RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006803
(630 letters)
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 274
Score = 142 bits (360), Expect = 4e-39
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 12/194 (6%)
Query: 427 LIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRH 486
+++ P S+ N RF + T + L + F+ + A + +
Sbjct: 54 VVKVNPSMASLYNLARF-----------IPVTNRRDILKSRALEFLRR-MEEAKRELASI 101
Query: 487 AATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS 546
A + DGDV++T+ S V I+ A E K+F+V++ +S P +EG L R L G+
Sbjct: 102 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 161
Query: 547 CTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606
+ E + +GA + +G ++ GT +A+ H +P + E YK
Sbjct: 162 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 221
Query: 607 FHERVQLDSICSNE 620
FH ++ + E
Sbjct: 222 FHPTLKSGDVMLME 235
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
[TaxId: 5664]}
Length = 374
Score = 120 bits (302), Expect = 2e-30
Identities = 43/240 (17%), Positives = 90/240 (37%), Gaps = 18/240 (7%)
Query: 401 INDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEA 460
+ R++ + + F++ RP ++++ N +R K+++ KL T + E
Sbjct: 69 TQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEV 128
Query: 461 KAALCNDIDRFINEKIILADKV-------IVRHAATKVRDGDVLLTYGSS--------CV 505
A + + + + I+ A + RD +LT ++
Sbjct: 129 AQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGT 188
Query: 506 VEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAK-GLSCTYTHINAVSYIMH--EV 562
++ GK RV ++RP ++G L + + CT A S +M ++
Sbjct: 189 ALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLNRKI 248
Query: 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELG 622
V +GA + NG T +++GT +A+ A V + + + + E
Sbjct: 249 DAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEER 308
>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
isomerase Ypr118W {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 402
Score = 111 bits (279), Expect = 3e-27
Identities = 36/264 (13%), Positives = 90/264 (34%), Gaps = 26/264 (9%)
Query: 383 VTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIR 442
+ G + + +D +T ++ + FL+ RP ++++ N++
Sbjct: 58 IVGSLSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLV 117
Query: 443 FQKSRIAKLPLTLSETEAKAALCNDI---DRFINEKIIL--ADKVIVRHAATKVRDGDVL 497
K+ + + + ++ D N K+ A +I +D +
Sbjct: 118 EIKNILKSSSDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQKDGFKDEFAV 177
Query: 498 LTYGSSCVVEMIL----------------LYAHELGKQFRVVVVDSRPKHEGQALLRRLL 541
LT ++ + + + V +++RP ++G L L
Sbjct: 178 LTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKCPRMGHVFPLETRPYNQGSRLTAYEL 237
Query: 542 AK-GLSCTYTHINAVSYIMHE----VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRV 596
+ T ++++Y + + F+GA ++ NG T +++GT +A++ F +
Sbjct: 238 VYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGI 297
Query: 597 PVLICCEAYKFHERVQLDSICSNE 620
+ + E
Sbjct: 298 KFFVVAPKTTIDNVTETGDDIIVE 321
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 340
Score = 95.2 bits (236), Expect = 5e-22
Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 16/214 (7%)
Query: 418 AKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKII 477
+ FL RP ++++ I R L E L + E+ +
Sbjct: 74 EHLKKAADFLASTRPTAVNLFVGIE----RALNAALKGESVEEVKELALREAEKLAEEDV 129
Query: 478 LADKVIVRHAATKVRDGDVLLTYGSSCVVEMI--------LLYAHELGKQFRVVVVDSRP 529
++ + + A + DGDV+LTY ++ + + + A E GK+ RV+ ++RP
Sbjct: 130 ERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRP 189
Query: 530 KHEGQALLRRLLAK-GLSCTYTHINAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTAC 586
++G L L + G+ T + V +M V +V +GA ++ + ++++GT
Sbjct: 190 LNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRD-AVFNKIGTYT 248
Query: 587 VAMVAHAFRVPVLICCEAYKFHERVQLDSICSNE 620
V++VA +P + F + E
Sbjct: 249 VSVVAKHHNIPFYVAAPKATFDWERTAKDVVIEE 282
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Length = 340
Score = 87.9 bits (217), Expect = 2e-19
Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 15/207 (7%)
Query: 427 LIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRH 486
L RP ++++ A+ R+ K+ ++ E + + + + I +K I ++
Sbjct: 82 LARTRPTAVNLFWALN----RMEKVFFENADRENLFEILENEALKMAYEDIEVNKAIGKN 137
Query: 487 AATKVRDGDVLLTYGSSCVVEMI--------LLYAHELGKQFRVVVVDSRPKHEGQALLR 538
A ++DG +LT+ ++ + + + A E GK+ RV ++RP +G L
Sbjct: 138 GAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTA 197
Query: 539 RLLAK-GLSCTYTHINAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFR 595
L K G+ N ++M + V +GA + NG T +++GT +A++A
Sbjct: 198 WELMKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNN 257
Query: 596 VPVLICCEAYKFHERVQLDSICSNELG 622
+P + ++ E
Sbjct: 258 IPFYVAAPVSTIDPTIRSGEEIPIEER 284
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 149
Score = 31.3 bits (70), Expect = 0.15
Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 10/131 (7%)
Query: 481 KVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRL 540
K+ + A + D V+ S I LG++ + + + +L
Sbjct: 8 KIAAKEALKFIEDDMVIGLGTGSTTAYFI----KLLGEKLKRGEISDIV-GVPTSYQAKL 62
Query: 541 LAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLI 600
LA ++ V I GA V N G A +R I
Sbjct: 63 LAIEHDIPIASLDQVDAIDV----AVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFI 118
Query: 601 C-CEAYKFHER 610
+ K +
Sbjct: 119 VLVDERKLVDY 129
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 247
Score = 29.2 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 479 ADKVIVRHAATKVRDGDVL-LTYGSSCVVEMILLYAHELG 517
K++ R A ++R G V + G + + I L A E G
Sbjct: 5 QRKLVARRALFEMRKGAVGNVGVGIA---DGIGLVAREEG 41
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 28.2 bits (62), Expect = 2.4
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 53 PVMIPPPRHHSENLSHLRSAAVAVPESSSRRPMWDDRVAVVGSYNP 98
V P E L + + + P D V VG +
Sbjct: 184 DVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIWEG 229
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Haemophilus
influenzae [TaxId: 727]}
Length = 147
Score = 27.1 bits (59), Expect = 3.8
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 481 KVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRL 540
K+ + A V+ ++ S V I + + + V S+ E
Sbjct: 8 KLAAQAALQYVKADRIVGVGSGSTVNCFI-EALGTIKDKIQGAVAASKESEELLRKQGIE 66
Query: 541 LAKGLSCTYTHI 552
+ + I
Sbjct: 67 VFNANDVSSLDI 78
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 58
Score = 25.0 bits (55), Expect = 5.2
Identities = 4/32 (12%), Positives = 14/32 (43%)
Query: 466 NDIDRFINEKIILADKVIVRHAATKVRDGDVL 497
+ + I + + + IV+ + ++ D +
Sbjct: 17 SQATKAIRQSAVKINGEIVKSGSVQISQEDEI 48
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 59
Score = 24.7 bits (54), Expect = 7.0
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 466 NDIDRFINEKIILADKVIVRHAATKVRDGDV 496
R I + D IVR+AA K+
Sbjct: 16 AIAGREIRGNRVTVDGEIVRNAAFKLLPEHD 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.372
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,201,291
Number of extensions: 101079
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 12
Length of query: 630
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 539
Effective length of database: 1,158,166
Effective search space: 624251474
Effective search space used: 624251474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.0 bits)