RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 006803
(630 letters)
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family. This family
includes initiation factor 2B alpha, beta and delta
subunits from eukaryotes, initiation factor 2B subunits
1 and 2 from archaebacteria and some proteins of unknown
function from prokaryotes. Initiation factor 2 binds to
Met-tRNA, GTP and the small ribosomal subunit. Members
of this family have also been characterized as
5-methylthioribose- 1-phosphate isomerases, an enzyme of
the methionine salvage pathway. The crystal structure of
Ypr118w, a non-essential, low-copy number gene product
from Saccharomyces cerevisiae, reveals a dimeric protein
with two domains and a putative active site cleft.
Length = 281
Score = 228 bits (583), Expect = 4e-70
Identities = 89/240 (37%), Positives = 131/240 (54%), Gaps = 5/240 (2%)
Query: 383 VTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIR 442
V G A IA L VI D TP V +L ++ S + FLI RP ++S+GNAI
Sbjct: 2 VRGSPAIAIAALEGLLLVIQDARTPT----VAELKEQLRSAIEFLISARPTAVSLGNAID 57
Query: 443 FQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGS 502
I++L + EAK +L D FI+E I A + I AA ++DGD +LT+ +
Sbjct: 58 RLLRIISELHSSSDVEEAKESLIEAADEFIDE-IEEARRKIGAIAAELIKDGDTILTHCN 116
Query: 503 SCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEV 562
S V +L AH+ GK+FRV+V +SRP+ +G+ + L+ G+ T +AV Y+M EV
Sbjct: 117 SGTVLGVLRAAHKEGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDSAVGYVMQEV 176
Query: 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELG 622
+V +GA +L+NG +++GT +A++A A VP + E YKF R LD E
Sbjct: 177 DKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEER 236
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B
alpha/beta/delta family [Translation, ribosomal
structure and biogenesis].
Length = 301
Score = 190 bits (485), Expect = 1e-55
Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 9/255 (3%)
Query: 368 HPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFL 427
P V + + + ++ G + IA A + + +D P V +L I L
Sbjct: 3 MPEVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQAPT----VEELIDAIRELSETL 58
Query: 428 IECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHA 487
++ RP ++S+GN IRF + + + + +L FI+ + A + I
Sbjct: 59 VKARPTAVSLGNLIRF----VLRDSSGGDKENRRQSLIKAAQEFIDR-VEKAKERIAEIG 113
Query: 488 ATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSC 547
A ++ DGDV+LT+ S V +L A + GK+F+V+V +SRP+ EG+ + + L G+
Sbjct: 114 AERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPV 173
Query: 548 TYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKF 607
T +AV M V +V +GA ++L+NG +++GT+ +A+ A RVP + E+YKF
Sbjct: 174 TVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYKF 233
Query: 608 HERVQLDSICSNELG 622
+ LD++ EL
Sbjct: 234 VPKTLLDTLVEIELR 248
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit
delta; Provisional.
Length = 310
Score = 116 bits (292), Expect = 1e-28
Identities = 63/226 (27%), Positives = 116/226 (51%), Gaps = 14/226 (6%)
Query: 386 GNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQK 445
G R IA RA E + D + + A++ + + LI RP ++S+ NA+R+
Sbjct: 21 GAGR-IA--RAAAEALKDQAEKSDAESPEEFKAEMRAAANILISTRPTAVSLPNAVRYVM 77
Query: 446 SRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHA---ATKVRDGDVLLTYGS 502
+ + EA+ ++ + FI ++ + + A ++RDGDV++T+ +
Sbjct: 78 RYYSGE----TVEEARESVIERAEEFIES----SENAVEKIGEIGAKRIRDGDVIMTHCN 129
Query: 503 SCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEV 562
S ++ AHE GK V+ ++RP+++G + L G+ T +AV Y M +V
Sbjct: 130 SSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDV 189
Query: 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFH 608
+V +GA ++ +NG +++GT+ +A+ AH RVP ++ E YKF
Sbjct: 190 DKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETYKFS 235
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2
family. The delineation of this family was based
originally, in part, on a discussion and
neighbor-joining phylogenetic study by Kyrpides and
Woese of archaeal and other proteins homologous to the
alpha, beta, and delta subunits of eukaryotic initiation
factor 2B (eIF-2B), a five-subunit molecule that
catalyzes GTP recycling for eIF-2. Recently, Sato, et
al. assigned the function ribulose-1,5 bisphosphate
isomerase [Energy metabolism, Other].
Length = 301
Score = 107 bits (270), Expect = 7e-26
Identities = 59/217 (27%), Positives = 108/217 (49%), Gaps = 11/217 (5%)
Query: 395 RAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLT 454
RA + + + + A++ + + LI RP ++S+ NA+R+ ++
Sbjct: 22 RAAAAALREQAEKSDAASPEEFRAEMRAAANILISTRPTAVSLPNALRYVLKYMS----G 77
Query: 455 LSETEAKAALCNDIDRFINEKIILADKVIVR---HAATKVRDGDVLLTYGSSCVVEMILL 511
+ ++ D FIN ++K R A ++RDGDV++T+ +S ++
Sbjct: 78 ADVETLRQSVIERADEFINR----SEKAQERIGEIGAKRIRDGDVIMTHCNSEAALSVIK 133
Query: 512 YAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASS 571
A E GK V+V ++RP+++G + L G+ T +A Y M EV V +GA +
Sbjct: 134 TAFEQGKDIEVIVTETRPRNQGHITAKELRDYGIPVTLIVDSAARYYMKEVDHVVVGADA 193
Query: 572 VLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFH 608
+ +NG +++GT+ +A+ A RVP ++ E YKFH
Sbjct: 194 ITANGAVINKIGTSQLALAAREARVPFMVAAETYKFH 230
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related
uncharacterized proteins. This model, eIF-2B_rel,
describes half of a superfamily, where the other half
consists of eukaryotic translation initiation factor 2B
(eIF-2B) subunits alpha, beta, and delta. It is unclear
whether the eIF-2B_rel set is monophyletic, or whether
they are all more closely related to each other than to
any eIF-2B subunit because the eIF-2B clade is highly
derived. Members of this branch of the family are all
uncharacterized with respect to function and are found
in the Archaea, Bacteria, and Eukarya, although a number
are described as putative translation intiation factor
components. Proteins found by eIF-2B_rel include at
least three clades, including a set of uncharacterized
eukaryotic proteins, a set found in some but not all
Archaea, and a set universal so far among the Archaea
and closely related to several uncharacterized bacterial
proteins [Unknown function, General].
Length = 303
Score = 77.9 bits (192), Expect = 1e-15
Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 17/198 (8%)
Query: 426 FLIECRPLSMSMGNAIRFQKSRIAK-LPLTLSETEAKAALCNDIDRFINEKIILADKVIV 484
FL+ RP ++++ A+ R+ S EAK +L + I E + ++ I
Sbjct: 55 FLLSTRPTAVNLFWAL----ERVLNSAENGESVEEAKESLLREAIEIIEEDL-ETNRKIG 109
Query: 485 RHAATKVRDGDVLLTY---GSSCVVEM-----ILLYAHELGKQFRVVVVDSRPKHEGQAL 536
+ A ++DGD +LT+ G+ + ++ A E GK+ RV+ ++RP+++G L
Sbjct: 110 ENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRIRVIACETRPRNQGSRL 169
Query: 537 -LRRLLAKGLSCTYTHINAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA 593
L+ G+ T + +Y M E+ V +GA + NG +++GT +A++A
Sbjct: 170 TAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKE 229
Query: 594 FRVPVLICCEAYKFHERV 611
FR+P + F +
Sbjct: 230 FRIPFFVAAPLSTFDTKT 247
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit
alpha; Validated.
Length = 275
Score = 70.2 bits (172), Expect = 3e-13
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 427 LIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRH 486
+ E P S+ N RF +P+T + E + + R + E A + I
Sbjct: 55 IPEVNPTMASLYNLARF-------IPIT-NNPELVKSRAEEFLRLMEE----AKREIGNI 102
Query: 487 AATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS 546
+ + DGDV++T+ S V IL A GK+F+V++ +S P +EG AL L G+
Sbjct: 103 GSELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIE 162
Query: 547 CTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606
+ E T +GA +V +G ++ GT +A+ H VP + E +K
Sbjct: 163 FEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETFK 222
Query: 607 FHERVQ 612
FH ++
Sbjct: 223 FHPELK 228
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate
isomerase. The delineation of this family was based in
part on a discussion and neighbor-joining phylogenetic
study, by Kyrpides and Woese, of archaeal and other
proteins homologous to the alpha, beta, and delta
subunits of eukaryotic initiation factor 2B (eIF-2B), a
five-subunit molecule that catalyzes GTP recycling for
eIF-2. This clade is now recognized to include the
methionine salvage pathway enzyme MtnA [Amino acid
biosynthesis, Aspartate family].
Length = 331
Score = 54.9 bits (133), Expect = 4e-08
Identities = 47/210 (22%), Positives = 96/210 (45%), Gaps = 33/210 (15%)
Query: 413 VRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFI 472
+ A + + +L+ RP ++++ A+ ++ + + + K AL + +R I
Sbjct: 66 REEFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALEAAK---TVADIKEALLAEAER-I 121
Query: 473 NEKIILADKVIVRHAATKVRDGD----VLLT-----------YGSSCVVEMILLYAHELG 517
E+ + ++ I + A ++ G +LT YG++ V + AHE G
Sbjct: 122 LEEDLEDNRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGV---IRSAHEKG 178
Query: 518 KQFRVVVVDSRPKHEGQALLRRLLA-----KGLSCTYTHINAVSYIMH--EVTRVFLGAS 570
+ V ++RP+ +G RL A +G+ T + +++M EV V +GA
Sbjct: 179 RLEHVYADETRPRLQGA----RLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGAD 234
Query: 571 SVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600
+ +NG T +++GT +A++A VP +
Sbjct: 235 RIAANGDTANKIGTYQLAVLAKHHGVPFYV 264
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B
subunit, eIF-2B alpha/beta/delta family [Translation,
ribosomal structure and biogenesis].
Length = 346
Score = 51.5 bits (124), Expect = 7e-07
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 472 INEKIILADKVIVRHAATKVRDGDVLLTY---GSSCVVEM-----ILLYAHELGKQFRVV 523
I E+ + A++ I + A + DGD +LT+ G+ V ++ AHE GK RV
Sbjct: 128 IAEEDLEANRAIGENGAELLPDGDTVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVF 187
Query: 524 VVDSRPKHEGQALLRRLLAK-GLSCTYTHINAVSYIMH--EVTRVFLGASSVLSNGTTYS 580
++RP +G L L + G+ T NA ++M + V +GA + +NG +
Sbjct: 188 ADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVAN 247
Query: 581 RVGTACVAMVAHAFRVP 597
++GT +A++A +P
Sbjct: 248 KIGTYQLAVLAKHHGIP 264
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit
alpha; Provisional.
Length = 363
Score = 49.8 bits (119), Expect = 2e-06
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 454 TLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTY--------GSSCV 505
S E L + + E+ A+ + + K+ DGD +LT G+
Sbjct: 128 AKSVNELIELLKVEAKKIFEEEY-DAEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLG 186
Query: 506 VEMILLY-AHELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHINAVSYIMHE-- 561
+ + A LG V+ ++RP +G L + L+ +G+ T AV +M++
Sbjct: 187 TALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYKDM 246
Query: 562 VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVP 597
V V +GA +L +G ++++GT A++AH +P
Sbjct: 247 VNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIP 282
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit
delta; Provisional.
Length = 253
Score = 44.1 bits (104), Expect = 1e-04
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Query: 472 INEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKH 531
+ I +K+ + HA D V+ T SS V++ + + ++ V +++SRP
Sbjct: 66 LKLGIEKHEKMAIEHAKPLFND-SVIGTISSSQVLKAFISSSEKIK---SVYILESRPML 121
Query: 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVA 591
EG + + L+ G+ ++ + V V +G+ SVL +G + GT +A+ A
Sbjct: 122 EGIDMAKLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCA 181
Query: 592 HAFRVPVLICCEAYKFHE 609
+ P + K
Sbjct: 182 RYLKKPFYSLTISMKIER 199
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.
Length = 344
Score = 42.1 bits (100), Expect = 6e-04
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 447 RIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLT------- 499
R+ ++ L E KAAL + I+E+ + ++ I H T +R G +LT
Sbjct: 101 RMREVLAPLPGAERKAALEEEAIE-IHEEDVEINRAIGEHGLTLIRKGQGILTHCNAGWL 159
Query: 500 ----YGSSCVVEMILLY-AHELGKQFRVVVVDSRPKHEGQALLRRLLAK-GLSCTYTHIN 553
YG++ +Y A E G V ++RP+ +G L L + G+ T N
Sbjct: 160 ATAGYGTALAP----IYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDN 215
Query: 554 AVSYIM--HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVP 597
+++M ++ V +GA + +NG +++GT +A+ A VP
Sbjct: 216 MAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVP 261
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit
alpha; Provisional.
Length = 329
Score = 41.4 bits (97), Expect = 0.001
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 431 RPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATK 490
RP + + AIR+ S +E + AA R+ E II K I +
Sbjct: 89 RPTAYDLFKAIRYMNS---------NEFDMNAA-----RRYAME-IIGRSKKIGEYGNEL 133
Query: 491 VRDGDVLLTY---GSSCVVE-----MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLA 542
+++G +LT+ G+ VV+ + AH GK V V ++RP+ +G L LA
Sbjct: 134 IKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELA 193
Query: 543 K-GLSCTYTHINAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVP 597
+ G+ NA Y M E+ V +GA + SNG +++GT A++A +P
Sbjct: 194 QEGIDHAIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIP 251
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit
alpha; Provisional.
Length = 339
Score = 38.9 bits (91), Expect = 0.006
Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 29/218 (13%)
Query: 391 IAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAK 450
A L ++V L++DL L RP ++++ + R+ K
Sbjct: 62 AARLSKAKDV---------DELLKDLKVA----AETLKSTRPTAVNLSWGV----DRVLK 104
Query: 451 LPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSS----CV- 505
L + E + I E+ + +K+I +H A + DGD +LT+ ++ CV
Sbjct: 105 AALDAEDVEEIRDIALREAERIAEEDVARNKLIGKHGAKLLEDGDTVLTHCNAGRLACVD 164
Query: 506 ---VEMILLYAHELGKQFRVVVVDSRPKHEGQALLR-RLLAKGLSCTYTHINAVSYIMHE 561
++ A E GK+ +V+ ++RP ++G L L+ + T + +M +
Sbjct: 165 WGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQ 224
Query: 562 --VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVP 597
V +V +GA + + ++++GT +++A +P
Sbjct: 225 GMVDKVIVGADRITRD-AVFNKIGTYTHSVLAKEHEIP 261
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 39.1 bits (92), Expect = 0.007
Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 13/165 (7%)
Query: 168 RGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSN 227
RGGGAA + + A + +A A Q Q AA+AA ++
Sbjct: 59 RGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA 118
Query: 228 TLKAKTTKAERRETQEAQRAA-----KAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDP 282
+ A+ RE +E AA + AG+ A A + + R
Sbjct: 119 A--SAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRG 176
Query: 283 AVGSTIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKR 327
DR+ ER R+++ D + R + +R
Sbjct: 177 DRE------DRQAEAERGERGRREERGRDGDDRDRRDRREQGDRR 215
Score = 34.9 bits (81), Expect = 0.14
Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 9/167 (5%)
Query: 158 EGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGV 217
++ E GAA + +A+ AER +E + +
Sbjct: 127 ARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAE 186
Query: 218 EVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQ 277
+RR+ +E + G+ G + ++
Sbjct: 187 RGERGRREER--GRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNR 244
Query: 278 NRDDPAVGSTIAGSDRRGGDRPPERERK-------KDVPPPRMQFDD 317
G G R G R +R+R+ + P ++ DD
Sbjct: 245 EDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
Score = 33.3 bits (77), Expect = 0.42
Identities = 18/145 (12%), Positives = 35/145 (24%)
Query: 163 EAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNR 222
+A R G A + + R E + + + G
Sbjct: 126 QARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEA 185
Query: 223 ESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDP 282
E + + + + +R + +G + G R + +
Sbjct: 186 ERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNRE 245
Query: 283 AVGSTIAGSDRRGGDRPPERERKKD 307
G G R R R +D
Sbjct: 246 DRGDRDGDDGEGRGGRRGRRFRDRD 270
Score = 33.3 bits (77), Expect = 0.48
Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 14/166 (8%)
Query: 155 TQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGG 214
Q E EA + A +++ A + A+ R +E AA+ K G
Sbjct: 88 RQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGE 147
Query: 215 GGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQ 274
GG + + A R +E + + G + + A G G R
Sbjct: 148 GGEQPATEARAD---------AAERTEEEERDERRRRGDREDRQAEAERGERGRRE-ERG 197
Query: 275 PSQNRDDPAVGSTIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGR 320
+ D + R+ R + R
Sbjct: 198 RDGDDRDRRDR----REQGDRREERGRRDGGDRRGRRRRRDRRDAR 239
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 35.3 bits (81), Expect = 0.099
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 179 EVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAER 238
+ + A+A KA A ++A+ AAKAA + K + + A+ KAE
Sbjct: 152 AKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEA 211
Query: 239 RETQEAQRAAKAAGKAQGNKPVAAA 263
+A++ A+AA + + A
Sbjct: 212 EAKAKAEKKAEAAAEEKAAAEKKKA 236
Score = 34.9 bits (80), Expect = 0.12
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 156 QLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGG 215
QLE K+ E E+ AA E + ++ AKA A+ +A EA++ A+ A K
Sbjct: 128 QLEQKQQE---EQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAA---- 180
Query: 216 GVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGA 266
E ++ + K K + ++A+ A+A KA+ AA A
Sbjct: 181 --EEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKA 229
Score = 30.7 bits (69), Expect = 2.4
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 158 EGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKA--ATKGKGGGG 215
E K +A E A ++ AKAK A + EA+ A A A
Sbjct: 159 EAAKLKAAAEAKKKAEEAA---KAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKA 215
Query: 216 GVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGK 253
E ++ A+ KA + + AA A +
Sbjct: 216 KAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAE 253
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 34.5 bits (79), Expect = 0.17
Identities = 15/70 (21%), Positives = 27/70 (38%)
Query: 185 AKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEA 244
A K KA ++A ++A +AA A KG + ++ + A + + +
Sbjct: 259 ALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKR 318
Query: 245 QRAAKAAGKA 254
K A K
Sbjct: 319 GAKGKKAKKV 328
Score = 32.9 bits (75), Expect = 0.46
Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 16/141 (11%)
Query: 155 TQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGG 214
KK P GA +S+ AK+ K ++ + +AK A K
Sbjct: 195 GAANAKKAAKTPAAKSGAKK------ASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKA 248
Query: 215 GGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQ 274
+ T K KA + + A++AAKAA KA AA G ++
Sbjct: 249 AK-------KAKKTAKKALKKAAKAVKKAAKKAAKAAAKA---AKGAAKATKGKAKAKKK 298
Query: 275 PSQNRDDPAVGSTIAGSDRRG 295
+ + A + +RG
Sbjct: 299 AGKKAAAGSKAKATAKAPKRG 319
Score = 32.6 bits (74), Expect = 0.56
Identities = 20/94 (21%), Positives = 35/94 (37%)
Query: 160 KKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEV 219
K A + + + A KA ++A + A +AAK A K G +
Sbjct: 238 AKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKK 297
Query: 220 NNRESSSNTLKAKTTKAERRETQEAQRAAKAAGK 253
+ ++ KAK T + + ++A K K
Sbjct: 298 KAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKK 331
Score = 30.6 bits (69), Expect = 2.6
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 3/127 (2%)
Query: 179 EVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAER 238
+ ++A +A+ AAK +K K V + + ++ T KA++
Sbjct: 198 NAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAV---SAKKAAKTAAKAAKKAKK 254
Query: 239 RETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSDRRGGDR 298
+ ++AAKA KA AAA A + A AGS + +
Sbjct: 255 TAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAK 314
Query: 299 PPERERK 305
P+R K
Sbjct: 315 APKRGAK 321
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 34.1 bits (78), Expect = 0.22
Identities = 27/166 (16%), Positives = 43/166 (25%), Gaps = 26/166 (15%)
Query: 151 MENFTQLEGKKPEAVPERGG----GAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKA 206
+ K + G +V E K K +R+ +EA+
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Query: 207 ATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGA 266
K K K K + R +E +R A P
Sbjct: 144 KEKEKE-----------------KEKKVEEPRDREEEKKRERVRAKSRPKKPP-----KK 181
Query: 267 GPGNILRQPSQNRDDPAVGSTIAGSDRRGGDRPPERERKKDVPPPR 312
P N ++P + D ERE+++D R
Sbjct: 182 KPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDR 227
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 33.5 bits (77), Expect = 0.31
Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 12/123 (9%)
Query: 185 AKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTT-------KAE 237
A+ T +E+RA Q K E++ + L+A + AE
Sbjct: 185 AELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244
Query: 238 RRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSDRRGGD 297
+ + AA A A + A P + + ST RG
Sbjct: 245 AAAAKAREAAAAAEAAAARARAAEAKRTGETYKP-TAPEKML----ISSTGGFGALRGQL 299
Query: 298 RPP 300
P
Sbjct: 300 AWP 302
>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein.
Length = 568
Score = 33.3 bits (76), Expect = 0.39
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 167 ERGGGAAVEVHNEVSSSTAKAKTTKAER-RAMQEAQRAAKAATKGKGGGGGVEVNNRESS 225
R G A + + V ++ +A+++ E A A +AA +A+
Sbjct: 211 NRFKGYADSMTSSVEAAKGQAESSSKEANTAGDYATKAAASASAAHASEVNAA------- 263
Query: 226 SNTLKAKTTKAERRETQEAQRAAKAAGK 253
N+ A T A R + Q+A RA A K
Sbjct: 264 -NSATAAATSANRAK-QQADRAKTEADK 289
Score = 32.6 bits (74), Expect = 0.78
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 167 ERGGGAAVEVHNEVSSSTAKAKTTKAE-RRAMQEAQRAAKAATK--GKGGGGGVEVNNRE 223
+R A +NE +S K ++E + EA R A + +
Sbjct: 176 DRARNQAERFNNESGASATNTKQWRSEADGSNSEANRFKGYADSMTSSVEAAKGQAESSS 235
Query: 224 SSSNTLKAKTTKAERRETQEAQRAAKAAGKA 254
+NT TKA + AA A
Sbjct: 236 KEANTAGDYATKAAASASAAHASEVNAANSA 266
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 32.9 bits (75), Expect = 0.54
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 191 KAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQR---- 246
+ ER Q A +A +G G S + + + E+++ ++
Sbjct: 338 QKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPL 397
Query: 247 -----AAKAAGKAQGN 257
A K A + + N
Sbjct: 398 HPSWEAKKKAKEKKAN 413
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 33.0 bits (76), Expect = 0.57
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 185 AKAKTTKAERRA-MQEAQRAAKAATKGKGGGGGVEVNNRESS--SNTLKAKTTKAERRET 241
A+ K R A ++A AA A K K + + + N+ +A + +
Sbjct: 471 ARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQA 530
Query: 242 QEAQRAAKAAGKAQGNKP-VAAA 263
+ Q +AA A K VAAA
Sbjct: 531 RARQAEKQAAAAADPKKAAVAAA 553
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 32.6 bits (75), Expect = 0.61
Identities = 19/68 (27%), Positives = 24/68 (35%)
Query: 158 EGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGV 217
G + G AA + A AK K ++ A AA A G GGGG
Sbjct: 373 AGARSTGGGAGGAAAAAAAGAAAAGPPAWAKRMKRRQQLTHGATTAAHALRSGDSGGGGS 432
Query: 218 EVNNRESS 225
+ ES
Sbjct: 433 SPSLSESD 440
Score = 30.3 bits (69), Expect = 3.2
Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 15/112 (13%)
Query: 200 AQRAAKAATKGKGGG-------GGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAG 252
A A A G G GGV ++++ L+ ++A + A++ G
Sbjct: 320 ASSAYSAGAAGGSGAAGVAAGLGGVARAGASAAASPLRRAASRAAESMKSSFRAGARSTG 379
Query: 253 KAQGNKPVAAAGGAGPGNILRQPS-----QNRDDPAVGSTIAGSDRRGGDRP 299
G AAA GA P+ + R G+T A R GD
Sbjct: 380 GGAGGAAAAAAAGAAAAG---PPAWAKRMKRRQQLTHGATTAAHALRSGDSG 428
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 32.6 bits (74), Expect = 0.68
Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 161 KPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVN 220
+P VP G A E + V + +A+ E+RA +E +R + G G G
Sbjct: 395 RPPRVPVEGEEADDEAGDSVGTIFREAR----EQRAAEEQRRGGGRSGPGGGSRSGSVGG 450
Query: 221 NRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQ 277
K R + A A PV AA A ++ +
Sbjct: 451 GGRRDGAGADGKP----RPRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVVAADGE 503
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.5 bits (74), Expect = 0.70
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 17/110 (15%)
Query: 158 EGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGV 217
K +A E AA E + + A +A+++A EA++ A A K K
Sbjct: 165 AEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKA----- 219
Query: 218 EVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAG 267
A+ A + EA+ AA+ A A+ + AAA A
Sbjct: 220 ------------AAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAA 257
Score = 30.2 bits (68), Expect = 3.4
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 185 AKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEA 244
A A+ +A EA+RAA AA K E + + KA AE ++ EA
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAAAKKAAA-----EAKKKAEAEAAKKA---AAEAKKKAEA 189
Query: 245 QRAAKAAGKAQ 255
+ AAKAA +A+
Sbjct: 190 EAAAKAAAEAK 200
Score = 29.4 bits (66), Expect = 5.7
Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 8/138 (5%)
Query: 160 KKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEV 219
K EA +R AA + E KA A ++A+ A A E
Sbjct: 147 AKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAA-------EA 199
Query: 220 NNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNR 279
+ + KA ++ + AAKAA +A+ AAA A + +
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEV 259
Query: 280 DDPAVGSTIA-GSDRRGG 296
DD G + + GG
Sbjct: 260 DDLFGGLDSGKNAPKTGG 277
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 32.5 bits (74), Expect = 0.71
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 16/113 (14%)
Query: 158 EGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGV 217
+G + + G AA S A+ K+ AE A + A A
Sbjct: 224 DGTEVPLLAPWQGDAA----PVPPSEAARPKSADAETNAALKTPATAPKA---------- 269
Query: 218 EVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAG--KAQGNKPVAAAGGAGP 268
N ++ + T AE + A+ AA AA +P+ A G
Sbjct: 270 AAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGA 322
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 32.2 bits (74), Expect = 0.87
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 231 AKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAG------PGNILRQPSQNRDDPAV 284
+ T ERR +EA +A A +P+AAA GAG G+++ + AV
Sbjct: 110 SGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAV 169
Query: 285 GS----TIAGSDRRGGDR 298
S + S R GGD+
Sbjct: 170 ISLGGIVSSSSVRVGGDK 187
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 32.1 bits (73), Expect = 0.88
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 185 AKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRE-TQE 243
AK K +A+++A EA+ A+A K K E ++ + KA A + E
Sbjct: 164 AKKKAAEAKKKAEAEAKAKAEAKAKAK-----AEEAKAKAEAAKAKAAAEAAAKAEAEAA 218
Query: 244 AQRAAKAAGKAQGNKPVAAAGGAGPGNILRQ 274
A AA+A KA + G A N +Q
Sbjct: 219 AAAAAEAERKADEAELGDIFGLASGSNAEKQ 249
Score = 29.8 bits (67), Expect = 5.0
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 185 AKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEA 244
+AE++A +EA++ A+ K K ++++ KA+ + E +
Sbjct: 133 KAKAEAEAEKKAKEEAKKQAEEEAKAK----AAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Query: 245 QRAAKAAGKAQGNKPVAAA 263
+A +A KA+ K AAA
Sbjct: 189 AKAEEAKAKAEAAKAKAAA 207
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 32.3 bits (74), Expect = 0.99
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 182 SSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNR---ESSSNTLKAKTTKAER 238
S A K KA++ E ++AAK K + +R + T+ +A R
Sbjct: 9 SKNALKKRLKAKQA---EEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANR 65
Query: 239 RETQEAQRAA 248
+ EA RA
Sbjct: 66 LKKVEALRAK 75
Score = 31.1 bits (71), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 228 TLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAA 263
LKAK + E+ +EA+ AA AA ++ AAA
Sbjct: 16 RLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAA 51
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 31.8 bits (72), Expect = 1.4
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 180 VSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERR 239
++ T +AK +AE R + AQ+AA+AAT+ E +++ AK A++
Sbjct: 249 AAAKTDEAKA-RAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKA 307
Query: 240 ETQEAQRAAKAA 251
ET +A AK A
Sbjct: 308 ETAKAATDAKLA 319
>gnl|CDD|224787 COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family
domains [General function prediction only].
Length = 436
Score = 31.2 bits (71), Expect = 1.7
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 439 NAI-RFQKSRIAKLPLT-LSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDV 496
A+ RF++ + +P+ + E +A ++I R + L D++ R+ +++ G
Sbjct: 17 TALFRFEEHDVV-IPMVVIEELDATKRGHSEIGRNARQASRLLDEL--RNEHGRLKAGIP 73
Query: 497 LLTYGSSCVVEMILLYAHELGKQFRVVVVDSR 528
L G + VE+ + +L FR V D+R
Sbjct: 74 LGNKGGTLHVELNHQNSTKLPNGFREGVNDNR 105
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 31.3 bits (71), Expect = 1.9
Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 42/214 (19%)
Query: 136 GSSFPGGGFDLTTVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERR 195
++ GG L+ V M G ++ V ++ K +
Sbjct: 23 AAAAIGGALYLSDVDMS------GNGEAVAE---QEPVPDMTGVVDTTF----DDKVRQH 69
Query: 196 AMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAK------ 249
A E Q A + ++ + ++ + +R K
Sbjct: 70 ATTEMQVTAAQM---------------QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNA 114
Query: 250 ---AAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSDRRGGDRPPERER-- 304
KA G PV A G P P +P G+T +G P
Sbjct: 115 ALAEQVKALGANPVTATGEPVPQMPASPPGPEG-EPQPGNTPVSFPPQGSVAVPPPTAFY 173
Query: 305 --KKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAK 336
PPP++ + N+ +++ K
Sbjct: 174 PGNGVTPPPQVTYQSVPVPNRIQRKTFTYNEGKK 207
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members
of this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 31.3 bits (71), Expect = 1.9
Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 8/116 (6%)
Query: 6 VSQVVPKVRQVGFVTHSDPNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSEN 65
VSQ T + N S +S S + S S FSP
Sbjct: 113 VSQAKKSPPASK--TSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQSPQLTP 170
Query: 66 LSHLRSAAVAVPESSSRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTT 121
+ S P SS + P + + V S + S L S + + TT
Sbjct: 171 SNKPAS-----PSSSYQSPSYSSSLGPVNS-SGNRSNLRSSPWALRSSGDKKDITT 220
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 30.4 bits (69), Expect = 2.1
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 316 DDQGRVNKSKKRA-VFNQPEAKNRVELFRH-LPQYEHGSQLTDLESK--FLELDSM 367
++ G +++ VFN PE + H L + L +SK ++ LD
Sbjct: 58 NEDGELDRKALGERVFNDPEELKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVP 113
>gnl|CDD|218566 pfam05349, GATA-N, GATA-type transcription activator, N-terminal.
GATA transcription factors mediate cell
differentiation in a diverse range of tissues. Mutation
are often associated with certain congenital human
disorders. The six classical vertebrate GATA proteins,
GATA-1 to GATA-6, are highly homologous and have two
tandem zinc fingers. The classical GATA transcription
factors function transcription activators. In lower
metazoans GATA proteins carry a single canonical zinc
finger. This family represents the N-terminal domain of
the family of GATA transcription activators.
Length = 177
Score = 30.2 bits (68), Expect = 2.1
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 34 QSVPIESNSGTPS---DSPDF------SPVMIPPPRHHS--ENLSHLRSAAVAVPESS-S 81
QS+ + +N G + DS F SPV +P R S +L +L+ + + +
Sbjct: 3 QSLALAANHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLPYLQGCEASQQAHALA 62
Query: 82 RRPMWDDRVAVVGSYNPG 99
P W A ++NPG
Sbjct: 63 AHPGWSQAAAESSAFNPG 80
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 30.9 bits (70), Expect = 2.7
Identities = 21/122 (17%), Positives = 29/122 (23%), Gaps = 6/122 (4%)
Query: 197 MQEAQRAAKAATKGKGGGGGVEVNNRESSSN----TLKAKTTKAERRETQEAQ--RAAKA 250
+ EA + A +G G V + A R + +
Sbjct: 768 LAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPD 827
Query: 251 AGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSDRRGGDRPPERERKKDVPP 310
G A P S A G G + R RPPE +
Sbjct: 828 GGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAA 887
Query: 311 PR 312
P
Sbjct: 888 PP 889
>gnl|CDD|218088 pfam04437, RINT1_TIP1, RINT-1 / TIP-1 family. This family includes
RINT-1, a Rad50 interacting protein which participates
in radiation induced checkpoint control, as well as the
TIP-1 protein from yeast that seems to be involved in a
complex with Sec20p that is required for golgi
transport.
Length = 483
Score = 30.8 bits (70), Expect = 2.8
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 30/111 (27%)
Query: 396 AFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIE--CRP--------------------L 433
F E IN + L D I + + R
Sbjct: 290 LFDETINSL-----ERLRLDSEGSIVHRLVKGFKAALRNYFKISTWSSLSSTSALESLSP 344
Query: 434 SMSMGNAIRFQKSRIAKLPLTLSET---EAKAALCNDIDRFINEKIILADK 481
S + A+R+ + RI+KL L L +D +I I++ +K
Sbjct: 345 SAELVEALRYLRRRISKLERLLPLAIFLRIWRQLLLSLDTYIISSILMLNK 395
>gnl|CDD|178283 PLN02679, PLN02679, hydrolase, alpha/beta fold family protein.
Length = 360
Score = 30.2 bits (68), Expect = 3.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 172 AAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRE 223
A+ H +SSST+ + T + R + RA + + GGVE E
Sbjct: 7 TAMHHHFMLSSSTSASTTRRIGLRRDRACVRATASGSTAVSSSGGVEAELEE 58
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 30.3 bits (68), Expect = 3.1
Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 9/152 (5%)
Query: 158 EGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGV 217
K A + E E T K K KA+ A +A+ AA A K G G
Sbjct: 134 AAKAKAAALAKQKREGTEEVTEEEEETDKEKA-KAKAAAAAKAKAAALAKQKAAEAGEGT 192
Query: 218 EVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQ 277
E E + KAK A A+ A A K + ++ +G ++
Sbjct: 193 EEVTEEEKAKA-KAKAAAA-------AKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAK 244
Query: 278 NRDDPAVGSTIAGSDRRGGDRPPERERKKDVP 309
+ A + G++ + + P + E + P
Sbjct: 245 AKAAAAARAKTKGAEGKKEEEPKQEEPSVNQP 276
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 30.5 bits (69), Expect = 3.1
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 69 LRSAAVAVPESSSRRPMWDDRVAVVGSYNPG-NSLLGQPVSPNSSEVNSEASTT 121
L S VA S P RVA+VG N G +SLL Q + VN A TT
Sbjct: 432 LDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT 485
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 30.3 bits (68), Expect = 3.1
Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 15 QVGFVTHSDPNPPPQASRAQSVPIESNSGTPSDSPDFSPV-----MIPPPRHHSENLSHL 69
G S+ P QAS VP ++SG + + D S V M+P P + S
Sbjct: 379 VPGITNSSNQGDP-QASTFNGVPNANSSGFAAHTQDLSSVIPGWTMLPIPGTRRISQSTS 437
Query: 70 RSAAVAVPESSSRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNS 116
+ A P + +P NS G P + +S N
Sbjct: 438 TTNPSATPTTG----------------DPSNSTYGGPQTFPNSGNNP 468
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 30.3 bits (68), Expect = 3.5
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 5/136 (3%)
Query: 157 LEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGG 216
L+ + PE A +++ A A + A A RAA T G
Sbjct: 258 LDLRSPERKERAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERA 317
Query: 217 VEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGK--AQGNKPVAAAG---GAGPGNI 271
+ + +++ + AE+ + A+ A +AA K Q P +++ GA
Sbjct: 318 AKPAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAA 377
Query: 272 LRQPSQNRDDPAVGST 287
R P++ RD A +
Sbjct: 378 ARTPARARDAAAPDAD 393
Score = 29.1 bits (65), Expect = 8.9
Identities = 34/153 (22%), Positives = 50/153 (32%), Gaps = 6/153 (3%)
Query: 161 KPEAVPE-RGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEV 219
+PE VP +G A+++ + A A+ +A A A AA AA + +
Sbjct: 244 EPEIVPGVKGVQEALDLRSPERKERAAAR--EARAAAAAPAATAAAAAPAEEPAVAPMAA 301
Query: 220 NNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNR 279
R + T K +A + + A K A P + Q
Sbjct: 302 I-RAAHVETAADKGERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQ-A 359
Query: 280 DDPAVGSTIA-GSDRRGGDRPPERERKKDVPPP 311
DPA S G+ R P R R P
Sbjct: 360 ADPASSSADKPGASADAAARTPARARDAAAPDA 392
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 30.0 bits (67), Expect = 3.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 304 RKKDVPPPRMQFDDQGRVNKSKKRAVFNQ---PEAKN-RVELFRHLPQYE 349
R DV PP M DD+ + ++ A + P+A+N +V L R LP +E
Sbjct: 115 RSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLERALPFWE 164
>gnl|CDD|217353 pfam03072, DUF237, MG032/MG096/MG288 family 1. This family
consists entirely of mycoplasmal proteins. Their
function is unknown. Another related family, pfam03086,
also consists entirely of mycoplasmal proteins of the
MG032/MG096/MG288 family. Some proteins are included in
both families, but of course differ in the aligned
residues.
Length = 137
Score = 28.9 bits (65), Expect = 3.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 296 GDRPPERERKKDVPPPRMQFDDQ 318
GD P KKD P QF D+
Sbjct: 98 GDLPSWIVGKKDYPGSLFQFTDK 120
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 30.3 bits (68), Expect = 3.8
Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 23/167 (13%)
Query: 167 ERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSS 226
+R G + +S +K + + + R ++ + K K V + SS
Sbjct: 236 DRDGD----KQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEK--------NVVSGIRSS 283
Query: 227 NTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPAVGS 286
LK K+ + R+++ K A + G+ S + +D S
Sbjct: 284 VLLKRKS-QCLRKDSYVYSNHQKKAKTGDPKNIIHRNNGS---------SNSNNDDTSSS 333
Query: 287 TIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKRAVFNQP 333
GS R +R P KK + NK+K FN P
Sbjct: 334 NHLGS-NRISNRNPSSPYKKQTTTKHTNNTKNNKYNKTKTTQKFNHP 379
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 30.0 bits (68), Expect = 4.0
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 184 TAKAKTTKAERRAMQEAQRAAKA---ATKGKGGGGGVEVNNRESS----------SNTLK 230
K K TK ER A + R + + KGK G N+E + ++
Sbjct: 233 AKKKKQTKEERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVR 292
Query: 231 AKTTKAERRETQEAQRAAKAAGKAQG 256
K K R+ Q+ RA K G
Sbjct: 293 GK-QKRSLRDKQKVLRAHILRQKKGG 317
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 30.2 bits (68), Expect = 4.1
Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 6/99 (6%)
Query: 185 AKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEA 244
A+ K R A + +A K K E+N +A R +
Sbjct: 327 AENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAK 386
Query: 245 QRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPA 283
++ A + + P G P A
Sbjct: 387 KKGLIDASPNE-DTPSENEESKG-----SPPQVEATTTA 419
>gnl|CDD|178778 PLN03240, PLN03240, putative Low-temperature-induced protein;
Provisional.
Length = 626
Score = 30.2 bits (67), Expect = 4.2
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 188 KTTKAERRAMQEAQRAAKAATK-----GKGGGGGVEVNNRESSSNTLKAKTTKAERRETQ 242
++ + E+R +++AATK + G GG+ R + ++ + T + ++ T+
Sbjct: 523 QSEEVEKRLGGFKDPSSEAATKHGEAYAEEGEGGIAEKLRGAVTSWIAGTTEEVTQKSTE 582
Query: 243 EAQRAAKAAGKAQGNK-PVAAAGGAGPGNILRQPSQNR 279
Q + ++ G GNK ++ +GG GN P Q R
Sbjct: 583 SVQDSTQSLGSTIGNKMGISGSGGEEAGNGGSMPLQKR 620
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 29.9 bits (67), Expect = 4.3
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 166 PERGGGAAVEVHNEVSSSTAKAKTTKAERRAM----QEAQRAAKAATKGKGGGGGVEVNN 221
P R G A+ + + + + TT+ R+ ++ Q AK K
Sbjct: 132 PVRNGNASRQT--AKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPA 189
Query: 222 RESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNI 271
+S A T+ +ET A+ AAGG GN+
Sbjct: 190 APVASTKAPAATSTPAPKETATTAPVQTASPAQ--TTATPAAGGKTAGNV 237
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 29.9 bits (67), Expect = 4.5
Identities = 27/167 (16%), Positives = 41/167 (24%), Gaps = 22/167 (13%)
Query: 164 AVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRE 223
AV G G N+ K AE A+ + A + VE
Sbjct: 314 AVGPVGPGEP----NQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVE----- 364
Query: 224 SSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRD--D 281
+ + + Q A ++ A A A P S+ D +
Sbjct: 365 -----------ETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETE 413
Query: 282 PAVGSTIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKRA 328
P V A D P Q + ++R
Sbjct: 414 PEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRRRRW 460
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family.
Length = 168
Score = 29.1 bits (66), Expect = 4.6
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 90 VAVVGSYNPG-----NSLLGQPVSPNSS 112
+AVVG + G N+LLG+ + P
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDILPRGP 28
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 29.6 bits (66), Expect = 4.8
Identities = 31/135 (22%), Positives = 43/135 (31%), Gaps = 3/135 (2%)
Query: 146 LTTVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAK 205
T K + F LE G +A + S A ++ A A + +A
Sbjct: 102 SETYKEKKFQVLETLGTYNQLGNAGASASITKTS-NGSDAATTSSTANTPAAAKVLKANA 160
Query: 206 AATKGKGGGGGVEVNNRESSSNTLKAKTT--KAERRETQEAQRAAKAAGKAQGNKPVAAA 263
A+ G G S+ T TT K R+ Q + AA KAQ + A
Sbjct: 161 ASAPNTTTGVGSAATTAAISATTATTPTTTQKKPRKPRQTKKTGPAAAAKAQASAQAQAQ 220
Query: 264 GGAGPGNILRQPSQN 278
A QN
Sbjct: 221 ASAYNQMGSLGVPQN 235
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional.
Length = 1060
Score = 29.8 bits (67), Expect = 5.0
Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 10/187 (5%)
Query: 22 SDPNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSENLSHLRSAAVAVPESSS 81
S +P + ++ + + S + + + S R S
Sbjct: 4 SASSPLSLSRHSRLLTLPSTIPPILPASTLRRDFLGCSHNLRPPNSASRLRGGKSKSIRS 63
Query: 82 RRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFGRNSSGKFSAGSSFPG 141
R + R+ V S G L+ V+ S+ + R SS + S
Sbjct: 64 R--IRSPRLVVNASLGSGLVLVVVAVTAFSAISFAYLQH---TRRRKSSPLVATPS---- 114
Query: 142 GGFDLTTVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQ 201
G ++T+ E+ L+G + ++ EV + + ER M+E
Sbjct: 115 -GGGISTLNREDVQSLDGDVHKGTSTEINVGFRDLVEEVEHTEEEKTHQAQERALMEEES 173
Query: 202 RAAKAAT 208
+ +
Sbjct: 174 VVVEGSE 180
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.9 bits (68), Expect = 5.3
Identities = 17/83 (20%), Positives = 31/83 (37%)
Query: 5 RVSQVVPKVRQVGFVTHSDPNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSE 64
+S++ +P+PPP + + + + TPS P + IP P +E
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423
Query: 65 NLSHLRSAAVAVPESSSRRPMWD 87
+ A P S + +W
Sbjct: 424 PSPTPPANAANAPPSLNLEELWQ 446
>gnl|CDD|233727 TIGR02101, IpaC_SipC, type III secretion target, IpaC/SipC family.
This model represents a family of proteins associated
with bacterial type III secretion systems, which are
injection machines for virulence factors into host cell
cytoplasm. Characterized members of this protein family
are known to be secreted and are described as invasins,
including IpaC from Shigella flexneri and SipC from
Salmonella typhimurium (GB:AAA75170.1). Members may be
referred to as invasins, pathogenicity island effectors,
and cell invasion proteins [Cellular processes,
Pathogenesis].
Length = 317
Score = 29.5 bits (66), Expect = 5.5
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 177 HNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGG----GGGVEVNNRESSSNTLKAK 232
H S ++ K + Q KA G N +S A
Sbjct: 202 HKAQLSQRVESLQDKIDLHQQTYEQNTLKAQAMQMIGDLIMRMSAVAGNISGASGQYAAT 261
Query: 233 TTKAERRETQEAQRAAKAAGKA 254
+AE++ +Q + R A A
Sbjct: 262 QEEAEQQISQSSSRTASTASNE 283
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 29.8 bits (67), Expect = 5.6
Identities = 30/157 (19%), Positives = 44/157 (28%), Gaps = 15/157 (9%)
Query: 164 AVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRE 223
A P A +++ A+A RR+ AA +G GG
Sbjct: 395 AAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA----- 449
Query: 224 SSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNI---------LRQ 274
+ A A R + A AA A AAA +
Sbjct: 450 -PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFAS 508
Query: 275 PSQNRDDPAVGSTIAGSDRRGGDRPPERERKKDVPPP 311
P+ + D A +A S P+ + P P
Sbjct: 509 PAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAP 545
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 29.4 bits (65), Expect = 6.0
Identities = 41/184 (22%), Positives = 57/184 (30%), Gaps = 14/184 (7%)
Query: 105 QPVSPNSSEVNSEASTTLGWFGRNSSG----------KFSAGSSFPGGGFDLTTVKMENF 154
+P SP +E + ST G S +FS SF GF K E
Sbjct: 102 EPASPAEAEGEAATSTEKAEDGATPSPSSETPKKKKKRFSFKKSFKLSGFSFKKNKKEAG 161
Query: 155 TQLEGKKPEAVPERG-GGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGG 213
E + A E AA S A A +A A+ A
Sbjct: 162 EGAEAEGAAAEKEGAKEEAAAAAPEAGSGEEAAAPGEEA---GAAGAEGEAGEEPAADAE 218
Query: 214 GGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILR 273
E E++ +A+ KA + E + A +A + + AA A P
Sbjct: 219 PEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEAGASSAAQEAPAAEQEAAPAEEPA 278
Query: 274 QPSQ 277
P Q
Sbjct: 279 APPQ 282
>gnl|CDD|218559 pfam05335, DUF745, Protein of unknown function (DUF745). This
family consists of several uncharacterized Drosophila
melanogaster proteins of unknown function.
Length = 188
Score = 28.8 bits (65), Expect = 6.2
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 186 KAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQ 245
+AK+ A++ A+Q A +AA+AA GK V E +A + E + Q+++
Sbjct: 42 QAKSQLADK-ALQAA-KAAEAALAGK----QQLVEQLEQEVREAEA-VVEEESQSLQQSE 94
Query: 246 RAAKAAGKA 254
A AA A
Sbjct: 95 ANATAAQAA 103
>gnl|CDD|221517 pfam12300, DUF3628, Protein of unknown function (DUF3628). This
domain family is found in bacteria, and is typically
between 153 and 183 amino acids in length. The family is
found in association with pfam00270, pfam00271.
Length = 180
Score = 28.9 bits (64), Expect = 6.6
Identities = 27/123 (21%), Positives = 39/123 (31%), Gaps = 5/123 (4%)
Query: 162 PEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNN 221
P PER A E + S E RA QE +R + G+ G V
Sbjct: 16 PLPRPERAPAAGEEASDGNGDSVGDIFREAREVRAAQEWRRGGGRSGPGERSGRPVGKGP 75
Query: 222 RESSSNTLKAKTTKAERRETQEAQRAAKA-----AGKAQGNKPVAAAGGAGPGNILRQPS 276
R+ + + + R E + A A A + AA G R+
Sbjct: 76 RDGDGGGGRRRGPRKPRLEGERDSAADGAVTPVFGASAPRPPGIVAAPGEEVPRKRRRRR 135
Query: 277 QNR 279
+ R
Sbjct: 136 RGR 138
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 29.0 bits (65), Expect = 8.9
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 159 GKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAA------KAATKGKG 212
G KP VP G+ E + + K + +AE + +E R K K
Sbjct: 16 GLKPLPVPGAKPGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKL 75
Query: 213 GGG------GVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQ 255
GG + ++ ++ K + K E + K +A
Sbjct: 76 GGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEKERAA 124
>gnl|CDD|151621 pfam11179, DUF2967, Protein of unknown function (DUF2967). This
family of proteins with unknown function appears to be
restricted to Drosophila.
Length = 284
Score = 28.8 bits (63), Expect = 9.1
Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 26/156 (16%)
Query: 198 QEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGN 257
++A+ A +A+ KG G G GV S E +AQ A + +
Sbjct: 43 EDAKDAGRASGKGTGSGAGVGGGGGSGSGVGGNGVMAAGAADEAADAQEEDAIANRNKKL 102
Query: 258 KP------VAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSDRRGGDRPPERERKKDVP-- 309
+ A N S+N P+V + R P+RE+K+ P
Sbjct: 103 RARERDPMAGNANANANANGGSNSSRNHISPSVSPS---HSNRAS---PKREKKRTTPIA 156
Query: 310 -----------PPRMQFDD-QGRVNKSKKRAVFNQP 333
PP M+ + G K K+R N P
Sbjct: 157 STGAIAKINSAPPTMKDANFFGSSGKQKQRPSQNIP 192
>gnl|CDD|234700 PRK00249, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 222
Score = 28.3 bits (64), Expect = 9.1
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 49 PDFSPVMIPPPRHHSENLSHLRSAAVAVPESSSRRPMWDDRVAVVGSYNPGNSL---LGQ 105
P +PV P P + + + +P++ DR A N G+ L L +
Sbjct: 23 PAAAPVEAPTPLPNPAPNGSI--FQAGSLWNYGYQPLFKDRRA----RNVGDILTVVLQE 76
Query: 106 PVSP---NSSEVNSEASTTLGW---------FGRNSSGKFSAGSSFPGGG 143
S NS+ + ++ST G N+S + S+ +SF G G
Sbjct: 77 NTSASKSNSTNRSRDSSTNFGLPSLFGYLNGLDANASLETSSDNSFKGKG 126
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 28.1 bits (63), Expect = 9.2
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
Query: 516 LGK----QFRVVVVDSRPKHEGQAL 536
LGK Q+R+VV DSR K +G+A+
Sbjct: 10 LGKIRNPQYRIVVADSRTKRDGRAI 34
>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 28.8 bits (65), Expect = 9.3
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 33/113 (29%)
Query: 460 AKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSS-CVVEMILLYAHELGK 518
A+AA+ N + +F+ I DK + T V G++ + E + A+
Sbjct: 360 AEAAIKNGVKKFVL---ISTDKAV---NPTNV--------MGATKRLAEKLFQAANRNVS 405
Query: 519 QFR----VV----VVDSR----PKHEGQALLRRLLAKGLSCTYTHINAVSYIM 559
VV V+ SR P L ++ +A+G T T + + M
Sbjct: 406 GTGTRFCVVRFGNVLGSRGSVIP------LFKKQIAEGGPLTVTDPDMTRFFM 452
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation
factor (transactivator). This family includes EBV BRLF1
and similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 29.0 bits (65), Expect = 9.6
Identities = 16/119 (13%), Positives = 26/119 (21%), Gaps = 3/119 (2%)
Query: 2 DARRVSQVVPKVRQVGFVTHSDPNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRH 61
+ K + + P P S P
Sbjct: 317 QPTFLPPNTNKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPPSNSP 376
Query: 62 HSENLSHLRSAAVAVPESS---SRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSE 117
+L+ S A P S + + + PG+SL+ QP
Sbjct: 377 LLSSLADTPSGAAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQELGPSVMA 435
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent),
methyltransferase domain [Amino acid transport and
metabolism].
Length = 311
Score = 28.8 bits (65), Expect = 10.0
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 225 SSNTLKAKTTKAERRETQEAQRAAK----AAGKAQGNKPVAAAGGAGPGNILRQPSQN 278
+ T+K E + + Q+AA+ AA +A KP AG GP N S +
Sbjct: 76 GATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSISPD 133
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.1 bits (65), Expect = 10.0
Identities = 47/297 (15%), Positives = 81/297 (27%), Gaps = 14/297 (4%)
Query: 22 SDPNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSENLS------HLRSAAVA 75
+ P+P P + A P S S ++ P +PPP ++ + R+ +
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671
Query: 76 VPESSSRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFGRNSSGKFSA 135
+S P R A + SL P P + E A + G +A
Sbjct: 2672 RAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSA---TPLPPGPAAA 2728
Query: 136 GSSFPGGGFDLTTVKMENFTQLE-GKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAER 194
+ P + G A P G ++ + T+
Sbjct: 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
Query: 195 RAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKA 254
++ E++ + + V A AQ A
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP----PTSAQPTAPPPPPG 2844
Query: 255 QGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSDRRGGDRPPERERKKDVPPP 311
+ G PG +R+ +R A + A R RP + P
Sbjct: 2845 PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALP 2901
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.372
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,589,458
Number of extensions: 3088744
Number of successful extensions: 3958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3754
Number of HSP's successfully gapped: 139
Length of query: 630
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 527
Effective length of database: 6,369,140
Effective search space: 3356536780
Effective search space used: 3356536780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)