161 PECKIMLL-CSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp TTEEEEEE-ESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3445544 22212234443322123567788999998876
No 146
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=46.23 E-value=1.7e+02 Score=26.57 Aligned_cols=38 Identities=18% Similarity=0.065 Sum_probs=29.4
Q ss_pred chHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 531 HEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 531 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
.+-..+++.+.+.|+++..||++.-+.+.+.+|.+|.-
T Consensus 130 ~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~ 167 (198)
T 2xbl_A 130 PNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEV 167 (198)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEe
Confidence 34456668888999999999998777777778988743
No 147
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=46.15 E-value=1.1e+02 Score=30.48 Aligned_cols=101 Identities=17% Similarity=0.101 Sum_probs=50.6
Q ss_pred CCEEE--eecChHHHHHHHHHHHH--cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHh
Q 006803 494 GDVLL--TYGSSCVVEMILLYAHE--LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIM 559 (630)
Q Consensus 494 gdvIL--T~g~S~tV~~vL~~A~e--~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM 559 (630)
..+++ |.|-+..+..++..+.. .|. +|++. .|.+.|.... +...|..+..+.. ..+-..+
T Consensus 90 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd--~vl~~--~p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 163 (394)
T 2ay1_A 90 ETTATLATVGGTGALRQALELARMANPDL--RVFVS--DPTWPNHVSI--MNFMGLPVQTYRYFDAETRGVDFEGMKADL 163 (394)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEE--ESCCHHHHHH--HHHHTCCEEEEECEETTTTEECHHHHHHHH
T ss_pred ccEEEEecCCchhHHHHHHHHHHhcCCCC--EEEEc--CCCChhHHHH--HHHcCCceEEEecccccCCccCHHHHHHHH
Confidence 45666 77766666665554433 343 45554 3677665443 3335776666542 1233333
Q ss_pred cc---ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 560 HE---VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 560 ~~---Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+ .+++++=...--..|.++..-=-..|+-+|+.|++.+++
T Consensus 164 ~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 207 (394)
T 2ay1_A 164 AAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLI 207 (394)
T ss_dssp HTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 32 245444232222334333221122466678888887775
No 148
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=46.13 E-value=53 Score=34.45 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=42.1
Q ss_pred eEEEEcCCCCCchHHHHH--HHHHhCCCcEEEEcc---hhHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh
Q 006803 520 FRVVVVDSRPKHEGQALL--RRLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA 593 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~ 593 (630)
-+|++.+ |.+.|..-. ..|...|+.++++.. ..+-..+. +..+|++ ...--..|.+. . --.|+-+|+.
T Consensus 122 d~Vi~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~-e~~~NptG~v~-d--l~~I~~la~~ 195 (415)
T 2fq6_A 122 DHVLMTN--TAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFL-ESPGSITMEVH-D--VPAIVAAVRS 195 (415)
T ss_dssp CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEE-ESSCTTTCCCC-C--HHHHHHHHHH
T ss_pred CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEE-ECCCCCCCEee-c--HHHHHHHHHh
Confidence 4677664 566665433 235678999999853 23333333 2333433 11111224333 2 2568888999
Q ss_pred --CCCcEEE
Q 006803 594 --FRVPVLI 600 (630)
Q Consensus 594 --~~VPV~V 600 (630)
||++|+|
T Consensus 196 ~~~g~~liv 204 (415)
T 2fq6_A 196 VVPDAIIMI 204 (415)
T ss_dssp HCTTCEEEE
T ss_pred hcCCCEEEE
Confidence 9999887
No 149
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=46.05 E-value=1.3e+02 Score=29.60 Aligned_cols=99 Identities=8% Similarity=0.007 Sum_probs=55.0
Q ss_pred CCEEEeecChHHHHHHHHHHH---HcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---------hhHHHHhc-
Q 006803 494 GDVLLTYGSSCVVEMILLYAH---ELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---------NAVSYIMH- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~---e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------sAv~~iM~- 560 (630)
..+++|.|.+..+..++..+. +.| -+|++.++ |.+.+. +...+...|+.+..+.. ..+-..+.
T Consensus 60 ~~v~~~~g~t~al~~~~~~~~~~~~~g--d~vlv~~~-~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 135 (385)
T 2bkw_A 60 QPFVLAGSGTLGWDIFASNFILSKAPN--KNVLVVST-GTFSDR-FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ 135 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHSCTTCSC--CEEEEECS-SHHHHH-HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred ceEEEcCchHHHHHHHHHHHhccCCCC--CeEEEEcC-CcchHH-HHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence 356777777777666665543 333 36766654 333222 23445667988877752 12333333
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhC--CCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF--RVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~--~VPV~V 600 (630)
++..|++- +.-...|.+.. --.|+-+|+.| |+.+++
T Consensus 136 ~~~~~v~~~-~~~nptG~~~~---l~~i~~~~~~~~~~~~li~ 174 (385)
T 2bkw_A 136 NSYGAVTVT-HVDTSTAVLSD---LKAISQAIKQTSPETFFVV 174 (385)
T ss_dssp SCCSEEEEE-SEETTTTEECC---HHHHHHHHHHHCTTSEEEE
T ss_pred CCCCEEEEE-ccCCCcCeEcC---HHHHHHHHHhhCCCCEEEE
Confidence 35555542 22223355543 34677788888 887776
No 150
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=45.93 E-value=57 Score=27.09 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE-Ecch--hHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY-THIN--AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl-I~Ds--Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
....+|+|+|..+.. ...+...|...|+.+.. ..+. ++.++-. ..|.||+..+- .+ ..-|.-.+..+-+
T Consensus 7 ~~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~--~~----~~~g~~~~~~l~~ 79 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLA-AATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML--CG----ALDGVETAARLAA 79 (140)
T ss_dssp -CCCEEEEECCBHHH-HHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--CS----SSCHHHHHHHHHH
T ss_pred CCCceEEEEECCHHH-HHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCC--CC----CCCHHHHHHHHHh
Confidence 356788888877643 33345667777888875 4432 2233322 57888887542 11 1123333444443
Q ss_pred hCCCcEEEeccccc
Q 006803 593 AFRVPVLICCEAYK 606 (630)
Q Consensus 593 ~~~VPV~V~aet~K 606 (630)
..++|+++++....
T Consensus 80 ~~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 80 GCNLPIIFITSSQD 93 (140)
T ss_dssp HSCCCEEEEECCCC
T ss_pred CCCCCEEEEecCCC
Confidence 47899999876543
No 151
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=45.86 E-value=1.3e+02 Score=30.63 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=52.4
Q ss_pred CEEEeecChHHHHHHHH--HHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc--
Q 006803 495 DVLLTYGSSCVVEMILL--YAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH-- 560 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~--~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-- 560 (630)
.+++|.|.+..+..+++ .....| -+|+|.+ |.+.+... .+...|+.+..+.- ..+-..+.
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~g--d~Vlv~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 192 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPK--AKVAISD--PSWENHRA--LFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY 192 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTT--CCEEEEE--SCCHHHHH--HHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred EEEECCccHHHHHHHHHHHHHhCCC--CEEEEeC--CCcHhHHH--HHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC
Confidence 57888887777666543 223333 3455543 67766533 33446777766642 12333333
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.-+++++=...--..|.+++.---..|+-+|+.|++.+++
T Consensus 193 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 233 (420)
T 4f4e_A 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFL 233 (420)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 1233433222222334444433344677788888887776
No 152
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=45.84 E-value=21 Score=34.86 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=50.5
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh---HHHHhccccEEEEcceeEecCCce-eccc-chHHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA---VSYIMHEVTRVFLGASSVLSNGTT-YSRV-GTACVAMVA 591 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---v~~iM~~Vd~VivGAdaI~aNG~V-~NKi-GT~~lAlaA 591 (630)
....+|.|++-.|...-..+...|...|++++++.-.. +...+..+|.+||.---....+.. ...+ +...+.--|
T Consensus 10 ~~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~ 89 (239)
T 1o1y_A 10 HHHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEI 89 (239)
T ss_dssp CCCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHH
Confidence 45678999998887665567789999999998765332 122345788887732111111111 1111 222222223
Q ss_pred HhCCCcEEEecc
Q 006803 592 HAFRVPVLICCE 603 (630)
Q Consensus 592 k~~~VPV~V~ae 603 (630)
...++|++-+|=
T Consensus 90 ~~~~~PiLGIC~ 101 (239)
T 1o1y_A 90 LKKEIPFLGICL 101 (239)
T ss_dssp HHHTCCEEEETH
T ss_pred HHCCCCEEEEch
Confidence 356899997764
No 153
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=45.54 E-value=70 Score=26.94 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=45.9
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhCC
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFR 595 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~ 595 (630)
..+|+|+|..|.. ...|...|...|+.+....+.. +.++-. ..|.||+..+ +.+. -|.-.+..+-....
T Consensus 4 ~~~Ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~-----~g~~l~~~l~~~~~ 75 (136)
T 2qzj_A 4 QTKILIIDGDKDN-CQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDG-----DGWTLCKKIRNVTT 75 (136)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTE-----EHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHccCCC
Confidence 4578888876643 3344566777788877655432 222222 4788888543 3321 24333444444458
Q ss_pred CcEEEecccc
Q 006803 596 VPVLICCEAY 605 (630)
Q Consensus 596 VPV~V~aet~ 605 (630)
+|+++++...
T Consensus 76 ~~ii~ls~~~ 85 (136)
T 2qzj_A 76 CPIVYMTYIN 85 (136)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEEcCC
Confidence 9999987654
No 154
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=45.52 E-value=1.3e+02 Score=30.33 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=52.9
Q ss_pred CCCEEE--eecChHHHHHHHHH--HHHcCC---ceEEEEcCCCCCchHHHHHHHHHhCCCc-EEEEcc----------hh
Q 006803 493 DGDVLL--TYGSSCVVEMILLY--AHELGK---QFRVVVVDSRPKHEGQALLRRLLAKGLS-CTYTHI----------NA 554 (630)
Q Consensus 493 dgdvIL--T~g~S~tV~~vL~~--A~e~gk---~f~ViV~ESRP~~eG~~La~eL~~~GI~-vTlI~D----------sA 554 (630)
...+++ |.|-+..+..+++- ....|+ .-+|++.+ |.+.|.... +...|+. +..+.. ..
T Consensus 97 ~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~--p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 97 EKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSS--PTWENHNGV--FTTAGFKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEE--SCCTHHHHH--HHHTTCSCEEEEECEETTTTEECHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcC--CCcHHHHHH--HHHcCCceeEEEeeecCCCCccCHHH
Confidence 456777 87777766666432 223341 03466553 666665433 3446777 666542 12
Q ss_pred HHHHhcc---ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 555 VSYIMHE---VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 555 v~~iM~~---Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+-..+.+ -+++++=+..-...|.++..-=--.|+-+|+.|++.+++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 221 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF 221 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3233332 123433233333334433332222577788899997776
No 155
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=45.51 E-value=40 Score=36.42 Aligned_cols=95 Identities=9% Similarity=0.061 Sum_probs=52.1
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHHc---CCceEEEEcCC-CC----------------CchHHHHHHHHHhCC
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHEL---GKQFRVVVVDS-RP----------------KHEGQALLRRLLAKG 544 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~---gk~f~ViV~ES-RP----------------~~eG~~La~eL~~~G 544 (630)
+.++.+|++|++|.+++..+.-..++....+. -+.++++..-+ .| ++.|-. .+++.+.|
T Consensus 19 eEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~G 97 (434)
T 3eh7_A 19 EEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGN-SRKAVEEN 97 (434)
T ss_dssp HHHHTTCCTTCEEEECCGGGCCHHHHHHHHHSTTTC--CEEECCBCTTCC------------------------------
T ss_pred HHHHHhCCCcCEEEECCccCCHHHHHHHHHHhHhhcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHH-HHHHHHCC
Confidence 34667899999999998776444444443332 24566654321 11 112211 13333344
Q ss_pred -CcEEEEcchhHHHHhc----cccEEEEcceeEecCCceec
Q 006803 545 -LSCTYTHINAVSYIMH----EVTRVFLGASSVLSNGTTYS 580 (630)
Q Consensus 545 -I~vTlI~DsAv~~iM~----~Vd~VivGAdaI~aNG~V~N 580 (630)
+.+.-+..+.+..++. .+|..|+.+...-.+|.+.-
T Consensus 98 ~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~ 138 (434)
T 3eh7_A 98 RADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSF 138 (434)
T ss_dssp CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEEC
T ss_pred CccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEe
Confidence 3333345566766665 58999999999999999864
No 156
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=45.47 E-value=42 Score=36.53 Aligned_cols=95 Identities=16% Similarity=0.134 Sum_probs=58.0
Q ss_pred HHHHhhccCCCEEEeecChHH---HHHHHHHHHHcCCceEEEEcCC-C------C----------CchHHHHHHHHHhCC
Q 006803 485 RHAATKVRDGDVLLTYGSSCV---VEMILLYAHELGKQFRVVVVDS-R------P----------KHEGQALLRRLLAKG 544 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~t---V~~vL~~A~e~gk~f~ViV~ES-R------P----------~~eG~~La~eL~~~G 544 (630)
+.|+.+|++|++|-.++..+. +...|.+..++-+.++++..=+ . | ++-|.. .+++.+.|
T Consensus 15 eeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~~l~~v~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~G 93 (448)
T 3gk7_A 15 DEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPS-TRGSIAEG 93 (448)
T ss_dssp HHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGGGCSSEEEEESSCSSCCGGGSGGGTTTEEEEESSCCTT-THHHHHHT
T ss_pred HHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHHhhcCeEEEEeeccCCccccChHHhCcEEEecCcCCHH-HHhHHhCC
Confidence 456779999999999886663 3333332222234677765411 1 1 222222 24444555
Q ss_pred -CcEEEEcchhHHHHhc----cccEEEEcceeEecCCceec
Q 006803 545 -LSCTYTHINAVSYIMH----EVTRVFLGASSVLSNGTTYS 580 (630)
Q Consensus 545 -I~vTlI~DsAv~~iM~----~Vd~VivGAdaI~aNG~V~N 580 (630)
+..+-+..+.+..++. .+|..|+.+...-.+|.+.-
T Consensus 94 ~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~ 134 (448)
T 3gk7_A 94 HGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCV 134 (448)
T ss_dssp SSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEEC
T ss_pred CeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEe
Confidence 3333344577777776 48999999999999998863
No 157
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=45.30 E-value=1.8e+02 Score=29.05 Aligned_cols=96 Identities=8% Similarity=-0.010 Sum_probs=50.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--c-hhHHHHhc-------cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--I-NAVSYIMH-------EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~-------~Vd~ 564 (630)
+.|++-+-|..+..++..+. ++.-.|++.+ |.+.+. ...+...|+.+..+. | ..+-..+. ++..
T Consensus 107 ~~i~~~sGs~a~~~~~~~~~--~~gd~v~~~~--~~~~~~--~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 107 DAILYSSCFDANGGLFETLL--GAEDAIISDA--LNHASI--IDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp EEEEESCHHHHHHTTHHHHC--CTTCEEEEET--TCCHHH--HHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEE
T ss_pred cEEEeCChHHHHHHHHHHHc--CCCCEEEEcc--hhHHHH--HHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceE
Confidence 45555333444444444332 2333555543 444332 234567898888875 2 23333443 3445
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++ ...--..|.+.. --.|+-+|+.|++.+++
T Consensus 181 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 212 (401)
T 1fc4_A 181 IAT-DGVFSMDGVIAN---LKGVCDLADKYDALVMV 212 (401)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHTTEEEEE
T ss_pred EEE-eCCcCCCCCCCC---HHHHHHHHHHcCCEEEE
Confidence 554 333334565555 46678889999987765
No 158
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=45.29 E-value=1.9e+02 Score=28.69 Aligned_cols=99 Identities=13% Similarity=-0.024 Sum_probs=53.2
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-h-------hHHHHh-ccccEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-N-------AVSYIM-HEVTRV 565 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-s-------Av~~iM-~~Vd~V 565 (630)
.+++|-|.+..+..++....+.| -+|++. .|.+.|.... +...|+.+..+.. . .+-..+ .++..|
T Consensus 89 ~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 162 (376)
T 2dou_A 89 EALALIGSQEGLAHLLLALTEPE--DLLLLP--EVAYPSYFGA--ARVASLRTFLIPLREDGLADLKAVPEGVWREAKVL 162 (376)
T ss_dssp SEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHHHH--HHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEE
T ss_pred cEEEcCCcHHHHHHHHHHhcCCC--CEEEEC--CCCcHhHHHH--HHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEE
Confidence 67788776666666665543333 356654 4677775443 3446888777752 1 111111 244555
Q ss_pred EEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++. .--...|.++..-=--.++-+|+.|++.+++
T Consensus 163 ~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 196 (376)
T 2dou_A 163 LLN-YPNNPTGAVADWGYFEEALGLARKHGLWLIH 196 (376)
T ss_dssp EEC-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEC-CCCCCcCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 553 2111224333321123567788999998776
No 159
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=45.16 E-value=22 Score=34.46 Aligned_cols=99 Identities=8% Similarity=0.018 Sum_probs=51.4
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--c-hhHHHHhcc-ccEEEEcc
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--I-NAVSYIMHE-VTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~-Vd~VivGA 569 (630)
.+||..| ++.+= .++..+.++| ++|+++.-++.. ...++.+.... | ..+..++.. +|.||--|
T Consensus 4 ~~ilVtG-aG~iG~~l~~~L~~~g--~~V~~~~r~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 4 SKILIAG-CGDLGLELARRLTAQG--HEVTGLRRSAQP---------MPAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTT--CCEEEEECTTSC---------CCTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CcEEEEC-CCHHHHHHHHHHHHCC--CEEEEEeCCccc---------cccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 3566667 46543 3333444444 455555433322 02344332211 1 233344554 78777654
Q ss_pred eeEecC---CceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 570 SSVLSN---GTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 570 daI~aN---G~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
-....+ -.-+|-.||..+.-+|+..++.-+|.+.+.
T Consensus 72 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~ 110 (286)
T 3gpi_A 72 AASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSST 110 (286)
T ss_dssp HHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEccc
Confidence 211111 112477899999999999998877765553
No 160
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=45.08 E-value=2.3e+02 Score=27.74 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=55.1
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHh---ccccE
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIM---HEVTR 564 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM---~~Vd~ 564 (630)
+++|.|-+..+..++..+.+.| -+|++. .|.+.|..+...+...|+.+..+.. ..+-..+ +++..
T Consensus 74 v~~~~g~t~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 149 (386)
T 2dr1_A 74 LLVPSSGTGIMEASIRNGVSKG--GKVLVT--IIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEA 149 (386)
T ss_dssp EEESSCHHHHHHHHHHHHSCTT--CEEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCE
T ss_pred EEEeCChHHHHHHHHHHhhcCC--CeEEEE--cCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcE
Confidence 5566655555555555443333 356665 3566664444555667888776642 2333344 24555
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++- ..-...|.+.. --.|+-+|+.||+.+++
T Consensus 150 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 181 (386)
T 2dr1_A 150 VTIT-YNETSTGVLNP---LPELAKVAKEHDKLVFV 181 (386)
T ss_dssp EEEE-SEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEE-eecCCcchhCC---HHHHHHHHHHcCCeEEE
Confidence 5553 33333455543 36677888999998876
No 161
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=44.98 E-value=27 Score=33.79 Aligned_cols=101 Identities=10% Similarity=-0.021 Sum_probs=58.3
Q ss_pred EEEeecChHHHHH-HHHHHHHc-CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--c-hhHHHHhccccEEEEcce
Q 006803 496 VLLTYGSSCVVEM-ILLYAHEL-GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--I-NAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 496 vILT~g~S~tV~~-vL~~A~e~-gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGAd 570 (630)
+||..|-++.+=. ++..+.+. |. +|+++.-+|.. +..|...|+.+.... | ..+..++..+|.||.-|-
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~-----~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEK-----VPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGG-----SCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHH-----HHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788888776643 33443343 44 45554333321 122344565443321 2 456667778888876553
Q ss_pred eEecCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 571 aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.. +....|-.||..+.-+|+..++.-+|...++
T Consensus 75 ~~--~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~ 107 (289)
T 3e48_A 75 II--HPSFKRIPEVENLVYAAKQSGVAHIIFIGYY 107 (289)
T ss_dssp CC--CSHHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CC--ccchhhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 21 1122356788899999999999877776664
No 162
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=44.96 E-value=54 Score=31.40 Aligned_cols=101 Identities=10% Similarity=0.047 Sum_probs=59.9
Q ss_pred EEEeecChHHHHHHH-HHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEcce
Q 006803 496 VLLTYGSSCVVEMIL-LYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 496 vILT~g~S~tV~~vL-~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivGAd 570 (630)
+||..|-++.+=.-| ..+.++...++|+++.-++.. +..|...++.+.. .| ..+..++..+|.||--|-
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-----~~~l~~~~~~~~~-~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK-----ASTLADQGVEVRH-GDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-----THHHHHTTCEEEE-CCTTCHHHHHHHTTTCSEEEECCC
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHH-----HhHHhhcCCeEEE-eccCCHHHHHHHHhcCCEEEEcCC
Confidence 478888887665444 444444113567766544422 1234455665432 33 456667778888876543
Q ss_pred eEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 571 aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.- -+.-+|-.||..+.-+|+..++.-+|.+.+
T Consensus 76 ~~--~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 76 PH--YDNTLLIVQHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp CC--SCHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CC--cCchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 21 111237789999999999999876665544
No 163
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=44.87 E-value=1.1e+02 Score=33.83 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHhhccCCCEEEeecChH------HHHHHHHHHHH---cC--CceEEEEc-CCCCC-----------------chHHH
Q 006803 485 RHAATKVRDGDVLLTYGSSC------VVEMILLYAHE---LG--KQFRVVVV-DSRPK-----------------HEGQA 535 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~------tV~~vL~~A~e---~g--k~f~ViV~-ESRP~-----------------~eG~~ 535 (630)
+.|+.+|+||++|...|+.+ ++..+.+.+.+ .| .+++++.. -..|. +.|..
T Consensus 9 eEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~~~ 88 (506)
T 2nvv_A 9 EEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKD 88 (506)
T ss_dssp HHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCHH
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEEeeeCCCHH
Confidence 34667899999999998753 44555555443 33 24555542 22222 22333
Q ss_pred HHHHHHhCC-CcEEEEcchhHHHHhc-----cccEEEEcceeEecCCceecc
Q 006803 536 LLRRLLAKG-LSCTYTHINAVSYIMH-----EVTRVFLGASSVLSNGTTYSR 581 (630)
Q Consensus 536 La~eL~~~G-I~vTlI~DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~NK 581 (630)
+ +++.+.| +.++-+..+.+..++. .+|..|+-|...-.+|.+.-.
T Consensus 89 ~-r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 139 (506)
T 2nvv_A 89 L-RNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPT 139 (506)
T ss_dssp H-HHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECC
T ss_pred H-HHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 2 3344444 4333333454554443 489999999999999987653
No 164
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=44.82 E-value=62 Score=30.96 Aligned_cols=37 Identities=19% Similarity=0.003 Sum_probs=30.3
Q ss_pred hHHHHHHHHHh--CCCcEEEEcchhHHHHhccccEEEEc
Q 006803 532 EGQALLRRLLA--KGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 532 eG~~La~eL~~--~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
+=..+++.+.+ .|+++..||++.-+.+-+.+|.+|.-
T Consensus 121 ~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 121 EIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 33455688888 99999999998888888889998874
No 165
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=44.75 E-value=1.6e+02 Score=30.15 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=52.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-H-HHHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-R-RLLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~-eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
+.|++-+.+..+..++....+.| -+|++. .|.+.+.... . .+...|+.+.++.. ..+-..+. ++.+|++
T Consensus 79 ~~i~~~~g~~ai~~~~~~l~~~g--d~Vl~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l- 153 (404)
T 1e5e_A 79 ACVATSSGMGAIAATVLTILKAG--DHLISD--ECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYF- 153 (404)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEE-
T ss_pred cEEEeCChHHHHHHHHHHHhCCC--CEEEEe--CCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEE-
Confidence 45555554444444443333333 456664 5666654332 2 46678999988863 33444444 3334443
Q ss_pred ceeEecCCceecccchHHHHHHHHh-CCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHA-FRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~-~~VPV~V 600 (630)
..---..|.+.. --.|+-+|+. |++.|+|
T Consensus 154 ~~p~NptG~v~~---l~~i~~la~~~~~~~li~ 183 (404)
T 1e5e_A 154 ETPANPTLKIID---MERVCKDAHSQEGVLVIA 183 (404)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHTSTTCEEEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHhhcCCEEEE
Confidence 222223344443 3567788999 9998876
No 166
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=44.52 E-value=33 Score=35.09 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=72.4
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhC-CCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAK-GLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
-|.++.+-....+..++.++.+.|.+.-|++.+.-+..+-.++...+.+. |+. +|-.|..+.+.+...+...-...+
T Consensus 72 vD~avI~vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~--liGPnc~Gii~p~~~~~~~~~~~~ 149 (305)
T 2fp4_A 72 ATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR--LIGPNCPGVINPGECKIGIMPGHI 149 (305)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE--EECSSSCEEEETTTEEEESSCGGG
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE--EEeCCCCeEecccccceeeccccC
Confidence 46777777888999999999998887667777777665555777777777 875 677777776665433322212223
Q ss_pred ecCC--ceecccchHHHHHH--HHhCCCcEEE
Q 006803 573 LSNG--TTYSRVGTACVAMV--AHAFRVPVLI 600 (630)
Q Consensus 573 ~aNG--~V~NKiGT~~lAla--Ak~~~VPV~V 600 (630)
..-| ++++..||+..+++ +...++.|--
T Consensus 150 ~~~G~va~vSqSG~l~~~~~~~~~~~g~G~S~ 181 (305)
T 2fp4_A 150 HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 181 (305)
T ss_dssp CCEEEEEEEESCSHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCEEEEecchHHHHHHHHHHHhcCCCeeE
Confidence 3334 57899999988876 5667787753
No 167
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=44.39 E-value=2.1e+02 Score=28.34 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=49.5
Q ss_pred CEEEeecChHHHHHHHHH--HHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc--
Q 006803 495 DVLLTYGSSCVVEMILLY--AHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH-- 560 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~--A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-- 560 (630)
.+++|.|.+..+..+++. ....| -+|++. .|.+.+.. ..+...|+.+..+.- ..+-..+.
T Consensus 97 ~i~~t~g~~~a~~~~~~~~~~~~~g--d~vl~~--~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 170 (397)
T 3fsl_A 97 ATIQTLGGSGALKVGADFLKRYFPE--SGVWVS--DPTWENHV--AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTT--CCEEEE--SSCCHHHH--HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCC--CeEEEe--CCCchhHH--HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence 567777766666555432 22233 245544 36665543 334456777776642 12333333
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.-.++++=..---..|.+++.----.++-+|+.|++.+++
T Consensus 171 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 211 (397)
T 3fsl_A 171 QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFL 211 (397)
T ss_dssp CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEE
Confidence 1223333222222233333333233677788888887776
No 168
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=44.36 E-value=1.2e+02 Score=29.09 Aligned_cols=37 Identities=8% Similarity=-0.151 Sum_probs=30.5
Q ss_pred chHHHHHHHHHhCCCcEEEEcchhHH-----------HHhccccEEEE
Q 006803 531 HEGQALLRRLLAKGLSCTYTHINAVS-----------YIMHEVTRVFL 567 (630)
Q Consensus 531 ~eG~~La~eL~~~GI~vTlI~DsAv~-----------~iM~~Vd~Viv 567 (630)
.+=.++++.+.+.|+++..||++.-+ .+.+.+|.+|.
T Consensus 122 ~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 122 TVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 34556678889999999999999877 77778999886
No 169
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=44.35 E-value=77 Score=31.87 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=53.3
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-------hhHHHHhc--ccc
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-------NAVSYIMH--EVT 563 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~--~Vd 563 (630)
...+++|.|.+..+..++..+.+.| -+|++. .|.+.|.... +...|+.+..+.. ..+-..+. ++.
T Consensus 91 ~~~v~~~~g~~~al~~~~~~~~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 164 (397)
T 2zyj_A 91 PEEVLITTGSQQALDLVGKVFLDEG--SPVLLE--APSYMGAIQA--FRLQGPRFLTVPAGEEGPDLDALEEVLKRERPR 164 (397)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHHH--HHTTCCEEEEEEEETTEECHHHHHHHHHHCCCS
T ss_pred hhhEEEeccHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHHH--HHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCe
Confidence 3467777776666665655543333 355553 3666665433 3456877766642 22333333 344
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|++=...-...|.++..-=--.|+-+|+.|++.+++
T Consensus 165 ~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 165 FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp CEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4433222212234443321122577788899998886
No 170
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=44.20 E-value=85 Score=25.76 Aligned_cols=81 Identities=9% Similarity=0.086 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHHH-h
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH-A 593 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk-~ 593 (630)
...+|.++|..+.. ...+...|.+.|..+....+..-+. .+. ..|.||+..+-- + .-|.-.+..+-+ .
T Consensus 6 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~--~-----~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 6 VGKQILIVEDEQVF-RSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP--R-----MNGLKLLEHIRNRG 77 (130)
T ss_dssp TTCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------------CHHHHHHHHHTT
T ss_pred CCCeEEEEeCCHHH-HHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC--C-----CCHHHHHHHHHhcC
Confidence 34578888876654 2334567778888877665533222 222 478888876432 2 223333333333 3
Q ss_pred CCCcEEEeccccc
Q 006803 594 FRVPVLICCEAYK 606 (630)
Q Consensus 594 ~~VPV~V~aet~K 606 (630)
.++|+++++....
T Consensus 78 ~~~~ii~~t~~~~ 90 (130)
T 3eod_A 78 DQTPVLVISATEN 90 (130)
T ss_dssp CCCCEEEEECCCC
T ss_pred CCCCEEEEEcCCC
Confidence 4799999876553
No 171
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=44.19 E-value=44 Score=30.06 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=59.7
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEcc
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivGA 569 (630)
.+||..|-++.+= .+++.+.++| .+|+++.-++... ..+...++.+. ..| ..+..++..+|.||.-|
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~~~~-----~~~~~~~~~~~-~~D~~~~~~~~~~~~~~d~vi~~a 75 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSRL-----PSEGPRPAHVV-VGDVLQAADVDKTVAGQDAVIVLL 75 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGGS-----CSSSCCCSEEE-ESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeChhhc-----ccccCCceEEE-EecCCCHHHHHHHHcCCCEEEECc
Confidence 5788888877654 4555555666 5777765443210 01112344322 233 35666777888887655
Q ss_pred eeEe-cCCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 570 SSVL-SNGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 570 daI~-aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
-... .+-.-+|-.|+..+.-+|+.+++.-+|...+.
T Consensus 76 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred cCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 3211 11123567889999888988888766655544
No 172
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=43.84 E-value=97 Score=26.02 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=45.2
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH--HHhc-cccEEEEcceeEecCCceecccchHHHHHHHH---
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS--YIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH--- 592 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk--- 592 (630)
..+|+|+|..+.. ...+...|...|+.|....+..-+ .+-. ..|.||+..+ +.+. -|.-.+..+-+
T Consensus 4 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~lr~~~~ 75 (136)
T 3t6k_A 4 PHTLLIVDDDDTV-AEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGI-----DGYTLCKRVRQHPL 75 (136)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCCC
Confidence 4577777776654 233456677788877766553322 2222 5788887543 3332 24444444433
Q ss_pred hCCCcEEEecccc
Q 006803 593 AFRVPVLICCEAY 605 (630)
Q Consensus 593 ~~~VPV~V~aet~ 605 (630)
..++|+++++...
T Consensus 76 ~~~~pii~~t~~~ 88 (136)
T 3t6k_A 76 TKTLPILMLTAQG 88 (136)
T ss_dssp GTTCCEEEEECTT
T ss_pred cCCccEEEEecCC
Confidence 2479999987654
No 173
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=43.68 E-value=82 Score=27.48 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH----hccccEEEEcc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI----MHEVTRVFLGA 569 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i----M~~Vd~VivGA 569 (630)
.+.|+..|+...-..+...+.+.| +.|+++|..| ..+..|.+.|+.+.+....-...+ +.++|.||+.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~-----~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~- 78 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSR-----TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILT- 78 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCH-----HHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC-
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCH-----HHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEE-
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
+-+..-+..+++.++..+--..+++
T Consensus 79 --------~~~~~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 79 --------IPNGYEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp --------CSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred --------CCChHHHHHHHHHHHHHCCCCeEEE
No 174
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=43.51 E-value=74 Score=31.21 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=59.3
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEcc
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivGA 569 (630)
.+||..|-++.+= .+++.+.++| .+|+++.-++... ..|...++.+. ..| ..+..++..+|.||--|
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~-----~~l~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vih~a 85 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG--HDLVLIHRPSSQI-----QRLAYLEPECR-VAEMLDHAGLERALRGLDGVIFSA 85 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECTTSCG-----GGGGGGCCEEE-ECCTTCHHHHHHHTTTCSEEEEC-
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CEEEEEecChHhh-----hhhccCCeEEE-EecCCCHHHHHHHHcCCCEEEECC
Confidence 4789999888664 4444555555 5777776544321 12333355443 233 45667778888888765
Q ss_pred eeEecC-Cc-----eecccchHHHHHHHHhCCCcEEEecccc
Q 006803 570 SSVLSN-GT-----TYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 570 daI~aN-G~-----V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
-..-.. .+ -+|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~ 127 (342)
T 2x4g_A 86 GYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSA 127 (342)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCG
T ss_pred ccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCH
Confidence 422110 11 1467899999999998887655554443
No 175
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=43.50 E-value=82 Score=32.39 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=56.3
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-------hHHHHhc----
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-------AVSYIMH---- 560 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~---- 560 (630)
...++++|.|.+..+..++..+.+.| -+|++. .|.+.+... .+...|+.+..+... -+..+..
T Consensus 117 ~~~~v~~t~g~t~al~~~~~~l~~~g--d~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 190 (427)
T 3dyd_A 117 EAKDVILTSGCSQAIDLCLAVLANPG--QNILVP--RPGFSLYKT--LAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE 190 (427)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCTHHHH--HHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT
T ss_pred ChHHEEEecCcHHHHHHHHHHhcCCC--CEEEEc--CCCchhHHH--HHHHcCCEEEEEecccccCCCCCHHHHHHHhcc
Confidence 34577888887777766666654333 356655 366666543 344578877665421 1222222
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+...|++ .+.--..|.++.+----.|+-+|+.|++.+++=
T Consensus 191 ~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~D 230 (427)
T 3dyd_A 191 KTACLIV-NNPSNPCGSVFSKRHLQKILAVAARQCVPILAD 230 (427)
T ss_dssp TEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEE-ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 2223332 111122344443333456788899999988873
No 176
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=43.35 E-value=1.4e+02 Score=32.86 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=54.5
Q ss_pred HHHHhhccCCCEEEeecChH------HHHHHHHHHHHcCCceEEEEc-CCCCCch-----------------HHHHHHHH
Q 006803 485 RHAATKVRDGDVLLTYGSSC------VVEMILLYAHELGKQFRVVVV-DSRPKHE-----------------GQALLRRL 540 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~------tV~~vL~~A~e~gk~f~ViV~-ESRP~~e-----------------G~~La~eL 540 (630)
+.|+.+|+||++|...|+.+ ++..+.+.+.+.+.+++++.. ...|..+ |.. .+++
T Consensus 19 eEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~~-~r~~ 97 (497)
T 2g39_A 19 AEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDST-LRKA 97 (497)
T ss_dssp HHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCHH-HHHH
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCceEEEEecccccccchHHHhcCCceEEEEeeCCCHH-HHHH
Confidence 34567899999999998752 344444443322223555542 3333322 222 2344
Q ss_pred HhCCCcEEEEc--chhHHHHhc-----cccEEEEcceeEecCCceecc
Q 006803 541 LAKGLSCTYTH--INAVSYIMH-----EVTRVFLGASSVLSNGTTYSR 581 (630)
Q Consensus 541 ~~~GI~vTlI~--DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~NK 581 (630)
.+.|- ++|++ .+.+..++. .+|..|+-|...-.+|.+.-.
T Consensus 98 i~~G~-v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 144 (497)
T 2g39_A 98 INAGE-VMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPT 144 (497)
T ss_dssp HHTTS-SEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECC
T ss_pred HHcCC-CeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 44453 34433 233433332 489999999999999987653
No 177
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=43.20 E-value=87 Score=25.10 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=44.3
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH--Hhc-cccEEEEcceeEecCCceecccchHHHHHHHHhCCC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY--IMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRV 596 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~--iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~V 596 (630)
++|+|+|..+.. ...+...|...|+.+....+..-+. +.. ..|.||+..+ +.+. -|.-.+..+.+...+
T Consensus 2 ~~ilivdd~~~~-~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 73 (121)
T 1zh2_A 2 TNVLIVEDEQAI-RRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDG-----DGIEFIRDLRQWSAV 73 (121)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTE-----EHHHHHHHHHTTCCC
T ss_pred cEEEEEeCCHHH-HHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----cHHHHHHHHHhCCCC
Confidence 467777776643 2334466777788777655533222 222 5788888543 3321 243334444445679
Q ss_pred cEEEecccc
Q 006803 597 PVLICCEAY 605 (630)
Q Consensus 597 PV~V~aet~ 605 (630)
|+++++...
T Consensus 74 ~ii~~s~~~ 82 (121)
T 1zh2_A 74 PVIVLSARS 82 (121)
T ss_dssp CEEEEESCC
T ss_pred cEEEEECCC
Confidence 999987654
No 178
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=43.16 E-value=1e+02 Score=30.07 Aligned_cols=100 Identities=7% Similarity=0.032 Sum_probs=57.4
Q ss_pred CEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc--chhHHHHhccccEEEEccee
Q 006803 495 DVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH--INAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 495 dvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--DsAv~~iM~~Vd~VivGAda 571 (630)
.+||..|-++.+=. ++..+.++| .+|+++.-++...- |. ++.+.... ...+..++..+|.||--|-.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~------~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDG--NTPIILTRSIGNKA------IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCC-------------CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC--CEEEEEeCCCCccc------CC--ceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 47888898886643 444444555 46777665433211 21 55432222 23455566677877765533
Q ss_pred EecC----CceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 572 VLSN----GTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 572 I~aN----G~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
...+ -.-.|-.||..+.-+|+..+++-+|.+.+
T Consensus 73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS 109 (311)
T 3m2p_A 73 RGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST 109 (311)
T ss_dssp CCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2211 11257789999999999999995554443
No 179
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=42.92 E-value=76 Score=32.45 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=59.4
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEcchhHHHHhccccEEEEcce-
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTHINAVSYIMHEVTRVFLGAS- 570 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~~Vd~VivGAd- 570 (630)
+..+|+.+|........+....+.....+|+|.+-. .-..|+.+|.+ .|++++.. .+...+.++|.|+...-
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---~a~~la~~l~~~~g~~~~~~---~~~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---ASPEILERIGRRCGVPARMA---APADIAAQADIVVTATRS 193 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---CCHHHHHHHHHHHTSCEEEC---CHHHHHHHCSEEEECCCC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---HHHHHHHHHHHhcCCeEEEe---CHHHHHhhCCEEEEccCC
Confidence 567899999888776666655443334467777655 45567776664 48887665 34556788999987431
Q ss_pred -------eEecCCceecccchHH
Q 006803 571 -------SVLSNGTTYSRVGTAC 586 (630)
Q Consensus 571 -------aI~aNG~V~NKiGT~~ 586 (630)
..+..|.+++-+|++.
T Consensus 194 ~~pvl~~~~l~~G~~V~~vGs~~ 216 (313)
T 3hdj_A 194 TTPLFAGQALRAGAFVGAIGSSL 216 (313)
T ss_dssp SSCSSCGGGCCTTCEEEECCCSS
T ss_pred CCcccCHHHcCCCcEEEECCCCC
Confidence 2356788888888863
No 180
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=42.74 E-value=73 Score=31.28 Aligned_cols=98 Identities=15% Similarity=0.257 Sum_probs=51.3
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhccccE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMHEVTR 564 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~Vd~ 564 (630)
...+++|-|.+..+..++..+ -+|++.+ |.+.+... .+...|+.+..+.. ..+-..+.....
T Consensus 78 ~~~i~~~~g~t~al~~~~~~~------d~vi~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 147 (361)
T 3ftb_A 78 DIGIVLGNGASEIIELSISLF------EKILIIV--PSYAEYEI--NAKKHGVSVVFSYLDENMCIDYEDIISKIDDVDS 147 (361)
T ss_dssp SCEEEEESSHHHHHHHHHTTC------SEEEEEE--SCCTHHHH--HHHHTTCEEEEEECCTTSCCCHHHHHHHTTTCSE
T ss_pred cceEEEcCCHHHHHHHHHHHc------CcEEEec--CChHHHHH--HHHHcCCeEEEeecCcccCCCHHHHHHhccCCCE
Confidence 345666666555555544433 3555543 56666443 34456888887752 234444444333
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
|++ ..---..|.++..---..++-+|+.||+.+++=
T Consensus 148 v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 183 (361)
T 3ftb_A 148 VII-GNPNNPNGGLINKEKFIHVLKLAEEKKKTIIID 183 (361)
T ss_dssp EEE-ETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEE
Confidence 332 111122333333323345777788999988873
No 181
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=42.66 E-value=1.2e+02 Score=30.31 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=53.6
Q ss_pred cCCC-EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----------hHHHHhc
Q 006803 492 RDGD-VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----------AVSYIMH 560 (630)
Q Consensus 492 ~dgd-vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 560 (630)
.... +++|.|-+..+..++..+...| -+|++.+ |.+.|...+ +...|+.+..+... .+-..+.
T Consensus 85 ~~~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 158 (389)
T 1gd9_A 85 DPKTEIMVLLGANQAFLMGLSAFLKDG--EEVLIPT--PAFVSYAPA--VILAGGKPVEVPTYEEDEFRLNVDELKKYVT 158 (389)
T ss_dssp CTTTSEEEESSTTHHHHHHHTTTCCTT--CEEEEEE--SCCTTHHHH--HHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred CCCCeEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHHH--HHHCCCEEEEeccCCccCCCCCHHHHHHhcC
Confidence 3446 8888888887776666553333 3566554 445554332 33457777776521 1222222
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++ ...--..|.++..-=--.|+-+|+.||+.+++
T Consensus 159 ~~~~~v~~-~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 159 DKTRALII-NSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCceEEEE-ECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3334443 22111234333322233567788899998876
No 182
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=42.66 E-value=2.2e+02 Score=28.69 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=52.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-H-HHHhCCCcEEEEcchh---HHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-R-RLLAKGLSCTYTHINA---VSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~-eL~~~GI~vTlI~DsA---v~~iM~-~Vd~VivG 568 (630)
+.|++-+-+..+..+|..+.+.| -+|++. .|.+.+.... . .+...|+.+.++...- +-..+. ++..|++
T Consensus 81 ~~i~~~sG~~a~~~~l~~~~~~g--d~vi~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 155 (398)
T 2rfv_A 81 AGLATASGISAITTTLLTLCQQG--DHIVSA--SAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYI- 155 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 55665554434444444443333 456665 4566665433 2 2367899988886432 223333 3434443
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
...--..|.+.. -..|+-+|+.|++.+++
T Consensus 156 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 184 (398)
T 2rfv_A 156 ETPANPTLSLVD---IETVAGIAHQQGALLVV 184 (398)
T ss_dssp ESSBTTTTBCCC---HHHHHHHHHHTTCEEEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 222222344443 45678889999998876
No 183
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=42.33 E-value=89 Score=25.24 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=44.2
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRV 596 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~V 596 (630)
.+|+|+|..+.. ...+...|...|+.+....+..-+. ++. ..|.||+..+ +.+. -|.-.+..+-+...+
T Consensus 3 ~~ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~~ 74 (122)
T 1zgz_A 3 HHIVIVEDEPVT-QARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDE-----NGLMLTRALRERSTV 74 (122)
T ss_dssp CEEEEECSSHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHTTCCC
T ss_pred cEEEEEECCHHH-HHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCC-----ChHHHHHHHHhcCCC
Confidence 367777776543 2334466777788776655432221 222 4788887543 3322 243344444445679
Q ss_pred cEEEeccccc
Q 006803 597 PVLICCEAYK 606 (630)
Q Consensus 597 PV~V~aet~K 606 (630)
|+++++....
T Consensus 75 ~ii~~s~~~~ 84 (122)
T 1zgz_A 75 GIILVTGRSD 84 (122)
T ss_dssp EEEEEESSCC
T ss_pred CEEEEECCCC
Confidence 9998876543
No 184
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=42.24 E-value=2.6e+02 Score=27.97 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=50.2
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCC--cEEEEc-----------------chhHH
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGL--SCTYTH-----------------INAVS 556 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI~-----------------DsAv~ 556 (630)
+++|-|-+..++.++ .+... .-+|++.+ +.+-|..+...+...|+ .+.++. ...+-
T Consensus 54 v~~~~sgt~a~~~~~-~~~~~--gd~vi~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~ 128 (379)
T 3ke3_A 54 VIIPGSGTYGMEAVA-RQLTI--DEDCLIIR--NGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAV 128 (379)
T ss_dssp EEEESCHHHHHHHHH-HHHCT--TCEEEEEE--CSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHH
T ss_pred EEEcCChhHHHHHHH-HhCCC--CCeEEEEe--CCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHH
Confidence 344444444445544 33333 34677776 45556655555555565 444442 12344
Q ss_pred HHhc--cccEEEEcceeEecCCceecccc-hHHHHHHHHhCCCcEEEe
Q 006803 557 YIMH--EVTRVFLGASSVLSNGTTYSRVG-TACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 557 ~iM~--~Vd~VivGAdaI~aNG~V~NKiG-T~~lAlaAk~~~VPV~V~ 601 (630)
..+. +...|++- +.=...| ++...+ --.|+-+|+.|++.++|=
T Consensus 129 ~~i~~~~~~~v~~~-~~~~~~G-~~~~~~~l~~i~~~~~~~~~~li~D 174 (379)
T 3ke3_A 129 AKIKEDKSAIVYAP-HVETSSG-IILSEEYIKALSEAVHSVGGLLVID 174 (379)
T ss_dssp HHHHHHTCSEEEEE-SEETTTT-EECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhcCCcEEEEE-eecCCCc-eeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4442 45555441 1111234 444422 335777889999988873
No 185
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=42.19 E-value=90 Score=30.68 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=53.2
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhcc--ccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMHE--VTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~--Vd~ 564 (630)
.+++|.|-+..+. +|..+... .-+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+.+ +..
T Consensus 56 ~v~~~~g~t~al~-~~~~~~~~--gd~vi~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 130 (384)
T 3zrp_A 56 PLIIPGGGTSAME-SVTSLLKP--NDKILVVS--NGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL 130 (384)
T ss_dssp EEEEESCHHHHHH-HGGGGCCT--TCEEEEEC--SSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEE
T ss_pred EEEEcCCcHHHHH-HHHhhcCC--CCEEEEec--CCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcE
Confidence 3666766666666 66554333 33566654 344444444445667988888753 223333333 333
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++ ...=...|.+.. --.|+-+|+.||+.+++
T Consensus 131 v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 162 (384)
T 3zrp_A 131 VAL-THVETSTGVREP---VKDVINKIRKYVELIVV 162 (384)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHGGGEEEEEE
T ss_pred EEE-eCCCCCCceECc---HHHHHHHHHhcCCEEEE
Confidence 333 332233454443 34577889999987776
No 186
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=41.74 E-value=1.9e+02 Score=30.50 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=53.9
Q ss_pred CCCEEEeecChHHHHHHHHHHHH--------cC----CceEEEEcCCCCCchHHHHHHHHHhCCC-cEEEEcch------
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHE--------LG----KQFRVVVVDSRPKHEGQALLRRLLAKGL-SCTYTHIN------ 553 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e--------~g----k~f~ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~Ds------ 553 (630)
.+..++|-|-|..++..|..+.. .| .+..|++.+ +.+-...-+..+...|. .+..|.-.
T Consensus 151 ~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~--~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d 228 (504)
T 2okj_A 151 DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSE--QSHYSIKKAGAALGFGTDNVILIKCNERGKII 228 (504)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET--TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBC
T ss_pred CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC--cchHHHHHHHHHcCCCcccEEEEecCCCCCCC
Confidence 45678887777766666666542 35 245677754 23323333333333344 77777532
Q ss_pred --hHHHHhcc------ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 554 --AVSYIMHE------VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 554 --Av~~iM~~------Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++-..+.+ ..++|+....-...|.+. . --.|+-+|+.||+.|+|
T Consensus 229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~-~--l~~I~~la~~~g~~lhv 280 (504)
T 2okj_A 229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-P--IQEIADICEKYNLWLHV 280 (504)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC-C--HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC-C--HHHHHHHHHHcCCEEEE
Confidence 23333332 234444332222224332 2 24678889999999887
No 187
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=41.73 E-value=7 Score=40.49 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=46.6
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc----chhHHHHhccccEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH----INAVSYIMHEVTRV 565 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----DsAv~~iM~~Vd~V 565 (630)
.+..|.+|+..|.......+++.|++.| ++|++++..|...+..++ +..++. ..++-.+..++|.|
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G--~~vi~~d~~~~~~~~~~a--------d~~~~~~~~d~~~l~~~~~~~dvI 79 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMG--YKIAVLDPTKNSPCAQVA--------DIEIVASYDDLKAIQHLAEISDVV 79 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSTTCTTTTTC--------SEEEECCTTCHHHHHHHHHTCSEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCCCchHHhC--------CceEecCcCCHHHHHHHHHhCCEe
Confidence 4557889999999988888888888766 678888876654433321 112222 12455556677877
Q ss_pred EEccee
Q 006803 566 FLGASS 571 (630)
Q Consensus 566 ivGAda 571 (630)
..+-+.
T Consensus 80 ~~~~e~ 85 (389)
T 3q2o_A 80 TYEFEN 85 (389)
T ss_dssp EESCCC
T ss_pred eecccc
Confidence 766443
No 188
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=41.72 E-value=53 Score=33.24 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCcEEEeccccc
Q 006803 586 CVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 586 ~lAlaAk~~~VPV~V~aet~K 606 (630)
...++|+..+||++.+...+-
T Consensus 131 ~~~~aA~~~giP~v~~~~~~~ 151 (415)
T 3rsc_A 131 AGQLLAARWRRPAVRLSAAFA 151 (415)
T ss_dssp HHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHHHhCCCEEEEEeccc
Confidence 346778999999998875554
No 189
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=41.69 E-value=69 Score=27.43 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=47.3
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHHHh-
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA- 593 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~- 593 (630)
...+|+|+|..+.. ...|...|...|+.|....+..-+. .+. ..|.||+..+- .+ .-|.-.+..+-+.
T Consensus 2 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l--~~-----~~g~~~~~~l~~~~ 73 (155)
T 1qkk_A 2 AAPSVFLIDDDRDL-RKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRM--PG-----MDGLALFRKILALD 73 (155)
T ss_dssp --CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCC--SS-----SCHHHHHHHHHHHC
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CC-----CCHHHHHHHHHhhC
Confidence 34678888877644 3345577788899887665533222 222 47888887542 21 2243334444443
Q ss_pred CCCcEEEeccccc
Q 006803 594 FRVPVLICCEAYK 606 (630)
Q Consensus 594 ~~VPV~V~aet~K 606 (630)
.++|+++++....
T Consensus 74 ~~~pii~ls~~~~ 86 (155)
T 1qkk_A 74 PDLPMILVTGHGD 86 (155)
T ss_dssp TTSCEEEEECGGG
T ss_pred CCCCEEEEECCCC
Confidence 4899999976544
No 190
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=41.64 E-value=87 Score=30.52 Aligned_cols=110 Identities=18% Similarity=0.090 Sum_probs=60.6
Q ss_pred cCCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEE--cc----hhHHHHhcccc
Q 006803 492 RDGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYT--HI----NAVSYIMHEVT 563 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI--~D----sAv~~iM~~Vd 563 (630)
..|.+||..|-++.+= .++..+.++| .+|+++.-.+. ....+...+.. .+-.++++ .| ..+..++..+|
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d 85 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHG--YKVRGTARSAS-KLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAA 85 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHH-HHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCcc-cHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCC
Confidence 4577899999888664 4444455555 56776654322 22233333322 23345554 34 33444555677
Q ss_pred EEEEcceeEecCCc-----eecccchHHHHHHHH-hCCCcEEEeccc
Q 006803 564 RVFLGASSVLSNGT-----TYSRVGTACVAMVAH-AFRVPVLICCEA 604 (630)
Q Consensus 564 ~VivGAdaI~aNG~-----V~NKiGT~~lAlaAk-~~~VPV~V~aet 604 (630)
.||--|-....+.+ -.|-.||..+.-+|+ ..++.-+|.+.+
T Consensus 86 ~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS 132 (342)
T 1y1p_A 86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 77765532211111 136789999998887 467765655444
No 191
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=41.53 E-value=46 Score=30.57 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=58.2
Q ss_pred EEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE--cchhHHHHhccccEEEEcceeE
Q 006803 496 VLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT--HINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 496 vILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.||..|-++-+= .+++.+.++| .+|+++.-++. . ...|...++.+... +|... ..+..+|.||--|-..
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~----~-~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~ 73 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRG--HEVLAVVRDPQ----K-AADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVP 73 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHH----H-HHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEeccc----c-cccccCCCceEEecccccccH-hhcccCCEEEECCccC
Confidence 578888877654 4444555555 56776644321 1 23444456544322 22222 5667788877655332
Q ss_pred -ecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 573 -LSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 573 -~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
...-.-.|-.||..+.-+|+..+..|+++.
T Consensus 74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~S 104 (224)
T 3h2s_A 74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFIL 104 (224)
T ss_dssp TTSSCTHHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 111233488899999999999996666664
No 192
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=41.28 E-value=41 Score=38.29 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=44.6
Q ss_pred CEEEeecChH--HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh---CCCcEEEEcchhHHHHhc-cccEEE
Q 006803 495 DVLLTYGSSC--VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA---KGLSCTYTHINAVSYIMH-EVTRVF 566 (630)
Q Consensus 495 dvILT~g~S~--tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~---~GI~vTlI~DsAv~~iM~-~Vd~Vi 566 (630)
.+||..|..+ .+...|+.+.+.+++++||.+|-.|.- ..+.++.+ .+=.+|+|.-.+=-.-++ +||.+|
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A---~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV 433 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA---VVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV 433 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH---HHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH---HHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence 4788887665 566778877778899999999998753 34433332 344577776443333333 566665
No 193
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=41.14 E-value=52 Score=32.84 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCcEEEecccccc
Q 006803 586 CVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 586 ~lAlaAk~~~VPV~V~aet~Kf 607 (630)
...++|+..+||++.++..+-+
T Consensus 115 ~~~~aA~~~giP~v~~~~~~~~ 136 (402)
T 3ia7_A 115 AGRLLAARWDRPAVRLTGGFAA 136 (402)
T ss_dssp HHHHHHHHHTCCEEEEESSCCC
T ss_pred HHHHHHHhhCCCEEEEeccccc
Confidence 3567789999999988755543
No 194
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=40.96 E-value=72 Score=30.97 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=13.6
Q ss_pred cccchHHHHHHHHhCCCc
Q 006803 580 SRVGTACVAMVAHAFRVP 597 (630)
Q Consensus 580 NKiGT~~lAlaAk~~~VP 597 (630)
|-.||..|.-+++..+++
T Consensus 82 ~v~~t~~l~~~~~~~~~~ 99 (298)
T 4b4o_A 82 RLETTQLLAKAITKAPQP 99 (298)
T ss_dssp HHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 556888888888877655
No 195
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=40.61 E-value=52 Score=32.06 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=48.6
Q ss_pred CCEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhcc--ccEEEEcce
Q 006803 494 GDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHE--VTRVFLGAS 570 (630)
Q Consensus 494 gdvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~--Vd~VivGAd 570 (630)
+.+||..|-++.+=. ++..+.++| .+|+++.-++...+ -+.+-+.....+..++.. +|.||--|-
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~----------~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN--WHAVGCGFRRARPK----------FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC--CeEEEEccCCCCCC----------eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 457888888886644 444444445 67777763222111 111222222334445553 788876553
Q ss_pred eEecC--------CceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 571 SVLSN--------GTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 571 aI~aN--------G~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
....+ -.-+|-.||..+.-+|+.+++.|+.+....
T Consensus 70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~ 112 (315)
T 2ydy_A 70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDY 112 (315)
T ss_dssp ------------------CHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHH
Confidence 32111 112478899999999998888766654443
No 196
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=40.52 E-value=55 Score=31.94 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=45.4
Q ss_pred EEEeecChHHHHHHHHHHHHcCC-ceEEEEc-CCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc--c
Q 006803 496 VLLTYGSSCVVEMILLYAHELGK-QFRVVVV-DSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH--E 561 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk-~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~ 561 (630)
.||.-|+.+....+|... +.|. .++|..+ -.+|...|...| .++|||+.++.. ..+...+. +
T Consensus 11 ~vl~SG~gsnl~all~~~-~~~~l~~~I~~Visn~~~a~~l~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 86 (209)
T 4ds3_A 11 VIFISGGGSNMEALIRAA-QAPGFPAEIVAVFSDKAEAGGLAKA---EAAGIATQVFKRKDFASKEAHEDAILAALDVLK 86 (209)
T ss_dssp EEEESSCCHHHHHHHHHH-TSTTCSEEEEEEEESCTTCTHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCcHHHHHHHHHH-HcCCCCcEEEEEEECCcccHHHHHH---HHcCCCEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 467667766666666554 4443 4554433 347887775444 457999998752 34445555 6
Q ss_pred ccEEEEcc-eeEe
Q 006803 562 VTRVFLGA-SSVL 573 (630)
Q Consensus 562 Vd~VivGA-daI~ 573 (630)
+|++++-+ -.|+
T Consensus 87 ~Dliv~agy~~il 99 (209)
T 4ds3_A 87 PDIICLAGYMRLL 99 (209)
T ss_dssp CSEEEESSCCSCC
T ss_pred CCEEEEeccccCc
Confidence 89998855 3444
No 197
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=40.45 E-value=61 Score=32.61 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=15.0
Q ss_pred EEEeecChHHHHH-HHHHHHHcCCceEEEEcCC
Q 006803 496 VLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDS 527 (630)
Q Consensus 496 vILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ES 527 (630)
+||..|-++.+=. ++..+.++|. ++|++++-
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~-~~v~~~d~ 33 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTD-HHIFEVHR 33 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCC-CEEEECCT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-CEEEEECC
Confidence 4666676665433 2333333332 35555543
No 198
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=40.39 E-value=71 Score=32.91 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=47.8
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRV 565 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~V 565 (630)
.+..+.+||..|....-..+++.|++.| ++|++++..|...+..++ +-.++.| .++-.+..++|.|
T Consensus 8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG--~~viv~d~~~~~p~~~~a--------d~~~~~~~~d~~~l~~~~~~~dvi 77 (377)
T 3orq_A 8 KLKFGATIGIIGGGQLGKMMAQSAQKMG--YKVVVLDPSEDCPCRYVA--------HEFIQAKYDDEKALNQLGQKCDVI 77 (377)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTTCTTGGGS--------SEEEECCTTCHHHHHHHHHHCSEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCChhhhhC--------CEEEECCCCCHHHHHHHHHhCCcc
Confidence 3556889999999999899999998876 578888877765443332 1122222 3455556678887
Q ss_pred EEccee
Q 006803 566 FLGASS 571 (630)
Q Consensus 566 ivGAda 571 (630)
+.+-+.
T Consensus 78 ~~~~E~ 83 (377)
T 3orq_A 78 TYEFEN 83 (377)
T ss_dssp EESSTT
T ss_pred eecccc
Confidence 776543
No 199
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=40.21 E-value=93 Score=30.48 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=50.7
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhc---c
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMH---E 561 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~---~ 561 (630)
...+++|.|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+.+..+... .+-..+. +
T Consensus 68 ~~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 141 (354)
T 3ly1_A 68 APSILLTAGSSEGIRAAIEAYASLE--AQLVIPE--LTYGDGE--HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSG 141 (354)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEES--SSCTHHH--HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSS
T ss_pred hHHEEEeCChHHHHHHHHHHHhCCC--CeEEECC--CCchHHH--HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCC
Confidence 3467777666666655555443333 3566554 5665543 3344578888877532 3434443 5
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHh--CCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHA--FRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~--~~VPV~V 600 (630)
+..|++ ...-...|.++..- .+.-+++. |++.+++
T Consensus 142 ~~~v~l-~~p~nptG~~~~~~---~l~~l~~~~~~~~~li~ 178 (354)
T 3ly1_A 142 PSIVYL-VNPNNPTGTITPAD---VIEPWIASKPANTMFIV 178 (354)
T ss_dssp CEEEEE-ESSCTTTCCCCCHH---HHHHHHHTCCTTEEEEE
T ss_pred CCEEEE-eCCCCCcCCCcCHH---HHHHHHHhCCCCeEEEE
Confidence 556655 22222234333322 24444444 7776665
No 200
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=40.12 E-value=2.2e+02 Score=30.19 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=48.0
Q ss_pred HHHHHHhCCCcEEEE--cc---hhHHHHhc---cccEEEEcceeEecCCceecccchHHHHHHHHhC-CCcEEEeccccc
Q 006803 536 LLRRLLAKGLSCTYT--HI---NAVSYIMH---EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF-RVPVLICCEAYK 606 (630)
Q Consensus 536 La~eL~~~GI~vTlI--~D---sAv~~iM~---~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~-~VPV~V~aet~K 606 (630)
++..|.+.|+++.++ .| ..++.++. +++.+++|+-++ ||++.-.+-.+..-+.+..+ |.++.+. .+|-
T Consensus 286 ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~--~~~~~p~~~~~l~~l~~~~~~~K~~~~F-GSyG 362 (410)
T 4dik_A 286 AIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY--EAEIHPLMRFTLLEIIDKANYEKPVLVF-GVHG 362 (410)
T ss_dssp HHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCT--TSSSCHHHHHHHHHHHHHCCCCCEEEEE-EECC
T ss_pred HHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCc--CCcCCHHHHHHHHHHHhcccCCCEEEEE-ECCC
Confidence 346788899998754 33 23566665 789999999886 67788887777666666654 6766654 4553
No 201
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=40.09 E-value=89 Score=32.64 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=51.6
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-H-HHHHhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-L-RRLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
++|+|-+-+..+..+|..+.+.| -+|++. .|.+.|... . ..+...|+.++++... ++-..+. ++.+|++
T Consensus 98 ~~~~~~sG~~Ai~~al~~l~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~l- 172 (414)
T 3ndn_A 98 AAFATASGMAAVFTSLGALLGAG--DRLVAA--RSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFF- 172 (414)
T ss_dssp EEEEESSHHHHHHHHHHTTCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 34444333333333444332333 355554 355655433 2 3356689999998642 3333343 4556655
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..---..|.+.. --.|+-+|+.||++++|
T Consensus 173 e~p~NptG~~~~---l~~i~~la~~~g~~liv 201 (414)
T 3ndn_A 173 ETPSNPMQSLVD---IAAVTELAHAAGAKVVL 201 (414)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred ECCCCCCCcccc---HHHHHHHHHHcCCEEEE
Confidence 211122233322 34678889999998887
No 202
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=39.89 E-value=19 Score=35.69 Aligned_cols=107 Identities=12% Similarity=0.124 Sum_probs=59.6
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEcc
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivGA 569 (630)
.+||..|-++.+= .++..+.++|...+|++++-.+.......+..|...++.+. ..| .++..++..+|.||--|
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vih~A 83 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELV-VGDIADAELVDKLAAKADAIVHYA 83 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEE-ECCTTCHHHHHHHHTTCSEEEECC
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEE-ECCCCCHHHHHHHhhcCCEEEECC
Confidence 4688888877664 44445555544567887765432111111122222233322 233 45666777888887765
Q ss_pred eeEec-----CC---ceecccchHHHHHHHHhCCCcEEEec
Q 006803 570 SSVLS-----NG---TTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 570 daI~a-----NG---~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
-.... +- --+|-.||..+.-+|+.+++.|+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~S 124 (348)
T 1oc2_A 84 AESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 124 (348)
T ss_dssp SCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEE
T ss_pred cccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 32210 00 12467899999999998888555544
No 203
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=39.87 E-value=33 Score=32.48 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=37.2
Q ss_pred EEeecChH-HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc
Q 006803 497 LLTYGSSC-VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI 552 (630)
Q Consensus 497 ILT~g~S~-tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D 552 (630)
|.+|..+. .+...|..|+++|..++|++....-...+ .....|.+.||++.+...
T Consensus 64 i~~y~~~~~~i~~aL~~aa~rGV~Vrii~D~~~~~~~~-~~~~~l~~~gi~v~~~~~ 119 (196)
T 4ggj_A 64 LCLFAFSSPQLGRAVQLLHQRGVRVRVITDCDYMALNG-SQIGLLRKAGIQVRHDQD 119 (196)
T ss_dssp EEESCBCCHHHHHHHHHHHHTTCEEEEEESSCCC---C-CHHHHHHHTTCEEEECCS
T ss_pred EEEEEeCCHHHHHHHHHHHHcCCcEEEEEecccccccH-HHHHHHHhcCCCcccccc
Confidence 55665443 56778888999999999998654333222 234778999999876544
No 204
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=39.80 E-value=2.2e+02 Score=27.66 Aligned_cols=62 Identities=10% Similarity=0.001 Sum_probs=36.8
Q ss_pred HHHHhCCCc---EEEEcchhHHHHhc-----cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEecc
Q 006803 538 RRLLAKGLS---CTYTHINAVSYIMH-----EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 538 ~eL~~~GI~---vTlI~DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ae 603 (630)
..+.+.|++ +.+...+..-.++. ++|++++|+.. .|.+-. -.|+..-. +.++-.+||+|+=+
T Consensus 235 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g---~~~~~~~~~Gsv~~~-vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 235 ELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILG---RTGLSAAFLGNTAEQ-LIDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCS---CCSTHHHHHHHHHHH-HHTTCCSEEEEECC
T ss_pred HHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccC---ccCCccccccHHHHH-HHhhCCCCEEEECC
Confidence 445667874 45555544444444 68999999874 222322 24544333 34667899999844
No 205
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=39.73 E-value=1.1e+02 Score=29.74 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=50.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhcc---cc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMHE---VT 563 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~---Vd 563 (630)
.+++|.|-+..+..++..+...|. +|++.+ .|++ |..+...+...|+.+..+.. ..+-..+.+ +.
T Consensus 58 ~v~~~~g~t~a~~~~~~~~~~~gd--~vi~~~-~~~~-~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 133 (366)
T 1m32_A 58 SVLLQGSGSYAVEAVLGSALGPQD--KVLIVS-NGAY-GARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTIS 133 (366)
T ss_dssp EEEEESCHHHHHHHHHHHSCCTTC--CEEEEE-SSHH-HHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCC
T ss_pred EEEEecChHHHHHHHHHHhcCCCC--eEEEEe-CCCc-cHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeE
Confidence 366676666666555555433332 455543 3333 22233344556888777642 223333332 33
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|++ ...-...|.+.. --.|+-+|+.||+.+++
T Consensus 134 ~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 166 (366)
T 1m32_A 134 HIAM-VHSETTTGMLNP---IDEVGALAHRYGKTYIV 166 (366)
T ss_dssp EEEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEE
T ss_pred EEEE-ecccCCcceecC---HHHHHHHHHHcCCEEEE
Confidence 4432 221122376665 34677788999997776
No 206
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=39.69 E-value=1.2e+02 Score=30.90 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=54.6
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHH-hCCCcEEEEcch----------hHHHHh
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLL-AKGLSCTYTHIN----------AVSYIM 559 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI~Ds----------Av~~iM 559 (630)
+....+++|-|.+..+..++..+.+.| -+|++. +|.+.|... .+. ..|+.+..+... .+-..+
T Consensus 106 ~~~~~i~~~~G~~~ai~~~~~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 179 (428)
T 1iay_A 106 FDPERVVMAGGATGANETIIFCLADPG--DAFLVP--SPYYPAFNR--DLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179 (428)
T ss_dssp CCTTSCEEEEHHHHHHHHHHHHHCCTT--CEEEEE--SSCCTTHHH--HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHH
T ss_pred CChhhEEEccChHHHHHHHHHHhCCCC--CeEEEc--cCCCcchHH--HHHHhcCCEEEEeecCCccCCcCCHHHHHHHH
Confidence 334567888777776666665543333 356655 455655432 122 468877776421 122223
Q ss_pred c-------cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 560 H-------EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 560 ~-------~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
. ++..|++ +.---..|.++.+-=--.++-+|+.|++.++|
T Consensus 180 ~~~~~~~~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (428)
T 1iay_A 180 ENAQKSNIKVKGLIL-TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVC 226 (428)
T ss_dssp HHHHHTTCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHhcCCceEEEEE-cCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEE
Confidence 2 2444544 22212235544432234566778899998776
No 207
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=39.47 E-value=41 Score=31.92 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=54.4
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh----HHHH-hccccEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA----VSYI-MHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA----v~~i-M~~Vd~VivG 568 (630)
...|+..|+..+-..+...+.+.| + |+++|..|.. +..+. .|+.+.+ -|.. +... +.++|.||+.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g--~-v~vid~~~~~-----~~~~~-~~~~~i~-gd~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVR-----KKVLR-SGANFVH-GDPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSE--E-EEEESCGGGH-----HHHHH-TTCEEEE-SCTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECCChHHHHHHHHHHhCC--e-EEEEECCHHH-----HHHHh-cCCeEEE-cCCCCHHHHHhcCcchhcEEEEc
Confidence 457888898777666666665443 5 8888876642 34444 6765533 3322 1122 5578888765
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCc--EEEeccc
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVP--VLICCEA 604 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VP--V~V~aet 604 (630)
.+ +..-...+++.|+.++.. +++-+..
T Consensus 79 ~~---------~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 79 LE---------SDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp CS---------CHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred CC---------CcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 42 223456788889988764 4444433
No 208
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=39.46 E-value=2.6e+02 Score=27.72 Aligned_cols=98 Identities=13% Similarity=0.039 Sum_probs=53.9
Q ss_pred CEEEeecC-hHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc--ccc
Q 006803 495 DVLLTYGS-SCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH--EVT 563 (630)
Q Consensus 495 dvILT~g~-S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd 563 (630)
+.|+..+. +..+..+|..+.+ ..-+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+. ++.
T Consensus 65 ~~v~~~~sgt~al~~~~~~~~~--~gd~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~ 140 (411)
T 3nnk_A 65 WTMLVDGTSRAGIEAILVSAIR--PGDKVLVPV--FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPR 140 (411)
T ss_dssp EEEEEESCHHHHHHHHHHHHCC--TTCEEEEEE--CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCS
T ss_pred cEEEECCCcHHHHHHHHHHhcC--CCCEEEEec--CCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCe
Confidence 33444444 3344455554433 334566655 555565555667778988877752 23333443 566
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|++-. .=...|.+.. + -.|+-+|+.|++.++|
T Consensus 141 ~v~~~~-~~nptG~~~~-l--~~i~~l~~~~~~~li~ 173 (411)
T 3nnk_A 141 LLLTVQ-GDTSTTMLQP-L--AELGEICRRYDALFYT 173 (411)
T ss_dssp EEEEES-EETTTTEECC-C--TTHHHHHHHHTCEEEE
T ss_pred EEEEeC-CCCCcceecc-H--HHHHHHHHHcCCEEEE
Confidence 666532 2223344433 2 2577788999998776
No 209
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=39.31 E-value=1.1e+02 Score=30.67 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhccCCCEEEe-ecChHHHHHHHHHHHHcCCceEEEEcCC-----CCCc---hHHHHHHHHHhCCCcEEEE
Q 006803 480 DKVIVRHAATKVRDGDVLLT-YGSSCVVEMILLYAHELGKQFRVVVVDS-----RPKH---EGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 480 ~~~Ia~~a~~~I~dgdvILT-~g~S~tV~~vL~~A~e~gk~f~ViV~ES-----RP~~---eG~~La~eL~~~GI~vTlI 550 (630)
.+.|+..+++.|.||++|-+ +|-...|..++...+ ++.+.+.. |+ .|.. .+.. ..|.. .+..+
T Consensus 8 ~e~Ia~~aA~~i~dG~~v~lGiGiP~~va~~~~~~~--~~~l~l~~-E~G~lg~~p~~~~~~~~d--~~~~~---~a~~~ 79 (260)
T 1poi_B 8 KEMQAVTIAKQIKNGQVVTVGTGLPLIGASVAKRVY--APDCHIIV-ESGLMDCSPVEVPRSVGD--LRFMA---HCGCI 79 (260)
T ss_dssp HHHHHHHHHTTCCTTCEEECCSSHHHHHHHHHHHTT--CTTCEEEE-TTTEEEECCSSCCSSTTC--HHHHT---SEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHHHhc--CCCEEEEE-eCceecCcccCcccCccC--CCcEe---ehhhh
Confidence 45789999999999998865 563334444544432 45555443 43 3321 1100 11111 34456
Q ss_pred cchhHHH-H-----hc--cccEEEEcceeEecCCcee
Q 006803 551 HINAVSY-I-----MH--EVTRVFLGASSVLSNGTTY 579 (630)
Q Consensus 551 ~DsAv~~-i-----M~--~Vd~VivGAdaI~aNG~V~ 579 (630)
.++.-.| + +. ++|..|+||--|-.+|.+.
T Consensus 80 ~~~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn 116 (260)
T 1poi_B 80 WPNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVN 116 (260)
T ss_dssp CCHHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEE
T ss_pred cCHHHHhcccchhhhhcCCccEEEeChHHhCCCCCcc
Confidence 6654443 3 33 7999999999999999998
No 210
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=39.24 E-value=2.4e+02 Score=26.42 Aligned_cols=37 Identities=0% Similarity=-0.202 Sum_probs=29.2
Q ss_pred chHHHHHHHHHhCCCcEEEEcchhHHHHhccc---cEEEE
Q 006803 531 HEGQALLRRLLAKGLSCTYTHINAVSYIMHEV---TRVFL 567 (630)
Q Consensus 531 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~V---d~Viv 567 (630)
.+=..+++.+.+.|+++..||++.-+.+-+.+ |.+|.
T Consensus 128 ~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~ 167 (201)
T 3trj_A 128 ENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELR 167 (201)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEE
Confidence 34455668888899999999998877777778 88875
No 211
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=39.23 E-value=1e+02 Score=31.06 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=52.0
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCc-EEEEcchhH-HHH--h---ccccEE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS-CTYTHINAV-SYI--M---HEVTRV 565 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~-vTlI~DsAv-~~i--M---~~Vd~V 565 (630)
...+++|-|.+..+.. +..+...| -+|++.+ |.+.|...+ +...|+. +.++....- .+. + .++..|
T Consensus 95 ~~~v~~~~G~~~al~~-~~~~~~~g--d~Vl~~~--p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v 167 (400)
T 3asa_A 95 AKEIFISDGAKVDLFR-LLSFFGPN--QTVAIQD--PSYPAYLDI--ARLTGAKEIIALPCLQENAFFPEFPEDTHIDIL 167 (400)
T ss_dssp GGGEEEESCHHHHHHH-HHHHHCSS--CEEEEEE--SCCHHHHHH--HHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEE
T ss_pred HHHEEEccChHHHHHH-HHHHcCCC--CEEEECC--CCcHHHHHH--HHHcCCcceEecccchhcCcccChhhccCccEE
Confidence 4467788776655554 44444333 3566643 777665433 4456888 777753211 111 1 234555
Q ss_pred EEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++- ..-...|.++..-=-..|+-+|+.|++.+++
T Consensus 168 ~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (400)
T 3asa_A 168 CLC-SPNNPTGTVLNKDQLRAIVHYAIEHEILILF 201 (400)
T ss_dssp EEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEe-CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 553 2112224443321122466678999997765
No 212
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=39.02 E-value=84 Score=30.39 Aligned_cols=96 Identities=17% Similarity=0.070 Sum_probs=50.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc--cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH--EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~ 564 (630)
.+++|.|-+..+..++..+.+ -+|++.+ |.+.|..+...+...|+.+..+.- ..+-..+. ++..
T Consensus 54 ~v~~t~g~t~a~~~~~~~~~~----d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 127 (353)
T 2yrr_A 54 VAALAGSGSLGMEAGLANLDR----GPVLVLV--NGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRM 127 (353)
T ss_dssp EEEESSCHHHHHHHHHHTCSC----CCEEEEE--CSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSE
T ss_pred eEEEcCCcHHHHHHHHHHhcC----CcEEEEc--CCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCE
Confidence 455665555554444443321 2466553 334444333445667888877752 22333333 3555
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++ ...-...|.+.. --.++-+|+.||+.+++
T Consensus 128 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 159 (353)
T 2yrr_A 128 VAL-VHGETSTGVLNP---AEAIGALAKEAGALFFL 159 (353)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEE
T ss_pred EEE-EccCCCcceecC---HHHHHHHHHHcCCeEEE
Confidence 544 333334466554 24677788889987776
No 213
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=38.80 E-value=1.6e+02 Score=29.93 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=53.4
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch------------------hHH
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN------------------AVS 556 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds------------------Av~ 556 (630)
.+++|.|.+..+..++..+...| -+|++.+ |.+.|...+ +...|+.+..+... .+-
T Consensus 103 ~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 176 (429)
T 1yiz_A 103 EVLVTVGAYEALYATIQGHVDEG--DEVIIIE--PFFDCYEPM--VKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELE 176 (429)
T ss_dssp SEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHHH--HHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHH
T ss_pred CEEEecChHHHHHHHHHHhcCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEEeCCcccccccccccCcccCHHHHH
Confidence 67788777776666666554333 3566654 666664433 34568877766421 122
Q ss_pred HHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 557 YIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 557 ~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..+. ++..|++- .---..|.++.+-=--.|+-+|+.|++.+++
T Consensus 177 ~~l~~~~~~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 220 (429)
T 1yiz_A 177 ALFNEKTKMIIIN-TPHNPLGKVMDRAELEVVANLCKKWNVLCVS 220 (429)
T ss_dssp HHCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhccCceEEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 2232 34445442 2212234443322233566778899997776
No 214
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=38.71 E-value=48 Score=35.27 Aligned_cols=112 Identities=15% Similarity=0.082 Sum_probs=62.9
Q ss_pred cCCCEEEeecChHHHH-HHHHHHHHcCC-ceEEEEcCCCCCch-HH-HH-----------H---HHHHhCCCcEEEEcch
Q 006803 492 RDGDVLLTYGSSCVVE-MILLYAHELGK-QFRVVVVDSRPKHE-GQ-AL-----------L---RRLLAKGLSCTYTHIN 553 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~-~vL~~A~e~gk-~f~ViV~ESRP~~e-G~-~L-----------a---~eL~~~GI~vTlI~Ds 553 (630)
..+.+||..|-++.+= .+++...+.+. ..+|+++.-++..+ .. ++ . ..+...+|.+.. .|-
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~-~Dl 149 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVA-GDK 149 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEE-CCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEE-eEC
Confidence 3478899999888664 34444445432 36888887554422 11 11 0 111123443332 232
Q ss_pred ----------hHHHHhccccEEEEcceeEecC----CceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 554 ----------AVSYIMHEVTRVFLGASSVLSN----GTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 554 ----------Av~~iM~~Vd~VivGAdaI~aN----G~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.+..++.++|.||--|-.+-.+ ---.|-.||..++-+|+.+++.-+|.+.+
T Consensus 150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS 214 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST 214 (478)
T ss_dssp TSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred CCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 4666777888887655322111 01247889999999999999854444444
No 215
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=38.67 E-value=76 Score=27.12 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=47.4
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh-
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA- 593 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~- 593 (630)
+..+|+|+|..+.. ...+...|...|+.+....+.. +..+-. ..|.||+..+- .+ .-|.-.+..+.+.
T Consensus 6 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 6 KNYTVMLVDDEQPI-LNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PE-----MGGEVFLEQVAKSY 77 (154)
T ss_dssp SCCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SS-----SCHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CC-----CCHHHHHHHHHHhC
Confidence 45678888877543 3345567777888877655432 222222 47888886542 22 2243334444443
Q ss_pred CCCcEEEeccccc
Q 006803 594 FRVPVLICCEAYK 606 (630)
Q Consensus 594 ~~VPV~V~aet~K 606 (630)
.++||++++....
T Consensus 78 ~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 78 PDIERVVISGYAD 90 (154)
T ss_dssp TTSEEEEEECGGG
T ss_pred CCCcEEEEecCCC
Confidence 4799999876543
No 216
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=38.64 E-value=1.7e+02 Score=27.33 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=62.0
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc------
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------ 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 560 (630)
.|.+||..|-++-+= .+.+...++| .+|++++-++ .....+..+|...|-.+.++ +| ..+..++.
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 86 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINA-DAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEcCCH-HHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 467888888777554 4444455555 5788776543 23345567777777666655 34 33444444
Q ss_pred -cccEEEEcceeEecCCce------------ecccchHHHHHHHH----hCCCcEEEecc
Q 006803 561 -EVTRVFLGASSVLSNGTT------------YSRVGTACVAMVAH----AFRVPVLICCE 603 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V------------~NKiGT~~lAlaAk----~~~VPV~V~ae 603 (630)
.+|.||--|-.. ..+.+ +|-.|++.+.-.+. ..+...+|...
T Consensus 87 ~~~d~vi~~Ag~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~s 145 (255)
T 1fmc_A 87 GKVDILVNNAGGG-GPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTIT 145 (255)
T ss_dssp SSCCEEEECCCCC-CCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCEEEECCCCC-CCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 688888765322 22211 56778887776653 33555565443
No 217
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=38.36 E-value=28 Score=30.55 Aligned_cols=55 Identities=9% Similarity=-0.039 Sum_probs=35.8
Q ss_pred HHHhCCCcEEEEc--chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 539 RLLAKGLSCTYTH--INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 539 eL~~~GI~vTlI~--DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
...+.||++.... .+.+...+.+.|.|++|-..-+.-. .+--.|..+||||.|+-
T Consensus 29 ~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~---------~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 29 GANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYR---------EMKVDAERLGIQIVATR 85 (108)
T ss_dssp HHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHH---------HHHHHHTTTTCEEEECC
T ss_pred HHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHH---------HHHHHhhhcCCcEEEeC
Confidence 3444677777743 4445556678999999986543221 24445667899999974
No 218
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=38.15 E-value=1.7e+02 Score=29.29 Aligned_cols=97 Identities=8% Similarity=0.024 Sum_probs=49.3
Q ss_pred CCCEEE--eecChHHHHHHHHHHHH-cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----------hHHHHh
Q 006803 493 DGDVLL--TYGSSCVVEMILLYAHE-LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----------AVSYIM 559 (630)
Q Consensus 493 dgdvIL--T~g~S~tV~~vL~~A~e-~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM 559 (630)
...+++ |.|-+..+..++..... .+..-+|++.+ |.+.+..-+ +...|..+..+... .+-..+
T Consensus 94 ~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~--p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 169 (401)
T 7aat_A 94 SGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPK--PSWGNHTPI--FRDAGLQLQAYRYYDPKTCSLDFTGAMEDI 169 (401)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEE--SCCTTHHHH--HHHTTCEEEEEECEETTTTEECHHHHHHHH
T ss_pred cCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcC--CCchhHHHH--HHHcCCeeEeeeeeccccCccCHHHHHHHH
Confidence 445655 77777666544443321 12223566553 666555333 34568777776521 111122
Q ss_pred cc----ccEEEEcceeEecCCceecccc-------hHHHHHHHHhCCCcEEEe
Q 006803 560 HE----VTRVFLGASSVLSNGTTYSRVG-------TACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 560 ~~----Vd~VivGAdaI~aNG~V~NKiG-------T~~lAlaAk~~~VPV~V~ 601 (630)
.+ ..+|++. ..-|.+| -..|+-+|+.|++.+++=
T Consensus 170 ~~~~~~~~~v~i~--------~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 214 (401)
T 7aat_A 170 SKIPEKSIILLHA--------CAHNPTGVDPRQEQWKELASVVKKRNLLAYFD 214 (401)
T ss_dssp TTSCTTCEEEEES--------SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HhCCCCcEEEEeC--------CCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEc
Confidence 21 2222221 2335666 346777889999877663
No 219
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=38.13 E-value=1.3e+02 Score=30.40 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=48.6
Q ss_pred CEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHh-ccccEEEEcceeE
Q 006803 495 DVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIM-HEVTRVFLGASSV 572 (630)
Q Consensus 495 dvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM-~~Vd~VivGAdaI 572 (630)
..|+.+|-.++=.. +-+.++++ .++|.+.|.++... +..+|.+.||++.+-.+. ..+. ..+|.||++.- |
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~--G~~V~~~D~~~~~~---~~~~L~~~gi~v~~g~~~--~~l~~~~~d~vV~Spg-i 76 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEA--GFEVSGCDAKMYPP---MSTQLEALGIDVYEGFDA--AQLDEFKADVYVIGNV-A 76 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHT--TCEEEEEESSCCTT---HHHHHHHTTCEEEESCCG--GGGGSCCCSEEEECTT-C
T ss_pred cEEEEEEECHHHHHHHHHHHHhC--CCEEEEEcCCCCcH---HHHHHHhCCCEEECCCCH--HHcCCCCCCEEEECCC-c
Confidence 34555554333222 22233344 47899999887643 456788899988754442 2333 46888877542 2
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEE
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVL 599 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~ 599 (630)
-. ....-..|++.||||+
T Consensus 77 ~~---------~~p~~~~a~~~gi~v~ 94 (326)
T 3eag_A 77 KR---------GMDVVEAILNLGLPYI 94 (326)
T ss_dssp CT---------TCHHHHHHHHTTCCEE
T ss_pred CC---------CCHHHHHHHHcCCcEE
Confidence 11 1233345566666665
No 220
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=38.13 E-value=59 Score=32.76 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=53.4
Q ss_pred ccCCCEEEeecChHHHHHHHHHHHHcCC---ceEEEEcCCCCCchHHHHHH-H---HHhCCCcEEEEcch---------h
Q 006803 491 VRDGDVLLTYGSSCVVEMILLYAHELGK---QFRVVVVDSRPKHEGQALLR-R---LLAKGLSCTYTHIN---------A 554 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~~vL~~A~e~gk---~f~ViV~ESRP~~eG~~La~-e---L~~~GI~vTlI~Ds---------A 554 (630)
+....+|+|-|.+..+..++..+...|. .-+|++.| .|.+.|..... . +...++.+..+.+. .
T Consensus 96 ~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (417)
T 3g7q_A 96 IEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPL-APEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEH 174 (417)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESS-CCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGG
T ss_pred CCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeC-CCccccchhhccchhhhccccCcccccCCcccccccCHHH
Confidence 3445788887777766666665543322 23677764 36666654432 1 22345555444322 1
Q ss_pred HHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 555 VSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 555 v~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+- +-.++.+|++. ..--..|.++..---..|+-+|+.|++.+++=
T Consensus 175 l~-~~~~~~~v~~~-~p~NptG~~~~~~~~~~l~~~a~~~~~~li~D 219 (417)
T 3g7q_A 175 LH-IGEETGMICVS-RPTNPTGNVITDEELMKLDRLANQHNIPLVID 219 (417)
T ss_dssp CC-CCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred hc-cccCceEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEEEEe
Confidence 11 11123333332 11122333333333456777899999988873
No 221
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=38.09 E-value=1.5e+02 Score=29.49 Aligned_cols=100 Identities=12% Similarity=0.147 Sum_probs=53.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------------hhHHHHh
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------------NAVSYIM 559 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------------sAv~~iM 559 (630)
..+++|-|.+..+..++..+...| -+|++.+ |.+.+.. ..+...|..+..+.. ..+-..+
T Consensus 103 ~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 176 (407)
T 3nra_A 103 DGLIITPGTQGALFLAVAATVARG--DKVAIVQ--PDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF 176 (407)
T ss_dssp TSEEEESHHHHHHHHHHHTTCCTT--CEEEEEE--SCCTHHH--HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHH
T ss_pred CcEEEeCCcHHHHHHHHHHhCCCC--CEEEEcC--CcccchH--HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHH
Confidence 467777666666555555443323 3555533 5555543 334456777766642 2233333
Q ss_pred c-cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 560 H-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 560 ~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
. +...|++ .+.-...|.++..----.|+-+|+.|++.+++
T Consensus 177 ~~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 177 KAGARVFLF-SNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217 (407)
T ss_dssp HTTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hhCCcEEEE-cCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 3 4555554 22222235544433345677788999998876
No 222
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=38.05 E-value=3.2e+02 Score=27.26 Aligned_cols=72 Identities=10% Similarity=-0.034 Sum_probs=40.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---hHHHHhc-----cccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---AVSYIMH-----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
+|++.+ |.+.+..... ...|+.+..+..+ .+-.++. ++..|++ ...-...|.+.. --.|+-+|+
T Consensus 134 ~Vl~~~--~~~~~~~~~~--~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~ 205 (401)
T 2bwn_A 134 IIYSDS--LNHASMIEGI--KRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAF-ESVYSMDGDFGP---IKEICDIAE 205 (401)
T ss_dssp EEEEET--TCCHHHHHHH--HHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEE-ESBCTTTCCBCC---HHHHHHHHH
T ss_pred EEEECc--hhhHHHHHHH--HHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEE-ecCcCCCCCcCC---HHHHHHHHH
Confidence 555544 6665544433 3478888888632 3334443 2333333 222233455554 356778899
Q ss_pred hCCCcEEE
Q 006803 593 AFRVPVLI 600 (630)
Q Consensus 593 ~~~VPV~V 600 (630)
+|++.++|
T Consensus 206 ~~~~~li~ 213 (401)
T 2bwn_A 206 EFGALTYI 213 (401)
T ss_dssp HHTCEEEE
T ss_pred HcCCEEEE
Confidence 99987776
No 223
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=37.92 E-value=1.4e+02 Score=27.90 Aligned_cols=102 Identities=9% Similarity=0.099 Sum_probs=61.6
Q ss_pred CCEEEeecChH--HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEcc------hhHHHHhc--cc
Q 006803 494 GDVLLTYGSSC--VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTHI------NAVSYIMH--EV 562 (630)
Q Consensus 494 gdvILT~g~S~--tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~D------sAv~~iM~--~V 562 (630)
|.+.|+..... -+..+.+..++.=..|++|.+++ .++.|.+ .||+|+.+.- .-+..+|. +|
T Consensus 12 g~V~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT~g--------Ta~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geI 83 (152)
T 1b93_A 12 KHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGT--------TGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKI 83 (152)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETT--------HHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCC
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHHhCCCEEEEccH--------HHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCc
Confidence 44445543333 23334443333312689999887 4577777 8999999842 23555665 69
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccccc
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
|+||-=-|-. |.-....-.+.|=-+|-.||||++---.+-+
T Consensus 84 dlVInt~~pl---~~~~h~~D~~~IrR~A~~~~IP~~T~latA~ 124 (152)
T 1b93_A 84 DVLIFFWDPL---NAVPHDPDVKALLRLATVWNIPVATNVATAD 124 (152)
T ss_dssp CEEEEECCTT---SCCTTHHHHHHHHHHHHHTTCCEESSHHHHH
T ss_pred cEEEEcCCcc---cCCcccccHHHHHHHHHHcCCCEEeCHHHHH
Confidence 9998643300 3222234457788889999999986544444
No 224
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=37.87 E-value=1.5e+02 Score=27.40 Aligned_cols=35 Identities=23% Similarity=0.093 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 534 QALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 534 ~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
..+++.+.+.|+++..||++.-+.+-+.+|.+|.-
T Consensus 109 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 143 (201)
T 3fxa_A 109 LNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV 143 (201)
T ss_dssp HTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 44568888899999999998888888889999864
No 225
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=37.72 E-value=2.4e+02 Score=30.87 Aligned_cols=116 Identities=12% Similarity=0.032 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhcc--CCCEEEeecChH----HHHHHHHHHHHcCCceEEEEcCCCCCc-hHHHHHHHHHhCCCcEEEE
Q 006803 478 LADKVIVRHAATKVR--DGDVLLTYGSSC----VVEMILLYAHELGKQFRVVVVDSRPKH-EGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 478 ~A~~~Ia~~a~~~I~--dgdvILT~g~S~----tV~~vL~~A~e~gk~f~ViV~ESRP~~-eG~~La~eL~~~GI~vTlI 550 (630)
.|-..+++...+++. .+..|+.+|-.+ --+-+-+++++.|.+.+||++... .. +.+.-...|.+.|+++.
T Consensus 34 ~Ag~a~a~~i~~~~~~~~~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~g~~~~-- 110 (502)
T 3rss_A 34 RAGISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKK-KTPDCEYNYGLYKKFGGKVV-- 110 (502)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSS-CCHHHHHHHHHHHHTTCCEE--
T ss_pred HHHHHHHHHHHHhcCccCCCEEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEECCC-CCHHHHHHHHHHHhCCCcee--
Confidence 344455555555554 456888887544 333344555667877788777544 22 22333477888999875
Q ss_pred cchhHHHHhccccEEEEcceeEecCCceecccchHHHHH-HHHhCCCcEEE
Q 006803 551 HINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAM-VAHAFRVPVLI 600 (630)
Q Consensus 551 ~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAl-aAk~~~VPV~V 600 (630)
. ......+...|.|| |+|+--|---.--|-+.-.+ ..+..+.||+-
T Consensus 111 ~-~~~~~~~~~~dliV---DalfG~Gl~~~l~~~~~~~i~~iN~~~~~vvA 157 (502)
T 3rss_A 111 E-QFEPSILNEFDVVV---DAIFGTGLRGEITGEYAEIINLVNKSGKVVVS 157 (502)
T ss_dssp S-CCCGGGGGGCSEEE---EESCSTTCCSCCCHHHHHHHHHHHTTCCEEEE
T ss_pred c-ccccccCCCCCEEE---EeCccCCCCCCCcHHHHHHHHHHHcCCCCEEE
Confidence 1 11112345678765 77776664322234333222 23455677653
No 226
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=37.62 E-value=2.6e+02 Score=26.13 Aligned_cols=35 Identities=6% Similarity=-0.131 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEE
Q 006803 533 GQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL 567 (630)
Q Consensus 533 G~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 567 (630)
=.++++.+.+.|+++..||++.-+.+.+.+|.+|.
T Consensus 147 ~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~ 181 (212)
T 2i2w_A 147 VIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIR 181 (212)
T ss_dssp HHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEE
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 34556888889999999999887778788998876
No 227
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=37.56 E-value=2.1e+02 Score=30.24 Aligned_cols=97 Identities=12% Similarity=-0.034 Sum_probs=59.1
Q ss_pred CCCEEEeecChH-----HHHHHHHHHHHcCCceEEEEcC-CCCCchHHHHHHHHHhCCCc---EEEEc---chhHHHHhc
Q 006803 493 DGDVLLTYGSSC-----VVEMILLYAHELGKQFRVVVVD-SRPKHEGQALLRRLLAKGLS---CTYTH---INAVSYIMH 560 (630)
Q Consensus 493 dgdvILT~g~S~-----tV~~vL~~A~e~gk~f~ViV~E-SRP~~eG~~La~eL~~~GI~---vTlI~---DsAv~~iM~ 560 (630)
++..|+..|+-. .+...+....+....++++++- ..|. -..|-..+.+.|+. ++++- +.-+..+|.
T Consensus 375 ~~~~v~~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~--~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~ 452 (568)
T 2vsy_A 375 EQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEA--DARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYR 452 (568)
T ss_dssp TTSCEEEECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTH--HHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGG
T ss_pred CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHH--HHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHh
Confidence 445666655543 3344444444556678877776 3322 23444666778886 55542 246788899
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
.+|.+|+-... + .| ...+=|-..|+||+++.
T Consensus 453 ~adv~v~ps~~---~------~g--~~~lEAma~G~Pvv~~~ 483 (568)
T 2vsy_A 453 HADLFLDTHPY---N------AH--TTASDALWTGCPVLTTP 483 (568)
T ss_dssp GCSEEECCSSS---C------CS--HHHHHHHHTTCCEEBCC
T ss_pred cCCEEeeCCCC---C------Cc--HHHHHHHhCCCCEEecc
Confidence 99998875432 1 22 35567778899999853
No 228
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=37.50 E-value=29 Score=32.24 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=46.3
Q ss_pred cChHHHHHHHHHHHH-cCC--ceEEEEcCCCCCchH----HHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc
Q 006803 501 GSSCVVEMILLYAHE-LGK--QFRVVVVDSRPKHEG----QALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 501 g~S~tV~~vL~~A~e-~gk--~f~ViV~ESRP~~eG----~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
|+|..++.++++..+ .|. .|.|.-.-+.|+..| .+....|.+.||+.....-.--...+...|.||.=
T Consensus 16 cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~~~~DlIl~M 90 (161)
T 3jvi_A 16 CRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFKNFDYIFAM 90 (161)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCCCCBCCBCCHHHHHHCSEEEES
T ss_pred hHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCCCCeeeECCHHHhcCCCEEEEe
Confidence 678899999998654 443 688888888987666 34558899999986432221122344567888754
No 229
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=37.40 E-value=1.6e+02 Score=29.39 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=60.3
Q ss_pred cCCCEEEeecChH-------HHHHHHHHHHHcC--CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc----chhHHHH
Q 006803 492 RDGDVLLTYGSSC-------VVEMILLYAHELG--KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH----INAVSYI 558 (630)
Q Consensus 492 ~dgdvILT~g~S~-------tV~~vL~~A~e~g--k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----DsAv~~i 558 (630)
.++.+|+..|+-. .+...+....+.+ ..++++++-..+......+-....+.| ++.++. +..+..+
T Consensus 249 ~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~ 327 (439)
T 3fro_A 249 DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVREL 327 (439)
T ss_dssp CSCEEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHH
T ss_pred CCCcEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHH
Confidence 4445677777544 2334444444444 678888887666332244444455567 666543 4668889
Q ss_pred hccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 559 MHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
|..+|.+|+-... .| .| ...+=|-.+|+||++.
T Consensus 328 ~~~adv~v~ps~~---e~-----~~--~~~~EAma~G~Pvi~s 360 (439)
T 3fro_A 328 YGSVDFVIIPSYF---EP-----FG--LVALEAMCLGAIPIAS 360 (439)
T ss_dssp HTTCSEEEECBSC---CS-----SC--HHHHHHHHTTCEEEEE
T ss_pred HHHCCEEEeCCCC---CC-----cc--HHHHHHHHCCCCeEEc
Confidence 9999999876532 22 22 3345577789999875
No 230
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=37.36 E-value=31 Score=35.40 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=54.6
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCC------------ceEEEEcCCCCCchHHHHH----HHHHhCCCcEEEEc----
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGK------------QFRVVVVDSRPKHEGQALL----RRLLAKGLSCTYTH---- 551 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk------------~f~ViV~ESRP~~eG~~La----~eL~~~GI~vTlI~---- 551 (630)
...++|+|-|.+..+..++..+...|. .-+|+++++ |.+.+...+ ..|...|+.+..+.
T Consensus 105 ~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (444)
T 3if2_A 105 TSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLT-PEYIGYSDVHVEGQHFAAVLPHIDEVTHDGE 183 (444)
T ss_dssp CGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSS-SCCGGGTTCCSSSCCEEECCCEEEEEEETTE
T ss_pred CHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCC-CCccchhhcccccchhhccCceEEecccccc
Confidence 345788887766666555554433332 015666542 333333221 13556677766554
Q ss_pred --------c-hhHHHH---h-ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 552 --------I-NAVSYI---M-HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 552 --------D-sAv~~i---M-~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
| ..+-.. + .++.+|++- ..--..|.++..---..|+-+|+.|++.|++
T Consensus 184 ~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~-~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 244 (444)
T 3if2_A 184 EGFFKYRVDFEALENLPALKEGRIGAICCS-RPTNPTGNVLTDEEMAHLAEIAKRYDIPLII 244 (444)
T ss_dssp EEEEEEECCHHHHHTCHHHHTTCEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred cCccccCCCHHHHHHHHHhcCCCceEEEeC-CCCCCCCCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 2 122222 1 234445442 1112334444433345577779999999887
No 231
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=37.32 E-value=1.4e+02 Score=30.40 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=59.8
Q ss_pred HHHhhccC-CCEEEe-ecChHHHHHHHHHH---HH---cCCceEEEEc-CCC---CCch-HHHHHHHHHhCCCcEE-EEc
Q 006803 486 HAATKVRD-GDVLLT-YGSSCVVEMILLYA---HE---LGKQFRVVVV-DSR---PKHE-GQALLRRLLAKGLSCT-YTH 551 (630)
Q Consensus 486 ~a~~~I~d-gdvILT-~g~S~tV~~vL~~A---~e---~gk~f~ViV~-ESR---P~~e-G~~La~eL~~~GI~vT-lI~ 551 (630)
+..++|.. +-++|- .+-..+++..++.| .+ ...-+++.|. |.+ |... -.+.+++|.+.|+.+- |+.
T Consensus 64 ~~~~~i~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~ 143 (265)
T 1wv2_A 64 NLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTS 143 (265)
T ss_dssp ------CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hHHhhhhhcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 33456654 566763 22333555555443 34 2234677777 444 3333 3445699999999988 777
Q ss_pred chh-HHHHhc--cccEEEE-cceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 552 INA-VSYIMH--EVTRVFL-GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 552 DsA-v~~iM~--~Vd~Viv-GAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
|+- .+.-+. .++.|+- |+. |-.+=++.| -..|-.+.+..++|||+-+.
T Consensus 144 dd~~~akrl~~~G~~aVmPlg~p-IGsG~Gi~~---~~lI~~I~e~~~vPVI~eGG 195 (265)
T 1wv2_A 144 DDPIIARQLAEIGCIAVMPLAGL-IGSGLGICN---PYNLRIILEEAKVPVLVDAG 195 (265)
T ss_dssp SCHHHHHHHHHSCCSEEEECSSS-TTCCCCCSC---HHHHHHHHHHCSSCBEEESC
T ss_pred CCHHHHHHHHHhCCCEEEeCCcc-CCCCCCcCC---HHHHHHHHhcCCCCEEEeCC
Confidence 653 344444 3555544 321 111112222 34667777788999998543
No 232
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=37.30 E-value=2.3e+02 Score=28.27 Aligned_cols=96 Identities=7% Similarity=-0.067 Sum_probs=51.4
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHHhcc-----ccEEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYIMHE-----VTRVF 566 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~-----Vd~Vi 566 (630)
++++|.|-+..+..++..+.. +.-.|++. .|.+.+...+ +...|..+..+.. ..+-..+.. +..|+
T Consensus 105 ~v~~~~ggt~a~~~~~~~~~~--~gd~V~~~--~p~~~~~~~~--~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~ 178 (398)
T 3a2b_A 105 AAILFSTGFQSNLGPLSCLMG--RNDYILLD--ERDHASIIDG--SRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLIC 178 (398)
T ss_dssp EEEEESSHHHHHHHHHHHSSC--TTCEEEEE--TTCCHHHHHH--HHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhC--CCCEEEEC--CccCHHHHHH--HHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEE
Confidence 567776666555555554432 33345544 3555554433 4446888777753 233334433 33444
Q ss_pred EcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 567 LGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 567 vGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+. ..-...|.+.. --.|+-+|+.|++.+++
T Consensus 179 ~~-~~~nptG~~~~---~~~l~~~~~~~~~~li~ 208 (398)
T 3a2b_A 179 TD-GIFSMEGDIVN---LPELTSIANEFDAAVMV 208 (398)
T ss_dssp EE-SBCTTTCCBCC---HHHHHHHHHHHTCEEEE
T ss_pred Ee-CCCCCCCCccC---HHHHHHHHHHcCcEEEE
Confidence 32 22222354443 35677888899987776
No 233
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=37.29 E-value=3e+02 Score=27.29 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=55.5
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHHhc-c
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYIMH-E 561 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~ 561 (630)
....+++|.|.+..+..++..+.+.|+ -+|++.+ |.+.|... .+...|+.+..+... .+-..+. +
T Consensus 98 ~~~~i~~~~g~~~al~~~~~~l~~~g~-d~vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~ 172 (398)
T 3ele_A 98 NADNLYMTMGAAASLSICFRALTSDAY-DEFITIA--PYFPEYKV--FVNAAGARLVEVPADTEHFQIDFDALEERINAH 172 (398)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCSTT-CEEEEES--SCCTHHHH--HHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTT
T ss_pred ChHHEEEccCHHHHHHHHHHHHcCCCC-CEEEEeC--CCchhhHH--HHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcC
Confidence 345678887777766666665544441 3555543 45555433 344568888887532 2222222 3
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHh------CCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHA------FRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~------~~VPV~V 600 (630)
+..|++- .---..|.++..---..++-+|+. |++.+++
T Consensus 173 ~~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 216 (398)
T 3ele_A 173 TRGVIIN-SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIA 216 (398)
T ss_dssp EEEEEEC-SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred CCEEEEc-CCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEE
Confidence 4455442 222233444443334455566776 8887776
No 234
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=37.23 E-value=64 Score=27.21 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHH-
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH- 592 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk- 592 (630)
....+|+|+|..+.. ...+...|...|+.|....+.. +..+-. ..|.||+..+- .+ .-|--.+..+-+
T Consensus 6 ~~~~~iLivd~~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~~ 77 (147)
T 2zay_A 6 GKWWRIMLVDTQLPA-LAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PK-----ISGMDLFNSLKKN 77 (147)
T ss_dssp --CEEEEEECTTGGG-GHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SS-----SCHHHHHHHHHTS
T ss_pred CCCceEEEEeCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CC-----CCHHHHHHHHHcC
Confidence 456789999887754 3445577777888887665432 222222 58999887543 22 124333444443
Q ss_pred --hCCCcEEEeccccc
Q 006803 593 --AFRVPVLICCEAYK 606 (630)
Q Consensus 593 --~~~VPV~V~aet~K 606 (630)
..++||++++....
T Consensus 78 ~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 78 PQTASIPVIALSGRAT 93 (147)
T ss_dssp TTTTTSCEEEEESSCC
T ss_pred cccCCCCEEEEeCCCC
Confidence 45799999977543
No 235
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=37.12 E-value=64 Score=27.51 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=41.7
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH-HHhc--cccEEEEcceeEecCCceecccchHHHHHHHH--
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS-YIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH-- 592 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk-- 592 (630)
+.++|+|+|..|.. ...|...|...|+.+....+..-+ ..+. ..|.||+-.+ +.++ -|.-.+..+-+
T Consensus 13 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~-----~g~~~~~~lr~~~ 84 (143)
T 3m6m_D 13 RSMRMLVADDHEAN-RMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGM-----NGLDMLKQLRVMQ 84 (143)
T ss_dssp --CEEEEECSSHHH-HHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHhch
Confidence 45678888876653 233446677778877766553222 1222 5788887543 3332 23333333321
Q ss_pred ---hCCCcEEEecccc
Q 006803 593 ---AFRVPVLICCEAY 605 (630)
Q Consensus 593 ---~~~VPV~V~aet~ 605 (630)
...+|+++++...
T Consensus 85 ~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 85 ASGMRYTPVVVLSADV 100 (143)
T ss_dssp HTTCCCCCEEEEESCC
T ss_pred hccCCCCeEEEEeCCC
Confidence 1358999987643
No 236
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=36.90 E-value=42 Score=32.48 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=21.3
Q ss_pred cccchHHHHHHHHhCCCcEEEecccc
Q 006803 580 SRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 580 NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 95 n~~~~~~ll~a~~~~~v~~~v~~SS~ 120 (321)
T 3vps_A 95 NVDSGRHLLALCTSVGVPKVVVGSTC 120 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEEG
T ss_pred HHHHHHHHHHHHHHcCCCeEEEecCH
Confidence 77899999999999998777765554
No 237
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=36.83 E-value=77 Score=30.17 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=55.7
Q ss_pred EEeecChHHHHHHH-HHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEccee
Q 006803 497 LLTYGSSCVVEMIL-LYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 497 ILT~g~S~tV~~vL-~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivGAda 571 (630)
||..|-++.+=.-| ..+.++...++|+++.-+|... ..|...++.+. ..| ..+..++..+|.||.-|-.
T Consensus 2 ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-----~~~~~~~~~~~-~~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKA-----QALAAQGITVR-QADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp EEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTC-----HHHHHTTCEEE-ECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred EEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhh-----hhhhcCCCeEE-EcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 67778877664444 3443431146677765444321 23444566443 233 4566778888888865432
Q ss_pred EecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 572 I~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.. + .|-.||..+.-+|+..+++-+|...+
T Consensus 76 ~~-~---~~~~~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 76 EV-G---QRAPQHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp ----------CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred Cc-h---HHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 11 1 36678999988888888876666554
No 238
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=36.73 E-value=2.8e+02 Score=27.70 Aligned_cols=39 Identities=3% Similarity=-0.049 Sum_probs=24.7
Q ss_pred hccCCCEEEeecChH-----HHHHHHHHHHHcCCceEEEEcCCC
Q 006803 490 KVRDGDVLLTYGSSC-----VVEMILLYAHELGKQFRVVVVDSR 528 (630)
Q Consensus 490 ~I~dgdvILT~g~S~-----tV~~vL~~A~e~gk~f~ViV~ESR 528 (630)
=|..|+.|+..|.++ .++.+...+..+|...-.|-.|-.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 367889999988776 455666666656644444445643
No 239
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=36.58 E-value=3.3e+02 Score=26.99 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=51.3
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHHhc-cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYIMH-EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~Vd~ 564 (630)
.+++|.|.+..+..++..+...| -+|++.+ |.+.|... .+...|+.+..+... .+-..+. ++..
T Consensus 93 ~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 166 (386)
T 1u08_A 93 DITVTAGATEALYAAITALVRNG--DEVICFD--PSYDSYAP--AIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRL 166 (386)
T ss_dssp TEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEE
T ss_pred CEEEcCChHHHHHHHHHHhCCCC--CEEEEeC--CCchhHHH--HHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEE
Confidence 67777777766666665543333 3566654 44545433 344578877776421 1222222 3444
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++- ..--..|.++..-=-..|+-+|+.|++.+++
T Consensus 167 v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 201 (386)
T 1u08_A 167 VILN-TPHNPSATVWQQADFAALWQAIAGHEIFVIS 201 (386)
T ss_dssp EEEE-SSCTTTCCCCCHHHHHHHHHHHTTSCCEEEE
T ss_pred EEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 4432 2111223333221124567788899997776
No 240
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=36.58 E-value=3.3e+02 Score=27.04 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=52.1
Q ss_pred CCEEEeecChHHHHHHHHHHHH-------cCCceEEEEcCCCCCchHHHHH-HHHHh----------CCCcEEEEcchhH
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE-------LGKQFRVVVVDSRPKHEGQALL-RRLLA----------KGLSCTYTHINAV 555 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e-------~gk~f~ViV~ESRP~~eG~~La-~eL~~----------~GI~vTlI~DsAv 555 (630)
..+++|-|-+..+..+|..+.. .|+ -+|++.+ |.+.|..+. ..+.. .+..+..+.-.-+
T Consensus 97 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~-~~vi~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (406)
T 4adb_A 97 DRVFFCNSGAEANEAALKLARKFAHDRYGSHK-SGIVAFK--NAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDI 173 (406)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEET--TCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCH
T ss_pred CeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCC-cEEEEEC--CCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcH
Confidence 3567777666666666665433 333 3455543 233332221 22221 1234554432222
Q ss_pred HHH---hc-cccEEEEcceeEecCCcee--cccchHHHHHHHHhCCCcEEE
Q 006803 556 SYI---MH-EVTRVFLGASSVLSNGTTY--SRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 556 ~~i---M~-~Vd~VivGAdaI~aNG~V~--NKiGT~~lAlaAk~~~VPV~V 600 (630)
..+ +. ++..|++- -+...|+++ ..-=--.|+-+|+.|++++++
T Consensus 174 ~~l~~~l~~~~~~v~~~--p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~ 222 (406)
T 4adb_A 174 NSASALIDDSTCAVIVE--PIQGEGGVVPASNAFLQGLRELCNRHNALLIF 222 (406)
T ss_dssp HHHHTTCSTTEEEEEEC--SEETTTTSEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCeEEEEEe--CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 222 32 34444444 356666665 444455678889999998876
No 241
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=36.58 E-value=72 Score=29.03 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=58.6
Q ss_pred EEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE--cchhHHHHhccccEEEEcceeE
Q 006803 496 VLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT--HINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 496 vILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.||..|-++.+= .+++.+.++| ++|+++.-++.. ...|. .++.+... +|... ..+..+|.||.-|-..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~-----~~~~~-~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNAGK-----ITQTH-KDINILQKDIFDLTL-SDLSDQNVVVDAYGIS 72 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCSHH-----HHHHC-SSSEEEECCGGGCCH-HHHTTCSEEEECCCSS
T ss_pred eEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCchh-----hhhcc-CCCeEEeccccChhh-hhhcCCCEEEECCcCC
Confidence 578888777553 4455555666 677777655421 22232 45543322 12222 6677889888765432
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
. ...-.|-.||..+.-+|+..+++-+|...
T Consensus 73 ~-~~~~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 73 P-DEAEKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp T-TTTTSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred c-cccchHHHHHHHHHHHHHhcCCceEEEEe
Confidence 2 22445778999999999998766555443
No 242
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=36.57 E-value=55 Score=27.68 Aligned_cols=81 Identities=11% Similarity=0.074 Sum_probs=48.4
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCC-CcEEEEcchhHH-H-Hh---ccccEEEEcceeEecCCceecccchHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKG-LSCTYTHINAVS-Y-IM---HEVTRVFLGASSVLSNGTTYSRVGTACVAMV 590 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTlI~DsAv~-~-iM---~~Vd~VivGAdaI~aNG~V~NKiGT~~lAla 590 (630)
....+|+|+|..+.. ...|...|...| +.+....+..-+ . +. ...|+||+..+ +.+ .-|.-.+..+
T Consensus 18 ~~~~~ilivdd~~~~-~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~-----~~g~~~~~~l 89 (146)
T 4dad_A 18 QGMINILVASEDASR-LAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALD-----TAELAAIEKL 89 (146)
T ss_dssp GGGCEEEEECSCHHH-HHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCC-----HHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHH-HHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCC-----ccHHHHHHHH
Confidence 356788888877654 233456777778 888877665422 2 22 35788888643 222 2243334333
Q ss_pred HH-hCCCcEEEecccc
Q 006803 591 AH-AFRVPVLICCEAY 605 (630)
Q Consensus 591 Ak-~~~VPV~V~aet~ 605 (630)
-+ ..++||++++...
T Consensus 90 ~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 90 SRLHPGLTCLLVTTDA 105 (146)
T ss_dssp HHHCTTCEEEEEESCC
T ss_pred HHhCCCCcEEEEeCCC
Confidence 33 3479999987654
No 243
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=36.54 E-value=1.4e+02 Score=24.47 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=43.9
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH--HHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh-CC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV--SYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA-FR 595 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv--~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~-~~ 595 (630)
.+|+|+|..+.. ...+...|...|+.+....+..- ..+-. ..|.||+..+ +.+. -|.-.+..+.+. ..
T Consensus 4 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~-----~g~~~~~~l~~~~~~ 75 (136)
T 1mvo_A 4 KKILVVDDEESI-VTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKL-----DGIEVCKQLRQQKLM 75 (136)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHHTTCC
T ss_pred CEEEEEECCHHH-HHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCC-----CHHHHHHHHHcCCCC
Confidence 467777776543 23344667778887766554322 22222 5788888653 2222 243334444333 57
Q ss_pred CcEEEecccc
Q 006803 596 VPVLICCEAY 605 (630)
Q Consensus 596 VPV~V~aet~ 605 (630)
+|+++++...
T Consensus 76 ~~ii~~s~~~ 85 (136)
T 1mvo_A 76 FPILMLTAKD 85 (136)
T ss_dssp CCEEEEECTT
T ss_pred CCEEEEECCC
Confidence 9999987654
No 244
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=36.40 E-value=29 Score=36.75 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=52.5
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
.|..|.+||..|.......+++.|.+.| ++|++++..|...+..++ +.-+...|....++-.+..++|.|+.|-
T Consensus 31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG--~~v~v~d~~~~~p~~~~a----d~~~~~~~~d~~~l~~~a~~~D~V~~~~ 104 (419)
T 4e4t_A 31 PILPGAWLGMVGGGQLGRMFCFAAQSMG--YRVAVLDPDPASPAGAVA----DRHLRAAYDDEAALAELAGLCEAVSTEF 104 (419)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCTTCHHHHHS----SEEECCCTTCHHHHHHHHHHCSEEEECC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCcCchhhhC----CEEEECCcCCHHHHHHHHhcCCEEEEcc
Confidence 5778999999999988888888888766 578888887776655543 2111111111134555557899999887
Q ss_pred eeE
Q 006803 570 SSV 572 (630)
Q Consensus 570 daI 572 (630)
+.+
T Consensus 105 e~~ 107 (419)
T 4e4t_A 105 ENV 107 (419)
T ss_dssp TTC
T ss_pred CcC
Confidence 655
No 245
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=36.39 E-value=2.1e+02 Score=28.75 Aligned_cols=101 Identities=16% Similarity=0.244 Sum_probs=51.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc-c
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH-E 561 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-~ 561 (630)
...+++|.|.+..+..++..+.+.| -+|++.+ |.+.|... .+...|+.+..+.. ..+-..+. +
T Consensus 104 ~~~v~~~~g~~~al~~~~~~l~~~g--d~vl~~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 177 (416)
T 1bw0_A 104 KDNVVLCSGGSHGILMAITAICDAG--DYALVPQ--PGFPHYET--VCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK 177 (416)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHHH--HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT
T ss_pred cceEEEeCChHHHHHHHHHHhCCCC--CEEEEcC--CCcHhHHH--HHHHcCcEEEEeecCcccCCCCCHHHHHHHhccC
Confidence 4467788776666666665553333 3566554 45555443 34457887766641 12222332 2
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..+|++ ++---..|.++.+-=-..|+-+|+.|++.+++
T Consensus 178 ~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 215 (416)
T 1bw0_A 178 TKLLIV-TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFS 215 (416)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 223322 22111223333321134566778899998886
No 246
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=36.37 E-value=3.1e+02 Score=26.64 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCcEEEEc--ch---hHHHHhccccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEecc
Q 006803 543 KGLSCTYTH--IN---AVSYIMHEVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 543 ~GI~vTlI~--Ds---Av~~iM~~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~ae 603 (630)
.|+++++.. .. .+-.+..++|++++|+..- |.+-. -.|+..-.++ ++-.+||+|+=+
T Consensus 244 ~~~~~~~~~~~g~~~~~I~~~a~~adliV~G~~~~---~~~~~~l~Gsv~~~vl-~~~~~pVlvv~~ 306 (309)
T 3cis_A 244 PNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGR---GGYAGMLVGSVGETVA-QLARTPVIVARE 306 (309)
T ss_dssp TTSCEEEEEESSCHHHHHHHHHTTCSEEEEESSCS---SCCTTCSSCHHHHHHH-HHCSSCEEEECC
T ss_pred CCCcEEEEEEcCCHHHHHHHhhCCCCEEEECCCCC---CCccccccCcHHHHHH-hcCCCCEEEeCC
Confidence 488776533 22 2333334899999999752 22222 2465554444 667899999854
No 247
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=36.36 E-value=68 Score=30.69 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCceEEEEcCC
Q 006803 507 EMILLYAHELGKQFRVVVVDS 527 (630)
Q Consensus 507 ~~vL~~A~e~gk~f~ViV~ES 527 (630)
..+++...+.|-..+|+++++
T Consensus 18 ~~l~~~L~~~g~~V~vv~T~~ 38 (189)
T 2ejb_A 18 IKLLQVLEELDFSVDLVISRN 38 (189)
T ss_dssp HHHHHHHHHTTCEEEEEECHH
T ss_pred HHHHHHHHHCCCEEEEEEChh
Confidence 355556666677777777766
No 248
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=36.17 E-value=28 Score=31.48 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=46.8
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHh-CCC
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA-FRV 596 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~-~~V 596 (630)
+..+|+|+|..|.. ...+...|...|+.+....++.-+ +-...|.||+..+ +.+. + |. .+..+... ..+
T Consensus 11 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a-l~~~~dlvl~D~~--mp~~---~--g~-l~~~~~~~~~~~ 80 (196)
T 1qo0_D 11 RELQVLVLNPPGEV-SDALVLQLIRIGCSVRQCWPPPEA-FDVPVDVVFTSIF--QNRH---H--DE-IAALLAAGTPRT 80 (196)
T ss_dssp GGCEEEEESCTTHH-HHHHHHHHHHHTCEEEEECSCCSS-CSSCCSEEEEECC--SSTH---H--HH-HHHHHHHSCTTC
T ss_pred cCCeEEEEcCChhH-HHHHHHHHHHcCCeEEEecCchhh-CCCCCCEEEEeCC--CCcc---c--hH-HHHHHhccCCCC
Confidence 45678888877654 233446666778888766654421 1235788887543 3221 1 54 44444444 689
Q ss_pred cEEEeccccc
Q 006803 597 PVLICCEAYK 606 (630)
Q Consensus 597 PV~V~aet~K 606 (630)
||++++....
T Consensus 81 ~ii~lt~~~~ 90 (196)
T 1qo0_D 81 TLVALVEYES 90 (196)
T ss_dssp EEEEEECCCS
T ss_pred CEEEEEcCCC
Confidence 9999876543
No 249
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=35.97 E-value=2.6e+02 Score=27.09 Aligned_cols=98 Identities=7% Similarity=0.014 Sum_probs=52.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HH-HHhCCCcEEEEcc---hhHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RR-LLAKGLSCTYTHI---NAVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~e-L~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 568 (630)
+.|++.+.+..+..++..+.. ..-+|++. .|.+.+.... .. +...|+.+.++.. ..+-..+. ++..|++
T Consensus 15 ~~i~~~sG~~a~~~~~~~~~~--~g~~v~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~- 89 (331)
T 1pff_A 15 ACAATASGMGAIAASVWTFLK--AGDHLISD--DCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPNTRIVYF- 89 (331)
T ss_dssp EEEEESSHHHHHHHHHHHHCC--TTCEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCCTTEEEEEE-
T ss_pred eEEEeCChHHHHHHHHHHhcC--CCCEEEEc--CCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcCCCeEEEE-
Confidence 455544435444444443333 33456665 3666665333 22 4568999888853 23333333 3444444
Q ss_pred ceeEecCCceecccchHHHHHHHHh-CCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHA-FRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~-~~VPV~V 600 (630)
...--..|.+.. --.++-+|++ |+++++|
T Consensus 90 ~~~~nptG~~~~---~~~i~~~~~~~~~~~li~ 119 (331)
T 1pff_A 90 ETPANPTLKVID---IEDAVKQARKQKDILVIV 119 (331)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTTSSSCEEEE
T ss_pred ECCCCCcCcccC---HHHHHHHHhhhcCCEEEE
Confidence 222223455543 4567788899 9998887
No 250
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=35.88 E-value=1.7e+02 Score=25.56 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=55.3
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----hHHHH-hccccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----AVSYI-MHEVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----Av~~i-M~~Vd~VivGA 569 (630)
..|+..|+..+-..+...+.+.| +.|+++|..|...- +...++...|+.+.+ -|. .+... +.++|.||+..
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~~~~~~-~~~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRG--QNVTVISNLPEDDI-KQLEQRLGDNADVIP-GDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHHHH-HHHHHHHCTTCEEEE-SCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEECCChHHH-HHHHHhhcCCCeEEE-cCCCCHHHHHHcChhhCCEEEEec
Confidence 45777788777677777766655 56777776542111 112333456776543 232 12222 56788887765
Q ss_pred eeEecCCceecccchHHHHHHHHhC-C-CcEEEecccccc
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAF-R-VPVLICCEAYKF 607 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~-~-VPV~V~aet~Kf 607 (630)
+. + --...+++.|+.. + ..+++.+.....
T Consensus 80 ~~-----d----~~n~~~~~~a~~~~~~~~ii~~~~~~~~ 110 (153)
T 1id1_A 80 DN-----D----ADNAFVVLSAKDMSSDVKTVLAVSDSKN 110 (153)
T ss_dssp SC-----H----HHHHHHHHHHHHHTSSSCEEEECSSGGG
T ss_pred CC-----h----HHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence 32 1 2235677788775 4 456665554443
No 251
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=35.81 E-value=48 Score=33.42 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=59.5
Q ss_pred CCEEEeecChH------HHHHHHHHHHHcCCceEEEEcCCCCCchH----HHHHHHHHhCCCcE--------EE----Ec
Q 006803 494 GDVLLTYGSSC------VVEMILLYAHELGKQFRVVVVDSRPKHEG----QALLRRLLAKGLSC--------TY----TH 551 (630)
Q Consensus 494 gdvILT~g~S~------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG----~~La~eL~~~GI~v--------Tl----I~ 551 (630)
..+|+..|+-. .+...+....+.+..++++++-..|...+ ..+.....+.|+.- .+ +.
T Consensus 184 ~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~ 263 (413)
T 3oy2_A 184 DVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLT 263 (413)
T ss_dssp SEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCC
T ss_pred ceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCC
Confidence 45678777642 34455555555666777666644443322 33334455578772 22 33
Q ss_pred chhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 552 INAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 552 DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+..+..+|..+|.+++-.. .. |.-...+=|-.+|+||++.
T Consensus 264 ~~~~~~~~~~adv~v~pS~--~E--------~~~~~~lEAma~G~PvI~s 303 (413)
T 3oy2_A 264 DERVDMMYNACDVIVNCSS--GE--------GFGLCSAEGAVLGKPLIIS 303 (413)
T ss_dssp HHHHHHHHHHCSEEEECCS--CC--------SSCHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHhCCEEEeCCC--cC--------CCCcHHHHHHHcCCCEEEc
Confidence 4578889999999988442 11 2223456677899999984
No 252
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=35.63 E-value=86 Score=33.63 Aligned_cols=95 Identities=13% Similarity=-0.009 Sum_probs=56.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|..||..|...+...-++...+.|-.+. |++..... . ...|.+.| .++++...--...+..+|+||..
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~--vi~~~~~~---~-~~~l~~~~-~i~~~~~~~~~~~l~~~~lVi~a---- 79 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGARLT--VNALTFIP---Q-FTVWANEG-MLTLVEGPFDETLLDSCWLAIAA---- 79 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEE--EEESSCCH---H-HHHHHTTT-SCEEEESSCCGGGGTTCSEEEEC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEE--EEcCCCCH---H-HHHHHhcC-CEEEEECCCCccccCCccEEEEc----
Confidence 47789999999998888888888776544 44433222 1 23444322 24444332111223456666553
Q ss_pred ecCCce-ecccchHHHHHHHHhCCCcEEEeccc
Q 006803 573 LSNGTT-YSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 573 ~aNG~V-~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
-|+- + ...++..|+.++|||-|+.+.
T Consensus 80 --t~~~~~----n~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 80 --TDDDTV----NQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp --CSCHHH----HHHHHHHHHHTTCEEEETTCT
T ss_pred --CCCHHH----HHHHHHHHHHcCCEEEECCCc
Confidence 2222 2 347888999999998777554
No 253
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=35.61 E-value=1.2e+02 Score=31.36 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=51.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HH-HHHhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LR-RLLAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~-eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
+.|++-+-+..+..++. ..+.| -+|++.+ |.+.|... .. .+...|+.++++... .+-..+. ++.+|++
T Consensus 84 ~~i~~~sG~~ai~~~~~-l~~~g--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~- 157 (403)
T 3cog_A 84 YCLAFASGLAATVTITH-LLKAG--DQIICMD--DVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWI- 157 (403)
T ss_dssp EEEEESCHHHHHHHHHT-TSCTT--CEEEEES--SCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHH-HhCCC--CEEEEeC--CCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 44444333444444444 33333 3566655 66766433 22 345679999998632 2333333 3344443
Q ss_pred ceeEecCCceecccchHHHHHHHHhCC-CcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFR-VPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~-VPV~V 600 (630)
..---..|.+.. --.|+-+|+.|+ +.++|
T Consensus 158 ~~p~nptG~~~~---l~~i~~la~~~g~~~liv 187 (403)
T 3cog_A 158 ETPTNPTQKVID---IEGCAHIVHKHGDIILVV 187 (403)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTSSSCCEEEE
T ss_pred ECCCCCCCeeeC---HHHHHHHHHHcCCCEEEE
Confidence 222223344443 346777889999 87776
No 254
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=35.50 E-value=3.5e+02 Score=27.17 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=51.8
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-----------hhHHHHhc-cc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-----------NAVSYIMH-EV 562 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~-~V 562 (630)
.+++|.|.+..+..++..+...| -+|++.+ |.+.|... .+...|+.+..+.. ..+-..+. ++
T Consensus 88 ~v~~t~g~~~al~~~~~~~~~~g--d~Vl~~~--~~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~ 161 (411)
T 2o0r_A 88 EVLVTVGATEAIAAAVLGLVEPG--SEVLLIE--PFYDSYSP--VVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRT 161 (411)
T ss_dssp SEEEEEHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTE
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHHH--HHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCc
Confidence 68888877777666666553333 3566644 44545432 34456877666542 12223332 33
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..|++- ..--..|.++..-=--.|+-+|+.||+.+++
T Consensus 162 ~~v~l~-~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (411)
T 2o0r_A 162 RALIIN-SPHNPTGAVLSATELAAIAEIAVAANLVVIT 198 (411)
T ss_dssp EEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344332 1111223332211114677788999998876
No 255
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=35.48 E-value=1.4e+02 Score=29.79 Aligned_cols=100 Identities=11% Similarity=0.125 Sum_probs=53.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-------------------h
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-------------------A 554 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------------------A 554 (630)
..+++|.|-+..+..++..+.+.| -+|++. .|.+.+... .+...|+.+..+... .
T Consensus 86 ~~i~~~~g~~~a~~~~~~~~~~~g--d~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 159 (410)
T 3e2y_A 86 EEILVAVGAYGSLFNSIQGLVDPG--DEVIIM--VPFYDCYEP--MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRE 159 (410)
T ss_dssp TSEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESCCTTHHH--HHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHH
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhhHH--HHHHcCCEEEEEeccccccccccccccCCcCCHHH
Confidence 568888777777766666654334 355554 455544433 334467776665421 1
Q ss_pred HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 555 VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 555 v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+-..+. ++..|++- .---..|.++.+----.|+-+|+.||+.+++
T Consensus 160 l~~~~~~~~~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 205 (410)
T 3e2y_A 160 LESKFSSKTKAIILN-TPHNPLGKVYTRQELQVIADLCVKHDTLCIS 205 (410)
T ss_dssp HHTTCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhhcCCCceEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 222222 34445442 2212234444333344577788999998876
No 256
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=35.27 E-value=1e+02 Score=30.98 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=58.8
Q ss_pred CCEEEeecChHHHH-HHHHHHH-HcCCceEEEEcCCCCCch--------HHHHHHHHHhC-C----Cc---EEEE-cc--
Q 006803 494 GDVLLTYGSSCVVE-MILLYAH-ELGKQFRVVVVDSRPKHE--------GQALLRRLLAK-G----LS---CTYT-HI-- 552 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~-e~gk~f~ViV~ESRP~~e--------G~~La~eL~~~-G----I~---vTlI-~D-- 552 (630)
+.+||..|-++-+= .++..+. +.| .+|+++.-.+... -..+...|.+. + -. ++++ .|
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 79 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN--HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR 79 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC--CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC--CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence 35788888777654 4444455 555 5777775443321 22332323332 1 02 3333 34
Q ss_pred --hhHHHHhc--c-ccEEEEcceeEecCC--------ceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 553 --NAVSYIMH--E-VTRVFLGASSVLSNG--------TTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 553 --sAv~~iM~--~-Vd~VivGAdaI~aNG--------~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
..+..++. . +|.||--|-...... --+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS 144 (397)
T 1gy8_A 80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSS 144 (397)
T ss_dssp CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECC
Confidence 34555565 3 777776553221100 0135689999999999999876665544
No 257
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=35.22 E-value=2.8e+02 Score=28.19 Aligned_cols=112 Identities=12% Similarity=-0.050 Sum_probs=59.2
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEE-EcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc-----
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVV-VVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA----- 569 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA----- 569 (630)
.|..+|....-...+....+....++|+ |++..+.. ...++. +.||.+....|-.-..--.++|.|++..
T Consensus 25 rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~-~~~~a~---~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 100 (357)
T 3ec7_A 25 KAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGR-AQAALD---KYAIEAKDYNDYHDLINDKDVEVVIITASNEAH 100 (357)
T ss_dssp EEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTH-HHHHHH---HHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHH-HHHHHH---HhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 6788888765555555444244567755 66766543 222332 2366566665533222223688888753
Q ss_pred ------------eeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 570 ------------SSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 570 ------------daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
+.++.-=-..+--....+.-+|+..++.++.++-.+.|++.+
T Consensus 101 ~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~ 154 (357)
T 3ec7_A 101 ADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGY 154 (357)
T ss_dssp HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHH
T ss_pred HHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHH
Confidence 333332223333444455556666777764444555565544
No 258
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=35.01 E-value=86 Score=27.09 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=47.6
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEE-EEcch--hHHHHhc---cccEEEEcceeEecCCceecccchHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCT-YTHIN--AVSYIMH---EVTRVFLGASSVLSNGTTYSRVGTACVAMV 590 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vT-lI~Ds--Av~~iM~---~Vd~VivGAdaI~aNG~V~NKiGT~~lAla 590 (630)
+..++|+|+|..+.. ...|...|.+.|+.+. ...+. ++..+-. ..|+||+..+- .+ .-|--.+..+
T Consensus 34 ~~~~~Ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l--~~-----~~g~~~~~~l 105 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFT-VKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM--PK-----MDGITCLSNI 105 (157)
T ss_dssp TEECEEEEECSCHHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC--SS-----SCHHHHHHHH
T ss_pred CCceEEEEEeCCHHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC--CC-----ccHHHHHHHH
Confidence 456789998887653 3345577888898876 33332 2222221 56888886542 22 2233333333
Q ss_pred HH-hCCCcEEEeccccc
Q 006803 591 AH-AFRVPVLICCEAYK 606 (630)
Q Consensus 591 Ak-~~~VPV~V~aet~K 606 (630)
-+ ..++|+++++....
T Consensus 106 r~~~~~~~ii~ls~~~~ 122 (157)
T 3hzh_A 106 MEFDKNARVIMISALGK 122 (157)
T ss_dssp HHHCTTCCEEEEESCCC
T ss_pred HhhCCCCcEEEEeccCc
Confidence 33 45799999876543
No 259
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=34.81 E-value=1.9e+02 Score=27.82 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=36.6
Q ss_pred HHHHhCCCc---EEEEcchhHHHHhc-----cccEEEEcceeEecCCceec-ccchHHHHHHHHhCCCcEEEeccc
Q 006803 538 RRLLAKGLS---CTYTHINAVSYIMH-----EVTRVFLGASSVLSNGTTYS-RVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 538 ~eL~~~GI~---vTlI~DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~N-KiGT~~lAlaAk~~~VPV~V~aet 604 (630)
..+.+.|++ +.+...+..-.++. ++|++++|+..- |.+-. -.|+..-. +.++-.+||+|+=+.
T Consensus 206 ~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~---~~~~~~~~Gsv~~~-vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 206 TFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVAR---TGLSGALIGNTAEV-VLDTLESDVLVLKPD 277 (290)
T ss_dssp HHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSS---CCGGGCCSCHHHHH-HHTTCSSEEEEECCH
T ss_pred HHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCC---cCCcceecchHHHH-HHhcCCCCEEEECCC
Confidence 334455774 34444444444443 499999999752 22322 25654444 446678999998543
No 260
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=34.80 E-value=2.4e+02 Score=27.77 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=39.7
Q ss_pred HcCCceEEEEc-CCCCCchHHHHHHHHHhCCCcEEEE---cchhHHHHhccccEEEEcceeEecCCceecccchHHHHHH
Q 006803 515 ELGKQFRVVVV-DSRPKHEGQALLRRLLAKGLSCTYT---HINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMV 590 (630)
Q Consensus 515 e~gk~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI---~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAla 590 (630)
++...++++++ ...+ +-+....++....=.++++ ...-+..+|..+|.+|+.+ |+. .+=
T Consensus 226 ~~~~~~~lv~~~g~~~--~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S-------------~g~--~lE 288 (376)
T 1v4v_A 226 EAFPHLTFVYPVHLNP--VVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS-------------GGL--QEE 288 (376)
T ss_dssp HHCTTSEEEEECCSCH--HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-------------HHH--HHH
T ss_pred hhCCCeEEEEECCCCH--HHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC-------------cCH--HHH
Confidence 33445776664 3222 1123333443321256665 3335778889999887542 433 446
Q ss_pred HHhCCCcEEEe
Q 006803 591 AHAFRVPVLIC 601 (630)
Q Consensus 591 Ak~~~VPV~V~ 601 (630)
|-.+|+|++++
T Consensus 289 A~a~G~PvI~~ 299 (376)
T 1v4v_A 289 GAALGVPVVVL 299 (376)
T ss_dssp HHHTTCCEEEC
T ss_pred HHHcCCCEEec
Confidence 77789999985
No 261
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=34.77 E-value=3.6e+02 Score=27.01 Aligned_cols=54 Identities=17% Similarity=-0.005 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEc---ceeEecCCceecccchHHH
Q 006803 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLG---ASSVLSNGTTYSRVGTACV 587 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG---AdaI~aNG~V~NKiGT~~l 587 (630)
+=..+++.+.+.|+++..|+++.-+.+-+.+|.+|.- .+.+ .|....+.||.++
T Consensus 155 ~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~--~~st~~~s~ta~~ 211 (306)
T 1nri_A 155 YVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEIL--TGSSRLKSGTAQK 211 (306)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSS--TTCTTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccc--cCcccchhHHHHH
Confidence 3445568888899999999998888887889988853 2322 3334456666544
No 262
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=34.74 E-value=1.3e+02 Score=29.50 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=60.4
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEE-cc----hhHHHHhc--ccc
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYT-HI----NAVSYIMH--EVT 563 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI-~D----sAv~~iM~--~Vd 563 (630)
.+.+||..|-++-+= .+.+.+.++| .+|+++.-++... ..+...+.. .+-.++++ .| ..+..++. .+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG--YDVVIADNLVNSK-REAIARIEKITGKTPAFHETDVSDERALARIFDAHPIT 80 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECCCSSSC-THHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC--CcEEEEecCCcch-HHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCc
Confidence 456888888887664 4444455555 5777776544322 223333322 13333433 22 44556666 577
Q ss_pred EEEEcceeEecCC--------ceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 564 RVFLGASSVLSNG--------TTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 564 ~VivGAdaI~aNG--------~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.||--|-....+. .-.|-.||..+.-+|+..++.-+|...+
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 129 (341)
T 3enk_A 81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS 129 (341)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 7765442211000 0136779999999999999876665544
No 263
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=34.68 E-value=81 Score=26.97 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=46.8
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH-HHhc--cccEEEEcceeEecCCceecccchHHHHHHHH-h
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS-YIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH-A 593 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk-~ 593 (630)
...+|+|+|..+.. ...|...|...|+.|....+..-+ ..+. ..|+||+..+- .+ .-|.-.+..+-+ .
T Consensus 13 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--~~-----~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 13 RRPEILLVDSQEVI-LQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQ-----MDGPTLLARIHQQY 84 (153)
T ss_dssp SCCEEEEECSCHHH-HHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SS-----SCHHHHHHHHHHHC
T ss_pred CCceEEEECCCHHH-HHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC--Cc-----CcHHHHHHHHHhHC
Confidence 45678888776643 333456777778877766553222 1222 57888886542 22 223333433333 3
Q ss_pred CCCcEEEeccccc
Q 006803 594 FRVPVLICCEAYK 606 (630)
Q Consensus 594 ~~VPV~V~aet~K 606 (630)
.++||++++....
T Consensus 85 ~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 85 PSTTRILLTGDPD 97 (153)
T ss_dssp TTSEEEEECCCCC
T ss_pred CCCeEEEEECCCC
Confidence 5799999876543
No 264
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=34.52 E-value=3.4e+02 Score=28.45 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=42.8
Q ss_pred eEEEEcCCCCCchHHHHH-H-HHHhCCCcEEEEcch---hHHHHhccccEEEEcceeE-ecCCceecccchHHHHHHHHh
Q 006803 520 FRVVVVDSRPKHEGQALL-R-RLLAKGLSCTYTHIN---AVSYIMHEVTRVFLGASSV-LSNGTTYSRVGTACVAMVAHA 593 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La-~-eL~~~GI~vTlI~Ds---Av~~iM~~Vd~VivGAdaI-~aNG~V~NKiGT~~lAlaAk~ 593 (630)
-+|++. .|.+.|.... . .+...|+.++++... .+-..+..-+++|+ .+.+ -..|.+.. --.|+-+|+.
T Consensus 122 d~Vi~~--~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~-~e~p~NptG~~~d---l~~i~~la~~ 195 (430)
T 3ri6_A 122 DSVVTT--DRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLF-LETISNPQLQVAD---LEALSKVVHA 195 (430)
T ss_dssp CEEEEE--TTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEE-EESSCTTTCCCCC---HHHHHHHHHT
T ss_pred CEEEEc--CCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEE-EECCCCCCCeecC---HHHHHHHHHH
Confidence 356554 3555554433 2 677889999998633 33344443233333 2222 22344432 2367888999
Q ss_pred CCCcEEE
Q 006803 594 FRVPVLI 600 (630)
Q Consensus 594 ~~VPV~V 600 (630)
|+++++|
T Consensus 196 ~g~~liv 202 (430)
T 3ri6_A 196 KGIPLVV 202 (430)
T ss_dssp TTCCEEE
T ss_pred cCCEEEE
Confidence 9999987
No 265
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=34.52 E-value=1.3e+02 Score=27.73 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=44.6
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCC-cEEEEcch--hHHHHhc--------------cccEEEEcceeEecCCceec
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGL-SCTYTHIN--AVSYIMH--------------EVTRVFLGASSVLSNGTTYS 580 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~Ds--Av~~iM~--------------~Vd~VivGAdaI~aNG~V~N 580 (630)
...+|+|+|..|... ..|...|...|+ .|....+. ++.++-. ..|+||+-.+ +.+
T Consensus 60 ~~~~ILiVdDd~~~~-~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~----- 131 (206)
T 3mm4_A 60 RGKRVLVVDDNFISR-KVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPE----- 131 (206)
T ss_dssp TTCEEEEECSCHHHH-HHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSS-----
T ss_pred CCCEEEEEeCCHHHH-HHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCC-----
Confidence 345777777665432 234466777777 55555443 2233322 4788887543 332
Q ss_pred ccchHHHHHHHHh-----CCCcEEEecccc
Q 006803 581 RVGTACVAMVAHA-----FRVPVLICCEAY 605 (630)
Q Consensus 581 KiGT~~lAlaAk~-----~~VPV~V~aet~ 605 (630)
.-|.-.+..+-+. .++||++++...
T Consensus 132 ~~G~el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 132 MDGYEATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp SCHHHHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCHHHHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 2244444444443 679999987653
No 266
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=34.45 E-value=3.1e+02 Score=27.36 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=51.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHH-HHhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRR-LLAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~e-L~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
+.|++-+.+..+..++..+.. ..-+|++.+ |.+.|... ... +...|+.+.++... .+-..+. ++..|++-
T Consensus 69 ~~i~~~sGt~a~~~~~~~~~~--~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 144 (386)
T 1cs1_A 69 GAVLTNTGMSAIHLVTTVFLK--PGDLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHCC--TTCEEEEET--TCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhC--CCCEEEEec--CCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEe
Confidence 445442224444444444322 334566655 66666333 223 35679998888632 2333333 46666653
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..--..|.+.. --.|+-+|+.|++.++|
T Consensus 145 -~~~nptG~~~~---l~~i~~l~~~~~~~li~ 172 (386)
T 1cs1_A 145 -SPSNPLLRVVD---IAKICHLAREVGAVSVV 172 (386)
T ss_dssp -CSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred -CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 21122244442 35677889999998776
No 267
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=34.28 E-value=93 Score=30.42 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=45.4
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEEEc-CCCCCchHHHHHHHHHhCCCcEEEEc----------chhHHHHhc--ccc
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVVVV-DSRPKHEGQALLRRLLAKGLSCTYTH----------INAVSYIMH--EVT 563 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~Vd 563 (630)
||.-|+.+....+|... +.|..++|..+ -.+|...|.+.| .++|||+.++. |..+-..+. ++|
T Consensus 10 vl~SG~Gsnl~all~~~-~~~~~~eI~~Vis~~~~a~~~~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~D 85 (215)
T 3tqr_A 10 VLISGNGTNLQAIIGAI-QKGLAIEIRAVISNRADAYGLKRA---QQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPK 85 (215)
T ss_dssp EEESSCCHHHHHHHHHH-HTTCSEEEEEEEESCTTCHHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCcHHHHHHHHHH-HcCCCCEEEEEEeCCcchHHHHHH---HHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCC
Confidence 45557766666666654 44444565433 347777776554 35799998874 344555555 589
Q ss_pred EEEEcc-eeEec
Q 006803 564 RVFLGA-SSVLS 574 (630)
Q Consensus 564 ~VivGA-daI~a 574 (630)
.+++-+ -.|+.
T Consensus 86 liv~agy~~il~ 97 (215)
T 3tqr_A 86 LIVLAGFMRKLG 97 (215)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEEccchhhCC
Confidence 998854 34543
No 268
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=34.20 E-value=92 Score=30.79 Aligned_cols=97 Identities=8% Similarity=0.090 Sum_probs=50.9
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhcc
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMHE 561 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~ 561 (630)
++...++|+|-+-+..+..+|..+ ..+..-+|++.+ |.+.+... .+...|+.+.++... .+-..+.+
T Consensus 50 ~~~~~~~~~~~~gt~a~~~~~~~~-~~~~gd~v~~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~ 124 (374)
T 3uwc_A 50 LHNAPHAIGVGTGTDALAMSFKML-NIGAGDEVITCA--NTFIASVG--AIVQAGATPVLVDSENGYVIDPEKIEAAITD 124 (374)
T ss_dssp HTTCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEES--SSCHHHHH--HHHHTTCEEEEECBCTTSSBCGGGTGGGCCT
T ss_pred HhCCCcEEEeCCHHHHHHHHHHHc-CCCCCCEEEECC--CccHHHHH--HHHHcCCEEEEEecCCCCCcCHHHHHHhCCC
Confidence 333335666655555544444443 112233565543 45555443 355678888887632 11122222
Q ss_pred ccEEEEcceeEecCCceecccch----HHHHHHHHhCCCcEEEe
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGT----ACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT----~~lAlaAk~~~VPV~V~ 601 (630)
=.++|+ +.|..|+ -.|+-+|+.|++.+++=
T Consensus 125 ~~~~v~----------~~n~~G~~~~~~~i~~~~~~~~~~li~D 158 (374)
T 3uwc_A 125 KTKAIM----------PVHYTGNIADMPALAKIAKKHNLHIVED 158 (374)
T ss_dssp TEEEEC----------CBCGGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CceEEE----------EeCCcCCcCCHHHHHHHHHHcCCEEEEe
Confidence 123333 3344554 45778899999988873
No 269
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=34.14 E-value=2.3e+02 Score=28.26 Aligned_cols=16 Identities=0% Similarity=0.106 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCCcEEE
Q 006803 585 ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 585 ~~lAlaAk~~~VPV~V 600 (630)
-.|+-+|++|++++++
T Consensus 207 ~~l~~l~~~~~~~li~ 222 (397)
T 2ord_A 207 EEARKLCDEYDALLVF 222 (397)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4677788999998776
No 270
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=34.11 E-value=2.2e+02 Score=31.37 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=31.5
Q ss_pred cccEEEEcceeEecCCceecccc--h---HHHHHHHHhCCCcEEEec
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVG--T---ACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiG--T---~~lAlaAk~~~VPV~V~a 602 (630)
.+|..||-|...-.+|.+.-... . ..+|++|+..+--|||-+
T Consensus 180 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~~a~aAk~~gg~VIveV 226 (531)
T 2ahu_A 180 APDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQV 226 (531)
T ss_dssp CCSEEEEECSEEETTCCEECTTSSCCTTHHHHHHHHHTTTCEEEEEE
T ss_pred CCeEEEEEcccCCCCceEEEcCcccccCHHHHHHhHhhcCCEEEEEE
Confidence 58999999999999999876532 2 367999996655555543
No 271
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=34.04 E-value=1.1e+02 Score=25.34 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc-----cccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH-----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
..++|+|+|..|.. ...|...|.+.|..+.....+....+-. ..|.||+ |.-+.+++ |.-.+..+-+
T Consensus 4 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~--D~~~p~~~-----g~~~~~~lr~ 75 (129)
T 3h1g_A 4 GSMKLLVVDDSSTM-RRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLIT--DWNMPEMN-----GLDLVKKVRS 75 (129)
T ss_dssp --CCEEEECSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEE--CSCCSSSC-----HHHHHHHHHT
T ss_pred CCcEEEEEeCCHHH-HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEE--eCCCCCCC-----HHHHHHHHHh
Q ss_pred hC---CCcEEEeccc
Q 006803 593 AF---RVPVLICCEA 604 (630)
Q Consensus 593 ~~---~VPV~V~aet 604 (630)
.. ++|+++++..
T Consensus 76 ~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 76 DSRFKEIPIIMITAE 90 (129)
T ss_dssp STTCTTCCEEEEESC
T ss_pred cCCCCCCeEEEEeCC
No 272
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=33.79 E-value=1.1e+02 Score=27.25 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=47.1
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHHH-hC
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH-AF 594 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk-~~ 594 (630)
..+|+|+|..|.. ...|...|...|+.|....+..-+. .+. ..|.||+-. -+.++ -|.-.+..+-+ ..
T Consensus 7 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~-----~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 7 DKNFLVIDDNEVF-AGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXL--HLGND-----SGLSLIAPLCDLQP 78 (184)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECS--EETTE-----ESHHHHHHHHHHCT
T ss_pred CCeEEEEcCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEec--cCCCc-----cHHHHHHHHHhcCC
Confidence 4678888887654 2334567777888886665543322 222 478888854 33332 34444444333 45
Q ss_pred CCcEEEeccccc
Q 006803 595 RVPVLICCEAYK 606 (630)
Q Consensus 595 ~VPV~V~aet~K 606 (630)
++||++++....
T Consensus 79 ~~~ii~lt~~~~ 90 (184)
T 3rqi_A 79 DARILVLTGYAS 90 (184)
T ss_dssp TCEEEEEESSCC
T ss_pred CCCEEEEeCCCC
Confidence 799999876543
No 273
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=33.64 E-value=76 Score=32.03 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=35.9
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY 549 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 549 (630)
.+..|++||.+|.+++=...+..|+..|- +||+++..+... .+ +.+.|.+..+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~~--~~---~~~lGa~~v~ 225 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA--EVSVFARNEHKK--QD---ALSMGVKHFY 225 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC--EEEEECSSSTTH--HH---HHHTTCSEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HH---HHhcCCCeec
Confidence 56789999999975544555566666664 799998777542 23 3456777665
No 274
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=33.55 E-value=87 Score=30.45 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=50.7
Q ss_pred CEEEeecChHHHHHHH-HHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc--cccEEEEccee
Q 006803 495 DVLLTYGSSCVVEMIL-LYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH--EVTRVFLGASS 571 (630)
Q Consensus 495 dvILT~g~S~tV~~vL-~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAda 571 (630)
.+||..|-++.+=.-| ..+.++| .+|+++..++.. + +.....+..++. .+|.||--|-.
T Consensus 4 ~~ilVtGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~--------------D--~~d~~~~~~~~~~~~~d~vih~a~~ 65 (321)
T 1e6u_A 4 QRVFIAGHRGMVGSAIRRQLEQRG--DVELVLRTRDEL--------------N--LLDSRAVHDFFASERIDQVYLAAAK 65 (321)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCT--TEEEECCCTTTC--------------C--TTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC--CeEEEEecCccC--------------C--ccCHHHHHHHHHhcCCCEEEEcCee
Confidence 4677777777654333 3333333 466666544210 1 011134445555 67777765432
Q ss_pred Eec------CC---ceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 572 VLS------NG---TTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 572 I~a------NG---~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
... +- .-+|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~ 108 (321)
T 1e6u_A 66 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 108 (321)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred cCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccH
Confidence 110 00 01367899999999999998666655543
No 275
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=33.31 E-value=96 Score=30.16 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=61.3
Q ss_pred CCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc------
Q 006803 493 DGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------ 560 (630)
Q Consensus 493 dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 560 (630)
.|.+||..|-|+-+ ..+.+...++| .+|+++..++......+..+|.+.|..+.++ +| ..+..++.
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRG--CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46677777777655 44455555555 5788876655333345567788778777665 34 22333322
Q ss_pred -cccEEEEcceeEecCCc-------------eecccchHHHHHHHHhC--CCcEEEe
Q 006803 561 -EVTRVFLGASSVLSNGT-------------TYSRVGTACVAMVAHAF--RVPVLIC 601 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~-------------V~NKiGT~~lAlaAk~~--~VPV~V~ 601 (630)
++|.||--|-. ...+. -+|-.|++.+.-++..+ +...+|.
T Consensus 106 g~iD~lv~~Ag~-~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 161 (283)
T 1g0o_A 106 GKLDIVCSNSGV-VSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLIL 161 (283)
T ss_dssp SCCCEEEECCCC-CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEECCCc-CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 57887776532 22332 14667888887666654 3344443
No 276
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=33.13 E-value=88 Score=36.30 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhccC---CCEEEeecChHHHH--HHHHHHHHcC---------CceEEEEcCCCCCchHHHHHHHH--HhC
Q 006803 480 DKVIVRHAATKVRD---GDVLLTYGSSCVVE--MILLYAHELG---------KQFRVVVVDSRPKHEGQALLRRL--LAK 543 (630)
Q Consensus 480 ~~~Ia~~a~~~I~d---gdvILT~g~S~tV~--~vL~~A~e~g---------k~f~ViV~ESRP~~eG~~La~eL--~~~ 543 (630)
.++|.++..+++.+ +.+||..|...-++ ..|..+...| ...+||.+|..|.-.- .++.. ...
T Consensus 393 ~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~--~l~~~~~Ng~ 470 (745)
T 3ua3_A 393 GEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIV--TLKYMNVRTW 470 (745)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHH--HHHHHHHHTT
T ss_pred HHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHH--HHHHHHhcCC
Confidence 34555555556543 35899998777444 4555554445 6789999999885432 22222 233
Q ss_pred CCcEEEEcchhHHHHh-------ccccEEE
Q 006803 544 GLSCTYTHINAVSYIM-------HEVTRVF 566 (630)
Q Consensus 544 GI~vTlI~DsAv~~iM-------~~Vd~Vi 566 (630)
+=.+|+|.-.+=-+-+ .+||.+|
T Consensus 471 ~d~VtVI~gd~eev~lp~~~~~~ekVDIIV 500 (745)
T 3ua3_A 471 KRRVTIIESDMRSLPGIAKDRGFEQPDIIV 500 (745)
T ss_dssp TTCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred CCeEEEEeCchhhcccccccCCCCcccEEE
Confidence 3348888754444433 4788876
No 277
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=33.04 E-value=72 Score=29.09 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCC-ceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcch
Q 006803 505 VVEMILLYAHELGK-QFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHIN 553 (630)
Q Consensus 505 tV~~vL~~A~e~gk-~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds 553 (630)
+++.+...|.+.|. .++|+|--- ..|++.+ +.|...|+.++.|.|.
T Consensus 64 aa~~~~~~~~~~Gi~~v~V~vkG~---G~Gre~airaL~~~Gl~I~~I~Dv 111 (129)
T 2vqe_K 64 AALDAAKKAMAYGMQSVDVIVRGT---GAGREQAIRALQASGLQVKSIVDD 111 (129)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEESC---CTTHHHHHHHHHTSSSEEEECEEC
T ss_pred HHHHHHHHHHHhCCeEEEEEEECC---CCCHHHHHHHHHHCCCEEEEEEEc
Confidence 45777888888774 467777543 3467776 8999999999999983
No 278
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=32.99 E-value=1.3e+02 Score=29.49 Aligned_cols=53 Identities=30% Similarity=0.421 Sum_probs=34.8
Q ss_pred ccCCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE
Q 006803 491 VRDGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 491 I~dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 550 (630)
+..|++||.+|.++.+ ..++..|+..| .+|++++..+.. ..++ .+.|....+-
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~--~~~~---~~~ga~~~~~ 176 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEK--LALP---LALGAEEAAT 176 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGG--SHHH---HHTTCSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHH--HHHH---HhcCCCEEEE
Confidence 7889999999986654 45555566666 489998876543 2233 3457765543
No 279
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=32.85 E-value=4.4e+02 Score=28.02 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=58.0
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCC-CcEEEEc--chh-HHHHhc--cccEEE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKG-LSCTYTH--INA-VSYIMH--EVTRVF 566 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTlI~--DsA-v~~iM~--~Vd~Vi 566 (630)
.|..|+.++....+..+.+-+.+.|-....+++.+.....-..+.+.|.+.| ..+.++. |.. +-.++. ++|++|
T Consensus 311 ~gkrv~i~~~~~~~~~l~~~L~elG~~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~l~~~i~~~~pDl~i 390 (458)
T 1mio_B 311 QGKKVALLGDPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVDLLI 390 (458)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCSEEE
T ss_pred CCCEEEEEcCchHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhcCCCEEE
Confidence 5788999988887777777666778766655666543333344445566666 5544444 322 334444 577776
Q ss_pred EcceeEecCCceecccchHHHHHHHHhCCCcEEEec
Q 006803 567 LGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 567 vGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~a 602 (630)
-|.. -.-+|+..+||++.+.
T Consensus 391 g~~~----------------~~~~a~k~gip~~~~~ 410 (458)
T 1mio_B 391 SNTY----------------GKFIAREENIPFVRFG 410 (458)
T ss_dssp ESGG----------------GHHHHHHHTCCEEECS
T ss_pred eCcc----------------hHHHHHHcCCCEEEee
Confidence 4421 2345778899999773
No 280
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=32.83 E-value=1.3e+02 Score=24.34 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=45.1
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHHHh---
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA--- 593 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~--- 593 (630)
.+|+|+|..|.. ...+...|...|+.+....+..-+. .+. ..|.||+.. -+.++ -|.-.+..+-+.
T Consensus 3 ~~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~--~l~~~-----~g~~~~~~l~~~~~~ 74 (127)
T 2jba_A 3 RRILVVEDEAPI-REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAW--MLPGG-----SGIQFIKHLRRESMT 74 (127)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEES--EETTE-----EHHHHHHHHHTSTTT
T ss_pred cEEEEEcCCHHH-HHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEec--CCCCC-----CHHHHHHHHHhCccc
Confidence 467888877643 3344567777888877655433222 222 478888754 33322 244444444433
Q ss_pred CCCcEEEecccc
Q 006803 594 FRVPVLICCEAY 605 (630)
Q Consensus 594 ~~VPV~V~aet~ 605 (630)
.++|+++++...
T Consensus 75 ~~~~ii~~s~~~ 86 (127)
T 2jba_A 75 RDIPVVMLTARG 86 (127)
T ss_dssp TTSCEEEEEETT
T ss_pred CCCCEEEEeCCC
Confidence 479999987654
No 281
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=32.82 E-value=3.6e+02 Score=27.72 Aligned_cols=97 Identities=11% Similarity=-0.090 Sum_probs=54.6
Q ss_pred EEEeecChHHHHHHHHHHHH--------cC---CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hH
Q 006803 496 VLLTYGSSCVVEMILLYAHE--------LG---KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AV 555 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e--------~g---k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av 555 (630)
.++|-|-|..+...|..+.. .| .+-+|++.+ .+ ..+.+.+...|+.+.+|... .+
T Consensus 106 ~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~---~h--~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l 180 (452)
T 2dgk_A 106 GTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP---VQ--ICWHKFARYWDVELREIPMRPGQLFMDPKRM 180 (452)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS---CC--HHHHHHHHHTTCEEEECCCBTTBCSCCHHHH
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC---Cc--HHHHHHHHHcCceEEEEecCCCCCeECHHHH
Confidence 67777777665555544432 44 234777765 22 22234445579888887532 23
Q ss_pred HHHhccccEEEEcceeEecCCceecccchHHHHHHHHh------CCCcEEE
Q 006803 556 SYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA------FRVPVLI 600 (630)
Q Consensus 556 ~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~------~~VPV~V 600 (630)
-..+.+-+++|+....-...|.+.. --.|+-+|+. +++.|+|
T Consensus 181 ~~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~v 228 (452)
T 2dgk_A 181 IEACDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHI 228 (452)
T ss_dssp HHHCCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEE
Confidence 3333333466666555555665532 2356667777 4999887
No 282
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=32.81 E-value=1.3e+02 Score=33.01 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=56.8
Q ss_pred HHHHhhccCCCEEEeecChH-----HHHHHHH-HH---HHcCCc--eEEEEcC-CCCCchHHH----------------H
Q 006803 485 RHAATKVRDGDVLLTYGSSC-----VVEMILL-YA---HELGKQ--FRVVVVD-SRPKHEGQA----------------L 536 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~-----tV~~vL~-~A---~e~gk~--f~ViV~E-SRP~~eG~~----------------L 536 (630)
+.|+.+|++|++|...|+.+ .+...|. ++ +..|.. +.++... ..|..++.. .
T Consensus 18 eEAv~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~ 97 (514)
T 4eu9_A 18 ETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTDAT 97 (514)
T ss_dssp HHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCHH
T ss_pred HHHHHhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEecCCCHH
Confidence 45678999999999987543 3333332 22 223433 4444433 244444321 1
Q ss_pred HHHHHhCC-CcEEEEcchhHHHHhc-----cccEEEEcceeEecCCcee
Q 006803 537 LRRLLAKG-LSCTYTHINAVSYIMH-----EVTRVFLGASSVLSNGTTY 579 (630)
Q Consensus 537 a~eL~~~G-I~vTlI~DsAv~~iM~-----~Vd~VivGAdaI~aNG~V~ 579 (630)
.+++.+.| +...-+..+.++..+. .+|..||-+..+-.+|.+.
T Consensus 98 ~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis 146 (514)
T 4eu9_A 98 MRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIV 146 (514)
T ss_dssp HHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEE
T ss_pred HHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEE
Confidence 35566666 3333334456654432 6899999999999999885
No 283
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=32.81 E-value=1.4e+02 Score=30.89 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=52.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------------------
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-------------------- 553 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------------------- 553 (630)
..+++|.|-+..+..++..+.+.| -+|++.+ |.+.|.... +...|..+..+...
T Consensus 119 ~~v~~t~G~~~al~~~~~~l~~~g--d~Vlv~~--p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 192 (447)
T 3b46_A 119 ENVTVTTGANEGILSCLMGLLNAG--DEVIVFE--PFFDQYIPN--IELCGGKVVYVPINPPKELDQRNTRGEEWTIDFE 192 (447)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHHH--HHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHH
T ss_pred hhEEEeCCHHHHHHHHHHHHcCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEEeCCCccccccccccccCcccCHH
Confidence 367788777777666666554333 3566665 666665433 34467766655411
Q ss_pred hHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 554 AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 554 Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+-..+. ++..|++- .---..|.++.+-=--.|+-+|+.|++.+++
T Consensus 193 ~l~~~l~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~l~~~~~~~li~ 239 (447)
T 3b46_A 193 QFEKAITSKTKAVIIN-TPHNPIGKVFTREELTTLGNICVKHNVVIIS 239 (447)
T ss_dssp HHHTTCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhccCCeEEEEe-CCCCCCCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 1111221 33334331 1111224443322223567788899998776
No 284
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=32.68 E-value=1.6e+02 Score=29.88 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=52.7
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHHh-cccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYIM-HEVT 563 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM-~~Vd 563 (630)
..+++|-|.+..+..++..+.+.| -+|++. .|.+.|...+ +...|+.+..+... .+-..+ .++.
T Consensus 110 ~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 183 (404)
T 2o1b_A 110 DEVCILYGTKNGLVAVPTCVINPG--DYVLLP--DPGYTDYLAG--VLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTK 183 (404)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCSSHHHH--HHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEE
T ss_pred ccEEEcCCcHHHHHHHHHHhcCCC--CEEEEc--CCCchhHHHH--HHHCCCEEEEeccCcccCcCCHHHHHHhhccCce
Confidence 467888777766666666543333 356554 3556555443 33468777766421 111111 2455
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|++- .--...|.++..-=--.|+-+|+.|++.+++
T Consensus 184 ~v~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 219 (404)
T 2o1b_A 184 LIYLT-YPNNPTGSTATKEVFDEAIAKFKGTDTKIVH 219 (404)
T ss_dssp EEEEC-SSCTTTCCCCCHHHHHHHHHHHTTSSCEEEE
T ss_pred EEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 55552 2111224433221123477788999998776
No 285
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=32.59 E-value=92 Score=31.69 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=60.8
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
.|+.|..+|+-..+..++ .+.+.++|+|-.|. .|. .+|.+..++++++|.||+-+.++
T Consensus 140 ~g~kV~vIG~fP~i~~~~------~~~~~l~V~E~~p~------------~g~----~p~~~~~~~lp~~D~viiTgstl 197 (270)
T 3l5o_A 140 KGKKVGVVGHFPHLESLL------EPICDLSILEWSPE------------EGD----YPLPASEFILPECDYVYITCASV 197 (270)
T ss_dssp TTSEEEEESCCTTHHHHH------TTTSEEEEEESSCC------------TTC----EEGGGHHHHGGGCSEEEEETHHH
T ss_pred CCCEEEEECCchhHHHHH------hcCCCEEEEECCCC------------CCC----CChhHHHHhhccCCEEEEEeehh
Confidence 578999999876544433 23567899998884 232 58899999999999999976655
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEEeccccccccc
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHER 610 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r 610 (630)
. | ||+.--|.-......|+++.||.-+.+.
T Consensus 198 v------N--~Tl~~lL~~~~~a~~vvl~GPStp~~P~ 227 (270)
T 3l5o_A 198 V------D--KTLPRLLELSRNARRITLVGPGTPLAPV 227 (270)
T ss_dssp H------H--TCHHHHHHHTTTSSEEEEESTTCCCCGG
T ss_pred h------c--CCHHHHHhhCCCCCEEEEECCCchhhHH
Confidence 5 4 2333222222345678889999888775
No 286
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=32.42 E-value=1.9e+02 Score=28.92 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=49.9
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh-------HHHH---hc-cc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA-------VSYI---MH-EV 562 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-------v~~i---M~-~V 562 (630)
.++++|.|.+..+..++....+.| -+|+|.+ |.+.+.. ..+...|+.+..+.... ...+ +. ++
T Consensus 92 ~~i~~t~g~~~al~~~~~~l~~~g--d~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 165 (385)
T 1b5p_A 92 EETIVTVGGSQALFNLFQAILDPG--DEVIVLS--PYWVSYP--EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRT 165 (385)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTE
T ss_pred HHEEEcCChHHHHHHHHHHhcCCC--CEEEEcC--CCchhHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCC
Confidence 467777776666665655543333 3555553 4454433 33345688777765321 1122 22 22
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+|++ ++---..|.++.+-=-..|+-+|+.|++.|++
T Consensus 166 ~~v~~-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 202 (385)
T 1b5p_A 166 KALVV-NSPNNPTGAVYPKEVLEALARLAVEHDFYLVS 202 (385)
T ss_dssp EEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEE-eCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 23322 12111223333322234577788899987776
No 287
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=32.37 E-value=1.6e+02 Score=28.77 Aligned_cols=106 Identities=18% Similarity=0.194 Sum_probs=59.6
Q ss_pred EEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCC-CcEEEEcc----hhHHHHhcc--ccEEEE
Q 006803 496 VLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKG-LSCTYTHI----NAVSYIMHE--VTRVFL 567 (630)
Q Consensus 496 vILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTlI~D----sAv~~iM~~--Vd~Viv 567 (630)
+||..|-++.+= .+++.+.+.| .+|++++-............|...+ +.+. ..| .++..++.. +|.||-
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~vih 79 (347)
T 1orr_A 3 KLLITGGCGFLGSNLASFALSQG--IDLIVFDNLSRKGATDNLHWLSSLGNFEFV-HGDIRNKNDVTRLITKYMPDSCFH 79 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCCSTTHHHHHHHHHTTCCCEEE-ECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEeCCCchhHHHHHHHHHhCC--CEEEEEeCCCccCchhhhhhhccCCceEEE-EcCCCCHHHHHHHHhccCCCEEEE
Confidence 578888777654 4444455555 5777775322111223345555544 4332 233 345666776 888887
Q ss_pred cceeEec-----CC---ceecccchHHHHHHHHhCCCc-EEEeccc
Q 006803 568 GASSVLS-----NG---TTYSRVGTACVAMVAHAFRVP-VLICCEA 604 (630)
Q Consensus 568 GAdaI~a-----NG---~V~NKiGT~~lAlaAk~~~VP-V~V~aet 604 (630)
-|-.... +- --+|-.||..+.-+|+.+++. -+|.+.+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS 125 (347)
T 1orr_A 80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST 125 (347)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence 6532211 00 124778999999999988885 4444333
No 288
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=32.37 E-value=1.4e+02 Score=31.14 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=52.2
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-------hhHHHHhc-----
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-------NAVSYIMH----- 560 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~----- 560 (630)
..++++|.|.+..+..++....+.| -+|++.+ |.+.|...+ +...|+.+..+.. ..+-..+.
T Consensus 140 ~~~v~~t~G~~~al~~~~~~l~~~G--d~Vlv~~--p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~ 213 (448)
T 3aow_A 140 DNDIMITSGSQQALDLIGRVFLNPG--DIVVVEA--PTYLAALQA--FNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQ 213 (448)
T ss_dssp TSEEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHHH--HHTTCCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred hhhEEEeCcHHHHHHHHHHHHcCCC--CEEEEeC--CChHHHHHH--HHHcCCEEEEeccCCCCCCHHHHHHHHhhhhcc
Confidence 3457777776666666655543333 3555543 667665444 3446877766642 23333343
Q ss_pred --cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 --EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 --~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++.+|++=..--...|.++..-=--.|+-+|+.|++.+++
T Consensus 214 ~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~ 255 (448)
T 3aow_A 214 GKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVE 255 (448)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2333322111111123333221123577788899998776
No 289
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=32.15 E-value=2.8e+02 Score=24.89 Aligned_cols=41 Identities=7% Similarity=-0.012 Sum_probs=31.6
Q ss_pred CCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEE
Q 006803 527 SRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL 567 (630)
Q Consensus 527 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 567 (630)
|+-..+=.++++.+.+.|+++..||++.-+.+-+.+|.+|.
T Consensus 120 sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~ 160 (188)
T 1tk9_A 120 SGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLV 160 (188)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEE
Confidence 33334445667888899999999999888888788998874
No 290
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=32.10 E-value=90 Score=24.52 Aligned_cols=78 Identities=5% Similarity=0.108 Sum_probs=45.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh---C
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA---F 594 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~---~ 594 (630)
+|+++|..+.. ...+...|...|+.+....+.. ...+-. ..|.||+..+- .+ .-|.-.+..+.+. .
T Consensus 3 ~iliv~~~~~~-~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~-----~~~~~~~~~l~~~~~~~ 74 (119)
T 2j48_A 3 HILLLEEEDEA-ATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PD-----QSCLLLLQHLREHQADP 74 (119)
T ss_dssp EEEEECCCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TC-----CTHHHHHHHHHHTCCCS
T ss_pred EEEEEeCCHHH-HHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CC-----CCHHHHHHHHHhccccC
Confidence 57777766543 2345567777888877665532 222222 57888876532 11 2344444445444 5
Q ss_pred CCcEEEeccccc
Q 006803 595 RVPVLICCEAYK 606 (630)
Q Consensus 595 ~VPV~V~aet~K 606 (630)
++|+++++....
T Consensus 75 ~~~ii~~~~~~~ 86 (119)
T 2j48_A 75 HPPLVLFLGEPP 86 (119)
T ss_dssp SCCCEEEESSCC
T ss_pred CCCEEEEeCCCC
Confidence 799999876543
No 291
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=32.08 E-value=27 Score=35.21 Aligned_cols=81 Identities=9% Similarity=0.062 Sum_probs=52.6
Q ss_pred eEEEEcCCCCCchHHH-HHHHHHhCCCcEEEEcchhHH---HHhccccEEEEcceeEecCCceecccchHHHHHHHHh--
Q 006803 520 FRVVVVDSRPKHEGQA-LLRRLLAKGLSCTYTHINAVS---YIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA-- 593 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~-La~eL~~~GI~vTlI~DsAv~---~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~-- 593 (630)
-+|.+++...+-+|.. |...|.+.|++|+++....+. .-+.+.|.||++ | +.. +.+.-.++..+...
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~-d-~~~-----~~l~~~~~~~L~~yV~ 77 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILS-D-YPA-----ERMTAQAIDQLVTMVK 77 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEE-S-CCG-----GGBCHHHHHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEc-C-Ccc-----ccCCHHHHHHHHHHHH
Confidence 3677778776666655 457899999999999987663 467799999986 2 111 23344455554443
Q ss_pred CCCcEEEecccccc
Q 006803 594 FRVPVLICCEAYKF 607 (630)
Q Consensus 594 ~~VPV~V~aet~Kf 607 (630)
.|-=++++.....|
T Consensus 78 ~GGgLi~~gG~~s~ 91 (259)
T 3rht_A 78 AGCGLVMLGGWESY 91 (259)
T ss_dssp TTCEEEEECSTTSS
T ss_pred hCCeEEEecCcccc
Confidence 46667777654434
No 292
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=32.08 E-value=91 Score=25.84 Aligned_cols=82 Identities=6% Similarity=-0.059 Sum_probs=0.0
Q ss_pred cCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc---cccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 516 LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH---EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 516 ~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~---~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
....++|+|+|..+.. ...+...|.+.|..|....+..-+.-+- ..|.||+..+---.||- ...-.+-..
T Consensus 4 ~~~~~~ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~------~~~~~l~~~ 76 (137)
T 3hdg_A 4 REVALKILIVEDDTDA-REWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGL------EMLDRIKAG 76 (137)
T ss_dssp ---CCCEEEECSCHHH-HHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHH------HHHHHHHHT
T ss_pred cccccEEEEEeCCHHH-HHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHH------HHHHHHHhc
Q ss_pred hCCCcEEEeccc
Q 006803 593 AFRVPVLICCEA 604 (630)
Q Consensus 593 ~~~VPV~V~aet 604 (630)
..++|+++++..
T Consensus 77 ~~~~~ii~~s~~ 88 (137)
T 3hdg_A 77 GAKPYVIVISAF 88 (137)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCcEEEEecC
No 293
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=32.08 E-value=64 Score=32.49 Aligned_cols=89 Identities=12% Similarity=0.006 Sum_probs=55.8
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH-----hccccEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI-----MHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~Vd~VivG 568 (630)
...|+..|+..+-..+.+.+.+.| . |+++|..|.. +. |.+.|+++.+ -|..-... +.++|.|++.
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g--~-v~vid~~~~~-----~~-~~~~~~~~i~-gd~~~~~~L~~a~i~~a~~vi~~ 184 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVR-----KK-VLRSGANFVH-GDPTRVSDLEKANVRGARAVIVD 184 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC--E-EEEESCGGGH-----HH-HHHTTCEEEE-SCTTSHHHHHHTCSTTEEEEEEC
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--c-EEEEeCChhh-----hh-HHhCCcEEEE-eCCCCHHHHHhcChhhccEEEEc
Confidence 456888888877777777766655 4 8888877642 33 5667876544 34332222 3467777764
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+ +..-+..+++.||+++....++
T Consensus 185 ~~---------~d~~n~~~~~~ar~~~~~~~ii 208 (336)
T 1lnq_A 185 LE---------SDSETIHCILGIRKIDESVRII 208 (336)
T ss_dssp CS---------SHHHHHHHHHHHHTTCTTSEEE
T ss_pred CC---------ccHHHHHHHHHHHHHCCCCeEE
Confidence 32 2345677889999988753333
No 294
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=32.06 E-value=2.6e+02 Score=28.33 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=54.4
Q ss_pred CCEEEeecChH---HHHHHHHHHHHc---CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-chhHHHHhccccEEE
Q 006803 494 GDVLLTYGSSC---VVEMILLYAHEL---GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-INAVSYIMHEVTRVF 566 (630)
Q Consensus 494 gdvILT~g~S~---tV~~vL~~A~e~---gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsAv~~iM~~Vd~Vi 566 (630)
..+||+++-|. .+...+.++... ...+.|++.-.+... ..+...+.+.++++.+.. ..-+..+|..+|+||
T Consensus 180 ~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~~--~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI 257 (365)
T 3s2u_A 180 RVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHA--EITAERYRTVAVEADVAPFISDMAAAYAWADLVI 257 (365)
T ss_dssp CCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTTH--HHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEE
T ss_pred CcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCcccc--ccccceecccccccccccchhhhhhhhccceEEE
Confidence 45788887553 445555555542 234566555443332 344566778888887764 133667788899886
Q ss_pred EcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 567 LGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 567 vGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
. +.|...++ =+-.+|+|++++
T Consensus 258 ~-------------raG~~Tv~-E~~a~G~P~Ili 278 (365)
T 3s2u_A 258 C-------------RAGALTVS-ELTAAGLPAFLV 278 (365)
T ss_dssp E-------------CCCHHHHH-HHHHHTCCEEEC
T ss_pred e-------------cCCcchHH-HHHHhCCCeEEe
Confidence 3 33433333 233579998876
No 295
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=31.99 E-value=1.1e+02 Score=26.34 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=47.5
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH-HHhc--cccEEEEcceeEecCCceecccchHHHHHHHHh-
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS-YIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA- 593 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~- 593 (630)
+..+|+|+|..+.. ...|...|...|+.|....+..-+ ..+. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 6 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~-----~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 6 RAGEILIVEDSPTQ-AEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEM-----DGYALCRWLKGQP 77 (154)
T ss_dssp -CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSS-----CHHHHHHHHHHST
T ss_pred CCCcEEEEeCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhCC
Confidence 45688888877654 334557788888888766653322 2222 5788888654 2222 244444444433
Q ss_pred --CCCcEEEecccc
Q 006803 594 --FRVPVLICCEAY 605 (630)
Q Consensus 594 --~~VPV~V~aet~ 605 (630)
.++|+++++...
T Consensus 78 ~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 78 DLRTIPVILLTILS 91 (154)
T ss_dssp TTTTSCEEEEECCC
T ss_pred CcCCCCEEEEECCC
Confidence 479999987544
No 296
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=31.84 E-value=2.1e+02 Score=26.25 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=41.1
Q ss_pred HHHHHHhCCCcEEEEcchhHHH----HhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 536 LLRRLLAKGLSCTYTHINAVSY----IMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 536 La~eL~~~GI~vTlI~DsAv~~----iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
+...|...|++|.++.|....+ .+.+=|.||+ |...|.. .-+..++-.||..|+++++++..
T Consensus 63 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~~ 128 (201)
T 3fxa_A 63 LVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILIL----ISKGGNT---GELLNLIPACKTKGSTLIGVTEN 128 (201)
T ss_dssp HHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEE----ECSSSCC---HHHHTTHHHHHHHTCEEEEEESC
T ss_pred HHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEE----EeCCCCC---HHHHHHHHHHHHcCCeEEEEECC
Confidence 4566777899999988754322 1334566654 3345543 33566778899999999998754
No 297
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=31.82 E-value=3.9e+02 Score=26.48 Aligned_cols=101 Identities=14% Similarity=0.202 Sum_probs=50.8
Q ss_pred CCEEEeecChHHHHHHHHHHH-HcCCceEEEEcCCCCCchHHHHH-HHHHh-CCCcEEEEcch---------hHHHHhc-
Q 006803 494 GDVLLTYGSSCVVEMILLYAH-ELGKQFRVVVVDSRPKHEGQALL-RRLLA-KGLSCTYTHIN---------AVSYIMH- 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~-e~gk~f~ViV~ESRP~~eG~~La-~eL~~-~GI~vTlI~Ds---------Av~~iM~- 560 (630)
..+++|-|.+..+..++.... ..+..-+|++.+ |.+.+.... ..|.+ .|+.+.++... .+-..+.
T Consensus 87 ~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~--~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~ 164 (406)
T 3cai_A 87 GGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSR--LDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK 164 (406)
T ss_dssp GGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEET--TSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT
T ss_pred CeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcC--CccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC
Confidence 356777666554444433220 112233566654 545443222 33333 58888777422 3333333
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++.+|++ ...-...|.+.. --.|+-+|+.|++.|+|
T Consensus 165 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 200 (406)
T 3cai_A 165 STRLVAV-NSASGTLGGVTD---LRAMTKLVHDVGALVVV 200 (406)
T ss_dssp TEEEEEE-ESBCTTTCBBCC---CHHHHHHHHHTTCEEEE
T ss_pred CceEEEE-eCCcCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 3333333 322233355544 25678888999998776
No 298
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=31.80 E-value=1.1e+02 Score=30.15 Aligned_cols=94 Identities=11% Similarity=0.144 Sum_probs=48.8
Q ss_pred CEEEeecChHHHHHHHHHH---HHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhcccc
Q 006803 495 DVLLTYGSSCVVEMILLYA---HELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMHEVT 563 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A---~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd 563 (630)
.+++|.|-+..+..+|..+ ...| -+|++.+ |.+.+...+.. ..|+.+.++... .+-..+..-.
T Consensus 49 ~v~~~~ggt~al~~~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~--~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~ 122 (375)
T 2fnu_A 49 HALVFNSATSALLTLYRNFSEFSADR--NEIITTP--ISFVATANMLL--ESGYTPVFAGIKNDGNIDELALEKLINERT 122 (375)
T ss_dssp EEEEESCHHHHHHHHHHHSSCCCTTS--CEEEECS--SSCTHHHHHHH--HTTCEEEECCBCTTSSBCGGGSGGGCCTTE
T ss_pred eEEEeCCHHHHHHHHHHHhcccCCCC--CEEEECC--CccHhHHHHHH--HCCCEEEEeccCCCCCCCHHHHHhhcCcCc
Confidence 5666655555555555544 2223 3566643 55656544433 478887776432 1111222112
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++|+-.+. .|.+.. --.|+-+|+.||++++|
T Consensus 123 ~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~ 153 (375)
T 2fnu_A 123 KAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLS 153 (375)
T ss_dssp EEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEE
T ss_pred eEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEE
Confidence 33332332 454433 25677788899998877
No 299
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=31.80 E-value=68 Score=31.43 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=45.0
Q ss_pred EEEeecChHHHHHHHHHHHHcCC-ceEEEEc-CCCCCchHHHHHHHHHhCCCcEEEEc-----chhHHHHhc--cccEEE
Q 006803 496 VLLTYGSSCVVEMILLYAHELGK-QFRVVVV-DSRPKHEGQALLRRLLAKGLSCTYTH-----INAVSYIMH--EVTRVF 566 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk-~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI~-----DsAv~~iM~--~Vd~Vi 566 (630)
.||.-|+.+....+|... +.|. .++|..+ -.+|...|.+.| .++|||+.++. |..+...+. ++|.++
T Consensus 12 ~vl~SG~gsnl~all~~~-~~~~~~~~I~~Vis~~~~a~~l~~A---~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dliv 87 (215)
T 3kcq_A 12 GVLISGRGSNLEALAKAF-STEESSVVISCVISNNAEARGLLIA---QSYGIPTFVVKRKPLDIEHISTVLREHDVDLVC 87 (215)
T ss_dssp EEEESSCCHHHHHHHHHT-CCC-CSEEEEEEEESCTTCTHHHHH---HHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEE
T ss_pred EEEEECCcHHHHHHHHHH-HcCCCCcEEEEEEeCCcchHHHHHH---HHcCCCEEEeCcccCChHHHHHHHHHhCCCEEE
Confidence 466667766666666554 4443 3554433 347777775444 45799999864 244555555 589988
Q ss_pred Ecce-eEec
Q 006803 567 LGAS-SVLS 574 (630)
Q Consensus 567 vGAd-aI~a 574 (630)
+-+- .|+.
T Consensus 88 lagy~~IL~ 96 (215)
T 3kcq_A 88 LAGFMSILP 96 (215)
T ss_dssp ESSCCSCCC
T ss_pred EeCCceEeC
Confidence 7543 4553
No 300
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=31.75 E-value=1.8e+02 Score=29.46 Aligned_cols=105 Identities=18% Similarity=0.194 Sum_probs=53.5
Q ss_pred cCCCEEEeecChHHHH--HHHHHHHH--cCC-------ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-------h
Q 006803 492 RDGDVLLTYGSSCVVE--MILLYAHE--LGK-------QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-------N 553 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~--~vL~~A~e--~gk-------~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------s 553 (630)
....+++|-|.+..+. .++..... .|. .-+|+|.+ |.+.+...+ +...|+.+..+.. .
T Consensus 86 ~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~--p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~~ 161 (423)
T 3ez1_A 86 KAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTV--PGYDRHFLL--LQTLGFELLTVDMQSDGPDVD 161 (423)
T ss_dssp CGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEE--SCCHHHHHH--HHHHTCEEEEEEEETTEECHH
T ss_pred ChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcC--CCcHHHHHH--HHHcCCEEEeccCCCCCCCHH
Confidence 3457888888777765 34443333 221 24566543 667665544 3345777666531 3
Q ss_pred hHHHHh---ccccEEEEcceeEecCCceecccchHHHHHHH-HhCCCcEEE
Q 006803 554 AVSYIM---HEVTRVFLGASSVLSNGTTYSRVGTACVAMVA-HAFRVPVLI 600 (630)
Q Consensus 554 Av~~iM---~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaA-k~~~VPV~V 600 (630)
.+-..+ .++..|++=...=-..|.++..----.|+-+| ++|++.+++
T Consensus 162 ~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~ 212 (423)
T 3ez1_A 162 AVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFA 212 (423)
T ss_dssp HHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEE
T ss_pred HHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEE
Confidence 344444 23434432211112234444333333566666 889987765
No 301
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=31.74 E-value=3.8e+02 Score=26.24 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=53.9
Q ss_pred CCEEEeecChHHHHHHHHHH-HHcCCceEEEEcCCCCCchHHHHH-HH-HHhCCCcEEEEcch-------hHHHH---hc
Q 006803 494 GDVLLTYGSSCVVEMILLYA-HELGKQFRVVVVDSRPKHEGQALL-RR-LLAKGLSCTYTHIN-------AVSYI---MH 560 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A-~e~gk~f~ViV~ESRP~~eG~~La-~e-L~~~GI~vTlI~Ds-------Av~~i---M~ 560 (630)
..+++|.|-+..+..++..+ .+.| -+|++. .|.+.|.... .. ....|+.+..+... -+..+ +.
T Consensus 77 ~~v~~~~g~t~a~~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 152 (390)
T 1elu_A 77 NTITITDNVTTGCDIVLWGLDWHQG--DEILLT--DCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG 152 (390)
T ss_dssp GGEEEESSHHHHHHHHHHHSCCCTT--CEEEEE--TTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC
T ss_pred HHEEEeCChHHHHHHHHhCCCCCCC--CEEEEe--cCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC
Confidence 35777777666666666554 2333 356654 4566666543 22 23458888777532 12222 22
Q ss_pred -cccEEEEcceeEecCCceecccchHHHHHHHH----hCCCcEEE
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH----AFRVPVLI 600 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk----~~~VPV~V 600 (630)
++..|++ ...-...|.++. --.|+-+|+ .|++.++|
T Consensus 153 ~~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~ 193 (390)
T 1elu_A 153 PKTRLVIL-SHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLV 193 (390)
T ss_dssp TTEEEEEE-ESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEE
T ss_pred CCceEEEE-eccccCCceecC---HHHHHHHHhhhhhhcCcEEEE
Confidence 3334433 332233455555 346777788 88987766
No 302
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=31.54 E-value=49 Score=30.53 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=45.4
Q ss_pred ecChHHHHHHHHHHHH-cC--CceEEEEcCCCCCchH----HHHHHHHHhCCCcEEEEcchhH-HHHhccccEEEEc
Q 006803 500 YGSSCVVEMILLYAHE-LG--KQFRVVVVDSRPKHEG----QALLRRLLAKGLSCTYTHINAV-SYIMHEVTRVFLG 568 (630)
Q Consensus 500 ~g~S~tV~~vL~~A~e-~g--k~f~ViV~ESRP~~eG----~~La~eL~~~GI~vTlI~DsAv-~~iM~~Vd~VivG 568 (630)
.|+|..++.++++..+ .| ..|.|.-.-+.++..| .+....|.+.||++. ..--.+ ...+.. |+||.=
T Consensus 15 ~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~p~a~~~l~~~Gid~s-~~ar~l~~~~~~~-DlIi~M 89 (163)
T 1u2p_A 15 ICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTD-HRAAQVGTEHLAA-DLLVAL 89 (163)
T ss_dssp SSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCC-CCCCBCCHHHHTS-SEEEES
T ss_pred HhHHHHHHHHHHHHHHHCCCCCcEEEEecccCCCcCCCCCCHHHHHHHHHcCcCCC-ceeeECChhhccC-CEEEEe
Confidence 3678899999998654 33 3589998888887655 244588999999986 321122 334556 887664
No 303
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=31.35 E-value=89 Score=25.85 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=44.5
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--hHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHH-hC
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH-AF 594 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk-~~ 594 (630)
..+|+|+|..+.. ...+...|...|+.|....+. ++..+-. ..|.||+..+- ..+..-..-|.-.+..+-+ ..
T Consensus 3 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~--~~~~~~~~~g~~~~~~l~~~~~ 79 (140)
T 2qr3_A 3 LGTIIIVDDNKGV-LTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNF--TSGINNGNEGLFWLHEIKRQYR 79 (140)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTT--TC-----CCHHHHHHHHHHHCT
T ss_pred CceEEEEeCCHHH-HHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCc--CCCCCCCccHHHHHHHHHhhCc
Confidence 4577788776543 233456677778877755542 2222222 47888876432 1000001123333333333 34
Q ss_pred CCcEEEeccccc
Q 006803 595 RVPVLICCEAYK 606 (630)
Q Consensus 595 ~VPV~V~aet~K 606 (630)
++|+++++....
T Consensus 80 ~~~ii~ls~~~~ 91 (140)
T 2qr3_A 80 DLPVVLFTAYAD 91 (140)
T ss_dssp TCCEEEEEEGGG
T ss_pred CCCEEEEECCCC
Confidence 899999876543
No 304
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=31.32 E-value=2.5e+02 Score=28.09 Aligned_cols=112 Identities=9% Similarity=-0.002 Sum_probs=54.7
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEE-EcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc-----
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVV-VVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA----- 569 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA----- 569 (630)
.|..+|....-...+....+....++|+ |++..+.. .. ....+.||++....|-.-..--.++|.|++..
T Consensus 4 rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~-~~---~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 79 (344)
T 3mz0_A 4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEA-AQ---KVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH 79 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHH-HH---HHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred EEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHH-HH---HHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence 3556666554444444333234457755 55543321 11 22233576666655533222223588888753
Q ss_pred ------------eeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccc
Q 006803 570 ------------SSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERV 611 (630)
Q Consensus 570 ------------daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~ 611 (630)
+.++.-=-..+--....+.-+|+.+++.++.++-.+.|++.+
T Consensus 80 ~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~ 133 (344)
T 3mz0_A 80 ESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGY 133 (344)
T ss_dssp HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHH
T ss_pred HHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHH
Confidence 222222222333344455566667777775555556665544
No 305
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.13 E-value=1.9e+02 Score=23.17 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=41.7
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh---C
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA---F 594 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~---~ 594 (630)
+|+++|..|.. ...+...|...|+.+....+.. ..++-. ..|.||+..+ +.+. -|.-.+..+-+. .
T Consensus 3 ~ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~~ 74 (124)
T 1mb3_A 3 KVLIVEDNELN-MKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEI-----SGLEVTKWLKEDDDLA 74 (124)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSS-----BHHHHHHHHHHSTTTT
T ss_pred EEEEEcCCHHH-HHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCcccc
Confidence 57777766543 3334566777888777655432 222222 4788888643 3322 243334444332 3
Q ss_pred CCcEEEecccc
Q 006803 595 RVPVLICCEAY 605 (630)
Q Consensus 595 ~VPV~V~aet~ 605 (630)
++|+++++...
T Consensus 75 ~~~ii~~s~~~ 85 (124)
T 1mb3_A 75 HIPVVAVTAFA 85 (124)
T ss_dssp TSCEEEEC---
T ss_pred CCcEEEEECCC
Confidence 79999987653
No 306
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=30.94 E-value=2.5e+02 Score=26.06 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=45.8
Q ss_pred CCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc-------
Q 006803 494 GDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------- 560 (630)
Q Consensus 494 gdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------- 560 (630)
|.+||..|-++-+ ..+.+...++| .+|+++..|.......+..+|...|..+.++ .| ..+..++.
T Consensus 5 ~~~vlItGasggiG~~~a~~l~~~G--~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T 2hq1_A 5 GKTAIVTGSSRGLGKAIAWKLGNMG--ANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG 82 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CcEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 5677777777655 34444555555 5788886555444556667787778777665 33 23333443
Q ss_pred cccEEEEcc
Q 006803 561 EVTRVFLGA 569 (630)
Q Consensus 561 ~Vd~VivGA 569 (630)
.+|.||--|
T Consensus 83 ~~d~vi~~A 91 (247)
T 2hq1_A 83 RIDILVNNA 91 (247)
T ss_dssp CCCEEEECC
T ss_pred CCCEEEECC
Confidence 678888765
No 307
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=30.87 E-value=98 Score=26.37 Aligned_cols=58 Identities=19% Similarity=0.116 Sum_probs=37.7
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC-CCchHHHHHHHHHhC--CCcEEEEcch
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR-PKHEGQALLRRLLAK--GLSCTYTHIN 553 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR-P~~eG~~La~eL~~~--GI~vTlI~Ds 553 (630)
..|..|.+..+...+...|.. ...|.++++|.. |...|..+++.|.+. .+++.+++..
T Consensus 25 ~~~~~v~~~~~~~~a~~~l~~----~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 85 (151)
T 3kcn_A 25 SFDFEVTTCESGPEALACIKK----SDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGN 85 (151)
T ss_dssp TTTSEEEEESSHHHHHHHHHH----SCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECG
T ss_pred ccCceEEEeCCHHHHHHHHHc----CCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECC
Confidence 345566666665555444432 345788887754 788999999888764 4666666653
No 308
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=30.82 E-value=1.5e+02 Score=27.94 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=48.2
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH--HHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh-
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS--YIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA- 593 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~- 593 (630)
...+|+|+|..|.. ...|...|...|+.|....+..-+ .+-. ..|.||+-.+ +.++ -|.-.+..+-+.
T Consensus 22 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~-----~g~~~~~~lr~~~ 93 (250)
T 3r0j_A 22 PEARVLVVDDEANI-VELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGM-----DGFGVLRRLRADG 93 (250)
T ss_dssp SSCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSS-----CHHHHHHHHHHTT
T ss_pred CCceEEEEECCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcC
Confidence 45788888887754 233456777889888766554322 2222 5888888543 3332 244444444333
Q ss_pred CCCcEEEecccc
Q 006803 594 FRVPVLICCEAY 605 (630)
Q Consensus 594 ~~VPV~V~aet~ 605 (630)
.++|+++++...
T Consensus 94 ~~~~ii~lt~~~ 105 (250)
T 3r0j_A 94 IDAPALFLTARD 105 (250)
T ss_dssp CCCCEEEEECST
T ss_pred CCCCEEEEECCC
Confidence 479999987654
No 309
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=30.69 E-value=40 Score=33.50 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=53.8
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEccee
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 571 (630)
.+.+||..|-++.+= .++..+.++| .+|+++.-.+...-..+ ..+.. .-.+.++.-...-..+..+|.||--|-.
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~d~vih~A~~ 101 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDG--HEVTVVDNFFTGRKRNV-EHWIG-HENFELINHDVVEPLYIEVDQIYHLASP 101 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCGGGT-GGGTT-CTTEEEEECCTTSCCCCCCSEEEECCSC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCC--CEEEEEeCCCccchhhh-hhhcc-CCceEEEeCccCChhhcCCCEEEECccc
Confidence 356889889888664 3444455555 56777654332111111 11111 1234444211111123456666543321
Q ss_pred EecC---C-----ceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 572 VLSN---G-----TTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 572 I~aN---G-----~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.... . --+|-.||..+.-+|+..++.|+.+...
T Consensus 102 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~ 142 (343)
T 2b69_A 102 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTS 142 (343)
T ss_dssp CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcH
Confidence 1100 0 0246788999998998888876665443
No 310
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=30.37 E-value=1.2e+02 Score=32.67 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=50.6
Q ss_pred CCEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 494 GDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 494 gdvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
...|+.+|-.++=.. +-+.++++ .++|.+.|.++. .++.+|.+.||++.+-.+.. .+..+|.||++.- |
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~----~~~~~l~~~gi~~~~g~~~~---~~~~~d~vV~Spg-i 91 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPN----SVTQHLTALGAQIYFHHRPE---NVLDASVVVVSTA-I 91 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCC----HHHHHHHHTTCEEESSCCGG---GGTTCSEEEECTT-S
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC--CCeEEEEECCCC----HHHHHHHHCCCEEECCCCHH---HcCCCCEEEECCC-C
Confidence 456666654432221 22333444 478899998754 24577999999887644432 2456888877631 2
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
-. +...-..|++.+|||+=
T Consensus 92 ~~---------~~p~~~~a~~~gi~v~~ 110 (494)
T 4hv4_A 92 SA---------DNPEIVAAREARIPVIR 110 (494)
T ss_dssp CT---------TCHHHHHHHHTTCCEEE
T ss_pred CC---------CCHHHHHHHHCCCCEEc
Confidence 11 22344556677777663
No 311
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=30.36 E-value=1.6e+02 Score=26.42 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=45.0
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHHH-hC
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH-AF 594 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk-~~ 594 (630)
..+|+|+|..|.. ...|...|...|+.|....+..-+. .+. ..|.||+.. -+.++ -|.-.+..+-+ ..
T Consensus 4 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~-----~g~~~~~~l~~~~~ 75 (208)
T 1yio_A 4 KPTVFVVDDDMSV-REGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDM--RMPGM-----SGIELQEQLTAISD 75 (208)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEES--CCSSS-----CHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCHHH-HHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeC--CCCCC-----CHHHHHHHHHhcCC
Confidence 3477888877654 2334466777788877555433222 222 468887743 33332 24333433333 35
Q ss_pred CCcEEEeccccc
Q 006803 595 RVPVLICCEAYK 606 (630)
Q Consensus 595 ~VPV~V~aet~K 606 (630)
++||++++....
T Consensus 76 ~~~ii~ls~~~~ 87 (208)
T 1yio_A 76 GIPIVFITAHGD 87 (208)
T ss_dssp CCCEEEEESCTT
T ss_pred CCCEEEEeCCCC
Confidence 799999876543
No 312
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=30.34 E-value=2.9e+02 Score=27.32 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=51.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhc----c
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMH----E 561 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~----~ 561 (630)
.++++|.|-+..+..++..+...| -+|++.+ |.+.|... .+...|+.+..+... -+..+-. +
T Consensus 79 ~~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~ 152 (381)
T 1v2d_A 79 ESVVVTSGATEALYVLLQSLVGPG--DEVVVLE--PFFDVYLP--DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPR 152 (381)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTT
T ss_pred hhEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcC
Confidence 357777776766666666554333 3566554 34444432 345578877766432 1222222 2
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+..|++- ..--..|.++..-=-..|+-+|+.|++.+++
T Consensus 153 ~~~v~~~-~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 190 (381)
T 1v2d_A 153 TRALLLN-TPMNPTGLVFGERELEAIARLARAHDLFLIS 190 (381)
T ss_dssp EEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 3344332 1111223333221124567788899998876
No 313
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=30.29 E-value=4.4e+02 Score=29.00 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=70.1
Q ss_pred HHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCC---------Cc-----hH----HHHHHHHHhC-
Q 006803 483 IVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRP---------KH-----EG----QALLRRLLAK- 543 (630)
Q Consensus 483 Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP---------~~-----eG----~~La~eL~~~- 543 (630)
++..+.+.|. +..||..|..++=-.++......|.. ++.++|... .+ -| ..++..|.+.
T Consensus 22 ~G~~~q~~L~-~~~VlvvG~GGlGseiak~La~aGVg-~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN 99 (531)
T 1tt5_A 22 WGDHGQEALE-SAHVCLINATATGTEILKNLVLPGIG-SFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN 99 (531)
T ss_dssp HHHHHHHHHH-HCEEEEECCSHHHHHHHHHHHTTTCS-EEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC
T ss_pred cCHHHHHHHh-cCeEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC
Confidence 5666666665 46888999998877788877777864 444444322 11 12 2334677776
Q ss_pred -CCcEEEEcchhHH------HHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 544 -GLSCTYTHINAVS------YIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 544 -GI~vTlI~DsAv~------~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
++.++.+...--. .++...|.||.+.|.+- --+.+.-.|+.++|||+.+
T Consensus 100 p~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~ln~~c~~~~iplI~~ 155 (531)
T 1tt5_A 100 SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPES---------TSLRLADVLWNSQIPLLIC 155 (531)
T ss_dssp TTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHH---------HHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 4777777653221 34567899988765432 3456677888999999876
No 314
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=30.21 E-value=1.1e+02 Score=26.76 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=38.7
Q ss_pred EEeecCh-HHHHHHHHHHHHcCCceEEEEcCCCCC-chHHHHHHHHHhCCCcEEEEc
Q 006803 497 LLTYGSS-CVVEMILLYAHELGKQFRVVVVDSRPK-HEGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 497 ILT~g~S-~tV~~vL~~A~e~gk~f~ViV~ESRP~-~eG~~La~eL~~~GI~vTlI~ 551 (630)
|.++..+ ..+...|..|.++|.+++|++....-. .........|.+.|+++.+..
T Consensus 32 i~~~~~~~~~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 32 MMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp EEESSBCCHHHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEcC
Confidence 4454433 457778888889999999988765422 234556688999999998763
No 315
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=30.21 E-value=97 Score=31.70 Aligned_cols=76 Identities=9% Similarity=0.140 Sum_probs=47.6
Q ss_pred cCCceEEEEcCCCCCchHHHHHHHHHhCCCcE---------EEEcc--hhHHHHhccccEEEEcceeEecCCceecccch
Q 006803 516 LGKQFRVVVVDSRPKHEGQALLRRLLAKGLSC---------TYTHI--NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGT 584 (630)
Q Consensus 516 ~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~v---------TlI~D--sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT 584 (630)
+...++++++-..|.. ...+...+.+.|+.. .++.| .-+..+|..+|.++++.... ..|+.
T Consensus 222 ~~p~~~lvivG~g~~~-~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~~-e~gg~------ 293 (374)
T 2xci_A 222 TYSSLKLILVPRHIEN-AKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFV-NIGGH------ 293 (374)
T ss_dssp TCTTCEEEEEESSGGG-HHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSSS-SSCCC------
T ss_pred hCCCcEEEEECCCHHH-HHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCccc-CCCCc------
Confidence 3456776666444432 234556667778863 45555 67888999999988875322 23321
Q ss_pred HHHHHHHHhCCCcEEEe
Q 006803 585 ACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 585 ~~lAlaAk~~~VPV~V~ 601 (630)
..+=|-..|+||++-
T Consensus 294 --~~lEAmA~G~PVI~~ 308 (374)
T 2xci_A 294 --NLLEPTCWGIPVIYG 308 (374)
T ss_dssp --CCHHHHTTTCCEEEC
T ss_pred --CHHHHHHhCCCEEEC
Confidence 245577789999963
No 316
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=30.16 E-value=1.2e+02 Score=30.71 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=35.0
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 550 (630)
.+..|++||.+|.+++=...+..|+..|- +||+++..+.. ..++++ .|.+..+-
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga--~Vi~~~~~~~~--~~~~~~---lGa~~v~~ 229 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRK--REDAMK---MGADHYIA 229 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTT--HHHHHH---HTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHH--HHHHHH---cCCCEEEc
Confidence 46789999999995544555666666664 69998876653 234443 46655443
No 317
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=30.11 E-value=1.6e+02 Score=27.05 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=46.2
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH--HHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhCCC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV--SYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRV 596 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv--~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~V 596 (630)
.+|+|+|..|.. ...|...|...|+.|....+..- ..+-. ..|.||+..+ +.+. -|.-.+..+-+..++
T Consensus 5 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~-----~g~~~~~~l~~~~~~ 76 (230)
T 2oqr_A 5 TSVLIVEDEESL-ADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGM-----SGTDVCKQLRARSSV 76 (230)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHHHCSC
T ss_pred CeEEEEeCCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCC-----CHHHHHHHHHcCCCC
Confidence 578888877654 23345667778888776554322 22222 5788888543 2222 244445555455789
Q ss_pred cEEEecccc
Q 006803 597 PVLICCEAY 605 (630)
Q Consensus 597 PV~V~aet~ 605 (630)
|+++++...
T Consensus 77 ~ii~lt~~~ 85 (230)
T 2oqr_A 77 PVIMVTARD 85 (230)
T ss_dssp SEEEEECCH
T ss_pred CEEEEeCCC
Confidence 999987654
No 318
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=30.07 E-value=49 Score=35.56 Aligned_cols=96 Identities=8% Similarity=-0.031 Sum_probs=50.6
Q ss_pred HHHHH-hhccCCCEEEeecChHHHHHHHHHHHHc---CCceEEEEcCC-CC--Cc--------------hHHHHHHHHHh
Q 006803 484 VRHAA-TKVRDGDVLLTYGSSCVVEMILLYAHEL---GKQFRVVVVDS-RP--KH--------------EGQALLRRLLA 542 (630)
Q Consensus 484 a~~a~-~~I~dgdvILT~g~S~tV~~vL~~A~e~---gk~f~ViV~ES-RP--~~--------------eG~~La~eL~~ 542 (630)
++.|+ .+|+||++|...+++++-..++....++ -++++|+..-+ .+ ++ -|-. .+++.+
T Consensus 14 a~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~~~~~dLtli~~~~~~~~~~~~~~l~~~i~~~~~~~g~~-~r~~i~ 92 (439)
T 3d3u_A 14 ADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGN-SRPASR 92 (439)
T ss_dssp HHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECSCBSSCCTTSSGGGTTTEEEEC-------------
T ss_pred HHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhhCCCCCEEEEEecCCCcchhccHHhCCcEEEEECCCChH-HHHHHH
Confidence 34566 7899999999998876444444444433 25677774321 11 12 1222 233333
Q ss_pred CC-CcEEEEcchhH-HHHhc---cccEEEEcceeEecCCceec
Q 006803 543 KG-LSCTYTHINAV-SYIMH---EVTRVFLGASSVLSNGTTYS 580 (630)
Q Consensus 543 ~G-I~vTlI~DsAv-~~iM~---~Vd~VivGAdaI~aNG~V~N 580 (630)
.| +.++-+..+.+ -|+.. .+|..|+.|..+-.+|.+.-
T Consensus 93 ~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~ 135 (439)
T 3d3u_A 93 DRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSF 135 (439)
T ss_dssp --------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEEC
T ss_pred cCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEE
Confidence 44 22332222333 34443 58999999999999998855
No 319
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=29.99 E-value=1.3e+02 Score=29.17 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=43.2
Q ss_pred EEEeecChHHHHHHHHHHHHcCC-ceEEE-EcCCCCCchHHHHHHHHHhCCCcEEEEc----------chhHHHHhc--c
Q 006803 496 VLLTYGSSCVVEMILLYAHELGK-QFRVV-VVDSRPKHEGQALLRRLLAKGLSCTYTH----------INAVSYIMH--E 561 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk-~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~ 561 (630)
.||.-|+.+....+|.. .+.|. .++|. |+-.+|...|...+ .+.|||+.++. |..+-..+. +
T Consensus 4 ~vl~Sg~gsnl~ali~~-~~~~~~~~~i~~Vis~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~ 79 (212)
T 1jkx_A 4 VVLISGNGSNLQAIIDA-CKTNKIKGTVRAVFSNKADAFGLERA---RQAGIATHTLIASAFDSREAYDRELIHEIDMYA 79 (212)
T ss_dssp EEEESSCCHHHHHHHHH-HHTTSSSSEEEEEEESCTTCHHHHHH---HHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGC
T ss_pred EEEEECCcHHHHHHHHH-HHcCCCCceEEEEEeCCCchHHHHHH---HHcCCcEEEeCcccccchhhccHHHHHHHHhcC
Confidence 46666777765555554 44453 35543 33344566565444 56799998865 234444455 6
Q ss_pred ccEEEEcce-eEe
Q 006803 562 VTRVFLGAS-SVL 573 (630)
Q Consensus 562 Vd~VivGAd-aI~ 573 (630)
+|.+|+-+- .|+
T Consensus 80 ~Dliv~agy~~il 92 (212)
T 1jkx_A 80 PDVVVLAGFMRIL 92 (212)
T ss_dssp CSEEEESSCCSCC
T ss_pred CCEEEEeChhhhC
Confidence 899888543 554
No 320
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=29.99 E-value=1.5e+02 Score=30.29 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=48.7
Q ss_pred EEEeecChHHHHHHHHHH---HHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-----------------hH
Q 006803 496 VLLTYGSSCVVEMILLYA---HELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-----------------AV 555 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A---~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-----------------Av 555 (630)
.|.|++..+-|..++.-| .+.|-..+|+.. +. +...+...|+++.-+... ..
T Consensus 4 li~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~---~~-----~~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 75 (404)
T 3h4t_A 4 LITGCGSRGDTEPLVALAARLRELGADARMCLP---PD-----YVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVV 75 (404)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEC---GG-----GHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGGH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeC---HH-----HHHHHHHcCCceeecCCCHHHHhccccCCHHHHHHHH
Confidence 366778777665554443 345655544432 22 234455678877666421 00
Q ss_pred HHHh----ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 556 SYIM----HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 556 ~~iM----~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
...+ .....++-++|.|+.+|.. ......+++|...+||++.++-+
T Consensus 76 ~~~~~~~~~~l~~~~~~pD~Vi~~~~~---~~~~~a~~~A~~lgiP~v~~~~~ 125 (404)
T 3h4t_A 76 TEVVAEWFDKVPAAIEGCDAVVTTGLL---PAAVAVRSMAEKLGIPYRYTVLS 125 (404)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEECH---HHHHHHHHHHHHHTCCEEEEESS
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCch---hhhhhhhhHHhhcCCCEEEEEcC
Confidence 1111 1100011145666555431 11222267899999999966533
No 321
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=29.69 E-value=3.3e+02 Score=27.32 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=50.2
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----------hHHHHhc-cc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----------AVSYIMH-EV 562 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~-~V 562 (630)
..+++|.|.+..+..++..+...| -+|++.+ |.+.|...+ +...|+.+..+... .+-..+. ++
T Consensus 102 ~~v~~t~g~~~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 175 (406)
T 1xi9_A 102 DDVRVTAAVTEALQLIFGALLDPG--DEILVPG--PSYPPYTGL--VKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRT 175 (406)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHHH--HHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTE
T ss_pred HHEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCCccHHHH--HHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCc
Confidence 467777766666666665543333 3555543 455554433 34467776665421 1222222 23
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..|++- ..--..|.++..-=--.|+-+|+.|++.+++
T Consensus 176 ~~v~i~-~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 212 (406)
T 1xi9_A 176 KAIAVI-NPNNPTGALYDKKTLEEILNIAGEYEIPVIS 212 (406)
T ss_dssp EEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEE-CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 334331 1111223333222234567778899998876
No 322
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=29.57 E-value=1.6e+02 Score=29.53 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=50.5
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhC--CCcEEEEcchhHHHHhccccEEEE
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAK--GLSCTYTHINAVSYIMHEVTRVFL 567 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~--GI~vTlI~DsAv~~iM~~Vd~Viv 567 (630)
.|.++|..|..++...++..+.+.|-. +|+|+ .|-......++.++... ++.+..+....+...+.++|.||-
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~~-~v~i~-~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVIn 200 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGVQ-KLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVN 200 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCS-EEEEE-CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCC-EEEEE-ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEE
Confidence 477899999988888888877776642 45554 34334456677777755 466666665566677888898874
No 323
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=29.53 E-value=1.5e+02 Score=28.26 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=50.5
Q ss_pred HhhccC-CCEEEeecChHHHHHHHHHHHHcC---CceEEEEcC---CCC----CchHHHHHHHHHh-CCCcEEEEcchhH
Q 006803 488 ATKVRD-GDVLLTYGSSCVVEMILLYAHELG---KQFRVVVVD---SRP----KHEGQALLRRLLA-KGLSCTYTHINAV 555 (630)
Q Consensus 488 ~~~I~d-gdvILT~g~S~tV~~vL~~A~e~g---k~f~ViV~E---SRP----~~eG~~La~eL~~-~GI~vTlI~DsAv 555 (630)
.+.|.+ ++ +|-.+..+|...++....+.+ .+.+|+-++ +-| ...-..+.+.|.+ .+++..++.+...
T Consensus 22 ~~~i~~~~~-~i~ls~G~T~~~~~~~L~~~~~~~~~v~v~~ldEr~gv~~~~~~sn~~~~~~~l~~~~~~~~~~~~~~~~ 100 (234)
T 2ri0_A 22 EEEITFGAK-TLGLATGSTPLELYKEIRESHLDFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFKKSYLPNGLA 100 (234)
T ss_dssp HHHHHTTCC-EEEECCSSTTHHHHHHHHTSCCCCTTCEEEESEEETTCCTTSTTSHHHHHHHHTTTTSCCSEEECCCTTC
T ss_pred HHHHHhCCC-EEEEcCCCCHHHHHHHHHhcCCChhheEEEeCeeecCCCCCChHHHHHHHHHHHhccCCCcHhhcCCCCC
Confidence 334443 45 667777777777776665422 456777665 222 2223344455554 4888888865421
Q ss_pred ----------HHHhc--cccEEEEcceeEecCCceec
Q 006803 556 ----------SYIMH--EVTRVFLGASSVLSNGTTYS 580 (630)
Q Consensus 556 ----------~~iM~--~Vd~VivGAdaI~aNG~V~N 580 (630)
...+. .+|.+|+|-= .||.+..
T Consensus 101 ~~~~~~~~~y~~~i~~~~~Dl~llGiG---~dgh~a~ 134 (234)
T 2ri0_A 101 ADLAKETEYYDQILAQYPIDLQILGIG---RNAHIGF 134 (234)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEECCC---TTSCBTT
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEccC---CCCCchh
Confidence 11222 5899999843 6665543
No 324
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=29.35 E-value=1.7e+02 Score=26.40 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=47.3
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEE-EEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCT-YTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA 593 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vT-lI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~ 593 (630)
...+|+|+|..|.. ...|...|...|+.+. ...+.. +..+-. ..|.||+..+ +.+ --|.-.+..+-..
T Consensus 12 m~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~-----~~g~~~~~~l~~~ 83 (205)
T 1s8n_A 12 VPRRVLIAEDEALI-RMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPR-----RDGIDAASEIASK 83 (205)
T ss_dssp CCCEEEEECSSHHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSS-----SCHHHHHHHHHHT
T ss_pred CCccEEEEECCHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCC-----CChHHHHHHHHhc
Confidence 34688888887654 2334466777888877 444322 222222 5788888543 222 2244445555555
Q ss_pred CCCcEEEeccccc
Q 006803 594 FRVPVLICCEAYK 606 (630)
Q Consensus 594 ~~VPV~V~aet~K 606 (630)
+..||++++....
T Consensus 84 ~~~pii~lt~~~~ 96 (205)
T 1s8n_A 84 RIAPIVVLTAFSQ 96 (205)
T ss_dssp TCSCEEEEEEGGG
T ss_pred CCCCEEEEecCCC
Confidence 6679999876543
No 325
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=29.33 E-value=1.3e+02 Score=31.88 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=52.5
Q ss_pred eecChHHHHHHHHHHHHcCCceEEEEcCCCCCchH-HHHH--------HHHHhCCCcEEEEcc--------hhHHHHhc-
Q 006803 499 TYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG-QALL--------RRLLAKGLSCTYTHI--------NAVSYIMH- 560 (630)
Q Consensus 499 T~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG-~~La--------~eL~~~GI~vTlI~D--------sAv~~iM~- 560 (630)
|.+-+..+..+|....+.| -+|++.+. |.+.| ..+. ..|...|+.++++.. ..+-..+.
T Consensus 97 ~~sGt~Ai~~al~all~pG--D~Vl~~~~-~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~ 173 (427)
T 3i16_A 97 FVNGTHALGAALFGNLRPG--NTMLSVCG-EPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKE 173 (427)
T ss_dssp CCSHHHHHHHHHHHHCCTT--CEEEESSS-SCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--CEEEEeCC-CccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhC
Confidence 4444434444444333333 46666653 44444 3344 446677998888753 33444443
Q ss_pred --cccEEEEcceeEecCCceecccchH----HHHHHHHh--CCCcEEEe
Q 006803 561 --EVTRVFLGASSVLSNGTTYSRVGTA----CVAMVAHA--FRVPVLIC 601 (630)
Q Consensus 561 --~Vd~VivGAdaI~aNG~V~NKiGT~----~lAlaAk~--~~VPV~V~ 601 (630)
+..+|++... -|...|..|+. .++-+|+. |++.|+|=
T Consensus 174 ~~~tklV~i~~s----~~~p~nptg~i~dl~~i~~la~~~~~g~~livD 218 (427)
T 3i16_A 174 DESITLVHIQRS----TGYGWRRALLIEDIKSIVDCVKNIRKDIICFVD 218 (427)
T ss_dssp CTTEEEEEEECS----CCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCCEEEEEEcC----CCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3445544321 24456676763 46777888 99988873
No 326
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=29.24 E-value=1.7e+02 Score=26.65 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=44.6
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHHH-hCC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH-AFR 595 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk-~~~ 595 (630)
.+|+|+|..|.. ...|...|...|+.|....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+-+ ..+
T Consensus 3 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~-----~g~~~~~~lr~~~~~ 74 (225)
T 1kgs_A 3 VRVLVVEDERDL-ADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVH-----DGWEILKSMRESGVN 74 (225)
T ss_dssp CEEEEECSSHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHTTCC
T ss_pred ceEEEEeCCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCCC
Confidence 467788877654 2334466777888877555432222 122 5788887543 2222 24333444433 348
Q ss_pred CcEEEeccccc
Q 006803 596 VPVLICCEAYK 606 (630)
Q Consensus 596 VPV~V~aet~K 606 (630)
+|+++++....
T Consensus 75 ~~ii~ls~~~~ 85 (225)
T 1kgs_A 75 TPVLMLTALSD 85 (225)
T ss_dssp CCEEEEESSCH
T ss_pred CCEEEEeCCCC
Confidence 99999876543
No 327
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=28.94 E-value=93 Score=31.32 Aligned_cols=71 Identities=8% Similarity=0.005 Sum_probs=38.9
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEE-EcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVV-VVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
.|..+|..+.....+... ...++|+ |++..|.....+++..+.+.|+.+....|-.--.--.++|.|+|..
T Consensus 4 rvgiiG~G~~~~~~~~~l---~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~t 75 (337)
T 3ip3_A 4 KICVIGSSGHFRYALEGL---DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINT 75 (337)
T ss_dssp EEEEECSSSCHHHHHTTC---CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECS
T ss_pred EEEEEccchhHHHHHHhc---CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeC
Confidence 355556543333222222 3456654 6676664445566666677788766655532222224699998863
No 328
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=28.80 E-value=3.4e+02 Score=27.57 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=50.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc-------hhHHHHhc-------
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI-------NAVSYIMH------- 560 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~------- 560 (630)
.+++|.|.+..+..++....+.| -+|++. .|.+.|... .+...|+.+..+.. ..+-..+.
T Consensus 110 ~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~--~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~ 183 (425)
T 2r2n_A 110 DLCVTSGSQQGLCKVFEMIINPG--DNVLLD--EPAYSGTLQ--SLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDA 183 (425)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHHH--HHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTS
T ss_pred cEEEeCcHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHH--HHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhcccc
Confidence 56777776666665555543333 355554 467766543 34556887776642 22333343
Q ss_pred ------cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 561 ------EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 561 ------~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
++..|++=..--...|.++..-=-..|+-+|+.|++.+++
T Consensus 184 ~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~ 229 (425)
T 2r2n_A 184 KNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIE 229 (425)
T ss_dssp SSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 1333322111111223333321122677788999986665
No 329
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=28.79 E-value=3.2e+02 Score=26.91 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=56.3
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc-cc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH-EV 562 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-~V 562 (630)
..+++|.|-+..+..++....+.| -+|++.+ |.+.|.. ..+...|..+..+.. ..+-..+. ++
T Consensus 82 ~~v~~~~g~~~a~~~~~~~l~~~g--d~Vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 155 (375)
T 3op7_A 82 EQILQTNGATGANLLVLYSLIEPG--DHVISLY--PTYQQLY--DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTT 155 (375)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SSCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTC
T ss_pred hhEEEcCChHHHHHHHHHHhcCCC--CEEEEeC--CCchhHH--HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCC
Confidence 467777666666666665543333 3455543 5555543 334556877766642 12333333 45
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..|++- ..-...|.++..----.|+-+|+.||+.+++
T Consensus 156 ~~v~~~-~~~nptG~~~~~~~l~~i~~la~~~~~~li~ 192 (375)
T 3op7_A 156 KMICIN-NANNPTGAVMDRTYLEELVEIASEVGAYILS 192 (375)
T ss_dssp CEEEEE-SSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred eEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 566543 2223445555544456677789999998887
No 330
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=28.76 E-value=1e+02 Score=25.78 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=45.7
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCc--EEEEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLS--CTYTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~--vTlI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
...+|+|+|..+.. ...|...|...|.. +....+.. +..+-. ..|.||+..+- .+ .-|.-.+..+-+
T Consensus 4 ~~~~ILivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDD-IALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL--PI-----ANGFEVMSAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHH-HHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC--GG-----GCHHHHHHHHHS
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC--CC-----CCHHHHHHHHHh
Confidence 35688888877653 33355778888887 43343322 222222 57888886542 22 234444444443
Q ss_pred ---hCCCcEEEeccccc
Q 006803 593 ---AFRVPVLICCEAYK 606 (630)
Q Consensus 593 ---~~~VPV~V~aet~K 606 (630)
..++|+++++....
T Consensus 76 ~~~~~~~pii~~s~~~~ 92 (144)
T 3kht_A 76 PGANQHTPIVILTDNVS 92 (144)
T ss_dssp SSTTTTCCEEEEETTCC
T ss_pred cccccCCCEEEEeCCCC
Confidence 35799999986543
No 331
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=28.66 E-value=1.4e+02 Score=29.32 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=49.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhc-cccE
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMH-EVTR 564 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-~Vd~ 564 (630)
..+++|-|-+..+..++....+.| -+|++.+ |.+.+.. ..+...|+.+..+... .+-..+. ++..
T Consensus 85 ~~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~ 158 (363)
T 3ffh_A 85 EELIFTAGVDELIELLTRVLLDTT--TNTVMAT--PTFVQYR--QNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTI 158 (363)
T ss_dssp GGEEEESSHHHHHHHHHHHHCSTT--CEEEEEE--SSCHHHH--HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEE
T ss_pred hhEEEeCCHHHHHHHHHHHHccCC--CEEEEcC--CChHHHH--HHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCE
Confidence 456777666666555555443333 3566654 5665533 3344468887777532 2333332 4455
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhC--CCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAF--RVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~--~VPV~V 600 (630)
|++ ...-...|.++..- .+.-+++.+ |+.+++
T Consensus 159 v~~-~~p~nptG~~~~~~---~l~~l~~~~~~~~~li~ 192 (363)
T 3ffh_A 159 VWI-CNPNNPTGNYIELA---DIQAFLDRVPSDVLVVL 192 (363)
T ss_dssp EEE-ESSCTTTCCCCCHH---HHHHHHTTSCTTSEEEE
T ss_pred EEE-eCCCCCcCCCcCHH---HHHHHHHhCCCCcEEEE
Confidence 554 22222234333222 355555555 777766
No 332
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=28.60 E-value=1.9e+02 Score=23.44 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=45.4
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCC-cEEEEcch--hHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGL-SCTYTHIN--AVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~Ds--Av~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
++.++|+|+|..|.. ...+...|...|+ .+....+. ++..+.. ..|.||+..+ +.+. -|.-.+..+-+
T Consensus 2 ~~~~~ilivdd~~~~-~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~l~~~l~~ 73 (128)
T 1jbe_A 2 DKELKFLVVDDFSTM-RRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNM-----DGLELLKTIRA 73 (128)
T ss_dssp CTTCCEEEECSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSS-----CHHHHHHHHHC
T ss_pred CCccEEEEECCCHHH-HHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHHh
Confidence 355678888887654 3344566777888 55555543 2223322 4788887543 3322 24333334333
Q ss_pred ---hCCCcEEEecccc
Q 006803 593 ---AFRVPVLICCEAY 605 (630)
Q Consensus 593 ---~~~VPV~V~aet~ 605 (630)
..++|+++++...
T Consensus 74 ~~~~~~~~ii~~s~~~ 89 (128)
T 1jbe_A 74 XXAMSALPVLMVTAEA 89 (128)
T ss_dssp --CCTTCCEEEEESSC
T ss_pred hcccCCCcEEEEecCc
Confidence 2368999887653
No 333
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.53 E-value=1.1e+02 Score=24.83 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=46.3
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH--HHhc-cccEEEEcceeEecCCceecccchHHHHHHHH---
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS--YIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH--- 592 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk--- 592 (630)
..+|+|+|..+.. ...|...|.+.|+.|....+..-+ .+-. ..|.||+..+- .+ .-|.-.+..+-+
T Consensus 3 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~l~~~~~ 74 (127)
T 3i42_A 3 LQQALIVEDYQAA-AETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PD-----TSGLALVKQLRALPM 74 (127)
T ss_dssp CEEEEEECSCHHH-HHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SS-----SBHHHHHHHHHHSCC
T ss_pred cceEEEEcCCHHH-HHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhhhc
Confidence 3577888776643 334557777888877766653322 2221 57888886542 22 224444444444
Q ss_pred hCCCcEEEeccccc
Q 006803 593 AFRVPVLICCEAYK 606 (630)
Q Consensus 593 ~~~VPV~V~aet~K 606 (630)
..++||++++....
T Consensus 75 ~~~~~ii~~s~~~~ 88 (127)
T 3i42_A 75 EKTSKFVAVSGFAK 88 (127)
T ss_dssp SSCCEEEEEECC-C
T ss_pred cCCCCEEEEECCcc
Confidence 35799999876543
No 334
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=28.40 E-value=88 Score=31.13 Aligned_cols=69 Identities=25% Similarity=0.327 Sum_probs=40.3
Q ss_pred hccCCCEEEeec-ChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-h-HHHHhccccEEE
Q 006803 490 KVRDGDVLLTYG-SSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-A-VSYIMHEVTRVF 566 (630)
Q Consensus 490 ~I~dgdvILT~g-~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-A-v~~iM~~Vd~Vi 566 (630)
.+..|++||.+| .+++=...+..|+..|- +||++.+ +. -..+++ +.|.+.++-... . ....+..+|.||
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga--~vi~~~~-~~--~~~~~~---~lGa~~~i~~~~~~~~~~~~~g~D~v~ 220 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGT--TVITTAS-KR--NHAFLK---ALGAEQCINYHEEDFLLAISTPVDAVI 220 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEEC-HH--HHHHHH---HHTCSEEEETTTSCHHHHCCSCEEEEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCC--EEEEEec-cc--hHHHHH---HcCCCEEEeCCCcchhhhhccCCCEEE
Confidence 467899999998 44444555556666664 7887753 22 133444 457775543322 1 444445677766
No 335
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=28.33 E-value=89 Score=30.36 Aligned_cols=98 Identities=16% Similarity=0.050 Sum_probs=52.8
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH----h--ccccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI----M--HEVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i----M--~~Vd~VivG 568 (630)
.+++|.|-+..+..++..+.+.| -+|++.+ |.+.|..+...+...|+.+.++....-+.+ + .++..|++
T Consensus 53 ~i~~~~g~t~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~v~~- 127 (352)
T 1iug_A 53 VLILTGSGTLAMEALVKNLFAPG--ERVLVPV--YGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLL- 127 (352)
T ss_dssp EEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCCSSCSEEEE-
T ss_pred eEEEcCchHHHHHHHHHhccCCC--CeEEEEe--CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhccCCcEEEE-
Confidence 46666666655555555543333 3566654 445555433445668988887753210000 1 23444444
Q ss_pred ceeEecCCceecccchHHHHHHHHhC--CCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAF--RVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~--~VPV~V 600 (630)
.+.-...|.+.. --.|+-+|+.| |+.++|
T Consensus 128 ~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~ 158 (352)
T 1iug_A 128 VHSETSTGALAD---LPALARAFKEKNPEGLVGA 158 (352)
T ss_dssp ESEETTTTEECC---HHHHHHHHHHHCTTCEEEE
T ss_pred EEecCCcceecC---HHHHHHHHHhhCCCCEEEE
Confidence 233333465544 24677788888 887776
No 336
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=28.00 E-value=1.7e+02 Score=23.44 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=42.7
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHH-HhCCC
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVA-HAFRV 596 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaA-k~~~V 596 (630)
+|+++|..+.. ...+...|...|+.+....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+- ...++
T Consensus 2 ~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~-----~g~~~~~~l~~~~~~~ 73 (121)
T 2pl1_A 2 RVLVVEDNALL-RHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDE-----DGLSLIRRWRSNDVSL 73 (121)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSS-----CHHHHHHHHHHTTCCS
T ss_pred eEEEEeCcHHH-HHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhcCCCC
Confidence 56777766543 2334566777888877666533222 222 4788887543 3322 2332233332 33579
Q ss_pred cEEEecccc
Q 006803 597 PVLICCEAY 605 (630)
Q Consensus 597 PV~V~aet~ 605 (630)
|+++++...
T Consensus 74 ~ii~~s~~~ 82 (121)
T 2pl1_A 74 PILVLTARE 82 (121)
T ss_dssp CEEEEESCC
T ss_pred CEEEEecCC
Confidence 999987654
No 337
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=27.93 E-value=2.7e+02 Score=25.71 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=56.7
Q ss_pred CCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc-------
Q 006803 494 GDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------- 560 (630)
Q Consensus 494 gdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------- 560 (630)
|.+||..|-++-+ ..+.+...++| .+|+++..|.......+..+|...|-.+.++ .| ..+..++.
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG--CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3467777766644 34444444555 5677754554434445556666656555544 34 23444443
Q ss_pred cccEEEEcceeEecCCc-------------eecccchHHHHHHHHhC----CCcEEEec
Q 006803 561 EVTRVFLGASSVLSNGT-------------TYSRVGTACVAMVAHAF----RVPVLICC 602 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~-------------V~NKiGT~~lAlaAk~~----~VPV~V~a 602 (630)
.+|.||--|-. ...+. -+|-.|++.+.-.+..+ +...+|..
T Consensus 79 ~id~li~~Ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 136 (244)
T 1edo_A 79 TIDVVVNNAGI-TRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINI 136 (244)
T ss_dssp CCSEEEECCCC-CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEECCCC-CCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 57887765532 22221 14667887777666542 45555443
No 338
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=27.91 E-value=2.7e+02 Score=27.62 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=52.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHc--------CCceEEEEcCCCCCchHHHHH-HHHHhC----------CCcEEEEcc--
Q 006803 494 GDVLLTYGSSCVVEMILLYAHEL--------GKQFRVVVVDSRPKHEGQALL-RRLLAK----------GLSCTYTHI-- 552 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~--------gk~f~ViV~ESRP~~eG~~La-~eL~~~----------GI~vTlI~D-- 552 (630)
..+++|-|-+..+..+|..+... ...-+|++.+ |.+.|..+. ..+... ...+..+..
T Consensus 94 ~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (392)
T 3ruy_A 94 EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCE--DNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGD 171 (392)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEET--TCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTC
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEc--CCcCCCCHhhhhccCChhhccccCCCCCCCeeeCccc
Confidence 45667766666666666655433 1123555543 223232222 122111 112444432
Q ss_pred -hhHHHHhc-cccEEEEcceeEecCCceecccc-hHHHHHHHHhCCCcEEEe
Q 006803 553 -NAVSYIMH-EVTRVFLGASSVLSNGTTYSRVG-TACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 553 -sAv~~iM~-~Vd~VivGAdaI~aNG~V~NKiG-T~~lAlaAk~~~VPV~V~ 601 (630)
..+-..+. ++.+|++-. .--..|.+...-. --.|+-+|+.|++.+++=
T Consensus 172 ~~~l~~~l~~~~~~v~~~~-~~nptG~~~~~~~~l~~i~~l~~~~~~~li~D 222 (392)
T 3ruy_A 172 LEALKAAITPNTAAFILEP-IQGEAGINIPPAGFLKEALEVCKKENVLFVAD 222 (392)
T ss_dssp HHHHHHHCCTTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHhccCeEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 23334443 444555532 2223366665655 666888999999988863
No 339
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.88 E-value=1.5e+02 Score=24.52 Aligned_cols=81 Identities=11% Similarity=0.215 Sum_probs=47.8
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHHH--
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH-- 592 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk-- 592 (630)
...+|+|+|..+.. ...|...|.+.|+.+....+..-+. .+. ..|.||+..+ +.+ .-|.-.+..+-+
T Consensus 5 ~~~~iLivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~-----~~g~~~~~~l~~~~ 76 (140)
T 3grc_A 5 PRPRILICEDDPDI-ARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPD-----QDGVSLIRALRRDS 76 (140)
T ss_dssp CCSEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSS-----SCHHHHHHHHHTSG
T ss_pred CCCCEEEEcCCHHH-HHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCC-----CCHHHHHHHHHhCc
Confidence 34678888876654 3334567777888877666533222 222 5788888653 222 224444444443
Q ss_pred -hCCCcEEEeccccc
Q 006803 593 -AFRVPVLICCEAYK 606 (630)
Q Consensus 593 -~~~VPV~V~aet~K 606 (630)
..++||++++....
T Consensus 77 ~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 77 RTRDLAIVVVSANAR 91 (140)
T ss_dssp GGTTCEEEEECTTHH
T ss_pred ccCCCCEEEEecCCC
Confidence 45899999987653
No 340
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=27.87 E-value=84 Score=30.15 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=47.9
Q ss_pred CEEEeecChHHHHHHHH-HHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc--cccEEEEccee
Q 006803 495 DVLLTYGSSCVVEMILL-YAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH--EVTRVFLGASS 571 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~-~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAda 571 (630)
.+||..|-++.+=.-|. .+.++| .+|+++.-+. +-+.....+..++. .+|.||--|-.
T Consensus 13 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~-----------------~Dl~d~~~~~~~~~~~~~d~vih~A~~ 73 (292)
T 1vl0_A 13 MKILITGANGQLGREIQKQLKGKN--VEVIPTDVQD-----------------LDITNVLAVNKFFNEKKPNVVINCAAH 73 (292)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS--EEEEEECTTT-----------------CCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred ceEEEECCCChHHHHHHHHHHhCC--CeEEeccCcc-----------------CCCCCHHHHHHHHHhcCCCEEEECCcc
Confidence 56777777776543333 333333 5677665331 00001123444555 46776654432
Q ss_pred EecC--------CceecccchHHHHHHHHhCCCcEEEecc
Q 006803 572 VLSN--------GTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 572 I~aN--------G~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
...+ -.-+|-.||..+.-+|+.+++.|+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS 113 (292)
T 1vl0_A 74 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQIST 113 (292)
T ss_dssp CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEech
Confidence 1100 0124678899999899888886555543
No 341
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=27.78 E-value=1.7e+02 Score=28.70 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhccCCCEEEeecChH-HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCC--CcEEEEcchhH
Q 006803 480 DKVIVRHAATKVRDGDVLLTYGSSC-VVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKG--LSCTYTHINAV 555 (630)
Q Consensus 480 ~~~Ia~~a~~~I~dgdvILT~g~S~-tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~G--I~vTlI~DsAv 555 (630)
.+.|+..+..++++|.+||=.|++. .....|.... .....+|+-+|-.|.. ...+ +.+...| .+++++...+.
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~-~~~~~~v~gvD~s~~m--l~~A~~~~~~~~~~~~v~~~~~D~~ 133 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNI-HHDNCKIIAIDNSPAM--IERCRRHIDAYKAPTPVDVIEGDIR 133 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTC-CSSSCEEEEEESCHHH--HHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhc-CCCCCEEEEEECCHHH--HHHHHHHHHhhccCceEEEeecccc
Confidence 4567777888999999999998864 3332232211 1246789988876542 2234 3455555 46888875543
Q ss_pred HHHhccccEEE
Q 006803 556 SYIMHEVTRVF 566 (630)
Q Consensus 556 ~~iM~~Vd~Vi 566 (630)
..-....|.|+
T Consensus 134 ~~~~~~~d~v~ 144 (261)
T 4gek_A 134 DIAIENASMVV 144 (261)
T ss_dssp TCCCCSEEEEE
T ss_pred cccccccccce
Confidence 33333445544
No 342
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=27.69 E-value=3.1e+02 Score=27.35 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=52.0
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch-------hHHHH---hc-c
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN-------AVSYI---MH-E 561 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~i---M~-~ 561 (630)
...+++|.|.+..+..++..+...| -+|++.+ |.+.|... .+...|+.+..+... -+..+ +. +
T Consensus 101 ~~~v~~~~g~t~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 174 (389)
T 1o4s_A 101 PDQVVVTNGAKQALFNAFMALLDPG--DEVIVFS--PVWVSYIP--QIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK 174 (389)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT
T ss_pred HHHEEEecCHHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHcCCEEEEEecCCccCCCCCHHHHHHhcccC
Confidence 3467777776666666665543333 3566554 44444333 234578887776532 11222 22 3
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+..|++ ...--..|.++..-=--.|+-+|+.|++.+++
T Consensus 175 ~~~v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 212 (389)
T 1o4s_A 175 TKAVLI-NSPNNPTGVVYRREFLEGLVRLAKKRNFYIIS 212 (389)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 334443 22111234443332234567778899998876
No 343
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=27.64 E-value=1.5e+02 Score=28.47 Aligned_cols=103 Identities=10% Similarity=0.088 Sum_probs=62.0
Q ss_pred CCEEEeecChH--HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEcc------hhHHHHhc--cc
Q 006803 494 GDVLLTYGSSC--VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTHI------NAVSYIMH--EV 562 (630)
Q Consensus 494 gdvILT~g~S~--tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~D------sAv~~iM~--~V 562 (630)
|.+.|+..... -+..+.+...+.=..|++|.+++ .++.|.+ .||+|+.+.- .-+..+|. +|
T Consensus 28 g~V~lsv~D~dK~~lv~~ak~~~~lL~Gf~L~AT~g--------Ta~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~~geI 99 (178)
T 1vmd_A 28 KRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGT--------TGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKI 99 (178)
T ss_dssp CEEEEEECGGGHHHHHHHHHHSHHHHTTSEEEECHH--------HHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSC
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHHhcCCEEEEchH--------HHHHHHHHhCceeEEEeecCCCCCchHHHHHHCCCc
Confidence 44455544333 23333333333212689998865 4577888 8999999842 23556666 69
Q ss_pred cEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccc
Q 006803 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 563 d~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf 607 (630)
|+||-=-|-+ |.-....-.+.|=-+|-.||||++---.+-++
T Consensus 100 dlVInt~dPl---~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~A 141 (178)
T 1vmd_A 100 DVLIFFWDPL---EPQAHDVDVKALIRIATVYNIPVAITRSTADF 141 (178)
T ss_dssp CEEEEECCSS---SCCTTSCCHHHHHHHHHHTTCCEESSHHHHHH
T ss_pred cEEEEccCcc---CCCcccccHHHHHHHHHHcCCCEEeCHHHHHH
Confidence 9998644310 22221344577888899999999875544443
No 344
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=27.62 E-value=2.3e+02 Score=28.70 Aligned_cols=98 Identities=14% Similarity=0.052 Sum_probs=52.1
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHH-HhCCCcEEEEcch---hHHHHhc-cccEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRL-LAKGLSCTYTHIN---AVSYIMH-EVTRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL-~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 568 (630)
+.|++-+-+..+..+|..+...| -+|++.+ |.+.|.... ..+ ...|+.+.++... .+-..+. ++..|++.
T Consensus 82 ~~i~~~sG~~a~~~~l~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 157 (398)
T 1gc0_A 82 AGLALASGMGAITSTLWTLLRPG--DEVLLGN--TLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFE 157 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEES--SCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhcCC--CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 45555444544444444443333 3566654 455554333 333 5679999888632 2333333 34455442
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..--..|.+.. --.|+-+|++|++.++|
T Consensus 158 -~~~nptG~~~~---l~~i~~l~~~~~~~li~ 185 (398)
T 1gc0_A 158 -SPANPNMHMAD---IAGVAKIARKHGATVVV 185 (398)
T ss_dssp -SSCTTTCCCCC---HHHHHHHHGGGTCEEEE
T ss_pred -CCCCCCccccc---HHHHHHHHHHcCCEEEE
Confidence 11112344442 35677889999998876
No 345
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=27.54 E-value=81 Score=29.72 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=43.4
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceec----ccchHHHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYS----RVGTACVAMVAH 592 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~N----KiGT~~lAlaAk 592 (630)
++..+|.|++- +.+- ..+...|.+.|+.+.++.+.. -+..+|.|||+-- +..++. ..+...+-.-+.
T Consensus 18 ~~~~~I~ii~~-~~~~-~~~~~~l~~~g~~~~~~~~~~---~l~~~d~iil~GG----~~~~~~~~~~~~~~~~~i~~~~ 88 (208)
T 2iss_D 18 GSHMKIGVLGV-QGDV-REHVEALHKLGVETLIVKLPE---QLDMVDGLILPGG----ESTTMIRILKEMDMDEKLVERI 88 (208)
T ss_dssp --CCEEEEECS-SSCH-HHHHHHHHHTTCEEEEECSGG---GGGGCSEEEECSS----CHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcEEEEEEC-CCch-HHHHHHHHHCCCEEEEeCChH---HHhhCCEEEECCC----cHHHHHhhhhhhhHHHHHHHHH
Confidence 34567777764 3321 224577888999998887543 2457787776321 001111 112222222233
Q ss_pred hCCCcEEEeccccc
Q 006803 593 AFRVPVLICCEAYK 606 (630)
Q Consensus 593 ~~~VPV~V~aet~K 606 (630)
..++|++-+|--+-
T Consensus 89 ~~g~PilGIC~G~Q 102 (208)
T 2iss_D 89 NNGLPVFATCAGVI 102 (208)
T ss_dssp HTTCCEEEETHHHH
T ss_pred HCCCeEEEECHHHH
Confidence 57999997775443
No 346
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=27.51 E-value=66 Score=26.82 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCC-CcEEEEcchhHHH-Hhc--cccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKG-LSCTYTHINAVSY-IMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTlI~DsAv~~-iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
....+|+|+|..+.. ...+...|.+.| +.|....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+-+
T Consensus 12 ~~~~~ilivdd~~~~-~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~ 83 (135)
T 3snk_A 12 TKRKQVALFSSDPNF-KRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLG--GGDL-----LGKPGIVEARA 83 (135)
T ss_dssp -CCEEEEEECSCHHH-HHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEE--TTGG-----GGSTTHHHHHG
T ss_pred CCCcEEEEEcCCHHH-HHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCC--CCCc-----hHHHHHHHHHh
Confidence 345688888887654 233557788888 8887655533222 122 5788888653 3221 23333333333
Q ss_pred h-CCCcEEEeccccc
Q 006803 593 A-FRVPVLICCEAYK 606 (630)
Q Consensus 593 ~-~~VPV~V~aet~K 606 (630)
. .++|+++++....
T Consensus 84 ~~~~~~ii~~s~~~~ 98 (135)
T 3snk_A 84 LWATVPLIAVSDELT 98 (135)
T ss_dssp GGTTCCEEEEESCCC
T ss_pred hCCCCcEEEEeCCCC
Confidence 3 4899999877543
No 347
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=27.50 E-value=1.1e+02 Score=28.89 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=57.0
Q ss_pred CCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc------
Q 006803 493 DGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------ 560 (630)
Q Consensus 493 dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 560 (630)
.|.+||..|-++-+ ..+.+...++| .+|+++.-+.......+..+|...|..+.++ .| ..+..++.
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 36678888877755 34555555656 5677765533333445667788778777665 34 34444444
Q ss_pred -cccEEEEcceeEecCCc-------------eecccchHHHHHHHHhC
Q 006803 561 -EVTRVFLGASSVLSNGT-------------TYSRVGTACVAMVAHAF 594 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~-------------V~NKiGT~~lAlaAk~~ 594 (630)
.+|.||--|-. ...+. -+|-.|++.+.-.+..+
T Consensus 98 ~~~d~vi~~Ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 144 (274)
T 1ja9_A 98 GGLDFVMSNSGM-EVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKH 144 (274)
T ss_dssp SCEEEEECCCCC-CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCC-CCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776654422 11111 13667888777666543
No 348
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=27.34 E-value=3.5e+02 Score=25.81 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=60.9
Q ss_pred cCCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc-----
Q 006803 492 RDGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH----- 560 (630)
Q Consensus 492 ~dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~----- 560 (630)
.++.+||..|-++-+ ..+.+...++| .+|+++..|.......+..+|.+.|-.+.++ +| ..+..++.
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQG--WRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 356778877776654 44445555555 5677776666555566678888888777665 33 23333433
Q ss_pred --cccEEEEcceeEecCCc-------------eecccchHHHHHHHHh
Q 006803 561 --EVTRVFLGASSVLSNGT-------------TYSRVGTACVAMVAHA 593 (630)
Q Consensus 561 --~Vd~VivGAdaI~aNG~-------------V~NKiGT~~lAlaAk~ 593 (630)
.+|.||--|-.....+. -+|-.|++.+.-.+..
T Consensus 102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 149 (272)
T 4e3z_A 102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVR 149 (272)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57888877643322231 1467788777655543
No 349
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=27.29 E-value=3.4e+02 Score=27.54 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=51.1
Q ss_pred ccCCCEEEeecChHHH-HHHHHHHHHcC----C-------ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc------
Q 006803 491 VRDGDVLLTYGSSCVV-EMILLYAHELG----K-------QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI------ 552 (630)
Q Consensus 491 I~dgdvILT~g~S~tV-~~vL~~A~e~g----k-------~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D------ 552 (630)
+....+++|.|.+..+ ..++..+...+ + .-+|++. .|.+.+...+.+ ..|+.+..+..
T Consensus 91 ~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~--~p~y~~~~~~~~--~~g~~~~~v~~~~~g~d 166 (422)
T 3d6k_A 91 LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCP--VPGYDRHFTITE--HFGFEMINVPMTDEGPD 166 (422)
T ss_dssp CCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEE--ESCCHHHHHHHH--HHTCEEEEEEEETTEEC
T ss_pred CChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEe--CCccHHHHHHHH--HcCCEEEecCCCCCCCC
Confidence 3445688888887665 25554444332 1 2245554 366766654433 34777666542
Q ss_pred -hhHHHHhc--cccEEEEcceeEecCCceecccchH-------HHHHHHH-hCCCcEEE
Q 006803 553 -NAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVAH-AFRVPVLI 600 (630)
Q Consensus 553 -sAv~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaAk-~~~VPV~V 600 (630)
..+-..+. ++..|++=+ ..-|..|+. .++-+|+ +|++.|++
T Consensus 167 ~~~l~~~l~~~~~~~v~~~~-------~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~ 218 (422)
T 3d6k_A 167 MGVVRELVKDPQVKGMWTVP-------VFGNPTGVTFSEQTCRELAEMSTAAPDFRIVW 218 (422)
T ss_dssp HHHHHHHHTSTTEEEEEECC-------SSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEE
T ss_pred HHHHHHHHhcCCCeEEEEcC-------CCCCCCCCCCCHHHHHHHHHHHhhccCCEEEE
Confidence 22333333 233333111 234555543 5666777 88987655
No 350
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=27.24 E-value=1.1e+02 Score=30.33 Aligned_cols=108 Identities=11% Similarity=0.073 Sum_probs=54.8
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHh----CCCcEEEE-cc----hhHHHHhcc--c
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA----KGLSCTYT-HI----NAVSYIMHE--V 562 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~----~GI~vTlI-~D----sAv~~iM~~--V 562 (630)
.+||..|-++-+= .+++.+.++| .+|+++.-++......-...|.. .+-.++++ .| ..+..++.. +
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEKG--YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 4688888777654 4444555555 57887765443211111122211 12234433 22 345556664 6
Q ss_pred cEEEEcceeEecCCc--------eecccchHHHHHHHHhCCC---cEEEeccc
Q 006803 563 TRVFLGASSVLSNGT--------TYSRVGTACVAMVAHAFRV---PVLICCEA 604 (630)
Q Consensus 563 d~VivGAdaI~aNG~--------V~NKiGT~~lAlaAk~~~V---PV~V~aet 604 (630)
|.||--|-....+.. -+|-.||..+.-+|+.+++ .-+|.+.+
T Consensus 80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS 132 (372)
T 1db3_A 80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAST 132 (372)
T ss_dssp SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence 888765543221111 2466799999999999987 45554443
No 351
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=27.10 E-value=4.3e+02 Score=27.96 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=53.7
Q ss_pred CCCEEEeecChHHHHHHHHHHH--------HcCC----ceEEEEcCC-CCCchHHHHHHHHHhCCC-cEEEEcc------
Q 006803 493 DGDVLLTYGSSCVVEMILLYAH--------ELGK----QFRVVVVDS-RPKHEGQALLRRLLAKGL-SCTYTHI------ 552 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~--------e~gk----~f~ViV~ES-RP~~eG~~La~eL~~~GI-~vTlI~D------ 552 (630)
.+..++|-|-|..++..|..+. +.|. +..|++.+. .+.. .-+..+...|. .+..|..
T Consensus 165 ~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~---~~~~~~~g~g~~~v~~v~~~~~~~~ 241 (515)
T 2jis_A 165 SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSI---QKGAAFLGLGTDSVRVVKADERGKM 241 (515)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH---HHHHHHTTSCGGGEEEECBCTTSCB
T ss_pred CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHH---HHHHHHcCCCCCcEEEEecCCCCcC
Confidence 4567888777766555555553 1352 457777763 3322 22222323333 7777752
Q ss_pred --hhHHHHhcc------ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 553 --NAVSYIMHE------VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 553 --sAv~~iM~~------Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.++-..+.+ ..++|+....-...|.+. . --.|+-+|+.||+.|+|=
T Consensus 242 d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~-~--l~~I~~la~~~g~~l~vD 295 (515)
T 2jis_A 242 VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD-P--LEAIADVCQRHGLWLHVD 295 (515)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-C--HHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc-C--HHHHHHHHHHcCCeEEEe
Confidence 223333332 133444332212234443 3 246788899999999884
No 352
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.04 E-value=2.1e+02 Score=23.29 Aligned_cols=79 Identities=13% Similarity=0.235 Sum_probs=45.9
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCC--cEEEEcc--hhHHHHh--------ccccEEEEcceeEecCCceecccchHH
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGL--SCTYTHI--NAVSYIM--------HEVTRVFLGASSVLSNGTTYSRVGTAC 586 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI~D--sAv~~iM--------~~Vd~VivGAdaI~aNG~V~NKiGT~~ 586 (630)
..+|+|+|..+.. ...|...|...|. .+....+ .+..++- ...|.||+..+- .+ .-|--.
T Consensus 2 ~~~ilivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~-----~~g~~~ 73 (140)
T 1k68_A 2 HKKIFLVEDNKAD-IRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PK-----KDGREV 73 (140)
T ss_dssp CCEEEEECCCHHH-HHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SS-----SCHHHH
T ss_pred CCeEEEEeCCHHH-HHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--Cc-----ccHHHH
Confidence 3567788776543 3345577778887 5555544 2333443 257888886542 21 224444
Q ss_pred HHHHHHh---CCCcEEEecccc
Q 006803 587 VAMVAHA---FRVPVLICCEAY 605 (630)
Q Consensus 587 lAlaAk~---~~VPV~V~aet~ 605 (630)
+..+-+. .++|+++++...
T Consensus 74 ~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEESCC
T ss_pred HHHHHcCcccccccEEEEecCC
Confidence 4444444 479999987654
No 353
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=26.95 E-value=3.1e+02 Score=27.55 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=54.3
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---------hhHHHHhc-----
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---------NAVSYIMH----- 560 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------sAv~~iM~----- 560 (630)
.+++|.|-+..+..++....+.| -+|++.+ |.+.+.... +...|+.+..+.- ..+-..+.
T Consensus 104 ~i~~t~g~~~al~~~~~~l~~~g--d~Vl~~~--p~~~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 104 RSIATAGGTGGIHHLIHNYTEPG--DEVLTAD--WYWGAYRVI--CSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAK 177 (418)
T ss_dssp EEEEESHHHHHHHHHHHHHSCTT--CEEEEES--SCCTHHHHH--HHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHH
T ss_pred cEEECCchHHHHHHHHHHhcCCC--CEEEECC--CCchhHHHH--HHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhcc
Confidence 56677666666555555443333 4566655 666665433 4457888777752 12222333
Q ss_pred cccEEEEccee-EecCCceecccchHHHHHHHH------hCCCcEEE
Q 006803 561 EVTRVFLGASS-VLSNGTTYSRVGTACVAMVAH------AFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAda-I~aNG~V~NKiGT~~lAlaAk------~~~VPV~V 600 (630)
+..++++=..- --..|.++..---..++-+|+ .|++.+++
T Consensus 178 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 224 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGI 224 (418)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 23323332222 244576666666666777777 78876665
No 354
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=26.90 E-value=3.9e+02 Score=24.90 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=61.0
Q ss_pred CCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc------
Q 006803 493 DGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------ 560 (630)
Q Consensus 493 dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 560 (630)
.|.+||..|-++-+ ..+.+...++| .+|++++-++ .....+..+|...|..+.++ .| ..+..++.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAG--ARVIIADLDE-AMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46778888777755 34555555555 5788776443 22344567777777777665 33 23334443
Q ss_pred -cccEEEEcceeEecCCc-------------eecccchHHHHHHHHh----CCCcEEEec
Q 006803 561 -EVTRVFLGASSVLSNGT-------------TYSRVGTACVAMVAHA----FRVPVLICC 602 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~-------------V~NKiGT~~lAlaAk~----~~VPV~V~a 602 (630)
.+|.||--|-.....+. -+|-.|++.+.-.+.. .+...+|..
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ 148 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAI 148 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 57888876643221221 1467788777765543 244555543
No 355
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=26.89 E-value=2.2e+02 Score=28.18 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 551 (630)
..+++|.|.+..+..++....+.|+ -+|++. .|.+.|...+.+ ..|+.+..+.
T Consensus 76 ~~v~~~~G~~~ai~~~~~~~~~~g~-d~Vl~~--~p~~~~~~~~~~--~~g~~~~~v~ 128 (356)
T 1fg7_A 76 EQVLVSRGADEGIELLIRAFCEPGK-DAILYC--PPTYGMYSVSAE--TIGVECRTVP 128 (356)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTT-CEEEEC--SSSCTHHHHHHH--HHTCEEEECC
T ss_pred HHEEEcCCHHHHHHHHHHHHhCCCC-CEEEEe--CCChHHHHHHHH--HcCCEEEEee
Confidence 4577777766665555554433331 356665 477777655433 3577766654
No 356
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Probab=26.86 E-value=1.4e+02 Score=29.56 Aligned_cols=106 Identities=13% Similarity=0.157 Sum_probs=58.1
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhc-----cccEEEE
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMH-----EVTRVFL 567 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~-----~Vd~Viv 567 (630)
+.+||..|-++.+= .++..+.++|. .+|+++...+.... ...|....+.+-+-....+..++. .+|.||-
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih 121 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTK---FVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFH 121 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTC-CCEEEEECCSSGGG---GGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-cEEEEEecCCCcch---hhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEE
Confidence 45788888888664 44444555551 45666654433210 111222225555544455666666 4888876
Q ss_pred cceeEecC-Cc-----eecccchHHHHHHHHhCCCcEEEecc
Q 006803 568 GASSVLSN-GT-----TYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 568 GAdaI~aN-G~-----V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
-|-..... .+ -+|-.||..+.-+|+..++.|+.+..
T Consensus 122 ~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS 163 (357)
T 2x6t_A 122 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 163 (357)
T ss_dssp CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 55322211 01 14677999999999888885555443
No 357
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=26.83 E-value=67 Score=31.43 Aligned_cols=108 Identities=12% Similarity=0.061 Sum_probs=58.7
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhcc--ccEE
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMHE--VTRV 565 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~--Vd~V 565 (630)
|.+||..|-++-+= .+...+.++| .+|+++.-++...-......+.. +-.++++ .| ..+..++.. +|.|
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 79 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKG--YEVYGADRRSGEFASWRLKELGI-ENDVKIIHMDLLEFSNIIRTIEKVQPDEV 79 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECSCCSTTTTHHHHHTTC-TTTEEECCCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEECCCcccccccHhhccc-cCceeEEECCCCCHHHHHHHHHhcCCCEE
Confidence 56788888888664 4444455555 57887765443211111122211 1234443 23 345556664 5888
Q ss_pred EEcceeEecC---Cc-----eecccchHHHHHHHHhCCC-cEEEeccc
Q 006803 566 FLGASSVLSN---GT-----TYSRVGTACVAMVAHAFRV-PVLICCEA 604 (630)
Q Consensus 566 ivGAdaI~aN---G~-----V~NKiGT~~lAlaAk~~~V-PV~V~aet 604 (630)
|--|-....+ .+ -+|-.||..+.-+|+.+++ .-+|.+.+
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 127 (345)
T 2z1m_A 80 YNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAST 127 (345)
T ss_dssp EECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred EECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEec
Confidence 7765432110 01 2477899999988888886 44544433
No 358
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=26.75 E-value=1.3e+02 Score=27.95 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=54.3
Q ss_pred CCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEE
Q 006803 493 DGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFL 567 (630)
Q Consensus 493 dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~Viv 567 (630)
.+.+||..|-++-+ ..+.+.+.++|...+|+++.-++.... .+...++.+ +..| ..+..++..+|.||-
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~-----~~~~~~~~~-~~~D~~d~~~~~~~~~~~d~vi~ 90 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD-----EEAYKNVNQ-EVVDFEKLDDYASAFQGHDVGFC 90 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC-----SGGGGGCEE-EECCGGGGGGGGGGGSSCSEEEE
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcc-----ccccCCceE-EecCcCCHHHHHHHhcCCCEEEE
Confidence 36788888877755 445555556665226777654443110 011123322 2334 234444555666555
Q ss_pred cceeEecCC-----ceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 568 GASSVLSNG-----TTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 568 GAdaI~aNG-----~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
-|-...... .-+|-.|+..+.-+++..++.-+|...+
T Consensus 91 ~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS 132 (242)
T 2bka_A 91 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS 132 (242)
T ss_dssp CCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEcc
Confidence 432110000 0135678888888888888766655444
No 359
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=26.65 E-value=1.1e+02 Score=30.73 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=60.1
Q ss_pred hhccCCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchH---------------H-HHHH--HHHhCCCcEEE
Q 006803 489 TKVRDGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEG---------------Q-ALLR--RLLAKGLSCTY 549 (630)
Q Consensus 489 ~~I~dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG---------------~-~La~--eL~~~GI~vTl 549 (630)
.+.+++..||..|-++.+= .++..+.++| .+|++++-.+.... . .+.. .+...++.+.
T Consensus 6 ~~~~~~~~vlVTG~tGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~- 82 (404)
T 1i24_A 6 HHHHHGSRVMVIGGDGYCGWATALHLSKKN--YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELY- 82 (404)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEE-
T ss_pred ccccCCCeEEEeCCCcHHHHHHHHHHHhCC--CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEE-
Confidence 3556789999999999764 3444455555 57777764322111 0 1111 1223344332
Q ss_pred Ecc----hhHHHHhcc--ccEEEEcceeEecC---Cc--------eecccchHHHHHHHHhCCCc-EEEeccc
Q 006803 550 THI----NAVSYIMHE--VTRVFLGASSVLSN---GT--------TYSRVGTACVAMVAHAFRVP-VLICCEA 604 (630)
Q Consensus 550 I~D----sAv~~iM~~--Vd~VivGAdaI~aN---G~--------V~NKiGT~~lAlaAk~~~VP-V~V~aet 604 (630)
..| ..+..++.. +|.||--|-..... .+ -+|-.||..+.-+|+.+++. -+|.+.+
T Consensus 83 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS 155 (404)
T 1i24_A 83 VGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT 155 (404)
T ss_dssp ESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred ECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 233 345566766 88888766322100 01 24788999999999888863 4444444
No 360
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Probab=26.56 E-value=1.7e+02 Score=27.94 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=57.2
Q ss_pred EEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhcc-----ccEEEEcce
Q 006803 497 LLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHE-----VTRVFLGAS 570 (630)
Q Consensus 497 ILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~-----Vd~VivGAd 570 (630)
||..|-++.+= .++..+.++|. .+|+++...+...- ...|....+.+.+-....+..++.. +|.||--|-
T Consensus 2 vlVtGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~ 77 (310)
T 1eq2_A 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTK---FVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA 77 (310)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGG---GHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred EEEEcCccHHHHHHHHHHHHCCC-cEEEEEccCCCCch---hhhcCcceeccccccHHHHHHHHhccccCCCcEEEECcc
Confidence 67778777664 44444555551 46666654443211 1122222255555444566667764 888876553
Q ss_pred eEecC-Cc-----eecccchHHHHHHHHhCCCcEEEecc
Q 006803 571 SVLSN-GT-----TYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 571 aI~aN-G~-----V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
..... .+ -+|-.||..+.-+|+.+++.|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 116 (310)
T 1eq2_A 78 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116 (310)
T ss_dssp CCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cccCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 22110 11 14667899999999988885555443
No 361
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=26.38 E-value=1.2e+02 Score=25.10 Aligned_cols=81 Identities=10% Similarity=0.074 Sum_probs=47.2
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHh-CCCc-EEEEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLA-KGLS-CTYTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~-~GI~-vTlI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
...+|+|+|..+.. ...+...|.. .|+. +....+.. +..+-. ..|.||+..+- .+ .-|.-.+..+-+
T Consensus 7 ~~~~iLivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~ 78 (143)
T 3cnb_A 7 NDFSILIIEDDKEF-ADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VG-----MDGFSICHRIKS 78 (143)
T ss_dssp --CEEEEECSCHHH-HHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TT-----SCHHHHHHHHHT
T ss_pred CCceEEEEECCHHH-HHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CC-----CcHHHHHHHHHh
Confidence 45788888887654 3345577777 8998 66665532 222222 57888887543 11 224333444443
Q ss_pred ---hCCCcEEEeccccc
Q 006803 593 ---AFRVPVLICCEAYK 606 (630)
Q Consensus 593 ---~~~VPV~V~aet~K 606 (630)
..++|+++++....
T Consensus 79 ~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 79 TPATANIIVIAMTGALT 95 (143)
T ss_dssp STTTTTSEEEEEESSCC
T ss_pred CccccCCcEEEEeCCCC
Confidence 35799999876543
No 362
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=26.32 E-value=1.8e+02 Score=30.11 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=42.0
Q ss_pred EEEEcCCCCCchHHH-HH-HH-HHhCCCcEEEEcchh---HHHHhc-cccEEEEcceeEe-cCCceecccchHHHHHHHH
Q 006803 521 RVVVVDSRPKHEGQA-LL-RR-LLAKGLSCTYTHINA---VSYIMH-EVTRVFLGASSVL-SNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~-La-~e-L~~~GI~vTlI~DsA---v~~iM~-~Vd~VivGAdaI~-aNG~V~NKiGT~~lAlaAk 592 (630)
+|++.+ |.+.|.. +. .. +...|+.++++...- +-..+. ++.+|++ +.+. ..|.+.. --.|+-+|+
T Consensus 107 ~Vi~~~--~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~--e~~~np~G~~~~---l~~i~~la~ 179 (400)
T 3nmy_A 107 HVVAMD--DLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWI--ETPTNPMLKLVD---IAAIAVIAR 179 (400)
T ss_dssp EEEEES--SCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEE--ESSCTTTCCCCC---HHHHHHHHH
T ss_pred EEEEeC--CCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEE--ECCCCCCCeeec---HHHHHHHHH
Confidence 566543 5555443 23 23 566799999886433 333333 3444444 2232 2344443 456788899
Q ss_pred hCCCcEEE
Q 006803 593 AFRVPVLI 600 (630)
Q Consensus 593 ~~~VPV~V 600 (630)
+||++++|
T Consensus 180 ~~g~~liv 187 (400)
T 3nmy_A 180 KHGLLTVV 187 (400)
T ss_dssp HTTCEEEE
T ss_pred HcCCEEEE
Confidence 99998887
No 363
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=26.32 E-value=2e+02 Score=23.27 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=46.1
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--hHHHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHh-
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--AVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA- 593 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--Av~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~- 593 (630)
..+|+|+|..+.. ...+...|...|+.+....+. ++..+-. ..|.||+..+ +.+| .-|--.+..+-+.
T Consensus 5 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~--l~~~----~~g~~~~~~l~~~~ 77 (132)
T 2rdm_A 5 AVTILLADDEAIL-LLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIR--FCQP----PDGWQVARVAREID 77 (132)
T ss_dssp SCEEEEECSSHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESC--CSSS----SCHHHHHHHHHHHC
T ss_pred CceEEEEcCcHHH-HHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeee--CCCC----CCHHHHHHHHHhcC
Confidence 4678888876643 334556777788887766543 2333322 4788888654 2221 1233333333333
Q ss_pred CCCcEEEecccc
Q 006803 594 FRVPVLICCEAY 605 (630)
Q Consensus 594 ~~VPV~V~aet~ 605 (630)
.++|+++++...
T Consensus 78 ~~~~ii~~s~~~ 89 (132)
T 2rdm_A 78 PNMPIVYISGHA 89 (132)
T ss_dssp TTCCEEEEESSC
T ss_pred CCCCEEEEeCCc
Confidence 479999987654
No 364
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=26.29 E-value=3.6e+02 Score=27.27 Aligned_cols=99 Identities=14% Similarity=0.024 Sum_probs=53.5
Q ss_pred ccCCCEEEeecChHHHH--HHHHHHHH--cC--------CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc------
Q 006803 491 VRDGDVLLTYGSSCVVE--MILLYAHE--LG--------KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI------ 552 (630)
Q Consensus 491 I~dgdvILT~g~S~tV~--~vL~~A~e--~g--------k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D------ 552 (630)
+....+|+|-|.+..+. .++..... .| ..-+|+|.+ |.+.+... .+...|+.+..+..
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~--p~y~~~~~--~~~~~g~~~~~v~~~~~g~d 168 (427)
T 3ppl_A 93 VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPV--PGYDRHFS--ITERFGFEMISVPMNEDGPD 168 (427)
T ss_dssp SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEE--SCCHHHHH--HHHHTTCEEEEEEEETTEEC
T ss_pred CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcC--CCcHHHHH--HHHHcCCEEEEeCCCCCCCC
Confidence 34457888888887763 33333333 21 133566543 66666543 34456887776642
Q ss_pred -hhHHHHhc--cccEEEEcceeEecCCceecccchH-------HHHHHH-HhCCCcEEE
Q 006803 553 -NAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTA-------CVAMVA-HAFRVPVLI 600 (630)
Q Consensus 553 -sAv~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~-------~lAlaA-k~~~VPV~V 600 (630)
..+-..+. ++.. |+-+...-|..|+. .|+-+| +.|++.|++
T Consensus 169 ~~~l~~~l~~~~~~~-------v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~ 220 (427)
T 3ppl_A 169 MDAVEELVKNPQVKG-------MWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVW 220 (427)
T ss_dssp HHHHHHHTTSTTEEE-------EEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEE
T ss_pred HHHHHHHHhcCCCeE-------EEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEE
Confidence 23333332 2222 33344445666653 566666 889987665
No 365
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=26.26 E-value=1.2e+02 Score=25.27 Aligned_cols=80 Identities=10% Similarity=0.137 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCC--cEEEEcch--hHHHHh-------ccccEEEEcceeEecCCceecccchHH
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGL--SCTYTHIN--AVSYIM-------HEVTRVFLGASSVLSNGTTYSRVGTAC 586 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI~Ds--Av~~iM-------~~Vd~VivGAdaI~aNG~V~NKiGT~~ 586 (630)
+.++|+|+|..+.. ...+...|...|. .+....+. ++.++- ...|.||+..+- .+ .-|.-.
T Consensus 6 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l--~~-----~~g~~~ 77 (143)
T 2qvg_A 6 DKVDILYLEDDEVD-IQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI--PK-----MNGIEF 77 (143)
T ss_dssp -CCSEEEECCCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC--TT-----SCHHHH
T ss_pred CCCeEEEEeCCHHH-HHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC--CC-----CCHHHH
Confidence 44677888876643 3345566777777 66666553 333333 247888887542 11 224334
Q ss_pred HHHHHHh---CCCcEEEecccc
Q 006803 587 VAMVAHA---FRVPVLICCEAY 605 (630)
Q Consensus 587 lAlaAk~---~~VPV~V~aet~ 605 (630)
+..+.+. .++|+++++...
T Consensus 78 ~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 78 LKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp HHHHTTSGGGTTCEEEEEESCC
T ss_pred HHHHHcCccccCCcEEEEeCCC
Confidence 4444443 479999987654
No 366
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=26.23 E-value=56 Score=32.05 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=58.1
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhcc--ccEE
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMHE--VTRV 565 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~--Vd~V 565 (630)
+.+||..|-++.+= .++..+.++| .+|+++.-++..........|. .+-.++++ .| ..+..++.. +|.|
T Consensus 14 ~~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V 90 (335)
T 1rpn_A 14 TRSALVTGITGQDGAYLAKLLLEKG--YRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKAQPQEV 90 (335)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC--CeEEEEeCCCccccccchhhcc-ccCceEEEECCCCCHHHHHHHHHHcCCCEE
Confidence 57899999888664 3444455555 5777776544321111112221 11223333 33 345556664 5888
Q ss_pred EEcceeEecC---Cc-----eecccchHHHHHHHHhCCC-cEEEeccc
Q 006803 566 FLGASSVLSN---GT-----TYSRVGTACVAMVAHAFRV-PVLICCEA 604 (630)
Q Consensus 566 ivGAdaI~aN---G~-----V~NKiGT~~lAlaAk~~~V-PV~V~aet 604 (630)
|--|-..... .+ -+|-.||..+.-+|+.+++ .-+|.+.+
T Consensus 91 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS 138 (335)
T 1rpn_A 91 YNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAST 138 (335)
T ss_dssp EECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 7655322110 01 2466799999989988886 55555444
No 367
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=26.22 E-value=1.5e+02 Score=27.56 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=33.8
Q ss_pred EEEeecChHHHHHHHHHHHHcC-CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006803 496 VLLTYGSSCVVEMILLYAHELG-KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~g-k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 551 (630)
+|.||.....+...|....++. ..++|||+|....-+-..+++++.. .-.++++.
T Consensus 6 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~~i~~i~ 61 (255)
T 1qg8_A 6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN-DNRVRFYQ 61 (255)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG-STTEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh-cCCEEEEe
Confidence 4566766777777777766543 4678887776555444455555544 45566664
No 368
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=26.22 E-value=2.6e+02 Score=28.10 Aligned_cols=103 Identities=10% Similarity=-0.037 Sum_probs=60.3
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEc
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivG 568 (630)
+.+||..|-++.+= .++..+.++| .+|+++.-++... ..+...++.+. ..| ..+..++..+|.||--
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~-----~~~~~~~v~~~-~~Dl~d~~~~~~~~~~~d~Vih~ 100 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEG--HYVIASDWKKNEH-----MTEDMFCDEFH-LVDLRVMENCLKVTEGVDHVFNL 100 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCCSS-----SCGGGTCSEEE-ECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCeEEEECCccHHHHHHHHHHHHCC--CeEEEEECCCccc-----hhhccCCceEE-ECCCCCHHHHHHHhCCCCEEEEC
Confidence 46899999888664 4444555555 5677665443211 01122345432 233 3456677788888876
Q ss_pred ceeEec----CCc-----eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 569 ASSVLS----NGT-----TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 569 AdaI~a----NG~-----V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|-.... ..+ -+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 101 A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS 145 (379)
T 2c5a_A 101 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS 145 (379)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred ceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 543211 000 147779999999999999866665544
No 369
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=26.10 E-value=1.8e+02 Score=30.33 Aligned_cols=102 Identities=15% Similarity=0.249 Sum_probs=54.6
Q ss_pred CCCEEEeecChHHHHHHHHHHHH-----cCC-ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh---------HHH
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHE-----LGK-QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA---------VSY 557 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e-----~gk-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---------v~~ 557 (630)
...+++|.|-+..+..++..+.+ .|. .-+|++. +|.+.+.. ..+...|+.+..|.... +-.
T Consensus 126 ~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~--~~~h~~~~--~~~~~~G~~~~~v~~~~~~~~~d~~~l~~ 201 (497)
T 3mc6_A 126 TGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAP--VTAHAGFD--KAAYYFGMKLRHVELDPTTYQVDLGKVKK 201 (497)
T ss_dssp TCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEE--TTSCHHHH--HHHHHSCCEEEEECBCTTTCSBCTTTTGG
T ss_pred CCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEe--CCccHHHH--HHHHHcCCeEEEEecCcccCcCCHHHHHH
Confidence 34678887777766666665543 231 1256654 35554433 33444698888875322 112
Q ss_pred HhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 558 IMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 558 iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+.+-.++|+...--...|.+.. + -.|+-+|+.||++++|=
T Consensus 202 ~i~~~~~~v~~~~p~nptG~~~~-l--~~i~~la~~~g~~livD 242 (497)
T 3mc6_A 202 FINKNTVLLVGSAPNFPHGIADD-I--EGLGKIAQKYKLPLHVD 242 (497)
T ss_dssp GCCSSEEEEEEETTCTTTCCCCS-C--TTTTTHHHHTTCCEEEE
T ss_pred HHhhCCEEEEEECCCCCCCcCCC-H--HHHHHHHHHhCCEEEEE
Confidence 22222344443322223454433 2 24677889999999983
No 370
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=26.06 E-value=1.7e+02 Score=24.36 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=40.0
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcC-CCCCchHHHHHHHHHh-C--CCcEEEEcc
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVD-SRPKHEGQALLRRLLA-K--GLSCTYTHI 552 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~E-SRP~~eG~~La~eL~~-~--GI~vTlI~D 552 (630)
.|.+..+...+...+......+..+.++++| .-|...|..+++.|.+ . .+++.+++.
T Consensus 29 ~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~ 89 (133)
T 2r25_B 29 NIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTA 89 (133)
T ss_dssp CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEES
T ss_pred eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEEC
Confidence 4666666666666666554445668888887 4588899999988875 2 467776654
No 371
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=26.03 E-value=47 Score=33.31 Aligned_cols=104 Identities=10% Similarity=0.040 Sum_probs=57.9
Q ss_pred CCEEEeecChHHHHHHHH-HHHHcCCceEEEEcCCCCCchHHHHHHHHH-hCCCcEEEEc---c-hhHHHHhccccEEEE
Q 006803 494 GDVLLTYGSSCVVEMILL-YAHELGKQFRVVVVDSRPKHEGQALLRRLL-AKGLSCTYTH---I-NAVSYIMHEVTRVFL 567 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~-~A~e~gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI~---D-sAv~~iM~~Vd~Viv 567 (630)
+.+||..|-++.+=.-|. .+.++ ..++|+++.-++... ..|. ..++.+.... | ..+..++..+|.||-
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~-----~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih 97 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILET-TDWEVFGMDMQTDRL-----GDLVKHERMHFFEGDITINKEWVEYHVKKCDVILP 97 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHH-SSCEEEEEESCCTTT-----GGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCCEEEEEeCChhhh-----hhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence 468999998887654443 34444 135777776544221 1111 2344333221 2 245556778888886
Q ss_pred cceeEecCCc--------eecccchHHHHHHHHhCCCcEEEecc
Q 006803 568 GASSVLSNGT--------TYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 568 GAdaI~aNG~--------V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
-|-....... -+|-.||..+.-+|+.++..|+.+..
T Consensus 98 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS 141 (372)
T 3slg_A 98 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST 141 (372)
T ss_dssp CBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECC
T ss_pred cCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCc
Confidence 4432211110 24678999999999888855554443
No 372
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=26.02 E-value=1.6e+02 Score=24.99 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=39.7
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhC-CC-cEEEEcch--hHHHHh--ccccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAK-GL-SCTYTHIN--AVSYIM--HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~-GI-~vTlI~Ds--Av~~iM--~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
.++|+|+|..+.. ...|...|... |. .+....+. ++..+- ...|.||+..+-- + .-|.-.+..+-+
T Consensus 3 ~~~iLivdd~~~~-~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~--~-----~~g~~~~~~l~~ 74 (154)
T 2qsj_A 3 LTVVLIVDDHHLI-RAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLP--D-----AEAIDGLVRLKR 74 (154)
T ss_dssp CEEEEEECSCHHH-HHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------------CHHHHHHHHH
T ss_pred ccEEEEEcCCHHH-HHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCC--C-----CchHHHHHHHHH
Confidence 4678888876543 33345666666 77 34444432 223332 2478888876532 2 124434444444
Q ss_pred h-CCCcEEEecccc
Q 006803 593 A-FRVPVLICCEAY 605 (630)
Q Consensus 593 ~-~~VPV~V~aet~ 605 (630)
. .++|+++++...
T Consensus 75 ~~~~~~ii~ls~~~ 88 (154)
T 2qsj_A 75 FDPSNAVALISGET 88 (154)
T ss_dssp HCTTSEEEEC----
T ss_pred hCCCCeEEEEeCCC
Confidence 3 479999987654
No 373
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=25.99 E-value=4.5e+02 Score=25.34 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=51.1
Q ss_pred CEEEeecChHHHHHHHHHHH----HcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcch--------hHHHHhcc
Q 006803 495 DVLLTYGSSCVVEMILLYAH----ELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHIN--------AVSYIMHE 561 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~----e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~~ 561 (630)
.+++|.|.+..+..++..+. +.| -+|++.+ |.+.+...+ ..+...|+.+.++... .+-..+..
T Consensus 62 ~i~~~~g~~~a~~~~~~~~~~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4hvk_A 62 TVVFTSGATEANNLAIIGYAMRNARKG--KHILVSA--VEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGC--CEEEEET--TCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred eEEEECCchHHHHHHHHHhhhhhcCCC--CEEEECC--CCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc
Confidence 46666665555554544433 333 3566653 334444333 4456689998888632 23333332
Q ss_pred ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
=.++|+-...--..|.+.. --.|+-+|+.|++ |+|
T Consensus 138 ~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~ 172 (382)
T 4hvk_A 138 DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHI 172 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEE
T ss_pred CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEE
Confidence 2234333332233454433 3467778899999 655
No 374
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=25.98 E-value=2.2e+02 Score=28.90 Aligned_cols=100 Identities=5% Similarity=-0.090 Sum_probs=57.8
Q ss_pred CEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE--Ecc-hhHHHHhccccEEEEcce
Q 006803 495 DVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY--THI-NAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 495 dvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl--I~D-sAv~~iM~~Vd~VivGAd 570 (630)
..|+..|-++-| ..++..+.++|.-.+|+++|-.+. +| .+..|.+...+..+ +.+ ......+..+|.||+-|-
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~--~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PG--VTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HH--HHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-Hh--HHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 468888844432 222233334554456777876554 44 34567665544333 222 244556889999999876
Q ss_pred eEecCCc------eecccchHHHHHHHHhCCCc
Q 006803 571 SVLSNGT------TYSRVGTACVAMVAHAFRVP 597 (630)
Q Consensus 571 aI~aNG~------V~NKiGT~~lAlaAk~~~VP 597 (630)
.-...|. -.|--++..++-.+..++..
T Consensus 86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~ 118 (326)
T 1smk_A 86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPR 118 (326)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5444442 24556788888777776543
No 375
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=25.90 E-value=1.4e+02 Score=31.69 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=52.2
Q ss_pred eecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHH-HHH--------HHHHhCCCcEEEEcc-------hhHHHHhc--
Q 006803 499 TYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQ-ALL--------RRLLAKGLSCTYTHI-------NAVSYIMH-- 560 (630)
Q Consensus 499 T~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~-~La--------~eL~~~GI~vTlI~D-------sAv~~iM~-- 560 (630)
|.+-+..+..+|.... +..-+|++.+ .|.+.|. .+. ..|...|+.+..+.. ..+-..+.
T Consensus 98 ~~sGt~A~~~al~all--~pGD~Vl~~~-~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~ 174 (427)
T 3hvy_A 98 FVNGTHAIGAALFGNL--RPNDTMMSIC-GMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD 174 (427)
T ss_dssp CCSHHHHHHHHHHHTC--CTTCEEEECS-SSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhc--CCCCEEEEeC-CCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC
Confidence 4443433333443332 2334666666 3445444 343 345667998887643 34444443
Q ss_pred -cccEEEEcceeEecCCceecccch----HHHHHHHHh--CCCcEEEe
Q 006803 561 -EVTRVFLGASSVLSNGTTYSRVGT----ACVAMVAHA--FRVPVLIC 601 (630)
Q Consensus 561 -~Vd~VivGAdaI~aNG~V~NKiGT----~~lAlaAk~--~~VPV~V~ 601 (630)
+..+|++.... |...|..|+ -.++-+|+. |++.++|=
T Consensus 175 ~~tklV~i~~s~----gyp~nptg~v~dl~~i~~ia~~~~~g~~livD 218 (427)
T 3hvy_A 175 DSIKLIHIQRST----GYGWRKSLRIAEIAEIIKSIREVNENVIVFVD 218 (427)
T ss_dssp TTEEEEEEESSC----CSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CCCEEEEEECCC----CCCCCccccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45566554322 335566565 456777888 89988873
No 376
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=25.89 E-value=1.7e+02 Score=31.27 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=55.0
Q ss_pred CCEEEeecChHHHHHHH-HHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 494 GDVLLTYGSSCVVEMIL-LYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL-~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
+.+||..|-++.+=.-| ..+.+.| .+|+++.-++.... . +..-.+......+..+|.||--|-..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G--~~V~~l~R~~~~~~----------~--v~~d~~~~~~~~l~~~D~Vih~A~~~ 212 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG--HEVIQLVRKEPKPG----------K--RFWDPLNPASDLLDGADVLVHLAGEP 212 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESSSCCTT----------C--EECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCCcc----------c--eeecccchhHHhcCCCCEEEECCCCc
Confidence 67899999888765444 4444555 56777754443210 0 11111122233456788887654332
Q ss_pred ecC----Cc-----eecccchHHHHHH-HHhCCCcEEEecccc
Q 006803 573 LSN----GT-----TYSRVGTACVAMV-AHAFRVPVLICCEAY 605 (630)
Q Consensus 573 ~aN----G~-----V~NKiGT~~lAla-Ak~~~VPV~V~aet~ 605 (630)
..+ .. -+|-.||..|+-+ |+..++..+|.+.+.
T Consensus 213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~ 255 (516)
T 3oh8_A 213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAV 255 (516)
T ss_dssp ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEG
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 111 00 1377889988887 788888877766553
No 377
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=25.85 E-value=1.3e+02 Score=29.97 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCCcEEEec
Q 006803 585 ACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 585 ~~lAlaAk~~~VPV~V~a 602 (630)
+..+++|+..+||+++..
T Consensus 125 ~~~~~aa~~~giP~v~~~ 142 (391)
T 3tsa_A 125 LIGRVLGGLLDLPVVLHR 142 (391)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred hHHHHHHHHhCCCEEEEe
Confidence 445678899999998874
No 378
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=25.84 E-value=1.4e+02 Score=24.66 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHH---hC
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAH---AF 594 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk---~~ 594 (630)
...+|+|+|..+.. ...+...|...|+.+....+..-+.-+-+-.. .|.|+-|-.+-..-|.-.+..+.+ ..
T Consensus 6 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~----~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 6 HKGDVMIVDDDAHV-RIAVKTILSDAGFHIISADSGGQCIDLLKKGF----SGVVLLDIMMPGMDGWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC----CEEEEEESCCSSSCHHHHHHHHHHTTCCT
T ss_pred CCCeEEEEcCCHHH-HHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHhhcccC
Q ss_pred CCcEEEecc
Q 006803 595 RVPVLICCE 603 (630)
Q Consensus 595 ~VPV~V~ae 603 (630)
++||++++.
T Consensus 81 ~~pii~~s~ 89 (142)
T 3cg4_A 81 GIAIVMLTA 89 (142)
T ss_dssp TEEEEEEEC
T ss_pred CCCEEEEEC
No 379
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=25.74 E-value=48 Score=35.09 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=44.6
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
+..|+.+|-..+=....+.++++| ++|++.|+|....|. ..|. .||.+.+-.+. . ..+..+|.||++.
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~~~~---~~l~-~G~~~~~g~~~-~-~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTPPGL---DKLP-EAVERHTGSLN-D-EWLMAADLIVASP 72 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTT--CCCEEEESSSSCTTG---GGSC-TTSCEEESSCC-H-HHHHTCSEEEECT
T ss_pred CCEEEEEeecHHHHHHHHHHHhCC--CEEEEEECCCCcchh---HHhh-CCCEEEECCCc-H-HHhccCCEEEeCC
Confidence 456777777665555556666554 678889998876654 3466 79988755432 2 2234688888864
No 380
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=25.74 E-value=62 Score=29.81 Aligned_cols=72 Identities=11% Similarity=0.035 Sum_probs=47.6
Q ss_pred EEEee-----cChHHHHHHHHHHHH-cCCc---eEEEEcCCCCCchH----HHHHHHHHhCCCcEEEEcchhH-HHHhcc
Q 006803 496 VLLTY-----GSSCVVEMILLYAHE-LGKQ---FRVVVVDSRPKHEG----QALLRRLLAKGLSCTYTHINAV-SYIMHE 561 (630)
Q Consensus 496 vILT~-----g~S~tV~~vL~~A~e-~gk~---f~ViV~ESRP~~eG----~~La~eL~~~GI~vTlI~DsAv-~~iM~~ 561 (630)
.||.. |+|..++.++++... .|.. |.|.-.-+.++..| .+....|.+.||+.. ..-..+ ...+..
T Consensus 9 ~VLFVCtgN~cRSpmAEal~~~~~~~~gl~~~~~~v~SAGt~~~~~g~~~~p~a~~~l~~~Gid~s-~~ar~l~~~~~~~ 87 (161)
T 1d1q_A 9 SVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKIN-HKGKQIKTKHFDE 87 (161)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCCCCHHHHHHHHHTTCCCC-CCBCBCCGGGGGT
T ss_pred EEEEEcCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEeccccCCcCCCCCCHHHHHHHHHcCcCCC-ceEeECCHHHHhh
Confidence 46654 678899999998654 4533 88998888886555 344588999999876 221111 123456
Q ss_pred ccEEEEc
Q 006803 562 VTRVFLG 568 (630)
Q Consensus 562 Vd~VivG 568 (630)
.|+||.=
T Consensus 88 ~DlIl~M 94 (161)
T 1d1q_A 88 YDYIIGM 94 (161)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7887654
No 381
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=25.70 E-value=97 Score=25.87 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=47.0
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH-hc--cccEEEEcceeEecCCceecccchHHHHHHHHh-C
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI-MH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA-F 594 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-M~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~-~ 594 (630)
..+|+|+|..|.. ...+...|...|+.|....+..-+.- +. ..|.||+..+ +.+| +.-|.-.+..+-+. .
T Consensus 6 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~---~~~g~~~~~~l~~~~~ 79 (136)
T 3kto_A 6 HPIIYLVDHQKDA-RAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAH--LEDK---KDSGIELLETLVKRGF 79 (136)
T ss_dssp -CEEEEECSCHHH-HHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETT--GGGB---TTHHHHHHHHHHHTTC
T ss_pred CCeEEEEcCCHHH-HHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCc--CCCC---CccHHHHHHHHHhCCC
Confidence 4688888877654 33355777778888876555333221 22 4677777543 2221 02344444444333 4
Q ss_pred CCcEEEecccccc
Q 006803 595 RVPVLICCEAYKF 607 (630)
Q Consensus 595 ~VPV~V~aet~Kf 607 (630)
++|+++++.....
T Consensus 80 ~~~ii~~s~~~~~ 92 (136)
T 3kto_A 80 HLPTIVMASSSDI 92 (136)
T ss_dssp CCCEEEEESSCCH
T ss_pred CCCEEEEEcCCCH
Confidence 8999999776543
No 382
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=25.70 E-value=4.3e+02 Score=26.66 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=48.7
Q ss_pred CCceEEEEcCC-CCCchHHHHHHHHH-hCCCcEEEEcc---------hhHHHHhc---cccEEEEcceeEecCCce----
Q 006803 517 GKQFRVVVVDS-RPKHEGQALLRRLL-AKGLSCTYTHI---------NAVSYIMH---EVTRVFLGASSVLSNGTT---- 578 (630)
Q Consensus 517 gk~f~ViV~ES-RP~~eG~~La~eL~-~~GI~vTlI~D---------sAv~~iM~---~Vd~VivGAdaI~aNG~V---- 578 (630)
+..+.|+.+++ ...-+-..++.++. +.||++..+.- .++-.+++ ..+.+|+|.-+==+.+.-
T Consensus 99 ~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~~r~l~~~ 178 (306)
T 2wsi_A 99 MQRLPTVFIDQEETFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPFGEALKPI 178 (306)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSSCCCCCSE
T ss_pred CCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecccccccccCce
Confidence 45677777765 44445666775554 47998876632 23333333 467888886432222111
Q ss_pred ------------ecc---cchHHHHHHHHhCCCcEEEeccccc
Q 006803 579 ------------YSR---VGTACVAMVAHAFRVPVLICCEAYK 606 (630)
Q Consensus 579 ------------~NK---iGT~~lAlaAk~~~VPV~V~aet~K 606 (630)
+|+ .....|-.-++.+++|+ |+.|.
T Consensus 179 ~~~d~~~p~~~ri~PL~dWt~~DVw~Yi~~~~lpy---~pLYd 218 (306)
T 2wsi_A 179 QRTDSNWPDFMRLQPLLHWDLTNIWSFLLYSNEPI---CGLYG 218 (306)
T ss_dssp EECCTTSCSCEEECTTTTCCHHHHHHHHHHHCCCB---CHHHH
T ss_pred eccCCCCCCcEEEeChHHCCHHHHHHHHHHcCCCC---ChhHh
Confidence 222 12355666778888887 55553
No 383
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=25.66 E-value=2.2e+02 Score=23.35 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=36.4
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC-CCchHHHHHHHHHhC---CCcEEEEcc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR-PKHEGQALLRRLLAK---GLSCTYTHI 552 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR-P~~eG~~La~eL~~~---GI~vTlI~D 552 (630)
|-.|.+..+...+...+.. ...+.++++|-. |...|..+++.|.+. .+++.+++.
T Consensus 31 g~~v~~~~~~~~a~~~~~~----~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~ 89 (136)
T 3hdv_A 31 GIDAVGADGAEEARLYLHY----QKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSG 89 (136)
T ss_dssp TCCEEEESSHHHHHHHHHH----CTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEES
T ss_pred CceEEEeCCHHHHHHHHHh----CCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeC
Confidence 4456665555554444432 345888888855 888999999999876 366666664
No 384
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=25.65 E-value=2e+02 Score=24.75 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=45.0
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEE--EcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCC
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY--THINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFR 595 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl--I~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~ 595 (630)
.+++++++-..|.. ..+-..+.+.|+.+.+ +...-+..+|..+|.+|+-.. . .| .| ...+=|-.+|
T Consensus 31 ~~~~l~i~G~g~~~--~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~adv~v~ps~--~-e~-----~~--~~~~Eama~G 98 (166)
T 3qhp_A 31 QDIVLLLKGKGPDE--KKIKLLAQKLGVKAEFGFVNSNELLEILKTCTLYVHAAN--V-ES-----EA--IACLEAISVG 98 (166)
T ss_dssp GGEEEEEECCSTTH--HHHHHHHHHHTCEEECCCCCHHHHHHHHTTCSEEEECCC--S-CC-----CC--HHHHHHHHTT
T ss_pred CCeEEEEEeCCccH--HHHHHHHHHcCCeEEEeecCHHHHHHHHHhCCEEEECCc--c-cC-----cc--HHHHHHHhcC
Confidence 47888888766553 3344555556665554 234668888999999987543 1 11 23 2455666789
Q ss_pred C-cEEE
Q 006803 596 V-PVLI 600 (630)
Q Consensus 596 V-PV~V 600 (630)
+ ||++
T Consensus 99 ~vPvi~ 104 (166)
T 3qhp_A 99 IVPVIA 104 (166)
T ss_dssp CCEEEE
T ss_pred CCcEEe
Confidence 5 9998
No 385
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=25.64 E-value=1.8e+02 Score=32.42 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHHH
Q 006803 412 LVRDLTAKISSYVSFLIECRPLSMS-MGNAIRFQKSRIAKL--------------------PLTLSETEAKAALCNDIDR 470 (630)
Q Consensus 412 ~~rdL~~~L~~~i~~L~~aRPtsVs-LgNAIrrlk~~I~~~--------------------~~~~s~~eaKe~L~e~Id~ 470 (630)
...+|.+.|...-+...+-+|.|+. +||+++-+-+.++.. +...+.+|+.+...+.-+.
T Consensus 210 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~ 289 (551)
T 1x87_A 210 MTDSLDAALEMAKQAKEEKKALSIGLVGNAAEVLPRLVETGFVPDVLTDQTSAHDPLNGYIPAGLTLDEAAELRARDPKQ 289 (551)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3446677777777777788999986 799988776665542 1235778988888888887
Q ss_pred HHHHHHHHHHHHHHHHH---HhhccCCCEEEeecChH-----------------HHHHHHHHHHHcCC-ceEEEEcCCCC
Q 006803 471 FINEKIILADKVIVRHA---ATKVRDGDVLLTYGSSC-----------------VVEMILLYAHELGK-QFRVVVVDSRP 529 (630)
Q Consensus 471 fi~E~i~~A~~~Ia~~a---~~~I~dgdvILT~g~S~-----------------tV~~vL~~A~e~gk-~f~ViV~ESRP 529 (630)
|.+. +.+.+..|. .++-..|..+.-|||+- -|..+|+-.+..|+ .||=+++-..|
T Consensus 290 ~~~~----~~~Sm~rhv~am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdp 365 (551)
T 1x87_A 290 YIAR----AKQSIAAHVRAMLAMQKQGAVTFDYGNNIRQVAKDEGVDDAFSFPGFVPAYIRPLFCEGKGPFRWVALSGDP 365 (551)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHTTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHHTTCEEEEEEETTCCH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCH
Confidence 7643 445555543 34445688888888874 24555555566666 37766665555
No 386
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=25.57 E-value=2.2e+02 Score=23.53 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhcc-----ccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHE-----VTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~-----Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
...+|+|+|..|.. -..|...|...|..+....+..-+.-+-. .|.||+..+ +-..-|.-.+..+-+
T Consensus 2 ~~~~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~-------l~~~~g~~~~~~l~~ 73 (143)
T 3jte_A 2 SLAKILVIDDESTI-LQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMK-------MPKLSGMDILREIKK 73 (143)
T ss_dssp -CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESC-------CSSSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHH-HHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCC-------CCCCcHHHHHHHHHH
Q ss_pred hC-CCcEEEecc
Q 006803 593 AF-RVPVLICCE 603 (630)
Q Consensus 593 ~~-~VPV~V~ae 603 (630)
.+ ++|+++++.
T Consensus 74 ~~~~~~ii~ls~ 85 (143)
T 3jte_A 74 ITPHMAVIILTG 85 (143)
T ss_dssp HCTTCEEEEEEC
T ss_pred hCCCCeEEEEEC
No 387
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A*
Probab=25.54 E-value=1.7e+02 Score=30.28 Aligned_cols=76 Identities=21% Similarity=0.168 Sum_probs=48.0
Q ss_pred EeecChHHHHHHHHHHH-HcCCceE--EEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEec
Q 006803 498 LTYGSSCVVEMILLYAH-ELGKQFR--VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLS 574 (630)
Q Consensus 498 LT~g~S~tV~~vL~~A~-e~gk~f~--ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~a 574 (630)
|++.++..+...+.++. +.|..++ ||++-+-|.++-..=.+.|.. +|||+|-
T Consensus 188 m~~~yd~~Lr~~a~~aA~~~gi~~~~Gvy~~~~GP~FeT~AE~r~~r~------------------------~GadaVg- 242 (303)
T 3la8_A 188 MSNAYTADYREVAHQVADKIGIKLDEGVYIGVSGPSYETPAEIRAFKT------------------------LGADAVG- 242 (303)
T ss_dssp CTTSSCHHHHHHHHHHHHHHTCCCEEEEEEECCCSSCCCHHHHHHHHH------------------------TTCSEEE-
T ss_pred CCcccCHHHHHHHHHHHHHcCCceEEEEEEEeeCCccCCHHHHHHHHH------------------------cCCCEEe-
Confidence 44455555555555543 4565554 788888888875432233322 2555554
Q ss_pred CCceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 575 NGTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 575 NG~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.=|...|.+|+++++||.+++--.
T Consensus 243 -------Mst~pEa~vAre~gi~~~~Is~IT 266 (303)
T 3la8_A 243 -------MSTVPEVIVAVHSGLKVLGISAIT 266 (303)
T ss_dssp -------SSSHHHHHHHHHTTCEEEEEEEEE
T ss_pred -------ccHHHHHHHHHHcCCCEEEEEEEe
Confidence 335789999999999999876543
No 388
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=25.39 E-value=1.7e+02 Score=28.76 Aligned_cols=75 Identities=21% Similarity=0.168 Sum_probs=42.7
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEE-EcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc--ccc
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVV-VVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH--EVT 563 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~Vd 563 (630)
||..|..+....+|....+....++|. |+-.+|...|...+ .+.|||+.++.. ..+-..+. ++|
T Consensus 27 ~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 103 (229)
T 3auf_A 27 VLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERA---RRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVD 103 (229)
T ss_dssp EEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHH---HHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCS
T ss_pred EEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHH---HHcCCCEEEECcccccchhhccHHHHHHHHhcCCC
Confidence 344477777666666655432234532 33335666564444 567999987642 33444444 689
Q ss_pred EEEEcc-eeEec
Q 006803 564 RVFLGA-SSVLS 574 (630)
Q Consensus 564 ~VivGA-daI~a 574 (630)
++|+-+ -.|+.
T Consensus 104 liv~agy~~IL~ 115 (229)
T 3auf_A 104 LVCLAGYMRLVR 115 (229)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEEcChhHhCC
Confidence 888854 35553
No 389
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=25.33 E-value=33 Score=32.98 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=20.2
Q ss_pred ecccchHHHHHHHHhCCCcEEEeccc
Q 006803 579 YSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 579 ~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
+|-.||..+.-+|+.+++.|+.+...
T Consensus 82 ~n~~~~~~l~~~~~~~~~~~v~~SS~ 107 (287)
T 3sc6_A 82 INAIGARNVAVASQLVGAKLVYISTD 107 (287)
T ss_dssp HHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEchh
Confidence 46678999999999999986655443
No 390
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=25.33 E-value=49 Score=33.15 Aligned_cols=110 Identities=12% Similarity=0.063 Sum_probs=59.2
Q ss_pred CCCEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCch-H-HH------HHHHHHhCCCcEEEEcc----hhHHHH-
Q 006803 493 DGDVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHE-G-QA------LLRRLLAKGLSCTYTHI----NAVSYI- 558 (630)
Q Consensus 493 dgdvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~e-G-~~------La~eL~~~GI~vTlI~D----sAv~~i- 558 (630)
.+.+||..|-++.+=. ++..+.+.+...+|++++-.+... . .. -...+...++. .+..| ..+..+
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~d~~~~~~~~ 87 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE-VIAADINNPLDLRRLE 87 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSE-EEECCTTCHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCce-EEECCCCCHHHHHHhh
Confidence 3678999988886643 444444533456777776433200 0 00 00112222332 22233 334444
Q ss_pred hccccEEEEcceeEecC-C-----ceecccchHHHHHHHHhCCCcEEEecc
Q 006803 559 MHEVTRVFLGASSVLSN-G-----TTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 559 M~~Vd~VivGAdaI~aN-G-----~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
+..+|.||--|-.+-.. . --+|-.||..+.-+|+..+++|+.+..
T Consensus 88 ~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS 138 (362)
T 3sxp_A 88 KLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASS 138 (362)
T ss_dssp TSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCc
Confidence 56788877655421100 0 114678999999999999999554443
No 391
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=25.27 E-value=3.2e+02 Score=28.91 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=52.2
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-c---------hhHHHHhcc
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-I---------NAVSYIMHE 561 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D---------sAv~~iM~~ 561 (630)
...++++|-|.+..+..++.... .+..-.|+|.+ |.+.+..-+ +...|..+..+. | ..+-..+..
T Consensus 156 ~~~~i~~t~G~~~al~~~~~~l~-~~~gd~Vlv~~--p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 230 (500)
T 3tcm_A 156 NADDIFLTDGASPGVHLMMQLLI-RNEKDGILVPI--PQYPLYSAS--IALHGGALVPYYLNESTGWGLETSDVKKQLED 230 (500)
T ss_dssp CGGGEEEESSSHHHHHHHHHHHC-CSTTEEEEEEE--SCCTHHHHH--HHHTTCEEEEEECBTTTTSBCCHHHHHHHHHH
T ss_pred CcccEEEcCCHHHHHHHHHHHHc-CCCCCEEEEeC--CCcHhHHHH--HHHcCCEEEEEecccccCCCCCHHHHHHHHHH
Confidence 34578888888877766665542 12233555544 555544333 344577665553 2 122223332
Q ss_pred -------ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 562 -------VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 562 -------Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
+..|++- .-=-..|.+++.----.|+-+|+.|++.+++
T Consensus 231 ~~~~~~~~k~ivl~-~p~NPtG~~~s~~~l~~i~~la~~~~~~li~ 275 (500)
T 3tcm_A 231 ARSRGINVRALVVI-NPGNPTGQVLAEENQYDIVKFCKNEGLVLLA 275 (500)
T ss_dssp HHHTTCEEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhcCCCceEEEEE-CCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 2233221 1111223444333344566678889988776
No 392
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=25.25 E-value=2.1e+02 Score=29.02 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=33.3
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 550 (630)
.+..|++||.+|.+++=...+..|...|- +||+++..+. -..++ .+.|....+-
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga--~Vi~~~~~~~--~~~~~---~~lGa~~vi~ 239 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATGA--EVIVTSSSRE--KLDRA---FALGADHGIN 239 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHH---HHHTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEecCch--hHHHH---HHcCCCEEEc
Confidence 35789999999944443455555665564 8998886543 22333 3446655544
No 393
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=25.22 E-value=90 Score=29.79 Aligned_cols=52 Identities=13% Similarity=-0.027 Sum_probs=32.6
Q ss_pred hHHHHhcc--ccEEEEcceeEec------C---CceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 554 AVSYIMHE--VTRVFLGASSVLS------N---GTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 554 Av~~iM~~--Vd~VivGAdaI~a------N---G~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.+..++.. +|.||--|-.+-. + ---.|-.||..+.-+|+.++++-+|.+.+.
T Consensus 52 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~ 114 (319)
T 4b8w_A 52 QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLST 114 (319)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG
T ss_pred HHHHHHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcch
Confidence 34455554 7777765433210 0 013477899999999999999866665554
No 394
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=25.21 E-value=1.3e+02 Score=33.37 Aligned_cols=66 Identities=24% Similarity=0.192 Sum_probs=47.6
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHH---c----C-C---------------------------ceEEEEcCCCC
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHE---L----G-K---------------------------QFRVVVVDSRP 529 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e---~----g-k---------------------------~f~ViV~ESRP 529 (630)
...+.+.++|-++.||+..+.|...|..|-- . | + .+.|+|+-+-
T Consensus 203 ~~l~~~~~~g~~~~t~~~~~~vr~~L~~aGf~v~~~~~~g~krem~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG- 281 (676)
T 3ps9_A 203 NAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGG- 281 (676)
T ss_dssp HHHHHHEEEEEEEEESCCCHHHHHHHHHHTCEEEEEECSTTCCEEEEEECCSCCCCCCSCGGGCCCCCSCCEEEEECCS-
T ss_pred HHHHHHhCCCCEEEeccCcHHHHHHHHhCCeEEEeccccccchhhhheeccccccccccCCcccCccCCCCCEEEECCC-
Confidence 3345677889999999999999988887630 0 0 0 1355555552
Q ss_pred CchHHHHHHHHHhCCCcEEEEcc
Q 006803 530 KHEGQALLRRLLAKGLSCTYTHI 552 (630)
Q Consensus 530 ~~eG~~La~eL~~~GI~vTlI~D 552 (630)
.-|.-++..|.+.|++|+++--
T Consensus 282 -iaGlsaA~~La~~G~~V~vlEk 303 (676)
T 3ps9_A 282 -IASALLSLALLRRGWQVTLYCA 303 (676)
T ss_dssp -HHHHHHHHHHHTTTCEEEEEES
T ss_pred -HHHHHHHHHHHHCCCeEEEEeC
Confidence 3477788999999999999863
No 395
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=25.18 E-value=57 Score=30.12 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=48.5
Q ss_pred ecChHHHHHHHHHHHH-cC--CceEEEEcCCCCCchHH----HHHHHHHhCCCcEEEEcchhH-HHHhccccEEEEcce
Q 006803 500 YGSSCVVEMILLYAHE-LG--KQFRVVVVDSRPKHEGQ----ALLRRLLAKGLSCTYTHINAV-SYIMHEVTRVFLGAS 570 (630)
Q Consensus 500 ~g~S~tV~~vL~~A~e-~g--k~f~ViV~ESRP~~eG~----~La~eL~~~GI~vTlI~DsAv-~~iM~~Vd~VivGAd 570 (630)
.|+|..++.++++... .| ..|.|.-.-+.|+..|. +....|.+.||++. ..-..+ ...+...|+||.=.+
T Consensus 15 ~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s-~~ar~l~~~~~~~~DlIi~M~~ 92 (161)
T 2cwd_A 15 ICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFP-HVARRLTREDVLAYDHILVMDR 92 (161)
T ss_dssp SSHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHHTCCCC-CCCCBCCHHHHHHCSEEEESSH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcEEEEecccCCCccCCCCCHHHHHHHHHcCcCcc-ccccCCCHhHhccCCEEEECCh
Confidence 3578899999998654 35 36899999999977663 44588899999976 322222 244557898876543
No 396
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=25.18 E-value=2.9e+02 Score=27.86 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=49.0
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh------HHHH---hc-ccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA------VSYI---MH-EVT 563 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA------v~~i---M~-~Vd 563 (630)
..+++|.|-+..+..++..+...| -+|++.+ |.+.|...+ +...|+.+..+.... +..+ +. ++.
T Consensus 103 ~~v~~~~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~ 176 (409)
T 2gb3_A 103 ENVLVTNGGSEAILFSFAVIANPG--DEILVLE--PFYANYNAF--AKIAGVKLIPVTRRMEEGFAIPQNLESFINERTK 176 (409)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHHHH--HHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEE
T ss_pred HHEEEeCCHHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCe
Confidence 467777776666666666553333 3555543 445554433 334577776664221 1111 11 223
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.|++. ..-...|.++..-=--.|+-+|+.||+.+++
T Consensus 177 ~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 212 (409)
T 2gb3_A 177 GIVLS-NPCNPTGVVYGKDEMRYLVEIAERHGLFLIV 212 (409)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEC-CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 33331 1111123332221124567778899998887
No 397
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=25.17 E-value=88 Score=29.79 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=46.5
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEE-cceeEecCCceecccchHHHHHHHHhCCC
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL-GASSVLSNGTTYSRVGTACVAMVAHAFRV 596 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv-GAdaI~aNG~V~NKiGT~~lAlaAk~~~V 596 (630)
...+|.+++....+ -..+++.|.+.|+.+.++....-..-+..+|.+|| |.. .|+++.......+.-.+...++
T Consensus 12 ~~~~i~~id~~~~~-~~~~~~~l~~~G~~~~vv~~~~~~~~l~~~DglIl~GG~----p~~~~~~~~~~~l~~~~~~~~~ 86 (212)
T 2a9v_A 12 HMLKIYVVDNGGQW-THREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGA----PNIDEELDKLGSVGKYIDDHNY 86 (212)
T ss_dssp CCCBEEEEEESCCT-TCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEEC----SCGGGTGGGHHHHHHHHHHCCS
T ss_pred ccceEEEEeCCCcc-HHHHHHHHHHCCCEEEEEeCCCCHHHHhCCCEEEECCCC----CCCCcccccchhHHHHHHhCCC
Confidence 34577777766555 33467888889998888875321112334787777 331 2333332112222233357899
Q ss_pred cEEEecc
Q 006803 597 PVLICCE 603 (630)
Q Consensus 597 PV~V~ae 603 (630)
|++=+|-
T Consensus 87 PiLGIC~ 93 (212)
T 2a9v_A 87 PILGICV 93 (212)
T ss_dssp CEEEETH
T ss_pred CEEEECh
Confidence 9997764
No 398
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=25.04 E-value=3.7e+02 Score=24.05 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=53.9
Q ss_pred HHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc-ch-hHHHH---h
Q 006803 485 RHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH-IN-AVSYI---M 559 (630)
Q Consensus 485 ~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-Ds-Av~~i---M 559 (630)
+.++++|.+...|..+|..+.-. -+..+...|...|++|.++. |. ..... +
T Consensus 30 ~~~~~~i~~a~~I~i~G~G~S~~------------------------~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 3sho_A 30 EAAVEAICRADHVIVVGMGFSAA------------------------VAVFLGHGLNSLGIRTTVLTEGGSTLTITLANL 85 (187)
T ss_dssp HHHHHHHHHCSEEEEECCGGGHH------------------------HHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTC
T ss_pred HHHHHHHHhCCEEEEEecCchHH------------------------HHHHHHHHHHhcCCCEEEecCCchhHHHHHhcC
Confidence 34455565566777777654311 12234566677899998888 43 22222 2
Q ss_pred ccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 560 HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 560 ~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.+=|.||+ |...|.. .-+..++-.||..|+++++++..
T Consensus 86 ~~~d~~i~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 86 RPTDLMIG----VSVWRYL---RDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp CTTEEEEE----ECCSSCC---HHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCEEEE----EeCCCCC---HHHHHHHHHHHHCCCCEEEEeCC
Confidence 34455544 3335533 34677888999999999998764
No 399
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=24.93 E-value=3.9e+02 Score=26.76 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=53.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---------hhHHHHhc-----
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---------NAVSYIMH----- 560 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------sAv~~iM~----- 560 (630)
.+++|-|-+..+..++....+.| -+|++.+ |.+.+...+ +...|..+..+.. ..+-..+.
T Consensus 103 ~i~~t~g~~~al~~~~~~~~~~g--d~Vl~~~--p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 176 (413)
T 3t18_A 103 SAIATPGGTGAIRSAIFSYLDEG--DPLICHD--YYWAPYRKI--CEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRD 176 (413)
T ss_dssp EEEEESHHHHHHHHHHHHHCCSS--CEEEEES--SCCTHHHHH--HHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred cEEEcCccHHHHHHHHHHhcCCC--CEEEECC--CCcccHHHH--HHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhc
Confidence 56777666666666665543334 3566554 666665443 3335777766652 12223333
Q ss_pred cccEEEEccee-EecCCceecccchHHHHHHHH------hCCCcEEE
Q 006803 561 EVTRVFLGASS-VLSNGTTYSRVGTACVAMVAH------AFRVPVLI 600 (630)
Q Consensus 561 ~Vd~VivGAda-I~aNG~V~NKiGT~~lAlaAk------~~~VPV~V 600 (630)
+..++++=..- --..|.++..---..++-+|+ .|++.+++
T Consensus 177 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 223 (413)
T 3t18_A 177 SDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIV 223 (413)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Confidence 23323332222 234466666555566666777 78877665
No 400
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=24.93 E-value=1.9e+02 Score=32.09 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCch--HHHHHHHHHhCCCcEEEEcc----hhHHHHhc--cccE
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHE--GQALLRRLLAKGLSCTYTHI----NAVSYIMH--EVTR 564 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~e--G~~La~eL~~~GI~vTlI~D----sAv~~iM~--~Vd~ 564 (630)
+.+||..|-++.+= .+++.+.++| .+|+++.-++... -..-...+...++.+.. .| .++..++. .+|.
T Consensus 11 ~~~ilVTGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~-~Dl~d~~~l~~~~~~~~~D~ 87 (699)
T 1z45_A 11 SKIVLVTGGAGYIGSHTVVELIENG--YDCVVADNLSNSTYDSVARLEVLTKHHIPFYE-VDLCDRKGLEKVFKEYKIDS 87 (699)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEE-CCTTCHHHHHHHHHHSCCCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEECCCcchHHHHHHHhhccCCceEEEE-cCCCCHHHHHHHHHhCCCCE
Confidence 57899998888664 4444455555 5777776444321 11112334445665432 33 34556666 5777
Q ss_pred EEEcceeEecCC--------ceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 565 VFLGASSVLSNG--------TTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 565 VivGAdaI~aNG--------~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
||--|-...... --+|-.||..+.-+|+..++.-+|.+.+.
T Consensus 88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~ 136 (699)
T 1z45_A 88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSA 136 (699)
T ss_dssp EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEG
T ss_pred EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcH
Confidence 776543211000 01356789988888888888766655443
No 401
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=24.88 E-value=54 Score=32.44 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=59.7
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhc--cccEE
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMH--EVTRV 565 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~--~Vd~V 565 (630)
.|.+||..|-++-+= .++..+.++| .+|+++.-++...- .+...| .++.+ +..| ..+..++. .+|.|
T Consensus 19 ~~~~vlVTGasG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~~~~l--~~v~~-~~~Dl~d~~~~~~~~~~~~~D~v 92 (330)
T 2pzm_A 19 SHMRILITGGAGCLGSNLIEHWLPQG--HEILVIDNFATGKR-EVLPPV--AGLSV-IEGSVTDAGLLERAFDSFKPTHV 92 (330)
T ss_dssp TCCEEEEETTTSHHHHHHHHHHGGGT--CEEEEEECCSSSCG-GGSCSC--TTEEE-EECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCccch-hhhhcc--CCceE-EEeeCCCHHHHHHHHhhcCCCEE
Confidence 467899999888664 4444444555 57777654332110 111112 23322 2233 34566677 77887
Q ss_pred EEcceeEecC--C---ceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 566 FLGASSVLSN--G---TTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 566 ivGAdaI~aN--G---~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
|--|-....+ . --+|-.||..+.-+|+.+++.-+|...+.
T Consensus 93 ih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~ 137 (330)
T 2pzm_A 93 VHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTA 137 (330)
T ss_dssp EECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEEEEG
T ss_pred EECCccCCCccccChhHHHHHHHHHHHHHHHHHcCCCEEEEecCH
Confidence 7655322110 0 12477899999999988888666654443
No 402
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=24.85 E-value=3.4e+02 Score=26.39 Aligned_cols=108 Identities=14% Similarity=0.035 Sum_probs=58.4
Q ss_pred CCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCC-chHHHHHHHHHhCCCcEEEE-cc----hhHHHHhccccEEE
Q 006803 494 GDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPK-HEGQALLRRLLAKGLSCTYT-HI----NAVSYIMHEVTRVF 566 (630)
Q Consensus 494 gdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~-~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~Vd~Vi 566 (630)
+.+||..|-++-+= .++..+.++|- +|+++.-.+. .+-......|.. +-.++++ .| ..+..++..+|.||
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~Vi 85 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQE-LGDLKIFRADLTDELSFEAPIAGCDFVF 85 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGG-GSCEEEEECCTTTSSSSHHHHTTCSEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCC-CCcEEEEecCCCChHHHHHHHcCCCEEE
Confidence 56899999888664 44445556664 5554322222 111111123321 1123333 23 34566778899998
Q ss_pred EcceeEe---cC----CceecccchHHHHHHHHhCC-CcEEEeccc
Q 006803 567 LGASSVL---SN----GTTYSRVGTACVAMVAHAFR-VPVLICCEA 604 (630)
Q Consensus 567 vGAdaI~---aN----G~V~NKiGT~~lAlaAk~~~-VPV~V~aet 604 (630)
--|-.+. .+ ---.|-.||..+.-+|+.++ +.-+|.+.+
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS 131 (338)
T 2rh8_A 86 HVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS 131 (338)
T ss_dssp EESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred EeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence 6553221 11 11237789999998888885 776665544
No 403
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=24.79 E-value=2.3e+02 Score=29.62 Aligned_cols=78 Identities=9% Similarity=0.028 Sum_probs=44.2
Q ss_pred ceEEEEcCCCCCchHHH-HH-------HHHHhCCCcEEEEcc--------hhHHHHhc-cccEEEEcceeEecCCceecc
Q 006803 519 QFRVVVVDSRPKHEGQA-LL-------RRLLAKGLSCTYTHI--------NAVSYIMH-EVTRVFLGASSVLSNGTTYSR 581 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~-La-------~eL~~~GI~vTlI~D--------sAv~~iM~-~Vd~VivGAdaI~aNG~V~NK 581 (630)
.-+|++.+ .|.+.+.. +. ..|...|+.+..+.. ..+-..+. +..+|++.. +-|...|.
T Consensus 101 GD~Vl~~~-~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~----s~g~p~np 175 (409)
T 3jzl_A 101 DDELLYIT-GQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQR----SRGYADRP 175 (409)
T ss_dssp TCEEEECS-SSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEEC----SCTTSSSC
T ss_pred CCEEEEeC-CCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEEC----CCCCCCCC
Confidence 34666665 34444443 33 356677998888753 23333343 333443321 22446677
Q ss_pred cchH----HHHHHHHh--CCCcEEEe
Q 006803 582 VGTA----CVAMVAHA--FRVPVLIC 601 (630)
Q Consensus 582 iGT~----~lAlaAk~--~~VPV~V~ 601 (630)
.|+. .|+-+|+. |+++|+|=
T Consensus 176 tg~v~~l~~I~~la~~~~~~~~livD 201 (409)
T 3jzl_A 176 SFTIEKIKEMIVFVKNINPEVIVFVD 201 (409)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cCccccHHHHHHHHHhhCCCCEEEEe
Confidence 7764 46777888 99988873
No 404
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=24.76 E-value=1e+02 Score=30.06 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=43.1
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEc----------chhHHHHhc--cccE
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTH----------INAVSYIMH--EVTR 564 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~Vd~ 564 (630)
||.-|+.+....+|... ..+..++|..+=|.|...+... -.++|||+..+. |..+...+. ++|+
T Consensus 17 vl~SG~gsnl~all~~~-~~~~~~eI~~Vis~~~a~~~~~---A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dl 92 (215)
T 3da8_A 17 VLASGTGSLLRSLLDAA-VGDYPARVVAVGVDRECRAAEI---AAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDL 92 (215)
T ss_dssp EEESSCCHHHHHHHHHS-STTCSEEEEEEEESSCCHHHHH---HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCChHHHHHHHHHH-hccCCCeEEEEEeCCchHHHHH---HHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCE
Confidence 44447766666666543 3233456655555554444433 346799999885 234445555 6899
Q ss_pred EEEcc-eeEec
Q 006803 565 VFLGA-SSVLS 574 (630)
Q Consensus 565 VivGA-daI~a 574 (630)
+++-+ -.|+.
T Consensus 93 ivlagy~~iL~ 103 (215)
T 3da8_A 93 VVSAGFMRILG 103 (215)
T ss_dssp EEEEECCSCCC
T ss_pred EEEcCchhhCC
Confidence 88854 34543
No 405
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=24.74 E-value=1.8e+02 Score=29.28 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=34.2
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 550 (630)
.+..|++||.+|.+++=...+..|+..|- +|++++..+.. ..+ +.+.|.+.++-
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~--~~~---~~~lGa~~~~~ 218 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA--FVVCTARSPRR--LEV---AKNCGADVTLV 218 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHH---HHHTTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEcCCHHH--HHH---HHHhCCCEEEc
Confidence 46789999999975544555666666664 48888765432 223 34567775543
No 406
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=24.73 E-value=93 Score=30.26 Aligned_cols=99 Identities=9% Similarity=0.088 Sum_probs=54.7
Q ss_pred EEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE----cchhHHHHhccccEEEEcce
Q 006803 496 VLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT----HINAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 496 vILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI----~DsAv~~iM~~Vd~VivGAd 570 (630)
+||..|-++.+=. ++..+.++| .|+++..+....... ...+ ++++ +|..+..++..+|.||--|-
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~~~-----~~~~--~~~~~~Dl~~~~~~~~~~~~d~vih~a~ 72 (313)
T 3ehe_A 3 LIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNEEF-----VNEA--ARLVKADLAADDIKDYLKGAEEVWHIAA 72 (313)
T ss_dssp CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCGGG-----SCTT--EEEECCCTTTSCCHHHHTTCSEEEECCC
T ss_pred EEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCChhh-----cCCC--cEEEECcCChHHHHHHhcCCCEEEECCC
Confidence 5788888776644 444444555 444444433221111 1222 3332 23456667778888886553
Q ss_pred eEecCCc--------eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 571 SVLSNGT--------TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 571 aI~aNG~--------V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
....+.+ -+|-.||..+.-+|+.+++.-+|...+
T Consensus 73 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 73 NPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 2211111 137789999999999888866665544
No 407
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=24.47 E-value=1.3e+02 Score=25.90 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=35.2
Q ss_pred HHHHHhCCCcEEEEcchhH-HHHhccccEEEEcceeEecCCceec--ccchHHHHHHHHhCCCcEEEec
Q 006803 537 LRRLLAKGLSCTYTHINAV-SYIMHEVTRVFLGASSVLSNGTTYS--RVGTACVAMVAHAFRVPVLICC 602 (630)
Q Consensus 537 a~eL~~~GI~vTlI~DsAv-~~iM~~Vd~VivGAdaI~aNG~V~N--KiGT~~lAlaAk~~~VPV~V~a 602 (630)
+..|.+.|+.|+++..... ..-+.+.|.||+|+-. + +|+..- .+-.+.--+...-.++++.+++
T Consensus 20 a~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pt-y-~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~ 86 (138)
T 5nul_A 20 AKGIIESGKDVNTINVSDVNIDELLNEDILILGCSA-M-TDEVLEESEFEPFIEEISTKISGKKVALFG 86 (138)
T ss_dssp HHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECC-B-TTTBCCTTTHHHHHHHHGGGCTTCEEEEEE
T ss_pred HHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCc-c-CCCCCChHHHHHHHHHHHhhcCCCEEEEEE
Confidence 4556667888777654332 2235678999999754 3 233322 2333332222224578887765
No 408
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.36 E-value=1.5e+02 Score=25.38 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=37.1
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCC-CCCchHHHHHHHHHhC----CCcEEEEcc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDS-RPKHEGQALLRRLLAK----GLSCTYTHI 552 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES-RP~~eG~~La~eL~~~----GI~vTlI~D 552 (630)
|..|.+..+...++..|. ...+.++++|. -|...|..+++.|.+. .+++.+++.
T Consensus 31 g~~v~~~~~~~~al~~l~-----~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 31 GYQTEHVRNGREAVRFLS-----LTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp TCEEEEESSHHHHHHHHT-----TCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEEC
T ss_pred CCEEEEeCCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEEC
Confidence 556666655544444332 24578888875 4888999999999874 678888875
No 409
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=24.27 E-value=64 Score=32.99 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=58.0
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEE-EcCCCC-CchHHHHHHHHH---hCCCcEEEEcchhHHHHhccccEEEEcc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVV-VVDSRP-KHEGQALLRRLL---AKGLSCTYTHINAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~Vi-V~ESRP-~~eG~~La~eL~---~~GI~vTlI~DsAv~~iM~~Vd~VivGA 569 (630)
-.|..+|.++.+=..+.++..+...++++ ++|..+ ...|..+. +|. ..|++++ . .+..++.++|.||
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~g-el~G~~~~gv~v~--~--dl~~ll~~aDVvI--- 93 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDAS-ILIGSDFLGVRIT--D--DPESAFSNTEGIL--- 93 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGG-GGTTCSCCSCBCB--S--CHHHHTTSCSEEE---
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchH-HhhccCcCCceee--C--CHHHHhcCCCEEE---
Confidence 36899998887777777766666777744 556543 34454332 222 3455543 2 2334555666554
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
++.+.-.++..+..|..+++|+++.+-
T Consensus 94 -------DFT~p~a~~~~~~~~l~~Gv~vViGTT 120 (288)
T 3ijp_A 94 -------DFSQPQASVLYANYAAQKSLIHIIGTT 120 (288)
T ss_dssp -------ECSCHHHHHHHHHHHHHHTCEEEECCC
T ss_pred -------EcCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 223566778888888899999888653
No 410
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=24.26 E-value=1e+02 Score=31.60 Aligned_cols=91 Identities=7% Similarity=0.010 Sum_probs=54.4
Q ss_pred HHHHHHHHh----hccC-CCEEEeecChHHHHHHHHHHHHc---CCceEEEEcCC----CCCchHHHHHHHHHhC-CCcE
Q 006803 481 KVIVRHAAT----KVRD-GDVLLTYGSSCVVEMILLYAHEL---GKQFRVVVVDS----RPKHEGQALLRRLLAK-GLSC 547 (630)
Q Consensus 481 ~~Ia~~a~~----~I~d-gdvILT~g~S~tV~~vL~~A~e~---gk~f~ViV~ES----RP~~eG~~La~eL~~~-GI~v 547 (630)
+.|++.|++ +|.+ |++ +-.++++|+..+....... .++++|+-++. .|......|+..|.+. |+++
T Consensus 125 ~~ia~~AA~~l~~~i~~~~~~-igl~~GsT~~~~~~~L~~~~~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la~~~~~~~ 203 (345)
T 2o0m_A 125 SDFGDVLTNTLNLLLPNGENT-IAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTGGNY 203 (345)
T ss_dssp HHHHHHHHHHHHHHCCSEEEE-EEECCSHHHHHHHHTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHhcCcCCCE-EEECCcHHHHHHHHHhhhccCCCCCcEEEEcCCcCCCCcccCHHHHHHHHHHHhCCce
Confidence 446666665 4888 655 4568888888887765432 13466665442 2333556677888775 8877
Q ss_pred EEE--cch---hH-HHHh------------ccccEEEEcceeE
Q 006803 548 TYT--HIN---AV-SYIM------------HEVTRVFLGASSV 572 (630)
Q Consensus 548 TlI--~Ds---Av-~~iM------------~~Vd~VivGAdaI 572 (630)
.++ ++. .. -.++ ..+|+.|+|.-.+
T Consensus 204 ~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~ 246 (345)
T 2o0m_A 204 RALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRA 246 (345)
T ss_dssp CCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEH
T ss_pred EEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCc
Confidence 643 221 11 1122 2699999998643
No 411
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=24.14 E-value=3.4e+02 Score=26.76 Aligned_cols=96 Identities=7% Similarity=0.004 Sum_probs=50.1
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHHhc-------cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYIMH-------EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~-------~Vd~ 564 (630)
+.|++.+-+..+..+|.... ++.-.|++. .|.+.+.. ..+...|+++..+.. ..+-.++. ++..
T Consensus 105 ~~i~~~sGt~a~~~~l~~~~--~~gd~v~~~--~~~~~~~~--~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 105 DTILYSSCFDANGGLFETLL--GPEDAIISD--ELNHASII--DGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp EEEEESCHHHHHHTTHHHHC--CTTCEEEEE--TTCCHHHH--HHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEE
T ss_pred cEEEECchHHHHHHHHHHhc--CCCCEEEEC--CcccHHHH--HHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceE
Confidence 34444333444444443332 233345543 35554432 345567888777752 33444444 3445
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++.. .--..|.+.. --.|+-+|+.|++.+++
T Consensus 179 v~~~~-~~nptG~~~~---l~~i~~l~~~~~~~li~ 210 (399)
T 3tqx_A 179 IATDG-VFSMDGIIAD---LKSICDLADKYNALVMV 210 (399)
T ss_dssp EEEES-EETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEeC-CCCCCCCcCC---HHHHHHHHHHcCCEEEE
Confidence 54433 2234455544 45688889999998776
No 412
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=24.09 E-value=1.2e+02 Score=25.68 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=40.4
Q ss_pred EEEeecChHHHHHHHHHHHH----cCCceEEEEcCC-CCCchHHHHHHHHHh----CCCcEEEEcchh
Q 006803 496 VLLTYGSSCVVEMILLYAHE----LGKQFRVVVVDS-RPKHEGQALLRRLLA----KGLSCTYTHINA 554 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e----~gk~f~ViV~ES-RP~~eG~~La~eL~~----~GI~vTlI~DsA 554 (630)
.|.+..+...++..|..... ....+.++++|- -|...|..+++.|.+ .++++.+++...
T Consensus 32 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 32 EIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp CEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred eEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 56666666665555542211 246789888885 488899999999987 367888877543
No 413
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=24.07 E-value=1.4e+02 Score=28.44 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=45.0
Q ss_pred CEEEeecChHHHHH-HHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEe
Q 006803 495 DVLLTYGSSCVVEM-ILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVL 573 (630)
Q Consensus 495 dvILT~g~S~tV~~-vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~ 573 (630)
.+||..|. +.+=. ++..+.++| ++|+++.-++.. ...|...|+.+......-+. +..+|.||--|-...
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g--~~V~~~~r~~~~-----~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~~ 75 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQG--WRIIGTSRNPDQ-----MEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPDS 75 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGT--CEEEEEESCGGG-----HHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCBT
T ss_pred CcEEEECC-cHHHHHHHHHHHHCC--CEEEEEEcChhh-----hhhHhhCCCeEEEecccccc--cCCCCEEEECCCccc
Confidence 46777775 65543 333344444 566666544322 23344455543332211111 455666655442111
Q ss_pred cCCceecccchHHHHHHHHh--CCCcEEEecccc
Q 006803 574 SNGTTYSRVGTACVAMVAHA--FRVPVLICCEAY 605 (630)
Q Consensus 574 aNG~V~NKiGT~~lAlaAk~--~~VPV~V~aet~ 605 (630)
.+ .-.+..+.-+|+. .++.-+|.+.+.
T Consensus 76 -~~----~~~~~~l~~a~~~~~~~~~~~v~~Ss~ 104 (286)
T 3ius_A 76 -GG----DPVLAALGDQIAARAAQFRWVGYLSTT 104 (286)
T ss_dssp -TB----CHHHHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred -cc----cHHHHHHHHHHHhhcCCceEEEEeecc
Confidence 11 1224555555666 677766665543
No 414
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=24.04 E-value=78 Score=29.22 Aligned_cols=75 Identities=9% Similarity=-0.013 Sum_probs=49.0
Q ss_pred EEEee-----cChHHHHHHHHHHHH-cCC--ceEEEEcCCCCCchH----HHHHHHHHhCCCcEEEEcchhHHHHhcccc
Q 006803 496 VLLTY-----GSSCVVEMILLYAHE-LGK--QFRVVVVDSRPKHEG----QALLRRLLAKGLSCTYTHINAVSYIMHEVT 563 (630)
Q Consensus 496 vILT~-----g~S~tV~~vL~~A~e-~gk--~f~ViV~ESRP~~eG----~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd 563 (630)
.||-. |+|..++.++++... .|. .|.|.-.-+.|+..| .+....|.+.||+.....-.--...+...|
T Consensus 7 ~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~~~~D 86 (157)
T 3n8i_A 7 SVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFD 86 (157)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCCCCCCCBCCHHHHHHCS
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCccccCCCCCHHHHHHHHHcCcCCCCceeECCHHHcCCCC
Confidence 46654 678899999998654 454 588888888887655 344588999999853222111123445678
Q ss_pred EEEEcce
Q 006803 564 RVFLGAS 570 (630)
Q Consensus 564 ~VivGAd 570 (630)
+||.=.+
T Consensus 87 lIi~M~~ 93 (157)
T 3n8i_A 87 YILCMDE 93 (157)
T ss_dssp EEEESSH
T ss_pred EEEEeCc
Confidence 8876443
No 415
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=23.99 E-value=1.8e+02 Score=28.69 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=51.8
Q ss_pred HHHHHhhccCCCEEEeec-ChHHHHHHHHHHHHcC--C-ceEEEEcC-CC---CCchHHHHHHHHHhC-CCcEEEEcc--
Q 006803 484 VRHAATKVRDGDVLLTYG-SSCVVEMILLYAHELG--K-QFRVVVVD-SR---PKHEGQALLRRLLAK-GLSCTYTHI-- 552 (630)
Q Consensus 484 a~~a~~~I~dgdvILT~g-~S~tV~~vL~~A~e~g--k-~f~ViV~E-SR---P~~eG~~La~eL~~~-GI~vTlI~D-- 552 (630)
+++..+.|.++++ |-.+ +.+|+..+..+..... + +.+|+=++ +- |...-..|.+.|.+. |+++.++.-
T Consensus 48 A~~l~~~l~~~~v-iGla~~G~T~~~~~~~l~~~~~~~~~v~~v~L~ggl~~~~~~~~~~~~~~la~~~~~~~~~l~~P~ 126 (264)
T 2r5f_A 48 AHYLETSLSAQDH-IGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPSQS 126 (264)
T ss_dssp HHHHHHHCCTTCE-EEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHHHHTSCEECCCCC-
T ss_pred HHHHHHhCCCCCE-EEECcchHHHHHHHHhhccccCCCCCcEEEECCCCCCCccccCHHHHHHHHHHHhCCeeEEeeCCc
Confidence 3444556777664 5667 8899988887764322 3 56655444 32 233334566666664 776654321
Q ss_pred ---h-----------hHHHHh---ccccEEEEcceeEecCCceecccch
Q 006803 553 ---N-----------AVSYIM---HEVTRVFLGASSVLSNGTTYSRVGT 584 (630)
Q Consensus 553 ---s-----------Av~~iM---~~Vd~VivGAdaI~aNG~V~NKiGT 584 (630)
+ .+-.++ .++|..|+|-=..-.||.+.| -|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Di~l~GIG~~~~~~~i~~-~g~ 174 (264)
T 2r5f_A 127 IEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRN-SGN 174 (264)
T ss_dssp ---------CCHHHHHHHHHHHHTTTCCEEEECCEECC-----------
T ss_pred ccCCHHHHHHHHcChHHHHHHHHHhcCCEEEEecCCCCCCccHhh-cCC
Confidence 1 122222 369999999877777899977 575
No 416
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=23.95 E-value=1.9e+02 Score=29.09 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCEEEeec-ChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE
Q 006803 493 DGDVLLTYG-SSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 493 dgdvILT~g-~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 550 (630)
.|++||.+| .+++=...+..|...| .+||++++.+. -..++++ .|.+..+-
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~--~~~~~~~---lGa~~vi~ 201 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNE--TIEWTKK---MGADIVLN 201 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHH--HHHHHHH---HTCSEEEC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHH--HHHHHHh---cCCcEEEE
Confidence 799999995 4444455556666666 48999987653 2334443 46554443
No 417
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=23.83 E-value=3.1e+02 Score=27.06 Aligned_cols=97 Identities=9% Similarity=0.053 Sum_probs=48.7
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hhHHHHhccc---cEEEEc
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NAVSYIMHEV---TRVFLG 568 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~V---d~VivG 568 (630)
+.|++.+-+..+..++....+ +.-.|++. .|.+.+.. ..+...|+.+..+.. ..+-..+.+. .++|+-
T Consensus 101 ~~i~~~sGt~a~~~~~~~~~~--~gd~v~~~--~~~~~~~~--~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 101 RALLFISGFAANQAVIAAMMA--KEDRIAAD--RLSHASLL--EAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHCC--TTCEEEEE--TTCCHHHH--HHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEE
T ss_pred cEEEeCCcHHHHHHHHHHhCC--CCcEEEEc--ccccHHHH--HHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEE
Confidence 344443335555554443322 23344443 34554332 334456888877752 2233334332 344432
Q ss_pred ceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 569 ASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 569 AdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
...-...|.+.. --.|+-+|++|++.+++
T Consensus 175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 203 (384)
T 1bs0_A 175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMV 203 (384)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCcEEEE
Confidence 222233455554 35678889999997776
No 418
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=23.77 E-value=2.6e+02 Score=28.26 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=33.6
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY 549 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 549 (630)
.+..|++||.+|.+++=...+..|+..|-. +|++++..+.. ..++ .+.|.+.++
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-~Vi~~~~~~~~--~~~~---~~lGa~~vi 241 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAA-RIIGVDINKDK--FAKA---KEVGATECV 241 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS-EEEEECSCGGG--HHHH---HHTTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHHH--HHHH---HHhCCceEe
Confidence 467899999999654445555666655532 78888876543 2233 345765443
No 419
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}
Probab=23.75 E-value=74 Score=30.08 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=54.1
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhcc--ccEEEEcceeEe
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHE--VTRVFLGASSVL 573 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~--Vd~VivGAdaI~ 573 (630)
+||..|-++.+=.-|.....+| .+|+++.-++..+ .|+.+-+.....+..++.. +|.||--|-...
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~g--~~V~~~~r~~~~~----------~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~ 69 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLSER--HEVIKVYNSSEIQ----------GGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTD 69 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHTTT--SCEEEEESSSCCT----------TCEECCTTSHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred EEEEECCCChhHHHHHHHHhcC--CeEEEecCCCcCC----------CCceeccCCHHHHHHHHHhcCCCEEEECCcccC
Confidence 4777787776654444433344 6787776555321 2322211111345556665 777776543211
Q ss_pred cC--------CceecccchHHHHHHHHhCCCcEEEecccc
Q 006803 574 SN--------GTTYSRVGTACVAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 574 aN--------G~V~NKiGT~~lAlaAk~~~VPV~V~aet~ 605 (630)
.+ ---+|-.|+..+.-+|+..++.|+.++...
T Consensus 70 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~ 109 (273)
T 2ggs_A 70 VDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDY 109 (273)
T ss_dssp HHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred hhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecce
Confidence 10 011356789999999988888766655443
No 420
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Probab=23.72 E-value=2.5e+02 Score=30.54 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=63.4
Q ss_pred CEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCC-CCch-HHHHHHHHHhCCCcEEEE-cc----hhHHHHhc------
Q 006803 495 DVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSR-PKHE-GQALLRRLLAKGLSCTYT-HI----NAVSYIMH------ 560 (630)
Q Consensus 495 dvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESR-P~~e-G~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 560 (630)
.++|..|-++-+ ..+.+...++|.. +|+++.-+ +..+ -..+..+|...|..++++ +| .++..++.
T Consensus 240 ~~vLITGgsgGIG~alA~~La~~Ga~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 240 GSVLVTGGTGGIGGRVARRLAEQGAA-HLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp SEEEEETCSSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CEEEEECCCCchHHHHHHHHHHCCCc-EEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 667776666644 4444455555542 44444332 2233 356778999999998877 34 34555555
Q ss_pred cccEEEEcceeEecCCce-------------ecccchHHHHHHHHhCCCcEEEeccc
Q 006803 561 EVTRVFLGASSVLSNGTT-------------YSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V-------------~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.+|.||-.|-....++.+ .|-.|++.+.-+...++..++|++.+
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS 375 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSS 375 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 367777665433233332 34567777777666666667665544
No 421
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=23.69 E-value=31 Score=35.05 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=43.0
Q ss_pred EEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc---hh--HHHHhccccEEEEcce
Q 006803 496 VLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI---NA--VSYIMHEVTRVFLGAS 570 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sA--v~~iM~~Vd~VivGAd 570 (630)
+||..|....-..+...|++.| ++|+++|..|..-+..++ +-.|+.| .. +-.+.+++|.|+.|.+
T Consensus 3 ~I~ilGgg~~g~~~~~~Ak~~G--~~vv~vd~~~~~~~~~~a--------D~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 72 (363)
T 4ffl_A 3 TICLVGGKLQGFEAAYLSKKAG--MKVVLVDKNPQALIRNYA--------DEFYCFDVIKEPEKLLELSKRVDAVLPVNE 72 (363)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTTCTTTTTS--------SEEEECCTTTCHHHHHHHHTSSSEEEECCC
T ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCChhHhhC--------CEEEECCCCcCHHHHHHHhcCCCEEEECCC
Confidence 6888887776677778887766 688888988876554432 2223322 22 2233457999988876
Q ss_pred eE
Q 006803 571 SV 572 (630)
Q Consensus 571 aI 572 (630)
.+
T Consensus 73 ~~ 74 (363)
T 4ffl_A 73 NL 74 (363)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 422
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Probab=23.67 E-value=1.2e+02 Score=29.80 Aligned_cols=108 Identities=16% Similarity=0.046 Sum_probs=58.5
Q ss_pred EEEeecChHHHH-HHHHHHHHc-CCc---eEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhccccEE
Q 006803 496 VLLTYGSSCVVE-MILLYAHEL-GKQ---FRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMHEVTRV 565 (630)
Q Consensus 496 vILT~g~S~tV~-~vL~~A~e~-gk~---f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~Vd~V 565 (630)
+||..|-++.+= .++..+.++ +.. .+|++++-.+......-...|.. +-.++++ .| ..+..++..+|.|
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~V 80 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDA-DPRLRFVHGDIRDAGLLARELRGVDAI 80 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTT-CTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhccc-CCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence 578888777664 444445553 323 67887754332100000112211 2233333 33 3455667788888
Q ss_pred EEcceeEec-----CC---ceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 566 FLGASSVLS-----NG---TTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 566 ivGAdaI~a-----NG---~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|--|-.... +- --+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS 127 (337)
T 1r6d_A 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST 127 (337)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 765532210 00 0146789999999999999866665544
No 423
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=23.65 E-value=6.1e+02 Score=25.98 Aligned_cols=109 Identities=10% Similarity=0.010 Sum_probs=62.8
Q ss_pred CCEEEeecChHHHHHHHH-HHHHcCCceEEEEcCCCCCchHHHHHHHHHhC----CCcEEEEc----ch-hHHHHh--cc
Q 006803 494 GDVLLTYGSSCVVEMILL-YAHELGKQFRVVVVDSRPKHEGQALLRRLLAK----GLSCTYTH----IN-AVSYIM--HE 561 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~-~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~----GI~vTlI~----Ds-Av~~iM--~~ 561 (630)
|.+||..|-++.+=.-|. ...+.| ..+|++++-.+. .-..+..+|... +..++++. |. .+..++ .+
T Consensus 35 ~k~vLVTGatG~IG~~l~~~L~~~g-~~~V~~~~r~~~-~~~~~~~~l~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 112 (399)
T 3nzo_A 35 QSRFLVLGGAGSIGQAVTKEIFKRN-PQKLHVVDISEN-NMVELVRDIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQ 112 (399)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTC-CSEEEEECSCHH-HHHHHHHHHHHHTCCCSSEEEEECCCTTSHHHHHHHHHCCC
T ss_pred CCEEEEEcCChHHHHHHHHHHHHCC-CCEEEEEECCcc-hHHHHHHHHHHhcCCCCCcEEEEEEeCCCHHHHHHHHHhCC
Confidence 678999998887654444 444444 246777764322 122344555442 23455442 22 234444 37
Q ss_pred ccEEEEcceeEec----C------CceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 562 VTRVFLGASSVLS----N------GTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 562 Vd~VivGAdaI~a----N------G~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
+|.||--|-.... | .--.|-.||..++-+|+.+++.-+|...+
T Consensus 113 ~D~Vih~Aa~~~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~gv~r~V~iSS 165 (399)
T 3nzo_A 113 YDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFCVST 165 (399)
T ss_dssp CSEEEECCCCCCGGGGSSHHHHHHHHHHHTHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCEEEECCCcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 8888765422110 0 11257789999999999999876666555
No 424
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=23.62 E-value=3.7e+02 Score=26.16 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=40.3
Q ss_pred ceE-EEEcCCCCCchHHHHHHHHHhCCC-cEEEEcc-hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCC
Q 006803 519 QFR-VVVVDSRPKHEGQALLRRLLAKGL-SCTYTHI-NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFR 595 (630)
Q Consensus 519 ~f~-ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~D-sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~ 595 (630)
.++ ++++-..+. ..+-..+.+.|+ +++++-- .-+..+|..+|.+|+-+ | ....+=|-.+|
T Consensus 212 ~~~~l~i~G~~~~---~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s------g--------~~~~~EAma~G 274 (364)
T 1f0k_A 212 SVTIWHQSGKGSQ---QSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRS------G--------ALTVSEIAAAG 274 (364)
T ss_dssp GEEEEEECCTTCH---HHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECC------C--------HHHHHHHHHHT
T ss_pred CcEEEEEcCCchH---HHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECC------c--------hHHHHHHHHhC
Confidence 577 444544442 344444555665 4555432 35778888999988753 2 33445566679
Q ss_pred CcEEEe
Q 006803 596 VPVLIC 601 (630)
Q Consensus 596 VPV~V~ 601 (630)
+||++.
T Consensus 275 ~Pvi~~ 280 (364)
T 1f0k_A 275 LPALFV 280 (364)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 999986
No 425
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=23.57 E-value=48 Score=31.09 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=41.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchH----HHHHHHHhCCC
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTA----CVAMVAHAFRV 596 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~----~lAlaAk~~~V 596 (630)
+|.|+|--=.+- ..+.+.|.+.|+.++++.|.. .+..+|.||| .-|+-....+.. .+.-.+.+.++
T Consensus 4 ~I~iiD~g~~n~-~si~~al~~~G~~~~v~~~~~---~l~~~D~lil------PG~g~~~~~~~~~~~~~~i~~~~~~~~ 73 (211)
T 4gud_A 4 NVVIIDTGCANI-SSVKFAIERLGYAVTISRDPQ---VVLAADKLFL------PGVGTASEAMKNLTERDLIELVKRVEK 73 (211)
T ss_dssp CEEEECCCCTTH-HHHHHHHHHTTCCEEEECCHH---HHHHCSEEEE------CCCSCHHHHHHHHHHTTCHHHHHHCCS
T ss_pred EEEEEECCCChH-HHHHHHHHHCCCEEEEECCHH---HHhCCCEEEE------CCCCCHHHHHHHHHhcChHHHHHHcCC
Confidence 356666322111 456788999999999987743 3566788766 221211111111 01223556899
Q ss_pred cEEEecc
Q 006803 597 PVLICCE 603 (630)
Q Consensus 597 PV~V~ae 603 (630)
||+=+|=
T Consensus 74 PvlGICl 80 (211)
T 4gud_A 74 PLLGICL 80 (211)
T ss_dssp CEEEETH
T ss_pred CEEEEch
Confidence 9997663
No 426
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=23.48 E-value=96 Score=30.86 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=46.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHHhccccEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYIMHEVTRV 565 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~~Vd~V 565 (630)
.+|+|-+-+..+..+|..+ ..+..-+|++.+ |.+.+...+ +...|+.+.++... .+-..+..=.++
T Consensus 53 ~~i~~~sgt~al~~~l~~l-~~~~gd~Vi~~~--~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 127 (373)
T 3frk_A 53 YCIGCGNGLDALHLILKGY-DIGFGDEVIVPS--NTFIATALA--VSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKA 127 (373)
T ss_dssp EEEEESCHHHHHHHHHHHT-TCCTTCEEEEET--TSCTHHHHH--HHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEE
T ss_pred eEEEeCCHHHHHHHHHHHc-CCCCcCEEEECC--CCcHHHHHH--HHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeE
Confidence 5666655444444444433 122233566543 455553333 44558777776532 122222221233
Q ss_pred EEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 566 FLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 566 ivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|+ ..-..|.+.. --.|+-+|+.||+.|+|
T Consensus 128 v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~ 156 (373)
T 3frk_A 128 II---AVHLYGQPAD---MDEIKRIAKKYNLKLIE 156 (373)
T ss_dssp EE---EECCTTCCCC---HHHHHHHHHHHTCEEEE
T ss_pred EE---EECCCcCccc---HHHHHHHHHHcCCEEEE
Confidence 33 1112333221 24677888999998887
No 427
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=23.46 E-value=1.2e+02 Score=30.52 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=14.7
Q ss_pred HHHHHHhCCCcEEEecccc
Q 006803 587 VAMVAHAFRVPVLICCEAY 605 (630)
Q Consensus 587 lAlaAk~~~VPV~V~aet~ 605 (630)
.+++|+..+||++.++..+
T Consensus 136 ~~~~a~~~giP~v~~~~~~ 154 (398)
T 4fzr_A 136 GPLVAATLGIPWIEQSIRL 154 (398)
T ss_dssp HHHHHHHHTCCEEEECCSS
T ss_pred HHHHHHhhCCCEEEeccCC
Confidence 5678889999999876443
No 428
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=23.38 E-value=2.6e+02 Score=28.30 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=33.6
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY 549 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 549 (630)
.+..|++||.+|.+++=...+..|+..|-. +|++++..+.. ..++ .+.|.+.++
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-~Vi~~~~~~~~--~~~a---~~lGa~~vi 241 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGAS-RIIGVGTHKDK--FPKA---IELGATECL 241 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECSCGGG--HHHH---HHTTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCHHH--HHHH---HHcCCcEEE
Confidence 367899999999654434555556555532 78888876543 2333 346776544
No 429
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=23.36 E-value=1.7e+02 Score=28.24 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=42.4
Q ss_pred EEEeecChHHHHHHHHHHHHcCC-ceEEEEc-CCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc--c
Q 006803 496 VLLTYGSSCVVEMILLYAHELGK-QFRVVVV-DSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH--E 561 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk-~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~ 561 (630)
.||.-|+.+....+|. +.+.|. .+.|.++ -.+|...|...| .+.|||+.++.. ..+...+. +
T Consensus 4 aVl~SG~Gs~L~aLi~-~~~~~~~~~~I~~Vvs~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~ 79 (209)
T 1meo_A 4 AVLISGTGSNLQALID-STREPNSSAQIDIVISNKAAVAGLDKA---ERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS 79 (209)
T ss_dssp EEEESSSCTTHHHHHH-HHHSTTCSCEEEEEEESSTTCHHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCchHHHHHHH-HHhcCCCCcEEEEEEeCCCChHHHHHH---HHcCCCEEEECccccCchhhhhHHHHHHHHhcC
Confidence 3566566665555554 455553 4554433 344556675444 567999987642 33444454 6
Q ss_pred ccEEEEcc-eeEe
Q 006803 562 VTRVFLGA-SSVL 573 (630)
Q Consensus 562 Vd~VivGA-daI~ 573 (630)
+|++|+-+ -.|+
T Consensus 80 ~Dliv~a~y~~il 92 (209)
T 1meo_A 80 IDIVCLAGFMRIL 92 (209)
T ss_dssp CCEEEEESCCSCC
T ss_pred CCEEEEcchhhhC
Confidence 89888754 3454
No 430
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=23.34 E-value=62 Score=29.03 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCC-ceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcch
Q 006803 505 VVEMILLYAHELGK-QFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHIN 553 (630)
Q Consensus 505 tV~~vL~~A~e~gk-~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds 553 (630)
+++.+...|.+.|. .++|+|--- ..|++.+ +.|...|+.++.|.|.
T Consensus 54 aa~~~~~~~~~~Gi~~v~v~vkG~---G~Gr~~airaL~~~Gl~I~~I~Dv 101 (117)
T 3r8n_K 54 AAERCADAVKEYGIKNLEVMVKGP---GPGRESTIRALNAAGFRITNITDV 101 (117)
T ss_dssp HHHHHHHHHTTSCCCEEEEEEECS---SSSTTHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHhCCcEEEEEEeCC---CccHHHHHHHHHhCCCEEEEEEEe
Confidence 35667777777774 467777432 3466665 8899999999999984
No 431
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=23.33 E-value=2.4e+02 Score=30.68 Aligned_cols=95 Identities=14% Similarity=-0.017 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEeecChH----HHHHHHHHHHHcCCceEEEEcCCCCCc-hHHHHHHHHHhCCCcEEEE
Q 006803 476 IILADKVIVRHAATKVRDGDVLLTYGSSC----VVEMILLYAHELGKQFRVVVVDSRPKH-EGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 476 i~~A~~~Ia~~a~~~I~dgdvILT~g~S~----tV~~vL~~A~e~gk~f~ViV~ESRP~~-eG~~La~eL~~~GI~vTlI 550 (630)
++.|-..+++...+++.++..|+.+|-++ --+-+-+++++. ...+||++. .+.. +-+.....+.+.|+++...
T Consensus 28 ME~Ag~ava~~i~~~~~~~~~v~VlcG~GNNGGDGlv~AR~L~~~-~~V~v~~~~-~~~~~~a~~~~~~~~~~g~~~~~~ 105 (475)
T 3k5w_A 28 MENAAMALERAVLQNASLGAKVIILCGSGDNGGDGYALARRLVGR-FRVLVFEMK-LTKSPMCQLQKERAKKAGVVIKTY 105 (475)
T ss_dssp HHHHHHHHHHHHHTTSCTTCEEEEEECSSHHHHHHHHHHHHHBTT-BEEEEEESS-CCCSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEECCCCCHHHHHHHHHHHHcC-CceEEEEeC-CCCCHHHHHHHHHHHHCCCcEecc
Confidence 33456666666677776778898888654 222222333332 445555554 2332 2233347788889987643
Q ss_pred cchhHHHHhccccEEEEcceeEecCC
Q 006803 551 HINAVSYIMHEVTRVFLGASSVLSNG 576 (630)
Q Consensus 551 ~DsAv~~iM~~Vd~VivGAdaI~aNG 576 (630)
.++.. ..+...|.|| |+|+-.|
T Consensus 106 ~~~~~-~~~~~~dliI---DaLfGtG 127 (475)
T 3k5w_A 106 EENAL-NQNLECDVLI---DCVIGSH 127 (475)
T ss_dssp CCC-----CCCEEEEE---EESCCTT
T ss_pred ccccc-cccCCCCEEE---EeccCCC
Confidence 32211 2234566554 6666554
No 432
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.15 E-value=1.1e+02 Score=28.22 Aligned_cols=49 Identities=18% Similarity=0.079 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCC-ceEEEEcCC-----CCCchHHHHH-HHHHhCCCcEEEEcch
Q 006803 505 VVEMILLYAHELGK-QFRVVVVDS-----RPKHEGQALL-RRLLAKGLSCTYTHIN 553 (630)
Q Consensus 505 tV~~vL~~A~e~gk-~f~ViV~ES-----RP~~eG~~La-~eL~~~GI~vTlI~Ds 553 (630)
+++.+...|.+.|. .++|+|--. +....|++.+ +.|...|+.+..|.|.
T Consensus 63 aa~~~~~~a~e~Gi~~v~V~vkG~gg~~~~~pG~GresairaL~~~Gl~I~~I~Dv 118 (137)
T 3j20_M 63 AARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDV 118 (137)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEEEECCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEc
Confidence 45677788888885 456666442 2246788887 8999999999999984
No 433
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.09 E-value=1.9e+02 Score=23.95 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=0.0
Q ss_pred cCCceEEEEcCCCCCchHHHHHHHHHhCCC--cEEEEcchhHHHHh-------------ccccEEEEcceeEecCCceec
Q 006803 516 LGKQFRVVVVDSRPKHEGQALLRRLLAKGL--SCTYTHINAVSYIM-------------HEVTRVFLGASSVLSNGTTYS 580 (630)
Q Consensus 516 ~gk~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI~DsAv~~iM-------------~~Vd~VivGAdaI~aNG~V~N 580 (630)
.....+|+|+|..+.. ...+...|...|. .+....+..-+.-+ ...|.||+.. .+-.
T Consensus 3 ~~~~~~iLivdd~~~~-~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~-------~l~~ 74 (149)
T 1k66_A 3 GNATQPLLVVEDSDED-FSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDL-------NLPG 74 (149)
T ss_dssp SCTTSCEEEECCCHHH-HHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECS-------CCSS
T ss_pred CCCCccEEEEECCHHH-HHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEEC-------CCCC
Q ss_pred ccchHHHHHHHHh---CCCcEEEeccc
Q 006803 581 RVGTACVAMVAHA---FRVPVLICCEA 604 (630)
Q Consensus 581 KiGT~~lAlaAk~---~~VPV~V~aet 604 (630)
.-|--.+..+-+. .++|+++++..
T Consensus 75 ~~g~~~~~~l~~~~~~~~~~ii~~t~~ 101 (149)
T 1k66_A 75 TDGREVLQEIKQDEVLKKIPVVIMTTS 101 (149)
T ss_dssp SCHHHHHHHHTTSTTGGGSCEEEEESC
T ss_pred CCHHHHHHHHHhCcccCCCeEEEEeCC
No 434
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=23.08 E-value=1e+02 Score=30.54 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=30.5
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHH
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRL 540 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL 540 (630)
.++.|++||.+|.+.+=...+..|...|- +||+++ .+.. ..++++|
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga--~Vi~~~-~~~~--~~~~~~l 184 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGY--VVDLVS-ASLS--QALAAKR 184 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHTC--EEEEEC-SSCC--HHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEE-Chhh--HHHHHHc
Confidence 35789999999995444555556666664 899888 5543 3444444
No 435
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=23.03 E-value=1.9e+02 Score=24.03 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=44.2
Q ss_pred ceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh-C
Q 006803 519 QFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA-F 594 (630)
Q Consensus 519 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~-~ 594 (630)
..+|+|+|..+.. ...+...|...|+.|....+.. +..+-. ..|.||+.. +.+ .-|.-.+..+-+. .
T Consensus 4 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~-----~~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 4 TPTVMVVDESRIT-FLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEG-----EESLNLIRRIREEFP 74 (142)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTT-----HHHHHHHHHHHHHCT
T ss_pred CCeEEEEeCCHHH-HHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCC-----CcHHHHHHHHHHHCC
Confidence 4567777766543 2334566777788777555432 222222 478888864 222 1233333333333 4
Q ss_pred CCcEEEeccccc
Q 006803 595 RVPVLICCEAYK 606 (630)
Q Consensus 595 ~VPV~V~aet~K 606 (630)
++|+++++....
T Consensus 75 ~~pii~ls~~~~ 86 (142)
T 2qxy_A 75 DTKVAVLSAYVD 86 (142)
T ss_dssp TCEEEEEESCCC
T ss_pred CCCEEEEECCCC
Confidence 799999876543
No 436
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=22.99 E-value=3.2e+02 Score=22.45 Aligned_cols=83 Identities=7% Similarity=-0.015 Sum_probs=49.7
Q ss_pred cCCceEEEEcCCCCCchHHHHHHHHHhCCC--cEEEEcch--hHHHHh------ccccEEEEcceeEecCCceecccchH
Q 006803 516 LGKQFRVVVVDSRPKHEGQALLRRLLAKGL--SCTYTHIN--AVSYIM------HEVTRVFLGASSVLSNGTTYSRVGTA 585 (630)
Q Consensus 516 ~gk~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI~Ds--Av~~iM------~~Vd~VivGAdaI~aNG~V~NKiGT~ 585 (630)
..+..+|+|+|..+.. ...+...|...|. .|....+. ++..+- ...|.||+..+ +.++ -|--
T Consensus 6 ~~~~~~iLivdd~~~~-~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~-----~g~~ 77 (146)
T 3ilh_A 6 TRKIDSVLLIDDDDIV-NFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGI-----NGWE 77 (146)
T ss_dssp -CCEEEEEEECSCHHH-HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSS-----CHHH
T ss_pred cCccceEEEEeCCHHH-HHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCC-----CHHH
Confidence 3567889999887654 3345577888888 66666553 223332 34899988653 2222 2444
Q ss_pred HHHHHHH-----hCCCcEEEeccccc
Q 006803 586 CVAMVAH-----AFRVPVLICCEAYK 606 (630)
Q Consensus 586 ~lAlaAk-----~~~VPV~V~aet~K 606 (630)
.+..+-+ ..++|+++++....
T Consensus 78 ~~~~l~~~~~~~~~~~~ii~~t~~~~ 103 (146)
T 3ilh_A 78 LIDLFKQHFQPMKNKSIVCLLSSSLD 103 (146)
T ss_dssp HHHHHHHHCGGGTTTCEEEEECSSCC
T ss_pred HHHHHHHhhhhccCCCeEEEEeCCCC
Confidence 4444444 36899999876553
No 437
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=22.99 E-value=1.7e+02 Score=29.43 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=20.1
Q ss_pred cCCCEEEeecChH----HHHHHHHHHHH--cCCceEEEEcCCCCC
Q 006803 492 RDGDVLLTYGSSC----VVEMILLYAHE--LGKQFRVVVVDSRPK 530 (630)
Q Consensus 492 ~dgdvILT~g~S~----tV~~vL~~A~e--~gk~f~ViV~ESRP~ 530 (630)
..|.+|+..|.++ |....|..... +|++ |.+++..++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~--V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKK--IAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCC--EEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCE--EEEEecCcc
Confidence 4577888887665 44444443332 5654 444444444
No 438
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=22.90 E-value=2.3e+02 Score=28.49 Aligned_cols=53 Identities=19% Similarity=0.421 Sum_probs=34.2
Q ss_pred hccCCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE
Q 006803 490 KVRDGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY 549 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 549 (630)
.+..|++||.+|.++.+ ..++..|...|- +||+++..+.. ..++++| |....+
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga--~Vi~~~~~~~~--~~~~~~~---ga~~v~ 209 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGA--KVIAVVNRTAA--TEFVKSV---GADIVL 209 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSGGG--HHHHHHH---TCSEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHH--HHHHHhc---CCcEEe
Confidence 35789999999986554 445555655564 89988876643 3444444 655444
No 439
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.76 E-value=2.4e+02 Score=23.27 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=47.0
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHh-CCCcEEEEcchhHHH-Hh---ccccEEEEcceeEecCCceecccchHHHHHHHH
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLA-KGLSCTYTHINAVSY-IM---HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAH 592 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~DsAv~~-iM---~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk 592 (630)
...+|+|+|..+.. ...|...|.+ .|+.|....+..-+. .+ ...|.||+..+ +.+ ..-|.-.+..+-+
T Consensus 3 ~~~~ilivdd~~~~-~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~----~~~g~~~~~~l~~ 75 (140)
T 3lua_A 3 LDGTVLLIDYFEYE-REKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPV----EKEGLEVLSAIRN 75 (140)
T ss_dssp CCCEEEEECSCHHH-HHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSS----HHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHH-HHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCC----CCcHHHHHHHHHh
Confidence 35688888877654 2334566777 788888665543322 22 24788877543 110 1234444444443
Q ss_pred ---hCCCcEEEecccc
Q 006803 593 ---AFRVPVLICCEAY 605 (630)
Q Consensus 593 ---~~~VPV~V~aet~ 605 (630)
..++||++++...
T Consensus 76 ~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 76 NSRTANTPVIIATKSD 91 (140)
T ss_dssp SGGGTTCCEEEEESCC
T ss_pred CcccCCCCEEEEeCCC
Confidence 5689999987654
No 440
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=22.76 E-value=1.3e+02 Score=29.58 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=9.5
Q ss_pred hHHHHHHHHHhCCCcEEEEc
Q 006803 532 EGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 532 eG~~La~eL~~~GI~vTlI~ 551 (630)
.|..+++.|.+.|+.+.++.
T Consensus 12 ~~~~l~~a~~~~G~~v~~~~ 31 (334)
T 2r85_A 12 SALQILKGAKDEGFETIAFG 31 (334)
T ss_dssp THHHHHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHhCCCEEEEEE
Confidence 34444455555555544443
No 441
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=22.69 E-value=2.6e+02 Score=25.86 Aligned_cols=75 Identities=12% Similarity=0.207 Sum_probs=42.8
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhc-cccEEEE-cc-eeEecCCceecccchHHHHHHH-HhCC
Q 006803 522 VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMH-EVTRVFL-GA-SSVLSNGTTYSRVGTACVAMVA-HAFR 595 (630)
Q Consensus 522 ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~Viv-GA-daI~aNG~V~NKiGT~~lAlaA-k~~~ 595 (630)
|.|++.-..+ ...+.+.|.+.|+.++++.... ...+.. .+|.+|+ |- +... +. ...|-. ..++- -..+
T Consensus 4 i~iid~~~s~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~-~~---~~~~~~-~~~i~~~~~~ 77 (195)
T 1qdl_B 4 TLIIDNYDSF-VYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPE-KR---EDIGVS-LDVIKYLGKR 77 (195)
T ss_dssp EEEEECSCSS-HHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTT-SH---HHHTTH-HHHHHHHTTT
T ss_pred EEEEECCCch-HHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChh-hh---hhhhHH-HHHHHHhcCC
Confidence 6666654444 3566789999999999887653 223332 5899988 43 1111 10 012322 12221 2468
Q ss_pred CcEEEec
Q 006803 596 VPVLICC 602 (630)
Q Consensus 596 VPV~V~a 602 (630)
+|++=+|
T Consensus 78 ~PvLGIC 84 (195)
T 1qdl_B 78 TPILGVC 84 (195)
T ss_dssp SCEEEET
T ss_pred CcEEEEe
Confidence 9999766
No 442
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=22.64 E-value=2.3e+02 Score=23.42 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=45.1
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC-CCchHHHHHHHHHh----CCCcEEEEcchhHHHHhccccEEEEc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR-PKHEGQALLRRLLA----KGLSCTYTHINAVSYIMHEVTRVFLG 568 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR-P~~eG~~La~eL~~----~GI~vTlI~DsAv~~iM~~Vd~VivG 568 (630)
|-.|.+..+...+...|.. ..+.++++|.. |...|..+++.|.+ ..+++.+++...-...+. ....-.|
T Consensus 30 g~~v~~~~~~~~a~~~l~~-----~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~-~~~~~~g 103 (140)
T 3grc_A 30 GFDSDMVHSAAQALEQVAR-----RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELE-FNSQPLA 103 (140)
T ss_dssp TCEEEEECSHHHHHHHHHH-----SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHH-HCCTTTC
T ss_pred CCeEEEECCHHHHHHHHHh-----CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHH-HHhhhcC
Confidence 4456565555444444432 35788888754 88899999999987 367888887654332221 0222345
Q ss_pred ceeEecC
Q 006803 569 ASSVLSN 575 (630)
Q Consensus 569 AdaI~aN 575 (630)
++.++.-
T Consensus 104 ~~~~l~k 110 (140)
T 3grc_A 104 VSTWLEK 110 (140)
T ss_dssp CCEEECS
T ss_pred CCEEEeC
Confidence 5555433
No 443
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=22.53 E-value=4.4e+02 Score=27.11 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=60.4
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCC---------CCc---------hHHHHHHHHHhC--CCcEEEEcc-
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSR---------PKH---------EGQALLRRLLAK--GLSCTYTHI- 552 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESR---------P~~---------eG~~La~eL~~~--GI~vTlI~D- 552 (630)
+..||..|..++-..++......|.. ++.++|.. -.+ -...++..|.+. .+.++.+..
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIG-EIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN 196 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCS-EEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC-eEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence 56899999988777777776667754 33333321 111 122344666664 455655542
Q ss_pred ----hhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 553 ----NAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 553 ----sAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
+.+.. +..+|.||.+.|... .--+.+.-+|..+++|++-+
T Consensus 197 i~~~~~~~~-~~~~DlVvd~~Dn~~--------~~r~~ln~~c~~~~~p~i~~ 240 (353)
T 3h5n_A 197 INDYTDLHK-VPEADIWVVSADHPF--------NLINWVNKYCVRANQPYINA 240 (353)
T ss_dssp CCSGGGGGG-SCCCSEEEECCCCST--------THHHHHHHHHHHTTCCEEEE
T ss_pred cCchhhhhH-hccCCEEEEecCChH--------HHHHHHHHHHHHhCCCEEEE
Confidence 22334 778999988776332 03456777899999999965
No 444
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=22.51 E-value=3.9e+02 Score=27.04 Aligned_cols=89 Identities=13% Similarity=0.127 Sum_probs=56.2
Q ss_pred cCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEccee
Q 006803 492 RDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASS 571 (630)
Q Consensus 492 ~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 571 (630)
.+..+|+.+|........+....+...-.+|+|.+-.+ ..-..++.++...|+++. ..+ ...++ ++|.|++..-.
T Consensus 123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~-~~a~~la~~~~~~~~~~~-~~~--~~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVRE-KAAKKFVSYCEDRGISAS-VQP--AEEAS-RCDVLVTTTPS 197 (322)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSH-HHHHHHHHHHHHTTCCEE-ECC--HHHHT-SSSEEEECCCC
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCH-HHHHHHHHHHHhcCceEE-ECC--HHHHh-CCCEEEEeeCC
Confidence 46679999999877776666655433345677765443 234566777776667766 333 33445 89999875322
Q ss_pred --------EecCCceecccchH
Q 006803 572 --------VLSNGTTYSRVGTA 585 (630)
Q Consensus 572 --------I~aNG~V~NKiGT~ 585 (630)
.+..|..++-+|+|
T Consensus 198 ~~pv~~~~~l~~G~~V~~ig~~ 219 (322)
T 1omo_A 198 RKPVVKAEWVEEGTHINAIGAD 219 (322)
T ss_dssp SSCCBCGGGCCTTCEEEECSCC
T ss_pred CCceecHHHcCCCeEEEECCCC
Confidence 34567777777766
No 445
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=22.48 E-value=2.2e+02 Score=29.07 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHH-HHhCCCcEEEEcchh
Q 006803 507 EMILLYAHELGKQFRVVVVDSRPKHEGQALLRR-LLAKGLSCTYTHINA 554 (630)
Q Consensus 507 ~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~e-L~~~GI~vTlI~DsA 554 (630)
...+..|.+.+..|-||+ --.|...|-.-+++ |.+.||||.+|.|.-
T Consensus 54 ~~~~~~~~~~~pDfvI~i-sPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYG-GPNPAAPGPSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHHHHCCSEEEEE-CSCTTSHHHHHHHHHHHTSSSCEEEEEEGG
T ss_pred HHhhhhhhhcCCCEEEEE-CCCCCCCCchHHHHHHHhCCCCEEEEcCCc
Confidence 333334456677776655 44567889888865 667899999999953
No 446
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.40 E-value=43 Score=29.58 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=34.5
Q ss_pred eecChHHHHHHHHHHHHcCCceEEEEcC-CCCCchHHHHHHHHHhCCCcEEEEc
Q 006803 499 TYGSSCVVEMILLYAHELGKQFRVVVVD-SRPKHEGQALLRRLLAKGLSCTYTH 551 (630)
Q Consensus 499 T~g~S~tV~~vL~~A~e~gk~f~ViV~E-SRP~~eG~~La~eL~~~GI~vTlI~ 551 (630)
|..+...++..+.. ..|.++++| .=|...|..+++.|.+.++|+.+++
T Consensus 38 ~a~~g~eAl~~~~~-----~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 38 TASRMQEALDIARK-----GQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp CSCCHHHHHHHHHH-----CCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred EECCHHHHHHHHHh-----CCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 44444444444432 468888777 6799999999999999999976665
No 447
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=22.36 E-value=1.8e+02 Score=32.50 Aligned_cols=114 Identities=15% Similarity=0.209 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHHH
Q 006803 412 LVRDLTAKISSYVSFLIECRPLSMS-MGNAIRFQKSRIAKL--------------------PLTLSETEAKAALCNDIDR 470 (630)
Q Consensus 412 ~~rdL~~~L~~~i~~L~~aRPtsVs-LgNAIrrlk~~I~~~--------------------~~~~s~~eaKe~L~e~Id~ 470 (630)
...+|.+.|...-+...+-+|.|+. +||+++-+-+.++.. +...+.+|+.+...+.-+.
T Consensus 215 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~ 294 (557)
T 1uwk_A 215 QATDLDDALVRIAKYTAEGKAISIALHGNAAEILPELVKRGVRPDMVTDQTSAHDPLNGYLPAGWTWEQYRDRAQTEPAA 294 (557)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHHTCCCSEECCCSCTTCTTTSCCCTTCCHHHHHHHHHHCHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3456777777777777888999986 789988666655442 1235778888888888777
Q ss_pred HHHHHHHHHHHHHHHHH---HhhccCCCEEEeecChH-----------------HHHHHHHHHHHcCC-ceEEEEcCCCC
Q 006803 471 FINEKIILADKVIVRHA---ATKVRDGDVLLTYGSSC-----------------VVEMILLYAHELGK-QFRVVVVDSRP 529 (630)
Q Consensus 471 fi~E~i~~A~~~Ia~~a---~~~I~dgdvILT~g~S~-----------------tV~~vL~~A~e~gk-~f~ViV~ESRP 529 (630)
|.+. +.+.+..|. .++-..|..+.-|||+- -|..+|+-.+..|+ .||=+++-..|
T Consensus 295 ~~~~----~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdp 370 (557)
T 1uwk_A 295 VVKA----AKQSMAVHVQAMLDFQKQGVPTFDYGNNIRQMAKEEGVADAFDFPGFVPAYIRPLFCRGVGPFRWAALSGEA 370 (557)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHTTCCBCBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTTTCBCEEEEETTCCH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCH
Confidence 7643 444555543 34445677777788763 24455555555555 36666655555
No 448
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=22.36 E-value=2.2e+02 Score=31.03 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=68.2
Q ss_pred hccCCCEEEeecChHHH-HHHHHHHHHcCCceEEEEc-CCCC------------CchHHHHHHHHHhCCCcEEEE-cc--
Q 006803 490 KVRDGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVV-DSRP------------KHEGQALLRRLLAKGLSCTYT-HI-- 552 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~-ESRP------------~~eG~~La~eL~~~GI~vTlI-~D-- 552 (630)
.+..|.++|..|-++-+ ..+.+...++|.. +|+++ .-++ ......+..+|...|..++++ +|
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~-~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvt 325 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARDGAG-HLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLT 325 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHHTCC-EEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTT
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHcCCC-EEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCC
Confidence 35667788877766654 3444445555643 23333 3222 122356678898899988877 33
Q ss_pred --hhHHHHhcc------ccEEEEcceeEecCCce-------------ecccchHHHHHHHHhCC-----CcEEEeccc
Q 006803 553 --NAVSYIMHE------VTRVFLGASSVLSNGTT-------------YSRVGTACVAMVAHAFR-----VPVLICCEA 604 (630)
Q Consensus 553 --sAv~~iM~~------Vd~VivGAdaI~aNG~V-------------~NKiGT~~lAlaAk~~~-----VPV~V~aet 604 (630)
.++..++.. +|.||-.|- |..+|.+ .|-.|++.+.-++..+. ..++|++.+
T Consensus 326 d~~~v~~~~~~i~~~g~id~vVh~AG-v~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS 402 (525)
T 3qp9_A 326 DAEAAARLLAGVSDAHPLSAVLHLPP-TVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSS 402 (525)
T ss_dssp SHHHHHHHHHTSCTTSCEEEEEECCC-CCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCc-CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECC
Confidence 455555554 577776653 3444443 35678888888887776 778877554
No 449
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=22.35 E-value=2e+02 Score=31.23 Aligned_cols=90 Identities=14% Similarity=0.018 Sum_probs=52.0
Q ss_pred CCEEEeecChHHHHHHHHH-HHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeE
Q 006803 494 GDVLLTYGSSCVVEMILLY-AHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSV 572 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~-A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI 572 (630)
+..|..+|-.++-...|.. ++++ .++|.+.|.++... +...|.+.||++.+-.+.. .+...+|.||++.- |
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~--G~~V~~sD~~~~~~---~~~~L~~~gi~~~~G~~~~--~~~~~~d~vV~Spg-i 90 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARAL--GHTVTGSDANIYPP---MSTQLEQAGVTIEEGYLIA--HLQPAPDLVVVGNA-M 90 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCCTT---HHHHHHHTTCEEEESCCGG--GGCSCCSEEEECTT-C
T ss_pred CCEEEEEEecHhhHHHHHHHHHhC--CCEEEEECCCCCcH---HHHHHHHCCCEEECCCCHH--HcCCCCCEEEECCC-c
Confidence 4567776655554433222 3344 47899999886543 4578889999887544322 23346888877642 2
Q ss_pred ecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 573 LSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 573 ~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
-. +...-..|++.||||+=
T Consensus 91 ~~---------~~p~l~~a~~~gi~v~~ 109 (524)
T 3hn7_A 91 KR---------GMDVIEYMLDTGLRYTS 109 (524)
T ss_dssp CT---------TSHHHHHHHHHTCCEEE
T ss_pred CC---------CCHHHHHHHHCCCcEEE
Confidence 11 12233455666666663
No 450
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=22.34 E-value=1.2e+02 Score=29.04 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=58.1
Q ss_pred CCEEEeecChHHHHHHH-HHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhccccEEEE
Q 006803 494 GDVLLTYGSSCVVEMIL-LYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMHEVTRVFL 567 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL-~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~Vd~Viv 567 (630)
+.+||..|-++-+=..| +...++| .+|++++-.+.... +-.++++ .| ..+..++.++|.||-
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G--~~V~~~~r~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~ 70 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMA--EILRLADLSPLDPA----------GPNEECVQCDLADANAVNAMVAGCDGIVH 70 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGE--EEEEEEESSCCCCC----------CTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CEEEEEecCCcccc----------CCCCEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence 34678888777654444 3444444 57777765543211 2233333 33 456667777777776
Q ss_pred cceeEecCCc-----eecccchHHHHHHHHhCCCcEEEeccc
Q 006803 568 GASSVLSNGT-----TYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 568 GAdaI~aNG~-----V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
-|-. ..... -+|-.||+.+.-+|+.+++.-+|...+
T Consensus 71 ~Ag~-~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 111 (267)
T 3rft_A 71 LGGI-SVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASS 111 (267)
T ss_dssp CCSC-CSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCC-cCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 5422 11111 258899999999999999866665544
No 451
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=22.32 E-value=4.3e+02 Score=27.29 Aligned_cols=37 Identities=5% Similarity=-0.068 Sum_probs=24.6
Q ss_pred EEEEcceeEecCCceecccc--hHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVG--TACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiG--T~~lAlaAk~~~VPV~V 600 (630)
..+|=.+-+..+|+++..-- --.|+-+|++|++.+++
T Consensus 228 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~ 266 (451)
T 3oks_A 228 LAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIA 266 (451)
T ss_dssp EEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 33333466788877765433 34577789999998876
No 452
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=22.29 E-value=2.2e+02 Score=23.34 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=48.6
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHH--HHhc-c-ccEEEEcceeEecCCceecccchHHHHHHHHh
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVS--YIMH-E-VTRVFLGASSVLSNGTTYSRVGTACVAMVAHA 593 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~-Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~ 593 (630)
...+|+|+|..+.. ...+...|.+.|+.+....+..-+ .+.. . .|.||+..+- .++ -|.-.+..+-+.
T Consensus 6 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~~ 77 (136)
T 3hdv_A 6 ARPLVLVVDDNAVN-REALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRM--QPE-----SGLDLIRTIRAS 77 (136)
T ss_dssp -CCEEEEECSCHHH-HHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCC--SSS-----CHHHHHHHHHTS
T ss_pred CCCeEEEECCCHHH-HHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccC--CCC-----CHHHHHHHHHhc
Confidence 45788888887653 344557788889998887664333 2222 3 7888876542 222 243334333333
Q ss_pred --CCCcEEEeccccc
Q 006803 594 --FRVPVLICCEAYK 606 (630)
Q Consensus 594 --~~VPV~V~aet~K 606 (630)
.++|+++++....
T Consensus 78 ~~~~~~ii~~s~~~~ 92 (136)
T 3hdv_A 78 ERAALSIIVVSGDTD 92 (136)
T ss_dssp TTTTCEEEEEESSCC
T ss_pred CCCCCCEEEEeCCCC
Confidence 5799999876543
No 453
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=22.25 E-value=2.6e+02 Score=22.08 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=44.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH--HHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhCCCc
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV--SYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVP 597 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv--~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VP 597 (630)
+|+|+|..|.. ...+...|...|+.+....+..- ..+-. ..|.||+..+ +.++ -|--.+..+-+..++|
T Consensus 3 ~ilivdd~~~~-~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~-----~g~~~~~~l~~~~~~~ 74 (120)
T 2a9o_A 3 KILIVDDEKPI-SDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLM--LPEI-----DGLEVAKTIRKTSSVP 74 (120)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSS-----CHHHHHHHHHHHCCCC
T ss_pred eEEEEcCCHHH-HHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEecc--CCCC-----CHHHHHHHHHhCCCCC
Confidence 57777776543 23344667778887776554322 22222 5788888653 2222 2333344444567899
Q ss_pred EEEecccc
Q 006803 598 VLICCEAY 605 (630)
Q Consensus 598 V~V~aet~ 605 (630)
+++++...
T Consensus 75 ii~~s~~~ 82 (120)
T 2a9o_A 75 ILMLSAKD 82 (120)
T ss_dssp EEEEESCC
T ss_pred EEEEecCC
Confidence 99987654
No 454
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=22.22 E-value=2.1e+02 Score=28.85 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=33.9
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT 550 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 550 (630)
.+..|++||.+|.+++=...+..|+..|-. +|++++..+.. ..+ +.+.|.+.++-
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-~Vi~~~~~~~~--~~~---a~~lGa~~vi~ 222 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAA-QVVVTDLSATR--LSK---AKEIGADLVLQ 222 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCS-EEEEEESCHHH--HHH---HHHTTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHH--HHH---HHHhCCCEEEc
Confidence 467899999999755444555556555531 78888865432 223 34567765544
No 455
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=22.21 E-value=2.8e+02 Score=28.07 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=33.4
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY 549 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 549 (630)
.+..|++||.+|.+.+=...+..|+..|- -+|++++..+.. ..++ .+.|.+.++
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~--~~~a---~~lGa~~vi 245 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEK--FPKA---KALGATDCL 245 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGG--HHHH---HHTTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHH--HHHH---HHhCCcEEE
Confidence 46789999999965443455555665552 168888876643 2233 345765444
No 456
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=22.20 E-value=1.7e+02 Score=27.65 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=63.6
Q ss_pred CCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc-------
Q 006803 494 GDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------- 560 (630)
Q Consensus 494 gdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------- 560 (630)
+.+||..|-++-+ ..+.+...++| .+|+++..+.......+..+|...|..+.++ +| ..+..++.
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEG--YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567766666644 34444445555 5788877766566667778888888887765 33 33444443
Q ss_pred cccEEEEcceeEecCCc-------------eecccchHHHHHHH----HhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGT-------------TYSRVGTACVAMVA----HAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~-------------V~NKiGT~~lAlaA----k~~~VPV~V~ 601 (630)
++|.||--|- +...+. -+|-.|++.+.-.+ +..+...+|.
T Consensus 82 ~id~lv~nAg-~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~ 138 (246)
T 3osu_A 82 SLDVLVNNAG-ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIIN 138 (246)
T ss_dssp CCCEEEECCC-CCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEECCC-CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6788877663 232222 13778888887766 3344454544
No 457
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=22.19 E-value=1.9e+02 Score=28.37 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=57.1
Q ss_pred CEEEeecChH------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCC--cEEEE---cchhHHHHhcccc
Q 006803 495 DVLLTYGSSC------VVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGL--SCTYT---HINAVSYIMHEVT 563 (630)
Q Consensus 495 dvILT~g~S~------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI---~DsAv~~iM~~Vd 563 (630)
.+|+..|+-. .+...+....+.+..++++++-..|..+ ..+.+. .|+ .++++ .+.-+..+|..+|
T Consensus 199 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~---~l~~~~-~~~~~~v~~~g~~~~~~~~~~~~~ad 274 (394)
T 3okp_A 199 PVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYES---TLRRLA-TDVSQNVKFLGRLEYQDMINTLAAAD 274 (394)
T ss_dssp CEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHH---HHHHHT-GGGGGGEEEEESCCHHHHHHHHHHCS
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHH---HHHHHH-hcccCeEEEcCCCCHHHHHHHHHhCC
Confidence 6788887632 4455555555667788888876655432 223333 332 44444 3367888899999
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+|+-...= .+|...--.| ...+=|-.+|+||++.
T Consensus 275 ~~v~ps~~~-~~~~~~e~~~--~~~~Ea~a~G~PvI~~ 309 (394)
T 3okp_A 275 IFAMPARTR-GGGLDVEGLG--IVYLEAQACGVPVIAG 309 (394)
T ss_dssp EEEECCCCB-GGGTBCCSSC--HHHHHHHHTTCCEEEC
T ss_pred EEEecCccc-cccccccccC--cHHHHHHHcCCCEEEe
Confidence 998743220 0111111122 2344577789999884
No 458
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=22.18 E-value=2.4e+02 Score=24.09 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=22.7
Q ss_pred HHHHHHhCCCc-EE--EEcchhHHHHhccccEEEEcce
Q 006803 536 LLRRLLAKGLS-CT--YTHINAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 536 La~eL~~~GI~-vT--lI~DsAv~~iM~~Vd~VivGAd 570 (630)
|-+.|.+.||+ ++ .+..+.+...+.++|.||++.+
T Consensus 39 l~~~~~~~gi~~~~i~~~~~~~~~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 39 VENALRQLGVSDIESASCSVGEAKGLASNYDIVVASNH 76 (110)
T ss_dssp HHHHHHHTTCCCEEEEEECHHHHHHHGGGCSEEEEETT
T ss_pred HHHHHHHcCCCeEEEEEeeHHHHhhccCCCcEEEECCc
Confidence 33566778887 43 3344455445678999998875
No 459
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=22.03 E-value=1.8e+02 Score=32.47 Aligned_cols=114 Identities=18% Similarity=0.295 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHHH
Q 006803 412 LVRDLTAKISSYVSFLIECRPLSMS-MGNAIRFQKSRIAKL--------------------PLTLSETEAKAALCNDIDR 470 (630)
Q Consensus 412 ~~rdL~~~L~~~i~~L~~aRPtsVs-LgNAIrrlk~~I~~~--------------------~~~~s~~eaKe~L~e~Id~ 470 (630)
...+|.+.|...-+...+-+|.|+. +||+++-+-+.++.. +...+.+|+.+...+.-+.
T Consensus 211 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~ 290 (552)
T 2fkn_A 211 KTASIEEALAWAEEAKLAGKPLSIALLGNAAEVHHTLLNRGVKIDIVTDQTSAHDPLIGYVPEGYSLDEADRLRQDTPEL 290 (552)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHTTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3456777777777777888999986 799988776665542 1235678888888888777
Q ss_pred HHHHHHHHHHHHHHHHHH---hhccCCCEEEeecChH-----------------HHHHHHHHHHHcCC-ceEEEEcCCCC
Q 006803 471 FINEKIILADKVIVRHAA---TKVRDGDVLLTYGSSC-----------------VVEMILLYAHELGK-QFRVVVVDSRP 529 (630)
Q Consensus 471 fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~S~-----------------tV~~vL~~A~e~gk-~f~ViV~ESRP 529 (630)
|.+. +.+.+..|.. ++-..|..+.-|||+- -|..+|+-.+..|+ .||=+++-..|
T Consensus 291 ~~~~----~~~Sm~rhv~am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdp 366 (552)
T 2fkn_A 291 YVRL----AKQSMKKHVEAMLAFQQKGSIVFDYGNNIRQVAKDEGLENAFDFPGFVPAYIRPLFCEGKGPFRWAALSGDP 366 (552)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTTTCCCEEEEETTCCH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCH
Confidence 7643 4455555433 4445678888888874 23445555555554 36665555554
No 460
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=21.91 E-value=2.4e+02 Score=25.78 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=43.4
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh-HHHHh-ccccEEEE-cceeEecCCceecccchHHHHHHH--HhCCC
Q 006803 522 VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA-VSYIM-HEVTRVFL-GASSVLSNGTTYSRVGTACVAMVA--HAFRV 596 (630)
Q Consensus 522 ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-v~~iM-~~Vd~Viv-GAdaI~aNG~V~NKiGT~~lAlaA--k~~~V 596 (630)
|.|+|-...+ ...+.+.|.+.|+.++++.... ...+. ..+|.+|+ |.. .. ...|.. ..++- ...++
T Consensus 3 i~iid~~~~~-~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~--~~-----~~~~~~-~~~i~~~~~~~~ 73 (189)
T 1wl8_A 3 IVIMDNGGQY-VHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGP--SL-----ENTGNC-EKVLEHYDEFNV 73 (189)
T ss_dssp EEEEECSCTT-HHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCS--CT-----TCCTTH-HHHHHTGGGTCS
T ss_pred EEEEECCCch-HHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCC--Ch-----hhhhhH-HHHHHHHhhCCC
Confidence 5666665555 3456788889999998887543 22332 25888877 332 11 113432 33332 25789
Q ss_pred cEEEecc
Q 006803 597 PVLICCE 603 (630)
Q Consensus 597 PV~V~ae 603 (630)
|++-+|-
T Consensus 74 PilGIC~ 80 (189)
T 1wl8_A 74 PILGICL 80 (189)
T ss_dssp CEEEETH
T ss_pred eEEEEcH
Confidence 9997774
No 461
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=21.91 E-value=39 Score=33.49 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=26.2
Q ss_pred HHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 557 YIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 557 ~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
.+..++|.+++..|... ++- ...+..++.+++||+|...+.
T Consensus 189 ~l~~~~d~i~~~~d~~~-----~~~--~~~i~~~~~~~~iPv~~~~~~ 229 (302)
T 3lkv_A 189 AIAEKSDVIYALIDNTV-----ASA--IEGMIVAANQAKTPVFGAATS 229 (302)
T ss_dssp HHHTTCSEEEECSCHHH-----HHT--HHHHHHHHHHTTCCEEESSHH
T ss_pred hccCCeeEEEEeCCcch-----hhH--HHHHHHHHhhcCCceeecccc
Confidence 34457888887665433 222 344567888999999876443
No 462
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=21.91 E-value=1.6e+02 Score=30.11 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=34.1
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY 549 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 549 (630)
.+..|++||.+|.+++=...+..|+..|- +||+++..+.. ..++++ .|.+..+
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~Vi~~~~~~~~--~~~a~~---lGa~~vi 243 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEAK--REAAKA---LGADEVV 243 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGGG--HHHHHH---HTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHH---cCCcEEe
Confidence 46789999999986544555666666664 68888876543 334444 4655443
No 463
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=21.90 E-value=41 Score=33.75 Aligned_cols=95 Identities=8% Similarity=-0.041 Sum_probs=52.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEE-EcCCCC-CchHHHHHHH--HHhCCCcEEEEcchhHHHHhccccEEEEcce
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVV-VVDSRP-KHEGQALLRR--LLAKGLSCTYTHINAVSYIMHEVTRVFLGAS 570 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~Vi-V~ESRP-~~eG~~La~e--L~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd 570 (630)
..|+.+|.++-+=..+..+..+...++|+ +++..+ ...|..+... +...|+++ ..|- ..++..+|.||
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~--~~dl--~~~l~~~DvVI---- 77 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV--QSSL--DAVKDDFDVFI---- 77 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE--ESCS--TTTTTSCSEEE----
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee--cCCH--HHHhcCCCEEE----
Confidence 46889998776655455443334556755 666544 2223332111 11234443 3332 22334566665
Q ss_pred eEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE 603 (630)
Q Consensus 571 aI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae 603 (630)
++.+.-.++.++..|..+++||++..+
T Consensus 78 ------Dft~p~~~~~~~~~a~~~G~~vVigTt 104 (273)
T 1dih_A 78 ------DFTRPEGTLNHLAFCRQHGKGMVIGTT 104 (273)
T ss_dssp ------ECSCHHHHHHHHHHHHHTTCEEEECCC
T ss_pred ------EcCChHHHHHHHHHHHhCCCCEEEECC
Confidence 222455788899999999999877544
No 464
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=21.86 E-value=81 Score=29.85 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=21.2
Q ss_pred hccCCCEEEeecChH---HHHHHHHHHHHcCCceEE
Q 006803 490 KVRDGDVLLTYGSSC---VVEMILLYAHELGKQFRV 522 (630)
Q Consensus 490 ~I~dgdvILT~g~S~---tV~~vL~~A~e~gk~f~V 522 (630)
-|+.+|++|.+|+|+ .+..+...|+++|..+-+
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIa 109 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSI 109 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEE
Confidence 456778888888777 355566666666654333
No 465
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=21.85 E-value=2.5e+02 Score=26.28 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCC-ceEEEEcCC-----CCCchHHHHH-HHHHhCCCcEEEEcch
Q 006803 505 VVEMILLYAHELGK-QFRVVVVDS-----RPKHEGQALL-RRLLAKGLSCTYTHIN 553 (630)
Q Consensus 505 tV~~vL~~A~e~gk-~f~ViV~ES-----RP~~eG~~La-~eL~~~GI~vTlI~Ds 553 (630)
+++.+...|.+.|. .++|+|--. .-...|++.+ +.|...|+.++.|.|.
T Consensus 77 aa~~~a~~a~e~Gi~~v~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~Dv 132 (151)
T 2xzm_K 77 AAIDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDV 132 (151)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEe
Confidence 35677777888785 467777533 2335688887 9999999999999984
No 466
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=21.80 E-value=3.4e+02 Score=22.81 Aligned_cols=81 Identities=17% Similarity=0.296 Sum_probs=47.5
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCC--cEEEEcch--hHHHHh----------ccccEEEEcceeEecCCceecccc
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGL--SCTYTHIN--AVSYIM----------HEVTRVFLGASSVLSNGTTYSRVG 583 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI~Ds--Av~~iM----------~~Vd~VivGAdaI~aNG~V~NKiG 583 (630)
..++|+|+|..|.. ...|...|.+.|. .+....+. ++.++- ...|.||+..+ +.+ .-|
T Consensus 3 ~~~~ILivddd~~~-~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~-----~~g 74 (152)
T 3heb_A 3 LSVTIVMIEDDLGH-ARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPD-----MTG 74 (152)
T ss_dssp --CEEEEECCCHHH-HHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSS-----SBH
T ss_pred CCceEEEEeCCHHH-HHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCC-----CcH
Confidence 35788888887654 3345577888888 66666553 233331 25788888653 222 224
Q ss_pred hHHHHHHHH---hCCCcEEEeccccc
Q 006803 584 TACVAMVAH---AFRVPVLICCEAYK 606 (630)
Q Consensus 584 T~~lAlaAk---~~~VPV~V~aet~K 606 (630)
--.+..+-+ ..++|+++++....
T Consensus 75 ~~~~~~lr~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 75 IDILKLVKENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp HHHHHHHHHSTTTTTSCEEEEESCCC
T ss_pred HHHHHHHHhcccccCCCEEEEecCCC
Confidence 444444433 35799999987654
No 467
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=21.78 E-value=2e+02 Score=26.27 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=41.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--HHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhC-CC
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--VSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAF-RV 596 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~-~V 596 (630)
+|+|+|..|.. ...|...|...|+.|....+.. +..+-. ..|.|| +.+. -|.-.+..+-+.. ++
T Consensus 2 ~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------lp~~-----~g~~~~~~lr~~~~~~ 69 (223)
T 2hqr_A 2 RVLLIEKNSVL-GGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIKEKHSSI 69 (223)
T ss_dssp CEEEECSCHHH-HHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE------ECCT-----THHHHHHHHHHHCTTS
T ss_pred EEEEEcCCHHH-HHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE------eCCC-----CHHHHHHHHHhCCCCC
Confidence 46777766643 2234466777788887555432 222222 478877 3322 2444444443345 89
Q ss_pred cEEEecccc
Q 006803 597 PVLICCEAY 605 (630)
Q Consensus 597 PV~V~aet~ 605 (630)
||++++...
T Consensus 70 ~ii~lt~~~ 78 (223)
T 2hqr_A 70 VVLVSSDNP 78 (223)
T ss_dssp EEEEEESSC
T ss_pred cEEEEECCC
Confidence 999987653
No 468
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=21.78 E-value=2.4e+02 Score=27.63 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=47.5
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc-cccE
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH-EVTR 564 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~-~Vd~ 564 (630)
..+++|-|.+..+..++....+.| -+|++. .|.+.+.... +...|+.+..+.. ..+-..+. ++..
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~~~--~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 156 (365)
T 3get_A 83 ENIIIGAGSDQVIEFAIHSKLNSK--NAFLQA--GVTFAMYEIY--AKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKL 156 (365)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTT--CEEEEC--SSCCTHHHHH--HHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEE
T ss_pred ceEEECCCHHHHHHHHHHHHhCCC--CEEEEe--CCChHHHHHH--HHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCE
Confidence 456777666655555555443333 355554 3555554333 3345777777752 12222232 4555
Q ss_pred EEEcceeEecCCceecccchHHHHHHHH--hCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAH--AFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk--~~~VPV~V 600 (630)
|++ ...--..|.++..- .+.-+++ .+++.+++
T Consensus 157 v~~-~~p~nptG~~~~~~---~l~~l~~~~~~~~~li~ 190 (365)
T 3get_A 157 IFL-CLPNNPLGECLDAS---EATEFIKGVNEDCLVVI 190 (365)
T ss_dssp EEE-ESSCTTTCCCCCHH---HHHHHHHTSCTTSEEEE
T ss_pred EEE-cCCCCCCCCCcCHH---HHHHHHHhCCCCcEEEE
Confidence 655 22222334444332 2333333 45777766
No 469
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=21.76 E-value=1.3e+02 Score=30.36 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=59.5
Q ss_pred CCCEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhccccEEE
Q 006803 493 DGDVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMHEVTRVF 566 (630)
Q Consensus 493 dgdvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~Vd~Vi 566 (630)
.+.+||..|-++.+= .++..+.++| ..+|+++.-++...- ..|. .+-.++++ .| ..+..++..+|.||
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~----~~l~-~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi 104 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELG-VNQVHVVDNLLSAEK----INVP-DHPAVRFSETSITDDALLASLQDEYDYVF 104 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CSEEEEECCCTTCCG----GGSC-CCTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcC-CceEEEEECCCCCch----hhcc-CCCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence 357899999888664 4444455555 267777764433210 1111 12234444 23 34555666777776
Q ss_pred EcceeEecC-----C---ceecccchHHHHHHHHhC-CCcEEEeccc
Q 006803 567 LGASSVLSN-----G---TTYSRVGTACVAMVAHAF-RVPVLICCEA 604 (630)
Q Consensus 567 vGAdaI~aN-----G---~V~NKiGT~~lAlaAk~~-~VPV~V~aet 604 (630)
--|-....+ - .-+|-.||..+.-+|+.+ ++.-+|.+.+
T Consensus 105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS 151 (377)
T 2q1s_A 105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA 151 (377)
T ss_dssp ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 554322110 0 013667999999999998 8866665554
No 470
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=21.74 E-value=6.4e+02 Score=25.58 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=50.2
Q ss_pred CCEEEeecChHHHHHHHHHHHH-------cCCceEEEEcCCCCCchHHHHH-HHHH-----hCCC-----cEEEEc--c-
Q 006803 494 GDVLLTYGSSCVVEMILLYAHE-------LGKQFRVVVVDSRPKHEGQALL-RRLL-----AKGL-----SCTYTH--I- 552 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e-------~gk~f~ViV~ESRP~~eG~~La-~eL~-----~~GI-----~vTlI~--D- 552 (630)
..+++|-|-+..++.+|+.+.. .|+ -+|++.+ |.+.|..+. ..+. ..|. .+..+. |
T Consensus 115 ~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~-~~vi~~~--~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~ 191 (420)
T 2pb2_A 115 ERVLFMNSGTEANETAFKLARHYACVRHSPFK-TKIIAFH--NAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDL 191 (420)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEET--TCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCH
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCC-CEEEEEe--CCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCH
Confidence 3566776666666666665543 243 3666665 444343221 1221 1221 255553 2
Q ss_pred hhHHHHhc-cccEEEEcceeEecCCce--ecccchHHHHHHHHhCCCcEEE
Q 006803 553 NAVSYIMH-EVTRVFLGASSVLSNGTT--YSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 553 sAv~~iM~-~Vd~VivGAdaI~aNG~V--~NKiGT~~lAlaAk~~~VPV~V 600 (630)
..+-..+. ++..|++ +.+...|++ +..-=--.|+-+|+.|++.+++
T Consensus 192 ~~le~~i~~~~~~vi~--~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~ 240 (420)
T 2pb2_A 192 HAVKAVMDDHTCAVVV--EPIQGEGGVQAATPEFLKGLRDLCDEHQALLVF 240 (420)
T ss_dssp HHHHHHCCTTEEEEEE--CSEETTTTSEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhccCceEEEE--eCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEE
Confidence 23333443 3334433 334444543 2222234567788999998776
No 471
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.70 E-value=1.4e+02 Score=23.83 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=45.3
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH--HHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHh---
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV--SYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA--- 593 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv--~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~--- 593 (630)
.+|+|+|..+.. ...+...|...|+.|....+..- ..+-. ..|.||+..+- .+ ..-|--.+..+-+.
T Consensus 6 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~--~~----~~~g~~~~~~l~~~~~~ 78 (127)
T 2gkg_A 6 KKILIVESDTAL-SATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDL--SA----GQNGYLICGKLKKDDDL 78 (127)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBC--GG----GCBHHHHHHHHHHSTTT
T ss_pred CeEEEEeCCHHH-HHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCC--CC----CCCHHHHHHHHhcCccc
Confidence 478888876643 34455777778888876655322 22222 47888886542 20 12244444444443
Q ss_pred CCCcEEEecccc
Q 006803 594 FRVPVLICCEAY 605 (630)
Q Consensus 594 ~~VPV~V~aet~ 605 (630)
.++|++++ ...
T Consensus 79 ~~~~ii~~-~~~ 89 (127)
T 2gkg_A 79 KNVPIVII-GNP 89 (127)
T ss_dssp TTSCEEEE-ECG
T ss_pred cCCCEEEE-ecC
Confidence 58999998 543
No 472
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold, transferase; 2.10A {Corynebacterium glutamicum}
Probab=21.70 E-value=1.1e+02 Score=32.51 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=40.0
Q ss_pred ccCCCEEEeec--ChHHHHHHHHHHHH---c--CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHH
Q 006803 491 VRDGDVLLTYG--SSCVVEMILLYAHE---L--GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYI 558 (630)
Q Consensus 491 I~dgdvILT~g--~S~tV~~vL~~A~e---~--gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 558 (630)
+.+|.+=+-.. .|...+.++.+|++ . +.++-|=|.=|. +|...+++|.+.||+|.++..-++...
T Consensus 100 ~~~G~VS~EV~prla~d~e~mi~eA~~L~~li~~~nv~IKIP~T~---eGl~A~~~L~~eGI~vNvTliFS~~Qa 171 (360)
T 3r5e_A 100 GYDGRVSIEVDPRISADRDATLAQAKELWAKVDRPNVMIKIPATP---GSLPAITDALAEGISVNVTLIFSVARY 171 (360)
T ss_dssp TSSSEEEEECCGGGTTCHHHHHHHHHHHHHHHCCTTEEEEEESST---THHHHHHHHHHTTCCEEEEEECSHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHhhCCCCeEEEeCCCH---HHHHHHHHHHHcCCceeeeeccCHHHH
Confidence 34564433332 34445566666553 1 334445455553 899999999999999988877555433
No 473
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=21.69 E-value=2.1e+02 Score=26.35 Aligned_cols=81 Identities=10% Similarity=-0.065 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHH-hCCCcEEEEc-chhHHHH--hc--cccEEEEcceeEecCCceecccchHHHHHH
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLL-AKGLSCTYTH-INAVSYI--MH--EVTRVFLGASSVLSNGTTYSRVGTACVAMV 590 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI~-DsAv~~i--M~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAla 590 (630)
+...+|+++|..|.. ...|...|. ..|+.+.... ++.-... +. ..|.||+--+ +.+ .-|--.+..+
T Consensus 5 ~~~~~IlivdD~~~~-~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~--mp~-----~~G~~~~~~l 76 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQ-SRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYS--RIS-----DDVLTDYSSF 76 (225)
T ss_dssp CSSEEEEEESCCSHH-HHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGG--GCC-----HHHHHHHHHH
T ss_pred CCceEEEEEcCcHHH-HHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeCC--CCC-----CCHHHHHHHH
Confidence 456899999988764 233445666 3688886654 3332222 22 5788888542 322 2244444444
Q ss_pred HH--hCCCcEEEecccc
Q 006803 591 AH--AFRVPVLICCEAY 605 (630)
Q Consensus 591 Ak--~~~VPV~V~aet~ 605 (630)
-+ ..++||++++...
T Consensus 77 r~~~~~~~~ii~lt~~~ 93 (225)
T 3klo_A 77 KHISCPDAKEVIINCPQ 93 (225)
T ss_dssp HHHHCTTCEEEEEEECT
T ss_pred HHhhCCCCcEEEEECCc
Confidence 33 4589999987543
No 474
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=21.64 E-value=1.9e+02 Score=28.11 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=42.1
Q ss_pred EEEeecChHHHHHHHHHHHHcCC-ceEEE-EcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc--c
Q 006803 496 VLLTYGSSCVVEMILLYAHELGK-QFRVV-VVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH--E 561 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~gk-~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~ 561 (630)
.||.-|+.+....+|. +.+.|. ..+|. |+-.+|...+...| .+.|||+.++.. ..+...+. +
T Consensus 6 avl~Sg~Gsnl~ali~-~~~~~~l~~eI~~Visn~~~a~v~~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 81 (211)
T 3p9x_A 6 AIFASGSGTNAEAIIQ-SQKAGQLPCEVALLITDKPGAKVVERV---KVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQ 81 (211)
T ss_dssp EEECCTTCHHHHHHHH-HHHTTCCSSEEEEEEESCSSSHHHHHH---HTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCchHHHHHHH-HHHcCCCCcEEEEEEECCCCcHHHHHH---HHcCCCEEEeChhhcCchhhhHHHHHHHHHhcC
Confidence 4566666555555554 555553 23433 33346665544444 457999987753 23444454 6
Q ss_pred ccEEEEcc-eeEec
Q 006803 562 VTRVFLGA-SSVLS 574 (630)
Q Consensus 562 Vd~VivGA-daI~a 574 (630)
+|++|+-+ -.|+.
T Consensus 82 ~Dliv~agy~~Il~ 95 (211)
T 3p9x_A 82 IDFVVLAGYMRLVG 95 (211)
T ss_dssp CCEEEESSCCSCCC
T ss_pred CCEEEEeCchhhcC
Confidence 89988754 35553
No 475
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=21.63 E-value=2.7e+02 Score=28.23 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=27.3
Q ss_pred cc-CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCC
Q 006803 491 VR-DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPK 530 (630)
Q Consensus 491 I~-dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~ 530 (630)
+. .|++||.+|.+++=..++..|+..| .+||+++..+.
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~ 222 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPS 222 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGG
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence 45 7999999997555455666666666 47888887654
No 476
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=21.50 E-value=5.7e+02 Score=24.88 Aligned_cols=98 Identities=10% Similarity=0.115 Sum_probs=49.8
Q ss_pred CEEEeecC-hHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch--------hHHHHhc-cccE
Q 006803 495 DVLLTYGS-SCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN--------AVSYIMH-EVTR 564 (630)
Q Consensus 495 dvILT~g~-S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-~Vd~ 564 (630)
++|+..+. +..+..+|..+.+.| -+|++.+ |..-|..+...+...|+.+..+... .+-..+. ++..
T Consensus 72 ~~i~~~~ggt~al~~~~~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~ 147 (376)
T 3f0h_A 72 KAVFMTCSSTGSMEAVVMNCFTKK--DKVLVID--GGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTG 147 (376)
T ss_dssp EEEEESSCHHHHHHHHHHHHCCTT--CCEEEEE--SSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCE
T ss_pred eEEEEcCChhHHHHHHHHhccCCC--CeEEEEe--CChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceE
Confidence 44443333 334444444443333 3455554 2222444445566678888777421 1222222 3444
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++- ..=-..|.+.. --.|+-+|+.|++++++
T Consensus 148 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 179 (376)
T 3f0h_A 148 LLVN-VDETSTAVLYD---TMMIGEFCKKNNMFFVC 179 (376)
T ss_dssp EEEE-SEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEe-cccCCcceecC---HHHHHHHHHHcCCEEEE
Confidence 4432 22223455444 55678889999998887
No 477
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.50 E-value=1.8e+02 Score=26.17 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=42.5
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHH-HHHHhCCCcEEEEcch
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALL-RRLLAKGLSCTYTHIN 553 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds 553 (630)
-+|.|...-.++..+|..|.+.|. .|+|+=..-.-.-+.-+ .++...|+++..+.|.
T Consensus 81 vvivttddkewikdfieeakergv--evfvvynnkdddrrkeaqqefrsdgvdvrtvsdk 138 (162)
T 2l82_A 81 VVIVTTDDKEWIKDFIEEAKERGV--EVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDK 138 (162)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTC--EEEEEEECSCHHHHHHHHHHHCCSSCEEEEESSH
T ss_pred EEEEecCcHHHHHHHHHHHHhcCc--EEEEEecCCCchhHHHHHHHhhhcCceeeecCCH
Confidence 467888888999999999998775 45555433333344445 8899999999999884
No 478
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=21.49 E-value=89 Score=29.56 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=41.2
Q ss_pred HHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHH----hCCCcEEEec
Q 006803 536 LLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAH----AFRVPVLICC 602 (630)
Q Consensus 536 La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk----~~~VPV~V~a 602 (630)
++..|.+.|++|.++....+.--+...|.||+|+-.. ||.+-..+-.+.--|-.. -.+++|-|++
T Consensus 42 ia~~l~~~g~~v~v~~l~~~~~~l~~~d~vi~g~~Ty--~G~~p~~~~~fl~~L~~~~~~~l~~~~~avfG 110 (191)
T 1bvy_F 42 LADIAMSKGFAPQVATLDSHAGNLPREGAVLIVTASY--NGHPPDNAKQFVDWLDQASADEVKGVRYSVFG 110 (191)
T ss_dssp HHHHHHTTTCCCEEEEGGGSTTCCCSSSEEEEEECCB--TTBCCTTTHHHHHHHHTCCSSCCTTCCEEEEE
T ss_pred HHHHHHhCCCceEEeeHHHhhhhhhhCCeEEEEEeec--CCCcCHHHHHHHHHHHhccchhhCCCEEEEEE
Confidence 3455666788888775544211345689999999875 898776655554444322 2357887764
No 479
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=21.49 E-value=2.3e+02 Score=28.59 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=27.0
Q ss_pred cc-CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCC
Q 006803 491 VR-DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPK 530 (630)
Q Consensus 491 I~-dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~ 530 (630)
+. .|++||.+|.+++=...+..|+..|- +||+++..+.
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga--~Vi~~~~~~~ 215 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAMGH--HVTVISSSNK 215 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCChH
Confidence 45 79999999975544455555666664 7898887764
No 480
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=21.43 E-value=4.1e+02 Score=24.59 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=46.4
Q ss_pred CCCEEEeecChHHH-HHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEE-cc----hhHHHHhc------
Q 006803 493 DGDVLLTYGSSCVV-EMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYT-HI----NAVSYIMH------ 560 (630)
Q Consensus 493 dgdvILT~g~S~tV-~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 560 (630)
.|.+||..|-++-+ ..+.+...++| .+|+++.-++......+..+|...|..+.++ +| ..+..++.
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAG--AKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF 83 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC--CEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35677777776654 44555555555 5677776552334456667787777776655 33 33444444
Q ss_pred -cccEEEEcce
Q 006803 561 -EVTRVFLGAS 570 (630)
Q Consensus 561 -~Vd~VivGAd 570 (630)
.+|.||--|-
T Consensus 84 g~id~vi~~Ag 94 (258)
T 3afn_B 84 GGIDVLINNAG 94 (258)
T ss_dssp SSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 6899887653
No 481
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=21.41 E-value=3.1e+02 Score=27.70 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=33.5
Q ss_pred hccCCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE
Q 006803 490 KVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY 549 (630)
Q Consensus 490 ~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 549 (630)
.+..|++||.+|.+++=...+..|+..|-. +|++++..+.. ..++ .+.|.+.++
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-~Vi~~~~~~~~--~~~~---~~lGa~~vi 242 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAK-RIIAVDLNPDK--FEKA---KVFGATDFV 242 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS-EEEEECSCGGG--HHHH---HHTTCCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCHHH--HHHH---HHhCCceEE
Confidence 467899999999654445555566655532 78888876543 2233 345765443
No 482
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=21.37 E-value=1.5e+02 Score=24.29 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=43.6
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEE-EEcc--hhHHHHhc-cccEEEEcceeEecCCceecccchHHHHHHHH-hC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCT-YTHI--NAVSYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAH-AF 594 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vT-lI~D--sAv~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk-~~ 594 (630)
++|+++|..+.. ...+...|.+.|+.+. ...+ .+...+-. ..|.||+..+- .+ .-|.-.+..+-+ ..
T Consensus 2 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~~~~ 73 (134)
T 3f6c_A 2 LNAIIIDDHPLA-IAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PG-----VNGIQVLETLRKRQY 73 (134)
T ss_dssp EEEEEECCCHHH-HHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SS-----SCHHHHHHHHHHTTC
T ss_pred eEEEEEcCCHHH-HHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC--CC-----CChHHHHHHHHhcCC
Confidence 577888877654 2334567777887765 3333 23333222 58888887543 22 223333333333 34
Q ss_pred CCcEEEeccccc
Q 006803 595 RVPVLICCEAYK 606 (630)
Q Consensus 595 ~VPV~V~aet~K 606 (630)
++|+++++....
T Consensus 74 ~~~ii~~s~~~~ 85 (134)
T 3f6c_A 74 SGIIIIVSAKND 85 (134)
T ss_dssp CSEEEEEECC--
T ss_pred CCeEEEEeCCCC
Confidence 799999876543
No 483
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=21.35 E-value=3.3e+02 Score=26.55 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=40.5
Q ss_pred CCceEEEEcCCCCCchHHHHHHHHHhCCCcEEE---EcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHh
Q 006803 517 GKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTY---THINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA 593 (630)
Q Consensus 517 gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl---I~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~ 593 (630)
...+++++.+ .|..+=...+.++....-.+++ +...-+..+|..+|.+|+-. |+. .+=|-.
T Consensus 236 ~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-------------g~~--~lEA~a 299 (375)
T 3beo_A 236 HEDVQVVYPV-HMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-------------GGV--QEEAPS 299 (375)
T ss_dssp CTTEEEEEEC-CSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-------------HHH--HHHHHH
T ss_pred CCCeEEEEeC-CCCHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-------------CCh--HHHHHh
Confidence 4467766643 3432113344444321125666 44457888899999997643 433 455667
Q ss_pred CCCcEEEe
Q 006803 594 FRVPVLIC 601 (630)
Q Consensus 594 ~~VPV~V~ 601 (630)
+|+||++.
T Consensus 300 ~G~Pvi~~ 307 (375)
T 3beo_A 300 LGVPVLVL 307 (375)
T ss_dssp HTCCEEEC
T ss_pred cCCCEEEe
Confidence 89999986
No 484
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=21.32 E-value=3.3e+02 Score=27.31 Aligned_cols=94 Identities=10% Similarity=0.011 Sum_probs=45.2
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch---------hHHHHhc-cccE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN---------AVSYIMH-EVTR 564 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~Vd~ 564 (630)
+.|+|-+-+..+..+|..+ ..+..-+|++.+ |.+.+.. ..+...|+.+.++... .+-..+. ++..
T Consensus 80 ~~v~~~~Gt~a~~~~l~~~-~~~~gd~vl~~~--~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~ 154 (399)
T 2oga_A 80 HAVGVNSGMDALQLALRGL-GIGPGDEVIVPS--HTYIASW--LAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRA 154 (399)
T ss_dssp EEEEESCHHHHHHHHHHHT-TCCTTCEEEEES--SSCTHHH--HHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEE
T ss_pred eEEEecCHHHHHHHHHHHh-CCCCcCEEEECC--CccHHHH--HHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeE
Confidence 5566544443444444333 112223566654 4555533 3445578888777521 2222332 2333
Q ss_pred EEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 565 VFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 565 VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
|++ . -..|.+.. --.|+-+|+.|++.|++
T Consensus 155 v~~--~--n~tG~~~~---l~~i~~l~~~~~~~li~ 183 (399)
T 2oga_A 155 LLP--V--HLYGHPAD---MDALRELADRHGLHIVE 183 (399)
T ss_dssp ECC--B--CGGGCCCC---HHHHHHHHHHHTCEECE
T ss_pred EEE--e--CCcCCccC---HHHHHHHHHHcCCEEEE
Confidence 331 1 11232221 24677788889988776
No 485
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=21.19 E-value=3.2e+02 Score=26.32 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=42.9
Q ss_pred EEeecChHHHHHHHHHHHHcCCceEEE-EcCCCCCchHHHHHHHHHhCCCcEEEEcc----------hhHHHHhc--ccc
Q 006803 497 LLTYGSSCVVEMILLYAHELGKQFRVV-VVDSRPKHEGQALLRRLLAKGLSCTYTHI----------NAVSYIMH--EVT 563 (630)
Q Consensus 497 ILT~g~S~tV~~vL~~A~e~gk~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~Vd 563 (630)
||..|+.+....+|...++.+-...|. |+-.+|...|...+ .+.|||+.++.. ..+-..+. ++|
T Consensus 6 vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 82 (216)
T 2ywr_A 6 VLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERC---KKHNVECKVIQRKEFPSKKEFEERMALELKKKGVE 82 (216)
T ss_dssp EEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHH---HHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHH---HHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCC
Confidence 444477777777777655443323432 33344555565544 456999987642 33344444 689
Q ss_pred EEEEcc-eeEec
Q 006803 564 RVFLGA-SSVLS 574 (630)
Q Consensus 564 ~VivGA-daI~a 574 (630)
.+|+.+ -.|+.
T Consensus 83 liv~a~y~~il~ 94 (216)
T 2ywr_A 83 LVVLAGFMRILS 94 (216)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEEeCchhhCC
Confidence 888844 35543
No 486
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=21.08 E-value=2.7e+02 Score=25.99 Aligned_cols=97 Identities=11% Similarity=0.086 Sum_probs=53.4
Q ss_pred CEEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhccccEEEEcc
Q 006803 495 DVLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMHEVTRVFLGA 569 (630)
Q Consensus 495 dvILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivGA 569 (630)
.+||..|-++-+= .+++.+.++| .++|+++.-++... ..|...++.+ +..| ..+..++..+|.||.-|
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~G-~~~V~~~~R~~~~~-----~~~~~~~~~~-~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADKQ-TIKQTLFARQPAKI-----HKPYPTNSQI-IMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCT-TEEEEEEESSGGGS-----CSSCCTTEEE-EECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred cEEEEEeCCcHHHHHHHHHHHhCC-CceEEEEEcChhhh-----cccccCCcEE-EEecCCCHHHHHHHhcCCCEEEEcC
Confidence 4788888777664 4444444445 26777765443210 1112223322 2223 45666777888877533
Q ss_pred eeEecCCceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 570 SSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 570 daI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|..-...++-.+.-+++..++.-||...+
T Consensus 97 ------~~~~~~~~~~~~~~~~~~~~~~~iV~iSS 125 (236)
T 3qvo_A 97 ------TGEDLDIQANSVIAAMKACDVKRLIFVLS 125 (236)
T ss_dssp ------CSTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ------CCCchhHHHHHHHHHHHHcCCCEEEEEec
Confidence 11122245666777788888886665544
No 487
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=21.02 E-value=1.2e+02 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=20.5
Q ss_pred cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEe
Q 006803 561 EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLIC 601 (630)
Q Consensus 561 ~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ 601 (630)
.+|+||+|.+.- ...--+.++-.+||+|+
T Consensus 109 ~~dliV~G~~g~------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 109 GYELVVWACYPS------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp CCSEEEECSCCG------------GGTHHHHHHSSSEEEEC
T ss_pred CCCEEEEeCCCC------------chHHHHHHhCCCceEee
Confidence 699999998742 12234566778999986
No 488
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=20.86 E-value=3.8e+02 Score=27.82 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=23.3
Q ss_pred EEEEcceeEecCCceec-ccch-HHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSNGTTYS-RVGT-ACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~N-KiGT-~~lAlaAk~~~VPV~V 600 (630)
..+|=.+-+..+|+++- .-+- -.|+-+|++|++.+++
T Consensus 226 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~ 264 (453)
T 4ffc_A 226 LAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIA 264 (453)
T ss_dssp EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 33333456777776654 3332 3377789999998776
No 489
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.76 E-value=1.9e+02 Score=23.74 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=35.9
Q ss_pred CCE-EEeecChHHHHHHHHHHHHcCCceEEEEcCC-CCCchHHHHHHHHHh----CCCcEEEEcch
Q 006803 494 GDV-LLTYGSSCVVEMILLYAHELGKQFRVVVVDS-RPKHEGQALLRRLLA----KGLSCTYTHIN 553 (630)
Q Consensus 494 gdv-ILT~g~S~tV~~vL~~A~e~gk~f~ViV~ES-RP~~eG~~La~eL~~----~GI~vTlI~Ds 553 (630)
|.. |.+..+...+...+.. ..+.++++|. -|...|..+++.|.+ .++++.++++.
T Consensus 33 ~~~~v~~~~~~~~a~~~l~~-----~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 33 PYAKIKIAYNPFDAGDLLHT-----VKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp TTCEEEEECSHHHHHHHHHH-----TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESS
T ss_pred CccEEEEECCHHHHHHHHHh-----cCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCC
Confidence 444 5555555555444433 3477777775 477889999999987 35777777653
No 490
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=20.72 E-value=3.2e+02 Score=27.34 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=55.2
Q ss_pred CCCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcce--
Q 006803 493 DGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGAS-- 570 (630)
Q Consensus 493 dgdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd-- 570 (630)
.|.+||..|..+....+...+.+.|-. +|+|+. |-......|+.++...| .+..+....+ ..++|.||-..-
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~-~v~v~~-R~~~~a~~la~~~~~~~-~~~~~~~~~l---~~~aDiIInaTp~g 198 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPA-SITVTN-RTFAKAEQLAELVAAYG-EVKAQAFEQL---KQSYDVIINSTSAS 198 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCS-EEEEEE-SSHHHHHHHHHHHGGGS-CEEEEEGGGC---CSCEEEEEECSCCC
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCC-eEEEEE-CCHHHHHHHHHHhhccC-CeeEeeHHHh---cCCCCEEEEcCcCC
Confidence 577899999988888877777766621 455543 32333566777776554 3444332211 145666653110
Q ss_pred ----------eEecCCc-----eecccchHHHHHHHHhCCCc
Q 006803 571 ----------SVLSNGT-----TYSRVGTACVAMVAHAFRVP 597 (630)
Q Consensus 571 ----------aI~aNG~-----V~NKiGT~~lAlaAk~~~VP 597 (630)
..+..|. ++|+..|-.+ -.|+..|+.
T Consensus 199 m~~~~~~l~~~~l~~~~~V~DlvY~P~~T~ll-~~A~~~G~~ 239 (281)
T 3o8q_A 199 LDGELPAIDPVIFSSRSVCYDMMYGKGYTVFN-QWARQHGCA 239 (281)
T ss_dssp C----CSCCGGGEEEEEEEEESCCCSSCCHHH-HHHHHTTCS
T ss_pred CCCCCCCCCHHHhCcCCEEEEecCCCccCHHH-HHHHHCCCC
Confidence 0122232 3677777766 467788887
No 491
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=20.69 E-value=3e+02 Score=26.57 Aligned_cols=96 Identities=6% Similarity=0.026 Sum_probs=48.9
Q ss_pred CEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchh--------HHHHhccccEEE
Q 006803 495 DVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINA--------VSYIMHEVTRVF 566 (630)
Q Consensus 495 dvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--------v~~iM~~Vd~Vi 566 (630)
.+++|.| +......+..+.- .. +|+++..-.+ +..+...+...|+.+.++.... +- +-+++.+|+
T Consensus 63 ~v~~~~g-~t~al~~~~~~l~--~~-~~i~~~~~~~--~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~-~~~~~~~v~ 135 (362)
T 3ffr_A 63 EVLFLAS-ATEIWERIIQNCV--EK-KSFHCVNGSF--SKRFYEFAGELGREAYKEEAAFGKGFYPADIT-VPADAEIIC 135 (362)
T ss_dssp EEEEESC-HHHHHHHHHHHHC--SS-EEEEEECSHH--HHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC-CCTTCCEEE
T ss_pred EEEEeCC-chHHHHHHHHhcc--CC-cEEEEcCcHH--HHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh-ccCCccEEE
Confidence 3555544 4434444444432 22 7666655333 3334455666799888875321 11 112344444
Q ss_pred EcceeEecCCceecccchHHHHHHHHhC-CCcEEEe
Q 006803 567 LGASSVLSNGTTYSRVGTACVAMVAHAF-RVPVLIC 601 (630)
Q Consensus 567 vGAdaI~aNG~V~NKiGT~~lAlaAk~~-~VPV~V~ 601 (630)
+- +-=-..|.+.. --.|+-+|+.| |+.|+|=
T Consensus 136 ~~-~~~nptG~~~~---l~~i~~la~~~p~~~li~D 167 (362)
T 3ffr_A 136 LT-HNETSSGVSMP---VEDINTFRDKNKDALIFVD 167 (362)
T ss_dssp EE-SEETTTTEECC---HHHHTTSGGGSTTSEEEEE
T ss_pred EE-cCCCCcceeCC---HHHHHHHHHhCCCCEEEEe
Confidence 43 22223354443 23466778999 9988873
No 492
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=20.66 E-value=3.4e+02 Score=21.94 Aligned_cols=52 Identities=21% Similarity=0.152 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHH-Hhc--cccEEEEcce
Q 006803 518 KQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSY-IMH--EVTRVFLGAS 570 (630)
Q Consensus 518 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAd 570 (630)
...+|+|+|..+.. ...|...|.+.|+.+....+..-+. .+. ..|.||+..+
T Consensus 5 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 5 QSKRILVVDDDQAM-AAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp --CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESC
T ss_pred CCccEEEEECCHHH-HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecC
Confidence 34678888876654 3334567777888877665533222 222 5788888654
No 493
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=20.63 E-value=3.7e+02 Score=24.63 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=37.9
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCcEEEEcch----hHHHHhcccc---EEEEcceeEecCCceecccchHHHHHH-HH
Q 006803 521 RVVVVDSRPKHEGQALLRRLLAKGLSCTYTHIN----AVSYIMHEVT---RVFLGASSVLSNGTTYSRVGTACVAMV-AH 592 (630)
Q Consensus 521 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----Av~~iM~~Vd---~VivGAdaI~aNG~V~NKiGT~~lAla-Ak 592 (630)
+|.|+|.--. --..+++.|.+.|+.++++... .+...+...+ .||.|--.. ....|.. .+++ +-
T Consensus 2 ~i~iiDn~~s-~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~------~~~~~~~-~~l~~~~ 73 (192)
T 1i1q_B 2 DILLLDNIDS-FTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGV------PSEAGCM-PELLTRL 73 (192)
T ss_dssp EEEEEECSCS-SHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSC------GGGSTTH-HHHHHHH
T ss_pred cEEEEECCcc-HHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcC------chhCchH-HHHHHHH
Confidence 4556662111 1345578888999999988754 2222233223 555542111 1223322 2233 22
Q ss_pred hCCCcEEEec
Q 006803 593 AFRVPVLICC 602 (630)
Q Consensus 593 ~~~VPV~V~a 602 (630)
..++||+=+|
T Consensus 74 ~~~~PilGIC 83 (192)
T 1i1q_B 74 RGKLPIIGIC 83 (192)
T ss_dssp BTTBCEEEET
T ss_pred hcCCCEEEEC
Confidence 4689999665
No 494
>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}
Probab=20.60 E-value=1.4e+02 Score=30.81 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=57.7
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCch--HHHHHHHHHh-----------CCCcEEEEcc----hhHH
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHE--GQALLRRLLA-----------KGLSCTYTHI----NAVS 556 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~e--G~~La~eL~~-----------~GI~vTlI~D----sAv~ 556 (630)
+.+||..|-++.+=.-|.... .....+|+++.-++... -.++...|.. .++.+.. .| ..+.
T Consensus 69 ~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~-~Dl~d~~~l~ 146 (427)
T 4f6c_A 69 LGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIV-GDFECMDDVV 146 (427)
T ss_dssp CEEEEEECTTSHHHHHHHHHH-TTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEE-ECC---CCCC
T ss_pred CCEEEEecCCcHHHHHHHHHH-HcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEe-CCCCCcccCC
Confidence 458999998887755554444 33457888886555421 2233333322 3333222 22 2222
Q ss_pred HHhccccEEEEcceeEecCC-----ceecccchHHHHHHHHhCCCcEEEecccccc
Q 006803 557 YIMHEVTRVFLGASSVLSNG-----TTYSRVGTACVAMVAHAFRVPVLICCEAYKF 607 (630)
Q Consensus 557 ~iM~~Vd~VivGAdaI~aNG-----~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf 607 (630)
.+..+|.||--|-.+-... --+|-.||..++-+|+. ++.-+|.+.+...
T Consensus 147 -~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~ 200 (427)
T 4f6c_A 147 -LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV 200 (427)
T ss_dssp -CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG
T ss_pred -CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh
Confidence 3345565554332211111 12377899999999988 5555555555443
No 495
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=20.57 E-value=1.8e+02 Score=28.19 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=55.7
Q ss_pred EEEeecChHHHH-HHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc----hhHHHHhc--cccEEEEc
Q 006803 496 VLLTYGSSCVVE-MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI----NAVSYIMH--EVTRVFLG 568 (630)
Q Consensus 496 vILT~g~S~tV~-~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~--~Vd~VivG 568 (630)
+||..|-++.+= .++..+.++| .+|+++.-.+...- ..|. .++.+. ..| ..+..++. .+|.||--
T Consensus 3 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~----~~~~-~~~~~~-~~D~~~~~~~~~~~~~~~~d~vih~ 74 (330)
T 2c20_A 3 SILICGGAGYIGSHAVKKLVDEG--LSVVVVDNLQTGHE----DAIT-EGAKFY-NGDLRDKAFLRDVFTQENIEAVMHF 74 (330)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCG----GGSC-TTSEEE-ECCTTCHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHhCC--CEEEEEeCCCcCch----hhcC-CCcEEE-ECCCCCHHHHHHHHhhcCCCEEEEC
Confidence 688888877664 4444555555 56777653322110 1111 144332 233 34556666 67777665
Q ss_pred ceeEecCC--------ceecccchHHHHHHHHhCCCcEEEeccc
Q 006803 569 ASSVLSNG--------TTYSRVGTACVAMVAHAFRVPVLICCEA 604 (630)
Q Consensus 569 AdaI~aNG--------~V~NKiGT~~lAlaAk~~~VPV~V~aet 604 (630)
|-...... --+|-.||..+.-+|+..++.-+|.+.+
T Consensus 75 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 118 (330)
T 2c20_A 75 AADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118 (330)
T ss_dssp CCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 43221100 0136689999999999999876665544
No 496
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=20.56 E-value=4.4e+02 Score=26.10 Aligned_cols=36 Identities=6% Similarity=0.080 Sum_probs=20.8
Q ss_pred EEEEcceeEecC-Cceecccc-hHHHHHHHHhCCCcEEE
Q 006803 564 RVFLGASSVLSN-GTTYSRVG-TACVAMVAHAFRVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aN-G~V~NKiG-T~~lAlaAk~~~VPV~V 600 (630)
++|+ ...+..+ |.++..-+ --.|+-+|+.||+.++|
T Consensus 187 ~~v~-~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~ 224 (395)
T 1vef_A 187 AAVI-LEPVQGEGGVRPATPEFLRAAREITQEKGALLIL 224 (395)
T ss_dssp EEEE-ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEE-EeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4444 3344433 44444333 34577788999998876
No 497
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.44 E-value=3.5e+02 Score=26.47 Aligned_cols=100 Identities=22% Similarity=0.232 Sum_probs=52.5
Q ss_pred CCEEEeecChHHHHHHHHHHHHcCCceEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcc--------hhHHHHhc--ccc
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHI--------NAVSYIMH--EVT 563 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd 563 (630)
..+++|-|.+..+..++....+.| -+|++.+ |.+.|.. ..+...|+.+..+.. ..+-..+. ++.
T Consensus 86 ~~i~~~~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 159 (367)
T 3euc_A 86 MEVLLGNGSDEIISMLALAAARPG--AKVMAPV--PGFVMYA--MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPA 159 (367)
T ss_dssp CEEEEEEHHHHHHHHHHHHTCCTT--CEEEEEE--SCSCCSC--HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCS
T ss_pred ceEEEcCCHHHHHHHHHHHHcCCC--CEEEEcC--CCHHHHH--HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCC
Confidence 456777666666555555443333 3455543 3333322 224567888877752 22333333 466
Q ss_pred EEEEcceeEecCCceecccchHHHHHHHHhC--CCcEEE
Q 006803 564 RVFLGASSVLSNGTTYSRVGTACVAMVAHAF--RVPVLI 600 (630)
Q Consensus 564 ~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~--~VPV~V 600 (630)
.|++- ..-...|.++..---..++-+|+.| |+.+++
T Consensus 160 ~v~~~-~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~ 197 (367)
T 3euc_A 160 IVYLA-YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV 197 (367)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEE
T ss_pred EEEEc-CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEE
Confidence 67662 2222334444433334556668888 888776
No 498
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=20.37 E-value=3.2e+02 Score=24.97 Aligned_cols=58 Identities=10% Similarity=0.029 Sum_probs=41.3
Q ss_pred EEEeecChHHHHHHHHHHHHc--------CCceEEEEcCC-CCCchHHHHHHHHHh------CCCcEEEEcch
Q 006803 496 VLLTYGSSCVVEMILLYAHEL--------GKQFRVVVVDS-RPKHEGQALLRRLLA------KGLSCTYTHIN 553 (630)
Q Consensus 496 vILT~g~S~tV~~vL~~A~e~--------gk~f~ViV~ES-RP~~eG~~La~eL~~------~GI~vTlI~Ds 553 (630)
.|.+..+...++..|...... +..+.++++|- -|...|..+++.|.+ ..+++.+++..
T Consensus 88 ~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 88 EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECC
Confidence 677777777777666653211 24688888874 588899999988876 46888888754
No 499
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=20.25 E-value=2.8e+02 Score=28.65 Aligned_cols=101 Identities=11% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCEEEeecChHHHHHHHHHHHHcC-CceEEEEcCCCCCchHHHHH--HHHHhCCCcE-----EEEcc--------hhHHH
Q 006803 494 GDVLLTYGSSCVVEMILLYAHELG-KQFRVVVVDSRPKHEGQALL--RRLLAKGLSC-----TYTHI--------NAVSY 557 (630)
Q Consensus 494 gdvILT~g~S~tV~~vL~~A~e~g-k~f~ViV~ESRP~~eG~~La--~eL~~~GI~v-----TlI~D--------sAv~~ 557 (630)
+.+++|-|.+..+..++....+.| ...+|++.+ |.+-+.... ..+...|+.+ .++.. ..+-.
T Consensus 129 ~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~--~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~ 206 (465)
T 3e9k_A 129 KEIALMNALTVNLHLLMLSFFKPTPKRYKILLEA--KAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILE 206 (465)
T ss_dssp GGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEET--TCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHhccccCCCCEEEEcC--CcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHH
Confidence 466776665555555555443333 234455543 555554443 2455577763 23321 23333
Q ss_pred Hhc----cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEE
Q 006803 558 IMH----EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600 (630)
Q Consensus 558 iM~----~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V 600 (630)
.+. ++ ++|+-+..=...|.+.. -..|+-+|+.||+.|++
T Consensus 207 ~i~~~~~~~-~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~ 249 (465)
T 3e9k_A 207 VIEKEGDSI-AVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGF 249 (465)
T ss_dssp HHHHHGGGE-EEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEE
T ss_pred HHHhcCCCe-EEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEE
Confidence 442 33 33333333333454443 25677789999998876
No 500
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=20.19 E-value=3.3e+02 Score=21.68 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCcEEEEcchhH--HHHhc-cccEEEEcceeEecCCceecccchHHHHHHHHhCCC
Q 006803 520 FRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAV--SYIMH-EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRV 596 (630)
Q Consensus 520 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv--~~iM~-~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~V 596 (630)
.+|+++|..|.. ...+...|...|+.+....+..- ..+.. ..|.||+..+ +.+. -|.-.+..+-...++
T Consensus 4 ~~ilivdd~~~~-~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 75 (123)
T 1xhf_A 4 PHILIVEDELVT-RNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGK-----NGLLLARELREQANV 75 (123)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSS-----CHHHHHHHHHHHCCC
T ss_pred ceEEEEeCCHHH-HHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCC-----CHHHHHHHHHhCCCC
Confidence 467777766543 23344666677887765554322 22222 4788887543 2221 243344444444789
Q ss_pred cEEEecccc
Q 006803 597 PVLICCEAY 605 (630)
Q Consensus 597 PV~V~aet~ 605 (630)
|+++++...
T Consensus 76 ~ii~~s~~~ 84 (123)
T 1xhf_A 76 ALMFLTGRD 84 (123)
T ss_dssp EEEEEESCC
T ss_pred cEEEEECCC
Confidence 999886553
Done!