RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006803
(630 letters)
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha);
2.65A {Homo sapiens}
Length = 315
Score = 229 bits (587), Expect = 1e-70
Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 5/227 (2%)
Query: 388 ARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSR 447
A +A +R E + + L +LT+ I + +++S G + +
Sbjct: 21 ASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGV---DSSVAVSSGGELFLRFIS 77
Query: 448 IAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVE 507
+A L + ++ K + + F+ +I L+ I T ++DG +LT+ S VV
Sbjct: 78 LASLEYS-DYSKCKKIMIERGELFL-RRISLSRNKIADLCHTFIKDGATILTHAYSRVVL 135
Query: 508 MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL 567
+L A K+F V V +S+P G+ + + L + T AV YIM + V +
Sbjct: 136 RVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIV 195
Query: 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLD 614
GA V+ NG +++GT +A+ A A P + E++KF L+
Sbjct: 196 GAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLN 242
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii}
SCOP: c.124.1.5
Length = 276
Score = 105 bits (265), Expect = 1e-25
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 427 LIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRH 486
+++ P S+ N RF + T + L + F+ + A + +
Sbjct: 55 VVKVNPSMASLYNLARF-----------IPVTNRRDILKSRALEFLRR-MEEAKRELASI 102
Query: 487 AATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS 546
A + DGDV++T+ S V I+ A E K+F+V++ +S P +EG L R L G+
Sbjct: 103 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 162
Query: 547 CTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606
+ E + +GA + +G ++ GT +A+ H +P + E YK
Sbjct: 163 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 222
Query: 607 FHERVQLDSI 616
FH ++ +
Sbjct: 223 FHPTLKSGDV 232
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase,
hexamer, rossmann fold; 2.50A {Thermococcus
kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Length = 338
Score = 88.9 bits (221), Expect = 2e-19
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 2/195 (1%)
Query: 415 DLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLT-LSETEAKAALCNDIDRFIN 473
+ ++ L E RP ++S+ NA+R+ R + + + + N FI+
Sbjct: 63 EFWKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIH 122
Query: 474 EKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEG 533
A + I A ++ DGDV++T+ S ++ A E GK +V+V ++RPK +G
Sbjct: 123 NSE-KALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQG 181
Query: 534 QALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHA 593
+ + L + G+ Y +A + M +V +GA S+ NG +++GTA +A+ A
Sbjct: 182 KITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKE 241
Query: 594 FRVPVLICCEAYKFH 608
RV +I E YKFH
Sbjct: 242 HRVWTMIAAETYKFH 256
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage
pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB:
2yrf_A*
Length = 374
Score = 63.9 bits (156), Expect = 4e-11
Identities = 39/202 (19%), Positives = 86/202 (42%), Gaps = 21/202 (10%)
Query: 415 DLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINE 474
+ ++ +L RP ++++ A+ + S EAK L ++ + I
Sbjct: 99 EFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENAI---SVNEAKTNLVHEAIQ-IQV 154
Query: 475 KIILADKVIVRHAATKVRDGDVLLT-----------YGSSCVVEMILLYAHELGKQFRVV 523
+ ++I ++A + GD ++T YG++ A + +
Sbjct: 155 EDEETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAP---FYLAKQKDLGLHIY 211
Query: 524 VVDSRPKHEGQALLR-RLLAKGLSCTYTHINAVSYIM--HEVTRVFLGASSVLSNGTTYS 580
++RP +G L L+ G+ T + ++ M +++ V +GA + NG T +
Sbjct: 212 ACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTAN 271
Query: 581 RVGTACVAMVAHAFRVPVLICC 602
++GT +A++A+AF +P +
Sbjct: 272 KIGTYGLAILANAFDIPFFVAA 293
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural
genomics, translation initiation factor, AIF-2B subunit,
PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Length = 347
Score = 63.5 bits (155), Expect = 6e-11
Identities = 44/202 (21%), Positives = 84/202 (41%), Gaps = 21/202 (10%)
Query: 415 DLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINE 474
LT + L RP ++++ A+ + + L N+ + +
Sbjct: 74 SLTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENA---DRENLFEILENEALK-MAY 129
Query: 475 KIILADKVIVRHAATKVRDGDVLLT-----------YGSSCVVEMILLYAHELGKQFRVV 523
+ I +K I ++ A ++DG +LT YG++ V + A E GK+ RV
Sbjct: 130 EDIEVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGV---IRAAVESGKRIRVF 186
Query: 524 VVDSRPKHEGQALLR-RLLAKGLSCTYTHINAVSYIM--HEVTRVFLGASSVLSNGTTYS 580
++RP +G L L+ G+ N ++M + V +GA + NG T +
Sbjct: 187 ADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTAN 246
Query: 581 RVGTACVAMVAHAFRVPVLICC 602
++GT +A++A +P +
Sbjct: 247 KIGTYSLAVLAKRNNIPFYVAA 268
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit
delta, structural GEN PSI, protein structure initiative;
1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Length = 351
Score = 58.8 bits (143), Expect = 2e-09
Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 22/202 (10%)
Query: 415 DLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINE 474
+L + FL RP ++++ I + K S E K + ++ + E
Sbjct: 72 ELKEHLKKAADFLASTRPTAVNLFVGIERALNAALK---GESVEEVKELALREAEK-LAE 127
Query: 475 KIILADKVIVRHAATKVRDGDVLLT-----------YGSSCVVEMILLYAHELGKQFRVV 523
+ + ++ + + A + DGDV+LT +G++ V + A E GK+ RV+
Sbjct: 128 EDVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGV---VRSAVEQGKEIRVI 184
Query: 524 VVDSRPKHEGQALLR-RLLAKGLSCTYTHINAVSYIM--HEVTRVFLGASSVLSNGTTYS 580
++RP ++G L L+ G+ T + V +M V +V +GA ++ + ++
Sbjct: 185 ACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFN 243
Query: 581 RVGTACVAMVAHAFRVPVLICC 602
++GT V++VA +P +
Sbjct: 244 KIGTYTVSVVAKHHNIPFYVAA 265
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein
structure initiative eukaryotic initiation factor; 2.10A
{Leishmania major} SCOP: c.124.1.5
Length = 383
Score = 54.9 bits (133), Expect = 4e-08
Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 40/244 (16%)
Query: 386 GNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQK 445
+ + + A Q + G+ + L F++ RP ++++ N +R K
Sbjct: 67 AVSAALGIAVATQRKAANGELKSGREVQTFLLTSCD----FVMTSRPTAVNLFNCLRDLK 122
Query: 446 SRIAKLPLTLSETEAKAALCN------DIDRFINEKI-ILADKVIVRHAATKVRDGDVLL 498
+++ KL T + E A D NE I I+ A + RD +L
Sbjct: 123 AQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSIL 182
Query: 499 T-----------YGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRL----LAK 543
T YG++ V + GK RV ++RP ++G RL +
Sbjct: 183 TICNTGALATSRYGTALGV---VRQLFYDGKLERVYACETRPWNQGA----RLTVYECVQ 235
Query: 544 -GLSCTYTHI--NAVSYIM--HEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPV 598
+ CT I A S +M ++ V +GA + NG T +++GT +A+ A V +
Sbjct: 236 EDIPCTL--ICDGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKL 293
Query: 599 LICC 602
+
Sbjct: 294 YVAA 297
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 7e-08
Identities = 59/341 (17%), Positives = 90/341 (26%), Gaps = 108/341 (31%)
Query: 134 SAGSSFPGGGFDLT-TVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVSSS-TAKAKT-- 189
S S P G + +L G P + GA V++ A+ +
Sbjct: 233 SIPISCPLIG--VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 190 --TKAERRAMQ-------EAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAE--- 237
+ R+A+ A N + L+ E
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAY---------------PNTSLPPSILEDSLENNEGVP 335
Query: 238 ------RRETQEA--QRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIA 289
TQE K K V + L N V ++
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--------LV----NGAKNLV---VS 380
Query: 290 GSDRRGGDRPPE-------RERKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELF 342
G PP+ RK P DQ R+ S+++ F NR F
Sbjct: 381 G--------PPQSLYGLNLTLRKAKAPSG----LDQSRIPFSERKLKF-----SNR---F 420
Query: 343 RHLPQYE--HGSQLT--------DLESKFLELD--SMHPAVYKV--G--VQYLAGDVTGG 386
LP H L DL + + + VY G ++ L+G ++
Sbjct: 421 --LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 387 NARCIAMLRAFQEVINDYSTP------PGKTL-VRDLTAKI 420
CI L E + PG + LT +
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 45.0 bits (106), Expect = 7e-05
Identities = 63/381 (16%), Positives = 110/381 (28%), Gaps = 124/381 (32%)
Query: 302 RER-KKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELF-------RHLPQYEHGSQ 353
+E+ K +P P F ++P EL L + Q
Sbjct: 34 QEQFNKILPEPTEGFAAD------------DEPTTP--AELVGKFLGYVSSLVEPSKVGQ 79
Query: 354 --------LTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAF---QEVIN 402
LT+ E+ +LE + +H K L + + +++ + + +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAK-----LLQENDTTLVKTKELIKNYITARIMAK 134
Query: 403 D-YSTPPGKTL---VRDLTAKISSYVSF---------LIECRPLSMSMGNAIRFQKSRIA 449
+ L V + A++ F E R L + + A
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 450 KLPLTLSETEAKAA-LCN---DIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCV 505
+ L T A + +I ++ + D D LL+ SC
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLEN-------------PSNTPDKDYLLSIPISCP 239
Query: 506 VEMILLY--AHELGKQFRVV--VVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHE 561
+I + AH + V ++ P LR L KG + H +
Sbjct: 240 --LIGVIQLAH-----YVVTAKLLGFTPGE-----LRSYL-KGAT---GHSQGL------ 277
Query: 562 VTRVFLGAS----SVLSNGTTYSRV----GTACVAMVAHAFRVPVLICCEAYKFHERVQL 613
VT V + + S + V G C A+ L +
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY----EAYPNTSL--------PPSILE 325
Query: 614 DSICSNELG----MLVLVLVR 630
DS+ +NE G ML +
Sbjct: 326 DSLENNE-GVPSPMLS---IS 342
Score = 42.0 bits (98), Expect = 7e-04
Identities = 54/269 (20%), Positives = 81/269 (30%), Gaps = 109/269 (40%)
Query: 221 NRESSSNTLKAKTTKAERRETQEAQRA----AKAAG---KAQGNKPVAA--AG---G--- 265
N S+S T ++ K TQ Q A KAA K++G P A AG G
Sbjct: 1711 NEHSTSYTFRS--EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 266 --AGPGNILRQPSQNRDDPAVGSTIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGR--- 320
A +++ + + V + RG V PR D+ GR
Sbjct: 1769 ALASLADVM-----SIES-LV-EVVF---YRG--------MTMQVAVPR---DELGRSNY 1807
Query: 321 ----VNKSKKRAVFNQPEAKNRVELFRHLPQYEHGSQLTDLESKFLELDSMHPAVYKV-G 375
+N + A F+Q + VE ++ +E Y V
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVE------------RVGKRTGWLVE-----IVNYNVEN 1850
Query: 376 VQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSM 435
QY V G+ R + + V+
Sbjct: 1851 QQY----VAAGDLRALDTV---TNVL---------------------------------- 1869
Query: 436 SMGNAIRFQKSRIAKLPLTLSETEAKAAL 464
N I+ QK I +L +LS E + L
Sbjct: 1870 ---NFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 37.0 bits (85), Expect = 0.022
Identities = 89/560 (15%), Positives = 147/560 (26%), Gaps = 201/560 (35%)
Query: 66 LSH--LRSAAVAVPESS----SRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEAS 119
LSH L + VP +S S+ + + ++ P + E +
Sbjct: 11 LSHGSLE-HVLLVPTASFFIASQ--LQEQFNKIL------------PEPTEGFAADDEPT 55
Query: 120 TTLGWFGRNSSGKFSAGSSFPG--GGFD--LTTVKMENFTQ--LEGKKPEAVPERGGGAA 173
T G+ + + P G FD L + F LEG
Sbjct: 56 TPAELVGKFLG--YVSSLVEPSKVGQFDQVLNLC-LTEFENCYLEGN------------- 99
Query: 174 VEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKT 233
++H + + TT + + + + A+ K +++S+S
Sbjct: 100 -DIHALAAKLLQENDTTLVKTKELIKNYITARIMAK--------RPFDKKSNSALF---- 146
Query: 234 TKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNI----LRQPSQNRDDPAVGSTIA 289
RA G A + VA GG G + LR VG I
Sbjct: 147 ------------RAVG-EGNA---QLVAIFGGQGNTDDYFEELRD-LYQTYHVLVGDLIK 189
Query: 290 GSDRRGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELFRH----L 345
S + + V + P +
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNI-----------LEWLENPSNTPDKDYLLSIPISC 238
Query: 346 PQYEHGSQLTDLES--KFLELDSMHPAVYKVGVQYLAGDVTGGN-----ARCIAM----- 393
P + L +L P + YL G TG + A IA
Sbjct: 239 P----LIGVIQLAHYVVTAKLLGFTPGELR---SYLKG-ATGHSQGLVTAVAIAETDSWE 290
Query: 394 -----------------LRAFQEVINDYSTPP---------GKTL------VRDLT-AKI 420
+R E + S PP + + + +LT ++
Sbjct: 291 SFFVSVRKAITVLFFIGVRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 421 SSYV----SFLIECRPLSMSMGNA-----------------IRFQK---------SRI-- 448
YV S L + + +S+ N + +K SRI
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 449 --AK-------LPLTL---SE--TEAKAALCNDIDRFINEKIILAD-KVIVRHAATKVRD 493
K LP+ S A + D+ + N D ++ V D
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK-NNVSFNAKDIQIPVYD----TFD 464
Query: 494 GDVLLTYGSSCV---VEMIL 510
G L S V+ I+
Sbjct: 465 GSDLRVLSGSISERIVDCII 484
Score = 30.4 bits (68), Expect = 2.1
Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 44/137 (32%)
Query: 2 DARRVSQVVPKVRQVGFVTHSDPNPPPQAS-----RAQSVPIES-----NSGTPSD---- 47
+A + + P + + + +++ P P S + Q ++ NS P+
Sbjct: 312 EAYPNTSLPPSILE-DSLENNEGVPSPMLSISNLTQEQ---VQDYVNKTNSHLPAGKQVE 367
Query: 48 -----SPD-FSPVMIPPPRHHSENL----SHLRSAAVAVPESSSRRPMWDDRVAVVGSYN 97
V+ PP+ +L LR A SR P +R
Sbjct: 368 ISLVNGAKNL--VVSGPPQ----SLYGLNLTLRKAKAPSGLDQSRIPF-SERKLKF---- 416
Query: 98 PGNSLLGQPVS-P-NSS 112
N L PV+ P +S
Sbjct: 417 -SNRFL--PVASPFHSH 430
Score = 28.5 bits (63), Expect = 8.2
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 28/128 (21%)
Query: 1 MDARRV--SQVVPKVRQVGF--VT---HSDPNPPPQASRAQSVPIESNSGTPSDSPDFS- 52
+D R+ S+ K F V HS P + + + ++ D
Sbjct: 402 LDQSRIPFSERKLKF-SNRFLPVASPFHSHLLVPASDLINKDLV---KNNVSFNAKDIQI 457
Query: 53 PVMIPPPRHHSENLSHLRSAAVAVPESS----SRRPM-WDDRVAVVGSY----NPGN-SL 102
PV + + + S LR + ++ E R P+ W+ ++ PG S
Sbjct: 458 PV------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 103 LGQPVSPN 110
LG N
Sbjct: 512 LGVLTHRN 519
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 3e-06
Identities = 50/337 (14%), Positives = 90/337 (26%), Gaps = 98/337 (29%)
Query: 347 QYEHGSQLTDLESKFLE-------LDSMHPAVYKVGVQYL--AGDVTGGNARCIAMLRAF 397
QY++ L+ E F++ D + K + ++ + D G R L +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 398 QEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSE 457
QE + V ++ +Y FL+ + + +T
Sbjct: 75 QE--EMV-----QKFVEEVLRI--NY-KFLMS------------PIKTEQRQPSMMTRMY 112
Query: 458 TEAKAALCNDIDRFIN------EKII-----L-----ADKVIVRH----------AATKV 491
E + L ND F + + L A V++ A
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVC 171
Query: 492 RDGDVL---------LTYGSSCVVEMIL-----LYAHELGKQFRVVVVDS-----RPKHE 532
V L + E +L L +++ + D H
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNW-TSRSDHSSNIKLRIHS 229
Query: 533 GQALLRRLLAKGLSCTYTHINA------VSYIMHEVTRVFLGASSVLSNGTTYSRVGTAC 586
QA LRRLL + N V + F + +L TT +
Sbjct: 230 IQAELRRLLKS-----KPYENCLLVLLNVQNA--KAWNAFNLSCKILL--TTRFK-QVTD 279
Query: 587 VAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGM 623
A + + ++ S+ L
Sbjct: 280 FLSAATTTHISLDHHSMT--LTPD-EVKSLLLKYLDC 313
Score = 46.4 bits (109), Expect = 3e-05
Identities = 74/559 (13%), Positives = 142/559 (25%), Gaps = 198/559 (35%)
Query: 21 HSDPNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSENLSHLRSAAVAVPESS 80
++ P S + IE +D+ F+ + + + + LR A
Sbjct: 99 KTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK----LRQAL------L 145
Query: 81 SRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGW--FGRNSSGKFSAGSS 138
RP V + G G + + V S +V + + W +S
Sbjct: 146 ELRPA--KNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSP------- 195
Query: 139 FPGGGFDLTTVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQ 198
+ ++ + + + +H+ +A+ RR ++
Sbjct: 196 ------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS------IQAEL----RRLLK 239
Query: 199 EAQ--------------RAAKAATKG-KGGGGGVEVNNRESS-SNTLKAKTTKA------ 236
+A A K + + R ++ L A TT
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCK-----ILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 237 ----ERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSD 292
E + K + P +P S IA S
Sbjct: 295 SMTLTPDEVKSLL--LKYLDCRPQDLPREVLTT---------------NPRRLSIIAESI 337
Query: 293 RRGGDR------------------------PPE-RER-------KKDV--PPPRMQ---- 314
R G P E R+ P +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 315 ----FDDQGRVNKSKKRAVFNQ-----------------PEAKNRVELFR---------- 343
D VNK K ++ + + +N L R
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 344 ----------------------HLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAG 381
HL EH ++T FL+ + + A
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS---TAW 514
Query: 382 DVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAI 441
+ +G + L+ ++ I D + P +++ + FL + N I
Sbjct: 515 NASGSILNTLQQLKFYKPYICD-NDP-------KYERLVNAILDFLPKIEE------NLI 560
Query: 442 RFQKSRIAKLPLTLSETEA 460
+ + + ++ L ++E EA
Sbjct: 561 CSKYTDLLRIAL-MAEDEA 578
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.016
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 172 AAVEVHNEVSSSTAKAKTTKAER-RAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLK 230
A + + S K + + +R + + A + + + K ++ +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK---KDLEEWNQRQSEQV 131
Query: 231 AKTTKAERRETQEA---QR 246
K K R +A Q
Sbjct: 132 EKN-KINNRIADKAFYQQP 149
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage
pathway, translation initiation, oxidoreductase; 1.75A
{Saccharomyces cerevisiae} SCOP: c.124.1.5
Length = 191
Score = 34.1 bits (79), Expect = 0.079
Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 553 NAVSYIMHE----VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICC 602
++++Y + + F+GA ++ NG T +++GT +A++ F + +
Sbjct: 39 SSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVVA 92
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin,
metal-binding secreted; HET: NAG; 1.50A {Homo sapiens}
PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A*
3d5o_A* 2w08_A*
Length = 204
Score = 30.7 bits (69), Expect = 0.91
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 86 WDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFGRNSSGKFSAGSSFPGGGFD 145
W+ + + G L+ + + V ++ LG + GKF SF G +
Sbjct: 98 WESSSGIAEFWINGTPLVKKGLRQGYF-VEAQPKIVLGQEQDSYGGKFDRSQSFVG---E 153
Query: 146 LTTVKM 151
+ + M
Sbjct: 154 IGDLYM 159
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 29.8 bits (66), Expect = 3.0
Identities = 35/211 (16%), Positives = 62/211 (29%), Gaps = 7/211 (3%)
Query: 93 VGSYNPGNSLLGQ--PVSPNSSEVNSEASTTLGWFGRNSSGKFSAGSSFPGGGFDLTTVK 150
GS+N G+S G +P S S + G R S+G +++ SS G +
Sbjct: 312 TGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHS-- 369
Query: 151 MENFTQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKG 210
P + R EVS + + + + ++ + T
Sbjct: 370 --ESGSFRPDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREYHTEKLVTSKGDKELRTGK 427
Query: 211 KGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGN 270
+ G R S S T+ + + + G G G
Sbjct: 428 EKVTSGSTTTTRRSCSKTVTKTVIGPDGHKEVTKEVVTSEDGSDCPEAMDLGTLS-GIGT 486
Query: 271 ILRQPSQNRDDPAVGSTIAGSDRRGGDRPPE 301
+ ++ D+ A T + G P
Sbjct: 487 LDGFRHRHPDEAAFFDTASTGKTFPGFFSPM 517
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 29.8 bits (66), Expect = 3.6
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 162 PEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNN 221
P E G +V V S+TA+AK +A++ ++ + + + E N
Sbjct: 796 PRMYEEASGKEVEKVATAVLSTTARAK-ARAKKTKKEKGPNEEEKKKEHEEKEKERETNK 854
Query: 222 RESSSNTLKAKTTKAERRE 240
+ + +
Sbjct: 855 KGIKETKENDEEFYKNKYS 873
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 4.3
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 8/35 (22%)
Query: 444 QKSRIAKL--PLTLSETEAKAALCNDIDRFINEKI 476
+K + KL L L ++ AL I +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA------IKATM 46
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 28.7 bits (65), Expect = 4.7
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 480 DKVIVRHAATKVRDGDVLLTYGSSCVVE---MILLYAHELGKQFRVVVVD 526
D I+ ++ D+ L G+S VV M G V +
Sbjct: 199 DPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGV--PVAEFN 246
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 29.2 bits (64), Expect = 5.8
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 89 RVAVVGSYNPG-----NSLLGQPVSPNS 111
R+ V+G G N+L+G+ + P+
Sbjct: 71 RLLVLGDMKRGKSTFLNALIGENLLPSD 98
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.5 bits (63), Expect = 6.6
Identities = 2/42 (4%), Positives = 4/42 (9%), Gaps = 3/42 (7%)
Query: 297 DRPPERERKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNR 338
+ K P +
Sbjct: 26 ELENSSPELKAELRPLQ---FKSIREIDVAGGKKALAIFVPV 64
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 27.7 bits (62), Expect = 8.9
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 349 EHGSQLTDLESKFLELDSMHPAVYKV---GVQYLA--G--DVTGGNARCIA-MLRAFQEV 400
E S L +L +F +P +YKV G Y+ +A + E
Sbjct: 31 EVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVLLEFALRMHEE 90
Query: 401 INDYSTPPGKTL 412
+ ++ G+ +
Sbjct: 91 ASRVASSLGEPV 102
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 9.5
Identities = 27/207 (13%), Positives = 47/207 (22%), Gaps = 75/207 (36%)
Query: 140 PGGGFDLTTVKMENFTQLEGKKPE------AVPERGGGAAVEVHNEVS------SST--- 184
PG G T + + + + R V NE+
Sbjct: 1222 PGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSE 1281
Query: 185 -----AKAKTTKAERRAMQEAQRAAKAATKGKGGGGG------------------VEVNN 221
+T + A + + A + + V +
Sbjct: 1282 DQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVAS 1341
Query: 222 RESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNK-PVAAA--------GGAG----- 267
+S T ++ E+ K G+++GN G AG
Sbjct: 1342 FHGTS------TKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMN 1395
Query: 268 -----------PGNILRQPSQNRDDPA 283
PGN N D+
Sbjct: 1396 GALQILNSGIIPGNR------NADNVD 1416
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 27.9 bits (61), Expect = 9.9
Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 3/119 (2%)
Query: 24 PNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSENLSHLRSAAVAVPESSSRR 83
P P+ ++Q + V+ + P S +
Sbjct: 214 TGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKP 273
Query: 84 PMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFGRNSSGKFSAGSSFPGG 142
GSY PG+S P P S + G S+G ++ G PG
Sbjct: 274 GTSSIGNVNPGSYGPGSSGTWNPGRPEPG---SAGTWNPGRPEPGSAGTWNPGRPEPGS 329
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.372
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,450,300
Number of extensions: 584005
Number of successful extensions: 1306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1288
Number of HSP's successfully gapped: 42
Length of query: 630
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 531
Effective length of database: 3,937,614
Effective search space: 2090873034
Effective search space used: 2090873034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.5 bits)