BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006804
(630 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225431130|ref|XP_002265926.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform
1 [Vitis vinifera]
Length = 625
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/644 (61%), Positives = 475/644 (73%), Gaps = 33/644 (5%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR R+SQFGSL K L S DADIIC QETKL R EL +D+VMADGYESFFS
Sbjct: 1 MKIVTYNVNGLRPRISQFGSLLKFLSSLDADIICVQETKLSRHELTADVVMADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS---------KI 111
CTRT+ KGR GYSGVATFCRVKS FSSTEVALP+AAEEGFTGLLE SG
Sbjct: 61 CTRTNSKGRVGYSGVATFCRVKSAFSSTEVALPIAAEEGFTGLLEKSGGFGTGKDEIPVK 120
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 171
EGLE+F+KDELLK+DSEGRC+ITDHGHF+LFN+YGPRADSEDT RIQFK FF +LQKR
Sbjct: 121 AEGLEEFAKDELLKVDSEGRCIITDHGHFVLFNIYGPRADSEDTERIQFKHTFFQILQKR 180
Query: 172 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
WE L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG FFDVFR+K
Sbjct: 181 WETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAK 240
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
HP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV ECDIL
Sbjct: 241 HPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQ 300
Query: 292 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 351
+KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P + G QQT
Sbjct: 301 FKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQT 360
Query: 352 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS 411
+ SVLMKR+ A+Q K+ + S S E+ + T CSE + RS + C S + G + SS
Sbjct: 361 IASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRSSQDCCISDLPSGDFLSS 417
Query: 412 SNQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQ 466
SN +SEG + +I + DS+N + + S I Q S +P V +KKA++SQ Q
Sbjct: 418 SNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TPGTV--TKKKARQSQCSQ 472
Query: 467 LSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCS 526
LSLKSFF K SNV V+N+ D SL Q + +S+ + NK + D
Sbjct: 473 LSLKSFFQKSSNVKD-----------GVDNAAADASLDQADESKSNQNPNKTSMGDDESK 521
Query: 527 VHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVA 586
++ ++ S + +Q +++N++AL+EW+RIQQLM+ SIPLCKGH EPCV+
Sbjct: 522 SSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVS 581
Query: 587 RVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 630
R+ KKPGP GRRF+VCARAEGPASNPE NCGYFKWA SKS+ +
Sbjct: 582 RLAKKPGPNHGRRFYVCARAEGPASNPETNCGYFKWAASKSRHR 625
>gi|255561291|ref|XP_002521656.1| ap endonuclease, putative [Ricinus communis]
gi|223539047|gb|EEF40643.1| ap endonuclease, putative [Ricinus communis]
Length = 586
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/605 (62%), Positives = 455/605 (75%), Gaps = 27/605 (4%)
Query: 32 IICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA 91
I+ + ETKLRRQEL SDLV+ADGYESFFSCTRT++KGRTGYSGVATFCRVKS FSS+EVA
Sbjct: 3 IVTYNETKLRRQELTSDLVIADGYESFFSCTRTNEKGRTGYSGVATFCRVKSAFSSSEVA 62
Query: 92 LPVAAEEGFTGLLETSGSK------IMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNV 145
LPV AEEGFTGL++ S + + +GLE+F KDELLKIDSEGRC+ITDHGHF+LFN+
Sbjct: 63 LPVGAEEGFTGLVDCSRNGKHEMPVVAQGLEEFDKDELLKIDSEGRCIITDHGHFVLFNL 122
Query: 146 YGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA 205
YGPRA+S+DT RI FKL F+++LQKRWE LL QGRRIFVVGDLNIAP A+DRCDA PDF
Sbjct: 123 YGPRAESDDTERIHFKLLFYNILQKRWESLLQQGRRIFVVGDLNIAPTAMDRCDADPDFE 182
Query: 206 KNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
KNEFRIWFRSMLV+SGG FFDVFRSKHP+RREAYTCWPSNTGAEQFNYGTRIDHILCAGP
Sbjct: 183 KNEFRIWFRSMLVKSGGPFFDVFRSKHPDRREAYTCWPSNTGAEQFNYGTRIDHILCAGP 242
Query: 266 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
CLHQ+HD Q H+FV+CH+ +CDILIDYKRWKPG+ RWKGG T+LEGSDHAPVY L E
Sbjct: 243 CLHQEHDFQVHDFVSCHMKDCDILIDYKRWKPGDTMRWKGGWGTKLEGSDHAPVYTSLVE 302
Query: 326 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTE 385
+P+IPQH TPSL++RYLP+I G QQTLVSVLMKR+ + Q S G++ ++
Sbjct: 303 IPDIPQHGTPSLSARYLPMIHGFQQTLVSVLMKRQASTQVSSSFSDGNVTIKA------- 355
Query: 386 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 445
C+E++ + L N C+ S + ++S+G + ++C+D ++ + S
Sbjct: 356 -CNESI-KGLYNNCNISDHSASDSSCATKDSDGAILRMEKHCKDFSDQTCSDSTIMLQSR 413
Query: 446 HISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 505
HI+ H + +KKA+KSQ QLSL+SFF + N T N+ D S SQ
Sbjct: 414 HINSMHTEGTKKKARKSQCSQLSLRSFFQRTPN-----------TRSGAENTALDISHSQ 462
Query: 506 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRR 565
E V S+ ++ D + G+NSS + DQDE +KE+NNVALLEW+R
Sbjct: 463 ENVSNSNSPPSETASQDDHNNTPGHCGLNSSSGTQDQDEINNGP-SEKEKNNVALLEWQR 521
Query: 566 IQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFS 625
IQQLM+ SIPLCKGHKEPCV+R+VKKPGPT G RF+VCARAEGPASNPEANCGYFKWA S
Sbjct: 522 IQQLMQNSIPLCKGHKEPCVSRIVKKPGPTCGHRFYVCARAEGPASNPEANCGYFKWASS 581
Query: 626 KSKQK 630
KS+QK
Sbjct: 582 KSRQK 586
>gi|224074261|ref|XP_002304326.1| predicted protein [Populus trichocarpa]
gi|222841758|gb|EEE79305.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/632 (62%), Positives = 466/632 (73%), Gaps = 21/632 (3%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIV+YNVNGLRQRVSQFGSL LL++FDADIICFQETKLRRQEL SDLV+ADGYESFFS
Sbjct: 5 IKIVSYNVNGLRQRVSQFGSLSNLLNTFDADIICFQETKLRRQELTSDLVIADGYESFFS 64
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
CTRT DKGRTGYSGVATFCRVKS FSSTEVALPVAAEEGFTG ++ K EGLE+F K
Sbjct: 65 CTRTKDKGRTGYSGVATFCRVKSAFSSTEVALPVAAEEGFTGFIDRC--KRNEGLEEFEK 122
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DEL+K+DSEGRCV+TDH HF+LFN+YGPRA +DT RI+FK++FF +LQKRWE LL +GR
Sbjct: 123 DELVKVDSEGRCVVTDHNHFVLFNLYGPRAAHDDTERIEFKMKFFKILQKRWENLLHEGR 182
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 240
R+FVVGDLNIAP A+DRCDA DF KNEFR WFRS+L+ SGG F DVFR+KHP+RREAYT
Sbjct: 183 RVFVVGDLNIAPTAMDRCDADSDFEKNEFRRWFRSILMMSGGLFVDVFRAKHPDRREAYT 242
Query: 241 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 300
CW S+TGAE FN+G+RIDHILCAGPCLHQ+HDLQ HNF++CHV ECDIL YKRWKPG++
Sbjct: 243 CWSSSTGAELFNFGSRIDHILCAGPCLHQEHDLQGHNFLSCHVKECDILTQYKRWKPGDS 302
Query: 301 PRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
RWKGG +LEGSDHAPVYM L E+ +IP+HSTP L++RYLP+I GVQQTLV++LMKR+
Sbjct: 303 TRWKGGRGIKLEGSDHAPVYMSLEEICDIPRHSTPPLSARYLPMIHGVQQTLVTLLMKRQ 362
Query: 361 VAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEF 420
A Q +S S + S+ + CSE++ RS N S CS + +E +
Sbjct: 363 AATQIQS---SRISSSFSDGDATIKACSESIKRSFNECSVSRPSTSPSCSLT-EEFDSAI 418
Query: 421 TKTIENCRD--SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSN 478
+K EN +D N T S H + +KK +KS+ QLSL+SFF K N
Sbjct: 419 SKRDENSKDLTDENQGCPDTTMILQSQHTKFVPAEGTKKKPRKSRCSQLSLRSFFQKSPN 478
Query: 479 VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC 538
+ S NS T+ S SQ E S + + D S S +N S
Sbjct: 479 L-----------STGAENSSTNASPSQAEPNTSSYSNGSHAPGDKSSSPRHCQ-LNPSAG 526
Query: 539 SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR 598
S QD K L++E+NNVALLEW+RIQQLM SIP+CKGHKEPCVAR+VKKPG TFG
Sbjct: 527 SQYQD-KGNDGSLEREKNNVALLEWQRIQQLMRNSIPVCKGHKEPCVARIVKKPGRTFGH 585
Query: 599 RFFVCARAEGPASNPEANCGYFKWAFSKSKQK 630
RFFVC+RAEGP SNPEANCGYFKWA SKS++K
Sbjct: 586 RFFVCSRAEGPVSNPEANCGYFKWASSKSQRK 617
>gi|449434154|ref|XP_004134861.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cucumis sativus]
gi|449491354|ref|XP_004158869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cucumis sativus]
Length = 611
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/637 (59%), Positives = 466/637 (73%), Gaps = 33/637 (5%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR R++QFGSL KLLDSFDADIIC QETKLRRQEL++DLV+ADGYE+F S
Sbjct: 1 MKIVTYNVNGLRPRITQFGSLAKLLDSFDADIICIQETKLRRQELRADLVIADGYETFVS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--GSKIM----EG 114
CTRTS+KGRTGYSGVATFCRVKS FSS EVALPV AEEGFTGLLE+S G + M EG
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVKSAFSSNEVALPVRAEEGFTGLLESSQDGKRTMAAVAEG 120
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
LE+FSK+ELLK+DSEGRC++TDHGHF+LFN+YGPRADS+D+ R+ FKL F++VLQKRWE
Sbjct: 121 LEEFSKEELLKLDSEGRCIVTDHGHFVLFNIYGPRADSDDSDRVLFKLNFYNVLQKRWEH 180
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234
LL G+R+FVVGDLNIAP ++DRCDAGPDF NEFR W RS++V GG F D+FR+KHP+
Sbjct: 181 LLHMGKRVFVVGDLNIAPTSMDRCDAGPDFENNEFRRWLRSLMVACGGRFIDIFRAKHPD 240
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
RR+AYTCWP +TGAE FNYGTRIDHILCAGPCLH ++L HN V CHV ECDIL YKR
Sbjct: 241 RRDAYTCWPQSTGAEVFNYGTRIDHILCAGPCLHHDNNLPGHNIVACHVMECDILSQYKR 300
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 354
WK GN+ RWK + +LEGSDHAPV L E+P+ PQHSTPSL++RY P I G+QQTLVS
Sbjct: 301 WKDGNSYRWKEERTVKLEGSDHAPVCASLLEIPDTPQHSTPSLSARYNPKIHGLQQTLVS 360
Query: 355 VLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQ 414
+L+KR+ A+ CK S S+S G+ +CS+ + S +N SG L CS +N
Sbjct: 361 MLLKRQAAEDSAPCKKS-----NSSSLGNLGNCSQGFNGSFDNGDQSGDLPSESCSLTNL 415
Query: 415 ESEGEFTKTIENCRDS-ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF 473
E+E +T E S A A+ T+T H + RK+ ++ Q+SLK+FF
Sbjct: 416 ETEDSLLETGECSGGSYAKEAACKTLTTHEPLHAKALPENPTRKRVRR--CSQMSLKAFF 473
Query: 474 HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGV 533
K S VS+D ++S D+S++ ++ S+ E+P S+ T S S +L
Sbjct: 474 QKNSVVSNDADSSNADSSISKGDTSESNSI---EIPRSN--------TQISDSGRQLEAY 522
Query: 534 NSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPG 593
Q + + +KE++ VA+LEWRRIQQ+M+ SIPLCKGHKE CVARVVKK G
Sbjct: 523 --------QGQSQINATPEKEKSGVAMLEWRRIQQVMQNSIPLCKGHKETCVARVVKKQG 574
Query: 594 PTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 630
P GRRF+VCARAEGPASNPEANCGYFKWA SKS+ K
Sbjct: 575 PNNGRRFYVCARAEGPASNPEANCGYFKWAASKSRHK 611
>gi|147789500|emb|CAN69587.1| hypothetical protein VITISV_019797 [Vitis vinifera]
Length = 632
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/629 (60%), Positives = 455/629 (72%), Gaps = 40/629 (6%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR R+SQFGSL K L S DADIIC QETKL R EL +D+VMADGYESFFS
Sbjct: 1 MKIVTYNVNGLRPRISQFGSLLKFLSSLDADIICVQETKLSRHELTADVVMADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS---------KI 111
CTRT+ KGR GYSGVATFCRVKS FSSTEVALP+AAEEGFTGLLE SG
Sbjct: 61 CTRTNSKGRVGYSGVATFCRVKSAFSSTEVALPIAAEEGFTGLLEKSGGFGTGKDEIPVK 120
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGHF-------ILFNVYGPRADSEDTVRIQFKLQF 164
EGLE+F+KDELLK+DSEGRC+ITDHGHF +LFN+YGPRADSEDT RIQFK F
Sbjct: 121 AEGLEEFAKDELLKVDSEGRCIITDHGHFADYGNWPVLFNIYGPRADSEDTERIQFKHTF 180
Query: 165 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF 224
F +LQKRWE L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG F
Sbjct: 181 FQILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPF 240
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
FDVFR+KHP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV
Sbjct: 241 FDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVK 300
Query: 285 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 344
ECDIL +KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P
Sbjct: 301 ECDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPT 360
Query: 345 IRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL 404
+ G QQT+ SVLMKR+ A+Q K+ + S S E+ + T CSE + RS + C S +
Sbjct: 361 VHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRSSQDCCISDLP 417
Query: 405 QGVYCSSSNQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKA 459
G + SSSN +SEG + +I + DS+N + + S I Q S +P V +KKA
Sbjct: 418 SGDFLSSSNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TPGTV--TKKKA 472
Query: 460 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP 519
++SQ QLSLKSFF K SNV V+N+ D SL Q + +S+ + NK
Sbjct: 473 RQSQCSQLSLKSFFQKSSNVKD-----------GVDNAAADASLDQADESKSNQNPNKTS 521
Query: 520 VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKG 579
+ D ++ ++ S + +Q +++N++AL+EW+RIQQLM+ SIPLCKG
Sbjct: 522 MGDDESKSSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQLMQNSIPLCKG 581
Query: 580 HKEPCVARVVKKPGPTFGRRFFVCARAEG 608
H EPCV+R+ KKPGP GRRF+VCARAE
Sbjct: 582 HGEPCVSRLAKKPGPNHGRRFYVCARAEA 610
>gi|356502118|ref|XP_003519868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Glycine max]
Length = 622
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/643 (59%), Positives = 464/643 (72%), Gaps = 34/643 (5%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV+YNVNGLRQR++QFGSLR LL+SFDADIICFQETKLRRQE+ +DLVMADGYESFFS
Sbjct: 1 MKIVSYNVNGLRQRIAQFGSLRNLLNSFDADIICFQETKLRRQEVTADLVMADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSKI---MEG 114
CTRTS KGRTGYSGV TFCRVKS FSS EV LP+AAEEGFTGLL +TS K+ ME
Sbjct: 61 CTRTSQKGRTGYSGVITFCRVKSAFSSNEVVLPLAAEEGFTGLLGNSQTSNDKLPFLMED 120
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
LE+FSKDELL +DSEGRC+ITDH HF+LFN+YGPRA +DT RIQFK +F+ +LQKRWE
Sbjct: 121 LEEFSKDELLSLDSEGRCIITDHTHFVLFNLYGPRAGGDDTERIQFKQKFYRILQKRWES 180
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234
LL QGRRIFVVGDLNIAP AIDRCDAGPDF NEFR WF+SML+E+GG F DVFR+KHP+
Sbjct: 181 LLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRKWFKSMLIENGGRFSDVFRAKHPD 240
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
RREAYTCW NTGAE FN+G+RIDHIL AG CLH+ DLQ H+F+ CHV ECDIL YKR
Sbjct: 241 RREAYTCWSQNTGAEVFNFGSRIDHILFAGSCLHELDDLQCHSFIRCHVKECDILTQYKR 300
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 354
KP + RWKGG S +LEGSDHAPV M L E+P++ HSTPSL++RY+P++ G+QQTLVS
Sbjct: 301 CKPESTLRWKGGHSVKLEGSDHAPVLMSLHEIPDVSLHSTPSLSARYVPMVHGIQQTLVS 360
Query: 355 VLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQ 414
VLMKR+V++ KSC+ + E + T + E V+R+ G S N+
Sbjct: 361 VLMKRQVSELMKSCE----MAQEDIAMDGTCEREEPVNRA-----------GSSTRSPNE 405
Query: 415 -----ESEGEFTKTIENCRDSANVASHSTITQGSSNHISPF-HVDRARKKAKKSQLGQLS 468
+ E + ++ + S + S GS N S +R+ KKA+ Q QLS
Sbjct: 406 CHFPPSQDFEVSSILKPNKLSGGSSQESVSKSGSENKKSTTRQCNRSNKKARNGQWSQLS 465
Query: 469 LKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS-LSQEEVPESHHHSNKIPVTDYSCSV 527
L+SFF K +N+ D +SI + VN+S TD S +Q E + +IP
Sbjct: 466 LRSFFQKSTNL--DKGSSIKEV---VNDSCTDYSNNNQAEPSQPSPRLQEIPTVCAHNGS 520
Query: 528 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 587
+ + +++ C D G +E++NVA LEW+RI+QLM+ SIP+CKGHKEPC+AR
Sbjct: 521 PKQYELDTDTCDPDLAGPNGSS-TKEEKSNVASLEWQRIKQLMQNSIPICKGHKEPCIAR 579
Query: 588 VVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 630
VVKK GP FGRRF+VCARAEGPASNPEANCGYFKWA SKS+ K
Sbjct: 580 VVKKQGPNFGRRFYVCARAEGPASNPEANCGYFKWASSKSRNK 622
>gi|359476825|ref|XP_003631894.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform
2 [Vitis vinifera]
Length = 596
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/613 (60%), Positives = 448/613 (73%), Gaps = 33/613 (5%)
Query: 32 IICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA 91
I+ + ETKL R EL +D+VMADGYESFFSCTRT+ KGR GYSGVATFCRVKS FSSTEVA
Sbjct: 3 IVTYNETKLSRHELTADVVMADGYESFFSCTRTNSKGRVGYSGVATFCRVKSAFSSTEVA 62
Query: 92 LPVAAEEGFTGLLETSGS---------KIMEGLEDFSKDELLKIDSEGRCVITDHGHFIL 142
LP+AAEEGFTGLLE SG EGLE+F+KDELLK+DSEGRC+ITDHGHF+L
Sbjct: 63 LPIAAEEGFTGLLEKSGGFGTGKDEIPVKAEGLEEFAKDELLKVDSEGRCIITDHGHFVL 122
Query: 143 FNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP 202
FN+YGPRADSEDT RIQFK FF +LQKRWE L QGRRIFVVGDLNIAPAAIDRCDAGP
Sbjct: 123 FNIYGPRADSEDTERIQFKHTFFQILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGP 182
Query: 203 DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 262
DF KNEFR WFRSMLVE GG FFDVFR+KHP+RREAYTCW S+TGAE+FNYG+RIDHIL
Sbjct: 183 DFEKNEFRRWFRSMLVECGGPFFDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILS 242
Query: 263 AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMC 322
+G CLHQ H LQ FVTCHV ECDIL +KRWKPGN PRWKGG S +LEGSDHAPV+M
Sbjct: 243 SGSCLHQDHCLQDRIFVTCHVKECDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMS 302
Query: 323 LGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTG 382
L ++P++ QHSTPSL++RY+P + G QQT+ SVLMKR+ A+Q K+ + S S E+ +
Sbjct: 303 LMDIPDVAQHSTPSLSARYVPTVHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENIT-- 360
Query: 383 DTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTK----TIENCRDSAN-VASHS 437
T CSE + RS + C S + G + SSSN +SEG + +I + DS+N + + S
Sbjct: 361 -TRSCSEILKRSSQDCCISDLPSGDFLSSSNLQSEGVIPRLDGPSICSISDSSNRIITAS 419
Query: 438 TITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 497
I Q S +P V +KKA++SQ QLSLKSFF K SNV V+N+
Sbjct: 420 IIRQTKS---TPGTV--TKKKARQSQCSQLSLKSFFQKSSNVKD-----------GVDNA 463
Query: 498 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 557
D SL Q + +S+ + NK + D ++ ++ S + +Q +++N+
Sbjct: 464 AADASLDQADESKSNQNPNKTSMGDDESKSSKMVELDVSASNQEQGVVISGSSPQRDKND 523
Query: 558 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANC 617
+AL+EW+RIQQLM+ SIPLCKGH EPCV+R+ KKPGP GRRF+VCARAEGPASNPE NC
Sbjct: 524 IALVEWQRIQQLMQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEGPASNPETNC 583
Query: 618 GYFKWAFSKSKQK 630
GYFKWA SKS+ +
Sbjct: 584 GYFKWAASKSRHR 596
>gi|357518059|ref|XP_003629318.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355523340|gb|AET03794.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 613
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/641 (57%), Positives = 461/641 (71%), Gaps = 39/641 (6%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV+YNVNGLRQR++QFGSLR LL+SFDADI+CFQETKL RQ++ +DLVM DGYESFFS
Sbjct: 1 MKIVSYNVNGLRQRITQFGSLRNLLNSFDADILCFQETKLSRQDVTADLVMVDGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSKI----ME 113
CTRTS KGRTGYSGV TFCRV+S FSS E ALP+AAEEGFTGLL +TS K+ E
Sbjct: 61 CTRTSQKGRTGYSGVITFCRVRSAFSSNEAALPLAAEEGFTGLLCSSQTSEGKLPFFMEE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 173
LEDFSKDELL +DSEGRCV+TDHGHF+LFN+YGPRA +DT RIQFK F+ +LQKR E
Sbjct: 121 DLEDFSKDELLNVDSEGRCVVTDHGHFVLFNIYGPRAGGDDTERIQFKKTFYRILQKRLE 180
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
LL QGRRIFVVGDLNIAP A+DRCDAGPDF KNEFR WFRSML+E+GG F DVFR+KHP
Sbjct: 181 SLLHQGRRIFVVGDLNIAPFAVDRCDAGPDFEKNEFRRWFRSMLIENGGRFSDVFRAKHP 240
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
++ +AYTCW ++GAE FNYG+RIDHILCAG CLH+ DLQSH+F+ CHV EC+IL YK
Sbjct: 241 DKMDAYTCWSQSSGAEVFNYGSRIDHILCAGSCLHKSDDLQSHSFIGCHVKECEILTQYK 300
Query: 294 RWKPG---NAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQ 350
R+KP ++ RWKGG S +LEGSDHAPV L +PE+ HSTPSL+SRY+P++ GVQQ
Sbjct: 301 RFKPESTLSSHRWKGGQSIKLEGSDHAPVCATLMGIPEVSLHSTPSLSSRYVPMVHGVQQ 360
Query: 351 TLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCS 410
+LVS+LMKR V+ +SCK + + + E E VD+ ++ C+ +
Sbjct: 361 SLVSLLMKRRVS---ESCKMAN---GDILTVSTCERIEEPVDKIGSSTCECDLF------ 408
Query: 411 SSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFH-VDRARKKAKKSQLGQLSL 469
NQ+SEG K E SA + S GS S + ++KKA+ SQ QLS+
Sbjct: 409 -PNQDSEGSILKPNEL---SAGSSQESVSKSGSVYEKSITQKCNESKKKARNSQSSQLSI 464
Query: 470 KSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHE 529
+SFF K +++ +N + D+ ++ +N+ + S ++ E+ + D+S + +
Sbjct: 465 RSFFQKSTSL----DNGVKDSCISYSNNEAEPSQPNSQLLET------CTIIDHSSNPGQ 514
Query: 530 LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVV 589
+N+ VC D E +E++NVA EW+RIQ+LM+ SIPLCKGHKEPC+ARVV
Sbjct: 515 -DEINADVCGQDLAEINNSS-RKEEKSNVASQEWQRIQKLMQNSIPLCKGHKEPCIARVV 572
Query: 590 KKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 630
KK G FGRRF+ CARAEGPASNPEANCGYFKWA SKSK K
Sbjct: 573 KKQGANFGRRFYTCARAEGPASNPEANCGYFKWATSKSKNK 613
>gi|297798308|ref|XP_002867038.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297312874|gb|EFH43297.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 616
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/620 (57%), Positives = 442/620 (71%), Gaps = 47/620 (7%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct: 1 MKIVTYNVNGLRQRVSQFESLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG-------SKIME 113
CTRT +KGRTGYSGVATFCRVKS SS E+ALPVAAEEG TGL+ ++ S + E
Sbjct: 61 CTRTCEKGRTGYSGVATFCRVKSASSSCEIALPVAAEEGITGLVNSNSRGGKNEMSAVGE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 173
GLE++ K+ELL+ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ +L++RWE
Sbjct: 121 GLEEYEKEELLRIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYDILERRWE 180
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
LL QGR++FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHP
Sbjct: 181 CLLRQGRKVFVVGDLNIAPFAVDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHP 240
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
ER++A+TCW S+TGAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CH+NEC+IL +YK
Sbjct: 241 ERKDAFTCWSSSTGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHINECEILTEYK 300
Query: 294 RWKPGN-APRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 352
R+K N A RWKGG+ T+L+GSDH PV+ ++P+IP+HSTP LASRYLP+I G QQTL
Sbjct: 301 RFKNENMATRWKGGLGTKLKGSDHVPVFTSFDDLPDIPEHSTPPLASRYLPMIYGFQQTL 360
Query: 353 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 412
VSV MK+ ++ K+ + S S ++SN++ D S L N GI CS
Sbjct: 361 VSVFMKKRANEEAKAIEVSCSSSSQSNASSSCGDISTG---PLRNCVSMGISLEKSCSFE 417
Query: 413 NQESEGEFT--KTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLK 470
N ES FT +T+ + N ++ G + +IS D RKKA+K Q QLSLK
Sbjct: 418 N-ESTCAFTEAETVASTGSIDNTCDGIRVSSGRAVNISR---DGDRKKARKIQSSQLSLK 473
Query: 471 SFFHKRSNVSHDDNNSITDTSLNVN---NSVTDTSLSQEEVPESHHHSNKIPVTDYSCSV 527
SFF S V + ++S + S + + S+T+ ++S +E E P T
Sbjct: 474 SFFTTNSKVKNGRDSSSSYVSSSPSSQAESITEPNVSSKEDGE--------PTTS----- 520
Query: 528 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 587
+ +QD+ K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVAR
Sbjct: 521 -----------TQEQDQSSSSA---KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVAR 566
Query: 588 VVKKPGPTFGRRFFVCARAE 607
VVKKPGPTFGRRF+VC+RAE
Sbjct: 567 VVKKPGPTFGRRFYVCSRAE 586
>gi|79610414|ref|NP_974691.2| endonuclease 2 [Arabidopsis thaliana]
gi|332661207|gb|AEE86607.1| endonuclease 2 [Arabidopsis thaliana]
Length = 610
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/615 (57%), Positives = 427/615 (69%), Gaps = 37/615 (6%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct: 1 MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG-------SKIME 113
CTRTS+KGRTGYSGVATFCRVKS SS E ALPV AEEG TGL+ ++ S + E
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVAE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 173
GLE++ K+ELL ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ VL++RWE
Sbjct: 121 GLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWE 180
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
LL QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHP
Sbjct: 181 CLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHP 240
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
ER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YK
Sbjct: 241 ERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYK 300
Query: 294 RWKPGNAP-RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 352
R+K N P RWKGG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTL
Sbjct: 301 RFKNENMPTRWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTL 360
Query: 353 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 412
VSV KR ++ K+ + S S +SN++ D S L N GI CS
Sbjct: 361 VSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFE 417
Query: 413 NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSF 472
N+ + G E + ++ + S + SS D RKKA+K Q QLSLKSF
Sbjct: 418 NKSTSG--VTEAETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSF 475
Query: 473 FHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 532
F S V N++ D+S + +S + + P + P T S E
Sbjct: 476 FTTNSKV-----NNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQ 526
Query: 533 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 592
SS K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKP
Sbjct: 527 TGSSA---------------KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKP 571
Query: 593 GPTFGRRFFVCARAE 607
GPTFGRRF+VC+RAE
Sbjct: 572 GPTFGRRFYVCSRAE 586
>gi|297735011|emb|CBI17373.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 287/390 (73%), Positives = 323/390 (82%), Gaps = 9/390 (2%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR R+SQFGSL K L S DADIIC QETKL R EL +D+VMADGYESFFS
Sbjct: 1 MKIVTYNVNGLRPRISQFGSLLKFLSSLDADIICVQETKLSRHELTADVVMADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS---------KI 111
CTRT+ KGR GYSGVATFCRVKS FSSTEVALP+AAEEGFTGLLE SG
Sbjct: 61 CTRTNSKGRVGYSGVATFCRVKSAFSSTEVALPIAAEEGFTGLLEKSGGFGTGKDEIPVK 120
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 171
EGLE+F+KDELLK+DSEGRC+ITDHGHF+LFN+YGPRADSEDT RIQFK FF +LQKR
Sbjct: 121 AEGLEEFAKDELLKVDSEGRCIITDHGHFVLFNIYGPRADSEDTERIQFKHTFFQILQKR 180
Query: 172 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
WE L QGRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG FFDVFR+K
Sbjct: 181 WETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAK 240
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
HP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV ECDIL
Sbjct: 241 HPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQ 300
Query: 292 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 351
+KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P + G QQT
Sbjct: 301 FKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQT 360
Query: 352 LVSVLMKREVAKQGKSCKFSGSLPAESNST 381
+ SVLMKR+ A+Q K+ + S S E+ +T
Sbjct: 361 IASVLMKRQKAEQVKTFEVSSSFSDENITT 390
>gi|242049990|ref|XP_002462739.1| hypothetical protein SORBIDRAFT_02g031100 [Sorghum bicolor]
gi|241926116|gb|EER99260.1| hypothetical protein SORBIDRAFT_02g031100 [Sorghum bicolor]
Length = 618
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 314/652 (48%), Positives = 414/652 (63%), Gaps = 59/652 (9%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR+LLD+ DADIICFQETKL RQ+L +D++MA+GYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSADVIMAEGYEAFVS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL------ETSGSKIM-- 112
C R+S KGR YSGVATFCRV S FSS EVALPVAAEEGFTGL ET G I+
Sbjct: 62 CNRSS-KGRGAYSGVATFCRVTSSFSSQEVALPVAAEEGFTGLQDYAKNSETVGDFIIAM 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL + ++++LL++D+EGRC+ITDHGHF+LFN+YGP + +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGEITREDLLRVDNEGRCIITDHGHFVLFNIYGPAVEEDDKERVRFKLLFYKIL 180
Query: 169 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 228
QKRWE LL G+R+FVVGDLNIAPA+IDRCDA P F K FR+W RSML E GG FFD F
Sbjct: 181 QKRWEHLLALGKRVFVVGDLNIAPASIDRCDAPPGFEKQMFRVWMRSMLREHGGPFFDAF 240
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288
RSKHPER AYTC+ GAE++NYG+RIDHIL +G CLH ++ HN CHV EC+I
Sbjct: 241 RSKHPERTGAYTCFNQKIGAEEYNYGSRIDHILISGSCLHHCDSVEYHNIFCCHVEECEI 300
Query: 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 348
+ +KR N +WKGG S +LEGSDH PVY+ L E+PE+P H+ P A+RYLP +RG
Sbjct: 301 MNHFKRGNSENLSKWKGGRSNKLEGSDHIPVYILLKEIPELPVHNIPPSAARYLPEVRGR 360
Query: 349 QQTLVSVLMKREVAKQGKSCKF--SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQG 406
QQ++VS L K ++ + + SG + S CS+N++ G+ G
Sbjct: 361 QQSIVSFLDKGKIYELQNAANLIQSGDIVGHSY-------CSDNMEN--RTIAKEGLTTG 411
Query: 407 VYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR--ARKKAKKSQL 464
+ + G + D + + I S+ + + +KK K +
Sbjct: 412 I----TQFAKGGNLPSLMRKGTDLDQLTNECIIGISHSSQRASLSSTKFVPKKKIKSNLS 467
Query: 465 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 524
Q ++KSFF + S VN S + ++L + K+ +T+ +
Sbjct: 468 SQPTIKSFFQRPG-------------SKTVNASTSTSTLVTP--------AEKVDLTNQT 506
Query: 525 C-----SVHELHGVNSSVCSHDQDEKKGKR-FLDKERNNVALLEWRRIQQLMETSIPLCK 578
C S+HE +S + DQD L +++N A LEW+RIQQ M+ ++P CK
Sbjct: 507 CVPNDDSLHENMQCTTSA-AEDQDNTNASSCSLSADKSNGAALEWQRIQQKMKMTLPRCK 565
Query: 579 GHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 630
GH+EPC+ R VKK GP GR F+VCARA+GPASNPEANCG+F+WA KSK+K
Sbjct: 566 GHREPCIPRSVKK-GPNIGRLFYVCARAQGPASNPEANCGHFQWAPGKSKEK 616
>gi|3036809|emb|CAA18499.1| putative protein [Arabidopsis thaliana]
gi|7270557|emb|CAB81514.1| putative protein [Arabidopsis thaliana]
Length = 641
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 330/615 (53%), Positives = 403/615 (65%), Gaps = 64/615 (10%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct: 1 MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG-------SKIME 113
CTRTS+KGRTGYSGVATFCRVKS SS E ALPV AEEG TGL+ ++ S + E
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVAE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE 173
GLE++ K+ELL ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ VL++RWE
Sbjct: 121 GLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWE 180
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
LL QGRR+FVVGDLNIAP A+DRC+AGPDF KNE
Sbjct: 181 CLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNE------------------------- 215
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YK
Sbjct: 216 --KDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYK 273
Query: 294 RWKPGNAP-RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 352
R+K N P RWKGG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTL
Sbjct: 274 RFKNENMPTRWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTL 333
Query: 353 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 412
VSV KR ++ K+ + S S +SN++ D S L N GI CS
Sbjct: 334 VSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFE 390
Query: 413 NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSF 472
N+ + G E + ++ + S + SS D RKKA+K Q QLSLKSF
Sbjct: 391 NKSTSG--VTEAETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSF 448
Query: 473 FHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 532
F S V N++ D+S + +S + + P + P T S E
Sbjct: 449 FTTNSKV-----NNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQ 499
Query: 533 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 592
SS K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKP
Sbjct: 500 TGSSA---------------KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKP 544
Query: 593 GPTFGRRFFVCARAE 607
GPTFGRRF+VC+RAE
Sbjct: 545 GPTFGRRFYVCSRAE 559
>gi|414886484|tpg|DAA62498.1| TPA: hypothetical protein ZEAMMB73_437105 [Zea mays]
Length = 621
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 304/647 (46%), Positives = 406/647 (62%), Gaps = 65/647 (10%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR LLD+ DADIICFQETKL RQ+L +D++MADGYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRCLLDALDADIICFQETKLSRQDLSADVIMADGYEAFVS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM-------- 112
C R+S KGR YSGVATFCRV S FSS EVALPVAAEEGFTGL + + +
Sbjct: 62 CNRSS-KGRGAYSGVATFCRVTSSFSSQEVALPVAAEEGFTGLQDYAKNSQTVGDFSIAM 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL + ++++LL++D+EGRC+ITDHGHF+LFN+YGP D +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGELTREDLLRVDNEGRCIITDHGHFVLFNIYGPAVDGDDKERVRFKLLFYKIL 180
Query: 169 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 228
QKRWE LL G+R+FVVGDLNIAPA+IDRCDA P F K FR W RSML E GG FFD F
Sbjct: 181 QKRWERLLALGKRVFVVGDLNIAPASIDRCDAAPGFEKQMFREWLRSMLREHGGPFFDAF 240
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288
RSKHPER AYTC+ GAE++NYG+RIDHIL +G CLH+ ++ H+ CHV EC+I
Sbjct: 241 RSKHPERTGAYTCFNQKIGAEEYNYGSRIDHILISGSCLHRCDSVEDHSIFCCHVEECEI 300
Query: 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 348
+ +KR N +WKGG S++LEGSDH PVY+ L E+PE+P H+ P A+RYLP IRG
Sbjct: 301 MNHFKRGNSENLSKWKGGRSSKLEGSDHIPVYILLKEIPELPVHNIPPSAARYLPEIRGR 360
Query: 349 QQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY 408
QQ++VS L K ++ + + + ++ D L++YC G+ +
Sbjct: 361 QQSIVSFLDKGKIYE-----------------LQNAANLIQSEDTVLDSYCSDGLENTIL 403
Query: 409 CSSSNQESEGEFTK-----------TIENCRDSANVASHSTITQGSSNHISPFHVDRARK 457
EF K T N + + S ++Q S + F +K
Sbjct: 404 AKKGLATGITEFAKGGNLPSLMCKGTDLNQWINEGLMGISHVSQKKSLSSTKF---VPQK 460
Query: 458 KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ-EEVPESHHHSN 516
K K++ Q ++KSFF + + + + + S T + +S + +PE+
Sbjct: 461 KIKRNLSSQPTIKSFFQRPGSKTVNASTSTLVTPAETLDLTNQACVSNGDTLPEN----- 515
Query: 517 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 576
+ T + V + ++S CS L +++N A LEW+RIQ+ M+ ++P
Sbjct: 516 -MQCTTSAAKVQD--NTDASSCS-----------LSTDKSNAAALEWQRIQKKMKMTLPR 561
Query: 577 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
CKGH EPC+ R VKK GP GR F+VCARA+GPASNPEANCG+F+WA
Sbjct: 562 CKGHSEPCIPRSVKK-GPNIGRLFYVCARAQGPASNPEANCGHFQWA 607
>gi|357159663|ref|XP_003578519.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Brachypodium distachyon]
Length = 624
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 310/646 (47%), Positives = 411/646 (63%), Gaps = 45/646 (6%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR+LLD+ DADIICFQETKL RQ+L D++MA+GYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFIS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS-GSKIM------- 112
C RT +GR YSGVATFCRV S FS EVALPVAAEEGFTGL ++ GS I+
Sbjct: 62 CNRTL-RGRGAYSGVATFCRVTSAFSCQEVALPVAAEEGFTGLQGSAEGSAIIGDFVLEM 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL +++ELL++D+EGRC+ITDHGHF+LFN+YGP +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGVITREELLRVDNEGRCIITDHGHFVLFNIYGPAVGEDDEERVRFKLLFYKIL 180
Query: 169 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 228
QKRW+FLL G+R+FVVGD+NIAP +IDRCDA P F K FR W RSML E+GG FFD F
Sbjct: 181 QKRWDFLLALGKRVFVVGDMNIAPGSIDRCDAPPGFEKQMFREWLRSMLRENGGPFFDAF 240
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288
RSKHPER AYTC+ GAE++NYG+RIDHIL +G C H + ++ H+ CHV +C+I
Sbjct: 241 RSKHPERVGAYTCFNQKVGAEEYNYGSRIDHILISGACFHHCNSMEDHSVFHCHVEDCEI 300
Query: 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 348
+ ++R N +WKGG S +LEGSDH PVY+ L +PE+P H+TPS A+RYLP IRG
Sbjct: 301 MNHFRRGDSENISKWKGGRSIKLEGSDHIPVYIILNGIPEVPVHNTPSTAARYLPEIRGR 360
Query: 349 QQTLVSVLMKRE--VAKQGKSCKFSGSLPAESNSTGDTEDCS---ENVDRSLNNYCDSGI 403
QQT+VS L+K + + S ES+ + D E+ S E + ++ + G
Sbjct: 361 QQTIVSFLLKGKNYELEDATGSNMSKDRIDESSCSDDLENKSISKEELPTAITEFSKGGN 420
Query: 404 LQGVYCSSSNQESEGEFTKTIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKAKKS 462
L + C N + + + ++ +A S S N + + KK K +
Sbjct: 421 LPSLTCKRRNLDHWVNEGSSGNSNNNNPTLLAPQSQKASFSGNKFT------SNKKNKHN 474
Query: 463 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 522
Q ++KSFF + + D ++NN V+ S + VP+ + P D
Sbjct: 475 LSSQPTIKSFFRQPETKTGD---------ADINNPVS----SVDTVPDMDEL--RSPKDD 519
Query: 523 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKE 582
S+ E H ++ DQD ++ NVA LEW+RIQ M+T++PLCKGH+E
Sbjct: 520 ---SLLE-HIHCTAAADEDQDNSDIPCSQSTDKCNVATLEWQRIQLRMKTTLPLCKGHRE 575
Query: 583 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 628
PC+ R VKK G GR F+VCARA+GP+SNPEANCG+F+WA KSK
Sbjct: 576 PCIPRSVKK-GSNIGRLFYVCARAQGPSSNPEANCGHFQWASVKSK 620
>gi|115480379|ref|NP_001063783.1| Os09g0536000 [Oryza sativa Japonica Group]
gi|50726587|dbj|BAD34221.1| AP endonuclease 2-like [Oryza sativa Japonica Group]
gi|113632016|dbj|BAF25697.1| Os09g0536000 [Oryza sativa Japonica Group]
gi|215736944|dbj|BAG95873.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 619
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 307/658 (46%), Positives = 399/658 (60%), Gaps = 70/658 (10%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR+LLD+ DADIICFQETKL RQ+L D++MA+GYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFIS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS------GSKIM-- 112
C R+S KGR YSGVATFCRV S FSS EVALPVAAEEGFTGL ET+ G ++
Sbjct: 62 CNRSS-KGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQETAKNSETIGDFVLVT 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL + +K+ELLK+D+EGRCVITDHGHF+LFN+YGP + +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKIL 180
Query: 169 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 228
Q+RWE LL G+R+FVVGDLNIAP++IDRCDA P F K FR W RSML E GG FFD F
Sbjct: 181 QRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAF 240
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288
RSKHPER AYTC+ GAE +NYG+RIDHIL +G C H + H+ CHV EC+I
Sbjct: 241 RSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEI 300
Query: 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 348
+ ++R N WKGG S++LEGSDH PVY+ L E+PE+P H+TPS A+RYLP IRG
Sbjct: 301 MDHFRRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGR 360
Query: 349 QQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY 408
QQ++VS L K + + + ++DR+ + C G+ +
Sbjct: 361 QQSIVSFLRKGMIYEHKDAM---------------------SMDRADESCCGGGLERKAI 399
Query: 409 CSSSNQESEGEFTK--------------TIENCRDSANVASHSTITQGSSNHISPFHVDR 454
+F+K + N S N + + + + + F +
Sbjct: 400 YKEEPPTDIAKFSKGNDLHSVIKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSK 459
Query: 455 A--RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH 512
A KK K + Q ++KSFF + + D + NS+ + + E H
Sbjct: 460 AVSNKKNKHNLSSQPTIKSFFQQPKSKPGDSS----------TNSIVTPPDTLHGMDELH 509
Query: 513 HHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMET 572
N C ++ + DQ L ++ N A LEW+RIQQ M+
Sbjct: 510 DPKNDCLPESIQC---------TTPATEDQGNSDVPCSLSTDKCNEATLEWQRIQQRMKM 560
Query: 573 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 630
++PLCKGH EPC+ R VKK G GR F+VCARA+GPASN EANCG+F+WA KSK+K
Sbjct: 561 TLPLCKGHHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQWATVKSKEK 617
>gi|218202527|gb|EEC84954.1| hypothetical protein OsI_32178 [Oryza sativa Indica Group]
Length = 619
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 310/651 (47%), Positives = 400/651 (61%), Gaps = 56/651 (8%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR+LLD+ DADIICFQETKL RQ+L D++MA+GYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFIS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS------GSKIM-- 112
C R+S KGR YSGVATFCRV S FSS EV LPVAAEEGFTGL ET+ G ++
Sbjct: 62 CNRSS-KGRGAYSGVATFCRVTSAFSSQEVGLPVAAEEGFTGLQETAKNSETIGDFVLVT 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL + +K+ELLK+D+EGRCVITDHGHF+LFN+YGP + +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKIL 180
Query: 169 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 228
Q+RWE LL G+R+FVVGDLNIAP++IDRCDA P F K FR W RSML E GG FFD F
Sbjct: 181 QRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAF 240
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288
RSKHPER AYTC+ GAE +NYG+RIDHIL +G C H + H+ CHV EC+I
Sbjct: 241 RSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEI 300
Query: 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 348
+ ++R N WKGG S++LEGSDH PVY+ L E+PE+P H+TPS A+RYLP IRG
Sbjct: 301 MDHFRRGNSKNMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGR 360
Query: 349 QQTLVSVLMK---------REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYC 399
QQ++VS L K + + +SC G ES + E ++ S N
Sbjct: 361 QQSIVSFLRKGMIYEHKDAMSMDRADESCCGGG---LESKAIYKEEPPTDIAKFSKGNDL 417
Query: 400 DSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKA 459
S I + + N+ S G + + + + + ++ SN KK
Sbjct: 418 HSVIKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSKTVSN-----------KKN 466
Query: 460 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP 519
K + Q ++KSFF + + D + NS+ + + E H N
Sbjct: 467 KHNLSSQPTIKSFFQQPKSKPGDSS----------TNSIVTPPDTLHGMDELHDPKNDCL 516
Query: 520 VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKG 579
C ++ + DQ L ++ N A LEW+RIQQ M+ ++PLCKG
Sbjct: 517 PESIQC---------TTPATEDQGNSDVPCSLSTDKCNEATLEWQRIQQRMKMTLPLCKG 567
Query: 580 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 630
H EPC+ R VKK G GR F+VCARA+GPASN EANCG+F+WA KSK+K
Sbjct: 568 HHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQWATVKSKEK 617
>gi|356561152|ref|XP_003548849.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase 2-like [Glycine max]
Length = 566
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/442 (59%), Positives = 330/442 (74%), Gaps = 12/442 (2%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV+YNVNGLRQR++QFGSLR LL+SFDADI+CFQET+LRRQE+ +DLVMA GYESFFS
Sbjct: 1 MKIVSYNVNGLRQRIAQFGSLRNLLNSFDADIVCFQETELRRQEVTADLVMAGGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSKI---MEG 114
CTRTS KGRTGYSGV TFCRVKS F S EV L +A +EGFTGLL +TS +K+ M
Sbjct: 61 CTRTSQKGRTGYSGVITFCRVKSAFLSNEVVLQLAEKEGFTGLLGNFQTSNNKLPFLMGD 120
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
L +F+KDELL +DSEGRC+ITDH HF+LFNVYG +A +DT RIQFK F+ +LQKRW
Sbjct: 121 LXEFTKDELLSLDSEGRCIITDHTHFVLFNVYGSQAGGDDTERIQFKQIFYRILQKRWGS 180
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234
LL QGRRIFVV DLNIAP AIDRCD GPDF KNE WF+SML+E+ G F DVFR+KHP+
Sbjct: 181 LLHQGRRIFVVVDLNIAPFAIDRCDIGPDFEKNEXVXWFKSMLIENWGQFSDVFRAKHPD 240
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
RREAYT W NTGAE FN+G+RIDHIL +G C H+ DLQ H+F+ C V ECDIL YKR
Sbjct: 241 RREAYTSWSQNTGAEVFNFGSRIDHILFSGSCXHEL-DLQCHSFIRCLVKECDILTQYKR 299
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL-- 352
KP + RWKGG S +LEGSDHAPV+M L E+P++ HSTP L++RY+P++ G+QQTL
Sbjct: 300 CKPESTLRWKGGRSVKLEGSDHAPVFMSLHEIPDVSLHSTPPLSARYVPMVHGIQQTLAT 359
Query: 353 --VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCS 410
+SVLMKR+V+K+ KS + + A +ST + ++ +++ ++ L+ +
Sbjct: 360 KHLSVLMKRQVSKKMKSFEMAQEDIA-MDSTCERKEPVNRAEKAKSSQWSQLSLRSFFQK 418
Query: 411 SSNQESEGEFTKTIENCRDSAN 432
S+N ++ ++C D +N
Sbjct: 419 SANLDNGSSVKVVNDSCTDYSN 440
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 117/179 (65%), Gaps = 8/179 (4%)
Query: 452 VDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPES 511
V+RA +KAK SQ QLSL+SFF K +N+ DN S VN+S TD S +Q E +
Sbjct: 396 VNRA-EKAKSSQWSQLSLRSFFQKSANL---DNGSSVKV---VNDSCTDYSNNQAEPSQP 448
Query: 512 HHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLME 571
+ P S + +G+++ C D G +E +NVA LEW+RIQQLM+
Sbjct: 449 SPRLQETPTVFAHSSSPKKYGLDTDTCDQDLAGPNGSS-TKEEMSNVASLEWQRIQQLMQ 507
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 630
SIP+CKG+KEPC+ARVVKK GP FGRRF+VCA AEGPASN EANCGYFKWA SKSK K
Sbjct: 508 NSIPICKGYKEPCIARVVKKQGPNFGRRFYVCAHAEGPASNLEANCGYFKWASSKSKNK 566
>gi|222641992|gb|EEE70124.1| hypothetical protein OsJ_30144 [Oryza sativa Japonica Group]
Length = 568
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 270/608 (44%), Positives = 355/608 (58%), Gaps = 70/608 (11%)
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--- 107
MA+GYE+F SC R+S KGR YSGVATFCRV S FSS EVALPVAAEEGFTGL ET+
Sbjct: 1 MAEGYEAFISCNRSS-KGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQETAKNS 59
Query: 108 ---GSKIM------EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
G ++ EGL + +K+ELLK+D+EGRCVITDHGHF+LFN+YGP + +D R+
Sbjct: 60 ETIGDFVLVTPVEEEGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERV 119
Query: 159 QFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV 218
+FKL F+ +LQ+RWE LL G+R+FVVGDLNIAP++IDRCDA P F K FR W RSML
Sbjct: 120 RFKLLFYKILQRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLR 179
Query: 219 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 278
E GG FFD FRSKHPER AYTC+ GAE +NYG+RIDHIL +G C H + H+
Sbjct: 180 EHGGPFFDAFRSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSI 239
Query: 279 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 338
CHV EC+I+ ++R N WKGG S++LEGSDH PVY+ L E+PE+P H+TPS A
Sbjct: 240 FPCHVEECEIMDHFRRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSA 299
Query: 339 SRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNY 398
+RYLP IRG QQ++VS L K + + + ++DR+ +
Sbjct: 300 ARYLPEIRGRQQSIVSFLRKGMIYEHKDAM---------------------SMDRADESC 338
Query: 399 CDSGILQGVYCSSSNQESEGEFTK--------------TIENCRDSANVASHSTITQGSS 444
C G+ + +F+K + N S N + + +
Sbjct: 339 CGGGLERKAIYKEEPPTDIAKFSKGNDLHSVIKRKIRDQLLNEGSSGNSHNSTAALLATQ 398
Query: 445 NHISPFHVDRA--RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS 502
+ + F +A KK K + Q ++KSFF + + D + NS+
Sbjct: 399 SRKASFSCSKAVSNKKNKHNLSSQPTIKSFFQQPKSKPGDSS----------TNSIVTPP 448
Query: 503 LSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE 562
+ + E H N C ++ + DQ L ++ N A LE
Sbjct: 449 DTLHGMDELHDPKNDCLPESIQC---------TTPATEDQGNSDVPCSLSTDKCNEATLE 499
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
W+RIQQ M+ ++PLCKGH EPC+ R VKK G GR F+VCARA+GPASN EANCG+F+W
Sbjct: 500 WQRIQQRMKMTLPLCKGHHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQW 558
Query: 623 AFSKSKQK 630
A KSK+K
Sbjct: 559 ATVKSKEK 566
>gi|168059759|ref|XP_001781868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666675|gb|EDQ53323.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 259/646 (40%), Positives = 353/646 (54%), Gaps = 84/646 (13%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+IVTYNV LR R+ +L+ LDS ++DIIC QETKL RQEL +++ +ADGYESFFS
Sbjct: 1 MRIVTYNVFSLRARLVPPRTLKSFLDSLESDIICLQETKLTRQELTAEIAVADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIME------- 113
CTRT KGR YSGVATFCR T A+PVAA+EGFTG ++ +
Sbjct: 61 CTRTVSKGRVRYSGVATFCR-------TPTAVPVAADEGFTGAQSSTHQTNYKNDHARVG 113
Query: 114 ------GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHV 167
+E+ S+ +LL++D EGRC++TDHG F+LFN+YGP ++ R +FKL+F+
Sbjct: 114 CYEEVLNMENMSRQDLLQLDWEGRCLVTDHGSFVLFNLYGPSVGPDNEERYEFKLRFYRA 173
Query: 168 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC--DAGPDFAKNEFRIWFRSMLVESGGSFF 225
LQ RWE LL GRR+ VGD NI+P ID C D+ PDF K+ R WFRS L +GG F
Sbjct: 174 LQNRWEGLLKNGRRVIAVGDFNISPFPIDSCHSDSNPDFDKSSIRQWFRSQLRANGGPFV 233
Query: 226 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD---------LQSH 276
DVFR HP R AYT W +G+E+FNYGTR+D I+ AG C HQ +SH
Sbjct: 234 DVFREIHPIREGAYTFWNQMSGSEEFNYGTRLDLIIAAGGCFHQVRSEESNSLLKAEESH 293
Query: 277 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 336
+F TC V +CDIL+++KR+K + PR G + +L+GSDH PVY+ L P + QH P
Sbjct: 294 HFGTCEVEDCDILLEFKRFKADSVPRRGGEKTQKLDGSDHVPVYVQLRPQPPLEQHDVPP 353
Query: 337 LASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLN 396
LA+R++P IRG QQ++ S L KR SC + A+ +
Sbjct: 354 LAARFMPEIRGRQQSIASFLQKR-------SCSLIMDIEAQKETKPRLS----------- 395
Query: 397 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR 456
L C N +F K+ + + S + T+G N + A
Sbjct: 396 -------LPTATCVRKNPPKVTKFLKSQNSKQKSLHSFFMLPTTKGKENTEAANAFKLAF 448
Query: 457 KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN 516
+ + L + SL+ N HD ++ +T+ +S +SL Q+ ES +H
Sbjct: 449 QDSDSETLLKPSLEQSQTFVINSPHDGDSQ--ETNAEPTDSSNTSSLKQDCTCESQNH-- 504
Query: 517 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 576
+P +V + + +EK A +EW+RIQ+ M +P+
Sbjct: 505 -VP------------EAVETVETAETNEKLS-----------AKIEWQRIQKTMMNRVPM 540
Query: 577 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
C GH EPC V+KKPGP GR+F CARA+GP+SNPEA C YFKW
Sbjct: 541 CSGHNEPCATYVMKKPGPNHGRKFHCCARAQGPSSNPEAKCKYFKW 586
>gi|302820698|ref|XP_002992015.1| hypothetical protein SELMODRAFT_134604 [Selaginella moellendorffii]
gi|300140137|gb|EFJ06864.1| hypothetical protein SELMODRAFT_134604 [Selaginella moellendorffii]
Length = 558
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/379 (55%), Positives = 258/379 (68%), Gaps = 26/379 (6%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+IV+YNVNGLR R+S SLR LDS DADIIC QETK+RRQEL +D+ GYESFFS
Sbjct: 1 MRIVSYNVNGLRARLSPARSLRAFLDSLDADIICLQETKIRRQELTADIATPQGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG------ 114
CTRT KGR GYSGVATFC+V+ VALPVAAEEGFTGLL + ++ EG
Sbjct: 61 CTRTVKKGRLGYSGVATFCKVEC---GNNVALPVAAEEGFTGLL--TSARAGEGDKEFWL 115
Query: 115 --------LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+E F++ ELL +D+EGRC++TDHGHF+LFNVYGP D R FKL F+
Sbjct: 116 GSYDPVLTVEGFTRQELLDLDNEGRCIVTDHGHFVLFNVYGPNVGCGDAERQDFKLNFYQ 175
Query: 167 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFD 226
VLQ R E +L QGRRI +VGDLNI+P ID CD GP+F + R WFRS+LV GG+F D
Sbjct: 176 VLQCRLESILKQGRRIIIVGDLNISPYPIDSCDPGPEFDTSPSRQWFRSLLVSEGGAFSD 235
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSH------NFV 279
FR HPER EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH F
Sbjct: 236 AFRVFHPERAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQSPDGSHGNSSCDGFA 295
Query: 280 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 339
C + CDIL+++KR K PRW GG S +L+GSDHAPV + L +P IP H P LA+
Sbjct: 296 KCGTDMCDILLEFKRAKLDTLPRWSGGRSLKLDGSDHAPVILQLKHLPSIPPHEAPQLAA 355
Query: 340 RYLPIIRGVQQTLVSVLMK 358
R++P +RG QQ++VS+ K
Sbjct: 356 RFMPELRGRQQSIVSIFQK 374
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 460 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN--K 517
K +L Q L F ++R H+ ++ ++ T + V+ + + ++ PES ++N +
Sbjct: 404 KLQRLSQSRLTRFCYQR----HESSDKMSCTEVAVHGQSSSLTDEIQQSPESCDNNNCSE 459
Query: 518 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 577
+ S S+ ++ + S EK W R++ LM ++PLC
Sbjct: 460 VAACGESASLMDMSDETPTESSQQSLEKSAA-------------GWERLKSLMSRNLPLC 506
Query: 578 KGHKEPCVARVVKKPGPTFGRRFFVCARAE 607
KGH EPCV R VKK GP GR F+VCARA+
Sbjct: 507 KGHGEPCVVRTVKKAGPNLGRGFYVCARAK 536
>gi|302762180|ref|XP_002964512.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
gi|300168241|gb|EFJ34845.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
Length = 540
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/379 (54%), Positives = 258/379 (68%), Gaps = 26/379 (6%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+IV+YNVNGLR R+S SLR LDS DADIIC QETK+RRQEL +D+ GYESF S
Sbjct: 1 MRIVSYNVNGLRARLSPARSLRAFLDSLDADIICLQETKIRRQELTADIATPQGYESFIS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG------ 114
CTRT KGR GYSGVATFC+V+ VALPVAAEEGFTGLL + ++ EG
Sbjct: 61 CTRTVKKGRLGYSGVATFCKVEC---GNNVALPVAAEEGFTGLL--TSARAGEGDKEFWL 115
Query: 115 --------LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+E F++ ELL +D+EGRC++TDHGHF+LFN+YGP D R FKL F+
Sbjct: 116 GSYDPVLTVEGFTRQELLDLDNEGRCIVTDHGHFVLFNIYGPNVGCGDAERQDFKLNFYK 175
Query: 167 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFD 226
VLQ R E +L QGRRI +VGDLNI+P ID CD GP+F + R WFRS+LV GG+F D
Sbjct: 176 VLQCRLESILKQGRRIIIVGDLNISPYPIDSCDPGPEFDTSPSRQWFRSLLVSEGGAFSD 235
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSHN------FV 279
FR HPER EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH+ F
Sbjct: 236 AFRVFHPERAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQSPDGSHDNSSCDGFA 295
Query: 280 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 339
C + CDIL+++KR K PRW GG S +L+GSDHAPV + L +P IP H P LA+
Sbjct: 296 KCGTDMCDILLEFKRAKLDTLPRWSGGRSLKLDGSDHAPVILQLKHLPSIPPHEAPQLAA 355
Query: 340 RYLPIIRGVQQTLVSVLMK 358
R++P +RG QQ+++S+ K
Sbjct: 356 RFMPELRGRQQSILSIFQK 374
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 460 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN--K 517
K +L Q L F ++R H+ ++ ++ T + V+ + + ++ PES ++N K
Sbjct: 404 KLQRLSQSRLTGFCYQR----HESSDKMSCTEVAVHGQSSSLTDEIQQSPESCDNNNLSK 459
Query: 518 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 577
+ S S+ ++ + S EK W R++ LM ++PLC
Sbjct: 460 VAACGESASLMDMSDETPTESSQQSLEKSAA-------------GWERLKSLMSRNLPLC 506
Query: 578 KGHKEPCVARVVKKPGPTFGRRFFVCARAE 607
KGH EPCV R VKK GP GR F+VCARA+
Sbjct: 507 KGHGEPCVVRTVKKAGPNLGRGFYVCARAK 536
>gi|22329202|ref|NP_195329.2| endonuclease 2 [Arabidopsis thaliana]
gi|17064948|gb|AAL32628.1| putative protein [Arabidopsis thaliana]
gi|20259962|gb|AAM13328.1| putative protein [Arabidopsis thaliana]
gi|332661206|gb|AEE86606.1| endonuclease 2 [Arabidopsis thaliana]
Length = 408
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/437 (50%), Positives = 278/437 (63%), Gaps = 30/437 (6%)
Query: 195 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 255 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWKGGMSTRLEG 313
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P RWKGG+ T+ +G
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPTRWKGGLVTKFKG 120
Query: 314 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 373
SDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++ K+ + S S
Sbjct: 121 SDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCS 180
Query: 374 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
+SN++ D S L N GI CS N+ + G E + ++
Sbjct: 181 SSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGSI 235
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ S + SS D RKKA+K Q QLSLKSFF S V N++ D+S +
Sbjct: 236 DNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSSS 290
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 553
+S + + P + P T S E SS K
Sbjct: 291 YVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA---------------K 331
Query: 554 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 613
++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAEGP+SNP
Sbjct: 332 QKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGPSSNP 391
Query: 614 EANCGYFKWAFSKSKQK 630
EANCGYFKWA SK + K
Sbjct: 392 EANCGYFKWASSKFRDK 408
>gi|170665738|gb|ACB29408.1| endonuclease [Arabidopsis thaliana]
Length = 408
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 274/440 (62%), Gaps = 36/440 (8%)
Query: 195 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 255 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWKGGMSTRLEG 313
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR N P RWKGG+ T+L+G
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRXXNENMPTRWKGGLVTKLKG 120
Query: 314 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 373
SDH PV++ ++P+IP+HST L SRYLP+I G QQTLVSV KR ++ K + S S
Sbjct: 121 SDHVPVFISFDDLPDIPEHSTXPLXSRYLPMIYGFQQTLVSVFKKRRANEEAKVIEVSCS 180
Query: 374 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
++SN++ D S L N GI CS N E T + A
Sbjct: 181 SSSQSNASSICGDISTG---PLRNCGSMGISLEKSCSFEN-----ESTSVVTEAETVATT 232
Query: 434 ASHSTITQG-SSNHISPFHVDR--ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 490
S ++ G + + ++ R RKKA+K Q QLSLKSFF S V N++ D+
Sbjct: 233 GSIDNLSDGIRAPSVRAVNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDS 287
Query: 491 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRF 550
S + +S + + P + P T S E SS
Sbjct: 288 SSSYVSSSPSSQVESITEPNVSRKDDSDPTT----STQEQDQTGSSA------------- 330
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 610
K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAEGP+
Sbjct: 331 --KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGPS 388
Query: 611 SNPEANCGYFKWAFSKSKQK 630
NPEANCGYFKWA SK + K
Sbjct: 389 CNPEANCGYFKWASSKFRDK 408
>gi|227202652|dbj|BAH56799.1| AT4G36050 [Arabidopsis thaliana]
Length = 409
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 204/414 (49%), Positives = 258/414 (62%), Gaps = 30/414 (7%)
Query: 195 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 255 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWKGGMSTRLEG 313
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P RWKGG+ T+ +G
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPTRWKGGLVTKFKG 120
Query: 314 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 373
SDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++ K+ + S S
Sbjct: 121 SDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCS 180
Query: 374 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
+SN++ D S L N GI CS N+ + G E + ++
Sbjct: 181 SSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGSI 235
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ S + SS D RKKA+K Q QLSLKSFF S V N++ D+S +
Sbjct: 236 DNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSSS 290
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 553
+S + + P + P T S E SS K
Sbjct: 291 YVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA---------------K 331
Query: 554 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 607
++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 332 QKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 385
>gi|260798967|ref|XP_002594471.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
gi|229279705|gb|EEN50482.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
Length = 561
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 212/662 (32%), Positives = 299/662 (45%), Gaps = 133/662 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T+N+NG+R L+++LDS DADI+C QETK+ R +L + +GY S+FS
Sbjct: 1 MRILTWNINGVRATKE---PLKQVLDSLDADIVCLQETKVTRDQLDEASAIVEGYSSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED--- 117
+R R+GYSGVAT+C+ + A P+ AEEG TGLL + + G
Sbjct: 58 FSRV----RSGYSGVATYCK--------DGATPIKAEEGLTGLLTNQKEEDIIGCYGDQT 105
Query: 118 -FSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFFHV 167
F++DEL +D EGR VIT H + NVY PRAD E R FKL+F+ +
Sbjct: 106 MFTEDELRLLDKEGRAVITQHTIRDTDGKECSLAVINVYCPRADPEKEERKDFKLRFYRL 165
Query: 168 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVES--- 220
LQ R + LL G + V+GD+N + ID CD PD F++N R W L++
Sbjct: 166 LQTRAQALLQAGSHVIVLGDVNTSHKPIDHCD--PDDIEYFSENPGRKWLDQFLLDPHQT 223
Query: 221 ------------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 268
GG F D FR HP +R A+TCW + TGA Q NYGTRID+I L+
Sbjct: 224 GDSGSSESEKGPGGYFVDTFRFFHPTQRSAFTCWSTVTGARQTNYGTRIDYIFANRALLN 283
Query: 269 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE 328
Q D C I+ + +EGSDH PV L +
Sbjct: 284 QFQD-------------CTIMPE-------------------VEGSDHCPVRGELACIV- 310
Query: 329 IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCS 388
+ P+L S+Y+P G QQ L + K K+G++ + S + S+S G ++ S
Sbjct: 311 VASGKCPALCSKYMPEFVGKQQKLSAFFTK---VKKGENGEEKSSQDSVSSSQGTSDGHS 367
Query: 389 ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHIS 448
E CS + E + + A H
Sbjct: 368 E------------------ICSQQSSSQSWENHSSESEGSSIISTAKHG----------- 398
Query: 449 PFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEV 508
R KK K Q Q +L SFF +++ + D+ + N D +
Sbjct: 399 -----RGMKKQKTDQGKQGTLLSFFGRKTGIEADEKRKANTLDVTQENPERDVACENVVS 453
Query: 509 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 568
+S H SN D S H N K + ++N A W+ + +
Sbjct: 454 SQSVHPSNSSVDVDDSVRKESKHAEND----------KSTVEMKPKQNQAAF--WKTVLK 501
Query: 569 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 628
CKGH+EPCV R VKK GP FG++F+VCAR +G +SNP A C +F+W S+ K
Sbjct: 502 GPPPPP-PCKGHREPCVLRTVKKQGPNFGKQFYVCARPQGHSSNPAARCDHFQWV-SRGK 559
Query: 629 QK 630
K
Sbjct: 560 DK 561
>gi|410900065|ref|XP_003963517.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Takifugu rubripes]
Length = 558
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 212/656 (32%), Positives = 293/656 (44%), Gaps = 137/656 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++VT+N+NG+R + G ++K LDS DADIIC QETK+ R L + + DGY S+FS
Sbjct: 1 MRVVTWNINGIR---TFRGGIKKALDSLDADIICVQETKVTRDLLDAQTAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+C+ + A P AAEEG TGLL T + +F
Sbjct: 58 YSR----GRSGYSGVATYCK--------DAATPFAAEEGLTGLLTTHEGAVGCYGNQAEF 105
Query: 119 SKDELLKIDSEGRCVITDHG--------HFILFNVYGPRADSEDTVRIQFKLQFFHVLQK 170
S+DEL +D+EGR VIT H + NVY PRAD E R QFKL F+ +LQ+
Sbjct: 106 SRDELQMLDNEGRAVITQHKVNCQDKEEALTVINVYCPRADPEKPERKQFKLHFYQLLQR 165
Query: 171 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFR-------------- 214
R E +L G + V+GD+N + ID CD DF +N R W
Sbjct: 166 RAEAILKDGSHVIVLGDINTSHQRIDHCDPSDKDDFDENPGRKWLNVFLHGVGQEEEAVE 225
Query: 215 --------SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
S L SGG F D FR HP R A+TCW + TGA Q NYGTRID+I
Sbjct: 226 AAEFSEVISTLPGSGGKFVDTFRYFHPTRANAFTCWSTLTGARQTNYGTRIDYIFA---- 281
Query: 267 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
+H L FV DI+ + +EGSDH PV+ L
Sbjct: 282 --DRH-LAKGQFVA-----ADIMPE-------------------VEGSDHCPVWGQL-SC 313
Query: 327 PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTED 386
+P P L +RYLP G QQ L ++ + SLP +S +
Sbjct: 314 SLLPSTKPPPLCTRYLPEFAGKQQKLSHFFVRADQ---------KSSLPEQSKT------ 358
Query: 387 CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNH 446
L G S +E + + + S S + +G
Sbjct: 359 -----------------LPG---SQEEEEKRENLSPVADKTGQKRLLKSDSALPKG---- 394
Query: 447 ISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE 506
+ K K + Q SL SFF + V++ + T N D +++
Sbjct: 395 -------KKTKSVKTASNPQGSLLSFF--KPKVTNVIASGDTPVGQRENRQKLD-AVAPS 444
Query: 507 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 566
++ S V+ + EL S CS ++ ++ + + + + W+ +
Sbjct: 445 QI------SRTADVSATAGGEAELRCNGSQPCSSTEENEQRTPTPQAAKKSSSSVFWKSV 498
Query: 567 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
P CK H EPC R VKK GP GR+FFVCAR +G SNP+A C +F+W
Sbjct: 499 LH-GPPPPPSCKVHGEPCALRTVKKEGPNMGRQFFVCARPQGHVSNPDARCNFFEW 553
>gi|432866619|ref|XP_004070893.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Oryzias latipes]
Length = 553
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 210/654 (32%), Positives = 286/654 (43%), Gaps = 138/654 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NG+R + G +++ LD DADIIC QETK+ R L + DGY S+FS
Sbjct: 1 MKIVTWNINGIR---TFKGGIKRALDLLDADIICVQETKVTRDLLDEGSAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+CR + A P+AAEEG TGLL + F
Sbjct: 58 YSR----GRSGYSGVATYCR--------DSATPLAAEEGLTGLLTNHDGAVGCYGDQTGF 105
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
S +EL +D+EGR +IT H + NVY PRAD E R QFKLQF+ +LQ
Sbjct: 106 SSEELQLLDNEGRAMITKHRIMCQDQEEKTLTVINVYCPRADPEKPERKQFKLQFYKLLQ 165
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSMLVE-------- 219
R E +L G + V+GD+N + ID CD +F N R W L
Sbjct: 166 HRAEAVLKAGSHVIVLGDVNTSHRPIDHCDPCETNEFEDNPGRKWLNEFLHNGSPEDVLD 225
Query: 220 ---------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+ G F D FR HP R A+TCW + TGA Q NYGTRID+I
Sbjct: 226 EDPKQAPELNSGRFVDTFRLFHPTRTNAFTCWSTLTGARQTNYGTRIDYI---------- 275
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
F C + E + + +EGSDH PV+ L +P
Sbjct: 276 -------FADCKLAEEQFVAT--------------DIMPEVEGSDHCPVWGKLS-CSVLP 313
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN 390
P L +RYLP G QQ L L+K V ++ + LP + + ++ +EN
Sbjct: 314 SSKPPPLCTRYLPEFVGKQQKLSRFLIK--VDQKSSQPEQKSVLPG----SQEDDERTEN 367
Query: 391 VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPF 450
V+ S N +L A+ S I +G
Sbjct: 368 VNPSGANSVKKRLL-----------------------------AADSVIPKG-------- 390
Query: 451 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 510
+ K S Q +L SFF + D T TS + + S P
Sbjct: 391 ---KKTKMQSSSSKPQGNLLSFFKPKVANLKDQEKETTFTSSQSDQKAKASRDSSTVTPA 447
Query: 511 SHHHSNKIP-VTDYSCSVHELHGVNSSVCSHDQDEKKGK-RFLDKERNNVALLEWRRIQQ 568
+ + + + C+V D D++K + + +L W+ +
Sbjct: 448 AAEETERASDASSQRCTV------------LDADKQKNTVQPTVAQSKGASLGFWKSVLH 495
Query: 569 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
P CK H+EPCV R VKK GP G++FFVCAR +G ASNPEA C +F+W
Sbjct: 496 -GPPPAPSCKVHREPCVLRTVKKEGPNVGKQFFVCARPQGHASNPEARCNFFEW 548
>gi|348503254|ref|XP_003439180.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Oreochromis niloticus]
Length = 563
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 214/660 (32%), Positives = 295/660 (44%), Gaps = 138/660 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+N+NG+R + G ++K LDS DAD+IC QETK+ R L + + DGY S+FS
Sbjct: 1 MKVVTWNINGIR---AFRGGIKKALDSLDADVICIQETKVTRDLLDERIAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+C+ E A P AAEEG TGLL + +F
Sbjct: 58 YSR----GRSGYSGVATYCK--------ESATPFAAEEGLTGLLVNHKDAVGCYGDHTEF 105
Query: 119 SKDELLKIDSEGRCVITDHGH--------FILFNVYGPRADSEDTVRIQFKLQFFHVLQK 170
S +EL +D+EGR VIT H + NVY PRAD E R +FKLQF+++LQ
Sbjct: 106 SSEELQLLDNEGRAVITQHKIKCQDKEKILTVINVYCPRADPEKPERKRFKLQFYNLLQS 165
Query: 171 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVES-------- 220
R E +L G + V+GD+N + ID CD DF +N R W L
Sbjct: 166 RAEAVLKDGSHVIVLGDINTSHRPIDHCDPSEIDDFGENPGRKWLNGFLHRGKQEEESDE 225
Query: 221 --------------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
GG F D FR HP R A+TCW + TGA Q NYGTRID+I C
Sbjct: 226 EEHDKESEETDPLHGGKFVDTFRFFHPTRINAFTCWSTLTGARQTNYGTRIDYIFAD--C 283
Query: 267 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
L FV DI+ + +EGSDH PV+ L
Sbjct: 284 -----QLAKEQFVG-----ADIMPE-------------------VEGSDHCPVWGQL-SC 313
Query: 327 PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTED 386
I P +RYLP G QQ L L+K V ++ + +LP E+
Sbjct: 314 SLISSPKPPPFCTRYLPEFAGKQQKLSRFLVK--VDQKSAQSEQKNALPGSQEEEERREN 371
Query: 387 CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE-NCRDSAN-VASHSTITQGSS 444
+ + +++ S +S + +G+ TKT+ + + N +A + T +
Sbjct: 372 LNPSGAANISGKKRS-------LTSDSVAPKGKKTKTVNASSKPQGNLLAFFKSKTTNIN 424
Query: 445 NHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLS 504
+P ++D A K ++ S+TDT ++D
Sbjct: 425 QCENPLNLDEAAKPPITEEVF--------------------SVTDTKSEGPELISDNLSQ 464
Query: 505 QEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWR 564
Q ++ H N T +S + D KKG + + W+
Sbjct: 465 QCSTAKTDQHLN----TKHSPPQPTV---------RQSDAKKG----------TSSVFWK 501
Query: 565 RIQQLMETSIPLC-KGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ L P C K H EPCV R VKK GP G++FFVCAR +G ASNPEA C +F W
Sbjct: 502 SV--LHGPPAPPCCKVHGEPCVLRTVKKEGPNMGKQFFVCARPQGHASNPEARCNFFAWV 559
>gi|291239611|ref|XP_002739716.1| PREDICTED: apurinic/apyrimidinic endonuclease 2-like [Saccoglossus
kowalevskii]
Length = 541
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 213/674 (31%), Positives = 308/674 (45%), Gaps = 181/674 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T+N+NG+R + L+ LLDS +ADIIC QETK+ R +L + +GY S+FS
Sbjct: 1 MRILTWNINGIR---AAKKPLKSLLDSLEADIICLQETKVTRDQLDEANAVVEGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG----LE 116
+ KGR GYSGVATFC + F+ P+AAEEG +G+L +S + G
Sbjct: 58 FS----KGRQGYSGVATFCH--NDFT------PLAAEEGLSGILSSSAGNEVVGNYGNQT 105
Query: 117 DFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFFHV 167
DF+ +EL +D+EGR +++ H ++ NVY PR + +D R+ FKL+F+ +
Sbjct: 106 DFTDEELRSLDNEGRALLSLHKIKSSAGKNEDVVIINVYCPRCEPDDQERLNFKLRFYSL 165
Query: 168 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV--------- 218
LQ R E LL GR + VVGD+N++ AID CDA + K R W L
Sbjct: 166 LQTRCEALLSAGRHVIVVGDMNVSHKAIDHCDAAVNPTKP--RQWMDQFLCKLSDMGEII 223
Query: 219 ------------------------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
+S GSF D FR HP+++EA+TCW + TGA Q NYG
Sbjct: 224 DKTSEVNHLIGAVGISPEKVSNYSQSTGSFVDTFRHFHPQQQEAFTCWRTTTGARQLNYG 283
Query: 255 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314
TRID+IL + ++ V D +I +EGS
Sbjct: 284 TRIDYILAS---------------MSLQVELLDSII-----------------MPNVEGS 311
Query: 315 DHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSL 374
DH PV + L E + P+L+++++P G KQ K F
Sbjct: 312 DHCPVKVTLRCTCETSK-KIPTLSTKHMPEFAG---------------KQQKLSGFFTKA 355
Query: 375 PAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 434
ES+ T + DS I S + T ENC SA+
Sbjct: 356 AIESSHINTTPEI------------DSKI------------SHPKLTNHYENC--SASNL 389
Query: 435 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQL--SLKSFFHKRSNVSHDDNNSITDTSL 492
T + SN A KK K + ++ ++ FF K+S D+ SI
Sbjct: 390 LKRTSSANESN---------ATKKQKTTNRPKMHGNISDFFQKKSVSKTSDHPSIQ---- 436
Query: 493 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 552
S+++V IP+ + + SV G ++S H + G +
Sbjct: 437 -----------SKDQV---------IPL-ECAISVAPRAGEDAS---HSIPMQSG---MK 469
Query: 553 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 612
E+ VA +W+ + + PLC+GHKEPCV R V+K G GR+F+VC + EGP SN
Sbjct: 470 DEKKKVAA-KWKNMLSGPKPP-PLCRGHKEPCVLRTVRKTGLNQGRQFYVCTKPEGPKSN 527
Query: 613 PEANCGYFKWAFSK 626
P A C +F+WA K
Sbjct: 528 PNARCDFFQWADKK 541
>gi|402910299|ref|XP_003917823.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Papio
anubis]
Length = 518
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 182/653 (27%), Positives = 278/653 (42%), Gaps = 169/653 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ V ++ ++L+ DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPVQGVANQEPSNCAAVAVGRILEELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVSLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN 390
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE------------------------------ 347
Query: 391 VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPF 450
S +L+ +NQ ++ C++ A V
Sbjct: 348 ---------QSPLLEQSALQHNNQ-------TRVQTCQNKAQV----------------- 374
Query: 451 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 510
H R R S GQ +LKS+F N + + + ++L + PE
Sbjct: 375 HSTRPRPSQAGSGRGQKNLKSYFQPSPNCPQ------ASPDIELPSPPLMSALMTPKTPE 428
Query: 511 SHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLM 570
+ + + S +DEK+ + W+ +
Sbjct: 429 EEAVAKVV--------------KGRAKASEAKDEKEVRTSF-----------WKSVLA-G 462
Query: 571 ETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 463 PLRTPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|224134090|ref|XP_002327753.1| predicted protein [Populus trichocarpa]
gi|222836838|gb|EEE75231.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 183/521 (35%), Positives = 232/521 (44%), Gaps = 179/521 (34%)
Query: 83 SPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFIL 142
S FSS+EVALPVAAEEGFT ++ SK +GL++F+KD L+K
Sbjct: 22 SAFSSSEVALPVAAEEGFTRFVD--WSKRRKGLQEFAKDGLVKF---------------- 63
Query: 143 FNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP 202
YGP+A SE
Sbjct: 64 --AYGPQAASE------------------------------------------------- 72
Query: 203 DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 262
D + EF++ FF + + + + CW +TGAEQFN+G+RIDHILC
Sbjct: 73 DMERIEFKM-----------KFFKILQ------KRSMQCWSLSTGAEQFNFGSRIDHILC 115
Query: 263 AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMC 322
AGPCLHQ+HDLQ +N ++CHV ECDIL +YKRWK G+ RWKGG RLEGSDHAPVY
Sbjct: 116 AGPCLHQEHDLQGNNSLSCHVKECDILTEYKRWKLGDTSRWKGGWGIRLEGSDHAPVYTS 175
Query: 323 LGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTG 382
L E+ +IP HST L+SRYL + C PA S
Sbjct: 176 LEEIHDIPTHSTLPLSSRYL-------------------SANDSWC------PANSWLLH 210
Query: 383 DTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG 442
D V + +L G + NQ D N + I Q
Sbjct: 211 DFNPAGYQVHLQMEM-----LLYGREFTDENQ--------------DRPNT---TVILQS 248
Query: 443 SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS 502
+ P + +KKA+KS QLSL+SFF + N+S NS T TS
Sbjct: 249 QHTKLVP--AEGTQKKARKSWCFQLSLRSFFQRSPNLSTVAENSSTKTS----------- 295
Query: 503 LSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE 562
++ P S +HS+ SH D+K K
Sbjct: 296 -PRQAEPNSRNHSSD---------------------SHAMDDKSSSPNYCK--------- 324
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 603
+IQQLM+ SIP+CKGHKEPCVAR+VKKPGPT GRRFF C
Sbjct: 325 --KIQQLMQNSIPVCKGHKEPCVARIVKKPGPTLGRRFFAC 363
>gi|390359970|ref|XP_784420.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Strongylocentrotus purpuratus]
Length = 621
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 209/696 (30%), Positives = 305/696 (43%), Gaps = 176/696 (25%)
Query: 1 MKIVTYNVNGLRQ-RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
MK++T+N+NGLR +V L++L + DADIIC QETK+ R +L +DLV D Y ++F
Sbjct: 26 MKVLTWNINGLRACKVP----LKELFANLDADIICLQETKITRDQLDNDLVNVDDYNAYF 81
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL---- 115
S + K R+GYSGVAT+C+ PV AEEG TGLL + + G
Sbjct: 82 SFS----KKRSGYSGVATYCK--------NSTTPVIAEEGLTGLLSHGTKQSLIGCYGDQ 129
Query: 116 EDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+S +ELL ID+EGR +IT H G ++ NVY PRA ++ R FK++F++
Sbjct: 130 SAYSPEELLSIDAEGRTIITQHQYRKKDGALGDLVIINVYCPRAGDDNPERKSFKMRFYN 189
Query: 167 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNE---FRIWFRSML------ 217
+LQ R E +L G+ + +VGD+N + ID CD ++ K E R W L
Sbjct: 190 LLQLRAEAMLQAGKSVVIVGDVNASHRRIDHCDPSGNWGKFESHPSRKWLDGFLKDCSCP 249
Query: 218 --VESGGS---------------------------------------FFDVFRSKHPERR 236
E+ S F D FR HP+R
Sbjct: 250 ETAETSPSSQDDLQKSPQEEQELSDEERHVHDDSNIDVEDIPSKDNLFVDSFRYFHPKRE 309
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
A+TCW + TGA Q NYGTRID+I+ + + ECDI+ ++
Sbjct: 310 NAFTCWSTLTGARQTNYGTRIDYIIV------------NERLCVDELTECDIMPEF---- 353
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL--GEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 354
EGSDH PV L G P H + ++ +P + G QQ L +
Sbjct: 354 ---------------EGSDHCPVKATLLGGCSPAEQLH---PMCAKLMPEVAGKQQKLSN 395
Query: 355 VLMKREVAKQGKSCKFSGSLPAESNSTGDTE-DCSENVDRSLNNYCDSGILQGVYCSSSN 413
K V+ K ++ E+ G + D + +SL V
Sbjct: 396 FFQK--VSPSKKFEMHEKAMSGENKQGGRSRLDIGKREGQSL-----------VGKPGKR 442
Query: 414 QESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF 473
+++G+ TKT N+AS +KKA Q L+
Sbjct: 443 AKTDGKVTKT-------GNIASF------------------FKKKADAKLRSQTDLE--I 475
Query: 474 HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGV 533
H+ S+ S+ N + S + + + S Q + + IPV + G
Sbjct: 476 HQSSSSSY--NTRLMPNSQRSDGDIDNGSDFQNRLKD-------IPVDS------GISGS 520
Query: 534 NSSVCSHDQ--DEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVK 590
+ +V Q E + F DK + L W+ + + S P+CKGH+EPC+ R VK
Sbjct: 521 DDAVSDASQIVKETSQELFEDKPKAKQQLASAWKNLFKGPPPS-PMCKGHQEPCLLRTVK 579
Query: 591 KPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 626
K GP G++FFVC R EG +NPEA C +F+W K
Sbjct: 580 KAGPNLGKQFFVCKRPEGHKNNPEARCNHFEWVSKK 615
>gi|195996619|ref|XP_002108178.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
gi|190588954|gb|EDV28976.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
Length = 527
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 186/644 (28%), Positives = 289/644 (44%), Gaps = 139/644 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+ +NVNG+R GS++ LL+ +ADI+CFQETKL R +L + +GY S+FS
Sbjct: 1 MKILCWNVNGIRTTAYGKGSIKDLLEFLNADILCFQETKLLRDQLDESIAFVEGYNSYFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM---EGLED 117
+R G+ YSGVAT+C+ T+ A P+ EEG + + + + +
Sbjct: 61 FSR----GKVAYSGVATYCK-------TDCA-PIRVEEGLSNVWAAKNADRIGHYGNISK 108
Query: 118 FSKDELLKIDSEGRCVITDHG-----HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 172
F+ +EL +D+EGR ++T+H + ++ NVY PRAD E R+ FKL+F+ +LQ+R
Sbjct: 109 FNSEELSLLDAEGRAILTEHKTDFGRNVVVINVYCPRADPEKPERLNFKLKFYELLQERA 168
Query: 173 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI-WFRSML------------VE 219
E LL G+ + +VGD+N + ID C+ +N W ++L +
Sbjct: 169 EALLIAGKHVVIVGDVNTSHKPIDHCEPDIKAMQNSPSCHWLDNLLIPLDSEGKVDSSIS 228
Query: 220 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279
+G F D FR +P R+EA+TCW + T A + NYGTRID+I+
Sbjct: 229 AGKKFIDSFRYFYPRRKEAFTCWSTVTSARKTNYGTRIDYIIA----------------- 271
Query: 280 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 339
+ D+++ Y + + +EGSDH P+Y L P P L +
Sbjct: 272 -----DKDLVVSYFA---------ESQIQPEIEGSDHCPIYADLKFTIN-PSDKLPWLCT 316
Query: 340 RYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYC 399
+Y+ Q L L K GK
Sbjct: 317 KYMSEFSKKQSKLTEFL------KLGK--------------------------------- 337
Query: 400 DSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKA 459
S + SE T I +D+ NV + + + P ++D R K+
Sbjct: 338 -----------ESTERSEPTNTTRINKMKDT-NVTVDTKGSNQKRDSTCPVNIDVKRSKS 385
Query: 460 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP 519
++ L L FF K SN +H N SI ++ ++E E+
Sbjct: 386 SSNKSCNL-LNYFFTKPSN-THKSNTSIIQPTV------------EKEPLEA-------- 423
Query: 520 VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKG 579
+ D + ++ +N+S ++ +++K+ + + + W+ I IPLC G
Sbjct: 424 IKDKKDNNNDSRELNNSQQNNKENKKEDEAAMVANDKSETTKAWKSILS-GPPPIPLCSG 482
Query: 580 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
HK P V R VKK GP GRRF+VC EG NP A C +F+WA
Sbjct: 483 HKVPSVMRTVKKSGPNQGRRFYVCTLPEGRRGNPNARCNFFQWA 526
>gi|241745915|ref|XP_002405543.1| ap endonuclease, putative [Ixodes scapularis]
gi|215505857|gb|EEC15351.1| ap endonuclease, putative [Ixodes scapularis]
Length = 507
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 202/641 (31%), Positives = 273/641 (42%), Gaps = 157/641 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR S ++ LL DADIICFQETK R L+ + +GY +FFS
Sbjct: 1 MKLVSWNINGLR---SFKAGVKGLLAELDADIICFQETKATRDVLEETSAIVEGYSAFFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL----E 116
R ++GYSGVATFC+ + P AAEEG T L +SG G
Sbjct: 58 FPRY----QSGYSGVATFCK--------DAFRPFAAEEGLTELWTSSGCPDSVGFYGDTS 105
Query: 117 DFSKDELLKIDSEGRCVITDH--------GHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
DF + +D EGR V+T H + NVY PRAD E R Q KL F+ +L
Sbjct: 106 DFDSKNISSVDGEGRTVLTLHHVRCGDKLKRIAVINVYCPRADPEKPERGQIKLDFYELL 165
Query: 169 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESGGS--F 224
++R LL G + ++GDLN + ID CD DF N RIW L S + F
Sbjct: 166 KRRAMTLLRNGLEVIILGDLNTSHRKIDHCDPSDDEDFDSNPGRIWLSQFLENSTTNTCF 225
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
D +R HP +A+TCW + GA Q NYGTRID++LC+ P L +
Sbjct: 226 HDTYRRLHPTTEKAFTCWNTRLGARQTNYGTRIDYVLCS-PAL------------VPFLQ 272
Query: 285 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV---YMCLGEVPEIPQHSTPSLASRY 341
DIL + GSDH PV + C G +P PS+A+++
Sbjct: 273 TADIL-------------------PHVLGSDHCPVEAIFRCDG----VPSPRCPSMATKF 309
Query: 342 LPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDS 401
P G QQ L + L K+ GD E+ DR
Sbjct: 310 WPEFAGRQQRLSAFLSKKP---------------------GDQEEAER--DR-------- 338
Query: 402 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 461
Q SEG ++C S + + + S N AR K
Sbjct: 339 ----------RPQSSEG----WEDSCAVSVELRNGGPPVKKSKNV-------PARTTDKS 377
Query: 462 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 521
+ Q +L FF V+++ TD +S++ SH + +
Sbjct: 378 HKTAQSTLNRFF--------------------VSSNKTDVGVSKQSSRSSHGQAK---LG 414
Query: 522 DYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHK 581
D V VNS E KR +D W+ + + P CKGH
Sbjct: 415 DCGLPV-----VNSGTNVSGAPEPAPKRAVD------VACAWKSLLKGPPVPPP-CKGHG 462
Query: 582 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
E CV R VKKPGP GR+FFVCAR G + + A+C +F+W
Sbjct: 463 EQCVLRTVKKPGPNLGRQFFVCARPTGKSGDVNASCEFFQW 503
>gi|156398432|ref|XP_001638192.1| predicted protein [Nematostella vectensis]
gi|156225311|gb|EDO46129.1| predicted protein [Nematostella vectensis]
Length = 506
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 204/381 (53%), Gaps = 67/381 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T+N+NGLR V++ L+ L+S +AD++CFQETK+ R L+ MADGY +FFS
Sbjct: 1 MKILTWNINGLRA-VTREKKLKDFLNSLEADVMCFQETKITRDMLEEATCMADGYTAFFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL-EDFS 119
+R ++GYSGVATFC+ + P+AAEEG T L S G E+F+
Sbjct: 60 FSRV----KSGYSGVATFCK--------DSTTPLAAEEGLTSQLSASPDIGFYGDDEEFT 107
Query: 120 KDELLKIDSEGRCVITDH-----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
D+L ++DSEGR ++T+H G ++ NVY PRAD E+ RIQFKL+F +L KR +
Sbjct: 108 SDQLSRLDSEGRTILTEHTLSSGGTVVIINVYCPRADMENEDRIQFKLEFHRLLSKRVKA 167
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE------------- 219
LL G+ + V+GD+N A ID C+ DF+ R W +LV
Sbjct: 168 LLNSGKHVIVLGDINAAHKPIDHCNPCKYEDFSSFPGRAWLDELLVSLPLPDNSCDSSWK 227
Query: 220 -SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 278
G D FR HP +REAYT W ++TGA Q NYGTRID+IL P L Q+ F
Sbjct: 228 CVSGLLIDSFRYFHPLQREAYTNWSTSTGARQTNYGTRIDYILVDPPLLQQE-------F 280
Query: 279 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 338
V C + +EGSDH PV +C + + + TP L
Sbjct: 281 VDCVIRP------------------------EVEGSDHCPV-VCTLKNRFLAANKTPLLC 315
Query: 339 SRYLPIIRGVQQTLVSVLMKR 359
++++P G QQ LVS K+
Sbjct: 316 TKFMPEFSGKQQKLVSFFTKK 336
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 542 QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 601
+D K + L ++ W+ I + PLC GH EP V R VKK GP +GR+F+
Sbjct: 425 EDTKSNQNMLLNPEPYSSVSAWKSILK-GPPPAPLCPGHNEPSVLRTVKKKGPNYGRQFY 483
Query: 602 VCARAEGPASNPEANCGYFKW 622
CAR EG ASN EA C +FKW
Sbjct: 484 CCARPEGHASNKEARCNFFKW 504
>gi|41055919|ref|NP_956440.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Danio rerio]
gi|28278715|gb|AAH44527.1| Zgc:55889 [Danio rerio]
gi|182890762|gb|AAI65311.1| Zgc:55889 protein [Danio rerio]
Length = 558
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 157/418 (37%), Positives = 207/418 (49%), Gaps = 90/418 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NG+R + ++K+LDSFDADIIC QETK+ R L + DGY S+FS
Sbjct: 1 MKIVTWNINGIRTFKN---GIKKILDSFDADIICVQETKVTRDLLDEKTAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+C+ + A P AEEG TGLL G+ I +
Sbjct: 58 FSR----GRSGYSGVATYCK--------DAATPFLAEEGLTGLLSNQGAVIGCYGDQVEL 105
Query: 119 SKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
+ +ELL +D+EGR VIT H HFI + NVY PRAD + R +FKLQF+ +LQ
Sbjct: 106 TSEELLALDNEGRAVITQH-HFIGQDGLQKLTVINVYCPRADPDKPERKEFKLQFYRLLQ 164
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVE------ 219
R E +L G + ++GD+N + ID CD PD F N R W L E
Sbjct: 165 CRAEAILSSGSHVIILGDVNTSHRPIDHCD--PDDVDNFEDNPGRKWLDQFLFETAENSE 222
Query: 220 ----------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
SGG F D FR HP+R A+TCW + TGA Q NYGTRID+I
Sbjct: 223 NGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYGTRIDYI--- 279
Query: 264 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+H+ V DI+ + +EGSDH PV+ L
Sbjct: 280 ---------FSNHSLVKTFFIGVDIMPE-------------------VEGSDHCPVWAQL 311
Query: 324 G-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 380
+ P+ P + +R++P G QQ L L K KQ S SLP ++
Sbjct: 312 SCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLFKIP-EKQNISNSSEKSLPGSQDA 366
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 524 SCSVHELHGVNSSVCSHD-QDEKKGKRFLDKERNNVALLE-------------------- 562
SC G NS +C D Q++ + L+ E N +E
Sbjct: 435 SCQDGPGTGSNSKICPSDLQNDMNVSKLLEMETENQDEVEGESTSMDKPNDCKKGPCTGF 494
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
W+ + PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W
Sbjct: 495 WKAVLH-GPPQPPLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAW 553
Query: 623 A 623
Sbjct: 554 V 554
>gi|167555152|ref|NP_001107928.1| uncharacterized protein LOC797209 [Danio rerio]
gi|160773435|gb|AAI55114.1| LOC797209 protein [Danio rerio]
Length = 558
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/418 (37%), Positives = 205/418 (49%), Gaps = 90/418 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NG+R + ++K+LDSFDADIIC QETK+ R L + DGY S+FS
Sbjct: 1 MKIVTWNINGIRTFKN---GIKKILDSFDADIICVQETKVTRDLLDEKTAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+C+ + A P AEEG TGLL G I +
Sbjct: 58 FSR----GRSGYSGVATYCK--------DTATPFLAEEGLTGLLSNQGEVIGCYGDQVEL 105
Query: 119 SKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
+ +E L +D+EGR VI+ H HFI + NVY PRAD + R +FKLQF+ +LQ
Sbjct: 106 TSEEFLALDNEGRAVISQH-HFIGQDGPQKLTVINVYCPRADPDKPERKEFKLQFYRLLQ 164
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVE------ 219
R E +L G + ++GD+N + ID CD PD F N R W L E
Sbjct: 165 CRAEAILSSGSHVIILGDVNTSHRPIDHCD--PDDVDNFEDNPGRKWLDQFLFETAENSE 222
Query: 220 ----------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
SGG F D FR HP+R A TCW + TGA Q NYGTRID+I
Sbjct: 223 NGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNALTCWSTLTGARQTNYGTRIDYI--- 279
Query: 264 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+H+ V DI+ + +EGSDH PV+ L
Sbjct: 280 ---------FSNHSLVKTFFIGVDIMPE-------------------VEGSDHCPVWAQL 311
Query: 324 G-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 380
+ P+ P + +R++P G QQ L L+K KQ S SLP ++
Sbjct: 312 SCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLVKIP-EKQNISNGSEKSLPGSQDA 366
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 524 SCSVHELHGVNSSVCSHD-QDEKKGKRFLDKERNNVALLE-------------------- 562
SC G NS +C D Q++ + L+ E N +E
Sbjct: 435 SCQDGPGTGSNSKICPSDLQNDMNVSKLLEMETENQDEVEGESTSMDKPNDCKKGPCTGF 494
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
W+ + PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W
Sbjct: 495 WKSVLH-GPPQPPLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAW 553
Query: 623 A 623
Sbjct: 554 V 554
>gi|55741922|ref|NP_001006804.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
gi|49903339|gb|AAH76676.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
Length = 517
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 152/412 (36%), Positives = 210/412 (50%), Gaps = 77/412 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NG+R ++ G L++ LDS DADIIC QETK+ R L + +GY S+FS
Sbjct: 1 MKIVSWNINGIR--ATRVG-LKETLDSLDADIICLQETKVTRDLLDEPSAIVEGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLEDF 118
+R GR+GYSGVATFC+ SST P AAEEG +G+L T E+F
Sbjct: 58 FSR----GRSGYSGVATFCK-----SST---TPWAAEEGLSGMLCNHTGSIGCYGNTEEF 105
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
++EL +D EGR V+T H + NVY PRAD E R +KL+F+ +LQ
Sbjct: 106 LEEELQSLDQEGRAVLTQHRIRNCEGKEETLTVINVYCPRADPEKPERKTYKLRFYRLLQ 165
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE-------- 219
R E +L +G + ++GD+N + +D CD F +N R W L +
Sbjct: 166 TRAEAILQKGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFLGDPVPSQKGD 225
Query: 220 -------SGGS--FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
SGGS F+D FR HP +R A+TCW S +GA Q NYGTRID+IL
Sbjct: 226 SETGTPPSGGSGRFYDSFRYFHPTQRNAFTCWCSASGARQTNYGTRIDYIL-------GN 278
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+L F+ D +I +EGSDH PV + P I
Sbjct: 279 SELVEREFL-------DSII-----------------MPEVEGSDHCPVKAVMKCRP-IA 313
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTG 382
+ P L ++YLP G QQ L+ LMK+E + + S L ++S++ G
Sbjct: 314 ANKCPPLCTKYLPEFAGRQQKLLQFLMKKENTSGNATEESSELLGSQSSAEG 365
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 627
P CKGH EPCV R VKK GP GR+F+VCAR EG ++NP+A C +F W K+
Sbjct: 461 PNCKGHGEPCVLRTVKKAGPNCGRQFYVCARPEGHSTNPQARCNFFLWLTKKA 513
>gi|449662096|ref|XP_002160726.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Hydra
magnipapillata]
Length = 516
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 189/640 (29%), Positives = 271/640 (42%), Gaps = 144/640 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T+N+NG+R S+ SL LLDS +ADIIC QETK+ R L L +GY +FFS
Sbjct: 1 MKILTWNINGIRA-TSRNHSLGNLLDSLEADIICLQETKITRNLLTDHLANVEGYYAFFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM---EGLED 117
+ K +TGYSGVATFC+ + P+AAEEG TGL + +++ +
Sbjct: 60 FS----KRKTGYSGVATFCK--------KTLCPIAAEEGLTGLFTSKMEQVVGFYNNPPE 107
Query: 118 FSKDELLKIDSEGRCVITDH-----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW 172
+S + L +DSEGRC+IT+H + NVY PRAD E+ R +K+ F+ +LQ R
Sbjct: 108 YSDELLRSLDSEGRCMITEHVTSDGQRLCIINVYCPRADVEEKERFHYKMCFYRLLQMRI 167
Query: 173 EFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF------- 225
L+ + R I VVGDLN++ ID CD DF + R W S++ G F
Sbjct: 168 ISLMREKRNIIVVGDLNVSHKRIDSCDPCEDFEDSPARKWLDSIIDFKGSESFSEKNVNN 227
Query: 226 ---DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 282
D FR HP + AYTCW + T A + N+GTRID IL H T
Sbjct: 228 FLVDTFRIFHPNEQNAYTCWNTQTRARETNFGTRIDFILA------------DHQLCTVL 275
Query: 283 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 342
N C IL D ++GSDH PV + + + P + ++
Sbjct: 276 TN-CVILAD-------------------VQGSDHCPVVADFNILLK-ASNLIPKTCAAFM 314
Query: 343 PIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSG 402
P I G Q + S F S ES+ G + R LN+ +S
Sbjct: 315 PEIFGKQSDIKS---------------FFSSKRFESDREG--------IKRKLNDSTESR 351
Query: 403 ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKS 462
Y N + + K + +++ +HS S+H+ + + ++ S
Sbjct: 352 F----YKKKKNVDQDFSIIKYFK----ASDTENHS-----RSSHVEISNFQSSTEEISCS 398
Query: 463 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 522
+L L L N S + I D S +V + S + V K T+
Sbjct: 399 RLSNLELS------HNSSSSNFAYIIDNSNMNYYAVKEASSFESAVLYESSMKQKTENTN 452
Query: 523 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKE 582
L G S+ H EK R + K+ NN
Sbjct: 453 KEIWKKILKGPESTPLCHGHKEKAVLRTVKKQGNN------------------------- 487
Query: 583 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
FGR+F+ C++ G +SN A CG+F W
Sbjct: 488 -------------FGRQFYACSKPVGSSSNKNAGCGFFVW 514
>gi|302820700|ref|XP_002992016.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
gi|300140138|gb|EFJ06865.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
Length = 379
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 139/228 (60%), Gaps = 28/228 (12%)
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
LE F++ ELL +D+EGRC++TDHG+F+LFN+YGP D R F +LQ R E
Sbjct: 169 LEGFTRQELLDLDNEGRCIVTDHGYFVLFNIYGPNVGCGDVERQDF------MLQCRLES 222
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF---FDVFRSK 231
+L QGRRI +VGDLNI+P I+ CD GP+F N R WFRS+LV F F F K
Sbjct: 223 ILKQGRRIIIVGDLNISPYPINSCDPGPEFDTNPSRQWFRSLLVSEVVRFQTRFACFILK 282
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
EAYTCW +GAE+FNYG+RIDH+L AGPC H CDIL++
Sbjct: 283 -----EAYTCWSQASGAEEFNYGSRIDHVLIAGPC-------AGHYM-------CDILLE 323
Query: 292 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 339
+KR K PRW GG S +L+GSDHAPV + +P IP H P LA+
Sbjct: 324 FKRAKLDTLPRWSGGRSLKLDGSDHAPVILQFKHLPSIPPHEAPQLAA 371
>gi|358058458|dbj|GAA95421.1| hypothetical protein E5Q_02075 [Mixia osmundae IAM 14324]
Length = 1197
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 194/685 (28%), Positives = 289/685 (42%), Gaps = 118/685 (17%)
Query: 1 MKIVTYNVNGLRQRVSQF-------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMAD 53
M+++T+N+NG++ + Q+ G+ ++LD DI+C QETK+ + +++ + D
Sbjct: 1 MRLITWNINGIKT-LPQYKPWNECKGNYGQMLDLLGGDIVCLQETKITKDKIERSMACPD 59
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIME 113
Y++FFS K GYSG A + + +P+ AEEG TGL SG K +
Sbjct: 60 DYDAFFSSY--CRKPPKGYSGTAIYTK-------RAATVPLQAEEGLTGL-SLSGEKDRD 109
Query: 114 GLE--------------DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
L + S E+ IDSEGR + D G F+L NVY P + D R+
Sbjct: 110 DLARQDRIGGYPTPAAVELSSFEMRDIDSEGRTTVVDLGLFVLINVYCPNETNSD--RLT 167
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--------DFAKNEFRI 211
FK+ F H+L +R L+ GR + VVGDLNI ID CD DF + R
Sbjct: 168 FKMAFNHLLDERVRQLIKLGREVIVVGDLNICAQTIDHCDPEKRKAEQNLDDFQAHPARA 227
Query: 212 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--Q 269
W S + + G D R HP R YT W + A NYGTR+D+IL L +
Sbjct: 228 WL-SAFIGASGVMIDSTRFFHPTRTNMYTHWETKINARVTNYGTRLDYILVTPGLLPWIK 286
Query: 270 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 329
D+Q+H + H C + ID+ N G + E + P + VP+
Sbjct: 287 AADIQAHVVGSDH---CPVFIDFHPEISLN----DGTKQSLWEAVN--PGRERVDPVPDP 337
Query: 330 PQHSTPSLASRYLPIIRGVQQTLVSVLMKR--EVAKQGKSCKFSGSLPA-ESNSTGDTED 386
P+ +A+RY G Q L + +K+ E Q ++ LPA E T
Sbjct: 338 PR-----MAARYYNSFAGTQSLLKTFFVKKKDESPVQARTVT---PLPAPEMRRDASTSR 389
Query: 387 CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASH--------ST 438
SE+ ++ L + + + + E T IE+ D +A H ST
Sbjct: 390 VSES--------PEAPTLASAFATIRSSKPERHATIMIEDDDDDDEIAEHPQPRSRSTST 441
Query: 439 ITQGSSNHIS--PFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSL 492
T SS P +R + K QL GQ +L SFF S
Sbjct: 442 ATAQSSRPPDKRPRSDSASRSQPPKKQLNVRNGQSTLASFF-------------ADPVSG 488
Query: 493 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 552
+DT + VP S + P SCS +++ +R
Sbjct: 489 KTRRPESDTKKRRSTVPGSQSENLDEP----SCSASTSQRASATASETAAQADGYERLPL 544
Query: 553 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPAS- 611
++ + A +W + ++PLCK HKEPC V KPGP GR+F++C+R G
Sbjct: 545 QDSDPQAASQWNAL--FSPLAVPLCKMHKEPCTLWTVNKPGPNKGRKFYLCSRPVGQGHE 602
Query: 612 -----------NPEANCGYFKWAFS 625
NP+ C +F+W+ S
Sbjct: 603 EAASKNKNVILNPDYRCNHFEWSQS 627
>gi|395546227|ref|XP_003774991.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Sarcophilus
harrisii]
Length = 548
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 191/375 (50%), Gaps = 65/375 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++V++N+NG+R+ +LR+LLDS AD+ C QET++ R L+ L + +GY S+FS
Sbjct: 1 MRLVSWNINGIRRSPE---ALRRLLDSLGADVTCLQETRVTRDLLEEPLAIVEGYSSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVATFC+ A P AAEEG T LL + E+F
Sbjct: 58 FSR----GRSGYSGVATFCKNN--------ATPGAAEEGLTNLLTNHEGAVGAYGNTEEF 105
Query: 119 SKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
++DEL +DSEGR V+T H GH + NVY P AD + R+ +KL+F+ +LQ
Sbjct: 106 TEDELRALDSEGRAVLTQHQIRTSDGHEKTLTIINVYCPHADPDKPERLTYKLRFYRLLQ 165
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA---KNEFRIWFRSMLVESGGS--- 223
R E LL G + ++GD+N + +D CD PD A +N R W L G
Sbjct: 166 LRAEALLRTGSHVIILGDVNTSHQPLDHCDP-PDLACFEENPGRQWLTQFLWRPDGENGL 224
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
F D FR HP + A+TCW + TGA NYGTR+D+IL
Sbjct: 225 FVDSFRHFHPTKVGAFTCWSTATGARLTNYGTRLDYILG--------------------- 263
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 343
+ +L +++ + +EGSDH PV L IP P L +RYLP
Sbjct: 264 DRALVLGEFE----------DSFLMPEVEGSDHCPVGATL-RAELIPAPRCPPLCTRYLP 312
Query: 344 IIRGVQQTLVSVLMK 358
G QQ L L+K
Sbjct: 313 EFAGRQQKLSRFLVK 327
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 35/48 (72%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
PLCKGH EPCV R V+K GP FGR+F+VC+R G + NP A C +F W
Sbjct: 427 PLCKGHGEPCVLRTVRKAGPNFGRQFYVCSRPVGHSGNPVARCDFFLW 474
>gi|148227204|ref|NP_001086779.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
laevis]
gi|50415222|gb|AAH77433.1| Apex2-prov protein [Xenopus laevis]
Length = 517
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 197/390 (50%), Gaps = 77/390 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NG+R ++ G L++ LDS DADIIC QETK+ R L + +GY S+FS
Sbjct: 1 MKIVSWNINGIR--ATRVG-LKETLDSLDADIICLQETKVTRDLLDEPSAIVEGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLEDF 118
+R R+GYSGVATFC+ SST P AAEEG +G+ T E F
Sbjct: 58 FSRV----RSGYSGVATFCK-----SST---TPQAAEEGLSGVFCNRTGSVGCYGNTEQF 105
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
++EL +D EGR V+T H + NVY PRAD E R +KL+F+H+LQ
Sbjct: 106 LEEELQSLDQEGRAVLTQHRILNCEDKEETLTVINVYCPRADPEKPERKTYKLRFYHLLQ 165
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWF-------------- 213
R E +L G + ++GD+N + +D CD F +N R W
Sbjct: 166 TRAEAILQNGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFLGDPIPSQKGD 225
Query: 214 -RSMLVESGGS--FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+++ S GS F+D FR HP ++ A+TCW S +GA Q NYGTRID+IL
Sbjct: 226 SETVMPPSAGSGLFYDSFRYFHPTQKNAFTCWCSASGARQTNYGTRIDYIL-------GN 278
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+L F+ D +I +EGSDH PV + P I
Sbjct: 279 RELVESEFL-------DSVI-----------------MPEVEGSDHCPVKAFMKCQP-IA 313
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
+ P L ++YLP G QQ L+ L+K+E
Sbjct: 314 ANKCPPLCTKYLPEFAGRQQKLLQFLVKKE 343
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 627
P CKGH EPCV R VKK GP GR+F+VCAR EG +SNP+A C +F W K+
Sbjct: 461 PNCKGHSEPCVLRTVKKAGPNCGRQFYVCARPEGHSSNPQARCNFFLWLTKKA 513
>gi|354503214|ref|XP_003513676.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cricetulus griseus]
gi|344248357|gb|EGW04461.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus griseus]
Length = 517
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/386 (33%), Positives = 195/386 (50%), Gaps = 73/386 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+R+ G LR +L+ DADI+CFQETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRRLQSLGCQVPSNCSTDLRHILEELDADIVCFQETKVTRDALTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S+FS +R+ + GYSGVATFC+ + A PVAAEEG +GL +
Sbjct: 62 VEGYNSYFSFSRS----QRGYSGVATFCK--------DSATPVAAEEGLSGLFANLNGNV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+ +F++++L +DSEGR V+T H L NVY P AD R+ F
Sbjct: 110 GCYGNMTEFTQEQLRALDSEGRAVLTQHKIHTWEGKEKPLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML- 217
K+ F+ +LQ R E LL G + ++GDLN A ID CDAG F ++ R W +L
Sbjct: 170 KMHFYRLLQIRAEALLAAGCHVIILGDLNTAHRPIDHCDAGSLECFEEDPGRKWLDGLLS 229
Query: 218 ---VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
++G G F D +R +P++ A+TCW TGA FNYG R+D++L
Sbjct: 230 DLECQTGSHIGPFMDSYRYFYPKQEGAFTCWSVITGARHFNYGARLDYVL---------- 279
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
+ ++ID + + ++GSDH PV L + +P
Sbjct: 280 ------------GDRTLIIDTFQ---------AAFLLPEVKGSDHCPVGAVL-NMSCVPA 317
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLM 357
P+L +R+LP G Q ++ L+
Sbjct: 318 KQCPALCTRFLPEFSGTQLKILGFLV 343
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 553 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 612
+++ V L W+ + + PLC+GHKEPCV R+VKKPGP GR F++CAR +GP +
Sbjct: 445 EDKKVVQTLFWKSVLS-GPSPAPLCRGHKEPCVMRIVKKPGPNMGRHFYICARPQGPPDD 503
Query: 613 PEANCGYFKW 622
P ++C +F W
Sbjct: 504 PSSSCNFFLW 513
>gi|323508160|emb|CBQ68031.1| related to APN2-AP endonuclease, exonuclease III homolog
[Sporisorium reilianum SRZ2]
Length = 737
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 194/730 (26%), Positives = 289/730 (39%), Gaps = 161/730 (22%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I +N+NGLR Q + L+ ADI CFQETK+ R++L + + Y
Sbjct: 1 MRITVWNINGLRTLKGYQPWYKLPDWEACLEHLGADIACFQETKMTRKQLTEPMCILPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+FF+ GYSG T+ + V++P+ AE+G TG L
Sbjct: 61 NAFFNFHPAK-----GYSGTVTYVK-------KSVSIPLKAEQGITGRLPVTNVSTNPLI 108
Query: 105 --ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
E G + +D +D EGRCV+ D G F+LFNVY P + R+++K+
Sbjct: 109 PSEPIGCIPADTRDDVEPQIWNALDDEGRCVVLDLGLFVLFNVYCPNETGPE--RLEYKM 166
Query: 163 QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-------GPD-FAKNEFRIWFR 214
++ L +R L+ GR++ +VGD+NI ID CDA G D F ++ R WF+
Sbjct: 167 TYYQGLAERAHRLIQAGRQVMIVGDMNIIRDPIDHCDAEQSMKEYGWDHFHQHPARSWFQ 226
Query: 215 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHD 272
+ L G F DV R HPER++ +TCW + A NYG R+D+ L L + D
Sbjct: 227 TFLAPHG-KFHDVGRLYHPERKKMFTCWNTLIDARPANYGVRLDYTLVTEGLLDWIKGAD 285
Query: 273 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 332
+Q + + H C I +D + R G +L H G +P
Sbjct: 286 IQPDVYGSDH---CPIYVDL------HDERQIDGKMVKLADLMH-------GGADRLP-- 327
Query: 333 STPSLASRYLPIIRGVQQTLVSVL-MKREVAKQGKSCKFSG-SLPAESNSTGDTEDCSEN 390
P+LA+ + G Q+ L S ++ KSC +G SL + +T + + N
Sbjct: 328 --PALAACHYDEFSGKQRKLASFFGASKKAVPTTKSCSPAGTSLADQGKTTAEVKSTLSN 385
Query: 391 VDRSLNNYCDSGILQGVYCSSSNQESEGEFTK-------------TIENCRDSANVASHS 437
S + D G +Q S++ ESEG IE +N A +
Sbjct: 386 -GSSTKDGTDGGAIQ-TSTSTAGIESEGSSLADALFSLHSQQEGLNIEMAASQSNAAPAT 443
Query: 438 TITQGSSNHISPFHV-----------------------------------------DRAR 456
T + + + P D +
Sbjct: 444 TSSTPAVEPVPPASAPVATTAVSTPSPTKAPASQPSPSGRRDSALAKRAPAATKGKDSGK 503
Query: 457 KKAKKSQLGQLSLKSFFHKRS--------------NVSHDDNNSITDTSLNVNNSVTDTS 502
K S GQ SL+SFF K ++S + S VN+SV T
Sbjct: 504 AKNGASLKGQTSLQSFFAKPKSTSSTASSEPTKVMDLSQETGGSKAPPPAPVNDSVAGT- 562
Query: 503 LSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE 562
+ ++P + + D C HE ++ + ++ R A L
Sbjct: 563 VPNTDIPAASYDETD----DAICDFHE--ATTTTFPAPPAEQSAADRV-------GASLA 609
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----------SN 612
W I PLC+ H EPC A V KPGP GR+F++C R GP N
Sbjct: 610 WGAI--FSPIPAPLCRSHSEPCRAWTVNKPGPNHGRKFWLCNRPVGPGYEKSGRAKGDVN 667
Query: 613 PEANCGYFKW 622
PE C +F W
Sbjct: 668 PEFRCNFFLW 677
>gi|327261945|ref|XP_003215787.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Anolis
carolinensis]
Length = 530
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 188/379 (49%), Gaps = 64/379 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR L+ LLD+ AD+IC QETK+ R L+ L + +GY ++FS
Sbjct: 1 MRLLSWNVNGLRAGAGAA-GLKPLLDALGADVICLQETKITRDLLEEPLAVVEGYNAYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+RT R+GYSGVATFC+ A P AAEEG +GL I DF
Sbjct: 60 FSRT----RSGYSGVATFCKA--------TATPEAAEEGLSGLWTKHEGAIGCYGAPGDF 107
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
+ +EL +DSEGR VIT H + NVY PRAD E R +FKL+F+H+LQ
Sbjct: 108 TTEELQALDSEGRAVITRHRICTSEQQETTLTVVNVYCPRADPEKPERGEFKLRFYHLLQ 167
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESGGS---- 223
R E LL G + ++GD+N A ID CD G F ++ R W L E G
Sbjct: 168 ARAEALLRAGGHVVIMGDINTAHKPIDHCDPGDLESFQEHPGRNWLDGFLWEPGKESPHG 227
Query: 224 --FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 281
F D FR HP ++EAYTCW + TG+ NYGTRID+IL
Sbjct: 228 ELFVDTFRFLHPTQKEAYTCWCNVTGSRHLNYGTRIDYIL-------------------- 267
Query: 282 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRY 341
+ L + K + + + GSDH PV L V + P L +R+
Sbjct: 268 -ADRALALSELK----------EAQLRPEVFGSDHCPVQAVLKSVC-LGAPRCPPLCTRF 315
Query: 342 LPIIRGVQQTLVSVLMKRE 360
LP G QQ L L+K E
Sbjct: 316 LPEFAGTQQKLSRFLVKVE 334
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 35/49 (71%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLCK H EPCV R VKKPG GRRF+VCAR G +S+P A C +F WA
Sbjct: 477 PLCKAHGEPCVLRTVKKPGANCGRRFYVCARPLGKSSDPRARCDFFLWA 525
>gi|126342732|ref|XP_001367276.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Monodelphis domestica]
Length = 482
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 186/374 (49%), Gaps = 63/374 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++V++N+NG+R+ +LR LLDS AD+ C QET++ R L+ L + +GY S+FS
Sbjct: 1 MRLVSWNINGIRRSPE---ALRHLLDSLGADVTCLQETRVTRDLLEEPLAIVEGYSSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R R+GYSGVATFC+ A P AAEEG T LL T + E+F
Sbjct: 58 FSRC----RSGYSGVATFCKNN--------ATPGAAEEGLTSLLTTHQGAVGSYGNTEEF 105
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
++DEL +DSEGR V+T H + NVY P AD E R+ +KL+F+ +LQ
Sbjct: 106 TEDELRSLDSEGRAVLTQHQIRTSDGQEKTLTIMNVYCPHADPEKPERLTYKLRFYRLLQ 165
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVES---GGSF 224
R E LL G + ++GD+N + +D CD F +N R W L + G F
Sbjct: 166 LRAEALLQAGSHVIILGDVNTSHRPLDHCDPADLECFEENPGRQWLTEFLWQPDRDSGLF 225
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
D FR HP A+TCW + TGA NYGTR+D+IL +
Sbjct: 226 VDSFRHFHPTTVGAFTCWSTATGARLTNYGTRLDYILG---------------------D 264
Query: 285 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 344
+L +++ + +EGSDH P+ L IP P L +RYLP
Sbjct: 265 RALVLEEFE----------DSFLMPEVEGSDHCPIGATL-RTELIPAPRCPPLCTRYLPE 313
Query: 345 IRGVQQTLVSVLMK 358
G QQ L L+K
Sbjct: 314 FAGRQQKLSRFLIK 327
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 627
PLCKGH EPCV R V+K GP FGR+F+VC+R G SNP A C +F W K+
Sbjct: 426 PLCKGHGEPCVLRTVRKAGPNFGRQFYVCSRPVGHISNPAARCDFFLWVSGKT 478
>gi|348551967|ref|XP_003461800.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Cavia
porcellus]
Length = 514
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 194/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLR--------QRVSQFG--SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R Q + F ++++ L+ ADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGAVCQESNNFANVTMKRTLEELAADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FSC+R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 VVEGYNSYFSCSR----NRSGYSGVATFCK--------DSATPVAAEEGLSGLLATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY PR D E R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERTLTLINVYCPRVDPEKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 217
FK++F +LQ R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 FKMRFCRLLQNRAEALLAAGSHVIILGDLNTAHRRIDHCDAINLKYFEEDPARKWMDGLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G+F D +R P++ A+TCW +GA NYG+R+D++L G +
Sbjct: 230 NNIGCQSRSPVGTFIDTYRYFQPQQEGAFTCWSVVSGARHHNYGSRLDYVL--GDRTLVR 287
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
LQS +F+ V GSDH PV L V +P
Sbjct: 288 DTLQS-SFLLPEVM----------------------------GSDHCPVGAVLN-VSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+ P G Q +V L+ E
Sbjct: 318 AKHPPPLCTRFFPEFAGTQLKIVHFLVPLE 347
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 41/50 (82%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+PLC+GH+EPC+ R VKKPGP GRRF++CAR +GP S+P + C +F+W+
Sbjct: 462 MPLCRGHREPCIMRTVKKPGPNLGRRFYMCARPQGPPSDPSSRCNFFQWS 511
>gi|443713485|gb|ELU06313.1| hypothetical protein CAPTEDRAFT_176829 [Capitella teleta]
Length = 486
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 192/386 (49%), Gaps = 68/386 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T+N+NG+R + L +L ++ DADIIC QETK+ R L + +G+ ++FS
Sbjct: 1 MKILTWNINGIR---ASKVPLPQLFETLDADIICIQETKITRDMLDEATAIVEGFNAYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED--- 117
+T R+GYSGVAT+ + P AEEG TG+ E ++ G
Sbjct: 58 FCKT----RSGYSGVATYVK--------NSCTPTKAEEGLTGVHEADKAEHSIGFHGDYS 105
Query: 118 -FSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRA--DSEDTV-RIQFKLQF 164
+++DE+ +D+EGRC++T H + NVY P A D D+V R+ FKL+F
Sbjct: 106 LYTEDEIRSLDNEGRCIMTQHKMLSDDGEEIRLTVINVYCPMAVLDDPDSVERMAFKLKF 165
Query: 165 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML---VE 219
+ +LQKR E +L G + ++GD+N + ID CD +F ++ R W ++L
Sbjct: 166 YDLLQKRAEAILQSGSHVIILGDVNASHRPIDHCDPCDEKEFNQHPSRKWLNNLLRTPTN 225
Query: 220 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279
S G F D FR HP++REAYTCW + TGA NYGTRID+I + V
Sbjct: 226 SNGLFVDSFRHFHPDQREAYTCWQTLTGARATNYGTRIDYI------------IGDTRLV 273
Query: 280 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 339
++C IL D + GSDH PV L IP P L S
Sbjct: 274 EDSFSDCVILPD-------------------VRGSDHCPVKAVL-HWECIPAKKYPPLCS 313
Query: 340 RYLPIIRGVQQTLVSVLMKREVAKQG 365
+YLP G QQ L S K K G
Sbjct: 314 KYLPEFVGKQQKLSSYFSKGSGPKSG 339
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 33/54 (61%)
Query: 573 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 626
+ PLC GHKE C+ R VKK GR F+VC R EG SN EA C +F+W K
Sbjct: 433 TAPLCSGHKEACLLRTVKKDSLNKGRDFWVCNRPEGHKSNKEARCEHFEWVSKK 486
>gi|311276364|ref|XP_003135157.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Sus
scrofa]
Length = 515
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 195/390 (50%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATLNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H + NVY P AD R+
Sbjct: 110 VNCYGNMDEFTQEELRALDSEGRALLTQHKIRTQDGDEKSLTVINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+H+LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 218 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
++G G F D +R P+++ A+TCW + TGA NYG+RID++L +
Sbjct: 230 SNLRCQAGSHMGPFIDSYRYFQPKQKGAFTCWSTVTGARHLNYGSRIDYVLGDRALV--- 286
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
D +FV V GSDH PV L P +P
Sbjct: 287 MDTFQSSFVLPEV----------------------------MGSDHCPVGAVLNVSP-VP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L++ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVRLE 347
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 553 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 612
K++ V L W+ + + PLC GH+EPCV R VKKPGP GR F++CAR +GP ++
Sbjct: 443 KDKKEVRSLFWKSLLR-GPLPTPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTD 501
Query: 613 PEANCGYFKWA 623
P + C +F W+
Sbjct: 502 PSSRCNFFLWS 512
>gi|386780804|ref|NP_001248294.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|380790123|gb|AFE66937.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|383413815|gb|AFH30121.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|384943488|gb|AFI35349.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
Length = 518
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/390 (33%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ V ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPVQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID R + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFR---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|410211214|gb|JAA02826.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410247596|gb|JAA11765.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410289688|gb|JAA23444.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410336533|gb|JAA37213.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
Length = 518
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG TGL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLTGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|355757398|gb|EHH60923.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca fascicularis]
Length = 518
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ V ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPVQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|397471227|ref|XP_003807199.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pan
paniscus]
Length = 518
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 191/390 (48%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG TGL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLTGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK+ F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMHFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|355704840|gb|EHH30765.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
Length = 518
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ V ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPVQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|426256950|ref|XP_004022099.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1
[Ovis aries]
Length = 514
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/387 (33%), Positives = 193/387 (49%), Gaps = 74/387 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVKYEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ L+DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNLDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIIMGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 218 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
ESG G F D +R HP+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFHPKQKRAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLM 357
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|5410346|gb|AAD43041.1|AF119046_1 APE2 protein [Homo sapiens]
Length = 518
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|302843683|ref|XP_002953383.1| hypothetical protein VOLCADRAFT_118317 [Volvox carteri f.
nagariensis]
gi|300261480|gb|EFJ45693.1| hypothetical protein VOLCADRAFT_118317 [Volvox carteri f.
nagariensis]
Length = 705
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 148/224 (66%), Gaps = 18/224 (8%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF-DADIICFQETKLRRQELKSDLVMADGYESFF 59
++++T+N+NGLR+ V+ FG L++LL++ AD++CFQETKL R +L+ +L +ADG+ESFF
Sbjct: 3 LRVLTWNINGLRRVVAVFGGLQRLLEALAPADVVCFQETKLTRVDLQRELALADGWESFF 62
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF- 118
+ TR G+ GYSGVATFCR + ALP+ AEEGFTG+L + + +
Sbjct: 63 AFTR----GKVGYSGVATFCR-------RDRALPLHAEEGFTGVLHLTSEGLHPRWQAAG 111
Query: 119 -SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFFHVLQKRWEFL 175
S ++L +D EGR VITDHG F+L NVYGP SE+ R+ +KLQF+ LQ R +
Sbjct: 112 CSPEQLRNLDGEGRVVITDHGGFVLVNVYGPAITSEERAEERMSYKLQFYRALQLRLDGF 171
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGP-DF-AKNEFRIWFRSML 217
L +GRR+ +VGDLNIAP +D C A P DF A R W R +L
Sbjct: 172 LAEGRRVLLVGDLNIAPDYMDVCGATPRDFNACRADRAWLRGLL 215
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 559 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCG 618
A L WR+IQ M+ P C GHKEPC R VKK G GR+F+ CAR +G P C
Sbjct: 616 AALAWRQIQDQMKP--PRCSGHKEPCAVRTVKKRGDNNGRQFWCCARPDG--LPPNGRCD 671
Query: 619 YFKWA 623
+F+WA
Sbjct: 672 FFQWA 676
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
F D FR+ HP+R+ AYTCW +++GA NYG+RIDH+L A
Sbjct: 301 FVDAFRAFHPKRQHAYTCWNTSSGARVNNYGSRIDHVLVA 340
>gi|432099379|gb|ELK28619.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Myotis davidii]
Length = 512
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 197/394 (50%), Gaps = 74/394 (18%)
Query: 1 MKIVTYNVNGLRQRVSQ-------FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMAD 53
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L + +
Sbjct: 2 LRVVSWNINGIRSPLQAEEPNSCTTTAMARVLDKLDADILCLQETKVTRDALTEPLAIIE 61
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-- 111
GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL +
Sbjct: 62 GYNSYFSFSRN----RSGYSGVATFCK--------DGATPVAAEEGLSGLLALQNGDVGC 109
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKL 162
+++FS++EL +D+EGR ++T H + NVY P AD R+ FK+
Sbjct: 110 YGNMDEFSQEELRALDNEGRALLTQHKIRTWDGKEKILTIINVYCPHADPGRPERLTFKM 169
Query: 163 QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE- 219
+F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L +
Sbjct: 170 RFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSKL 229
Query: 220 --SGGS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 273
GGS F D +R HP++ A+TCW + TGA + NYG+RID++ L
Sbjct: 230 DCQGGSHVGAFIDTYRCFHPKQERAFTCWSTITGARRLNYGSRIDYV------------L 277
Query: 274 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHS 333
VT + +L + + GSDH PV L V +P
Sbjct: 278 GDRTLVTDTFQDSFLLPE-------------------VMGSDHCPVGAVL-NVSSVPAKQ 317
Query: 334 TPSLASRYLPIIRGVQQTLVSVLM---KREVAKQ 364
P L +R+LP G Q ++ L+ + V+KQ
Sbjct: 318 CPPLCTRFLPEFSGTQLKILHFLVHPKQEPVSKQ 351
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+P+C GH EPCV R VKK GP GR F++C+R GP+++P + C +F W+
Sbjct: 460 MPVCGGHGEPCVMRTVKKAGPNQGRHFYMCSRPRGPSTDPSSRCNFFLWS 509
>gi|18375507|ref|NP_055296.2| DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1 [Homo
sapiens]
gi|73921676|sp|Q9UBZ4.1|APEX2_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease XTH2; AltName: Full=APEX nuclease
2; AltName: Full=APEX nuclease-like 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|4996359|dbj|BAA78422.1| APEX nuclease-like 2 protein [Homo sapiens]
gi|5102658|emb|CAB45242.1| AP endonuclease XTH2, putative [Homo sapiens]
gi|10336529|dbj|BAB13764.1| apurinic/apyrimidinic endonuclease 2 [Homo sapiens]
gi|12804203|gb|AAH02959.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|57864642|gb|AAW56941.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|119613615|gb|EAW93209.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_b
[Homo sapiens]
gi|123993987|gb|ABM84595.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|123997761|gb|ABM86482.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|208965822|dbj|BAG72925.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|311347418|gb|ADP90654.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347420|gb|ADP90655.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347422|gb|ADP90656.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347424|gb|ADP90657.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347426|gb|ADP90658.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347428|gb|ADP90659.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347430|gb|ADP90660.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347432|gb|ADP90661.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347434|gb|ADP90662.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347436|gb|ADP90663.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347438|gb|ADP90664.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347440|gb|ADP90665.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347442|gb|ADP90666.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347444|gb|ADP90667.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347446|gb|ADP90668.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347448|gb|ADP90669.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347450|gb|ADP90670.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347454|gb|ADP90672.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347456|gb|ADP90673.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347458|gb|ADP90674.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347460|gb|ADP90675.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347462|gb|ADP90676.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347464|gb|ADP90677.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347466|gb|ADP90678.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347468|gb|ADP90679.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347470|gb|ADP90680.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347472|gb|ADP90681.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347474|gb|ADP90682.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347476|gb|ADP90683.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347478|gb|ADP90684.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347480|gb|ADP90685.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347482|gb|ADP90686.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347484|gb|ADP90687.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347488|gb|ADP90689.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347490|gb|ADP90690.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347492|gb|ADP90691.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347494|gb|ADP90692.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347496|gb|ADP90693.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|311347452|gb|ADP90671.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|391340727|ref|XP_003744688.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Metaseiulus occidentalis]
Length = 453
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 182/379 (48%), Gaps = 69/379 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NGLR + G LR LDSF+ADIIC QETK R L+ DL GY S+F+
Sbjct: 1 MKIVTWNINGLR---TFKGVLRSTLDSFNADIICVQETKTNRSTLEEDLACVPGYNSYFA 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED--- 117
R TGYSGVAT+C ++ P AA E E+ G M+ L D
Sbjct: 58 FPRL----LTGYSGVATYC--------SDNVRPFAANESLLAC-ESDGINEMDELTDVPD 104
Query: 118 -------FSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFK 161
S+ E+L +DSEGR ++T ++FN+Y PR D + R QFK
Sbjct: 105 PLEENAFLSQKEILNVDSEGRTLVTSFNFLDGAGQTKQLLVFNLYCPRNDPDRPERAQFK 164
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESG 221
F +L+ + L+ +G + + GD+NI+ ID CD G DF ++ RIW ML +
Sbjct: 165 YNFNAMLEHQAVCLVKKGFHVILTGDMNISHKRIDNCDPGEDFEESPARIWLTKMLDQQN 224
Query: 222 GSFF-DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 280
+F DVFR HP+ +E YTCW S A N+GTRID+I+C L
Sbjct: 225 DVYFVDVFRHMHPDAKEQYTCWNSQKSARLTNFGTRIDYIICDSKLLE------------ 272
Query: 281 CHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR 340
+ CDI D + GSDH PV L ++ I +R
Sbjct: 273 -YFESCDIHPD-------------------VMGSDHCPVSAVL-KLNLISNEKLIRKCTR 311
Query: 341 YLPIIRGVQQTLVSVLMKR 359
P G Q +L S L+K+
Sbjct: 312 NWPEFSGKQTSLSSFLVKK 330
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
PLC GH E V R+VKK G G+RF+ CAR EG + N EA C +F W
Sbjct: 405 PLCSGHGELSVLRIVKKDGINKGKRFYCCARPEGRSDNKEARCSFFVW 452
>gi|296235588|ref|XP_002762961.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Callithrix
jacchus]
Length = 518
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 194/395 (49%), Gaps = 77/395 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGMANQEPNNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID D+ F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDSVNLECFEEDPGRKWMDGLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+RID++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRIDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG 365
PSL +R+LP G Q ++ L+ KQG
Sbjct: 318 AKQCPSLCTRFLPEFAGTQLKILRFLVP---LKQG 349
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
IPLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 466 IPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPNDPSSRCNFFLWS 515
>gi|379047284|gb|AEI30104.2| apurinic/apyrimidinic endonuclease, partial [Camelus dromedarius]
Length = 488
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 189/387 (48%), Gaps = 74/387 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ +LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSPLQGVGYEEPSNCTATAVGHILDKLDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAANLECFEEDPGRKWMDGLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G GSF D +R P+++ A+TC + +GA NYG+R+D++L
Sbjct: 230 SNLGCQAGSYTGSFIDSYRCFQPKQKGAFTCRSTVSGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ + L+ + GSDH PV L V +P
Sbjct: 281 ----GDRTLVIXTFQASFLLP------------------EVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLM 357
P L +R+LP G Q T++ L+
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLTILRFLV 344
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRF 600
+ +PLC+GH+EPCV R VKKPGP GR F
Sbjct: 460 SPMPLCEGHREPCVMRTVKKPGPNLGRHF 488
>gi|311347486|gb|ADP90688.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARYLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|426396092|ref|XP_004064289.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1
[Gorilla gorilla gorilla]
Length = 518
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SSLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|297710110|ref|XP_002831748.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pongo
abelii]
Length = 518
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 191/390 (48%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F + R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAITGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|403306456|ref|XP_003943750.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Saimiri
boliviensis boliviensis]
Length = 518
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 192/390 (49%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPNNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID D+ F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDSVNLECFEEDPGRKWMDSLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + TGA NYG+RID++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRIDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 466 VPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPNDPSSRCNFFLWS 515
>gi|194228591|ref|XP_001494126.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Equus
caballus]
Length = 512
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 191/389 (49%), Gaps = 73/389 (18%)
Query: 1 MKIVTYNVNGLRQRVSQF---------GSLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRPLQGVCEEPSNCTAMAMGRVLDKLDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T +
Sbjct: 62 IEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATHNGDV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRALDSEGRALLTQHKIRTSEGKEKTLTLINVYCPHADPGKPERLAF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLV 218
K++F+ +LQ R E LL G + ++GDLN A ID DA F + R W S+L
Sbjct: 170 KMRFYRLLQTRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMDSLLS 229
Query: 219 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
G G F D +R P++ A+TCW +GA NYG R+D++L
Sbjct: 230 NPGCQAESHVGPFIDSYRCFQPKQEGAFTCWSVVSGARPLNYGCRLDYVL---------- 279
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPA 317
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L++ E
Sbjct: 318 KQCPPLCTRFLPEFAGTQLKILRFLVRLE 346
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 458 SPMPLCGGHGEPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPASRCNFFLWS 509
>gi|121704746|ref|XP_001270636.1| ap endonuclease [Aspergillus clavatus NRRL 1]
gi|119398782|gb|EAW09210.1| ap endonuclease [Aspergillus clavatus NRRL 1]
Length = 620
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 175/670 (26%), Positives = 276/670 (41%), Gaps = 147/670 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 20 MFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLP----KAKKGYSGVAIYTR--- 72
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
P+ AEEG TGLL + G +E L + D ++ +D
Sbjct: 73 ----NATCCPIRAEEGLTGLLCPPNSSVSFRELPEDQQIGGYPTLEQLSELETDPVI-LD 127
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV GD
Sbjct: 128 SEGRCVILEFPAFVLLGIYSPA--NRDESRDSFRHNFIDLMDTRIRNLVAMGKRVFVTGD 185
Query: 188 LNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG-----------GSFFD 226
+NIA ID A +F R F +L + + FD
Sbjct: 186 INIARGEIDAAHATEAIRKGTATEDEFVSTPARRVFNQLLSDGKVLGARDEGREEPALFD 245
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+ RS HPERR YTCW A NYG+RID++LC+ L + ++ C
Sbjct: 246 ICRSFHPERRGMYTCWEQRINARPGNYGSRIDYVLCS---------LNTQDWF------C 290
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSL--------- 337
D + L GSDH PVY + + + L
Sbjct: 291 D-----------------SNIQEGLMGSDHCPVYAVFKDTVRLEEREVNMLDIVNPPGMF 333
Query: 338 ---------ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCS 388
++YL G L+ KR K S K S ++P ST
Sbjct: 334 KNGERQQEYTTKYLLPTSG---RLIPEFDKRRSIKDMFSRKPSTTMP---TSTPRVPTLE 387
Query: 389 ENVDRSLNNYCDSGILQGVYCSS-SNQESEGEFTKTIENCRDSANVASHSTITQGSSNHI 447
++ +G+ + ++ S+Q+ +G K + S I
Sbjct: 388 HSMSTQETQVSTAGLGSPIKTAAGSSQQIKGVVRKRSQK-----------------SEVI 430
Query: 448 SPFHVDRAR----KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS-VTDTS 502
+P V R++ +++ GQ SL+ FF +++ SI+ +V+N +T+ S
Sbjct: 431 APVSVKRSKSGTAQQSTPPTAGQTSLRGFFKPKNDAVGRTGRSISGNPESVSNGIITEQS 490
Query: 503 L-----SQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 557
+ S E + + + TD + + N + QD G +D
Sbjct: 491 VAFPIKSTEVATSTSSEAMQAVPTDTATQGDQPDLSNPIAPASSQD---GGFVIDP---I 544
Query: 558 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 616
V+ +W ++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N E
Sbjct: 545 VSKEDWSKL--FTKRPVPRCEGHQEPCISLTTKKPGINCGRAFWICPRPLGPSGNKEKGT 602
Query: 617 ---CGYFKWA 623
C F WA
Sbjct: 603 QWRCPTFIWA 612
>gi|431914762|gb|ELK15800.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Pteropus alecto]
Length = 515
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 189/387 (48%), Gaps = 74/387 (19%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSPLQGVVYEEPNNCTAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATQHGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ ++ F+++EL +DSEGR ++T H L NVY P D R+
Sbjct: 110 VGCYGNMDAFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHVDPGKPERLA 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+H+LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P+++ A+TCW TGA NYG+R+D++L
Sbjct: 230 SNLGCQAGSHVGPFIDSYRCFQPKQKGAFTCWSVVTGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLM 357
P L +R+LP G Q ++ L+
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILHFLV 344
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+PLC+GH EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCRGHGEPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
>gi|395819091|ref|XP_003782935.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Otolemur
garnettii]
Length = 518
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 187/390 (47%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVS----------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++L +ADIIC QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGEVHREPSKCAPVAIGRILSELNADIICLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ A PVAAEEG +GLL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------NCATPVAAEEGLSGLLATQKGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY PR D R+
Sbjct: 110 VGCYGNMDEFTQEELRGLDSEGRALLTQHKIHTEEGKERTLTLINVYCPRVDPGKPERLA 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLESFEEDPGRKWMDGLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P+++ A+TCW TGA NYG+RID++
Sbjct: 230 SNLGCQSGSHVGPFIDSYRYFQPKQKGAFTCWSVVTGARHLNYGSRIDYV---------- 279
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
L V +L D + GSDH PV L P +P
Sbjct: 280 --LGDRTLVIDTFQASFLLPD-------------------VMGSDHCPVGAVLNVSP-VP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
PLC GH+EPCV R VKKPGP GR F++CAR +GP ++ + C +F W
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRCFYICARPQGPPTDLSSRCNFFLW 514
>gi|440907085|gb|ELR57275.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos grunniens mutus]
Length = 514
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 192/387 (49%), Gaps = 74/387 (19%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 218 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLM 357
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|62751813|ref|NP_001015577.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
gi|73921675|sp|Q5E9N9.1|APEX2_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|59858127|gb|AAX08898.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 514
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 192/387 (49%), Gaps = 74/387 (19%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 218 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLM 357
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|296470685|tpg|DAA12800.1| TPA: DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
Length = 514
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 192/387 (49%), Gaps = 74/387 (19%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 218 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLM 357
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|301114885|ref|XP_002999212.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
gi|262111306|gb|EEY69358.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
Length = 482
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 193/385 (50%), Gaps = 81/385 (21%)
Query: 1 MKIVTYNVNGLR---QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYES 57
+++VT+NVNGLR QR+ Q +L + L+S +ADIIC QETKL R EL +LV G+++
Sbjct: 5 LRLVTWNVNGLRAVLQRLEQ--NLLQFLESLEADIICLQETKLTRSELDEELVRPPGFDA 62
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG-LE 116
F+S R R GYSGV TF + P VAAEEG TG +T + G L
Sbjct: 63 FYSFCR----HRGGYSGVVTFVKGDLP--------TVAAEEGLTGHWQTKDNVGHVGSLH 110
Query: 117 DFSKDELLK-IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 175
D ++L +++EGRC+ITDH F+L N Y P S D R+++KLQF +L+ R L
Sbjct: 111 DELPSKILNDLEAEGRCIITDHQTFVLLNTYCPALASAD--RLEYKLQFHGLLEDRVNAL 168
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDA------GPDFAKNEFRIWFRSMLVESGGSFF---- 225
+R+ VVGD+NIA ID CD G F + R W S + SG +
Sbjct: 169 RAANKRVIVVGDINIAHREIDHCDPHAHRDDGSSFGDHPCRKWMDSFVGVSGEKYLPNPH 228
Query: 226 --------------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
D +R HP++ +AYTCW + TGA Q NYGTRID+IL A P
Sbjct: 229 SDDIVDGEPAVKMIDTYRHFHPDQTKAYTCWNTQTGARQTNYGTRIDYIL-ADP------ 281
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM-CLGEVPEIP 330
F+ C V+ C ID +R GSDH PV M C E+
Sbjct: 282 -----TFIEC-VSSCS--IDAERL-----------------GSDHCPVLMSCTVELETSS 316
Query: 331 QHS---TPSLASRYLPIIRGVQQTL 352
+ T +L +R G QQ++
Sbjct: 317 STNTGITAALCARNFAEFSGTQQSI 341
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 561 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 620
LEW ++ PLC +P V R V K +GR+F+VC + G NP+A C +F
Sbjct: 410 LEWAQVLNGRPPPTPLCHC-GQPTVLRSVIKTNENWGRKFYVCTKPAGEKGNPDARCDFF 468
Query: 621 KWAFSKSKQK 630
KW K +K
Sbjct: 469 KWVDKKGTKK 478
>gi|61554419|gb|AAX46554.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 407
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 192/387 (49%), Gaps = 74/387 (19%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 218 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLM 357
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
>gi|344297470|ref|XP_003420421.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Loxodonta
africana]
Length = 516
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 190/390 (48%), Gaps = 74/390 (18%)
Query: 1 MKIVTYNVNGLRQRVS----------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
++++++N+NG+R + +L +LLD DADI+CFQETK+ R L L
Sbjct: 2 LRVLSWNINGIRSPLQGAVCQEPNNCTAMALGRLLDELDADIVCFQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL +
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLASQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGQEKTLTLINVYCPHADPGKPERLA 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 217
FK+ F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMHFYRLLQIRAEALLEAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW +GA NYG+R+D++L
Sbjct: 230 SVLGCQAGAHIGPFIDSYRCFQPKKEGAFTCWSVVSGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRALVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q + L++ E
Sbjct: 318 TKQCPPLCTRFLPEFAGTQLKIRHFLIRLE 347
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 497 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQD------EKKGKRF 550
S +S Q+ + S+ P + L GV + + +Q+ E + K
Sbjct: 382 SQAGSSRGQKNLMSYFQPSSSHPQASPDLELPSLMGVPVTPVTPEQEAAAKMVEVQAKAS 441
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 610
K V L W+ + + +PLC GH EPCV R VKKPGP GR F++CAR GP
Sbjct: 442 ETKYEKEVRTLCWKSVLA-GPSPMPLCWGHGEPCVIRTVKKPGPNLGRCFYICARPRGPP 500
Query: 611 SNPEANCGYFKW 622
++P A C +F W
Sbjct: 501 TDPSARCNFFLW 512
>gi|321477228|gb|EFX88187.1| hypothetical protein DAPPUDRAFT_305561 [Daphnia pulex]
Length = 476
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 130/373 (34%), Positives = 183/373 (49%), Gaps = 62/373 (16%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
IVT+N+NG+R S +L+ L DS ADIIC QETK+ R L + DGY SF+S +
Sbjct: 4 IVTWNINGIR---SSQQNLKDLFDSLGADIICLQETKITRDMLDESTALVDGYSSFYSFS 60
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDFSK 120
R R+GYSGVAT+C K+ +S P AEEG G KI + +
Sbjct: 61 RK----RSGYSGVATYC--KNSYS------PFQAEEGLAGTFNVHDDKIDFYDNVHSSFT 108
Query: 121 DELLK-IDSEGRCVITDHGH--------FILFNVYGPRADSEDTVRIQFKLQFFHVLQKR 171
DE L+ +D+EGRCV+T H ++ NVY P A D R+ +KL+F+ L R
Sbjct: 109 DEGLRALDAEGRCVMTLHKFKKEETSISLVVINVYCPNAGENDE-RLPYKLEFYRALNLR 167
Query: 172 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
L QG + V+GD+N++ ID C+ F K+ R+W L E GG F D FR
Sbjct: 168 CHDFLSQGYYVIVLGDMNVSHRLIDHCEPEDVSSFPKSPSRLWLDGFLHEGGGKFVDSFR 227
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 289
+P + +A+TCW + A NYGTRID+IL + N +T + +C I+
Sbjct: 228 HLYPTKEKAFTCWNTKLSARVNNYGTRIDYILLS-------------NQLTDALQDCIIM 274
Query: 290 IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQ 349
D + GSDH PV L + IP P+L +++ G Q
Sbjct: 275 SD-------------------VYGSDHCPVKSSLA-LDIIPSTKLPALCTKFFKEFSGKQ 314
Query: 350 QTLVSVLMKREVA 362
+ + KR +A
Sbjct: 315 LKMSTFFCKRTLA 327
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+E C R VKK GP R+F+ C+RA G +S+ A C +F WA
Sbjct: 426 PLCSGHQEACTLRTVKKKGPNMNRQFWTCSRATGHSSDLNAQCNFFVWA 474
>gi|354476041|ref|XP_003500233.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus
griseus]
gi|344246210|gb|EGW02314.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus griseus]
Length = 517
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 191/389 (49%), Gaps = 73/389 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLSCQESSNCPTALRRILDKLDADIVCLQETKVTRDVLTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + PVAAEEG +G+ T +
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSTTPVAAEEGLSGVFATLNGDV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR V+T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRAVLTQHKIRTSEGKEKTLTLINVYCPHADPGKPERLSF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 218
K++F+ +LQ R E LL G + ++GDLN A ID CDAG F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDAGSMECFEEDPGRKWMDGLLS 229
Query: 219 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
G G F D +R HP++ +A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGMEAGSQTGLFMDSYRCFHPKQEKAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRTLVIDTFQ---------TSFLLPEVMGSDHCPVGAVL-NVSCMPA 317
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 544 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 603
E+K K K+ V W+ + + +PLC GH+EPCV R VKK GP GR F++C
Sbjct: 436 EEKAKVSEAKDEKEVRTSFWKSMLS-GPSPMPLCGGHREPCVMRTVKKAGPNLGRHFYMC 494
Query: 604 ARAEGPASNPEANCGYFKWA 623
AR GP S+P + C +F W+
Sbjct: 495 ARPRGPPSDPSSRCNFFLWS 514
>gi|73921677|sp|Q68G58.1|APEX2_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|51259055|gb|AAH78633.1| Apurinic/apyrimidinic endonuclease 2 [Mus musculus]
Length = 516
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 191/389 (49%), Gaps = 73/389 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 218
K++F+ +LQ R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLS 229
Query: 219 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 450 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 509
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 510 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 569
NK+P + ++KG+R W+ +
Sbjct: 432 TVLEEKNKVP---------------------ESKDEKGER----------TAFWKSMLS- 459
Query: 570 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|444520956|gb|ELV13065.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Tupaia chinensis]
Length = 517
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 187/387 (48%), Gaps = 74/387 (19%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++L+ DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYQEPSNCAPMAMGRILNELDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPMAAEEGLSGLLATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQ 159
+ ++ F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDAFTQEELRALDSEGRALLTQHKIRTWEGKEKILTLVNVYCPHADPGKPERLA 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML 217
FK++F+H+LQ R E LL G + ++GDLN A ID +A F ++ R W +L
Sbjct: 170 FKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWNAATLECFEEDPGRKWMDRLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
GSF D +R PE+ A+TCW +GA NYG+RID++L
Sbjct: 230 SNLSCQADSHIGSFVDTYRCFQPEQEGAFTCWSVVSGARHLNYGSRIDYVL-------GD 282
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
L F + L+ + GSDH PV L V +P
Sbjct: 283 RTLVRDTF------QASFLLP------------------EVMGSDHCPVGAVL-NVSCVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLM 357
PSL +R+LP G Q + L+
Sbjct: 318 AKQCPSLCTRFLPEFAGTQLKIFPFLV 344
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 497 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERN 556
S +S Q+ + HS+ P + L + + + +E K ++ R
Sbjct: 382 SQVGSSRGQKNLTSYFRHSSSCPQVSPDLELPSLPLMGALITPKTSEETVAKVVEEQARV 441
Query: 557 NVALLEWRRIQQLMETSI-------PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
+ A E + I+ L S+ PLC GH+EPCV R VKKPGP GRRF+VCAR +GP
Sbjct: 442 SGAKDE-KEIRTLFWKSVLSGPLPTPLCGGHREPCVMRTVKKPGPNLGRRFYVCARPQGP 500
Query: 610 ASNPEANCGYFKW 622
S+P + C +F W
Sbjct: 501 PSDPLSRCNFFLW 513
>gi|21541818|ref|NP_084219.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Mus musculus]
gi|19912820|dbj|BAB88654.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|22830557|dbj|BAC11807.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|26341548|dbj|BAC34436.1| unnamed protein product [Mus musculus]
gi|148675566|gb|EDL07513.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_a [Mus musculus]
Length = 516
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 191/389 (49%), Gaps = 73/389 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 218
K++F+ +LQ R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLS 229
Query: 219 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 33/174 (18%)
Query: 450 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 509
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 510 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 569
NK+P + ++KG+R A W+ +
Sbjct: 432 TMLEEKNKVP---------------------ESKDEKGER--------TAF--WKSMLS- 459
Query: 570 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|120586985|ref|NP_001073361.1| uncharacterized protein LOC317628 [Rattus norvegicus]
gi|119850781|gb|AAI27531.1| Similar to apurinic/apyrimidinic endonuclease 2 [Rattus norvegicus]
gi|149031345|gb|EDL86343.1| rCG38932, isoform CRA_a [Rattus norvegicus]
Length = 516
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 189/389 (48%), Gaps = 73/389 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLAGQEPSNSPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
++F+++EL +DSEGR +T H L NVY P AD R+ F
Sbjct: 110 GCYGNTDEFTQEELRVLDSEGRAFLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 218
K++F+ +LQ R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLS 229
Query: 219 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
G G F D FR HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGNEAGPHIGHFMDSFRYFHPKQQRAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRSLVIDTFQ---------ASFLLPEVMGSDHCPVGAVLN-VSCVPA 317
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 35/175 (20%)
Query: 450 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE-EV 508
H R RK + Q SL S+F SN+S + + +L + + +T T ++E +
Sbjct: 373 IHSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAM 430
Query: 509 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 568
NK+P +DEK+ V W+ +
Sbjct: 431 ATVVKEKNKVP--------------------EAKDEKE-----------VRTAFWKSMLS 459
Query: 569 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKK GP FGR F++CAR GP S+P + C +F W+
Sbjct: 460 -GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|307105550|gb|EFN53799.1| hypothetical protein CHLNCDRAFT_136485 [Chlorella variabilis]
Length = 1072
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 170/333 (51%), Gaps = 81/333 (24%)
Query: 2 KIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
+++++NVNGLR R +L + L S +ADI+C QETKLRR ++ DL + DG+++FF
Sbjct: 11 RVLSFNVNGLRALLRDRLKLTLSQFLISLNADIVCMQETKLRRCDIDRDLAIVDGWDAFF 70
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET------------S 107
SC++++ TGYSG AT+ R T VALP A+EEGFTG +
Sbjct: 71 SCSQSA----TGYSGTATYVR-------TAVALPFASEEGFTGCAALAAAMAGTTAGSHN 119
Query: 108 GSKIME----GLED-FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQF 160
G+ M L D ++ +EL ++D EGR +TDHG F+LFN+YGP ++ R+Q+
Sbjct: 120 GAATMAEPHPALADQYTVEELAELDGEGRVTVTDHGAFVLFNIYGPAITKQEVAEDRMQY 179
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK--NEFRIWFRSML- 217
KL+FF L+ RW LL QGR + VGDLNI P +D A F + R+W R +L
Sbjct: 180 KLRFFSALELRWRDLLRQGRAVVAVGDLNICPTPLDYPVADLQFFRPSRPDRLWLRRLLH 239
Query: 218 --------------------------VESGGS--------------------FFDVFRSK 231
S G+ D FR+
Sbjct: 240 GSTTTGGSNSGGGGGDQSPPAAAAAAAGSNGNGVAGIYGAGASSSNGGSGGILVDTFRAF 299
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 264
HP R+ A+TCW + T A NYG+RID +L AG
Sbjct: 300 HPTRQNAFTCWSTATSARVNNYGSRIDLVLTAG 332
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGP----TFGRRFFVCARAEGPASNPEANCG 618
WR IQQ + +P C GH+EP V + V K GP GR F+ CAR +GP P C
Sbjct: 564 WRTIQQRFQ--VPQCPGHREPAVLKKVNKSGPNKGNAAGRYFYTCARPDGP--KPHGKCE 619
Query: 619 YFK 621
+FK
Sbjct: 620 FFK 622
>gi|426396094|ref|XP_004064290.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2
[Gorilla gorilla gorilla]
Length = 525
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 192/397 (48%), Gaps = 81/397 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGL 103
+ +GY S+FS +R R+GYS GVATFC+ + A PVAAEEG +GL
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSEVPCLFPGVATFCK--------DNATPVAAEEGLSGL 109
Query: 104 LETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADS 152
T + +++F+++EL +DSEGR ++T H L NVY P AD
Sbjct: 110 FATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADP 169
Query: 153 EDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFR 210
R+ FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R
Sbjct: 170 GRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGR 229
Query: 211 IWFRSMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
W S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 KWMDSLLSSLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL-- 287
Query: 264 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ ++ID + + + GSDH PV L
Sbjct: 288 --------------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL 318
Query: 324 GEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
V +P P L +R+LP G Q ++ L+ E
Sbjct: 319 -SVSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 354
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 474 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 522
>gi|12862077|dbj|BAB32346.1| unnamed protein product [Mus musculus]
Length = 385
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 190/389 (48%), Gaps = 73/389 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPXKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 218
K++F+ +LQ R E LL G + ++GDLN A ID CDA F + R W +L
Sbjct: 170 KMRFYRLLQMRAEPLLAAGSHVIILGDLNTAHRPIDHCDASSLECFEXDPGRKWMDGLLS 229
Query: 219 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
>gi|301792507|ref|XP_002931219.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Ailuropoda melanoleuca]
gi|281349729|gb|EFB25313.1| hypothetical protein PANDA_022064 [Ailuropoda melanoleuca]
Length = 516
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 189/388 (48%), Gaps = 74/388 (19%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + P+AAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSVTPMAAEEGLSGLLATHNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD+ R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADAGKPERLS 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 218 VESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G GS F D +R P++ A+TCW + +GA NYG+R+D++
Sbjct: 230 SNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYV---------- 279
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
L V D D R + GSDH PV L V +P
Sbjct: 280 --LGDRTLVI------DTFQDSFRLP-------------EVMGSDHCPVGAVL-SVSSMP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMK 358
P L +R+LP G Q ++ L++
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVR 345
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 513
>gi|141447778|gb|ABO87600.1| DNA lyase [Coccidioides immitis]
Length = 606
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 175/672 (26%), Positives = 275/672 (40%), Gaps = 125/672 (18%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S ++ D + DII FQETK+++++L+ D+V+ G+
Sbjct: 3 LRLTTWNVNGIRNPFSYPPRAENKSFERMFDILEGDIIVFQETKIQKRDLRDDMVLIPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI---- 111
+ FFS R + GYSGV + R + P+ AEEG TG L + GS +
Sbjct: 63 DCFFSLPRH----KKGYSGVVIYTRCSA-------CSPIRAEEGLTGTLSSPGSPLPYRE 111
Query: 112 ------MEGLEDFSKDELLKID-----SEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ G + ELL ID SEGRCVI + F+L VY P + D R F
Sbjct: 112 LPEDDQIGGYPTPEQLELLPIDPVTIDSEGRCVILEFPAFVLLGVYCPA--NRDETRDVF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEFR 210
+ F +VL R L G+R+ ++GD+NI+ ID +F + R
Sbjct: 170 RAAFLNVLDMRVRNLTAMGKRVVLMGDMNISREVIDSAHIIEAIRKGKTTETEFLSSPSR 229
Query: 211 IWFRSMLVESGGS----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
F + LV GG+ DV R HP+R YTCW A NYG RID++
Sbjct: 230 RLF-NQLVGGGGARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDYV 288
Query: 261 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
LC+ +D + W + + L GSDH PVY
Sbjct: 289 LCS--------------------------VDMEDWFT------ESNIQEGLMGSDHCPVY 316
Query: 321 MCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 380
+ + T L P G+ + + R+ S SG L E +
Sbjct: 317 GIINDTVSCRNMDTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPEFHR 368
Query: 381 TGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 440
+D + + + + L S + ++ ++++
Sbjct: 369 RRSLKDMFQTASGASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKGQPK 428
Query: 441 QGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTSLNV 494
+ N S RA+K + GQ +L SF + R + ++ S LNV
Sbjct: 429 RALENWTSLSPAKRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EILNV 485
Query: 495 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 554
+ + + + + PES + N S S++ + ++ + G+R +
Sbjct: 486 PDEIKEHTGNVRASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAISSA 534
Query: 555 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 614
+ + A L +R + P C+GH EPC+ V KKPGP GR F++C R GP+ N E
Sbjct: 535 KESWAKLFTKR-------APPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSGNKE 587
Query: 615 AN----CGYFKW 622
C F W
Sbjct: 588 IGTPWRCSTFIW 599
>gi|402223533|gb|EJU03597.1| DNase I-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 616
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 181/678 (26%), Positives = 277/678 (40%), Gaps = 138/678 (20%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDS--FDADIICFQETKLRRQELKSDLVMA 52
M+I+T+N+NG+R ++Q+ +L +L+S +DI CFQE K+ R + + +
Sbjct: 1 MRILTWNINGVRT-LNQYHPWYTLKTLEAMLESEEIKSDIFCFQEMKIARTAIDRSIALP 59
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM 112
Y++FFS KG GYSGVA + + + P+ AEEG +GLL+ S +
Sbjct: 60 GPYDAFFSLPLGKSKG--GYSGVAVY-------ADSRTVRPMKAEEGLSGLLQPKPSLSL 110
Query: 113 EG----------LEDFSKDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
E L DF DE ++++D+EGR ++ D G F+L N Y P SE+
Sbjct: 111 EERVSRHYRQAHLLDFIPDEKGAIPSDVIELDNEGRALVLDFGLFVLINTYCPAEASEN- 169
Query: 156 VRIQFKLQFFHVLQKRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----- 209
R+ FK+ F ++L++R L+ + R + VVGD+NI ID CD ++ +
Sbjct: 170 -RLSFKINFHNMLRERVRILIEEEHREVIVVGDINICSQPIDHCDGRLQSKRSVWWDHPP 228
Query: 210 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 269
R+W R L + G D+ R P+R YTCW + A NYGTRID++LC
Sbjct: 229 RVWLRDWL-QPTGKLVDLTRKFWPDRTGMYTCWNTLIDARTANYGTRIDYVLCT------ 281
Query: 270 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 329
+ + DIL + + GSDH PV++ + +
Sbjct: 282 -------EGLIPWIMHSDILPN-------------------VHGSDHCPVFVDFFDEITL 315
Query: 330 PQHSTPSLAS--RYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC 387
P L +Y P + + R + +FS P S+ G T
Sbjct: 316 PDGKVRRLREEMKYDP----------TRALPRIATRNWD--EFSNKQPLLSSFFGKTA-I 362
Query: 388 SENVDRSLNNYCD---SGILQGVYCSSSNQESEGEFTKTIENC--RDSANVASHSTITQG 442
+ +DR ++ CD + Q + S + N RD+A + + +
Sbjct: 363 TPPIDRPPSSSCDPKEQPMSQAPETTFETSHSPDSLSDAASNAVSRDTAPLPAQVVVGAP 422
Query: 443 SSNHISPFHV-----DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 497
SS S ++ + K+ + QL L SFF + S
Sbjct: 423 SSAPKSQRQATSQDRNKGKDAKKRPKNRQLKLSSFFGAK----------------GAAES 466
Query: 498 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 557
T S+ + +S S + P S E+ VC + G E +
Sbjct: 467 STQAVPSKVKSSKSRTPSQRTPSQSTQNSTSEIEDSEDDVCWEKIIGQSGA----SESSK 522
Query: 558 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------- 610
A W I L S P C GH P VV KPGPT GR F++C+ G
Sbjct: 523 AA---WSNI--LTRPSAPKCSGHGLPAKEFVVNKPGPTKGRHFYLCSLPVGTGYDAGHSK 577
Query: 611 -----SNPEANCGYFKWA 623
NPE C +F WA
Sbjct: 578 RLREEVNPEFRCNFFMWA 595
>gi|152002965|gb|ABS19620.1| DNA lyase [Coccidioides posadasii]
Length = 606
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 173/672 (25%), Positives = 275/672 (40%), Gaps = 125/672 (18%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S ++ D + DII FQETK+++++L+ D+V+ G+
Sbjct: 3 LRLTTWNVNGIRNPFSYQPWRENKSFERMFDILEGDIIVFQETKIQKRDLRDDMVLIPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI---- 111
+ FFS R + GYSGV + R + P+ AEEG TG L + GS +
Sbjct: 63 DCFFSLPRH----KKGYSGVVIYTRCSA-------CSPIRAEEGLTGTLSSPGSPLPYRE 111
Query: 112 ------MEGLEDFSKDELLKID-----SEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ G + ELL ID SEGRCVI + F+L VY P + D R F
Sbjct: 112 LPEDDQIGGYPTPEQLELLPIDPVTIDSEGRCVILEFPAFVLLGVYCPA--NRDETRDVF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEFR 210
+ F +VL R L G+R+ ++GD+NI+ ID +F + R
Sbjct: 170 RAAFLNVLDMRVRNLTAMGKRVVLMGDMNISREVIDSAHVIEAIRKGKTTETEFLSSPSR 229
Query: 211 IWFRSMLVESGGS----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
F + LV GG+ DV R HP+R YTCW A NYG RID++
Sbjct: 230 RLF-NQLVGGGGARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDYV 288
Query: 261 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
LC+ +D + W + + L GSDH PVY
Sbjct: 289 LCS--------------------------VDMEDWFT------ESNIQEGLMGSDHCPVY 316
Query: 321 MCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 380
+ + +T L P G+ + + R+ S SG L E +
Sbjct: 317 GIINDTVSCRNMNTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPEFHR 368
Query: 381 TGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 440
+D + + + + L S + ++ ++++
Sbjct: 369 RRSLKDMFQTASGASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKGQPK 428
Query: 441 QGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTSLNV 494
+ N + RA+K + GQ +L SF + R + ++ S LNV
Sbjct: 429 RALENWTALSPAKRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EILNV 485
Query: 495 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 554
+ + + + + PES + N S S++ + ++ + G+R +
Sbjct: 486 PDEIKEHTGNVRASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAISSA 534
Query: 555 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 614
+ + A L + + P C+GH EPC+ V KKPGP GR F++C R GP+ N E
Sbjct: 535 KESWAKL-------FTKKAPPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSGNKE 587
Query: 615 AN----CGYFKW 622
C F W
Sbjct: 588 IGTPWRCSTFIW 599
>gi|348683853|gb|EGZ23668.1| hypothetical protein PHYSODRAFT_481346 [Phytophthora sojae]
Length = 476
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 191/382 (50%), Gaps = 74/382 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
+++VT+NVNGLR + + G +L++ L+ +ADIIC QETK+ R EL +LV G+++F+
Sbjct: 5 LRLVTWNVNGLRAVLQRLGQNLQQFLEGLEADIICLQETKMTRSELDQELVRPPGFDAFY 64
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG--LED 117
S R R GYSGV TF + P VAAEEG TGL + S G +
Sbjct: 65 SFCRH----RGGYSGVVTFVKSDLP--------TVAAEEGLTGLWQAKDSVGHLGSLQNE 112
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
S + +++EGRCVITDH F+L N Y P S D R+++KLQF +L+ R L
Sbjct: 113 LSSKLVSDLEAEGRCVITDHQAFVLLNTYCPALASAD--RLEYKLQFHALLEDRVRALRR 170
Query: 178 QGRRIFVVGDLNIAPAAIDRCDA------GPDFAKNEFRIWFRSML-------------V 218
+R+ VVGD+NIA ID CD G FA + R W +
Sbjct: 171 ANKRVVVVGDINIAHREIDHCDPDTHRADGSSFADHPCRRWMDGFVGKPEEQDCNFYSEP 230
Query: 219 ESGGSF--FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+SG F D FR +P + +A+TCW + TGA Q NYGTRID+IL P LQS
Sbjct: 231 KSGYEFKMVDAFRHFYPTQTKAFTCWNTQTGARQTNYGTRIDYIL-VDPAF-----LQS- 283
Query: 277 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM-CLGEV---PEIPQH 332
V C I D RL GSDH PV + C E+ I +
Sbjct: 284 ------VTACSIEAD------------------RL-GSDHCPVVISCTVELETDSSINRG 318
Query: 333 STPSLASRYLPIIRGVQQTLVS 354
T +L+++ G QQ++ S
Sbjct: 319 ITAALSAKNFVEFSGTQQSIKS 340
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 561 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 620
LEW+++ PLC +P V R V K +GR+F+VC + G NP+A C +F
Sbjct: 404 LEWQQVLSGRPPPTPLCYC-GQPTVLRSVVKANENWGRKFYVCTKPAGERGNPDARCEFF 462
Query: 621 KWAFSKSKQK 630
KWA +K +K
Sbjct: 463 KWADNKGPKK 472
>gi|393240732|gb|EJD48257.1| DNase I-like protein [Auricularia delicata TFB-10046 SS5]
Length = 613
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 131/403 (32%), Positives = 182/403 (45%), Gaps = 97/403 (24%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+IVT+N+NG+R + GS R +LD A I+CFQE K RQ+L + DGY
Sbjct: 1 MRIVTWNINGVRTLPKYHPWNGLGSWRAILDGIGASIVCFQEMKTTRQQLDRATALPDGY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------- 108
+SFFS + GYSGVA + + A+P AEEG + L+ +
Sbjct: 61 DSFFSFPMQ----KGGYSGVAVYTKRTD-------AVPFKAEEGLSARLQPTKPPLSAEE 109
Query: 109 --SKIMEGLEDFSKD-----------ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
S+ ++D + + ++L++D EGR ++ D G F+L N+Y P SE
Sbjct: 110 RVSRAYPDIDDLAAEFIPNDDGSVPQDVLELDGEGRALVLDFGVFVLVNLYCPAETSE-- 167
Query: 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFR 210
RI FK F +L +R L +GR I VVGD+NI +D CD F + E R
Sbjct: 168 ARIPFKANFHRLLGERLRILRTEGREIIVVGDINICSTPLDHCDFTLPSTHETFFERETR 227
Query: 211 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+W R +L E G F DV R HP R+ YTCW + A + NYGTRID+ILC
Sbjct: 228 VWMRDLL-EPVGPFVDVVRRFHPGRKGMYTCWNTRINARESNYGTRIDYILCTS------ 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYM-------- 321
G P KGG + ++GSDH PVY+
Sbjct: 281 ---------------------------GLVPWMKGGDIQASVKGSDHCPVYVDLHDEIVG 313
Query: 322 ----------CLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 354
+ ++PE P P LA+ Y + Q L S
Sbjct: 314 EDRNVVKLRDAMKQIPE-PHAPPPRLAACYWDVFSTRQTVLGS 355
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 569 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 616
L P C H +P + R K GP G+ F++C+ GP +P+
Sbjct: 523 LAPVKPPCCDVHGKPTLRRTTTKQGPNKGKVFYICSMPLGPGYDAGRGKRLREEVDPQYK 582
Query: 617 CGYFKWA 623
C YFKW
Sbjct: 583 CDYFKWG 589
>gi|148675569|gb|EDL07516.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_d [Mus musculus]
Length = 530
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/396 (31%), Positives = 191/396 (48%), Gaps = 80/396 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 9 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 68
Query: 52 ADGYESFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
+GY S + + R+GYS GVATFC+ + A PVAAEEG +G+
Sbjct: 69 VEGYNS----YFSFSRSRSGYSECSCPSPGVATFCK--------DSATPVAAEEGLSGVF 116
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSE 153
T I +++F+++EL +DSEGR ++T H L NVY P AD
Sbjct: 117 ATLNGDIGCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPG 176
Query: 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRI 211
R+ FK++F+ +LQ R E LL G + ++GDLN A ID CDA F ++ R
Sbjct: 177 KPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRK 236
Query: 212 WFRSMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 264
W +L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 237 WMDGLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--- 293
Query: 265 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 324
+ ++ID + + + GSDH PV L
Sbjct: 294 -------------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL- 324
Query: 325 EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 325 NVSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 360
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 450 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 509
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 387 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 445
Query: 510 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 569
NK+P +DEK ER W+ +
Sbjct: 446 TMLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 473
Query: 570 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 474 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 527
>gi|26354044|dbj|BAC40652.1| unnamed protein product [Mus musculus]
Length = 523
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/396 (31%), Positives = 191/396 (48%), Gaps = 80/396 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
+GY S + + R+GYS GVATFC+ + A PVAAEEG +G+
Sbjct: 62 VEGYNS----YFSFSRSRSGYSECSCPSPGVATFCK--------DSATPVAAEEGLSGVF 109
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSE 153
T I +++F+++EL +DSEGR ++T H L NVY P AD
Sbjct: 110 ATLNGDIGCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPG 169
Query: 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRI 211
R+ FK++F+ +LQ R E LL G + ++GDLN A ID CDA F ++ R
Sbjct: 170 KPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRK 229
Query: 212 WFRSMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 264
W +L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 WMDGLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--- 286
Query: 265 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 324
+ ++ID + + + GSDH PV L
Sbjct: 287 -------------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL- 317
Query: 325 EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 318 NVSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 353
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 33/174 (18%)
Query: 450 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 509
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 380 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 438
Query: 510 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 569
NK+P + ++KG+R A W+ +
Sbjct: 439 TMLEEKNKVP---------------------ESKDEKGER--------TAF--WKSMLS- 466
Query: 570 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 467 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 520
>gi|336366993|gb|EGN95339.1| hypothetical protein SERLA73DRAFT_171084 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379716|gb|EGO20871.1| hypothetical protein SERLADRAFT_477369 [Serpula lacrymans var.
lacrymans S7.9]
Length = 618
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 180/689 (26%), Positives = 287/689 (41%), Gaps = 147/689 (21%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + + S + +L+ ADIICFQE K+ R ++ D+ + D Y
Sbjct: 1 MRILSWNINGIRTLPQYHPWNSYKSCQAILEQLQADIICFQEMKITRSAIERDVAVPDTY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------- 108
SFFS +KG GYSGV + ++ A+P+ EEG +G ++
Sbjct: 61 ASFFSFP--INKG--GYSGVGVYADART-------AVPLKGEEGLSGKIQPKPQLSADEQ 109
Query: 109 -------SKIMEGLED---FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
S M+ L D + +L +D+EGR ++ D G F+L N Y P S+ R+
Sbjct: 110 ISKSYPCSHEMKLLPDELGNTPSDLSVLDAEGRAIVLDFGLFVLINTYCPNETSD--ARL 167
Query: 159 QFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWF 213
FK+ + ++LQ+R L+ +GR + VVGD+NI +D CD F ++ R WF
Sbjct: 168 PFKMNYHYMLQERVRGLMEEGREVLVVGDINICATPLDHCDGNLASNASYFHEHPARAWF 227
Query: 214 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 273
S L + G D+ R P+R+ YTCW + A + NYGTR+D+IL
Sbjct: 228 HSWL-DPTGHMIDIVRRFWPDRKGMYTCWNTKISARETNYGTRVDYILV----------- 275
Query: 274 QSHNFVTCHVNECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCLGEVPEI-- 329
+H V W G + L+GSDH P+Y+ L + +
Sbjct: 276 -THGLVP----------------------WVKHGDIQPSLKGSDHCPIYIDLHDSITLDS 312
Query: 330 --------------PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLP 375
+ P +A++Y G +QTL+S +K+G + SG+ P
Sbjct: 313 GVKLHLRDVMQMNGEKREPPRIAAKYWEEFSG-KQTLLSTFF----SKKGGALP-SGASP 366
Query: 376 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 435
+ + T S + + S LQ N + + S+ S
Sbjct: 367 SPAELTPVVTGPSVTLPAEV-----STTLQVTPVRLPNTSGAS--STSSSQPPYSSKQTS 419
Query: 436 HSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRS---NVSHDDNNSITDTSL 492
+ +Q P + RK +KK + GQ SL +FF + S + H + S + L
Sbjct: 420 APSPSQKRKLLTEP--RESMRKASKKVKKGQTSLSTFFSQPSASQTLPHTPSVSRMEDVL 477
Query: 493 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 552
+ ++ T+ P+ + S DY ++ EL + S +
Sbjct: 478 VILHADTN--------PDGYIAS------DYRMAL-ELSNSQEKIVSQSCASATSSSSHN 522
Query: 553 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 612
K W Q L P C H EP V KPGP G+ FF+C+R GP +
Sbjct: 523 KT-------AWS--QLLAPVQPPKCLVHGEPAKEFTVHKPGPNKGKNFFICSRPVGPGYD 573
Query: 613 P------------EANCGYFKWAFSKSKQ 629
+ C +FKW+ K+
Sbjct: 574 KGKAERLREEVDHQYRCNFFKWSSEVKKE 602
>gi|392589509|gb|EIW78839.1| DNase I-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 638
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 183/694 (26%), Positives = 274/694 (39%), Gaps = 144/694 (20%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + F + +L+ ADIICFQE K R L D+ + D +
Sbjct: 1 MRILSWNINGVRTLPQYHPWNSFKLFQGILEHLKADIICFQEMKTSRTALVKDVAVPDHF 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+SFFS + KG GYSGVA + + T + AEEG +G L
Sbjct: 61 DSFFSFP--ASKG--GYSGVAVY-------TDTRTVTALKAEEGLSGTLQPKPPFQTEER 109
Query: 105 ---------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
E +EG D D L +D EGR ++ D G F+L NVY P S+
Sbjct: 110 ISRSYPYAHEMDLMSSVEGESDAPSD-LSVLDEEGRGLVIDLGLFVLINVYCPNETSD-- 166
Query: 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFR 210
R+ +K+ + +LQ+R L+ +GR++ VVGD+N+ A ID CD F + R
Sbjct: 167 TRLPYKMNYHFMLQERVRKLVAEGRQVMVVGDINVCAAPIDHCDGHLPSNVETFYDHPAR 226
Query: 211 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
WF++ G DV R PER+ YTCW + A NYGTRID++L
Sbjct: 227 AWFQNWR-HPQGEMIDVLRQFWPERKGMYTCWNTKISARDTNYGTRIDYVLVT------- 278
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCLGEVPE 328
PG P W G + ++GSDH P+Y+ L + E
Sbjct: 279 --------------------------PGLMP-WIRHGDIQASVKGSDHCPIYVDLRD--E 309
Query: 329 IPQHSTPSLASR-YLPIIRGVQQTLVSVLMKREVAKQGKSCKFS------GSLPAESNST 381
I S + + +P+ Q+ + KR GK S G PA +
Sbjct: 310 ITTESGKIIYLKDVMPVDGNAQRVPPRIAAKRWDEFSGKQQLLSTFFGKKGKAPATPQAD 369
Query: 382 GDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE---------------N 426
++ ++ V + SG ++ E ++I+
Sbjct: 370 S-SQPAAKEVPPATKTRQSSGTRTASQSATDTIEHPSSIPESIDVDVGSLKPSPSPTPQP 428
Query: 427 CRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNS 486
N +S S+ + P A K AKK + GQ S+ SFF + S N+
Sbjct: 429 SSTPNNPSSQSSSSTAGQKRKLPRAQSAASKPAKKPKPGQSSIASFFAQPLAPSFSPPNT 488
Query: 487 ITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVH-----ELHGVNSSVCSHD 541
TS+ + TD + + V ++ DY ++ E V + S
Sbjct: 489 ---TSIASRSQDTDRNPDRGPVTLPISAADPDLDADYQLALKLSQELEAEPVPPAATSTK 545
Query: 542 QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 601
+ K W + + + P C H EP V K GP G+ F+
Sbjct: 546 ESSKA----------------WSNL--MAPVAAPNCTVHDEPTKLYTVNKQGPNKGKTFY 587
Query: 602 VCARAEGPA------------SNPEANCGYFKWA 623
+C+R GP N E C YFKWA
Sbjct: 588 LCSRPVGPGYDRGRSERLREEVNHEYRCNYFKWA 621
>gi|392565223|gb|EIW58400.1| DNase I-like protein [Trametes versicolor FP-101664 SS1]
Length = 632
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 182/686 (26%), Positives = 274/686 (39%), Gaps = 140/686 (20%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + F S +LD ADIICFQE K R+ L D+ + Y
Sbjct: 1 MRILSWNINGIRTLPKYHPWNTFESCEGILDELKADIICFQEMKSSRESLPRDVALPGHY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
SFFS + + GYSGVA ++++ A P+ AEEG +G L+ E
Sbjct: 61 HSFFSFPVS----KGGYSGVAV-------YANSRTAAPLKAEEGLSGRLQLQPPLSPEER 109
Query: 116 EDFS----------KDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
S DE +D+EGR ++ D G F+L NVY P S+ R+
Sbjct: 110 VSPSYPYPHDITAYPDEQGEVPATFEGLDAEGRGLVVDFGLFVLINVYCPNETSD--ARL 167
Query: 159 QFKLQFFHVLQKRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----RIW 212
FK+ + +LQ+R L+ + R + V+GD+N+ +D + +++ F R W
Sbjct: 168 SFKMNYHLMLQERVRKLIEEEHREVIVLGDINVCATPLDHAEGHFASSQDTFYDHPARAW 227
Query: 213 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
F G DV R+ PER+ YTCW + A + NYG RID+IL L
Sbjct: 228 FHKWR-SPNGPMIDVIRTFWPERKGLYTCWNTKLQARETNYGGRIDYILVTKGLL----P 282
Query: 273 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL--------G 324
SH G + L+GSDH P+Y+ L G
Sbjct: 283 WISH----------------------------GDIQPSLKGSDHCPIYIDLRDEIVLESG 314
Query: 325 EVPEIPQ--------HSTPSLASRYLPIIRGVQQTLVSVLMKREVAK------QGKSCKF 370
E + P LA+++ G Q L + KR V+K Q
Sbjct: 315 ETVTLRDAMQQTDVARDPPRLAAKFWDEFSGKQTVLSAFFGKRAVSKDASNNEQQTPPIL 374
Query: 371 SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 430
SGS ++ G++ +VD L S +S E +K I+ + S
Sbjct: 375 SGS--QRADPPGNSSAVM-DVDVQL-----SATQSASQPIASTPAPSPEVSKKIKPPQPS 426
Query: 431 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 490
+ +T N P + K +K GQ SL SFF K + S + + +
Sbjct: 427 KLAPTSAT------NKRKPLEPTASSSKKRKQVKGQASLASFFSKPAAASPSKSREVIEI 480
Query: 491 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY--SCSVHELHGVNSSVCSHDQDEKKGK 548
+ + T ++L+ + P S +++ DY +C + + S S QD + K
Sbjct: 481 EDDAPTAST-SALAPDTPPLSQAEQDQL-DADYRLACELAQEDAEPSPTPSSSQDPTQKK 538
Query: 549 RFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 608
W + P C H EP V KPGP G+ FF+C+R G
Sbjct: 539 ------------AAWSEL--FAPIQPPHCTVHGEPTKMYTVNKPGPNKGKTFFICSRPVG 584
Query: 609 PASNP------------EANCGYFKW 622
P + C YFKW
Sbjct: 585 PGYDKGKSERLREEVDHRYRCNYFKW 610
>gi|351705897|gb|EHB08816.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Heterocephalus glaber]
Length = 518
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 183/389 (47%), Gaps = 74/389 (19%)
Query: 2 KIVTYNVNGLRQRVS----------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
++V++N+NG+R + ++ + L+ ADI+C QETK+ R L L +
Sbjct: 3 RLVSWNINGIRSPLPGAVCQESNNCPSETMGRTLEELGADIVCLQETKVTRDVLTEPLAI 62
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S+FS +R S GVATFC+ + A PVAAEEG +GL T +
Sbjct: 63 VEGYNSYFSYSRVSSLS----PGVATFCK--------DSATPVAAEEGLSGLFATQNGNV 110
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY PR D E R+ F
Sbjct: 111 GCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPRVDPEKPERLTF 170
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML- 217
K+ F+H+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 171 KMSFYHLLQIRAEALLAAGSHVIILGDLNTAYRRIDHCDAVNLECFEEDPGRKWMDGLLN 230
Query: 218 ---VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
++G G F D +R P++ A+TCW GA NYG R+D+IL
Sbjct: 231 NLECQAGSHMGPFIDTYRYFQPQQEGAFTCWSVVNGARHLNYGCRLDYIL---------- 280
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
+ +++D + + + GSDH PV L V +P
Sbjct: 281 ------------GDRSLVMDTFQ---------ASFLLPEIMGSDHCPVGAVLN-VSSVPA 318
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+ P G Q ++ L+ E
Sbjct: 319 KHCPPLCTRFFPEFAGTQLKILRFLVPLE 347
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
+PLC+GH+EPCV R VKKPGP GRRF++CAR +GP S+P + C +F+W
Sbjct: 466 MPLCRGHREPCVMRTVKKPGPNLGRRFYMCARPQGPPSDPSSRCNFFQW 514
>gi|320163021|gb|EFW39920.1| apurinic/apyrimidinic endonuclease 2 [Capsaspora owczarzaki ATCC
30864]
Length = 734
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 171/380 (45%), Gaps = 93/380 (24%)
Query: 14 RVSQFGSLR--------KLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTS 65
+ S FG +R +LLD+ ADI+CFQETKL ++ ++ + DGY++FFS +
Sbjct: 192 QASGFGPVRSQRSSLLFQLLDALQADIVCFQETKLTAAQVTEEMALVDGYDAFFSFSIAK 251
Query: 66 DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTG-----------------LLETSG 108
D GYSG+AT P+AA++G TG L+T
Sbjct: 252 D----GYSGIAT---------------PIAAQDGLTGRRVVKPPEPSSASVTSVPLQTGD 292
Query: 109 SKIMEGL----EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
+GL D L +DSEGRCV+TDH F+LFN+Y PRADS + R+ FK +F
Sbjct: 293 VIKPDGLLPDYSDMDPTVLDALDSEGRCVVTDHDRFVLFNLYCPRADSAEGERMTFKQEF 352
Query: 165 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC--------DAGPDFAKNEFRIWFRSM 216
+ VLQ R L GR + V GD N+ ID C D DF + R W S
Sbjct: 353 YRVLQLRVNALRTAGRCVIVAGDFNLTHRRIDHCDPENYTTDDGSVDFEAHPSRRWMESF 412
Query: 217 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
L E D FR HP YTCW +T A + NYGTRID+I+ +
Sbjct: 413 LAE---GRVDCFRHFHPLLSSRYTCWRVDTRARETNYGTRIDYIV-------------TD 456
Query: 277 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE--IPQHST 334
+ ++ C L TR GSDH PV + IPQ +
Sbjct: 457 QALLPDISGCYHL-------------------TRFPGSDHCPVVITAAPTLRLTIPQRNP 497
Query: 335 PSLASRYLPIIRGVQQTLVS 354
P L +RYLP + G L S
Sbjct: 498 PKLCARYLPGMGGKTVQLTS 517
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 575 PLCKGHKEPCVARVVKK-PGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
P C GH EPCV R VK GR+F+VC R +G +NPEA+C +FKW
Sbjct: 685 PRCTGHGEPCVERTVKNGSAQNIGRKFYVCGRPKGHTNNPEASCNFFKW 733
>gi|359324281|ref|XP_003640323.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Canis
lupus familiaris]
Length = 517
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 193/391 (49%), Gaps = 80/391 (20%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKL--RRQELKSD 48
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R +++
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTSERSKIQDP 61
Query: 49 LVMADGYES--FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET 106
L + +GY S FFS + R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 LAIIEGYNSYSFFS------RNRSGYSGVATFCK--------DSATPMAAEEGLSGLLAT 107
Query: 107 SGSKI--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDT 155
+ +++F+++EL +DSEGR ++T H L NVY P AD+
Sbjct: 108 HNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKP 167
Query: 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWF 213
R+ FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W
Sbjct: 168 ERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWM 227
Query: 214 RSMLVESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
+L G GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 228 DGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL----- 282
Query: 267 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
+ ++ID + + + GSDH PV L V
Sbjct: 283 -----------------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SV 315
Query: 327 PEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 357
+P P L +R+LP G Q ++ L+
Sbjct: 316 SSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 346
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 465 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 514
>gi|393240753|gb|EJD48278.1| DNase I-like protein [Auricularia delicata TFB-10046 SS5]
Length = 611
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 167/354 (47%), Gaps = 78/354 (22%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+IVT+N+NG+R + GS R +LD A I+CFQE K RQ+L + DGY
Sbjct: 1 MRIVTWNINGVRTLPKYHPWNGLGSWRAILDGIGASIVCFQEMKTTRQQLDRATALPDGY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------- 108
+SFFS + GYSGVA + + A+P AEEG + L+ +
Sbjct: 61 DSFFSFPMQ----KGGYSGVAVYTKRAD-------AVPFKAEEGLSARLQPTKAPLSAEE 109
Query: 109 --SKIMEGLEDFSKD-----------ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
S+ ++D + + ++L++D EGR ++ D G F+L N+Y P S+
Sbjct: 110 RVSRAYPDIDDLAAEFIPNDDGSVPQDVLELDGEGRALVLDFGLFVLVNLYCPAETSD-- 167
Query: 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFR 210
RI FK F +L +R L +GR I VVGD+NI +D CD F + E R
Sbjct: 168 ARIPFKANFHRLLGERLRILRAEGRGIIVVGDINICSTPLDHCDFTLPSTHETFFERETR 227
Query: 211 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+W R +L E G F DV R HP R+ YTCW + A NYGTRID+ILC
Sbjct: 228 VWMRDLL-EPVGPFVDVVRRFHPGRKGMYTCWNTRINARDSNYGTRIDYILCTS------ 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCL 323
G P KGG + ++GSDH PVY+ L
Sbjct: 281 ---------------------------GLLPWMKGGDIQASVKGSDHCPVYVDL 307
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 569 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 616
L P C H +P + R K GP G+ F++C+ GP +P+
Sbjct: 523 LAPVKPPCCDVHGKPTLRRTTTKQGPNKGKVFYICSMPLGPGYDAGRGKRLREEVDPQYK 582
Query: 617 CGYFKW 622
C YFKW
Sbjct: 583 CDYFKW 588
>gi|109499818|ref|XP_223499.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Rattus
norvegicus]
gi|109500734|ref|XP_001059968.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Rattus
norvegicus]
Length = 516
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 189/389 (48%), Gaps = 73/389 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+ + G +LR +L DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRPLQGLGCEVTSNCPTALRHILRELDADIVCLQETKVSRDALTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + PVAAEEG +G T +
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSVTPVAAEEGLSGQFATLSGHV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+ +F++++L +DSEGR ++T H L NVY P A + R+ F
Sbjct: 110 GCYGNMNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML- 217
K++F+ +LQ R E LL G + ++GD+N A ID C+AG F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLS 229
Query: 218 ---VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
+G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 230 NLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL---------- 279
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
D++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GNRDLIIDTLQ---------DAFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILGFLVPCE 346
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 39/52 (75%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R+VKKPGP GR F+ CA+ +GP ++ ++C +F W+
Sbjct: 462 SPMPLCGGHREPCVMRIVKKPGPNLGRHFYTCAKPQGPPNDLSSSCNFFLWS 513
>gi|149047282|gb|EDL99951.1| rCG36041 [Rattus norvegicus]
Length = 485
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 189/389 (48%), Gaps = 73/389 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+ + G +LR +L DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRPLQGLGCEVTSNCPTALRHILRELDADIVCLQETKVSRDALTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + PVAAEEG +G T +
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSVTPVAAEEGLSGQFATLSGHV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+ +F++++L +DSEGR ++T H L NVY P A + R+ F
Sbjct: 110 GCYGNMNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML- 217
K++F+ +LQ R E LL G + ++GD+N A ID C+AG F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLS 229
Query: 218 ---VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
+G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 230 NLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL---------- 279
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
D++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GNRDLIIDTLQ---------DAFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 332 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILGFLVPCE 346
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGP 594
+ +PLC GH+EPCV R+VKKPGP
Sbjct: 462 SPMPLCGGHREPCVMRIVKKPGP 484
>gi|405960123|gb|EKC26070.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Crassostrea gigas]
Length = 527
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 184/403 (45%), Gaps = 97/403 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T+N+NG+R + L +L DS DAD+IC QETK+ R L + +GY S+FS
Sbjct: 1 MKILTWNINGIRASKIK---LSELFDSLDADVICLQETKVTRDMLDEPTAIVEGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG------ 114
+ K R+GYSGVATFC+ A PV AEEG L +EG
Sbjct: 58 FS----KKRSGYSGVATFCKAS--------ATPVEAEEGLYKELNPK----LEGKVGHYG 101
Query: 115 -LEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQF 164
+ +FS DEL +D+EGR VIT H + NVY PR D + R+ +KL+F
Sbjct: 102 DVSEFSSDELEALDAEGRAVITKHKIRKHDGVEAELAIINVYCPRVDPDREDRLLYKLRF 161
Query: 165 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-DFAKNEFRIWFRSML------ 217
F +LQ R E LL G + V+GD+N+ +IDR + R+W +
Sbjct: 162 FALLQTRAEALLQSGCNVIVLGDMNVKHKSIDRSEEDEVGTVTTPSRVWVNQFVWDKDQD 221
Query: 218 -----VES------------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
VE+ GG F D FR +P++ AYT W + T A + NYG R+D+I
Sbjct: 222 PSIAAVENKEDFAGTTSSVRGGLFVDSFRYFYPDQTGAYTNWCTLTSARETNYGRRLDYI 281
Query: 261 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV- 319
+ + +C IL D +EGSDH PV
Sbjct: 282 FT------------NVELAQSDLKDCVILAD-------------------VEGSDHCPVK 310
Query: 320 --YMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
YM I P L ++++P G Q L S MKRE
Sbjct: 311 AEYM----AEFISAEKCPPLCTKHMPEFCGKQIKLSSFFMKRE 349
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 40/53 (75%)
Query: 576 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 628
LCKGH+E CV R VKKPGP G++FFVCAR EG ++NPEA C +FKW K K
Sbjct: 475 LCKGHQEACVLRTVKKPGPNKGKQFFVCARGEGHSTNPEARCDFFKWVDYKKK 527
>gi|315047122|ref|XP_003172936.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
gi|311343322|gb|EFR02525.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
Length = 604
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 177/683 (25%), Positives = 284/683 (41%), Gaps = 149/683 (21%)
Query: 1 MKIVTYNVNGLRQRVS--------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
+++ T+NVNG+R S FG++ D +ADI+ FQE K++R++L+ D+V+
Sbjct: 3 LRLTTWNVNGIRNPFSYEPWRGNRTFGAM---FDILEADIVVFQEAKIQRKDLQDDMVLV 59
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-------- 104
G++ +FS R + GYSGV + R S++ A + AEEG TG L
Sbjct: 60 PGWDCYFSLPRQ----KKGYSGVVIYTR------SSKCAA-IRAEEGITGTLCPPNSSTP 108
Query: 105 --------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
+ G +E +E+ S+ + +DSEGRC+I + F+L VY P + D
Sbjct: 109 FRQLTASEQIGGYPSVEQMEELSEVDPTTLDSEGRCLIVEFPAFVLIGVYCPA--NRDES 166
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN--------- 207
R F+L F +L+ R L+ G+R+ + GDLNI+PAAID A KN
Sbjct: 167 RDGFRLGFLSLLEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVS 226
Query: 208 -EFRIWFRSML-----------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 255
R F ++ +E+ D+ R HP R YTCW A NYG+
Sbjct: 227 SPARRLFNGLVRRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGS 286
Query: 256 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315
RID+ILC+ D++ FV ++ E L GSD
Sbjct: 287 RIDYILCS-------DDIRPW-FVESNIQEG------------------------LMGSD 314
Query: 316 HAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSL 374
H PVY + + T R + I+ + T +++ + + SG L
Sbjct: 315 HCPVYASISD--------TVPFEGRDVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKL 366
Query: 375 PAESNSTGDTEDCSEN---------VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE 425
E + + +D N + S+ +G+ ++ E +K+
Sbjct: 367 IPEFDRRRNIKDMFRNHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALE---SKSPS 423
Query: 426 NCRDSANVASHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 484
+ + SHS Q S + P ++R +S GQ +L FF
Sbjct: 424 VTMNPPSKRSHSKAAQTPPSKRLKP----KSRPAGARSN-GQQTLAGFFKSER------- 471
Query: 485 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQD 543
T +++ N+ T + QE E+ ++ +T S E G + + S D
Sbjct: 472 ---TSRAVSEENATTSSDSPQEAQTEA-----RLTLTSGLSSTMERGGSLPTRAASASPD 523
Query: 544 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 603
F E W ++ + +P C+GH E C++ V KKPG GR F++C
Sbjct: 524 SSVASLFSQTE-------SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWIC 574
Query: 604 ARAEGPASNPEAN----CGYFKW 622
+R GP+ + E+ C F W
Sbjct: 575 SRPLGPSGDKESGTPWRCPTFIW 597
>gi|410988667|ref|XP_004000602.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Felis
catus]
Length = 514
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/388 (31%), Positives = 190/388 (48%), Gaps = 74/388 (19%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSL--RKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++NVNG+R + S + ++ ++LD DADI+CFQETK+ R L L
Sbjct: 2 LRVVSWNVNGIRSPLQGMIYEEPSNYAAMVVGRILDKLDADIVCFQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S + + R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 ITEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGLLATQKGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKILTLINVYCPHADPGKPERLA 169
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +L+ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYSLLKIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 218 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
G G F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SSLGCQTGSHVGPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL--------- 280
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 330
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 331 QHSTPSLASRYLPIIRGVQQTLVSVLMK 358
P L +R+LP G Q + L++
Sbjct: 318 AKECPPLCTRFLPEFAGTQLKIRRFLVR 345
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 573 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
S+PLC+GH+EPCV R VKKPGP GR F+VCAR +GP ++P + C +F W+
Sbjct: 461 SMPLCRGHREPCVRRTVKKPGPNLGRHFYVCARPQGPPTDPSSRCNFFLWS 511
>gi|119493288|ref|XP_001263834.1| DNA lyase, putative [Neosartorya fischeri NRRL 181]
gi|119411994|gb|EAW21937.1| DNA lyase, putative [Neosartorya fischeri NRRL 181]
Length = 622
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 169/663 (25%), Positives = 268/663 (40%), Gaps = 126/663 (19%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + D +ADI+ FQETK++R++L+ D+V+ G++ +FS +T + GYSGV +
Sbjct: 19 TFESMFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPKT----KKGYSGVVIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG G+L + G +E L + D
Sbjct: 75 R-------NATCCPIRAEEGLAGVLCPPNSSVSFRDLPEEQQVGGYPTIEQLSELEVDAA 127
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+F
Sbjct: 128 T-LDSEGRCVILEFPAFVLLGIYSPA--NRDESRDNFRHSFIDLMDARIRNLVAMGKRVF 184
Query: 184 VVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------G 222
V GDLNIA ID A K +EF R F +L +
Sbjct: 185 VTGDLNIAKGEIDAAHATEAIRKGTVTEDEFISVPARRVFNQLLSDGRVIGQRDEGREIP 244
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 282
FD+ RS HP RR YTCW A NYG+RID++LC+ D+Q F +
Sbjct: 245 VLFDICRSFHPGRRGMYTCWEQRIIARPGNYGSRIDYVLCS-------LDMQDW-FSDSN 296
Query: 283 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 342
+ E L GSDH PVY +V + + L
Sbjct: 297 IQEG------------------------LMGSDHCPVYAVFKDVVRLGEKEVSILDIMNP 332
Query: 343 PII----RGVQQTLVSVLMK---REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL 395
P + + Q+ L+ R + + K +S++ T + R
Sbjct: 333 PGMFKDGQRQQEYSTKYLLPTSGRLIPEFDKRRSIKDMFSRKSSTNAQTPTTNPPALRRF 392
Query: 396 NNYCDSGILQGVYCSSSNQE-SEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 454
+ + V S+++Q + + T+TI+ R + S P V R
Sbjct: 393 ASTQGTETPTAVSESTTSQSVAVSDSTQTIQIVRKRSQ----------KSETGFPVSVKR 442
Query: 455 AR----KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 510
++ + + S GQ +LK FF +++ + +I S +V+ T+ S + P
Sbjct: 443 SKSGSAQPSAPSSAGQRTLKGFFKPKTDPAG--QATIARDSASVSTVPTNQSAAFPRKPT 500
Query: 511 SHHHSNKIPVTDYSCSVHELHG------VNSSVCSHDQDEKKGKRFLDKERNNVALLEWR 564
+ + + L G ++ S D+ KE +W
Sbjct: 501 PVTEPTALEAIPTAPAGEALPGEQPNSATTTTPASSQNDDTVHDPIASKE-------DWS 553
Query: 565 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 620
++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N E C F
Sbjct: 554 KL--FTKRPVPRCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTF 611
Query: 621 KWA 623
WA
Sbjct: 612 IWA 614
>gi|225558763|gb|EEH07047.1| DNA lyase Apn2 [Ajellomyces capsulatus G186AR]
Length = 636
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 186/693 (26%), Positives = 284/693 (40%), Gaps = 135/693 (19%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ +ADI+ FQETK++R++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALEADIVIFQETKIQRKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL--LETSGSKIME 113
+ FFS K + GYSGV + R + P+ AEEG TG+ L TSGS +
Sbjct: 62 DCFFSLP----KYKKGYSGVVIYTR-------NSICCPIRAEEGITGILCLPTSGSNLSS 110
Query: 114 --GLEDFSKD-----------------ELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
D ++ + +DSEGRC+I + F+L VY P + D
Sbjct: 111 PTSFRDLPEEAQIGGYPTAEQLALSDVDAATLDSEGRCMILEFPAFVLIGVYCPA--NRD 168
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDF 204
R F+ F +VL R L G+R+ V GDLNI+ + ID A +F
Sbjct: 169 ETRDGFRTGFVNVLDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGVRKGTLTDSEF 228
Query: 205 AKNEFRIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFN 252
+ R F + LV+ G D+ R HP+R YTCW A N
Sbjct: 229 VSSPVRRIF-NQLVDGGKVIGDRDHGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGN 287
Query: 253 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 312
YG RID++LC +Q F ++ E L
Sbjct: 288 YGARIDYVLC-------DRSMQDW-FSASNIQE------------------------GLM 315
Query: 313 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 372
GSDH PVY L + + S + L I+ + T + KRE + + SG
Sbjct: 316 GSDHCPVYAELKD-----KVSLDGIEVNMLDILN-PKGTFENGQRKREYSP-ADTLPLSG 368
Query: 373 SLPAESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSA 431
L E +D RS N Y SG GV S Q++ + + + +
Sbjct: 369 RLIPEFCQRRSIKDMLFQ-QRSQNGYQGSGNAAGGVGIPISAQKASSDISLSAIGRSNIP 427
Query: 432 NVASHSTITQGSSNHIS-PFHVDRAR----KKAKKSQ--------LGQLSLKSFFHKRSN 478
+ +S T N P D K+ K+S+ GQ +LK FF ++
Sbjct: 428 SPSSTPIATSAEPNTPKRPQKADDGTTSRPKRLKRSESSTTTTKAKGQKTLKGFFGPKT- 486
Query: 479 VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC 538
+ T S + N + +S + E + K P C H+ +G S
Sbjct: 487 -----TSCTTVASADDENDHSKSSATAEGGSPQKGTAIKPPCPSGDCCDHQENGCQQSQT 541
Query: 539 ----SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGP 594
++D+D+ R D N + W ++ + P C GH EPC++ V KK G
Sbjct: 542 AGPPAYDRDDDNSGRVHDPIANKES---WSKL--FTKKPPPKCDGHDEPCISLVTKKAGI 596
Query: 595 TFGRRFFVCARAEGPA----SNPEANCGYFKWA 623
GR F++C+R GP + + C F W+
Sbjct: 597 NRGRSFWICSRPLGPTGIKKTGDQWRCDTFIWS 629
>gi|325180868|emb|CCA15278.1| DNA(apurinic or apyrimidinic site) lyase putative [Albugo laibachii
Nc14]
Length = 475
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/352 (35%), Positives = 183/352 (51%), Gaps = 47/352 (13%)
Query: 2 KIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
KIV++NVNGLR + + L L + A IICFQETKL R EL +L +++F+S
Sbjct: 5 KIVSWNVNGLRAILQRDKVKLNDFLHALQASIICFQETKLTRSELDEELACPKDFDAFYS 64
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSKIMEGLED 117
R R GYSGV TF R P +AAEEG TG+ +T G M G +
Sbjct: 65 HCRV----RNGYSGVVTFVRSDLP--------TIAAEEGLTGMWTRKDTIGHVNM-GDAE 111
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
L +++SEGR VITDHG FIL NVY P +E+ R+++K+ F +L +R + L
Sbjct: 112 IPSQMLSELESEGRSVITDHGAFILINVYCPAIRNEE--RLEYKIAFHELLTRRIQTLRK 169
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGP----DFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+R+ +VGDLN+A ID C+ +F + R W L+ S D++R +P
Sbjct: 170 ASKRVVLVGDLNVASKRIDHCEPKASEFGEFEAHPCRKWLHR-LISSPAPLRDIYRKLYP 228
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
++++A+TCW + T A + NYGTRID+IL Q L +F + E
Sbjct: 229 DKKKAFTCWNTATMARKNNYGTRIDYILVDEKL--QDSVLSCRSFAFKSILE-------- 278
Query: 294 RWKPGNAPRWKGGMSTRLE----GSDHAPVYMCLGEVPEIPQHSTPSLASRY 341
+W ++ RL+ GSDH PV+ + + + TP+LAS++
Sbjct: 279 KWL---------TLAIRLDPERLGSDHCPVFAEIDILFQTACTLTPALASKH 321
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 541 DQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 600
D+DE KR D+ +W+++ + P+C + +P VAR V K GRRF
Sbjct: 395 DRDEIPKKRKQDQT-------DWKKVLTGQISPTPMCYCN-QPSVARAVVKKNENCGRRF 446
Query: 601 FVCARAEGPASNPEANCGYFKWAFSKSK 628
+VC + G A +P A C YF+WA S K
Sbjct: 447 YVCTKPAGEAGDPNARCNYFQWANSSRK 474
>gi|152002960|gb|ABS19616.1| DNA lyase [Coccidioides immitis]
Length = 625
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 174/691 (25%), Positives = 276/691 (39%), Gaps = 144/691 (20%)
Query: 1 MKIVTYNVNGLR----------QRVSQF--------------GSLRKLLDSFDADIICFQ 36
+++ T+NVNG+R R + F S ++ D + DII FQ
Sbjct: 3 LRLTTWNVNGIRFGIRARLLCIYRTNDFLFRNPFSYQPWRENKSFERMFDILEGDIIVFQ 62
Query: 37 ETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAA 96
ETK+++++L+ D+V+ G++ FFS R + GYSGV + R + P+ A
Sbjct: 63 ETKIQKRDLRDDMVLIPGWDCFFSLPRH----KKGYSGVVIYTRCSA-------CSPIRA 111
Query: 97 EEGFTGLLETSGSKI----------MEGLEDFSKDELLKID-----SEGRCVITDHGHFI 141
EEG TG L + GS + + G + ELL ID SEGRCVI + F+
Sbjct: 112 EEGLTGTLSSPGSPLPYRELPEDDQIGGYPTPEQLELLPIDPVTIDSEGRCVILEFPAFV 171
Query: 142 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC--- 198
L VY P + D R F+ F +VL R L G+R+ ++GD+NI+ ID
Sbjct: 172 LLGVYCPA--NRDETRDVFRAAFLNVLDMRVRNLTAMGKRVVLMGDMNISREVIDSAHVI 229
Query: 199 -------DAGPDFAKNEFRIWFRSMLVESGGS----------FFDVFRSKHPERREAYTC 241
+F + R F + LV GG+ DV R HP+R YTC
Sbjct: 230 EAIRKGKTTETEFLSSPSRRLF-NQLVGGGGARAKDSEDTPVLLDVCRKFHPDRLGMYTC 288
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W A NYG RID++LC+ +D + W
Sbjct: 289 WEQRVNARPGNYGARIDYVLCS--------------------------VDMEDWFT---- 318
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREV 361
+ + L GSDH PVY + + +T L P G+ + + R+
Sbjct: 319 --ESNIQEGLMGSDHCPVYGIINDTVSCRNMNTNILDIMNPP---GIFRAGI-----RKQ 368
Query: 362 AKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFT 421
S SG L E + +D + + + + L S +
Sbjct: 369 PLTSSSLPLSGRLIPEFHRRRSLKDMFQTASGASDRMTNQLPLASQLSISCDFHEPNSSV 428
Query: 422 KTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK--- 475
++ ++++ + N + RA+K + GQ +L SF +
Sbjct: 429 SNLKKEEKDTSISNKGQPKRALENWTALSPAKRAKKVGNTTSTAAKGQQTLASFVKQSRP 488
Query: 476 RSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNS 535
R + ++ S LNV + + + + + PES + N S S++ + ++
Sbjct: 489 RQTFTLEEPRS---EILNVPDEIKEHTGNVRASPESSYLDN-------SSSIYLMESPHT 538
Query: 536 SVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPT 595
+ G+R + + + A L + + P C+GH EPC+ V KKPGP
Sbjct: 539 PT----DPTEVGERAISSAKESWAKL-------FTKKAPPRCEGHDEPCILLVTKKPGPN 587
Query: 596 FGRRFFVCARAEGPASNPEAN----CGYFKW 622
GR F++C R GP+ N E C F W
Sbjct: 588 CGRSFWICPRPLGPSGNKEIGTPWRCSTFIW 618
>gi|296804272|ref|XP_002842988.1| ap endonuclease [Arthroderma otae CBS 113480]
gi|238845590|gb|EEQ35252.1| ap endonuclease [Arthroderma otae CBS 113480]
Length = 574
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 166/649 (25%), Positives = 268/649 (41%), Gaps = 132/649 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +AD++ FQE K++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 1 MFDILEADVVIFQEAKIQRKDLQDDMVLVPGWDCYFSLPRQ----KKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 54 ---SSKCAA-IRAEEGITGTLCPPNSSTQFRHLPASEQIGGYPTIEQMEELSEIDPVALD 109
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRC+I + F+L VY P + D R F+L F ++L R L+ G+R+ + GD
Sbjct: 110 SEGRCLILEFPAFVLIGVYCPA--NRDESRDGFRLGFLNILDARVRNLIKMGKRVVLTGD 167
Query: 188 LNIAPAAIDRCDAGP----------DFAKNEFRIWFRSML-----------VESGGSFFD 226
LNI+PA ID A ++ + R F +++ VE+ D
Sbjct: 168 LNISPAPIDSAPATERIRKSAETEEEYISSPARCLFNTLVRRVGSTGDADNVETPPVLRD 227
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+ R HP R YTCW A NYG+RID+ILC+ D H FV ++ E
Sbjct: 228 LCREFHPHRTGMYTCWEQRVNARPGNYGSRIDYILCS--------DDIRHWFVESNIQEG 279
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 346
L GSDH PVY +G+ + L I+
Sbjct: 280 ------------------------LMGSDHCPVYASIGDRVRLDGKDV-----HILDIMN 310
Query: 347 GVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS-LNNYCDSGILQ 405
+ + R V + SG + E + + +D + S N+
Sbjct: 311 PIGSFEDGIEQPRPV--KISPLPLSGKMIPEFDRRRNIKDMFKKHSLSRTNSEIKVSAET 368
Query: 406 GVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL- 464
Y S +S + +EN + + G +SP + + + S+
Sbjct: 369 DTYTGSETSDSGSQSKIAMENKNTPLTMNPPTKRGHGKVAQVSPSKRLKQKSRPVGSRSN 428
Query: 465 GQLSLKSFF--HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 522
GQ +L FF + S V ++N +++ S P+ H + TD
Sbjct: 429 GQQTLAGFFKSERTSRVVGEENATVSTIS-----------------PQGSHAETQPNPTD 471
Query: 523 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL-----EWRRIQQLMETSIPLC 577
+ E N +V + + K F+D + VA W ++ + +P C
Sbjct: 472 EPSATAE---ANDTVPT-----ETTKTFVD---DYVAFSCSPTESWSKV--FTKKPVPKC 518
Query: 578 KGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
+GH E C++ V KKPG GR F++C+R GP+ + E C F W
Sbjct: 519 EGHDEDCISLVTKKPGMNCGRSFWICSRPLGPSGDKETGTPWRCPTFIW 567
>gi|298706356|emb|CBJ29365.1| potential endonuclease [Ectocarpus siliculosus]
Length = 696
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 163/333 (48%), Gaps = 56/333 (16%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQEL-KSDLVMADGYESFFS 60
+I+T+N+NGLR+ + G +++LLD F+ADI+CFQE K+ R L + +L A GY FF+
Sbjct: 25 RILTWNINGLRKVAASHGGVQQLLDQFNADIVCFQEIKITRAGLVEHELARAQGYHGFFN 84
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ K YSGVATF R +S + L G + + GS + E S
Sbjct: 85 HCKLPRK--VSYSGVATFVRSESGLKT----LASTTSLGDSAFFGSPGSFVGE--RRLSP 136
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---------RADSEDTVRIQFKLQFFHVLQKR 171
D L +DSEGR ++TDHGHF+LFNVY P + +ED R FK F L+ R
Sbjct: 137 DRLAALDSEGRVLVTDHGHFVLFNVYAPCVSSSSDDEKEKTED--RRAFKRDFLATLEAR 194
Query: 172 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML---VESGGSFFD 226
+ +GR + +VGDLN + +D D F + + W R ML D
Sbjct: 195 IFEIRSRGRGVVLVGDLNACASQLDHGFTMTDSEFYASNWSKWIRGMLGLGSPEPPRLVD 254
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
FR HP+R+ A+TCW + TGA NYGTRID+I+ +F + C
Sbjct: 255 CFRHLHPDRKSAFTCWNTQTGARDNNYGTRIDYIIAG------------TDFADRALRAC 302
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 319
DI+ D+ GSDH PV
Sbjct: 303 DIMPDFL-------------------GSDHCPV 316
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 573 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP-ASNPEANCGYFKW 622
S P C+ H EP + R V KPGP RRF+ CAR+ G ++ A C +F+W
Sbjct: 620 SAPTCE-HGEPSIQRTVLKPGPNHNRRFYTCARSAGNWPTDRNARCTFFQW 669
>gi|393221878|gb|EJD07362.1| DNase I-like protein [Fomitiporia mediterranea MF3/22]
Length = 669
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 192/724 (26%), Positives = 283/724 (39%), Gaps = 174/724 (24%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRK---LLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+++T+N+NG+R + + +L+ +L+ ADIICFQE K RQ + + + + Y
Sbjct: 1 MRLLTWNINGIRTLPQYHPWNTLKSGDGILNELGADIICFQEVKSTRQTIDKSVALPESY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
++FFS + GYSGV+ + + +P+ AEEG +G L++ +
Sbjct: 61 DAFFSFPAI----KGGYSGVSVCTK-------SSRVVPLKAEEGISGRLQSGLKPPLSAE 109
Query: 116 EDFSK------------DE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
E S+ DE L+++D EGR ++ D G F+L NVY P S+
Sbjct: 110 ERISQVIPDAHEMVLLEDEASKTHMDLIELDKEGRALMLDFGLFVLINVYCPNETSD--A 167
Query: 157 RIQFKLQFFHVLQKRWEFLL-CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----R 210
R+ +K+ F +LQ+R L R + VVGD+N+ A ID CD K EF R
Sbjct: 168 RLPYKMNFHLLLQERVRLLTEVDKREVIVVGDINVCAAPIDHCDGELPSNKEEFWVHPAR 227
Query: 211 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ- 269
WF L G +D+ R+ PER+ YTCW A NYGTRID+ L L
Sbjct: 228 KWFHEWL-HPIGPMYDIVRNCWPERKGMYTCWNQKIDARTTNYGTRIDYFLLTKGLLPWF 286
Query: 270 KH-DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL----- 323
KH D+Q+H ++GSDH PVY+ L
Sbjct: 287 KHGDIQAH----------------------------------VKGSDHCPVYIDLHDQIT 312
Query: 324 ---GEVPEIP--------QHSTPSLASRYLPIIRGVQQTLVSVLMKREVA---------- 362
G+ + + P LA+++ G QQ L S K+
Sbjct: 313 DEGGDTLYLKDMLKMNGEKRDPPRLATKFWVEYSGKQQVLSSFFGKKAATASESDLAIAS 372
Query: 363 ------KQGKSCKFSGSLPAESNSTGDTEDCSENVDRS--LNNYCDSGILQGVYCSSSNQ 414
GKS + S PA ++S E S + ++ +Y I
Sbjct: 373 TVSIRPASGKSSTVA-STPATTDSGKTREIESREISKADESKSYNQEAIFPPPVPEEKIA 431
Query: 415 ESEGEFTKTIENCRD---------SANVASHSTI------TQGSSNHISPFHVDRARK-- 457
S TI + + SA VA+ + Q SN+ P + K
Sbjct: 432 RSSTSSNLTIISSTNDPHSNGSLSSATVAAEAAPPLKRKKMQADSNY--PAQAPKKSKKG 489
Query: 458 ------KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPES 511
K K+S Q+ L SFF ++ + S D +EE P
Sbjct: 490 NSAPKLKGKESTTAQMKLSSFFSGPTS----------------SQSQADVDDKEEESPIR 533
Query: 512 HHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLME 571
S I V D + + V S V G +K N+ W + +E
Sbjct: 534 SQKSEVIDV-DALLNDSDALTVQSEVQLSPPVTVPGSSRTEKGNNSHT---WSTLFARIE 589
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGY 619
P C H E C V KPGP G+ FF+CAR GP N + C +
Sbjct: 590 P--PKCVVHGEACREFTVNKPGPNKGKAFFICARPVGPGYDAGKDRRLREEVNSQYRCNF 647
Query: 620 FKWA 623
FKW+
Sbjct: 648 FKWS 651
>gi|146323277|ref|XP_754988.2| DNA lyase Apn2 [Aspergillus fumigatus Af293]
gi|129558370|gb|EAL92950.2| DNA lyase Apn2 [Aspergillus fumigatus Af293]
gi|159128003|gb|EDP53118.1| DNA lyase Apn2 [Aspergillus fumigatus A1163]
Length = 648
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 183/709 (25%), Positives = 276/709 (38%), Gaps = 157/709 (22%)
Query: 1 MKIVTYNVNGLRQRVSQ----------------FGSL-------RKLLDSFDADIICFQE 37
+I T+NVNG+R S SL + + D +ADI+ FQE
Sbjct: 3 FRITTWNVNGIRNPFSYEPWRGNRTFEVDLPKVLHSLNERLIIEQSMFDILEADIVVFQE 62
Query: 38 TKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAE 97
TK++R++L+ D+V+ G++ +FS +T + GYSGV + R P+ AE
Sbjct: 63 TKIQRKDLRDDMVLVPGWDCYFSLPKT----KKGYSGVVIYTR-------NATCCPIRAE 111
Query: 98 EGFTGLL----------------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFI 141
EG TG+L + G ++ L + D +DSEGRCVI + F+
Sbjct: 112 EGLTGVLCPPNSSVSFRDLPEEQQIGGYPTIKQLSELEIDA-ATLDSEGRCVILEFPAFV 170
Query: 142 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG 201
L +Y P + D R F+ F ++ R L+ G+R+FV GDLNIA +D A
Sbjct: 171 LLGIYSPA--NRDESRDNFRHSFIDLMDARIRNLVAMGKRVFVTGDLNIAKGELDAAHAT 228
Query: 202 PDFAK-----NEF-----RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYT 240
K +EF R F +L + FD+ RS HP RR YT
Sbjct: 229 EAIRKGAITEDEFISAPARRVFNQLLSDGRVIGQRDEGRESPVLFDICRSFHPGRRGMYT 288
Query: 241 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 300
CW A NYG RID++LC+ D+Q F ++ E
Sbjct: 289 CWEQRIIARPGNYGARIDYVLCS-------LDMQDW-FSDSNIQEG-------------- 326
Query: 301 PRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
L GSDH PVY +V + L P + K
Sbjct: 327 ----------LMGSDHCPVYAVFKDVVRLGDKEVNILDIMNPP-----------GMFKDG 365
Query: 361 VAKQGKSCKF----SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQES 416
+Q + K+ SG L E + +D S N + + S E+
Sbjct: 366 QRQQEYTTKYLLPTSGRLIPEFDKRRSIKDMFSR-KPSTNAQTPATNPPALRRFGSTHET 424
Query: 417 EGEFTKTIENCRDSANVASHSTITQ-------GSSNHISPFHVDRAR----KKAKKSQLG 465
E T E+ + S ST T+ S SP R++ + + S G
Sbjct: 425 ETP-TAVSESTAGRSVAVSDSTQTKQIVRKRSQKSEAGSPVSFKRSKSGSAQPSAPSSAG 483
Query: 466 QLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSC 525
Q +LK FF +++ + +IT S +V+ T+ S++ PVT+ +
Sbjct: 484 QRTLKGFFKPKTDPAG--QATITQDSASVSTVPTNQSVA--------FPRESAPVTELTA 533
Query: 526 SVHELHGVNSSVCSHDQDEKKGKRFLDKERNN-------VALLEWRRIQQLMETSIPLCK 578
+Q RN+ + +W ++ + P C+
Sbjct: 534 LEETRTAPAGEALPGEQPNSTTTTTPASSRNDDTVHDPIASKEDWSKL--FTKKPAPKCE 591
Query: 579 GHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 592 GHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 640
>gi|320036533|gb|EFW18472.1| DNA lyase [Coccidioides posadasii str. Silveira]
Length = 600
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 189/685 (27%), Positives = 274/685 (40%), Gaps = 158/685 (23%)
Query: 1 MKIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++ T+NVNG+R S S + + D +ADII QE K++R++L+ D+V+ G+
Sbjct: 3 FRLTTWNVNGIRNPFSYEPWRGTQSFQGMFDLLEADIIVLQELKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----ETSGSKI 111
+ FFS K + GYSGVA + R P+ AEEG TG+L TS +
Sbjct: 63 DCFFSLP----KYKKGYSGVAIYTR-------NATCSPIYAEEGVTGILCPPNSTSSYRE 111
Query: 112 M---EGLEDFSKDELLK--------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ E + + DE L +DSEGRCVI + F+L VY P + D R F
Sbjct: 112 LPESEQIGGYPTDEQLSTSEVSAETLDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFR 210
+L F + L R L+ G+R+ V GDLNI+ AID A +F + R
Sbjct: 170 RLGFLNALDHRIRNLIFLGKRVVVAGDLNISRDAIDSAHALEQIRKSRLTTDEFLSSPAR 229
Query: 211 IWFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 258
I F + LVE G +D+ RS P R YTCW A N+G RID
Sbjct: 230 IIF-NRLVEGGRVSHIEGVDKKDAVLWDMCRSFFPARSGMYTCWEQRINARPGNFGARID 288
Query: 259 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 318
+ILC+ +D K W + L GSDH P
Sbjct: 289 YILCS--------------------------LDMKDWMS------IADIQEGLMGSDHCP 316
Query: 319 VYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL---MKREVAKQGKS---CKFSG 372
VY E + + G Q V+++ + E A+ S SG
Sbjct: 317 VYAIFKENVD----------------LHGDQIDFVNLMNPSVDFEAAENSLSRSHLPLSG 360
Query: 373 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 432
L E N + D + SS+ S GE + + N
Sbjct: 361 RLIPEFNRRRNIRD------------------MFLRQSSTQNLSPGEINQNATSMSSMTN 402
Query: 433 VASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFH------KRSNVSHDD 483
++ S+ I R +K+ L Q S++ FF+ K+SN++ D
Sbjct: 403 KGRPISLDLERSHEIDERDPKRRKKEPIAGVLPTTSQKSIRGFFNPRQPRLKQSNLAK-D 461
Query: 484 NNSITDTSLN--VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHD 541
+I D+ N N+S S P+++ P T + + V S + +
Sbjct: 462 CEAINDSVPNERKNDSGPGHRTSGISPPDANPDFEADPQTSQESTT--VSAVPSRIVA-- 517
Query: 542 QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 601
D D+E W +I + P C+GH+EPCV V KKPG GR F+
Sbjct: 518 -DINVMSSIPDQE-------SWNKI--FKKRPPPRCEGHEEPCVRLVTKKPGINRGRSFW 567
Query: 602 VCARAEGPASNPEAN----CGYFKW 622
+C R GP+ N E C F W
Sbjct: 568 ICPRPLGPSGNKETGTQWRCPTFIW 592
>gi|325094515|gb|EGC47825.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 636
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 186/698 (26%), Positives = 287/698 (41%), Gaps = 145/698 (20%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ +ADI+ FQETK++R++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALEADIVIFQETKIQRKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL--LETSGSKIME 113
+ FFS K + GYSGV + R + P+ AEEG TG+ L TSGS +
Sbjct: 62 DCFFSLP----KYKKGYSGVVIYTR-------NSICCPIRAEEGITGILCLPTSGSNLSS 110
Query: 114 --GLEDFSKD-----------------ELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
D ++ + +DSEGRC+I + F+L VY P + D
Sbjct: 111 PTSFRDLPEEAQIGGYPTAEQLALSDVDAATLDSEGRCMILEFPAFVLIGVYCPA--NRD 168
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDF 204
R F+ F +VL R L G+R+ V GDLNI+ + ID A +F
Sbjct: 169 ETRDGFRTGFVNVLDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGIRKGTLTDSEF 228
Query: 205 AKNEFRIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFN 252
+ R F + LV+ G D+ R HP+R YTCW A N
Sbjct: 229 VSSPVRRIF-NQLVDGGKVIGDRDDGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGN 287
Query: 253 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 312
YG RID++LC +Q F ++ E L
Sbjct: 288 YGARIDYVLC-------DRSMQDW-FSASNIQE------------------------GLM 315
Query: 313 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 372
GSDH PVY L + + S + L I+ + T + KRE + + SG
Sbjct: 316 GSDHCPVYAELKD-----KVSLDGIEVNMLDILN-PKGTFENGQRKREYSP-ADTLPLSG 368
Query: 373 SLPAESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSA 431
L E +D RS N SG + GV S Q++ + + + +
Sbjct: 369 RLIPEFCQRRSIKDMLFQ-QRSQNGSQGSGNAVSGVAIPISAQKASSDISLSAIG---RS 424
Query: 432 NVASHSTITQGSSNHISPFHVDRAR----------KKAKKSQ--------LGQLSLKSFF 473
N+ S S+ +S P RA+ K+ K+S+ GQ +LK FF
Sbjct: 425 NIPSPSSTPIATSAE--PNTPKRAQKEDDGTTSRPKRLKRSESSTTTTKAKGQKTLKGFF 482
Query: 474 HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGV 533
++ + TD S + N + +S + E + K P + C + +G
Sbjct: 483 GPKT------TSCTTDASADDENDHSKSSATAEGDSPQKGTAIKPPCSSGDCCDPQENGC 536
Query: 534 NSSVC----SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVV 589
S ++D+ R D N + W ++ + P C GH EPC++ V
Sbjct: 537 QQSQTAGPPAYDRHNDNSGRVHDPIANKES---WSKL--FTKKPPPKCDGHDEPCISLVT 591
Query: 590 KKPGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 623
KK G GR F++C+R GP + + C F W+
Sbjct: 592 KKAGINRGRSFWICSRPLGPTGIKKTGDQWRCDTFIWS 629
>gi|115402641|ref|XP_001217397.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
gi|114189243|gb|EAU30943.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
Length = 592
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 169/661 (25%), Positives = 262/661 (39%), Gaps = 138/661 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ FQETK++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 1 MFEILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPRV----KKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------------MEGLEDFSKDEL--LKIDS 128
P+ AEEG TG+L S +E S+ EL +DS
Sbjct: 54 ----NSTCAPIRAEEGLTGVLCPPNSSTPFRDLPEDQQIGGYPAIEQLSQLELDAATLDS 109
Query: 129 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 188
EGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+ V GDL
Sbjct: 110 EGRCVILEFPAFVLLGLYCPA--NRDESRDSFRQSFLDLMDTRLRNLVAMGKRVVVTGDL 167
Query: 189 NIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG-----------GSFFDV 227
NI+ ID+ A DF R F +L E D+
Sbjct: 168 NISAREIDQAPAAEAIRKGTLTEDDFVSAPARRLFNQLLFEGKVLGQRDEGREQPVLHDI 227
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
R HP+R+ YTCW A NYG+RID++LC+
Sbjct: 228 CRMFHPDRKGMYTCWEQRINARPGNYGSRIDYVLCS------------------------ 263
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL----- 342
+D + W + + L GSDH PVY +V +P P +
Sbjct: 264 --LDMRDWIEDS------NIQEGLMGSDHCPVYAIFKDV--VPLDGKPVNIRDIMNPPGV 313
Query: 343 ------------PIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN 390
+I L+ KR K S K S + A +T TE
Sbjct: 314 FANGERKQEYTTKLILPTSGRLIPEFDKRRSIKDMFSRKPSAT--ATKGNTIATEPSP-- 369
Query: 391 VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPF 450
SG Q + E + T T + + A + S I P
Sbjct: 370 ----------SGPQQANAANVCPPEEKPALTPTPSGPQPAQGGARKRS---QRSEPIPPV 416
Query: 451 HVDRARKKAKKSQL-GQLSLKSFFHKRSNVSHDDN---NSITDTSLNVNNSVTDTSLSQE 506
++ + L GQ SLK FF + +V+ D + +D+ + + + +TS ++
Sbjct: 417 KRSKSTPTPIQGALGGQKSLKGFFKPKVSVTEQDKVGPSRGSDSPGLIPDPLPETSSNEP 476
Query: 507 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 566
+ +NKI S + +S ++ + F+D V+ +W ++
Sbjct: 477 DNSADAQSANKIEGNPDSPRKGQPAAPSS---------QENETFIDP---IVSKEDWSKL 524
Query: 567 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
+ + P C+GH+EPC++ KKPG GR F++C R GP+ N E C F W
Sbjct: 525 FS-KKKAAPKCEGHQEPCISLTTKKPGVNCGRSFWICPRPLGPSGNKEKGTQWRCSTFIW 583
Query: 623 A 623
A
Sbjct: 584 A 584
>gi|242813026|ref|XP_002486082.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
gi|218714421|gb|EED13844.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
Length = 642
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 176/668 (26%), Positives = 259/668 (38%), Gaps = 140/668 (20%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
S + D +ADI+ FQETK++R++L+ D+V+ G++ +FS R + GYSGV +
Sbjct: 44 SFNAMFDILEADIVIFQETKIQRKDLRDDMVLVPGWDCYFSLPR----HKKGYSGVVIYT 99
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R E P+ AEEG TGLL + G ME L D D
Sbjct: 100 R-------NETCTPIRAEEGITGLLCSPNSTTPYRHLPDDQQIGGYPSMEQLSDLQVDPA 152
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
+ +D EGRCVI + F+L +Y P A D R F+ F ++L R L+ G+R+
Sbjct: 153 V-LDCEGRCVILEFPAFVLLGLYCPAA--RDETRDDFRQGFINLLDARIRNLVSMGKRVI 209
Query: 184 VVGDLNIAPAAID--------RCDAGPD--FAKNEFRIWFRSMLVESG------------ 221
V GDLNI+ ID R G + F + R F + LVE
Sbjct: 210 VTGDLNISVGEIDSAHLTEAIRKGTGSEDEFVSSPVRRVF-NQLVEGAKVVGQRDPAREV 268
Query: 222 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 281
D+ RS HP RR YTCW + A NYG RID+IL +
Sbjct: 269 PVLHDICRSFHPGRRGMYTCWETRVNARPGNYGARIDYILSS------------------ 310
Query: 282 HVNECDILIDYKRWKPGNAPRW-KGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR 340
+D K W W + + L GSDH PVY + SL
Sbjct: 311 --------LDMKDW-------WSEANIQEGLMGSDHCPVYATFKD--------KISLEGN 347
Query: 341 YLPI--IRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNY 398
+ I I + + +RE + + SG L E +D S
Sbjct: 348 EIDIKDIMNPPGVFKNGIRQREYSTK-DLLPLSGRLIPEFTQRRSIKDMFTRKPSSSLKD 406
Query: 399 CDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA---SHSTITQGSSNHIS------- 448
+ I V S+ E T + E + + + S + SSN +S
Sbjct: 407 SVTPITNVVDEESAPTPPESTITNSAEPFQSPSKPGLYKTQSNASNASSNGLSKRTRKES 466
Query: 449 ----PFHVDRARKK--AKKSQLGQLSLKSFFHKRSNVSHDDNNS---ITDTSLNVNNSVT 499
P ++R K + GQ SL FF + + D N+ I+D L+ +++
Sbjct: 467 APAPPPKRSKSRGKLDTNTTSKGQQSLIGFFKPKKTQDNQDTNTTQEISDRGLDGAFTIS 526
Query: 500 DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVA 559
T + +P H + + + + DE + KE
Sbjct: 527 PTKSISQVLPSPHKPT----------PTSQTTAQDDGSTTESTDETVIDPIVSKE----- 571
Query: 560 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN--- 616
W ++ + + P C+ H+EPC+ KKPG GR F++C+R GP E
Sbjct: 572 --SWSKL--FTKKATPKCEEHQEPCIMLTTKKPGINCGRAFWMCSRPLGPTGQKEKGTQW 627
Query: 617 -CGYFKWA 623
C F WA
Sbjct: 628 RCKTFIWA 635
>gi|259482425|tpe|CBF76897.1| TPA: DNA lyase Apn2 (AFU_orthologue; AFUA_3G06180) [Aspergillus
nidulans FGSC A4]
Length = 612
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 169/671 (25%), Positives = 257/671 (38%), Gaps = 157/671 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 24 TFESMFDILEADIVVVQETKIQRKDLRDDMVLVPGWDCYFSLPKV----KKGYSGVAIYT 79
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG TG L + G +E L D
Sbjct: 80 R-------NATCAPIRAEEGLTGTLCPPNSLVSFRDLPEDQQIGGYPTIEQLSKLKLDAE 132
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+F
Sbjct: 133 -TLDSEGRCVILEFPAFVLIGLYCPA--NRDESRDAFRQNFLDLMDARVRNLVALGKRVF 189
Query: 184 VVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG-----------G 222
V GD+NI+ ID A DF R F +L++
Sbjct: 190 VTGDINISRGEIDAAHAAENIKKGVTTEDDFVSAPARRLFNQLLIDGKVVGDRDEGREQP 249
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 282
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 250 VLFDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS------------------- 290
Query: 283 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 342
+D K W + + L GSDH PVY ++ +
Sbjct: 291 -------LDMKDW------FFDSNIQEGLMGSDHCPVYAVFKDL---------------I 322
Query: 343 PIIRGVQQTLVSVLMKREVAKQGK-----SCKF----SGSLPAESNSTGDTEDCSENVDR 393
P+ G Q ++ ++ V K G+ + KF SG L E + +D
Sbjct: 323 PLNDG-QSHILDIMNPPGVFKNGERQQNYTAKFLLPLSGRLIPEFDRRRSIKDMFMRKPS 381
Query: 394 SLNNYCDSGILQGVYCSSSNQESEGEFTKTIENC-----RDSANVASHSTITQGS----- 443
+ S Q + SN+ES +T N D+ S+ T+ +G+
Sbjct: 382 QPSPKTSSP--QNLTACLSNEESSMT-ARTATNTPKPSDADAPASVSNDTLQKGTVRKRP 438
Query: 444 -SNHISPFHVDR-ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD-----TSLNVNN 496
+ P + A + +GQ +LK FF + + DN D +
Sbjct: 439 VGTEVPPVKRSKSASTQTGAPTIGQSTLKGFFKPKCTLEPKDNMLSKDEGQGPAEFPFIS 498
Query: 497 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERN 556
S D + E+ ++ K P E G V S
Sbjct: 499 SQQDVT---EQTSKAALEPEKAPTPMTPVLSKEDAGFIDPVASKQ--------------- 540
Query: 557 NVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN 616
+W ++ + P C H E C++ KKPGP FGR F++C R GP+ N E
Sbjct: 541 -----DWSKL--FTKKPPPKCGEHGEECISLKTKKPGPNFGRTFWICPRPLGPSGNKEKG 593
Query: 617 ----CGYFKWA 623
C F WA
Sbjct: 594 TEWRCSTFIWA 604
>gi|240275156|gb|EER38671.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 636
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 180/693 (25%), Positives = 281/693 (40%), Gaps = 135/693 (19%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ +ADI+ FQETK++R++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALEADIVIFQETKIQRKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL--LETSGSKIME 113
+ FFS K + GYSGV + R + P+ AEEG TG+ L TSGS +
Sbjct: 62 DCFFSLP----KYKKGYSGVVIYTR-------NSICCPIRAEEGITGILCLPTSGSNLSS 110
Query: 114 --GLEDFSKD-----------------ELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
D ++ + +DSEGRC+I + F+L VY P + D
Sbjct: 111 PTSFRDLPEEAQIGGYPTAEQLALSDVDAATLDSEGRCMILEFPAFVLIGVYCPA--NRD 168
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDF 204
R F+ F +VL R L G+R+ V GDLNI+ + ID A +F
Sbjct: 169 ETRDGFRTGFVNVLDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGVRKGTLTDSEF 228
Query: 205 AKNEFRIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFN 252
+ R F + LV+ G D+ R HP+R YTCW A N
Sbjct: 229 VSSPVRRIF-NQLVDGGKVIGDRDDGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGN 287
Query: 253 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 312
YG RID++LC +Q F ++ E L
Sbjct: 288 YGARIDYVLC-------DRSMQDW-FSASNIQE------------------------GLM 315
Query: 313 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 372
GSDH PVY L + + S + L I+ + T + KRE + + SG
Sbjct: 316 GSDHCPVYAELKD-----KVSLDGIEVNMLDILN-PKGTFENGQRKREYSP-ADTLPLSG 368
Query: 373 SLPAESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSA 431
L E +D RS N SG + GV S Q++ + + + +
Sbjct: 369 RLIPEFCQRRSIKDMLFQ-QRSQNGSQGSGNAVSGVAIPISAQKASSDISLSAIGRSNIP 427
Query: 432 NVASHSTITQGSSNHIS------------PFHVDRARKKAKKSQL-GQLSLKSFFHKRSN 478
+ +S T N P + R+ ++ GQ +LK FF ++
Sbjct: 428 SPSSTPIATSAEPNTPKRPQKEDDGTTSRPKRLKRSESSTTTTKAKGQKTLKGFFGPKT- 486
Query: 479 VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC 538
+ T S + N + +S + E + K P + C + +G S
Sbjct: 487 -----TSCTTVASADDENDHSKSSATAEGDSPQKGTAIKPPCSSGDCCDPQENGCQQSQT 541
Query: 539 ----SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGP 594
++D+D + D N + W ++ + P C GH EPC++ V KK G
Sbjct: 542 AGPPAYDRDNDNSGKVHDPIANKES---WSKL--FTKKPPPKCDGHDEPCISLVTKKAGI 596
Query: 595 TFGRRFFVCARAEGPA----SNPEANCGYFKWA 623
GR F++C+R GP + + C F W+
Sbjct: 597 NRGRSFWICSRPLGPTGIKKTGDQWRCDTFIWS 629
>gi|392864132|gb|EAS35062.2| exodeoxyribonuclease III (xth) [Coccidioides immitis RS]
Length = 600
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 186/694 (26%), Positives = 270/694 (38%), Gaps = 176/694 (25%)
Query: 1 MKIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++ T+NVNG+R S S + + D +ADII QE K++R++L+ D+V+ G+
Sbjct: 3 FRLTTWNVNGIRNPFSYEPWRGTQSFQGMFDLLEADIIVLQELKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----ETSGSKI 111
+ FFS K + GYSGVA + R P+ AEEG TG+L TS +
Sbjct: 63 DCFFSLP----KYKKGYSGVAIYTR-------NATCSPIYAEEGVTGILCPPNSTSSYRE 111
Query: 112 M---EGLEDFSKDELLK--------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ E + + DE L +DSEGRCVI + F+L VY P + D R F
Sbjct: 112 LPESEQIGGYPTDEQLSTSELSAETLDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFR 210
+L F + L R L+ G+R+ V GDLNI+ ID A +F + R
Sbjct: 170 RLGFLNALDHRIRNLISLGKRVVVAGDLNISRDEIDSAHALEQIRKSRLTTDEFLSSPAR 229
Query: 211 IWFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 258
I F + LVE G +D+ RS P R YTCW A N+G RID
Sbjct: 230 IIF-NRLVEGGRVSHIEGVDKKDAVLWDMCRSFFPARSGMYTCWEQRINARPGNFGARID 288
Query: 259 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 318
+ILC+ +D K W + L GSDH P
Sbjct: 289 YILCS--------------------------LDMKDWMS------IADIQEGLMGSDHCP 316
Query: 319 VYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL---MKREVAKQGKS---CKFSG 372
VY E + + G Q V+++ + E A S SG
Sbjct: 317 VYAIFKENVD----------------LHGDQIDFVNLMNPSVDFEAADNSLSRSHLPLSG 360
Query: 373 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 432
L E N + D + SS+ S GE + + N
Sbjct: 361 RLIPEFNRRRNIRD------------------MFLRQSSTQNPSPGEINQNATSMSRMTN 402
Query: 433 VASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFH------KRSNVSHD- 482
++ S+ I R +K+ L Q S++ FF K+SN++ D
Sbjct: 403 KGRPISLDLERSHEIDERDPKRRKKEPIAGVLPTTSQKSIRGFFSPRQPRLKQSNLAKDC 462
Query: 483 --DNNSITDTSLNVNN--------SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 532
N+S+ + N + S D S E P++ S + + + G
Sbjct: 463 EAINDSVPNERKNDSGPGHRTSGISPPDASPDFEADPQTSQESTTV----SAVPSRIVAG 518
Query: 533 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 592
+N +Q+ W +I + P C+GH+EPCV V KKP
Sbjct: 519 INVMSSIPEQE------------------SWNKI--FKKRPPPRCEGHEEPCVRLVTKKP 558
Query: 593 GPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
G GR F++C R GP+ N E C F W
Sbjct: 559 GINRGRSFWICPRPLGPSGNKETGTQWRCPTFIW 592
>gi|242266565|gb|ACS91130.1| APN2 [Microsporum gypseum]
Length = 596
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 165/644 (25%), Positives = 262/644 (40%), Gaps = 122/644 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 23 MFDILEADIVVFQEAKIQRKDLQDDMVLVPGWDCYFSLPRQ----KKGYSGVVIYTR--- 75
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + +D
Sbjct: 76 ---SSKCAA-IRAEEGITGTLCPPNSSTPFRQLTASEQIGGYPSVEQMEELSEVDPATLD 131
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRC+I + F+L VY P + D R F+L F +L+ R L+ G+R+ + GD
Sbjct: 132 SEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEARVRNLIKMGKRVILTGD 189
Query: 188 LNIAPAAIDRCDAGPDFAKN----------EFRIWFRSML-----------VESGGSFFD 226
LNI+PAAID A KN R F ++ +E+ D
Sbjct: 190 LNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVGSTEETHDIEASPVLRD 249
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+ R HP R YTCW A NYG+RID+ILC+ D++ FV ++ E
Sbjct: 250 LCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS-------DDIRPW-FVESNIQEG 301
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 346
L GSDH PVY + + T R + I+
Sbjct: 302 ------------------------LMGSDHCPVYASISD--------TVPFEGRNVHILD 329
Query: 347 GVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS-LNNYCDSGIL 404
+ T +++ + + SG L E + + +D N S N+ + I
Sbjct: 330 IMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFRNHSLSRTNSEIKASIA 389
Query: 405 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR-KKAKKSQ 463
+ +EN S + S + + P + + + A
Sbjct: 390 TDTQAGLEMPDPVTAKKSALENKSPSVTMNPPSKRSHSKAAQTPPSKRLKPKSRPAGARS 449
Query: 464 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 523
GQ +L FF T +++ N+ T + QE E+ ++ +T
Sbjct: 450 NGQQTLAGFFKSER----------TSRAVSEENATTSSDSPQEAQTEA-----RLTLTSG 494
Query: 524 SCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKE 582
S E G + + S D F E W ++ + +P C+GH E
Sbjct: 495 LSSTMERGGSLPTRAASASPDSSVASLFSQTE-------SWSKM--FTKKPVPKCEGHDE 545
Query: 583 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
C++ V KKPG GR F++C+R GP+ + E+ C F W
Sbjct: 546 DCISLVTKKPGINCGRSFWICSRPLGPSGDKESGTPWRCPTFIW 589
>gi|242266571|gb|ACS91135.1| APN2 [Microsporum gypseum]
Length = 596
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 168/652 (25%), Positives = 269/652 (41%), Gaps = 138/652 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 23 MFDILEADIVVFQEAKIQRKDLQDDMVLVPGWDCYFSLPRQ----KKGYSGVVIYTR--- 75
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + +D
Sbjct: 76 ---SSKCAA-IRAEEGITGTLCPPNSSTPFRQLTASEQIGGYPSVEQMEELSEVDPTTLD 131
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRC+I + F+L VY P + D R F+L F +L+ R L+ G+R+ + GD
Sbjct: 132 SEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEARVRNLIKMGKRVILTGD 189
Query: 188 LNIAPAAIDRCDAGPDFAKN----------EFRIWFRSML-----------VESGGSFFD 226
LNI+PAAID A KN R F ++ +E+ D
Sbjct: 190 LNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVGSTEETHDIEASPVLRD 249
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+ R HP R YTCW A NYG+RID+ILC+ D++ FV ++ E
Sbjct: 250 LCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS-------DDIRPW-FVESNIQEG 301
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 346
L GSDH PVY + + T R + I+
Sbjct: 302 ------------------------LMGSDHCPVYASISD--------TVPFEGRDVHILD 329
Query: 347 GVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN---------VDRSLN 396
+ T +++ + + SG L E + + +D N + S+
Sbjct: 330 IMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFRNHSLSRTNSEIKASIA 389
Query: 397 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG-SSNHISPFHVDRA 455
+G+ ++ E +K+ + + SHS Q S + P ++
Sbjct: 390 TDTQAGLEMPDPVTAKKSALE---SKSPSVTMNPPSKRSHSKAAQTPPSKRLKP----KS 442
Query: 456 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 515
R +S GQ +L FF T +++ N+ T + QE E+
Sbjct: 443 RPAGARSN-GQQTLAGFFKSER----------TSRAVSEENATTSSDSPQEAQTEA---- 487
Query: 516 NKIPVTDYSCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 574
++ +T S E G + + S D F E W ++ + +
Sbjct: 488 -RLTLTSGLSSTMERGGSLPTRAASASPDSSVASLFSQTE-------SWSKM--FTKKPV 537
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
P C+GH E C++ V KKPG GR F++C+R GP+ + E+ C F W
Sbjct: 538 PKCEGHDEDCISLVTKKPGINCGRSFWICSRPLGPSGDKESGTPWRCPTFIW 589
>gi|238505976|ref|XP_002384190.1| DNA lyase, putative [Aspergillus flavus NRRL3357]
gi|220690304|gb|EED46654.1| DNA lyase, putative [Aspergillus flavus NRRL3357]
Length = 630
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 176/664 (26%), Positives = 265/664 (39%), Gaps = 139/664 (20%)
Query: 22 RKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRV 81
+ + + +ADI+ QETK++R++L+ D+V+ G++ FS R+ + GYSGV + R
Sbjct: 39 KAMFEILEADIVVLQETKIQRKDLRDDMVLVPGWDCHFSLPRS----KKGYSGVVIYTR- 93
Query: 82 KSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLK 125
P+ AEEG TG+L + G E L D
Sbjct: 94 ------NATCAPLRAEEGLTGVLCPPNSSVPFRDLPLDRQIGGYPTTEQLSTLELDAA-T 146
Query: 126 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 185
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV
Sbjct: 147 LDSEGRCVILEFPAFVLLGLYCPA--NRDESRDSFRQGFLDLMDARIRNLVAMGKRVFVT 204
Query: 186 GDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG------------GS 223
GDLNI+ ID A K +EF R F + LV SG +
Sbjct: 205 GDLNISRGEIDAAHASEAIRKGTTTEDEFISAPARRLF-NQLVYSGKVIGERDEGREQPA 263
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
FD+ RS HP RR YTCW A NYG+RID++LC+ L ++
Sbjct: 264 LFDICRSFHPNRRGMYTCWEQKINARPGNYGSRIDYVLCS---------LNMQDWFC--- 311
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-VPEIPQHSTPSL----- 337
E DI L GSDH PVY + V + + P +
Sbjct: 312 -ESDI-------------------QEGLMGSDHCPVYAIFKDSVNMLDIMNPPGIFDNGE 351
Query: 338 --ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCK---FSGSLPAESNSTGDTEDCSENVD 392
++ L+ KR K S K S LP S T
Sbjct: 352 RRQEYTTKLLLPTSGRLIPEFDKRRSIKDMFSRKPDMSSQKLPTTSALTA---------- 401
Query: 393 RSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHV 452
C S I + VY + + S G ++ S T+ + S P V
Sbjct: 402 ------CAS-IREQVYKIDAEENSLGASKPSLPIADSSPT--PKGTVRKRSEKSDPPPSV 452
Query: 453 DRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEV 508
R++ +++ Q +LK FF + VS + I++T + V S +
Sbjct: 453 KRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-TPDTPVQAMERSSGPL 507
Query: 509 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN-----VALLEW 563
P S S D + +H V ++ S+ F+ + V+ +W
Sbjct: 508 PASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQNSETVIDPIVSKEDW 563
Query: 564 RRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGY 619
++ + +P+C+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 564 SKL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCAT 621
Query: 620 FKWA 623
F WA
Sbjct: 622 FIWA 625
>gi|83773202|dbj|BAE63329.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 636
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 173/672 (25%), Positives = 267/672 (39%), Gaps = 144/672 (21%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + +ADI+ QETK++R++L+ D+V+ G++ FS R+ + GYSGV +
Sbjct: 36 TFEAMFEILEADIVVLQETKIQRKDLRDDMVLVPGWDCHFSLPRS----KKGYSGVVIYT 91
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG TG+L + G E L D
Sbjct: 92 R-------NATCAPLRAEEGLTGVLCPPNSSVPFRDLPLDRQIGGYPTTEQLSTLELDAA 144
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
+DSEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+F
Sbjct: 145 -TLDSEGRCVILEFPAFVLLGLYCPA--NRDESRDSFRQGFLDLMDARIRNLVAMGKRVF 201
Query: 184 VVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG------------ 221
V GDLNI+ ID A K +EF R F + LV SG
Sbjct: 202 VTGDLNISRGEIDAAHASEAIRKGTTTEDEFISAPARRLF-NQLVYSGKVIGERDEGREQ 260
Query: 222 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 281
+ FD+ RS HP RR YTCW A NYG+RID++LC+ L ++
Sbjct: 261 PALFDICRSFHPNRRGMYTCWEQKINARPGNYGSRIDYVLCS---------LNMQDWFC- 310
Query: 282 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRY 341
E DI L GSDH PVY + S+
Sbjct: 311 ---ESDI-------------------QEGLMGSDHCPVYAIFKD----------SVC--- 335
Query: 342 LPIIRGVQQTLVSVLMKREVAKQGKS---------CKFSGSLPAESNSTGDTEDC-SENV 391
+ G Q ++ ++ + G+ SG L E + +D S
Sbjct: 336 ---LNGQQVNMLDIMNPPGIFDNGERRQEYTTKLLLPTSGRLIPEFDKRRSIKDMFSRKP 392
Query: 392 DRSLNNYCDSGIL-------QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSS 444
D S + L + VY + + S G ++ S T+ + S
Sbjct: 393 DMSSQKLPTTSALTACASIREQVYKIDAEENSLGASKPSLPIADSSPT--PKGTVRKRSE 450
Query: 445 NHISPFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTD 500
P V R++ +++ Q +LK FF + VS + I++T + V
Sbjct: 451 KSDPPPSVKRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-TPDTPVQA 505
Query: 501 TSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN--- 557
S +P S S D + +H V ++ S+ F+ +
Sbjct: 506 MERSSGPLPASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQNSETVID 561
Query: 558 --VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEA 615
V+ +W ++ + +P+C+GH+EPC++ KKPG GR F++C R GP+ N E
Sbjct: 562 PIVSKEDWSKL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLGPSGNKEK 619
Query: 616 N----CGYFKWA 623
C F WA
Sbjct: 620 GTQWRCATFIWA 631
>gi|242266576|gb|ACS91139.1| APN2 [Microsporum gypseum]
Length = 596
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 166/653 (25%), Positives = 270/653 (41%), Gaps = 140/653 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 23 MFDILEADIVVFQEAKIQRKDLQDDMVLVPGWDCYFSLPRQ----KKGYSGVVIYTR--- 75
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + +D
Sbjct: 76 ---SSKCAA-IRAEEGITGTLCPPNSSTPFRQLTASEQIGGYPSVEQMEELSEVDPTTLD 131
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRC+I + F+L VY P + D R F+L F +L+ R L+ G+R+ + GD
Sbjct: 132 SEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEARVRNLIKMGKRVILTGD 189
Query: 188 LNIAPAAIDRCDAGPDFAKN----------EFRIWFRSML-----------VESGGSFFD 226
LNI+PAAID A KN R F ++ +E+ D
Sbjct: 190 LNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVGSTEETHDIEASPVLRD 249
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+ R HP R YTCW A NYG+RID+ILC+ D++ FV ++ E
Sbjct: 250 LCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS-------DDIRPW-FVESNIQEG 301
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 346
L GSDH PVY + + T R + I+
Sbjct: 302 ------------------------LMGSDHCPVYASISD--------TVPFEGRDVHILD 329
Query: 347 GVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN---------VDRSLN 396
+ T +++ + + SG L E + + +D N + S+
Sbjct: 330 IMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFRNHSLSRTNSEIKASIA 389
Query: 397 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG-SSNHISPFHVDRA 455
+G+ ++ E +K+ + + SHS Q S + P ++
Sbjct: 390 TDTQAGLEMPDPVTAKKSALE---SKSPSVTMNPPSKRSHSKAAQTPPSKRLKP----KS 442
Query: 456 RKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 514
R +S GQ +L FF +R++ + + N+ T + + P+
Sbjct: 443 RPTGARSN-GQQTLAGFFKSERTSRAVSEENATTSS----------------DSPQEAQT 485
Query: 515 SNKIPVTDYSCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETS 573
++ +T S E G + + S D F E W ++ +
Sbjct: 486 EARLTLTSGLSSTMERGGSLPTRAASASPDSSVASLFSQTE-------SWSKM--FTKKP 536
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
+P C+GH E C++ V KKPG GR F++C+R GP+ + E+ C F W
Sbjct: 537 VPKCEGHDEDCISLVTKKPGINCGRSFWICSRPLGPSGDKESGTPWRCPTFIW 589
>gi|350297224|gb|EGZ78201.1| DNase I-like protein [Neurospora tetrasperma FGSC 2509]
Length = 654
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 162/685 (23%), Positives = 275/685 (40%), Gaps = 144/685 (21%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+++ + D+ +ADI+ QETK++R++L+ D+V+ G++ +F+ + GYSGVA +
Sbjct: 26 TVKAMFDTLEADIVVIQETKIQRKDLRDDMVLVPGWDVYFNLPTY----KKGYSGVAIYT 81
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL--------------- 124
R + P+ AEEG TG+L S D D+ +
Sbjct: 82 R-------SSKCCPIRAEEGITGVLCPPNSSTK--FRDLPADQQIGGYPTPGQLSSDIDE 132
Query: 125 -KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
++DSEGRCVI + F+L VY P + D RI+F+ F + R L+ G+ +F
Sbjct: 133 AQLDSEGRCVILEFPAFVLIGVYSPA--TRDETRIEFRQAFIDAMDARVRNLVSMGKEVF 190
Query: 184 VVGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------G 222
+ GDLNI +D K + F + +V G
Sbjct: 191 LCGDLNIIRNEMDTAGLPEQLKKEAMTLDQFISTPSRRFLNQIVVGGRVIGEPDEGREKP 250
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 282
+D+ R HP+R YTCW + A N+G+RID++LC+ FV +
Sbjct: 251 VLWDLCREFHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGIKDW--------FVDAN 302
Query: 283 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VP------- 327
+ E L GSDH PVY + + +P
Sbjct: 303 IQEG------------------------LLGSDHCPVYATISDSVSRDGVIIPITDIMNP 338
Query: 328 -----------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPA 376
E Q ++R +P +Q++ + +K+ K + P
Sbjct: 339 EGMFKNGQRQREWSQKDCLPTSARLIPEF-DRRQSIKDMFVKK---------KTPSNTPK 388
Query: 377 ESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASH 436
+ D++D S++ + S + +LQG S+S+ + E +
Sbjct: 389 SATPAADSQDISDSPNTSSITVNATTVLQGTASSASSPRQWLSQSAATEPALSQTSPVPK 448
Query: 437 STITQGSSNHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITD 489
Q + P A K S+ G Q +L FF ++ V+ D+ + +
Sbjct: 449 RQAEQPAPYTRPPKKTKAALAKQPSSKTGPGPSQSTLMGFFKAKTPTPTVNPDERHGPIN 508
Query: 490 TSLNVNNSVTDTSL------SQEEVPESHHHSNKIPVTDYSCSVHELHGVN-SSVCSHDQ 542
+ + + +T+L ++E P+ ++ I D + H+ + + +
Sbjct: 509 GNNHSPATTAETALRNEPSTAKESQPKQSFEADNIEEWDENTVEHKTNPTTYRETSTAME 568
Query: 543 DEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFV 602
DE KGK D +N + W ++ L + +P C+ H E C + V KKPG GR F++
Sbjct: 569 DEGKGKTIFDPIQNKES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYM 622
Query: 603 CARAEGPASNPEAN----CGYFKWA 623
CAR GP+ N E C F W+
Sbjct: 623 CARPLGPSGNKETGTEFRCKTFIWS 647
>gi|16904254|gb|AAL30835.1|AF440398_3 DNA lyase-like protein [Zymoseptoria tritici]
Length = 594
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 168/683 (24%), Positives = 263/683 (38%), Gaps = 158/683 (23%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R S S + + D ++DI+ QE K+++++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYPPWNNTRSFKSMFDILESDIVVMQELKIQKKDLRDDMVLVDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ +FS K + GYSGV + R P+ AEEG G+L++ L
Sbjct: 61 DCYFSLP----KYKKGYSGVGIYTR-------NATCAPIRAEEGLLGVLQSPSGTPYRDL 109
Query: 116 ED----------FSKDEL----LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
+ F EL +D+EGRCVI + F+LF VY P S ++ F+
Sbjct: 110 PESESIGGYPSAFQVAELGVDPAALDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFR 167
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID----------RCDAGPDFAKNEFRI 211
FF L R L+ QG+R+ +VGDLN+ ID R D R
Sbjct: 168 SGFFLALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRR 227
Query: 212 WFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
F +L + G +D R HP RR YT W + A N G+RID +
Sbjct: 228 IFNQLLTDGEVIGERDEGRDAGVLWDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFV 287
Query: 261 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
L A + + V + +I L GSDH PVY
Sbjct: 288 LVA-------------DVMQSWVKDANI-------------------QEGLLGSDHCPVY 315
Query: 321 MCLGEVP----------EI--PQHSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQG 365
+V EI P STP+ +++ +P R ++ + +K+ + Q
Sbjct: 316 ADFHDVVADDGGNVALLEIMNPPGSTPAFSAKRMPEFDKRRSIKSMFAAPPVKKITSSQL 375
Query: 366 KSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE 425
+ A++N + D S D++ + D
Sbjct: 376 ERTPSGIDAAAQANVP--SADISPPEDKAAASQSDE------------------------ 409
Query: 426 NCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF-HKRSNVSHDDN 484
A + + S P + + GQ SLK FF K S V D
Sbjct: 410 --------ARPPSKRKASIPSKEPLPSKKQKDTKVAPSRGQQSLKGFFSSKASPVKPDLK 461
Query: 485 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDE 544
+ + L++ + + + + P + S + P S S V + + S ++ +
Sbjct: 462 SQESSQKLSIASPPAEVAFPPPQSPSTTFPSQEPPSPIASAS-PTADQVATQIASAERSQ 520
Query: 545 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 604
+ W + + PLC+GH+EPC KK G GR F++CA
Sbjct: 521 R----------------SWGAL--FTKPPAPLCEGHEEPCKTLQTKKKGSNQGRSFWMCA 562
Query: 605 RAEGPASNPEAN----CGYFKWA 623
R GP+ E CG F WA
Sbjct: 563 RPLGPSGEKEKGTEWRCGTFIWA 585
>gi|340372931|ref|XP_003384997.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Amphimedon queenslandica]
Length = 438
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 153/281 (54%), Gaps = 34/281 (12%)
Query: 1 MKIVTYNVNGLRQRV-SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
M+++T+NVNGL+ V ++ +L+ LDS ADIIC QE K + +++ ++ +A+GY S+F
Sbjct: 1 MRVLTWNVNGLKAVVKNRQTNLKDFLDSLSADIICLQEVKTTKDQIEENIAIAEGYTSYF 60
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTG-----LLETSGSKIMEG 114
S +T R GYSGVATFCR PVA EEG TG L ++ G ++
Sbjct: 61 SFCKT----RQGYSGVATFCRT--------TVTPVAVEEGITGSCHVGLKDSIGFPVL-- 106
Query: 115 LEDFSKDELLKIDSEGRCVITDHGH-----FILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
D + +E ++++EGR ++T+H ++ NVY PR D ++ R+ +K+ F VL
Sbjct: 107 --DLNDEETEQLNNEGRGLLTEHLQENGRGLVIINVYCPRVDPDNPDRLPYKIHFLSVLH 164
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRC--DAGPDFAK----NEFRIWFRSMLVE-SGG 222
+R + L G+ + + GD N ID + P F K E + F S +
Sbjct: 165 ERTKRLQAGGKDVLICGDFNCVLDIIDSAAMEDMPTFTKEPKTKELLLSFISKTPPITNE 224
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
D +R HP R +YTCW + TG+ Q NYG RID+IL +
Sbjct: 225 VLLDTYRYLHPTERGSYTCWCTATGSRQLNYGQRIDYILAS 265
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 562 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 621
+W+++ + PLC GHKEP V RVVKKPGP R+F+VC R +G +P A+C +FK
Sbjct: 377 DWQKVFK-APPKAPLCSGHKEPAVLRVVKKPGPNHNRKFYVCGRPDGSKHDPNASCNFFK 435
Query: 622 W 622
W
Sbjct: 436 W 436
>gi|322696797|gb|EFY88584.1| DNA lyase [Metarhizium acridum CQMa 102]
Length = 634
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 168/714 (23%), Positives = 278/714 (38%), Gaps = 184/714 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+I T+NVNG+R Q + + + + D ++DI+ QETK++R++L+ D+V+ G+
Sbjct: 3 FRITTWNVNGIRNPFGYQPWREQRTFQAMFDILESDIVVMQETKIQRKDLQDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ FFS K + GYSGVA + R S P+ AEEG TG+L K
Sbjct: 63 DVFFSLP----KHKKGYSGVAIYTRNAS-------CAPIRAEEGITGVL--CPPKSTTKF 109
Query: 116 EDFSKDELLK----------------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
D D+ + +DSEGRCVI + F+L VY P + D R++
Sbjct: 110 RDLPSDQQIGGYPRPGQLSGIVEDTVLDSEGRCVILEFPAFVLLGVYCPA--NRDESRVE 167
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W----- 212
F+ FF L R L+ +G+ + + GDLN+ + +D + + K I W
Sbjct: 168 FRTSFFEALAARIRNLVAEGKEVILAGDLNVIRSEMDSTNVMENLRKENMTIDEWISLPT 227
Query: 213 ---FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 258
F ++ E +D+ R HP R TCW + N G+RID
Sbjct: 228 RRIFNQLIFEGSIVGDRDEGRETPVLWDLCRCFHPSRLGMNTCWDTKKNTRPANNGSRID 287
Query: 259 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 318
+ILC+ F + ++ E L GSDH P
Sbjct: 288 YILCSNGIKDW--------FTSANIQEG------------------------LMGSDHCP 315
Query: 319 VYMCLG--------------------------EVPEIPQHSTPSLASRYLPIIRGVQQTL 352
V+ + V ++ Q L+++ +P +Q++
Sbjct: 316 VFATIAGTVASNGRQVSINDVMNPAGMFENGTRVRDLAQKDILPLSAKLIPEF-DRRQSI 374
Query: 353 VSVLMKREVAKQGKSCKF---SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYC 409
+ K+ + + ++ S S AE S D S +D +L +
Sbjct: 375 RDMFFKKVTSAERRTTPHNSESSSFKAEDTSQASDNDASSQIDNALQTVNTN-------- 426
Query: 410 SSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKA------KKSQ 463
+ +N+ + +++ + D + P + R++ A +K
Sbjct: 427 TPTNKPAALPYSQPRKRSPDPIDPV--------------PRQLKRSKSAADPIGSKQKIS 472
Query: 464 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 523
GQ +LK FF S+V L + D PE+ ++ +P T
Sbjct: 473 AGQTTLKGFFKPVSSV------------LPSPAVLAD--------PEAQSNATDLPATKT 512
Query: 524 SCSV---------HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE-WRRIQQLMETS 573
S S +E S +HD + D+ + + E W ++ L +
Sbjct: 513 SPSTKGSSENLTSNEFMPPFSEQPAHDSLVDTSPKSPDRVFDPIQAKESWSKL--LGKRV 570
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
+P C+ H EPC++ V KKPG GR F++C R GP+ E CG F W+
Sbjct: 571 VPRCE-HDEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKERGSEWRCGTFIWS 623
>gi|398388271|ref|XP_003847597.1| APN2 DNA lyase apurinic/apyrimidinic [Zymoseptoria tritici IPO323]
gi|339467470|gb|EGP82573.1| APN2 DNA lyase apurinic/apyrimidinic [Zymoseptoria tritici IPO323]
Length = 608
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 170/697 (24%), Positives = 266/697 (38%), Gaps = 172/697 (24%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R S S + + D ++DI+ QE K+++++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYPPWNNTRSFKSMFDILESDIVVMQELKIQKKDLRDDMVLVDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ +FS K + GYSGV + R P+ AEEG G+L++ L
Sbjct: 61 DCYFSLP----KYKKGYSGVGIYTR-------NATCAPIRAEEGLLGVLQSPSGTPYRDL 109
Query: 116 ED----------FSKDEL----LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
+ F EL +D+EGRCVI + F+LF VY P S ++ F+
Sbjct: 110 PESESIGGYPSAFQVAELGVDPAALDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFR 167
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID----------RCDAGPDFAKNEFRI 211
FF L R L+ QG+R+ +VGDLN+ ID R D R
Sbjct: 168 SGFFLALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRR 227
Query: 212 WFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
F +L + G +D R HP RR YT W + A N G+RID +
Sbjct: 228 IFNQLLTDGEVIGERDEGRDAGVLWDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFV 287
Query: 261 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
L A + + V + +I L GSDH PVY
Sbjct: 288 LVA-------------DVMQSWVKDANI-------------------QEGLLGSDHCPVY 315
Query: 321 -------------MCLGEVPEIPQ-------------HSTPSLASRYLPII---RGVQQT 351
+ L E+ P STP+ +++ +P R ++
Sbjct: 316 ADFHDVVDDHGRNVSLLEIMNPPGVFENGQRKVEWTLQSTPAFSAKRMPEFDKRRSIKSM 375
Query: 352 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS 411
+ +K+ + Q + SG PA + + + D S + D++ + D
Sbjct: 376 FAAPPVKKFASSQLERTP-SGIDPA-AQANAPSADISPHEDKAAASQSDE---------- 423
Query: 412 SNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKS 471
A T + S P + + GQ SLK
Sbjct: 424 ----------------------ARPPTKRKASIPSKDPLPSKKQKDTKAAPSKGQKSLKG 461
Query: 472 FF-HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 530
FF K S V D + + ++ + + +L + P + S + P S S
Sbjct: 462 FFSSKASPVKPDLQSQESSQKTSITSPPAEVALPPPQSPSTTFPSQEPPSPTASAS-PTA 520
Query: 531 HGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVK 590
V + + S ++ ++ W + + PLC+GH+EPC K
Sbjct: 521 DQVATQIASAERSQR----------------SWGAL--FTKPPAPLCEGHEEPCKTLQTK 562
Query: 591 KPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
K G GR F++CAR GP+ E CG F WA
Sbjct: 563 KKGSNQGRSFWMCARPLGPSGEKEKGTEWRCGTFIWA 599
>gi|146399949|gb|ABQ28691.1| apn1 [Neosartorya fischeri]
Length = 581
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 166/643 (25%), Positives = 262/643 (40%), Gaps = 113/643 (17%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQETK++R++L+ D+V+ G++ +FS +T K G +GV C S
Sbjct: 1 MFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPKT--KKEEGLAGV--LCPPNS 56
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
S + LP + G G +E L + D +DSEGRCVI + F+L
Sbjct: 57 SVSFRD--LPEEQQVG--------GYPTIEQLSELEVDAA-TLDSEGRCVILEFPAFVLL 105
Query: 144 NVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD 203
+Y P + D R F+ F ++ R L+ G+R+FV GDLNIA ID A
Sbjct: 106 GIYSPA--NRDESRDNFRHSFIDLMDARIRNLVAMGKRVFVTGDLNIAKGEIDAAHATEA 163
Query: 204 FAK-----NEF-----RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCW 242
K +EF R F +L + FD+ RS HP RR YTCW
Sbjct: 164 IRKGTVTEDEFISVPARRVFNQLLSDGRVIGQRDEGREIPVLFDICRSFHPGRRGMYTCW 223
Query: 243 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 302
A NYG+RID++LC+ D+Q F ++ E
Sbjct: 224 EQRIIARPGNYGSRIDYVLCS-------LDMQDW-FSDSNIQEG---------------- 259
Query: 303 WKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPII----RGVQQTLVSVLMK 358
L GSDH PVY +V + + L P + + Q+ L+
Sbjct: 260 --------LMGSDHCPVYAVFKDVVRLGEKEVSILDIMNPPGMFKDGQRQQEYSTKYLLP 311
Query: 359 ---REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQE 415
R + + K +S++ T + R + + V S+++Q
Sbjct: 312 TSGRLIPEFDKRRSIKDMFSRKSSTNAQTPTTNPPALRRFASTQGTETPTAVSESTTSQS 371
Query: 416 -SEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR----KKAKKSQLGQLSLK 470
+ + T+TI+ R + S P V R++ + + S GQ +LK
Sbjct: 372 VAVSDSTQTIQIVRKRSQ----------KSETGFPVSVKRSKSGSAQPSAPSSAGQRTLK 421
Query: 471 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 530
FF +++ + +I S +V+ T+ S + P + + + L
Sbjct: 422 GFFKPKTDPAG--QATIARDSASVSTVPTNQSAAFPRKPTPVTEPTALEAIPTAPAGEAL 479
Query: 531 HG------VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 584
G ++ S D+ KE +W ++ + +P C+GH+EPC
Sbjct: 480 PGEQPNSATTTTPASSQNDDTVHDPIASKE-------DWSKL--FTKRPVPRCEGHQEPC 530
Query: 585 VARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 531 ISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 573
>gi|326481851|gb|EGE05861.1| DNA lyase [Trichophyton equinum CBS 127.97]
Length = 592
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 177/669 (26%), Positives = 278/669 (41%), Gaps = 171/669 (25%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS K + GYSGV + R
Sbjct: 20 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLP----KQKKGYSGVVIYTR--- 72
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 73 ---SSKCAA-IRAEEGVTGALCPPSSKTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 128
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ R L+ G+R+ + GD
Sbjct: 129 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 186
Query: 188 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVESGGS------------F 224
LN AID A K E+ RI+ R LV GS
Sbjct: 187 LNTCAGAIDSAPALERIRKGTETEEEYLSYPSRRIFNR--LVRPVGSTGDTHDTETPPVL 244
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
D+ R HP R YTCW A NYG+RID+ILC+ +++S FV ++
Sbjct: 245 RDLCREFHPGRTGMYTCWNQKVNARPGNYGSRIDYILCS-------DNIRSW-FVESNIQ 296
Query: 285 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 344
E L GSDH PVY + + ++P
Sbjct: 297 EG------------------------LIGSDHCPVYASISD--KVP-------------- 316
Query: 345 IRGVQQTLVSVLMKREVAKQG---------KSCKFSGSLPAESNSTGDTEDCSENVDRSL 395
+ G ++ ++ + + + G SG L E + + +D N S
Sbjct: 317 LDGKDVHILDIMNPKGIFEDGVEQPRSNKITPLALSGKLIPEFDRRRNIKDMFRNHSLSR 376
Query: 396 NN-----YCDSGILQGVYCSSSNQESEGEFTK-----TIENCRDSANVASHSTITQGS-S 444
NN + I G ++E K TI N SHS Q S S
Sbjct: 377 NNSEVKVSTTTDIQAGSEIPGPTSQTESTLEKKGAPVTINN----PPKRSHSKGAQASPS 432
Query: 445 NHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDTSL 503
+ P + R +S GQ +L FF +R++ + + N+ T +S
Sbjct: 433 KRLKP----KGRPTGTRSN-GQQTLAGFFKSERTSRAVSEENA------------TASSD 475
Query: 504 SQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVA---- 559
S +E P + P ++ S ++ V + V + N+V
Sbjct: 476 SPQETP---AEAKIAPASELSSMAEKIDSVPTGVIASPD-------------NSVVPSCS 519
Query: 560 -LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN-- 616
W ++ + +P C+GH E C++ V KKPG GR F++C R GP+ + E+
Sbjct: 520 PTESWSKV--FTKKPVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTP 577
Query: 617 --CGYFKWA 623
C F W+
Sbjct: 578 WRCPTFIWS 586
>gi|452825432|gb|EME32429.1| AP endonuclease 2 [Galdieria sulphuraria]
Length = 510
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 148/497 (29%), Positives = 216/497 (43%), Gaps = 96/497 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ T+NVNGL + G + DI+C QETK+ R++L + + F S
Sbjct: 1 MRLCTWNVNGLESLFRK-GYFADFVYRTSPDILCLQETKISRRKLAQWSISTRDWNCFLS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---------------- 104
+T++ GYSGV+TFC+ P + AEEG +G L
Sbjct: 60 ICKTNE----GYSGVSTFCQSHCPL--------LKAEEGISGFLPAECLAWNPSRSWFCN 107
Query: 105 --------ETSGSKIMEGLEDFSKDELL-KIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
ET+ S + E ELL K+D EGRCVI + FILFNVY P S++T
Sbjct: 108 QREIPIWRETAYS-VGYHFETTENSELLTKLDKEGRCVIVEFPFFILFNVYVPFDSSDET 166
Query: 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA---------GPDFAK 206
++K F L KR + +L G+ + V GD N A ID CD G F
Sbjct: 167 --FEYKYIFIERLLKRIKMVLEGGKNVVVCGDFNCARERIDHCDPEGIFQNKPRGSLFES 224
Query: 207 NEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
+ R F +++ S G DVFR HPER +AYTCW + TGA + N+GTRID+I
Sbjct: 225 DSCRQLF-NVICSSEGPLVDVFRYFHPERLDAYTCWNNQTGARKTNFGTRIDYI------ 277
Query: 267 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
L + FV + CDI D + GSDH PVY+ +
Sbjct: 278 ------LANRAFVENFITNCDIFND-------------------IYGSDHCPVYIEFRSI 312
Query: 327 PEIPQHS-----TPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNST 381
+ S P ++ P + G QQ+L ++ +++ KS K P +T
Sbjct: 313 VSLSAESLHVERLPPFCCQHFPDLLGSQQSLKDMM---KISIHDKSNKIVEMRPHFVEAT 369
Query: 382 GDTEDC-SENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 440
C + D S + S +G Y + ++ F K+ D+ + +S+
Sbjct: 370 AFNRTCITMKSDTSTSEEGHSQ--EGKYDDTIRLPTKRNFEKSTSIEMDTFSNREYSSTV 427
Query: 441 QGSSNHISPFHVDRARK 457
GS N FHV + +K
Sbjct: 428 SGSEN---CFHVTKYQK 441
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 562 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 621
+WR++ ++ +PLC GH EPC+ R VKK G GR+F+VC R G E C +F
Sbjct: 445 DWRKLFHNLQ-KVPLCSGHNEPCLLRTVKKKGANLGRKFYVCGRPIGKGV--EGRCNFFL 501
Query: 622 W 622
W
Sbjct: 502 W 502
>gi|406868502|gb|EKD21539.1| DNA lyase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 633
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 181/704 (25%), Positives = 293/704 (41%), Gaps = 159/704 (22%)
Query: 1 MKIVTYN--VNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
++I T+N VNG+R + + ADI+ QETK+++++L+ D+V+ G++ F
Sbjct: 10 LRITTWNEEVNGIRS---------AMFEILQADIVVMQETKIQKKDLRDDMVLVPGWDVF 60
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
FS K + GY+GVA + R S P+ AEEG TG+L S+ D
Sbjct: 61 FSLP----KHKKGYAGVAVYTRNSS-------CAPIRAEEGITGVLTPPNSQT--SFFDL 107
Query: 119 SKDELL-----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
+D+ + +DSEGRCVI + F+L Y P + D R +F+
Sbjct: 108 PEDQQIGGYPTPSQLSYCSLDAATLDSEGRCVILEFPAFVLIGTYCPA--NRDESRDEFR 165
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----------RI 211
+ F + ++ R L+ G+R+F GDLNI ID +AG K R
Sbjct: 166 IGFLNAVEARVRNLVAAGKRVFWTGDLNIIREEIDTANAGEQLRKQGITVEEYLSTPARR 225
Query: 212 WFRSMLVESGGSF------------FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
+LV+ G F +D+ RS HP R +TCW A N+G+RID+
Sbjct: 226 MLNQLLVD-GKVFGERDEGREKPIMWDICRSFHPNRLGMFTCWEQKINARPGNFGSRIDY 284
Query: 260 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 319
+LC+ D+K W + + L GSDH PV
Sbjct: 285 VLCSQ--------------------------DWKDW------FCESNIQEGLMGSDHCPV 312
Query: 320 YMCLGEVPEIPQ---HSTPSLASRYLPIIRGVQQ---------TLVSVLMKREVAKQGKS 367
Y L E EI H ++S G++Q + + L+ ++
Sbjct: 313 YAVLKEKVEIEGKEVHVRDIMSSGMFK--DGLRQREWSAKDLLPMSARLIPEFNHRRSIR 370
Query: 368 CKFS--GSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL--QGVYCSSSNQESEGEFTKT 423
F+ SL A NS T+ + V +L D G+L +G S S +++ E T+
Sbjct: 371 DMFTKKSSLTASDNSLS-TQGAQDEVGTALP---DRGLLTSKGAMASVSTLQAKPEVTED 426
Query: 424 IENCRDSANVASHSTITQGSSNHISPFHVDRARKKAK--------------KSQLGQLSL 469
+ + V+ ++I + P R + + +S GQ SL
Sbjct: 427 LTA--VTTTVSQTTSIQSSAKPPKRPIESPTTRPQKRGKPSTSSKSTTSKAQSGKGQSSL 484
Query: 470 KSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHE 529
FF K N+SI D S T T +S + +PES + P + +
Sbjct: 485 MGFF-KSKQPQDSQNSSIIDA-----KSDTATMISIDTLPESSDLAP--PAKEEPPATQS 536
Query: 530 LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARV 588
++ ++ + D+K + +A+ + W ++ L + +P C+ H +PC++ +
Sbjct: 537 SENLSPNLAFNPADQK-------SVHDPIAVKDSWSKL--LGKRVVPRCE-HDDPCISHI 586
Query: 589 VKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWAFSKSK 628
KK G GR F++C R GP+ E N CG F W+ +K
Sbjct: 587 TKKGGENCGRSFYMCPRPLGPSGKKEKNTEWRCGTFIWSSDWTK 630
>gi|345326277|ref|XP_001510545.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Ornithorhynchus anatinus]
Length = 671
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 193/447 (43%), Gaps = 76/447 (17%)
Query: 45 LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
L + +GY S+FS +R GR+GYSGVATFC+ + A PVAAEEG +GLL
Sbjct: 187 LDEPTAIVEGYNSYFSFSR----GRSGYSGVATFCK--------DSATPVAAEEGLSGLL 234
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSE 153
+ I E F++DEL +DSEGR VIT H + NVY P AD E
Sbjct: 235 ADNRGAIGCYGDTEGFTEDELRALDSEGRAVITQHRIRTSDKREKTLTVINVYCPHADPE 294
Query: 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-AGPD-FAKNEFRI 211
R FKL+F+H+L+ R E +L G + ++GD+N + ID CD + P+ F +N R
Sbjct: 295 KPERKTFKLRFYHLLKLRAEAILRAGSHVIILGDVNTSHRPIDHCDPSDPEHFDENPGRR 354
Query: 212 WFRSMLVESG-----------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
W L E G G+F D FR HP + A+TCW GA NYG
Sbjct: 355 WLNEFLWEPGKAPGKGEVADPPPGGGGGAFVDSFRYFHPTQTNAFTCWSVPQGARHTNYG 414
Query: 255 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314
TRID+IL VT + +L + +EGS
Sbjct: 415 TRIDYILG------------DRILVTEEFEDSVLLPE-------------------VEGS 443
Query: 315 DHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSL 374
DH PV L + P ++YLP G QQ L L++ + ++G S
Sbjct: 444 DHCPVRAVLKST-LMAAPKCPPFCTKYLPEFAGKQQKLSQFLVR--LDRRGGSRSSPPDS 500
Query: 375 PAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 434
P + + D + R+ G+ + +S + F K +N AN
Sbjct: 501 PESAEAVEDVAPPNRQEKRNSAEKTKVGVKKNRTSASRGGGTLLRFFKPGDNREGKANPP 560
Query: 435 SHSTITQGSSNHISPFHVDRARKKAKK 461
+ + + V +A ++AK+
Sbjct: 561 EKMGPDRAVQDQQAVIGVPQAAEQAKR 587
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 33/50 (66%)
Query: 577 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 626
CK H EPCV R VKK GP GR+F+VCAR G A+NP A C +F W K
Sbjct: 617 CKVHGEPCVMRTVKKAGPNHGRQFYVCARPVGHATNPAARCDFFLWVPKK 666
>gi|326471548|gb|EGD95557.1| DNA lyase [Trichophyton tonsurans CBS 112818]
Length = 592
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 176/669 (26%), Positives = 277/669 (41%), Gaps = 171/669 (25%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS K + GYSGV + R
Sbjct: 20 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLP----KQKKGYSGVVIYTR--- 72
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 73 ---SSKCAA-IRAEEGVTGALCPPSSKTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 128
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ R L+ G+R+ + GD
Sbjct: 129 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 186
Query: 188 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVESGGS------------F 224
LN AID A K E+ RI+ R LV GS
Sbjct: 187 LNTCAGAIDSAPALERIRKGTETEEEYLSYPSRRIFNR--LVRPVGSTGDTHDTETPPVL 244
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
D+ R HP R YTCW A NYG+RID+ILC+ +++S FV ++
Sbjct: 245 RDLCREFHPGRTGMYTCWNQKVNARPGNYGSRIDYILCS-------DNIRSW-FVESNIQ 296
Query: 285 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 344
E L GSDH PVY + + ++P
Sbjct: 297 EG------------------------LIGSDHCPVYASISD--KVP-------------- 316
Query: 345 IRGVQQTLVSVLMKREVAKQG---------KSCKFSGSLPAESNSTGDTEDCSENVDRSL 395
+ G ++ ++ + + + G SG L E + + +D N S
Sbjct: 317 LDGKDVHILDIMNPKGIFEDGVEQPRSNKITPLALSGKLIPEFDRRRNIKDMFRNHSLSR 376
Query: 396 NN-----YCDSGILQGVYCSSSNQESEGEFTK-----TIENCRDSANVASHSTITQG-SS 444
NN + I G ++E K TI N SHS Q S
Sbjct: 377 NNSEVKVSTTTDIQAGSEIPGPTSQTESTLEKKGAPVTINN----PPKRSHSKGAQAPPS 432
Query: 445 NHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDTSL 503
+ P + R +S GQ +L FF +R++ + + N+ T +S
Sbjct: 433 KRLKP----KGRPTGTRSN-GQQTLAGFFKSERTSRAVSEENA------------TASSD 475
Query: 504 SQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVA---- 559
S +E P + P ++ S ++ V + V + N+V
Sbjct: 476 SPQETP---AEAKIAPASELSSMAEKIDSVPTGVIASPD-------------NSVVPSCS 519
Query: 560 -LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN-- 616
W ++ + +P C+GH E C++ V KKPG GR F++C R GP+ + E+
Sbjct: 520 PTESWSKV--FTKKPVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTP 577
Query: 617 --CGYFKWA 623
C F W+
Sbjct: 578 WRCPTFIWS 586
>gi|71004198|ref|XP_756765.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
gi|46095654|gb|EAK80887.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
Length = 663
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 156/319 (48%), Gaps = 46/319 (14%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I +N+NGLR Q + LD ADI CFQETK+ R++L + + Y
Sbjct: 1 MRITVWNINGLRTLKGYQPWYKLPDWEACLDHLGADIACFQETKMTRKQLTEPMCILPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS-------- 107
+FF+ T GYSG T+ R V++P+ AE+G TG L +
Sbjct: 61 NAFFNFHPTK-----GYSGTVTYVR-------KSVSIPLKAEQGITGRLSVTNVSTNPLI 108
Query: 108 -----GSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
G + +D +D EGRCV+ D G F+LFNVY P + R+++K+
Sbjct: 109 PNDPIGCIPADTRDDVDAQIWNALDEEGRCVLLDLGLFVLFNVYCPNETGPE--RLEYKM 166
Query: 163 QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--------GPDFAKNEFRIWFR 214
++ L +R L+ +GR++ +VGD+NI ID CDA DF ++ R WF+
Sbjct: 167 TYYQCLAERAHRLIQEGRQVMIVGDMNIIRDPIDHCDAEQSIKEHGWDDFHQHPARSWFQ 226
Query: 215 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHD 272
S L G F DV R H +R++ +TCW + A NYG R+D+ L L + D
Sbjct: 227 SFLAPH-GKFHDVGRMYHADRKKMFTCWNTLIDARPANYGVRLDYTLATEGILPWIKGAD 285
Query: 273 LQSHNFVTCHVNECDILID 291
+Q+ + + H C I ID
Sbjct: 286 IQADVYGSDH---CPIYID 301
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 63/167 (37%), Gaps = 23/167 (13%)
Query: 453 DRARKKAKKSQLGQLSLKSFFHKRS--------------NVSHDDNNSITDTSLNVNNSV 498
D + K + SQ GQ L SFF K +VS D TS + N+V
Sbjct: 504 DSIKAKTRASQRGQTKLHSFFAKPKSLAPVATNETSQPIDVSSSDGMVAPKTSTS-GNTV 562
Query: 499 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 558
+TS H N D C ++E +E+ +
Sbjct: 563 DNTSTDPTRDVTKRHGPNVDEAEDAICDLNEFQATTPPTQPLPPNEQSAADRVGTS---- 618
Query: 559 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 605
L W I M PLC+ H EPC A V KPGP GR+F++C R
Sbjct: 619 --LAWGAIFSPMPA--PLCRNHSEPCRAWTVNKPGPNHGRKFWLCNR 661
>gi|255089412|ref|XP_002506628.1| predicted protein [Micromonas sp. RCC299]
gi|226521900|gb|ACO67886.1| predicted protein [Micromonas sp. RCC299]
Length = 583
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 173/379 (45%), Gaps = 99/379 (26%)
Query: 3 IVTYNVN--GLRQRVSQ--------------------FGSLRKLLDSF--DADIICFQET 38
IV++N+ GLRQ V+ +G + LLDS D D++ QE
Sbjct: 27 IVSWNIGLRGLRQLVASDRGADKTAAKDQHGVSRQLGYGCIDSLLDSLGSDVDVVALQEC 86
Query: 39 KL-RRQELKSDLVMADGYESFFS--------CTRTSDKGR--TGYSGVATFCRVKSPFSS 87
KL R +L ++ G++S+ + T+ +GR TGY+GVAT+ R+
Sbjct: 87 KLTSRSDLSPEIACPSGWDSYHAVCGDASGGAIPTTSRGRSKTGYAGVATYVRIGKRV-- 144
Query: 88 TEVALPVAAEEGFTGLLETSGSKIMEG---------LEDFSKDELLKIDSEGRCVITDHG 138
VAAEEG TG L T +I G E F + +L++DSEGRCV+ D G
Sbjct: 145 ------VAAEEGVTGAL-TPPERIARGDAVGHYGRMSEAFDRARMLELDSEGRCVLVDLG 197
Query: 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC 198
F+LFNVY P S+D R +FKL F ++ R+ LL GRR+ + GD N++ ID
Sbjct: 198 AFVLFNVYVPSLSSDDEDRERFKLDFLVAVEIRYRALLDAGRRVVLCGDWNVSYGVIDSA 257
Query: 199 DAGPD-------FAKNEFRIWFRSMLVESGGS-------FFDVFRSKHPERREAYTCWPS 244
A + +N+ R W R + G+ DVFR +P R AYTCW
Sbjct: 258 VAIEERLMDEALCERNQSRQWLRRQVSGGEGAKGAERDPLVDVFRRDYPAARGAYTCWNV 317
Query: 245 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 304
+ GA+ NYG+RID+ LC V C
Sbjct: 318 SAGAQLTNYGSRIDYFLC-------------DEVTAASVARC------------------ 346
Query: 305 GGMSTRLEGSDHAPVYMCL 323
G++ + EGSDHAPV++ +
Sbjct: 347 -GIAPKHEGSDHAPVFIIV 364
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 560 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 619
+ W+ IQ+ M + P C+GH PC R VK+ G GR FF C + +G + A+CG+
Sbjct: 518 VAAWKAIQKRM--APPKCRGHGLPCKVRTVKE-GANKGRGFFCCPKPKGMKGDKNADCGF 574
Query: 620 FKW 622
F+W
Sbjct: 575 FQW 577
>gi|392578943|gb|EIW72070.1| hypothetical protein TREMEDRAFT_41480 [Tremella mesenterica DSM
1558]
Length = 668
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 175/386 (45%), Gaps = 79/386 (20%)
Query: 1 MKIVTYNVNGLRQRVS--QFGSLRK-----LLDSFDADIICFQETKLRRQELKSDLVMAD 53
M+I+T+NVN LR + F SL+K LLD A I+CFQE K RR +L +
Sbjct: 1 MRILTWNVNVLRTCLDYHPFSSLKKRNIEGLLDELGAQIVCFQEHKTRRPQLDKTMACPG 60
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIME 113
Y++F++ R+ +TGYSGV T+ + + +P+ AEEG TGLL S M
Sbjct: 61 PYDAFWTFPRS----KTGYSGVCTYV-------DSRICVPLKAEEGITGLLLGDSSSTMR 109
Query: 114 -------------GLEDFSKDELL--------KIDSEGRCVITDHGHFILFNVYGPRADS 152
+E+ S + L ++D EGR V+ D G F+LFN+Y P +
Sbjct: 110 PPWSAEERIGCYPDMEELSFENELDGSVFDPKRLDMEGRAVVCDFGLFVLFNLYCPNETN 169
Query: 153 EDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-PDFAKNEFRI 211
+ R +K+ FFH LQ R L GR + + GD+NI A ID + G A+ ++
Sbjct: 170 DS--RRPYKMNFFHALQARVRALQAAGREVIIAGDINIMRAPIDSGEGGIRTSAEQHYQH 227
Query: 212 WFRSMLVE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 268
R +L + G DV R P+R + +TCW A NYG+RID ILC
Sbjct: 228 PARVILNDWCAPKGPMIDVVRESWPDRDDMFTCWNQKLDARPSNYGSRIDLILCT----- 282
Query: 269 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGEVP 327
PG P KGG + ++ GSDH PVY+ L E
Sbjct: 283 ----------------------------PGLRPWIKGGDIVPKVYGSDHCPVYIDLHESI 314
Query: 328 EIPQHSTPSLASRYLPIIRGVQQTLV 353
+P +L P+ R T +
Sbjct: 315 SLPSGQILTLHDALNPLDRPPTTTTI 340
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGYFKW 622
PLC H++PC +VK PGP G+RF++C+ G N + C YF W
Sbjct: 595 PLCTVHQQPCKDFIVKIPGPNKGKRFWLCSLPVGAGYDTGRSKRPREDVNRDFRCDYFLW 654
Query: 623 AFSKSKQK 630
S ++QK
Sbjct: 655 D-SANRQK 661
>gi|432091224|gb|ELK24429.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Myotis davidii]
Length = 607
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 147/269 (54%), Gaps = 39/269 (14%)
Query: 1 MKIVTYNVNGLRQRVSQ-------FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMAD 53
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L + +
Sbjct: 2 LRVVSWNINGIRSPLQAEEPNNCTTVAMARVLDRLDADILCLQETKVTRDALTEPLAITE 61
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-- 111
GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL +
Sbjct: 62 GYNSYFSFSRN----RSGYSGVATFCK--------DGATPVAAEEGLSGLLAPQNGDVGC 109
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKL 162
+++FS++EL +D+EGR ++T H + NVY P AD R+ FK+
Sbjct: 110 YGNMDEFSQEELRALDNEGRALLTQHKIRTWDGKEKILTIINVYCPHADPGRPERLTFKM 169
Query: 163 QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE- 219
+F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L +
Sbjct: 170 RFYRLLQIRAEALLPAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRRWMDGLLSKL 229
Query: 220 --SGGS----FFDVFRSKHPERREAYTCW 242
GGS F D +R HP++ A+TCW
Sbjct: 230 DCQGGSQVGAFIDAYRCFHPKQERAFTCW 258
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 41/191 (21%)
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE---SGGS----FFD 226
L G + ++GDLN A ID DA F ++ R W +L + GGS F D
Sbjct: 278 LPAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRRWMDGLLSKLDCQGGSQVGAFID 337
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+R HP++ A+TCW + TGA + NYG+RID++ L VT +
Sbjct: 338 AYRCFHPKQERAFTCWSTITGARRLNYGSRIDYV------------LGDRTLVTDTFQDS 385
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 346
+L + + GSDH PV L V +P P L +R+LP
Sbjct: 386 FLLPE-------------------VMGSDHCPVGAVL-NVSSVPAKQCPPLCTRFLPEFS 425
Query: 347 GVQQTLVSVLM 357
G Q ++ L+
Sbjct: 426 GTQLKILHFLV 436
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+PLC GH EPCV R VKK GP G F+VC+R GP+++P + C +F W+
Sbjct: 555 MPLCGGHGEPCVMRTVKKAGPNQGHHFYVCSRPRGPSTDPSSRCNFFLWS 604
>gi|378734461|gb|EHY60920.1| AP endonuclease 2 [Exophiala dermatitidis NIH/UT8656]
Length = 635
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 187/697 (26%), Positives = 285/697 (40%), Gaps = 149/697 (21%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R Q + + D+ +ADI+ FQETK++R++L+ D+V+ G+
Sbjct: 3 IRITTWNVNGIRNPFGYQPWRDKKTFAGMFDTLEADIVVFQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK----- 110
++++S K + GYSGV + R P+ AEEG TG+L S
Sbjct: 63 DNYWSLP----KHKKGYSGVVIYTR-------NATCAPIRAEEGITGILTPPNSSTAFRD 111
Query: 111 --IMEGLEDFSKDELLKI--------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ E + + + L I DSEGRCVI + F+L Y P D R F
Sbjct: 112 LPVEEQIGGYPSIQQLPISDYDPASLDSEGRCVILEFPAFVLIGTYCPA--ERDETRTHF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WF----R 214
+ F +VL R L+ G+R+ VGD+NI+ ID A K+ W R
Sbjct: 170 RTSFLNVLDARIRNLVKMGKRVVWVGDMNISREEIDTAAAEESMRKHGIDAAEWISTPAR 229
Query: 215 SMLVE--SGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
ML + GG +DV R+ H RR YTCW + A NYG+RID+
Sbjct: 230 RMLNQLLVGGKVRGERDEGRETAIMWDVCRAFHEGRRGMYTCWETKVNARPGNYGSRIDY 289
Query: 260 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 319
I+C+ HD++ D+ W N + L GSDH PV
Sbjct: 290 IICS-------HDMR----------------DW--WSDAN-------IQEGLLGSDHCPV 317
Query: 320 YMCLGEVPEIPQHSTPSLASRYLP--IIRGVQQTLVSVLMKREVAKQGKSC--KFSGSLP 375
Y L + I T L P + GV+Q RE + C SG L
Sbjct: 318 YAVLKDKVLINGKETHVLDLMNPPGMFVEGVRQ--------REWTTK---CLLPLSGKLI 366
Query: 376 AE---SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQE-----SEGEFTKTIENC 427
E S D + +S + ++ QGV + + + +E T + +
Sbjct: 367 QEFYKRQSIKDMLTRQPTLQKSKSTIDEA---QGVSTTPPSVQVSATGTEPTTTPSQSDE 423
Query: 428 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 487
R++ + ST ++++ A++KAK ++ +S K +++S + +
Sbjct: 424 REAVSKTDFSTCPSSTTSY--------AKRKAKTNETLSSVKRS---KSASISTPNGSGK 472
Query: 488 TDTSLN----VNNSVTDTSLSQEEVPESHHHSNKI-PVTDYSCSVHELHGVNSS------ 536
SL S TD+ ++Q PE S + P + S E V +S
Sbjct: 473 GQQSLKGFFAAKPSTTDSKMTQP--PEHSPQSGVLRPASIISNGGAEATNVLTSMATAAD 530
Query: 537 -----VCSHD-QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVK 590
+ S D E G F+ + W ++ P C+ H EPC V K
Sbjct: 531 ATTEALSSKDGMTEGSGPEFISTPAPSKTKHTWGKL--FSRPVAPKCE-HDEPCKIMVTK 587
Query: 591 KPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
KPG GR F++C R GP+ E C F WA
Sbjct: 588 KPGVNCGRSFWMCNRPLGPSGKQEKGTQWRCNTFIWA 624
>gi|302664446|ref|XP_003023853.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
gi|291187871|gb|EFE43235.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
Length = 588
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 175/661 (26%), Positives = 277/661 (41%), Gaps = 140/661 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R G+ F + +
Sbjct: 1 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLPRQK-------KGIYVFSKCAA 53
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
+ AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 54 ----------IRAEEGVTGALCPPSSRTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 103
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ R L+ G+R+ + GD
Sbjct: 104 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 161
Query: 188 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSML----------VESGGSFFD 226
LN ID A K E+ RI+ R + ES D
Sbjct: 162 LNTCAGPIDSAPALERIRKGTETEEEYLSYPARRIFNRLVRPVGSTGDTHDTESPPVLRD 221
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+ R HP R YTCW A NYG+RID+ILC+ +++S FV ++ E
Sbjct: 222 LCREFHPSRTGMYTCWNQKVNARPGNYGSRIDYILCS-------DNIRSW-FVESNIQEG 273
Query: 287 DIL-IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPII 345
I+ + + +P + + +GSDH PVY +G+ +P
Sbjct: 274 LIVCVKFGLI----SPSFNNLLIPNEQGSDHCPVYASIGD--RVP--------------F 313
Query: 346 RGVQQTLVSVLMKR----EVAKQGKSCK-----FSGSLPAESNSTGDTEDCSENVDRSLN 396
G ++ ++ + + +Q +S K SG L E + + +D N S N
Sbjct: 314 DGKDVHILDIMNPKGTFDDGVEQPRSNKITPLALSGRLIPEFDRRRNIKDMFRNHSLSRN 373
Query: 397 N-----YCDSGILQGVYC-SSSNQESEGEFTKTIENCRDSANVASHSTITQG-SSNHISP 449
N + L G ++Q + KT + A SHST Q S + P
Sbjct: 374 NSEVKMSTTTDTLAGSEIPGPASQTKSAQENKTARVTMNHAPKRSHSTGVQAPPSKRLKP 433
Query: 450 FHVDRARKKAKKSQLGQLSLKSFFHKRSN---VSHDDNNSITDTSLNVNNSVTDTSLSQE 506
+ R +S GQ +L FF VS ++ + +D+ V T S
Sbjct: 434 ----KGRPSGARSN-GQQTLVGFFKSERTSRAVSEENATASSDSPQEAPAEVKITPAS-- 486
Query: 507 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 566
E+ + +++ +P T + S NS V S E K F K
Sbjct: 487 ELASTAQNNDSVP-TAVTTSPD-----NSVVPSCSPTESWSKVFTRK------------- 527
Query: 567 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
+P C+GH E C++ V KKPG GR F++C R GP+ + E+ C F W
Sbjct: 528 ------PVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTPWRCPTFIW 581
Query: 623 A 623
+
Sbjct: 582 S 582
>gi|303313137|ref|XP_003066580.1| DNA lyase Apn2, putative [Coccidioides posadasii C735 delta SOWgp]
gi|240106242|gb|EER24435.1| DNA lyase Apn2, putative [Coccidioides posadasii C735 delta SOWgp]
Length = 588
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 177/650 (27%), Positives = 266/650 (40%), Gaps = 137/650 (21%)
Query: 31 DIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEV 90
DII QE K++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 10 DIIVLQELKIQRKDLRDDMVLVPGWDCFFSLP----KYKKGYSGVAIYTR-------NAT 58
Query: 91 ALPVAAEEGFTGLL----ETSGSKIM---EGLEDFSKDELLK--------IDSEGRCVIT 135
P+ AEEG TG+L TS + + + + + DE L +DSEGRCVI
Sbjct: 59 CSPIYAEEGVTGILCPPNSTSSYRELPESQQIGGYPTDEQLSTSEVSAETLDSEGRCVIL 118
Query: 136 DHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAI 195
+ F+L VY P + D R F+L F + L R L+ G+R+ V GDLNI+ AI
Sbjct: 119 EFPAFVLLGVYCPA--NRDETRDGFRLGFLNALDHRIRNLIFLGKRVVVAGDLNISRDAI 176
Query: 196 DRCDA----------GPDFAKNEFRIWFRSMLVESG------------GSFFDVFRSKHP 233
D A +F + RI F + LVE G +D+ RS P
Sbjct: 177 DSAHALEQIRKSRLTTDEFLSSPARIIF-NRLVEGGRVSHIEGVDKKDAVLWDMCRSFFP 235
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
R YTCW A N+G RID+ILC+ L ++++ + +++
Sbjct: 236 ARSGMYTCWEQRINARPGNFGARIDYILCS---------LDMKDWMSIADIQEGLMV--- 283
Query: 294 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLV 353
GN ++ + +GSDH PVY E + + G Q V
Sbjct: 284 ----GNNFQYALYQADSSQGSDHCPVYAIFKENVD----------------LHGDQIDFV 323
Query: 354 SVL---MKREVAKQGKS---CKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGV 407
+++ + E A+ S SG L E N + D +
Sbjct: 324 NLMNPSVDFEAAENSLSRSHLPLSGRLIPEFNRRRNIRD------------------MFL 365
Query: 408 YCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL--- 464
SS+ S GE + + N ++ S+ I R +K+ L
Sbjct: 366 RQSSTQNLSPGEINQNATSMSSMTNKGRPISLDLERSHEIDERDPKRRKKEPIAGVLPTT 425
Query: 465 GQLSLKSFFH------KRSNVSHDDNNSITDTSLN--VNNSVTDTSLSQEEVPESHHHSN 516
Q S++ FF+ K+SN++ D +I D+ N N+S S P+++
Sbjct: 426 SQKSIRGFFNPRQPRLKQSNLAK-DCEAINDSVPNERKNDSGPGHRTSGISPPDANPDFE 484
Query: 517 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 576
P T + + V S + + D D+E W +I + P
Sbjct: 485 ADPQTSQESTT--VSAVPSRIVA---DINVMSSIPDQE-------SWNKI--FKKRPPPR 530
Query: 577 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
C+GH+EPCV V KKPG GR F++C R GP+ N E C F W
Sbjct: 531 CEGHEEPCVRLVTKKPGINRGRSFWICPRPLGPSGNKETGTQWRCPTFIW 580
>gi|358384928|gb|EHK22525.1| DNA lyase, partial [Trichoderma virens Gv29-8]
Length = 630
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 176/687 (25%), Positives = 281/687 (40%), Gaps = 162/687 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L D+V+ G++ +FS R + GYSGVA +
Sbjct: 15 TFQAMFDILEADIVVMQETKIQRKDLTDDMVLVPGWDVYFSLPRH----KKGYSGVAIYT 70
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG G+L + G E L + DEL
Sbjct: 71 R-------NATCAPIRAEEGILGVLCPPKSSTQFRNLPKDQQIGGYPRPEQLPG-NIDEL 122
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
L +DSEGRCVI + F+L VY P + D R++F+++F L R L+ +G+++
Sbjct: 123 L-LDSEGRCVILEFPAFVLLGVYSPA--NRDESRVEFRMEFLQALDARVRNLVAEGKQVV 179
Query: 184 VVGDLNIAPAAIDRCDAGPDFAKNEFRI--WF----RSML--VESGGS------------ 223
+VGDLN++ +A D + + K + W R + + GG+
Sbjct: 180 LVGDLNVSRSAADSTNVVENLRKEGLSMEEWMNLPSRRLFNHLVYGGTVQGDRDEGREQP 239
Query: 224 -FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 282
+D+ R HP R TCW + N G+RID++LC+ H L+ ++VT
Sbjct: 240 VLWDLCREFHPAREGMNTCWDTKRNTRPANNGSRIDYVLCS-------HGLR--DWVT-- 288
Query: 283 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VPEIPQHST 334
+ + L GSDH PV+ L + VP + +
Sbjct: 289 ---------------------EANIQEGLMGSDHCPVFATLADVVTTGSEKVPLLNLVNP 327
Query: 335 PSLASR------------YLPIIRGV------QQTLVSVLMKREVAK-QGKSCKFSGSLP 375
P + R LP+ + +Q++ + K+ AK +S + S
Sbjct: 328 PGMVDRDGRRLREWHPKDVLPLSAKLIPEFDRRQSIRDMFTKKAGAKLSSQSSSLAPSSA 387
Query: 376 AESNSTGD----TEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSA 431
ES GD E N S+ ++ + G S+S+Q ++ R A
Sbjct: 388 TESTPEGDDLARLEQPGANTKTSVADHRLG--MSGASHSASSQ--------SLTGLRPEA 437
Query: 432 NVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRS-NVSHDDNNSITDT 490
+ + S SP AR ++ GQ +L+ FF S N +S T T
Sbjct: 438 PSTKRAAGSIDRSRPPSPKRNKNAR-SSRAGTKGQKTLQGFFQPSSTNRVVGRRDSDTTT 496
Query: 491 SLNVNNSVT----DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKK 546
S N N S T+ E P SH PV + E+
Sbjct: 497 SANANASAPFSCKQTTTQPSEPPLSHQAQLASPVDNLPL------------------ERS 538
Query: 547 GKRFLDKERNNV------ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 600
G +++ ++V A W ++ L + +P C+ H EPC++ K+PG GR F
Sbjct: 539 GGDWIEGLPDSVVFDPIQAKESWSKL--LGKRMLPRCE-HNEPCISLTTKRPGVNCGRSF 595
Query: 601 FVCARAEGPASNPEAN----CGYFKWA 623
++CAR GP+ E CG F W+
Sbjct: 596 YICARPLGPSGEKERGSEWRCGTFIWS 622
>gi|440633305|gb|ELR03224.1| hypothetical protein GMDG_01207 [Geomyces destructans 20631-21]
Length = 657
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 176/717 (24%), Positives = 280/717 (39%), Gaps = 164/717 (22%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R Q + + + + D +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 LRITTWNVNGIRNPFGYQPWREKKTFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+++FS K + GYSGVA + R + V P+ AEEG TG+L GS +
Sbjct: 63 DAYFSLP----KHKKGYSGVAIYTR-------SSVCSPIRAEEGITGILCPPGSS--QSF 109
Query: 116 EDFSKDELL-----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
D DE + +DSEGRC+I + F+L Y P + D R
Sbjct: 110 FDLPDDERIGGYPTISQYGDCTLDAATLDSEGRCLILEFPAFVLIGTYCPA--NRDETRD 167
Query: 159 QFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF------AKNEFRIW 212
F+L F +VL R L+ G+R+ + GDLN+ ID +A A+ F
Sbjct: 168 HFRLGFLNVLDARIRNLVNAGKRVILAGDLNVIREEIDTANAQERMRKEGVTAEEFFSAP 227
Query: 213 FRSM---LVESGGSF------------FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 257
R + LVE G + D+ R H RR +TCW A N+G+RI
Sbjct: 228 ARRLINHLVEHGNVYGERDECRARPVLTDICRKFHNRRRGMFTCWDQKKNARPGNFGSRI 287
Query: 258 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 317
D+I CA +D K W + + L GSDH
Sbjct: 288 DYI-CAS-------------------------LDCKDWFA------ESNIQEGLMGSDHC 315
Query: 318 PVYMCLGEVPEIPQHSTP--------------------------SLASRYLPII---RGV 348
PVY + + ++ T +++ LP R +
Sbjct: 316 PVYAVISDKVQLDGRETDIKDVMNAVGMFQDGFRQRDWTIKDLLPTSAKLLPEFDRRRNI 375
Query: 349 QQTLVSVLMKREVAKQGKS----CKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL 404
+ + + + QG+S K ES +TGD +E R L + +
Sbjct: 376 RDMFIKMPPATPLT-QGESLTSLAKVGSEPRPESPTTGDGCGVAE---RGLRDSFSTSPQ 431
Query: 405 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 464
GV S K + + ++ S Q P + +A + +
Sbjct: 432 PGVVKEKEGDTSSCGTGKVVNSTSSKGKRSAESLHLQRDQKRTKPANA-KALTSKNRQGM 490
Query: 465 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 524
Q +L+ FF ++ + N +N N + ++ S+H + P + +
Sbjct: 491 AQSTLQGFFTPKTQIPRGQPN------VNANTPPSSST-------GSNHSPSPYPRKELA 537
Query: 525 CSVHELHGVNSSVCSHDQDE-----KKGKRF-----LDKERNNVALL----EWRRIQQLM 570
+ + SH+ E K+ K +D E + + + W RI L
Sbjct: 538 LGPDQ--DTQEDLSSHNASEGYNAPKEAKYLSTPVDIDNEEDIIDPIITKESWSRI--LG 593
Query: 571 ETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
P C+ H +PC KKPG GR F++CAR GP+ E CG F W+
Sbjct: 594 TRIAPRCE-HNQPCRMLSTKKPGMNCGRSFYICARPLGPSGEKERGTQWRCGTFIWS 649
>gi|443896515|dbj|GAC73859.1| apurinic/apyrimidinic endonuclease [Pseudozyma antarctica T-34]
Length = 729
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 152/319 (47%), Gaps = 46/319 (14%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I +N+NGLR Q + L+ ADI CFQETK+ R++L + + Y
Sbjct: 1 MRITVWNINGLRTLKGYQPWYKLPDWEACLEHLGADIACFQETKMTRKQLTEAMCILPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+FF+ T GYSG T+ R ++P+ AE+G TG L
Sbjct: 61 NAFFNFHPTK-----GYSGTVTYVR-------KSASIPLKAEQGITGRLCDTPAPSNPAV 108
Query: 105 --ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
E G + +D +D EGR V+ D G F+LFNVY P + R+++K+
Sbjct: 109 PNEPIGHIPTDTRDDVEPQLWQALDDEGRAVVVDLGLFVLFNVYCPNETGPE--RLEYKM 166
Query: 163 QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-------GPD-FAKNEFRIWFR 214
++ L +R L+ GR + +VGD+NI ID CD G D F ++ R WF
Sbjct: 167 TYYQCLAERAHRLIAAGRDVMIVGDMNIIRDPIDHCDPEQSMRENGWDHFHQHPARAWFA 226
Query: 215 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHD 272
S L G F DV R HPERR+ +TCW + A NYG R+D+ L + L + D
Sbjct: 227 SFLAPQG-KFHDVGRMFHPERRKMFTCWNTLIDARPANYGVRLDYTLVSEGLLPWIKGAD 285
Query: 273 LQSHNFVTCHVNECDILID 291
+Q + + H C I ID
Sbjct: 286 IQPDIYGSDH---CPIYID 301
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 29/210 (13%)
Query: 428 RDSANVASHSTITQGSSNH-ISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNS 486
RDS+ AS + GS ++ D AR K GQ +L++FF + ++ S S
Sbjct: 475 RDSSAEASPTKRNGGSPKRAVASKGKDGARGKPAAGLKGQTNLQAFFGRPASSSSTAAGS 534
Query: 487 ITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKK 546
+ T+ S + + V S S D C + + + DQ
Sbjct: 535 DSGTTEQAPPSQPSDQV--DSVGASADAS------DAGCDMPDDDAIQEF---QDQASAS 583
Query: 547 GKRFLDKERNNV----ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFV 602
R E++ A L W I PLC+ H E C A V KPGP GR+F++
Sbjct: 584 PPRPAGSEQSATDRIGASLAWGAI--FSPLPPPLCR-HSEACRAWTVNKPGPNHGRKFWL 640
Query: 603 CARAEGPA----------SNPEANCGYFKW 622
C+R GP NPE C +F W
Sbjct: 641 CSRPVGPGYEKTGRAKGDVNPEYRCNFFLW 670
>gi|449302156|gb|EMC98165.1| hypothetical protein BAUCODRAFT_32166 [Baudoinia compniacensis UAMH
10762]
Length = 642
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 181/697 (25%), Positives = 276/697 (39%), Gaps = 147/697 (21%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R Q +Q S + D +DI+ QE K++R++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYQPWNQARSFPAMFDILGSDIVVMQELKIQRKDLRDDMVLLDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGSKIMEG 114
+ +FS K + GYSGV + R PV AEEG G+L + +G+ +
Sbjct: 61 DCYFSLP----KHKKGYSGVGIYTR-------NATCAPVKAEEGLLGVLPSPNGTPYCQL 109
Query: 115 LEDFS----KDEL---------LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
ED S EL + +D+EGRCV+ + F+L VY P + + +R F+
Sbjct: 110 PEDQSIGGYPSELQVAELGVDPMVLDAEGRCVMVEFPAFVLLGVYSPA--NSNGLRDDFR 167
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----------RI 211
F L R L G+R+ +VGDLN++ D A D K R
Sbjct: 168 YGFICALDCRIRNLSKAGKRVVLVGDLNVSRDERDTASALEDMRKAGITHEEYISTPNRR 227
Query: 212 WFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
F +LV+ G +D R+ HP+R YT W A N+G+RID +
Sbjct: 228 IFNQLLVDGEVVGERDDGRESGLLWDTCRAFHPQRERMYTHWEQKINARPGNFGSRIDFV 287
Query: 261 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
L C + ++ N + L GSDH PVY
Sbjct: 288 LV---CEEMQTWVKDAN-----------------------------IQEGLVGSDHCPVY 315
Query: 321 -------MCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVA--KQGKSCKFS 371
MC GE ++ P+ R + + V V + + ++ +S K
Sbjct: 316 ADFHDDVMCAGETVKLADAMNPAGVFSRGFRAREWRLSDVPVFSAKRLPEFERRRSIKSM 375
Query: 372 GSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY-------CSSSNQESEGEFTKTI 424
S P SL + + QGV+ S +ESE T T+
Sbjct: 376 FSTP------------------SLIKQSSTQVAQGVFDAERSFIPSPPQRESEEPHT-TV 416
Query: 425 ENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL--------GQLSLKSFFHKR 476
++ A+ A + Q SS + K +K+ +L GQ SLK FF
Sbjct: 417 PLSQEIASTAPTAHDNQSSSGVKRKASMATKLKSSKRQKLDGAAPSLKGQQSLKGFFQ-- 474
Query: 477 SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP--ESHHHSNKIPVTDYSCSVHELHGVN 534
S + D + T +S + + E P + N Y + H L ++
Sbjct: 475 SGRAEVDTTASTQSSTAIEPDAAGVLTTPETSPIKSTDGGINASATPAYDPTTH-LPDLD 533
Query: 535 SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI-----PLCKGHKEPCVARVV 589
S++ Q R + L R Q+ T P+C+GH EPC + +
Sbjct: 534 SNLPPSSQSSTT-----SPSRVSAKLAAVERTQRSWSTLFSRPVAPMCEGHDEPCKSMLT 588
Query: 590 KKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
KK G GR F++CAR GP+ N E C F W
Sbjct: 589 KKKGSNQGRSFWMCARPLGPSGNKEKGTQWRCPTFIW 625
>gi|302686738|ref|XP_003033049.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
gi|300106743|gb|EFI98146.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
Length = 697
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/403 (30%), Positives = 170/403 (42%), Gaps = 93/403 (23%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
MKI+T+N+NG+R + Q+ S + +LD DADIICFQE K RQ L D+ + G
Sbjct: 1 MKIMTWNINGIRT-IPQYHPWNGLKSHKDILDKLDADIICFQEMKSSRQNLPKDVAVPPG 59
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS---KI 111
Y SFFS + GYSGVA + VK ++ P E+ GL + S +I
Sbjct: 60 YTSFFSFPTK----KAGYSGVAIY--VKDQYT------PFKVEDHLCGLANATASDADRI 107
Query: 112 MEGLEDFSKDELLK-------------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
L + +D+EGR ++ D G F+L NVY P SE R+
Sbjct: 108 SPALSSYPMHRFADLDDDEDDPIDFKSLDAEGRTLVADFGLFVLINVYCPNDGSEAQERM 167
Query: 159 QFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA------------------ 200
++K+ F +L R L+ +GR + VVGDLN D C+
Sbjct: 168 KYKMDFHRMLSVRVRGLIDEGREVIVVGDLNAVSDVGDHCEGALTVRKIIDEARKEGQEV 227
Query: 201 GPDFAKNEF------RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
G A+ F R W R LVE GG DV + PER+ YTCW + A NYG
Sbjct: 228 GEKEAEEMFYDTMPARRWLRDSLVEHGGPLVDVCKRFWPERKGMYTCWNTKISARASNYG 287
Query: 255 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314
RID IL ++ + DI D K GS
Sbjct: 288 ARIDFILVT-------------PYLLPLIKHADIQPDVK-------------------GS 315
Query: 315 DHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 357
DH PV + + E+ ++ PS L + G + + LM
Sbjct: 316 DHCPVIVEFHD--EVDVNAIPSSVKANLSLPTGATRVSLQALM 356
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 569 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 616
L P C H EP V K G GR F+VC+R GP +P+
Sbjct: 617 LAAPPPPRCYVHDEPAREFTVNKKGENKGRAFYVCSRPVGPGYDKGRAERRREDVDPQYK 676
Query: 617 CGYFKW 622
C +F+W
Sbjct: 677 CDFFRW 682
>gi|388855206|emb|CCF51100.1| related to APN2-AP endonuclease, exonuclease III homolog [Ustilago
hordei]
Length = 760
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 153/319 (47%), Gaps = 46/319 (14%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I +N+NGLR Q + L+ ADI CFQE K+ R++L + + Y
Sbjct: 1 MRITVWNINGLRTLKGYQPWYRLPDWEACLEHLGADIACFQEIKMTRKQLTEPICILPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS-------- 107
+FF+ + GYSG T+ R V++P+ AE+G TG L +
Sbjct: 61 TAFFNFHPSK-----GYSGTVTYVR-------KNVSIPLKAEQGITGRLPVTSVSSNPSI 108
Query: 108 -----GSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
G + +D +D EGRCV+ D G F+LFNVY P + R+++K+
Sbjct: 109 PDNPIGCVPTDTHDDVDPQTWNALDEEGRCVVLDLGLFVLFNVYCPNETGPE--RLKYKM 166
Query: 163 QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD--------AGPDFAKNEFRIWFR 214
++ L +R L+ GR++ +VGD+NI ID CD F ++ R WF+
Sbjct: 167 TYYQCLAERAHRLIQSGRQVMIVGDMNIIRDPIDHCDPEQSMKEHGWEHFHQHPARSWFQ 226
Query: 215 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHD 272
S L G F DV R HP+RR+ +TCW + A NYG R+D+ L L + D
Sbjct: 227 SFLAPQG-KFHDVGRMYHPDRRKMFTCWNTLIDARPANYGVRLDYTLVTEGLLPWIKGAD 285
Query: 273 LQSHNFVTCHVNECDILID 291
+Q+ + + H C + +D
Sbjct: 286 IQADVYGSDH---CPVYVD 301
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 82/197 (41%), Gaps = 47/197 (23%)
Query: 453 DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH 512
+ ++ K+ S GQ SLK FF K ++ S + T T+ + S+ L++ + P S
Sbjct: 512 ETSKGKSAASLKGQTSLKGFFAKPTSSS-----TATPTASSTKTSI---DLAEADEPPSQ 563
Query: 513 HHSNKIPVTDYSCSVHELHG-----------------VNSSVCSHDQDEKKGKRFLDKER 555
S +I + S H+L + S+ S +E KR
Sbjct: 564 PKSIEITIVTDS---HQLEAHPSYSQQGEEEVSNQDLIESATESQAPEESAAKRV----- 615
Query: 556 NNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----- 610
A L W I T PLC+ H E C A V KPGP GR+F++C+R GP
Sbjct: 616 --GAFLAWGAI--FSPTPAPLCRNHSEACRAWTVNKPGPNHGRKFWLCSRPVGPGYEKSG 671
Query: 611 -----SNPEANCGYFKW 622
NPE C +F W
Sbjct: 672 RAKGDVNPEYRCNFFLW 688
>gi|170102771|ref|XP_001882601.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642498|gb|EDR06754.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 650
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 151/305 (49%), Gaps = 59/305 (19%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRK---LLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+T+N+NG+R + + +L+ +L+ +ADIICFQE K R L + + Y
Sbjct: 1 MRILTWNINGVRTLPQYHPWNTLKAHDDILNHLEADIICFQEMKSSRPALPKQVAVPPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE-----TSGSK 110
+SFFS ++GYSGVAT+ R +P+ AEEG +G+L+ T+ +
Sbjct: 61 DSFFSFPIR----KSGYSGVATYTR-------HSAVIPLKAEEGLSGVLQPKPPLTAAER 109
Query: 111 I--------------MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
I +EG D++ +DSEGR VI D G F+L NVY P +
Sbjct: 110 ISDSDNYPPNAETASIEGDLDYAD-----LDSEGRTVILDLGLFVLINVYCPNDGNGTEE 164
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN--------- 207
R ++K+ F +L+ R L+ +GR + VVGDLN A ID C+ AK
Sbjct: 165 RDKYKMDFHRLLEMRVVGLIKEGREVMVVGDLNACAAIIDHCEGHLMVAKGLAEGLQGEE 224
Query: 208 -----EFRIWFRSMLVE-----SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 257
+ R W R LV GG D+ R PER+ YTCW + A NYGTRI
Sbjct: 225 GFWGKDSRRWMRGFLVPEDEGMPGGFMIDIVRKLWPERKGMYTCWNTKISARDSNYGTRI 284
Query: 258 DHILC 262
D+IL
Sbjct: 285 DYILI 289
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 562 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----------- 610
EW + L P C H E V K G G+RFF+CAR GP
Sbjct: 559 EWTNL--LAPIQPPKCIVHGELAKELTVTKQGANKGKRFFICARPVGPGYDKGRGERLRE 616
Query: 611 -SNPEANCGYFKWA 623
+P C +FKW+
Sbjct: 617 HVDPHWKCDFFKWS 630
>gi|307752095|gb|ADN93066.1| putative DNA lyase [Arthroderma benhamiae]
Length = 588
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 179/668 (26%), Positives = 278/668 (41%), Gaps = 154/668 (23%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R G+ F + +
Sbjct: 1 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLPRQK-------KGIYVFSKCAA 53
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
+ AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 54 ----------IRAEEGVTGALCPPSSRTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 103
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ R L+ G+R+ + GD
Sbjct: 104 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 161
Query: 188 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVESGGS------------F 224
LN ID A K E+ RI+ R LV GS
Sbjct: 162 LNTCAGPIDSAPALERIRKGTETEEEYLSYPARRIFNR--LVRPVGSTGDTHDTETPPVL 219
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
D+ R HP R YTCW A NYG+RID+ILC+ +++S FV ++
Sbjct: 220 RDLCREFHPSRTGMYTCWNQKVNARPGNYGSRIDYILCS-------DNIRSW-FVESNIQ 271
Query: 285 ECDIL-----IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-VP------EIPQH 332
E I+ + Y+ +K + + +GSDH PVY + + VP I
Sbjct: 272 EGLIVCVKLELTYR--------SFKNLLISNEQGSDHCPVYASISDRVPFDGKDVHILDI 323
Query: 333 STPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC----- 387
P A GV+Q + ++ SG L E + + +D
Sbjct: 324 MNPKGA-----FDDGVEQPRSNKIVP---------LALSGRLIPEFDRRRNIKDMFRNHS 369
Query: 388 --SENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 445
N + ++ D+ + +S +S E KT + A SHST Q S+
Sbjct: 370 LSQTNSEVKMSTTTDTQAGSEIPGPASQIKSAQE-NKTAPVTMNHAPKRSHSTGAQAPSS 428
Query: 446 HISPFHVDRARKKAKKSQL---GQLSLKSFFHKRSN---VSHDDNNSITDTSLNVNNSVT 499
R ++K + S GQ +L FF VS ++ + +D+ V
Sbjct: 429 K-------RPKQKGRPSGARSNGQQTLVGFFKSEKTSRAVSEENATASSDSPQEAPAEVK 481
Query: 500 DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVA 559
T S E+ + +++ IP T + S NS V S E K F K
Sbjct: 482 ITPAS--ELASTAENNDSIP-TAVTASPD-----NSIVPSCSPTESWSKVFTRK------ 527
Query: 560 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN--- 616
+P C+GH E C++ V KKPG GR F++C R GP+ + E+
Sbjct: 528 -------------PVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTPW 574
Query: 617 -CGYFKWA 623
C F W+
Sbjct: 575 RCPTFIWS 582
>gi|29420517|dbj|BAC66502.1| DNA lyase [Isaria tenuipes]
Length = 611
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 164/669 (24%), Positives = 266/669 (39%), Gaps = 153/669 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++++FS + + GYSGVA +
Sbjct: 19 TFQAMFDILEADIVILQETKIQRKDLQDDMVLVPGWDAYFSLPQH----KKGYSGVAIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L E + + G ++ DE L
Sbjct: 75 R-------NATCAPILAEEGILGILCPPKSNTPYRELPEDRQIGGYPTLAQLNGDVDEAL 127
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRC+I + F+LF +Y P + D RI+F+ F L+ R L+ G+ + +
Sbjct: 128 -LDSEGRCLILEFPAFVLFGIYSPA--NRDESRIEFRQNFVEALEARIRNLITAGKEVIL 184
Query: 185 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W----FRSML---------------VESGGS 223
GDLNI + +D + K + W R +L G
Sbjct: 185 TGDLNIIRSEMDSSNIAEGLRKEGMTMDEWQSMPTRRILNQLLFDGTVIGPRDKAREDGV 244
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP RR +TCW + N G+RID+ILC+ D FV ++
Sbjct: 245 LWDICRCFHPTRRGMHTCWDTKRNTRPANLGSRIDYILCS--------DGIKDWFVDSNI 296
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 343
E L GSDH PVY + +
Sbjct: 297 QEG------------------------LMGSDHCPVYATMRDT----------------- 315
Query: 344 IIRGVQQ-TLVSVLMKREVAKQGKSCK---------FSGSLPAESNSTGDTEDCSENVDR 393
+++G ++ L V+ + + GK + S L E + + D N +
Sbjct: 316 VVKGGKEIALAEVVNPTNMFRDGKRIRNWEQRDALALSAKLIPEFDRRRNIRDMFTN--K 373
Query: 394 SLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHST-----ITQGSSNHI 447
+ + D G + V + + G+ T S V ++Q H
Sbjct: 374 AAHASFDRGNKTRSVARDAEEMKQLGKTTMPRLQSEGSVGVEREREREREWVSQ-LKRHA 432
Query: 448 SPFHVD-RARKKAK-------KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVT 499
P V A KK+K K GQ +L+ FF +S + D V
Sbjct: 433 GPVQVGIPANKKSKGSSETKTKVAGGQTTLQGFFKPKSTTTAD---------------VQ 477
Query: 500 DTSLSQE-EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 558
L+ +VP + P+ + S+ + +++ GK F E
Sbjct: 478 GGPLAGPCQVPGVPGRAQTPPLPASAASLQTPASWQTGTVKPVEEKSSGKVFDPIE---- 533
Query: 559 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN-- 616
A W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ + E +
Sbjct: 534 AKESWSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGPSGDKERDTE 590
Query: 617 --CGYFKWA 623
CG F W+
Sbjct: 591 WRCGTFIWS 599
>gi|29501198|dbj|BAC67542.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 161/669 (24%), Positives = 265/669 (39%), Gaps = 157/669 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 19 TFQAMFDILEADIVILQETKIQRKDLQDDMVLVPGWDVYFSLPQH----KKGYSGVAIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
+ P+ AEEG G+L E + + G ++ DE L
Sbjct: 75 K-------NATCAPILAEEGILGILCPPKSNTPYRELPEDRQIGGYPTLAQLSGDVDEAL 127
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRC+I + F+LF VY P + D RI+F+ F L+ R L+ G+++ +
Sbjct: 128 -LDSEGRCLILEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALEARIRNLVAAGKQVIL 184
Query: 185 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 223
GDLNI + +D + K + W +L + G
Sbjct: 185 TGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQSMPTRRILNQLLFDGSVIGPRDKAREDGV 244
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP RR +TCW + N G+RID+ILC+ D FV ++
Sbjct: 245 LWDICRCFHPTRRGMHTCWDTKRNTRPANLGSRIDYILCS--------DGIKDWFVDSNI 296
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 343
E L GSDH PVY + +
Sbjct: 297 QEG------------------------LMGSDHCPVYATMRD-----------------K 315
Query: 344 IIRGVQQT-LVSVLMKREVAKQGKSCK---------FSGSLPAESNSTGDTEDCSENVDR 393
+++G ++T L +L + + G+ + S L E + + D N +
Sbjct: 316 VVKGGKETSLAEILNPANMFRDGQRIRNWEQRDALALSAKLIPEFDRRRNIRDMFTN--K 373
Query: 394 SLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA-------SHSTITQGSSNH 446
+ + D G G + + E + T+ + +V ++Q + H
Sbjct: 374 AAHASFDRGNKTG--SGARDGEDMTQLGTTMPRLQSEGSVGVERERERERERVSQ-NKRH 430
Query: 447 ISPFHVD-RARKKAK-------KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSV 498
P V A KK+K K GQ +L+ FF +S + V
Sbjct: 431 AGPAQVGIPANKKSKGSSDTKTKVASGQTTLQGFFKPKSTATAGGQGGPLAGPCQVPGRA 490
Query: 499 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 558
L+ V S + P + +V + ++ GK F E
Sbjct: 491 QTPPLTTRTV------SRQTPTSSQMVTVKPV-----------EENSSGKVFDPIE---- 529
Query: 559 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN-- 616
A W ++ L +P C+ H+EPC++ V KKPG GR F++C R GP+ + E +
Sbjct: 530 AKESWSKL--LGRRVVPKCE-HEEPCISLVTKKPGVNCGRSFYICPRPVGPSGDKERDTE 586
Query: 617 --CGYFKWA 623
CG F W+
Sbjct: 587 WRCGTFIWS 595
>gi|358393553|gb|EHK42954.1| DNA lyase [Trichoderma atroviride IMI 206040]
Length = 598
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 162/653 (24%), Positives = 256/653 (39%), Gaps = 135/653 (20%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L D+V+ G++ +FS K + GYSGVA +
Sbjct: 24 TFQAMFDILEADIVVMQETKIQRKDLTDDMVLVPGWDVYFSLP----KHKKGYSGVAIYT 79
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG G+L + G E L + DEL
Sbjct: 80 R-------NATCAPIKAEEGILGVLCPPKSSTQFRNLPKDQQIGGYPRPEQLPG-NIDEL 131
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
L +DSEGRCVI + F+L VY P + D R+ F++++ L R L+ +G+++
Sbjct: 132 L-LDSEGRCVILEFPAFVLLGVYSPA--NRDESRVDFRMEYLQALDARVRNLISEGKQVV 188
Query: 184 VVGDLNIAPAAIDRCDAGPDFAKNEFRI--WFR-------SMLVESGG------------ 222
++GDLN++ + D + K I W + L+ G
Sbjct: 189 LMGDLNVSRSESDSTNVAETLRKEGLSIEEWMNVPSRRLFNHLIYGGTVQGDRDEGREQP 248
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 282
+ +D+ R HP R TCW + N G+RID++LC+ N +
Sbjct: 249 ALWDLCREFHPTREGMNTCWDTKRNTRPANNGSRIDYVLCS-------------NGLKDW 295
Query: 283 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA-SRY 341
E DI L GSDH PVY + +V P LA
Sbjct: 296 FTEADI-------------------QEGLMGSDHCPVYATIADVVTTDTEQVPLLAVMNP 336
Query: 342 LPIIRGVQQTLVSVLMKREVAKQGKSC-KFSGSLPAESNSTGDTEDCSENVDRS-----L 395
++ Q L MK + K +F T + SE +R+ +
Sbjct: 337 TSMVTRDGQRLREWHMKDVLPLSAKLIPEFDRRQSIRDMFTKSADQASELSNRAEYRLGM 396
Query: 396 NNYCDSGILQGVYCSSSNQESEGEFTKT-IENCRDSANVASHSTITQGSSNHISPFHVDR 454
++ DS L+ + S S + ++ D ++ S + S
Sbjct: 397 SDASDSSKLKPLTESRSEAPPRAKRAAGFVDPLSDGGSLKRSKKSNGAMSVNPSLMAEKN 456
Query: 455 ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 514
AR S GQ +L+ FF S+++ + NN D S S ES
Sbjct: 457 ARSTTTVSTKGQKTLQGFFKPVSSLAANRNNDGADWSGKSPGS------------ESQAK 504
Query: 515 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 574
N P++ L + + Q ++ + L RR+ +
Sbjct: 505 QNPRPIS--------LQTETNQIFDPVQAKESWSKLLG-----------RRV-------L 538
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
P C+ H EPC++ V KKPG G F++CAR GP+ E + CG F W+
Sbjct: 539 PRCE-HNEPCISLVTKKPGVNCGASFYICARPLGPSGEKEKDSEWRCGTFIWS 590
>gi|29501194|dbj|BAC67539.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 166/673 (24%), Positives = 264/673 (39%), Gaps = 165/673 (24%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 19 TFQAMFDILEADIVILQETKIQRKDLQDDMVLVPGWDVYFSLPQH----KKGYSGVAIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
+ P+ AEEG G+L E + + G ++ DE L
Sbjct: 75 K-------NATCAPILAEEGILGILCPPKSNTPYREQPEDRQIGGYPTLAQLSGDVDEAL 127
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRC+I + F+LF VY P + D RI+F+ F L+ R L+ G+++ +
Sbjct: 128 -LDSEGRCLILEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALEARIRNLIAAGKQVIL 184
Query: 185 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 223
GDLNI + +D + K + W +L + G
Sbjct: 185 TGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQSMPTRRILNQLLFDGSVIGPRDKAREDGV 244
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP RR +TCW + N G+RID+ILC+ D FV ++
Sbjct: 245 LWDICRCFHPTRRGMHTCWDTKRNTRPANLGSRIDYILCS--------DGIKDWFVDSNI 296
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 343
E L GSDH PVY + +
Sbjct: 297 QEG------------------------LMGSDHCPVYATMRD-----------------K 315
Query: 344 IIRGVQQT-LVSVLMKREVAKQGKSCK---------FSGSLPAESNSTGDTEDCSEN--- 390
+++G ++T L +L + + G+ + S L E + + D N
Sbjct: 316 VVKGGKETSLAEILNPANMFRDGQRIRNWEQRDALALSAKLIPEFDRRRNIRDMFTNKAA 375
Query: 391 ---VDRSLNNYCDSGILQG-----VYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG 442
DR N SG G + + +SEG E R+ V+ +
Sbjct: 376 HASFDR--GNKTGSGARDGEDMTQLGTAMPRLQSEGSVGVERERERERERVSQN------ 427
Query: 443 SSNHISPFHVD-RARKKAK-------KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 494
H P V A KK+K K GQ +L+ FF +S + V
Sbjct: 428 -KRHAGPAQVGIPANKKSKGSSDTKTKVASGQTTLQGFFKPKSTATAGGQGGPLAGPCQV 486
Query: 495 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 554
L+ V S + P + +V + ++ GK F E
Sbjct: 487 PGRAQTPPLTTRAV------SRQTPTSSQMVTVKPV-----------EENSSGKVFDPIE 529
Query: 555 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 614
A W ++ L +P C+ H+EPC++ V KKPG GR F++C R GP+ + E
Sbjct: 530 ----AKESWSKL--LGRRVVPKCE-HEEPCISLVTKKPGVNCGRSFYICPRPVGPSGDKE 582
Query: 615 AN----CGYFKWA 623
+ CG F W+
Sbjct: 583 RDTEWRCGTFIWS 595
>gi|159469514|ref|XP_001692908.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277710|gb|EDP03477.1| predicted protein [Chlamydomonas reinhardtii]
Length = 264
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 130/266 (48%), Gaps = 82/266 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++IV++NVNGLR+ ++ FGSL K L + +AD++C QE KL R +LK +L +ADG+ESFF+
Sbjct: 3 LRIVSWNVNGLRRVIAHFGSLDKFLSALEADVLCIQEHKLTRADLKRELALADGWESFFA 62
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T +GR
Sbjct: 63 FT----RGR--------------------------------------------------- 67
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFFHVLQKRWEFLLCQ 178
EL +D EGR VIT+HG +L NVYGP SE+ R FK+ FF LQ R + L
Sbjct: 68 -ELRALDGEGRVVITEHGALVLVNVYGPAITSEERAEERGAFKMTFFRALQHRLDGFLAA 126
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER-RE 237
GRR+ V+GD NI+PAA DR A P F P+R R+
Sbjct: 127 GRRLVVLGDFNISPAAADRAGATP-----------------------RTFEPHRPDRLRD 163
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
AYTCW +++GA N+G+RID IL A
Sbjct: 164 AYTCWNTSSGARVNNFGSRIDLILAA 189
>gi|367021856|ref|XP_003660213.1| hypothetical protein MYCTH_2298234 [Myceliophthora thermophila ATCC
42464]
gi|347007480|gb|AEO54968.1| hypothetical protein MYCTH_2298234 [Myceliophthora thermophila ATCC
42464]
Length = 644
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 173/704 (24%), Positives = 279/704 (39%), Gaps = 150/704 (21%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R S + + + + D+ +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 LRITTWNVNGIRNPFSYQPWRENRTFQAMFDTLEADIVVLQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ FFS R + GYSGVA + R + P+ AEEG TG L S
Sbjct: 63 DVFFSLPRY----KKGYSGVAVYTR-------SSKCCPIRAEEGITGALSPPNSSTK--F 109
Query: 116 EDFSKDELL----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
D D+ + +DSEGRC+I + F+L VY P + D R +
Sbjct: 110 RDLPADQQIGGYPLPEQLSNSIDEQTLDSEGRCIILEFPAFVLIGVYSPA--TRDETRTE 167
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF----- 209
++ F + R L+ G+++F+ GDLNI +D K EF
Sbjct: 168 YREAFIDAMDARVRNLVAMGKQVFLCGDLNIIRDELDAAGLPERLRKEGVTLEEFFATHS 227
Query: 210 RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 256
R + +L GG +D+ R HP R YTCW + A N+G R
Sbjct: 228 RRFLNQLLF--GGRVIGERQEGREQPVLWDLCREFHPTRAGMYTCWETRKNARPGNFGNR 285
Query: 257 IDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDH 316
ID++LC+ F+ ++ E L GSDH
Sbjct: 286 IDYVLCSSGIKDW--------FIDSNIQEG------------------------LLGSDH 313
Query: 317 APVYMCLGEVPEI-------------PQHSTPSLASR------YLPIIRGV------QQT 351
PVY + + ++ P + R LPI + +Q+
Sbjct: 314 CPVYATIADTVDVGGSQVHIEDIMNPPGMFKDGVRQREWCQKDLLPISAKLIPEFDRRQS 373
Query: 352 LVSVLMKREVAKQGKSCK----FSGSLPAESNSTGDTEDCSENVDRSLNNYCDS-GILQG 406
+ + K+ A + S S P ++ G +++ ++ S++ D
Sbjct: 374 IKDMFFKKASASAKTTSSPNTISSQSTPTDTVPGGGSDETQKDSTVSMSQAIDQPASTTT 433
Query: 407 VYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLG- 465
+ ++SN + K I R +A+ S + + +S R+ + K+ G
Sbjct: 434 LPNTASNNITSVPPQKPIPQKRQAASSTSPNRPQKKGKLALS-------RESSSKTTAGF 486
Query: 466 -QLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 524
Q SLK FF ++ ++ + + N ++T E PES T S
Sbjct: 487 SQSSLKGFFKPKTPTAN--ATAAIEAGDTTNPAITPDPNPSE--PESKQD------TSAS 536
Query: 525 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV-ALLEWRRIQQLMETSIPLCKGHKEP 583
NSS S + + F DK + + A W ++ L + +P C+ H E
Sbjct: 537 QGNSSQSTKNSSGDSVGESPRTESSFTDKVFDPIQAKDSWSKL--LGKRVVPKCE-HGED 593
Query: 584 CVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
C V KK G GR FF+CAR GP+ E C F W+
Sbjct: 594 CQMLVTKKAGVNCGRAFFMCARPLGPSGEKEQGTEFRCRTFIWS 637
>gi|358369104|dbj|GAA85719.1| DNA lyase Apn2 [Aspergillus kawachii IFO 4308]
Length = 626
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 160/368 (43%), Gaps = 88/368 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+I T+NVNG+R S + + D +ADI+ FQETK++R++L+ D+V+ G+
Sbjct: 3 FRITTWNVNGIRNPFSYEPWRGKRTFDAMFDILEADIVVFQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ +FS R + GYSGV + R P+ AEEG +G+L
Sbjct: 63 DCYFSLPRV----KKGYSGVVIYTR-------NSTCAPIRAEEGLSGMLCPPNSSVPFRE 111
Query: 105 -----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
+ G +E L F D +DSEGRCVI + F+L +Y P + D R
Sbjct: 112 LPENQQIGGYPTIEQLSQFDVDAAT-LDSEGRCVILEFPAFVLLGIYSPA--NRDESRDS 168
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEF 209
F+ F ++ R L+ G+R+FV GDLNI+ ID AG +F
Sbjct: 169 FRRNFIDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHAGEAIRKGTLTEDEFVSTHA 228
Query: 210 RIWFRSMLV--------ESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 258
R F +L E G D+ RS HP+R+ YTCW A NYG+RID
Sbjct: 229 RRVFNQLLSDGKVIGEREEGREQPVLHDICRSFHPDRKGMYTCWEQRINARPGNYGSRID 288
Query: 259 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 318
++LC+ D+Q F ++ E L GSDH P
Sbjct: 289 YVLCS-------LDMQDW-FCDSNIQEG------------------------LMGSDHCP 316
Query: 319 VYMCLGEV 326
VY E
Sbjct: 317 VYATFKET 324
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 562 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 617
+W ++ + PLC+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 555 DWSKL--FTKKRAPLCEGHQEPCISLTTKKPGVNCGRSFWICPRPLGPSGNKEKGTQWRC 612
Query: 618 GYFKWA 623
F WA
Sbjct: 613 PTFIWA 618
>gi|367041942|ref|XP_003651351.1| hypothetical protein THITE_2111508 [Thielavia terrestris NRRL 8126]
gi|346998613|gb|AEO65015.1| hypothetical protein THITE_2111508 [Thielavia terrestris NRRL 8126]
Length = 640
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 181/711 (25%), Positives = 283/711 (39%), Gaps = 167/711 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R Q + S + + D+ +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 LRITTWNVNGIRNPFGYQPWRENRSFQAMFDTLEADIVVMQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIME 113
+ +FS K + GYSGVA + R + P+ AEEG TG+L S +K E
Sbjct: 63 DVYFSFP----KYKKGYSGVAIYTR-------SSKCCPIRAEEGITGVLCPPNSSTKFRE 111
Query: 114 GLEDF-------------SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
D S DE +DSEGRCVI + F+L VY P + D R +F
Sbjct: 112 LPSDLQIGGYPKPGQLSDSIDEQT-LDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEF 168
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF------ 209
+ + + R L+ G+++F+ GDLNI + +D K +EF
Sbjct: 169 REAYIDAIDVRVRNLVAMGKQVFLCGDLNIVRSPLDTAGLAERLRKEGMTLDEFMSTPPR 228
Query: 210 ----RIWFRSMLVESGGS--------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 257
+ F +V GG +D+ R HP R +TCW + A N+G+RI
Sbjct: 229 RLLNHLVFGGTVV--GGRDEGREEPVLWDLCREFHPTRAGMFTCWETKKNARPGNFGSRI 286
Query: 258 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 317
D++LC+ F+ ++ E L GSDH
Sbjct: 287 DYVLCSSGIKDW--------FIDANIQEG------------------------LLGSDHC 314
Query: 318 PVYMCLGEV-----PEIPQHSTPSLASRYLPIIR-------GVQQTLVSVLMKREVAKQG 365
PVY +G+ +P + A + R + T ++ + + +
Sbjct: 315 PVYATIGDAVSFGDTNVPIEDVMNPAGMFKGGKRLREWSSKDLLPTSAKLIPEFDRRQSI 374
Query: 366 KSCKFSGSLPAESNSTG---DTEDCSENVDRSLNNYCDSGILQ--------------GVY 408
+ F S P+ ST D +D +D + N +GIL+ V
Sbjct: 375 REMFFKKSAPSAKTSTQAQMDNQDGRGVLD-AANGVKTTGILENNTTPGSDRNPTIASVS 433
Query: 409 CSSSNQESEGEFTKTIENCRDS-ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQL 467
SS+ S K++ R + ++ A +G N ++RA + Q
Sbjct: 434 VSSTTPNSAASPQKSVPTKRQAESSTAVRRPQKKGKGN------LNRAGSTNSTTGSSQS 487
Query: 468 SLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSC-S 526
+LK FF ++ V +D T E PE D C
Sbjct: 488 TLKGFFKPKTPVPDED-------------PPTPAQGVDESSPELK--------ADRDCPG 526
Query: 527 VHELHGV--NSSVCSHD-------QDEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPL 576
V G NS + D Q +K +K + + E W ++ L + +P
Sbjct: 527 VQTASGAESNSGTSTGDDVDNTLEQSQKPEGSSSEKVFDPIQAKESWGKL--LGKRVVPK 584
Query: 577 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
C+ H E C V KKPG GR FF+CAR GP+ + E C F W+
Sbjct: 585 CE-HGEDCQMLVTKKPGINCGRSFFMCARPLGPSGDKEQGTEFRCRTFIWS 634
>gi|395331650|gb|EJF64030.1| DNase I-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 686
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 184/430 (42%), Gaps = 95/430 (22%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + F + +LD +ADIICFQE K R L D+ + Y
Sbjct: 1 MRILSWNINGIRTLPKYHPWNTFKTCEGILDEINADIICFQEMKSSRANLPRDVALPGPY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE-----TSGSK 110
SFFS + KG GYSGVA + + P+ AEEG +G L+ ++ +
Sbjct: 61 HSFFSFP--TSKG--GYSGVAVYV-------DSRKLTPLKAEEGLSGKLQPNPPLSADER 109
Query: 111 IMEGLE-----DFSKDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
I D DE +DSEGR ++ D G F+L NVY P S++ R+
Sbjct: 110 ISPSYPSPHDVDLYADEEGAVPASFDALDSEGRALVLDFGLFVLVNVYCPAETSDE--RL 167
Query: 159 QFKLQFFHVLQKRWEFLLCQGRR-IFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIW 212
FK+ F +LQ+R L+ RR + V+GD+N+ A ID CD F + R W
Sbjct: 168 PFKMNFHLLLQERVRRLVEDERREVVVLGDINVCAAPIDHCDGHLPSTVAAFYDHPARAW 227
Query: 213 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
FR + G DV R HP+R+ +TCW + T A + NYG RID++L L
Sbjct: 228 FRRW-IGPDGPLTDVIRQCHPDRKGLFTCWDTRTQARETNYGARIDYVLVTRGLLP---- 282
Query: 273 LQSHNFVTCHVNECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCL------- 323
W G + L GSDH PVY+ L
Sbjct: 283 ------------------------------WIAAGDIQPALRGSDHCPVYVDLRDEITLA 312
Query: 324 -GEVPEI--PQHSTPSL------ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSL 374
GE + TP L A+RY G Q L + K AK + G
Sbjct: 313 SGETIALRDAMKQTPGLRDPPRTAARYWDEFAGRQMVLSAFFGKGAAAKTKTKTETDGDT 372
Query: 375 PAESNSTGDT 384
A S S T
Sbjct: 373 -ARSASPAPT 381
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYFKW 622
P C H EP V KPGP G+ F++CAR GP + C YFKW
Sbjct: 606 PRCTVHDEPARLYTVNKPGPNRGKTFYLCARPVGPGYDKGRGERLREEVDHRYRCNYFKW 665
Query: 623 A 623
A
Sbjct: 666 A 666
>gi|441675724|ref|XP_003276345.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nomascus
leucogenys]
Length = 479
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 42/263 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 60 LRVVSWNINGIRRPLQGAANQEPSNCAAVAVGRILDQLDADIVCLQETKVTRDALTEPLA 119
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 120 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 167
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 168 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 227
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 217
FK++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 228 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 287
Query: 218 VESG-------GSFFDVFRSKHP 233
G G F D +R P
Sbjct: 288 SNLGCQSASQVGPFIDSYRCFQP 310
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 428 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 476
>gi|29420515|dbj|BAC66501.1| DNA lyase [Cordyceps militaris]
Length = 624
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 167/670 (24%), Positives = 270/670 (40%), Gaps = 138/670 (20%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 19 TFQAMFDILEADIVVMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLED-------------FSKDELL 124
R P+ AEEG G+L S + E ED + DE L
Sbjct: 75 R-------NATCAPILAEEGVLGILCPPKSNTPYRELPEDQRIGGYPTSNQLSGNVDEAL 127
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 128 -LDSEGRCVVLEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALDARIRNLITAGKQVIL 184
Query: 185 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 223
GDLNI + +D + K + W F ++ E
Sbjct: 185 TGDLNIVRSELDSSNVAEGLIKEGMTMDEWQSLPARRIFNQLVFEGTVIGDRDTGREHAV 244
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D V ++
Sbjct: 245 LWDICRCFHPRRVGMHTCWDTKRNTRPANVGSRIDYILCS--------DGIKDWIVDSNI 296
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-------GEVPEIPQHSTPS 336
E L GSDH PVY + G + + PS
Sbjct: 297 QEG------------------------LMGSDHCPVYATMSDKVTKNGTEMTLAEAMNPS 332
Query: 337 LASRYLPIIRGVQQ--------TLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCS 388
+R +Q L+ +R ++ + K S +L G +
Sbjct: 333 NMFETGRRVRDWEQRDALRLSAKLIPEFDRRRNIREMFTSKASQTLLHPEKFGGQSLQI- 391
Query: 389 ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHIS 448
N D + +SG +SS ES F S ++ + +GS
Sbjct: 392 RNADMAAYTARNSGT-----TASSGAESTNCFGAAAPLV--SVGGTNNVNLQRGSQTKRR 444
Query: 449 PFHVDRA----RKKAKKS-----QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVT 499
P +A K+ K S + GQ +L+ FF ++ V+ +NNS+T + V
Sbjct: 445 PDGPAQAAVPTNKRGKNSSDTKTKTGQTTLQGFFKPKT-VASLENNSVTSVAEQVPAGSG 503
Query: 500 DTSLSQEEVPESH--HHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 557
+ +E P ++ + P S S SS+ + K ++ + +
Sbjct: 504 RVPVRAQEAPLANGVRRQTRTPSPIMSGS--------SSITTKGLSPAKVFDPIEAKES- 554
Query: 558 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 616
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ + E +
Sbjct: 555 -----WSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGPSGDKERDT 606
Query: 617 ---CGYFKWA 623
CG F W+
Sbjct: 607 EWRCGTFIWS 616
>gi|169595280|ref|XP_001791064.1| hypothetical protein SNOG_00377 [Phaeosphaeria nodorum SN15]
gi|111070752|gb|EAT91872.1| hypothetical protein SNOG_00377 [Phaeosphaeria nodorum SN15]
Length = 635
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 168/715 (23%), Positives = 266/715 (37%), Gaps = 178/715 (24%)
Query: 1 MKIVTYNVNGLRQRV-----SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R S+ + + D +AD++ QE K++R++L D+V+ G+
Sbjct: 2 VRITTWNVNGIRNPFGYKPWSEKRTFNAMFDILEADVVVMQELKIQRKDLTDDMVLVPGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS------ 109
+ +FS K + GYSGV + R V P+ AEEG G+L GS
Sbjct: 62 DCYFSLP----KHKKGYSGVGIYTR-------QSVCAPIRAEEGLLGVLCPPGSTTPYRE 110
Query: 110 ----------KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
+ D D +D+EGRC++ + F+LF VY P + + +R
Sbjct: 111 LPQDASIGGYPTAAQVADLGVDPA-ALDAEGRCLVIEFPAFVLFGVYSPA--NSNGLRDD 167
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG----------PDFAKNEF 209
F+ F L R L G+ + + GDLN++ ID A ++
Sbjct: 168 FRYGFLTALDTRIRNLNNMGKNVILTGDLNVSRDLIDTARAEDSMRSEGMTHTEYLSTPN 227
Query: 210 RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 258
R F +L+ +D+ R HP+R YT W A N+G+RID
Sbjct: 228 RRVFNQLLMNGQVPGERDEGREAPVLYDLCREFHPDREGMYTHWEQKINARPGNFGSRID 287
Query: 259 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 318
+LC+ I K W + + L GSDH P
Sbjct: 288 FVLCS--------------------------IAIKDWFKDS------DIQEGLMGSDHCP 315
Query: 319 VYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT--LVSVLMKREVAKQGKSCK------- 369
VY + E + S + + + Q+ L+ ++ + K G+ +
Sbjct: 316 VYALMKE-----KVSRGKMLHAGVADMEDTQEEFHLLDLMNPPGMYKNGRRQRDYNPAKD 370
Query: 370 ---FSGSLPAE----------SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQES 416
SG L E N E+ S + ++ + + + S++ Q
Sbjct: 371 MPSLSGKLLPEFTKRQNIRDMFNKKPSLENSSVSHSSNMGAHVVTAEAPAIPLSAAIQSP 430
Query: 417 EGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLG----------- 465
+ T ++E R ++ S K K+S+LG
Sbjct: 431 DKVSTPSLETFRSNSTSNKSGLSIPLKSPEKRRASSTTPMKSGKRSRLGLPNTLNGTHPM 490
Query: 466 ---QLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 522
Q SLK FF R+N S D+ QEE P +P TD
Sbjct: 491 AKGQQSLKGFFQSRTNAS-------------------DSKPGQEETP-------LVPFTD 524
Query: 523 YSCSVHE----------LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMET 572
+ E G +SS +H Q + + KE W ++ +
Sbjct: 525 AAVETAENRTSLSQTSNTKGPSSSPPAHVQTDPLASQEASKE-------GWTKL--FSKK 575
Query: 573 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
P C+GH EPC+ KKPG GR+F++C+R GP+ E C F WA
Sbjct: 576 PSPRCEGHAEPCIMLTTKKPGVNCGRQFWMCSRPIGPSGQKETGTQWRCATFIWA 630
>gi|389745395|gb|EIM86576.1| DNase I-like protein [Stereum hirsutum FP-91666 SS1]
Length = 677
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 166/367 (45%), Gaps = 92/367 (25%)
Query: 1 MKIVTYNVNGLRQRVSQ------FGSLRKLLDSFDADIICFQET-----KLRRQELKSDL 49
M+I+T+N+NG+R V Q F + ++LD+ ADI+CFQ + K RQ L ++
Sbjct: 1 MRILTWNLNGVRT-VPQYYPWNTFKTWGEILDALHADILCFQGSSSIAMKTTRQALTRNI 59
Query: 50 VMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE---- 105
+ + Y+SFFS + GYSGVA + +ST ALP+ AEEG +GL++
Sbjct: 60 AVPENYDSFFSLP----TAKGGYSGVAVY-------TSTHTALPLKAEEGLSGLIQPRPP 108
Query: 106 ----------------------TSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
S+ + +LL +DSEGR ++ D G F+L
Sbjct: 109 LSPHERISSTYPSAHTMSLMPSNPTSEDLNPTTQSKPTDLLSLDSEGRALVLDFGLFVLI 168
Query: 144 NVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-CQGRRIFVVGDLNIAPAAIDRCDAGP 202
N+Y P S+ R+ FKL + +L++R L+ + R + VVGD+N+ ID D
Sbjct: 169 NLYCPNETSD--ARLPFKLNYHRMLEERVRILVEREEREVIVVGDINVCAEPIDHGDGHL 226
Query: 203 DFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 257
K F R WF L + G DV R P+R+ YTCW G + NYG+RI
Sbjct: 227 PSCKEGFWEPPCRAWFYEWL-DPKGKMIDVVRRFWPDRKGMYTCWNQKIGGRESNYGSRI 285
Query: 258 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK-GGMSTRLEGSDH 316
D+IL PG P K G + ++GSDH
Sbjct: 286 DYILVT---------------------------------PGLMPWIKHGDIEPTIKGSDH 312
Query: 317 APVYMCL 323
PVY+ L
Sbjct: 313 CPVYVDL 319
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYFKW 622
P C H EP V KPGP G+ FF+C+R GP + + C +FKW
Sbjct: 598 PKCIVHGEPTKELRVNKPGPNKGKTFFICSRPVGPGYDKGRMERLRDEVDHQWRCNFFKW 657
Query: 623 A 623
+
Sbjct: 658 S 658
>gi|169850286|ref|XP_001831840.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
gi|116507128|gb|EAU90023.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
Length = 609
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 169/363 (46%), Gaps = 88/363 (24%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRK---LLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+++T+N+NG+R + + +L+ +L+ ++DIICFQE K R+ L ++ + +
Sbjct: 1 MRLLTWNINGVRTLPQYHPWNTLKTFDDILNHLESDIICFQEMKSGRKLLTQEVAVPPSF 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS-KIMEG 114
+SFFS +TGYSGVAT+ R K VA+P+ AEEG +G+L+ E
Sbjct: 61 DSFFSFPIK----KTGYSGVATYTRSK-------VAVPLKAEEGLSGILQPKPPLAPEER 109
Query: 115 LEDFS-----------------KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVR 157
+ +++ + + +DSEGR ++ D G F+L N Y P + R
Sbjct: 110 ISNYATYPPNLLDDDMHDADDDRLDYKNLDSEGRAIVVDMGLFVLINTYCPNDGTGTEER 169
Query: 158 IQFKLQFFHVLQKRWEFLLCQGRR-IFVVGDLNIAPAAIDRCDA-------------GPD 203
FK+ + +L+ R L+ + +R + VVGDLN A ID C+ G +
Sbjct: 170 EAFKMDYHRLLETRVRGLIEKEKREVIVVGDLNACAAVIDHCEGELMIKKGQAMGLEGEE 229
Query: 204 -FAKNEFRIWFRSMLVE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
F E+R W R LV+ +GG+ D+ R P+R YTCW + A + NYGTRID
Sbjct: 230 GFWGKEYRRWIRDWLVKEDGTGGTLVDITRKLWPDREGMYTCWNTKISARETNYGTRIDF 289
Query: 260 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMST--RLEGSDHA 317
IL PG P W T ++GSDH
Sbjct: 290 ILVT---------------------------------PGLVP-WIKASDTLPNIKGSDHC 315
Query: 318 PVY 320
PVY
Sbjct: 316 PVY 318
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 569 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 605
L P CK H EP V KPGP G+RFF+C+R
Sbjct: 566 LAPIQPPKCKAHGEPAKEYTVNKPGPNKGKRFFICSR 602
>gi|342878043|gb|EGU79454.1| hypothetical protein FOXB_10039 [Fusarium oxysporum Fo5176]
Length = 593
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 163/661 (24%), Positives = 250/661 (37%), Gaps = 137/661 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 3 MFEILEADIVVMQETKIQRKDLQDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 55
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L + K D +D+ + +D
Sbjct: 56 ----NSKCAPIRAEEGVTGIL--TAPKSTTRYRDLPEDQQIGGYPRPDQLDGIIDEATLD 109
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCVI + F+LF VY P + D R F+ FF L+ R L+ G+++ + GD
Sbjct: 110 SEGRCVILEFPGFVLFGVYSPA--TRDETRDDFRTGFFQALEVRIRNLVAAGKQVILTGD 167
Query: 188 LNIAPAAIDRCDAG----------PDFAKNEFRIWFRSMLVESG-----------GSFFD 226
LN+ + +D + D+ R F ++ E +D
Sbjct: 168 LNVVRSELDSTNVSETLRKEGIDLSDWMNAPVRRIFNQLIFEGSVLGERDQGREKPVLWD 227
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+ R HPER TCW + N G+RID++LC+ D F ++ E
Sbjct: 228 LCRCFHPERVGMNTCWDTKRNTRPANNGSRIDYVLCS--------DGIKSWFNYSNIQEG 279
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP-II 345
L GSDH PV+ L + + L P +
Sbjct: 280 ------------------------LMGSDHCPVFANLSDKVTVGDKECALLEMMNPPGMF 315
Query: 346 RGVQQ----------TLVSVLMKREVAKQGKSCKFS--GSLPAESNSTGDTEDCSENVDR 393
G ++ L S L+ +Q F+ + P E T +
Sbjct: 316 NGDERLRDWSPKDHLPLSSKLIPEFDRRQSIRDMFTKKAAPPREPTRT-------DTPAE 368
Query: 394 SLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVD 453
LNN S S +N S +T + + SA+ S + PF
Sbjct: 369 PLNNGNSS-----ASGSPTNASSTPRLGETTNSTKLSASQPSSKRPGTAADTTSRPFKKT 423
Query: 454 R----ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 509
+ A K GQ +L+ FF ++ + D + + N S T + P
Sbjct: 424 KSFTGANDTKSKVAQGQRTLQGFFKPKAPAAQDGKAEL--VAANSTPSTTKKPAGSGKAP 481
Query: 510 ESHHHSNKIP---VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 566
S + P T+ S L G +D R D A W ++
Sbjct: 482 ASAQRLSNTPQATPTEKSSPTVPLRG---------KDPDPSDRVFDPIE---AKESWSKL 529
Query: 567 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
L + P C+ H EPC++ KKPG GR F++C R GP+ E N C F W
Sbjct: 530 --LGKRVAPRCE-HDEPCISFTTKKPGVNCGRMFYICPRPLGPSGEKERNSEWRCSTFIW 586
Query: 623 A 623
+
Sbjct: 587 S 587
>gi|339236551|ref|XP_003379830.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Trichinella spiralis]
gi|316977461|gb|EFV60557.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Trichinella spiralis]
Length = 462
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 137/275 (49%), Gaps = 32/275 (11%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVNGLR V ++K L S DIIC QETKL L S L + DG++S+F+
Sbjct: 1 MKITTWNVNGLRSIVD----IQKTLLSLGCDIICLQETKLTYDTLDSSLALIDGFDSYFA 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--GSKIMEGLEDF 118
+T R GYSGVAT+C KS FS P F L + L F
Sbjct: 57 FCQT----RRGYSGVATYC--KSDFS------PDLVFNNFHDLYRQFQFAHPNRQHLGIF 104
Query: 119 SKDELLKIDSEGRCVITDHG--------HFILFNVYGPRADSEDTVRIQFKLQFFHVLQK 170
D +D+EGR + T H + + N+Y PR D E R F+L F +LQ
Sbjct: 105 --DNFDTLDNEGRMLATRHKLTNCNNAEYLFILNIYCPRVDPEQMDRQNFRLAFLKLLQH 162
Query: 171 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES----GGSFFD 226
E LL G + ++GD+N+ ID CD +F +E RIW L ++ G D
Sbjct: 163 CTECLLNSGNYVLILGDMNLCHKRIDHCDPDQEFDTDEARIWLCEFLYDTDKNADGKMVD 222
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
++R +P + +TCW S A N+GTRID+IL
Sbjct: 223 LYRIHYPNKGRMFTCWNSQKRARILNFGTRIDYIL 257
>gi|336463554|gb|EGO51794.1| hypothetical protein NEUTE1DRAFT_149501 [Neurospora tetrasperma
FGSC 2508]
Length = 654
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 168/686 (24%), Positives = 268/686 (39%), Gaps = 146/686 (21%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+++ + D+ +ADI+ QETK++R++L+ D+V+ G++ +F+ + GYSGVA +
Sbjct: 26 TVKAMFDTLEADIVVIQETKIQRKDLRDDMVLVPGWDVYFNLPTY----KKGYSGVAIYT 81
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL--------------- 124
R + P+ AEEG TG+L S D D+ +
Sbjct: 82 R-------SSKCCPIRAEEGITGVLCPPNSSTK--FRDLPADQQIGGYPTPGQLSSDIDE 132
Query: 125 -KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
++DSEGRCVI + F+L VY P + D RI+F+ F + R L+ G+ +F
Sbjct: 133 AQLDSEGRCVILEFPAFVLIGVYSPA--TRDETRIEFRQAFIDAMDARVRNLVSMGKEVF 190
Query: 184 VVGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------G 222
+ GDLNI +D K + F + +V G
Sbjct: 191 LCGDLNIIRNEMDTAGLPEQLKKEAMTLDQFISTPSRRFLNQIVFGGRVIGEPDEGREKP 250
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 282
+D+ R HP+R YTCW + A N+G+RID++LC+ FV +
Sbjct: 251 VLWDLCREFHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGIKDW--------FVDAN 302
Query: 283 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 342
+ E L GSDH PVY + + + S +
Sbjct: 303 IQEG------------------------LLGSDHCPVYATISD--------SVSRDGVII 330
Query: 343 PIIRGVQQTLVSVLMKREVAKQGKSC-KFSGSLPAESNSTGDTED------CSENVDRSL 395
PI + + +R+ K C S L E + +D N +S
Sbjct: 331 PITDIMNPEGMFKNGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKKKTPSNTPKSA 390
Query: 396 NNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 454
DS I SS + +T S S T+ + + SP R
Sbjct: 391 TPAADSQEIPDSPNTSSITVNATTVLQETASFASSPKQWLSQSAATEPALSQTSPVPKRR 450
Query: 455 ARKKA----------------KKSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTS 491
A + A S+ G Q +L FF ++ V+ D+ + + +
Sbjct: 451 AEQPAPYIRPPKKAKAALAKQPSSKTGPGPSQSTLMGFFKAKTPTPTVNPDERHGPINGN 510
Query: 492 LNVNNSVTDTSLSQEEV------PESHHHSNKIPVTDYSCSVHELH----GVNSSVCSHD 541
+ + +T+L E P+ + D H+ + G NS+V
Sbjct: 511 NHSPATTAETALRNEPFTAKGSQPKQSFEVDNFEERDEHAVEHKTNPTPYGENSTVM--- 567
Query: 542 QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 601
+DE KGK D +N + W ++ L + +P C+ H E C + V KKPG GR F+
Sbjct: 568 EDEGKGKTIFDPIQNRES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFY 621
Query: 602 VCARAEGPASNPEAN----CGYFKWA 623
+CAR GP+ N E C F W+
Sbjct: 622 MCARPLGPSGNKETGTEFRCKTFIWS 647
>gi|390600243|gb|EIN09638.1| DNase I-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 567
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 169/382 (44%), Gaps = 86/382 (22%)
Query: 14 RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYS 73
R + + +L + DAD+ICFQE K R + ++ + Y++F S + + GYS
Sbjct: 5 RWNTYKDFEGILMALDADVICFQELKSCRANTERNVAVPGLYDAFLSYPVS----KGGYS 60
Query: 74 GVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSK-------IMEGLE 116
GV F +++E A+P+ AEEG +G L S SK + E
Sbjct: 61 GVGVF-------TNSENAMPLKAEEGLSGTLPGNTQLAPEDRISASKPSADDMTLYPDEE 113
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
+ +L+ +DSEGR ++ D G F+L NVY P S+ R+ FK+ + +L++R L+
Sbjct: 114 GNTPSDLIGLDSEGRALMVDFGLFVLINVYCPNETSD--ARLPFKMNYHLMLEERVRELV 171
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+GR + VVGD+NI +D CD F + R WF + L + G DV R
Sbjct: 172 GEGREVMVVGDMNICATPLDHCDGHLPSNAATFWDHPARAWFHNWL-DPNGLMIDVLRRF 230
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
PER+ YT W G + NYGTR+D+IL
Sbjct: 231 WPERKGMYTVWNQKIGGRETNYGTRVDYILVT---------------------------- 262
Query: 292 YKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGEVPEIPQHS--------------TPS 336
PG P K + ++GSDH P+++ L ++ +P TP
Sbjct: 263 -----PGLLPWVKAADIEASVKGSDHCPIWVDLHDI--LPGQDIKLRDSLKMNQFRVTPR 315
Query: 337 LASRYLPIIRGVQQTLVSVLMK 358
LA++Y P G Q L S K
Sbjct: 316 LAAKYWPEFSGKQTLLSSFFGK 337
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 567 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPE 614
Q +P C H E V KPGP G+ F++C+R GP NPE
Sbjct: 486 QMFAPIPVPRCTVHNELAKEWTVNKPGPNKGKTFYLCSRPVGPGYDKGRGERLREEVNPE 545
Query: 615 ANCGYFKWA 623
C +FKWA
Sbjct: 546 YRCNFFKWA 554
>gi|148675568|gb|EDL07515.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_c [Mus musculus]
Length = 543
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 159/336 (47%), Gaps = 64/336 (19%)
Query: 45 LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
L L + +GY S + + R+GYSGVATFC+ + A PVAAEEG +G+
Sbjct: 82 LTEPLAIVEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVF 129
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSE 153
T I +++F+++EL +DSEGR ++T H L NVY P AD
Sbjct: 130 ATLNGDIGCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPG 189
Query: 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRI 211
R+ FK++F+ +LQ R E LL G + ++GDLN A ID CDA F ++ R
Sbjct: 190 KPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRK 249
Query: 212 WFRSMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 264
W +L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 250 WMDGLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--- 306
Query: 265 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 324
+ ++ID + + + GSDH PV L
Sbjct: 307 -------------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL- 337
Query: 325 EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 360
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 338 NVSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 373
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 450 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 509
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 400 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 458
Query: 510 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 569
NK+P + ++KG+R W+ +
Sbjct: 459 TMLEEKNKVP---------------------ESKDEKGER----------TAFWKSMLS- 486
Query: 570 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 487 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 540
>gi|385145211|emb|CCD57796.1| putative DNA lyase apn2 protein [Neurospora sublineolata]
Length = 616
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 170/673 (25%), Positives = 260/673 (38%), Gaps = 137/673 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ ADI+ QETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDTLGADIVVMQETKIQRKDLRDDMVLVPGWDVYFSLP----KYKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
+ P+ AEEG TG+L S D D+ + ++D
Sbjct: 54 ----SSKCCPIRAEEGITGVLCPPNSSTK--FRDLPADQQIGGYPTSGQLSSDIDEAQLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCVI + F+L VY P + D R +F+ F + R L+ G+ +F+ GD
Sbjct: 108 SEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVSMGKEVFLCGD 165
Query: 188 LNIAPAAIDRCDAG-PDFAKNEFRIW----------FRSMLVESG------------GSF 224
LNI +D AG P+ K E F + +V G
Sbjct: 166 LNIIRNEMDT--AGLPERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGREKPVL 223
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
+D+ R HP R YTCW + A N+G+RID++LC+ FV ++
Sbjct: 224 WDLCREFHPRRPGMYTCWETRKNARPGNFGSRIDYVLCSSGI--------KGWFVDANIQ 275
Query: 285 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 344
E L GSDH PVY +G+ T S +PI
Sbjct: 276 EG------------------------LLGSDHCPVYATIGD--------TVSKDGTTIPI 303
Query: 345 IRGVQQTLVSVLMKREVAKQGKSC-KFSGSLPAE--------------SNSTGDTEDCSE 389
V + +R+ K C S L E D +D S+
Sbjct: 304 TDIVNPEGMFKDGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKRKTPAADNQDTSD 363
Query: 390 NVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISP 449
+ S S LQ S+ + + + T E + Q +S+
Sbjct: 364 PPNTSSTTAHTSTALQEAASSAPSPKQSLSQSTTTEPALSQTSPGPKRRAEQPASSIRPQ 423
Query: 450 FHVDRARKKAKKSQLG----QLSLKSFFHKRSNVSHDDNNSITDTSLNVNN----SVTDT 501
V A K S+ G Q +L FF ++ N + +N NN ++ +T
Sbjct: 424 KKVKAALSKQPSSKTGPGPSQSTLMGFFKPKTPTPT-LNPEERPSPINGNNHSLATIAET 482
Query: 502 SLSQEEVPESHHHSNK-IPVTDYSCSVHELHGVNSSVCSHD------QDEKKGKRFLDKE 554
+ E P + D + +S H +DE KGK D
Sbjct: 483 ATRNEPSPAKGSQPKRSFEADDIEERDEDAVEPKTSPAKHKATDTAMEDEGKGKTVFDSI 542
Query: 555 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 614
+N + W ++ L + +P C+ H + C + V KKPG GR F++CAR GP+ + E
Sbjct: 543 QNKES---WSKL--LGKRVVPKCE-HGDDCQSLVTKKPGINCGRSFYMCARPLGPSGDKE 596
Query: 615 AN----CGYFKWA 623
C F W+
Sbjct: 597 TGTEFRCKTFIWS 609
>gi|212544628|ref|XP_002152468.1| DNA lyase Apn2 [Talaromyces marneffei ATCC 18224]
gi|210065437|gb|EEA19531.1| DNA lyase Apn2 [Talaromyces marneffei ATCC 18224]
Length = 607
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 151/345 (43%), Gaps = 87/345 (25%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
S + + +ADI+ FQETK++R++L+ D+V+ G++ +FS R + GYSGV +
Sbjct: 16 SFNSMFNILEADIVIFQETKIQRKDLRDDMVLVPGWDCYFSLPRH----KKGYSGVVIYT 71
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R EV P+ AEEG TGLL + G ME L D D
Sbjct: 72 R-------NEVCAPIRAEEGITGLLCPPSTTTPYRHLPDDQQIGGYPSMEQLNDLQIDPA 124
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
+ +D EGRCVI + F+LF +Y P A D R F+ F +L R L+ G+R+
Sbjct: 125 V-LDCEGRCVILEFPAFVLFGLYCPAA--RDETRDHFRQGFITLLDARIRNLVAMGKRVI 181
Query: 184 VVGDLNIAPAAID--------RCDAGPD--FAKNEFRIWFRSMLVESGGS---------- 223
V GDLNI+ ID R G + F R F + LVE
Sbjct: 182 VTGDLNISAGEIDSAHLTEAIRKGTGSEDEFVSGPVRRVF-NQLVEGAKVIGKRDSGREV 240
Query: 224 --FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 281
D+ RS HP+RR YTCW + A NYG RID+IL +
Sbjct: 241 PVLHDICRSFHPDRRGMYTCWETRVNARPGNYGARIDYILSS------------------ 282
Query: 282 HVNECDILIDYKRWKPGNAPRW-KGGMSTRLEGSDHAPVYMCLGE 325
+D K W W +G + L GSDH PVY E
Sbjct: 283 --------LDIKDW-------WSEGNIQEGLMGSDHCPVYAVFKE 312
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 618
W ++ + ++P C+ H+EPC+ KK G GR F++C+R GP E C
Sbjct: 538 WSKL--FTKKAMPRCEDHQEPCIMLTTKKAGINCGRSFWMCSRPLGPTGQSEKGTQWRCK 595
Query: 619 YFKWA 623
F WA
Sbjct: 596 TFIWA 600
>gi|385145200|emb|CCD57787.1| putative DNA lyase apn2 protein [Neurospora africana]
Length = 627
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 169/683 (24%), Positives = 267/683 (39%), Gaps = 146/683 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ +ADI+ QE K++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDTLEADIVVMQEIKIQRKDLRDDIVLVPGWDVYFSLP----KYKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
+ P+ AEEG TG+L S D D+ + ++D
Sbjct: 54 ----SSKCCPIRAEEGITGVLCAPNSSTK--FRDLPADQQIGGYPTPGQLSSDIDEAQLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCVI + F+L VY P + D R +F+ F + R L+ G+ +F+ GD
Sbjct: 108 SEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVSMGKEVFLCGD 165
Query: 188 LNIAPAAIDRCDAG-PDFAKNEFRIW----------FRSMLVESGGS------------- 223
LNI +D AG P+ K E F + +V G
Sbjct: 166 LNIIRNEMDT--AGLPERLKKEAMTLDDFISIPSRRFLNQIVFGGXXXXRVIGEPDGGRE 223
Query: 224 ---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 280
+D+ R HP+R YTCW + A N+G+RID++LC+ FV
Sbjct: 224 KPVLWDLCRELHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGI--------KDWFVD 275
Query: 281 CHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR 340
++ E L GSDH PVY +G+ + S
Sbjct: 276 ANIQEG------------------------LLGSDHCPVYATIGD--------SVSKDGV 303
Query: 341 YLPIIRGVQQTLVSVLMKREVAKQGKSC---------KFSG---------------SLPA 376
+PI V + +R+ K C +F G + P
Sbjct: 304 TIPITDIVNPEGMFENGQRQREWSQKDCLPTSAKLIAEFDGRQSIKDMFFKKKTPSTTPP 363
Query: 377 ESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASH 436
+ D++D + S LQG S+S + + T E +
Sbjct: 364 SATPAADSQDTFYPPNTSSITVNAIAALQGAASSASLPKQLLSQSTTTEPALSQTSPVPK 423
Query: 437 STITQGSSNHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITD 489
Q SS P A K S+ G Q +L FF ++ V+ D+ + +
Sbjct: 424 RRAEQPSSYIRPPKKAKAALAKQPSSKNGPGPSQSTLMGFFKPKTPTPTVNPDERLAPVN 483
Query: 490 TSLNVNNSVTDTSLSQEEVPESH----HHSNKIPVTDYSCSVHELHGVNSSVC-SHDQDE 544
+ + ++ +T+ E P + ++ I D H+ V + +DE
Sbjct: 484 GNNHSPATIAETTSRNEPSPANQPKRPFEADDIEEWDEDAVEHKTSPTTYRVTNTAMEDE 543
Query: 545 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 604
KGK D +N + W ++ L + +P C+ H E C + V KKPG GR F++CA
Sbjct: 544 GKGKTVFDPIQNKES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYMCA 597
Query: 605 RAEGPASNPEAN----CGYFKWA 623
R GP+ + E C F W+
Sbjct: 598 RPLGPSGDKETGTEFRCKTFIWS 620
>gi|336264660|ref|XP_003347106.1| hypothetical protein SMAC_05405 [Sordaria macrospora k-hell]
gi|380093801|emb|CCC08765.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 641
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 170/712 (23%), Positives = 281/712 (39%), Gaps = 171/712 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I T+N + + + + D+ + DI+ QETK++R++L+ D+V+ G++ +FS
Sbjct: 3 LRITTWN--------GENRTFQSMFDTLEVDIVVMQETKIQRKDLRDDMVLVPGWDVYFS 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
K + GYSGVA + R + PV AEEG TG+L S D
Sbjct: 55 LP----KYKKGYSGVAIYTR-------SSKCCPVRAEEGITGVLCPPNSSTK--FRDLPA 101
Query: 121 DELL----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
D+ + ++DSEGRCVI + F+L VY P + D R +F+ F
Sbjct: 102 DQQIGGYPTPGQLSSDVDEAQLDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAF 159
Query: 165 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-PDFAKNEFRIW----------F 213
+ R L+ G+ +F+ GDLNI +D AG P+ K E F
Sbjct: 160 IDAMDARVRNLIAMGKEVFLCGDLNIIRNEMDT--AGLPERLKKEAMTLDDFISTPSRRF 217
Query: 214 RSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
+ +V G +D+ R HP R YTCW + A NYG+RID++L
Sbjct: 218 LNQIVFGGRVIGEPDEGREKPVLWDLCREFHPRRPGMYTCWETRKNARPGNYGSRIDYVL 277
Query: 262 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 321
C+ FV ++ E L GSDH PVY
Sbjct: 278 CSSGI--------KDWFVDANIQEG------------------------LLGSDHCPVYA 305
Query: 322 CLGE--------VP------------------EIPQHSTPSLASRYLPIIRGVQQTLVSV 355
+ + +P E Q ++++ +P +Q++ +
Sbjct: 306 TISDTVTRDGITIPITDLMNPEGMFKDGQRQREWSQKDCLPISAKLIPEF-DRRQSIKDM 364
Query: 356 LMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQE 415
K+ K + P + + D +D + + S + LQ S+ + +
Sbjct: 365 FFKK---------KTPSTTPKSATAAADGQDTIDPTNTSSTTANATNALQEAASSAPSLK 415
Query: 416 SEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKS---- 471
+ + T E ++ S I + + +P R KKAK + Q S KS
Sbjct: 416 TSLSQSTTTEPA-----LSRTSPIPKRRAEQPAP--AARPSKKAKATLSKQPSSKSVPGP 468
Query: 472 -------FFHKR---SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE------SHHHS 515
FF + +V ++ + D + ++ DT+ PE S +
Sbjct: 469 SQSTLMGFFKPKIPTPSVKAEERPATADVNNYSPETIADTTTGDRLFPEKAGQPSSSFQT 528
Query: 516 NKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIP 575
+ I D + + DE +GK F D +N + W ++ L + +P
Sbjct: 529 DDIEDWDEDAVASKTSPTTHKTTTAAMDE-EGKVF-DPIQNKES---WSKL--LGKRVVP 581
Query: 576 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
C+ H + C++ V KKPG GR F++CAR GP+ + E C F W+
Sbjct: 582 KCE-HGDDCMSLVTKKPGINCGRSFYMCARPLGPSGDKETGTEFRCKMFIWS 632
>gi|400595545|gb|EJP63340.1| DNA lyase [Beauveria bassiana ARSEF 2860]
Length = 654
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 171/719 (23%), Positives = 277/719 (38%), Gaps = 177/719 (24%)
Query: 2 KIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R Q + + + + D +ADI+ QETK++R++L+ D+V+ G++
Sbjct: 4 RITTWNVNGIRNPFGYQPWREKRTFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------ET 106
+FS + + GYSGVA + R P+ AEEG G+L +
Sbjct: 64 VYFSLP----QHKKGYSGVAIYTR-------NATCAPIRAEEGILGVLCPPKSNTPYRDL 112
Query: 107 SGSKIMEGLEDFSK-----DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
K + G S+ DE L +DSEGRCV+ + F+LF VY P + D RI+F+
Sbjct: 113 PVDKQIGGYPTLSQLRGNVDEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFR 169
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RI 211
F L R L+ G+++ + GDLNI + +D + K NE+ R
Sbjct: 170 QSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRR 229
Query: 212 WFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
+L E +D+ R HP R +TCW + N G+RID+I
Sbjct: 230 ILNQLLFEGTVIGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYI 289
Query: 261 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
LC+ D FV ++ E L GSDH PVY
Sbjct: 290 LCS--------DGLKSWFVDSNIQEG------------------------LMGSDHCPVY 317
Query: 321 MCLGE--------------------------VPEIPQHSTPSLASRYLPIIRGVQQTLVS 354
+ + V Q +L+++ +P ++ +
Sbjct: 318 ATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIK 375
Query: 355 VLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCS 410
+ R ++ G + G P N G T D + + ++ C + + V +
Sbjct: 376 DMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALA 434
Query: 411 SSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLK 470
+ +E R + + T +N S D KAK S GQ +L+
Sbjct: 435 PPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQ 484
Query: 471 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 530
FF ++ V+ D S + + V + P+++ S++ PV +
Sbjct: 485 GFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPI 540
Query: 531 HGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 587
S + D E K W ++ L + +P C+ H EPC++
Sbjct: 541 VAATKLFSPIKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-HDEPCISL 583
Query: 588 VVKKPGPT-------------------FGRRFFVCARAEGPASNPEAN----CGYFKWA 623
V KKPG GR F++C R GP+ E + CG F W+
Sbjct: 584 VTKKPGVNCGGCLPRGGKADDSMIGNPAGRSFYICPRPLGPSGEKERDTEWRCGTFIWS 642
>gi|58271540|ref|XP_572926.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. neoformans JEC21]
gi|134115276|ref|XP_773936.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256564|gb|EAL19289.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229185|gb|AAW45619.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 654
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 165/356 (46%), Gaps = 79/356 (22%)
Query: 11 LRQRVSQFGSLRK-----LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTS 65
L + + +F S++K LLD DA I CFQE K R L+ + Y+ F++ R+
Sbjct: 19 LTRSIYRFSSMKKKNIEGLLDELDAQIFCFQEHKTVRTRLEKSMACPGPYDGFWTFPRS- 77
Query: 66 DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-----------ETSGSKI--- 111
+TGYSGV T+ + +P+ AEEG TGLL T +I
Sbjct: 78 ---KTGYSGVCTYV-------DSRYCVPLKAEEGITGLLLGDRLSTMKPPWTDAERIGSY 127
Query: 112 -----MEGLE--DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
ME ++ D +K ++ K+D EGR V+ D G F+LFN+Y P + ++ R +K+ +
Sbjct: 128 PDVNDMEWMDELDGTKFDVKKLDMEGRAVVCDFGLFVLFNLYCP--NETNSARRPYKMNY 185
Query: 165 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE--- 219
H LQ+R + L GR + +VGD+NI +D + GP A+ + R +L +
Sbjct: 186 LHALQERVQLLQAAGREVMLVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRILDDWCA 244
Query: 220 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279
G DV R P+R + +TCW A NYG+RID++LC
Sbjct: 245 PKGPMIDVVRESWPQRDDMFTCWNQKLDARSANYGSRIDYVLCT---------------- 288
Query: 280 TCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGEVPEIPQHST 334
PG P KGG + ++ GSDH PVY+ L E P+ T
Sbjct: 289 -----------------PGLRPWIKGGDILPKVYGSDHCPVYVDLHESIVTPEGET 327
>gi|62085796|gb|AAX63289.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 164/659 (24%), Positives = 264/659 (40%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 225
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 226 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
D+ R HP R YTCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMYTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 434
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 435 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 494
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 495 NNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V ++E P +++ S++ PV + S D E K
Sbjct: 482 RKQVP----ARERTPLQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|19112314|ref|NP_595522.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe 972h-]
gi|48427993|sp|P87175.1|APN2_SCHPO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|2117306|emb|CAB09119.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe]
gi|40287246|gb|AAR83752.1| AP-endonuclease-like protein [Schizosaccharomyces pombe]
Length = 523
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 166/349 (47%), Gaps = 69/349 (19%)
Query: 1 MKIVTYNVNGLRQRVSQF-----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++NVNG++ + F S +++ AD+IC QE K+++ + +G+
Sbjct: 1 MRILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGF 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM--- 112
+S+F T K R GYSGV + + +VA+PV AEEG TG+L G K
Sbjct: 61 DSYF----TFPKIRKGYSGVGFYVK-------KDVAIPVKAEEGITGILPVRGQKYSYSE 109
Query: 113 ----EGLEDFSKDELLK----IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
E + F KD K IDSEGRC++ D FIL VY P E+ R++++ F
Sbjct: 110 APEHEKIGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAF 167
Query: 165 FHVLQKRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSML 217
+ L++R E L+ +G R+I +VGD+NI ID D ++ E R W R +L
Sbjct: 168 YKALRERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLL 227
Query: 218 VESGGSFF-DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+ S D+ R +HP R+ +TCW + NYGTRID+ L L
Sbjct: 228 LPSRLGLLLDIGRIQHPTRKGMFTCWNTRLNTRPTNYGTRIDYTLATPDLLP-------- 279
Query: 277 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
V + DI+ + + GSDH PVY+ L E
Sbjct: 280 -----WVQDADIMAE-------------------VMGSDHCPVYLDLKE 304
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 608
W++I E + PLC+GHKEPC V+KPG +GR+F++CAR G
Sbjct: 446 WKQI--FSERAPPLCEGHKEPCKYLTVRKPGINYGRKFWICARPVG 489
>gi|62085788|gb|AAX63285.1| DNA lyase [Beauveria bassiana]
gi|62085830|gb|AAX63306.1| DNA lyase [Beauveria bassiana]
gi|62085840|gb|AAX63311.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 163/659 (24%), Positives = 264/659 (40%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 225
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 226 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 434
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 435 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 494
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 495 NNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V ++E P +++ S++ PV + S D E K
Sbjct: 482 RKQVP----ARERTPLQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|401883940|gb|EJT48120.1| DNA-(apurinic or apyrimidinic site) lyase [Trichosporon asahii var.
asahii CBS 2479]
gi|406696085|gb|EKC99381.1| DNA-(apurinic or apyrimidinic site) lyase [Trichosporon asahii var.
asahii CBS 8904]
Length = 635
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/402 (30%), Positives = 183/402 (45%), Gaps = 70/402 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK----LLDSFDADIICFQ-----------ETKLRRQEL 45
M+I+T+NVN LR + +K LLD+ +AD+ CFQ E K RR+ L
Sbjct: 1 MRILTWNVNVLRTVLDYHPMPKKNVEGLLDTLEADVFCFQGQVSFLTPLTSEHKTRRELL 60
Query: 46 KSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE 105
Y+ F++ R ++GYSGV T+ +++ +P+ AEEG TGLL
Sbjct: 61 DKATACPGRYDGFWTFPRH----KSGYSGVCTYV-------NSDYCVPLKAEEGITGLLL 109
Query: 106 TSGSKIMEGLEDFSKDELL-----------------------KIDSEGRCVITDHGHFIL 142
TS M+ ++ DE + ++D EGR V+ D G F+L
Sbjct: 110 TSKGGTMK--PPWTPDEQIGCYPELDDVPLLEETEGIPFDPARLDVEGRAVVCDFGLFVL 167
Query: 143 FNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-- 200
FN+Y P SE R +KL F VL+ R E L+ GR + + GD+N+ ID +
Sbjct: 168 FNLYVPNRGSE--ARGPYKLNFLTVLRARVEALMAAGREVILAGDMNVIRQPIDFGEGTI 225
Query: 201 --GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 258
G + + R+ F S G DV R P+R YTCW + A NYG+RID
Sbjct: 226 VPGTHYLDHPDRLLFESW-CHPKGPLIDVVRESFPDREGMYTCWNTKIDARPANYGSRID 284
Query: 259 HILCAGPCLH---QKHDLQSHNFVTCHVNECDILIDY--KRWKPGNAPRWKGGMSTRLEG 313
+ILC P L + D+QS F + H C + ID + + G R K ++
Sbjct: 285 YILCT-PGLRKWIKGGDIQSKVFGSDH---CPVYIDLHDEIEENGRTIRLKDVLNPANRP 340
Query: 314 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSV 355
AP + +VP P A+++ G Q+TL S+
Sbjct: 341 QSTAPKFP--SDVPRT-APEPPRFATKFFDEFSGKQRTLKSL 379
>gi|430813001|emb|CCJ29604.1| unnamed protein product [Pneumocystis jirovecii]
Length = 545
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 37/285 (12%)
Query: 1 MKIVTYNVNGLRQRVSQF-----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++V++N NG+R + S + +ADIICFQETK++R++L D++ GY
Sbjct: 1 MRLVSWNCNGIRNLFDYYPWCSEKSFEFMFKKLEADIICFQETKIQRKDLTYDMINVPGY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------E 105
+F+ T K + GYSGVA + VK F + P+ AEEG TG L E
Sbjct: 61 FAFY----TFSKKKKGYSGVAIY--VKQSFCT-----PLKAEEGITGRLLHADTGVPYIE 109
Query: 106 TSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF 165
+ S + G S L++D EGR ++ D F+LF VY P + D R +F+ +
Sbjct: 110 SPESVAIGGYTKISNQHALELDQEGRSIVLDLNLFVLFGVYCPL--NSDPERSKFRRAWM 167
Query: 166 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN--------EFRIWFRSML 217
L R L GR I ++GD+N + AID A +F +N + R W +L
Sbjct: 168 ETLDHRIRNLKKMGRNIIIMGDINASRDAIDTSYALEEFQENNTNGLEDLDQRAWLNKIL 227
Query: 218 V-ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
+ G D+ R HP R+ +TCW + A N+GTRID+IL
Sbjct: 228 LPHPEGFMIDLCRHFHPNRKGMFTCWNAKINARPCNFGTRIDYIL 272
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 573 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 605
S PLC H++PC+ KKPG F R F++C++
Sbjct: 455 SPPLCNVHQKPCIELQSKKPGINFKRYFWICSK 487
>gi|62085892|gb|AAX63337.1| DNA lyase [Cordyceps brongniartii]
Length = 580
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 154/655 (23%), Positives = 254/655 (38%), Gaps = 140/655 (21%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVIL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 223
GDLNI + +D + K + W +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGILMDEWQSMPTRRILNQLLFEGSVIGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G +
Sbjct: 315 NMFQDGRRVRSWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGGDVLQ 372
Query: 378 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 437
+ G T D + ++ R ++ + V + + G +E R +
Sbjct: 373 IENRGTTSDTAASLSRKMSGAGGTACANNVGAAVALAPPRG--NTGLERGRQTKRDGEQP 430
Query: 438 TITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 497
T G +N S D A+ KA GQ +L+ FF + V+ D S +
Sbjct: 431 TELGGPANKKSKSSSD-AKVKASN---GQRTLQGFFKPKV-VASDTATSAGGLAPADRKQ 485
Query: 498 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKE 554
V + + P+++ S++ P+ + S V D E K
Sbjct: 486 V---PVRERTPPQANGGSSQAPIPSPKTPTEPIVAATKLFSPVKVFDPIEAKE------- 535
Query: 555 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H E C++ V KKPG GR F++C R GP
Sbjct: 536 -------SWSKL--LGKRVVPRCE-HDESCISLVTKKPGVNCGRSFYICPRPLGP 580
>gi|62085874|gb|AAX63328.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 164/659 (24%), Positives = 264/659 (40%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGS----------KIMEGLEDFSK-----DELL 124
R P+ AEEG G+L S K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRHLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 225
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 226 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 434
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 435 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 494
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 495 NNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V ++E P +++ S++ PV + S D E K
Sbjct: 482 RKQVP----ARERTPLQANGVSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|340519815|gb|EGR50053.1| DNA lyase [Trichoderma reesei QM6a]
Length = 567
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 161/647 (24%), Positives = 251/647 (38%), Gaps = 144/647 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L D+V+ G++ +FS R + GYSGVA +
Sbjct: 14 TFQAMFDLLEADIVVLQETKIQRKDLTDDMVLVPGWDVYFSLPRH----KKGYSGVAIYT 69
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL-ETSGSKIMEGLEDFSK--------------DELL 124
R P+ AEEG G+L + L D + DELL
Sbjct: 70 R-------NATCAPIRAEEGILGVLCPPKSTTQFRNLPDDQRIGGYPRPEQLSGNIDELL 122
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCVI + F+L VY P + D R++F+++F L R L+ +G+ + +
Sbjct: 123 -LDSEGRCVILEFPAFVLLGVYSPA--NRDESRVEFRMEFLQALDARVRNLVAEGKEVIL 179
Query: 185 VGDLNIAPAAIDRCDAGPDFAKNEFRI--WF----RSML--VESGGS------------- 223
GDLN++ A D + + K + W R + + GG+
Sbjct: 180 AGDLNVSRAEADSTNIVENLRKEGLSMEEWMNLPSRRLFNHLVFGGTVQGERDVGREQPV 239
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R TCW + N G+RID++LC+ H L+ F ++
Sbjct: 240 LWDLCREFHPAREGMNTCWDTKRNTRPANNGSRIDYVLCS-------HGLRDW-FTEANI 291
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 343
E L GSDH PV+ L +V +T + L
Sbjct: 292 QEG------------------------LMGSDHCPVFATLADV-----VTTGNEKVSLLH 322
Query: 344 IIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGI 403
++ V RE + S L E + D +G+
Sbjct: 323 LVNPVGMFDRDGRRLREWHPK-DVLPLSAKLIPEFDRRQSIRDMFTK---------KAGV 372
Query: 404 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 463
Y SS GE T E DSA + T+ S + AR A+ +
Sbjct: 373 RPSSYSSSLGA---GEPTPEGEPAGDSARSEQLESKTKTSHAADHGLGLSDARHSARSNP 429
Query: 464 L---GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPV 520
L GQ +L+ FF +S + + T T+ + P
Sbjct: 430 LLAQGQTTLQGFFQP---------SSAKRVTKGRDGDATTTASANTSAP----------- 469
Query: 521 TDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 580
+SC ++ + D L KE W ++ L + +P C+ H
Sbjct: 470 --FSC-----EQTTAAAAALPSDRLVFDPILAKE-------SWSKL--LGKRKLPRCE-H 512
Query: 581 KEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
EPC++ V K+PG G F++CAR GP+ E CG F W+
Sbjct: 513 NEPCISLVTKRPGVNCGMSFYICARPLGPSGEKERGSEWRCGTFIWS 559
>gi|402222945|gb|EJU03010.1| DNase I-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 176/403 (43%), Gaps = 91/403 (22%)
Query: 1 MKIVTYNVNGLRQR-----VSQFGSLRKLLDSFD--ADIICFQETKLRRQELKSDLVMAD 53
M+I+T+NVNG+R SQ +L +L D +DI CFQE K+ R ++ D +
Sbjct: 1 MRILTWNVNGIRTLPQYYPWSQLKTLEAILAHPDIRSDIYCFQEMKIMRPQIDRDKALPG 60
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE-------- 105
Y+SF S G+ GYSGVA + + A P+ AEEG +GL++
Sbjct: 61 SYDSFISLP----TGKGGYSGVAIYV-------DSNKAKPIKAEEGLSGLIQPNPPLSEE 109
Query: 106 --TSGSKIMEGLEDFSKDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
S + L DF DE LL++D+EGR +I D G F+L NVY P +D
Sbjct: 110 DRVSSTYPAGHLMDFIPDEDDRLPSGLLELDNEGRALILDLGLFVLINVYCPADTVKD-- 167
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFR----IW 212
R +K F +LQ+R L + + +VGDLN+ + +D + P+ K + W
Sbjct: 168 RFSYKFNFHRLLQERVRLLQEENCEVIIVGDLNMCASRMDDGEPVPESKKRNWNEEPWDW 227
Query: 213 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
+ V+ G DV R HP+R + YT W S N+G R+D+ILC
Sbjct: 228 LKKW-VQPNGRLVDVTRRFHPDRTKMYTFWESKKDGRTANFGLRLDYILCTE-------- 278
Query: 273 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYM---------- 321
G P KG + ++ GSDH PVY+
Sbjct: 279 -------------------------GLLPWLKGSDILPQVLGSDHCPVYVDLHDEIILED 313
Query: 322 ----CL-GEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR 359
CL E+ + P A+R+ P + G Q + S + +
Sbjct: 314 GTKKCLRDEMKQTEITPWPRFATRFWPELSGKQTKISSFFVTK 356
>gi|327306001|ref|XP_003237692.1| DNA lyase [Trichophyton rubrum CBS 118892]
gi|326460690|gb|EGD86143.1| DNA lyase [Trichophyton rubrum CBS 118892]
Length = 603
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 171/370 (46%), Gaps = 93/370 (25%)
Query: 1 MKIVTYNVNGLRQRVS--------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
+++ T+NVNG+R S FG++ D +ADI+ FQE K++R++L+ D+V+
Sbjct: 3 LRLTTWNVNGIRNPFSYEPWRGNRTFGTM---FDILEADIVVFQEAKIQRKDLQDDMVLV 59
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-------- 104
G++ +FS R + GYSGV + R SS A + AEEG TG L
Sbjct: 60 SGWDCYFSLPRQ----KKGYSGVVIYTR-----SSKCSA--IRAEEGVTGALCPPSSKTP 108
Query: 105 --------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
+ G +E +E+ S+ + + +DSEGRC+I + F+L VY P AD ++T
Sbjct: 109 FRQLSASEQIGGYPSIEQMEELSEVDPIIVDSEGRCLILEFPAFVLIGVYCP-ADRDET- 166
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAK 206
R F+L FF++L+ R L+ G+R+ + GDLN ID A ++
Sbjct: 167 RDDFRLGFFNLLEVRVRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLS 226
Query: 207 NEFRIWFRSMLVESGGS-----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 255
R+ F ++ G + D+ R HP R YTCW A NYG+
Sbjct: 227 YPARLIFNRLVRPVGSTADTHDTETPPVLRDLCREFHPGRTGMYTCWNQKVNARPGNYGS 286
Query: 256 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315
RID+ILC+ +++S FV ++ E L GSD
Sbjct: 287 RIDYILCS-------DNIRSW-FVESNIQEG------------------------LMGSD 314
Query: 316 HAPVYMCLGE 325
H PVY + +
Sbjct: 315 HCPVYASISD 324
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 618
W ++ +P C+GH E C++ V KKPG GR F++C R GP+ + E+ C
Sbjct: 535 WSKV--FTRKPVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTPWRCP 592
Query: 619 YFKWA 623
F W+
Sbjct: 593 TFIWS 597
>gi|62085852|gb|AAX63317.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085854|gb|AAX63318.1| DNA lyase [Beauveria bassiana]
gi|62085856|gb|AAX63319.1| DNA lyase [Beauveria bassiana]
gi|62085858|gb|AAX63320.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085860|gb|AAX63321.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085862|gb|AAX63322.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085864|gb|AAX63323.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085866|gb|AAX63324.1| DNA lyase [Beauveria bassiana]
gi|62085868|gb|AAX63325.1| DNA lyase [Beauveria bassiana]
gi|62085870|gb|AAX63326.1| DNA lyase [Beauveria bassiana]
gi|62085872|gb|AAX63327.1| DNA lyase [Beauveria bassiana]
gi|62085876|gb|AAX63329.1| DNA lyase [Beauveria bassiana]
gi|62085878|gb|AAX63330.1| DNA lyase [Beauveria bassiana]
gi|62085880|gb|AAX63331.1| DNA lyase [Beauveria bassiana]
gi|62085882|gb|AAX63332.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 158/659 (23%), Positives = 257/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q SL+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 378 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085798|gb|AAX63290.1| DNA lyase [Beauveria bassiana]
gi|62085850|gb|AAX63316.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 162/659 (24%), Positives = 263/659 (39%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D R +F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRFEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 225
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 226 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 434
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 435 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 494
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 495 NNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V ++E P +++ S++ PV + S D E K
Sbjct: 482 RKQVP----ARERTPLQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085890|gb|AAX63336.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 158/659 (23%), Positives = 257/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDLRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q SL+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 378 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085822|gb|AAX63302.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 161/658 (24%), Positives = 262/658 (39%), Gaps = 147/658 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 225
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 226 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 434
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 435 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 494
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 495 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRFL 551
V + + +++ S++ PV + S D E K
Sbjct: 482 RKQV---PARERTLLQANGVSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE---- 534
Query: 552 DKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 ----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085786|gb|AAX63284.1| DNA lyase [Beauveria bassiana]
gi|62085844|gb|AAX63313.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 158/659 (23%), Positives = 257/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVIGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S + D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPIKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|452987163|gb|EME86919.1| hypothetical protein MYCFIDRAFT_194837 [Pseudocercospora fijiensis
CIRAD86]
Length = 622
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 154/670 (22%), Positives = 260/670 (38%), Gaps = 134/670 (20%)
Query: 7 NVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
NVNG+R S + + D ++DI+ QE K++R++L+ D+V+ DG++ +FS
Sbjct: 4 NVNGIRNPFSYPPWNVSRTFSAMFDILESDIVVMQELKIQRKDLRDDMVLVDGWDCYFSL 63
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------------- 108
K + GYSGV + R P+ AEEG G+L ++
Sbjct: 64 P----KHKKGYSGVGIYTR-------NATCAPIRAEEGVLGVLPSANGTPYRDLPDEDSI 112
Query: 109 -----SKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ 163
S M + + ++ +D+EGRCV+ + F+LF VY P + + +R F+
Sbjct: 113 GGYLTSVQMADIAEIGGEDPAGLDAEGRCVVVEFPAFVLFGVYSPA--NSNGLRDGFRHG 170
Query: 164 FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-------------DFAKNEFR 210
F L R L+ G+ + +VGDLN+ I D+GP DF R
Sbjct: 171 FVCALDHRIRNLIKAGKNVILVGDLNVTRHEI---DSGPTLEEMRKGLITHEDFISGPNR 227
Query: 211 IWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
F L++ G F+D R HP+R+ YT W + A N+G+RID
Sbjct: 228 RIFNQQLIDGEVVGERDEGREKGVFWDTTRIFHPDRKGMYTHWDTKVNARPGNFGSRIDF 287
Query: 260 ILCAGPCLH--QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 317
+L + + ++Q + H C + ID++ N G L+ +
Sbjct: 288 VLVSEALRSWVKYGNIQEGLLGSDH---CPVYIDFE-----NEVTVNDGKIALLDIMNPP 339
Query: 318 PVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V++ E STP +++ +P ++T+ S+ + K + P
Sbjct: 340 AVFVGGERKQEWTIASTPGFSAKRMPEFD-KRRTIKSMFAAPALKKSQQ--------PTP 390
Query: 378 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 437
S +D V E+EG + +
Sbjct: 391 PGSVAQADDSQPAV-----------------------ETEG------------STAPAKR 415
Query: 438 TITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 497
I+ ++ PF ++ K ++ GQ SLK FF +S + ++
Sbjct: 416 KISVSTTPKEYPFKKQKSDIKTAPTK-GQQSLKGFFQAKS----------VPITAAAQSA 464
Query: 498 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 557
D E+ + ++ + + S + ++S + D D K
Sbjct: 465 EKDLKNETEDTDSTAPNTGGVESNEDSETTEPPRTPSASQITADTDPSPRKFASKLASAE 524
Query: 558 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 616
+ +W + PLC+GH EPC + KK G GR F++CAR GP+ E
Sbjct: 525 KSQHQWGAL--FSRPVAPLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPSGEKERGT 582
Query: 617 ---CGYFKWA 623
CG F W+
Sbjct: 583 QWRCGTFIWS 592
>gi|62085808|gb|AAX63295.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 161/658 (24%), Positives = 262/658 (39%), Gaps = 147/658 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 225
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 226 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 434
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 435 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 494
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 495 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRFL 551
V + + +++ S++ PV + S D E K
Sbjct: 482 RKQV---PARERTLLQANGVSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE---- 534
Query: 552 DKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 ----------SWSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|391868669|gb|EIT77879.1| apyrimidinic endonuclease [Aspergillus oryzae 3.042]
Length = 627
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 144/306 (47%), Gaps = 58/306 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+I T+NVNG+R + + + + +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 FRITTWNVNGIRNPFAYEPWRGKRTFEAMFEILEADIVVLQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ FS R+ + GYSGV + R P+ AEEG TG+L
Sbjct: 63 DCHFSLPRS----KKGYSGVVIYTR-------NATCAPLRAEEGLTGVLCPPNSSVPFRD 111
Query: 105 -----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
+ G E L D +DSEGRCVI + F+L +Y P + D R
Sbjct: 112 LPLDRQIGGYPTTEQLSTLELDAA-TLDSEGRCVILEFPAFVLLGLYCPA--NRDESRDS 168
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF----- 209
F+ F ++ R L+ G+R+FV GDLNI+ ID A K +EF
Sbjct: 169 FRQGFLDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHASEAIRKGTTTEDEFISAPA 228
Query: 210 RIWFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 257
R F + LV SG + FD+ RS HP RR YTCW A NYG+RI
Sbjct: 229 RRLF-NQLVYSGKVIGERDEGREQPALFDICRSFHPNRRGMYTCWEQKINARPGNYGSRI 287
Query: 258 DHILCA 263
D++LC+
Sbjct: 288 DYVLCS 293
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 562 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 617
+W ++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 559 DWSKL--FTKKPVPKCEGHQEPCISLSTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRC 616
Query: 618 GYFKWA 623
F WA
Sbjct: 617 PTFIWA 622
>gi|62085834|gb|AAX63308.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 158/659 (23%), Positives = 256/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDNDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085790|gb|AAX63286.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 158/659 (23%), Positives = 259/659 (39%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGVLGVLCPPKSNMPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVIGDRDDDRECAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG----------EVPEI---- 329
E L GSDH PVY + ++ E+
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 330 ------------PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRARNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + +P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTLPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085800|gb|AAX63291.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 257/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQVGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 378 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 IESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085886|gb|AAX63334.1| DNA lyase [Beauveria bassiana]
gi|62085888|gb|AAX63335.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 257/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 378 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 IESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085812|gb|AAX63297.1| DNA lyase [Beauveria bassiana]
gi|62085814|gb|AAX63298.1| DNA lyase [Beauveria bassiana]
gi|62085824|gb|AAX63303.1| DNA lyase [Beauveria bassiana]
gi|62085826|gb|AAX63304.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 257/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGQRVRNWDQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 378 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNKVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085794|gb|AAX63288.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 158/659 (23%), Positives = 256/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQSRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDNDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|388579621|gb|EIM19943.1| DNase I-like protein [Wallemia sebi CBS 633.66]
Length = 510
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 144/293 (49%), Gaps = 48/293 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++N+NG+R+ + + S + + +ADI+CFQETK + L + V D ++S++S
Sbjct: 1 MRVLSWNINGIRRILGNYKSCEEFVRGLEADIVCFQETKAFKSALGASQVSFDTFQSYWS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTG-----------LLETSGS 109
++ YSGV + + P+A EEG +G L +
Sbjct: 61 FCHSN----RSYSGVCVYSK----------ETPLAVEEGLSGGYTTFSVSIPQLSDEDKL 106
Query: 110 KIMEGLEDFSKDELL------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVR 157
K + + ++++ LL ++D+EGR + D+G F+L NVY P E R
Sbjct: 107 KPLANIHSYNQETLLGQNYHPDFTNVKQLDTEGRALCLDYGMFVLINVYCPAEGDES--R 164
Query: 158 IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEF---- 209
++FK F +L +R L GR+I ++GD+NIA AID CD D K EF
Sbjct: 165 VKFKKSFHELLFERIRILKEGGRQIILLGDINIAHRAIDHCDGLELTRTDIGKMEFETKY 224
Query: 210 -RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
R W ++ + D+ R HP R +TCW A NYGTRID++L
Sbjct: 225 TRQWMDKLVSDDNSPLVDIMRLFHPTREGMFTCWNQLINARPSNYGTRIDYVL 277
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN------ 616
W+ + + +P CK H E C V KPGP G++F++C+R GP + +
Sbjct: 422 WKAL--MAPKRVPKCKVHNEDCREYTVNKPGPNKGKKFWLCSRNVGPGYDAGGSKRNRAD 479
Query: 617 ------CGYFKWA 623
C +F W+
Sbjct: 480 VDSRYRCNFFVWS 492
>gi|405122231|gb|AFR96998.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. grubii H99]
Length = 671
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 154/336 (45%), Gaps = 74/336 (22%)
Query: 17 QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVA 76
Q ++ LLD DA I CFQE K R L+ + Y+ F++ R+ +TGYSGV
Sbjct: 2 QKKNIEGLLDELDAQIFCFQEHKTVRTRLEKSMACPGPYDGFWTFPRS----KTGYSGVC 57
Query: 77 TFCRVKSPFSSTEVALPVAAEEGFTGLL---------------ETSGS----KIMEGLE- 116
T+ + +P+ AEEG TGLL E GS ME ++
Sbjct: 58 TYV-------DSRYCVPLKAEEGITGLLLGDRLSTMKPPWTDVERIGSYPDVNDMEWMDE 110
Query: 117 -DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 175
D +K ++ K+D EGR V+ D G F+LFN+Y P + + R +K+ + H LQ+R L
Sbjct: 111 LDGTKFDVKKLDMEGRAVVCDFGLFVLFNLYCP--NETNGARRPYKMNYLHALQERVHLL 168
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE---SGGSFFDVFRS 230
GR + +VGD+NI +D + GP A+ + R +L + G DV R
Sbjct: 169 QAAGREVILVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRILDDWCAPKGPMIDVVRE 227
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 290
P+R + +TCW A NYG+RID++LC
Sbjct: 228 SWPQRDDMFTCWNQKLDARSANYGSRIDYVLCT--------------------------- 260
Query: 291 DYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGE 325
PG P KGG + ++ GSDH PVY+ L E
Sbjct: 261 ------PGLRPWIKGGDILPKVYGSDHCPVYVDLHE 290
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 554 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 604
E+N A +W + + PLC H +PC +V KPGP G+RF++C+
Sbjct: 593 EKNAKAAPQWSSL--FAKKLPPLCTVHHKPCKDFIVMKPGPNKGKRFWLCS 641
>gi|62085806|gb|AAX63294.1| DNA lyase [Beauveria bassiana]
gi|62085816|gb|AAX63299.1| DNA lyase [Beauveria bassiana]
gi|62085818|gb|AAX63300.1| DNA lyase [Beauveria bassiana]
gi|62085828|gb|AAX63305.1| DNA lyase [Beauveria bassiana]
gi|62085832|gb|AAX63307.1| DNA lyase [Beauveria bassiana]
gi|62085842|gb|AAX63312.1| DNA lyase [Beauveria bassiana]
gi|62085848|gb|AAX63315.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 257/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q SL+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 378 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D A+ KA GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD-AKVKASN---GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DREQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085838|gb|AAX63310.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 254/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V + Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ S +S T
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKAVAS----DSATSAGEL 477
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
+ P+++ S++ PV + S D E K
Sbjct: 478 APADRKQLPTRERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|346320505|gb|EGX90105.1| DNA lyase [Cordyceps militaris CM01]
Length = 613
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 175/697 (25%), Positives = 272/697 (39%), Gaps = 170/697 (24%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
+I T+N G+ +S G + D +ADI+ QETK++R++L+ D+V+ G++ +FS
Sbjct: 4 RITTWN--GIPLGISH-GERSAMFDILEADIVVMQETKIQRKDLQDDMVLVPGWDVYFSL 60
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLED-- 117
+ + GYSGVA + R PV AEEG G+L S + E ED
Sbjct: 61 P----QHKKGYSGVAIYTR-------NATCAPVLAEEGVLGILCPPKSNTPYRELPEDQR 109
Query: 118 -----------FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+ DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F
Sbjct: 110 IGGYPTSNQLSGNVDEAL-LDSEGRCVVLEFPAFVLFGVYSPA--NRDESRIEFRQSFVE 166
Query: 167 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSM 216
L R L+ G+++ + GDLNI + +D + K + W F +
Sbjct: 167 ALDARIRNLITAGKQVILTGDLNIVRSELDSSNVAEGLIKEGMTMDEWQSLPARRIFNQL 226
Query: 217 LVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+ E +D+ R HP R +TCW + N G+RID+ILC+
Sbjct: 227 VFEGTVIGDRDTGREHAVLWDICRCFHPRRVGMHTCWDTKRNTRPANVGSRIDYILCS-- 284
Query: 266 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-- 323
D V ++ E L GSDH PVY +
Sbjct: 285 ------DGIKDWIVDSNIQEG------------------------LMGSDHCPVYATMSD 314
Query: 324 -----GEVPEIPQHSTPSLASRYLPIIRGVQQ--------TLVSVLMKREVAKQGKSCKF 370
G + + PS +R +Q L+ +R ++ + K
Sbjct: 315 KVTKNGTEMTLAEAMNPSNMFETGRRVRDWEQRDALRLSAKLIPEFDRRRNIREMFTSKA 374
Query: 371 SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 430
S +L G + N D + +SG +SS ES NC +
Sbjct: 375 SQTLLHPEKIGGQSLQI-RNADMAAYTARNSGT-----TASSGAES--------TNCFE- 419
Query: 431 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 490
A+ ++ G +N++ ++ R + K+ G +KR S D T
Sbjct: 420 ---AAAPLVSVGGTNNV---NLQRGSQTKKRRPDGPAQAALPTNKRGKNSRDTKTKTGQT 473
Query: 491 SLN-----------VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCS 539
+L NNSVT + E+VP S ++PV + +G S
Sbjct: 474 TLQGFFKPKTVASLENNSVTSVA---EQVPAG---SGRVPVRAQEAPLA--NGGLSPAKV 525
Query: 540 HDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTF--- 596
D E K W ++ L + +P C+ H EPC++ V KKPG
Sbjct: 526 FDPIEAKDS--------------WSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCVLA 568
Query: 597 ------GRRFFVCARAEGPASNPEAN----CGYFKWA 623
R F++C R GP+ + E + CG F W+
Sbjct: 569 GEAVDQRRSFYICPRPLGPSGDKERDTEWRCGTFIWS 605
>gi|321262100|ref|XP_003195769.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus gattii
WM276]
gi|317462243|gb|ADV23982.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
gattii WM276]
Length = 651
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 155/332 (46%), Gaps = 72/332 (21%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
++ LLD DA IICFQE K R L+ + Y+ F++ R+ +TGYSGV T+
Sbjct: 5 NIEGLLDELDAQIICFQEHKTVRTRLEKSMACPGPYDGFWTFPRS----KTGYSGVCTYV 60
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL---------------ETSGS-KIMEGLE-----DF 118
+ +P+ AEEG TGLL E GS +++ ++ D
Sbjct: 61 -------DSRYCVPLKAEEGITGLLLGDRLSTMKPPWTDVERIGSYPVVDDMDWMDELDG 113
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
+K ++ K+D EGR V+ D G F+LFN+Y P + + R +K+ + H LQ+R L
Sbjct: 114 TKFDVKKLDMEGRAVVCDFGLFVLFNLYCP--NETNDARRPYKMNYLHALQERVHLLQAA 171
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSML---VESGGSFFDVFRSKHP 233
GR + +VGD+NI +D + GP A+ + R +L G DV R P
Sbjct: 172 GREVIIVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRILDNWCAPKGPMVDVIRESWP 230
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
+R + +TCW A NYG+RID++LC H L +
Sbjct: 231 QRDDMFTCWNQKLDARSANYGSRIDYVLCT-------HGL-------------------R 264
Query: 294 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
W G G + +++ GSDH PVY+ L E
Sbjct: 265 PWIKG------GDILSKVYGSDHCPVYVDLHE 290
>gi|345565933|gb|EGX48880.1| hypothetical protein AOL_s00079g101 [Arthrobotrys oligospora ATCC
24927]
Length = 569
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 183/390 (46%), Gaps = 55/390 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +AD++CFQE K++ ++L+ D+V+ G++S+F T K + GYSGVA + R +S
Sbjct: 1 MFDILEADVVCFQELKIQSKDLRDDMVLIPGWDSYF----TFPKHKKGYSGVAIYTR-QS 55
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLK------------IDSEGR 131
S P+ AEEG TG L +G+ D +D+ + +DSEGR
Sbjct: 56 KIS------PIKAEEGITGHLLPTGATRNTSYRDLPEDQQIGGYPTIDKEDGVVLDSEGR 109
Query: 132 CVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIA 191
++ D G F+L Y P ED+ R F++ + L +R L G+R+ VGD+NIA
Sbjct: 110 GLVVDFGLFVLIGTYCP-VGREDSARQDFRMAWLKALDERIRNLTKMGKRVVTVGDINIA 168
Query: 192 PAAIDRCDA-------GPDFAKNEFRIW--------FRSMLVESGGS-FFDVFRSKHPER 235
P ID DA GPD +E W RS+ S + DV R P+R
Sbjct: 169 PEPIDSADAWEMQKRLGPD--SSEMLEWNETPAKKLLRSLCEPSEEAVMVDVVRQFFPDR 226
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPC--LHQKHDLQSHNFVTCHVNECDILIDYK 293
YT W + A NYG+RID+++ + + D+Q+ + H C + Y
Sbjct: 227 VAMYTHWETKINARPGNYGSRIDYVVASSSMKDWFESADIQNGLHGSDH---CPV---YA 280
Query: 294 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLV 353
KP G L+ + A V++ E+P P +++R +P RG ++++
Sbjct: 281 VLKPEI--ELDGEKRVLLDLVNPAGVFVGGERKQELP--PPPKMSARLIPHFRG-RRSIK 335
Query: 354 SVLMKREVAKQGKSCKFSGSLPAESNSTGD 383
+ ++ VAK S PAE + D
Sbjct: 336 DMFQRKTVAKVVSIAGSSTQEPAEPSGEND 365
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA--------SNPE 614
W ++ + S PLC GH EP +KPG GR F++CAR GP+ SN E
Sbjct: 502 WNKL--FAKPSAPLCDGHSEPAKKMQTRKPGLNNGRWFWMCARPVGPSGPKERSRRSNDE 559
Query: 615 ANCGYFKW 622
C YFKW
Sbjct: 560 WRCDYFKW 567
>gi|449548040|gb|EMD39007.1| hypothetical protein CERSUDRAFT_47445 [Ceriporiopsis subvermispora
B]
Length = 537
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 123/436 (28%), Positives = 193/436 (44%), Gaps = 100/436 (22%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + F S +LD ADIICFQE K R + D+ + Y
Sbjct: 1 MRILSWNINGVRTLPQYHPWNTFKSFEGILDEVGADIICFQEMKSSRAAILRDVALPGPY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE-----TSGSK 110
SFFS + GYSGVA ++ + +P+ AEEG G+L+ TS +
Sbjct: 61 HSFFSFPVR----KGGYSGVAV-------YTDSRKVVPLKAEEGLAGILQPKPPLTSEER 109
Query: 111 I-------------MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVR 157
+ ++G D +DSEGR V+ D G F+L NVY P + D R
Sbjct: 110 VSPSYPRAHEIDAYVDGHGDLPS-TFDALDSEGRAVVVDFGLFVLINVYCP--NETDETR 166
Query: 158 IQFKLQFFHVLQKRWEFLLCQGRR-IFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRI 211
FK+ + +LQ+R L+ + RR + V+GD+NI I+ + F ++ R+
Sbjct: 167 TSFKMNYHLMLQERVRKLIEEERREVIVLGDVNICANPIEHAEGNQPSFLAAFYEHPARL 226
Query: 212 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-K 270
WF+ L + G D+ R P+R+ +TCW A + NYG+R+D+IL L K
Sbjct: 227 WFKQWL-DPVGPMVDIVRHFWPDRKGMFTCWNMKIMARESNYGSRVDYILVTKGLLPWIK 285
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL------- 323
H G ++GSDH P+Y+ L
Sbjct: 286 H---------------------------------GDTQPSIKGSDHCPLYIDLHEEITSE 312
Query: 324 -GEVPEIP--------QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSL 374
GEV ++ + P +A+++ G +QT++S KQG K S S
Sbjct: 313 TGEVMKLRDAMKQDDLRREPPRIAAKFWEEYSG-KQTVLSAFF----GKQGDKAKISPS- 366
Query: 375 PAESNSTGDTEDCSEN 390
P + S T++ + +
Sbjct: 367 PKPTVSPPTTQETNPD 382
>gi|62085820|gb|AAX63301.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 159/659 (24%), Positives = 260/659 (39%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTPSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V + Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS----NQESEGEFTKTIENCRDSANV 433
N G T D + + ++ +G G+ C+++ + +E R +
Sbjct: 373 ENR-GVTSDTAASSGMTM---IGAG---GMACTNNVGAAAALAPPRANTGLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSRKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085802|gb|AAX63292.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 257/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V + Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDFATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
+ + P+++ S++ PV + S D E K
Sbjct: 481 DRKQL---PTRERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085792|gb|AAX63287.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 259/659 (39%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGVLGVLCPPKSNMPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E+
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEATVIGDRDDDRECAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+ ID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSPIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG----------EVPEI---- 329
E L GSDH PVY + ++ E+
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 330 ------------PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRARNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + +P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTLPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085836|gb|AAX63309.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 159/659 (24%), Positives = 260/659 (39%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTPSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V + Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 378 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS----NQESEGEFTKTIENCRDSANV 433
N G T D + + ++ +G G+ C+++ + +E R +
Sbjct: 373 ENR-GVTSDTAASSGMTM---IGAG---GMACTNNVGAAAALAPPRANTGLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVLSRKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085884|gb|AAX63333.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 256/659 (38%), Gaps = 149/659 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 326 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V Q SL+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 378 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 433
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 550
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++ R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYISPRPLGP 579
>gi|396469847|ref|XP_003838506.1| similar to DNA lyase [Leptosphaeria maculans JN3]
gi|312215074|emb|CBX95027.1| similar to DNA lyase [Leptosphaeria maculans JN3]
Length = 650
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 164/734 (22%), Positives = 262/734 (35%), Gaps = 202/734 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFG--------SLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
++I T+NVNG+R + FG + + D ADI+ QE K++R++L D+V+
Sbjct: 2 VRITTWNVNGIR---NPFGYKPWSTNRTFNAMFDILQADIVIMQELKIQRKDLTDDMVLV 58
Query: 53 DGYESFFSCTRTSDKGR------------------TGYSGVATFCRVKSPFSSTEVALPV 94
G++ +FS + KGR GYSGV + R V P+
Sbjct: 59 PGFDCYFSLPK-HKKGRYYSLGQSWTAHRHHVLIGVGYSGVGIYTR-------QSVCAPI 110
Query: 95 AAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG 138
AEEG G+L G + D + +D+EGRC++ +
Sbjct: 111 RAEEGLMGVLCPPNSSTPYRELPESTSIGGYPTPSQVADIGDVDPAALDAEGRCLVLEFP 170
Query: 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC 198
F+LF VY P + + +R F+L F +L R L G+ + + GDLN++ ID
Sbjct: 171 AFVLFGVYSPA--NSNGLRDDFRLGFLMMLDARIRNLKKMGKNLILTGDLNVSRDLIDTA 228
Query: 199 DAG----------PDFAKNEFRIWFRSMLVESG-----------GSFFDVFRSKHPERRE 237
A ++ R F +L +D+ R HP+R
Sbjct: 229 KADDHMRAEGMTHEEYLSTPNRRIFNQLLFNGKVPGKRDKGREEPVLYDLCREYHPDREG 288
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 297
+T W A N+G+RID ILC+ I+ K W
Sbjct: 289 MFTHWEQKINARPGNFGSRIDFILCS--------------------------IEIKDW-- 320
Query: 298 GNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI---------------------------- 329
+ + L GSDH PVY + +
Sbjct: 321 ----FMEANIQEGLMGSDHCPVYAVTKDKVSVGRSQEAAAEAEHPEEEKHILDSMNPTGM 376
Query: 330 -----------PQHSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLP 375
P P+L+ + LP R ++ + A +S G+ P
Sbjct: 377 FQGGVRLREYDPSRDMPALSGKRLPEFTKRRNIRDMFSKKPALSKSASTTRSTLNEGTAP 436
Query: 376 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFT--KTIENCRDSANV 433
+ + + + +++L S++N + T + E R SA+
Sbjct: 437 SSAMIADPSSTATTEANKAL----------APPTSTANGDKAPLVTPLNSPEKRRASASA 486
Query: 434 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
+ T+ + SN+ P K GQ SLK FF RS
Sbjct: 487 SPGKTLKRSKSNN--PVAGSNPTK-------GQQSLKGFFLTRSK--------------- 522
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 553
T+ S +++E P S + +P D S G S + +
Sbjct: 523 ----PTEPSPTKDEAPLSVPSTPAVPTGDPSS--QSATGAPDLSVSQTSETYDPDPLATQ 576
Query: 554 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 613
E + + W ++ + P C+ H EPC+ KKPG GR+F++C R GP+
Sbjct: 577 EASRES---WSKL--FSKKPTPRCE-HGEPCITLTTKKPGMNCGRQFYMCPRPIGPSGQK 630
Query: 614 EAN----CGYFKWA 623
E CG F W+
Sbjct: 631 ETGTQWRCGTFIWS 644
>gi|111054099|gb|ABH04240.1| DNA lyase-like protein [Pseudocercospora fijiensis]
Length = 622
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 153/670 (22%), Positives = 259/670 (38%), Gaps = 134/670 (20%)
Query: 7 NVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
NVNG+R S + + D ++DI+ QE K++R++L+ D+V+ DG++ +FS
Sbjct: 4 NVNGIRNPFSYPPWNVSRTFSAMFDILESDIVVMQELKIQRKDLRDDMVLVDGWDCYFSL 63
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------------- 108
K + GYSGV + R P+ AEEG G+L ++
Sbjct: 64 P----KHKKGYSGVGIYTR-------NATCAPIRAEEGVLGVLPSANGTPYRDLPDEDSI 112
Query: 109 -----SKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ 163
S M + + ++ +D+EGRCV+ F+LF VY P + + +R F+
Sbjct: 113 GGYLTSVQMADIAEIGGEDPAGLDAEGRCVVVKSPAFVLFGVYSPA--NSNGLRDGFRHG 170
Query: 164 FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-------------DFAKNEFR 210
F L R L+ G+ + +VGDLN+ I D+GP +F R
Sbjct: 171 FVCALDHRIRNLIKAGKSVILVGDLNVTRHEI---DSGPTLEEMRKGLITHEEFISGPNR 227
Query: 211 IWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
F L++ G F+D R HP+R+ YT W + A N+G+RID
Sbjct: 228 RIFNQQLIDGEVVGERDEGREKGVFWDTTRIFHPDRKGMYTHWDTKVNARPGNFGSRIDF 287
Query: 260 ILCAGPCLH--QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 317
+L + + ++Q + H C + ID++ N G L+ +
Sbjct: 288 VLVSEALRSWVKYGNIQEGLLGSDH---CPVYIDFE-----NEVTVNDGKIALLDIMNPP 339
Query: 318 PVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 377
V++ E STP +++ +P ++T+ S+ + K + P
Sbjct: 340 AVFVGGERKQEWTIASTPGFSAKRMPEFD-KRRTIKSMFAAPALKKSQQ--------PTP 390
Query: 378 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 437
S +D V E+EG + +
Sbjct: 391 PGSVAQADDSQPAV-----------------------ETEG------------STAPAKR 415
Query: 438 TITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 497
I+ ++ P ++ KA ++ GQ SLK FF +S + ++
Sbjct: 416 KISVSTTPKEYPLKKQKSDIKAAPTK-GQQSLKGFFQAKS----------VPITAAAQSA 464
Query: 498 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 557
D E+ + ++ + + S + ++S + D D K
Sbjct: 465 EKDLKNETEDTDSTAPNTGGVESNEDSETTEPPRTPSASQITADTDPSPRKFASKLASAE 524
Query: 558 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 616
+ +W + PLC+GH EPC + KK G GR F++CAR GP+ E
Sbjct: 525 KSQHQWGAL--FSRPVAPLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPSGEKERGT 582
Query: 617 ---CGYFKWA 623
CG F W+
Sbjct: 583 QWRCGTFIWS 592
>gi|327349957|gb|EGE78814.1| DNA lyase Apn2 [Ajellomyces dermatitidis ATCC 18188]
Length = 642
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 144/312 (46%), Gaps = 66/312 (21%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ DADI+ FQETK+++++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALDADIVIFQETKIQKKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ FFS K + GYSGV + R P+ AEEG TG+L
Sbjct: 62 DCFFSLP----KYKKGYSGVVIYTR-------NSKCCPIRAEEGITGILYLPASVSPFPS 110
Query: 105 -----------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+ G E L S + +DSEGRC+I + F+L VY P +
Sbjct: 111 PTSFRDLPEEAQIGGYPTAEQLA-LSDVDASTLDSEGRCMILEFPAFVLIGVYCPA--NR 167
Query: 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPD 203
D R F+ F ++L R L+ G+R+ V+GDLNI + ID A +
Sbjct: 168 DETRDGFRTGFVNILDARVRNLVAMGKRVIVMGDLNICGSEIDSARALEEIRKGNLTDSE 227
Query: 204 FAKNEFRIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQ 250
F R F ++ GG D+ R HP+R YTCW A
Sbjct: 228 FVSAPVRRVFNQLVY--GGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARP 285
Query: 251 FNYGTRIDHILC 262
NYG+RID++LC
Sbjct: 286 GNYGSRIDYVLC 297
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 459 AKKSQLGQLSLKSFFHKR-----SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 513
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 468 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 517
Query: 514 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 564
N P + +SC + G + S++ D R D N + W
Sbjct: 518 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 574
Query: 565 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 620
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 575 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 632
Query: 621 KWA 623
W+
Sbjct: 633 IWS 635
>gi|302837660|ref|XP_002950389.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
gi|300264394|gb|EFJ48590.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
Length = 1732
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 151/333 (45%), Gaps = 73/333 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+ I+ +N+N L V S R +D DI CFQE KL + +L +G++
Sbjct: 19 LNIMCWNINCLTPTVRNMELRHKSFRGFMDHLQLDIACFQEVKLPAARITRELACVEGFQ 78
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
SF++ S + GYSGV T+CR T A P A ++
Sbjct: 79 SFWA----SSTSKPGYSGVTTWCR-------TATAAPRDA-----------------AVD 110
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRA-DSEDTVRIQFKLQFFHVLQKRWEFL 175
DE ++D+EGR V+TDHG F+L NVY P A D + R+ +KL F L+ + + L
Sbjct: 111 CLGGDERPELDTEGRFVLTDHGAFVLLNVYVPNAGDRPERARLPYKLAFLRALRTKMDEL 170
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVESGG---SFFDVFRS 230
GR++ +VGDLNI A +R D P DF ++ + L E G ++ DV+R
Sbjct: 171 TALGRQVVLVGDLNI---AAERRDVHPTLDFDS----MYDKQELAELSGLIAAYPDVWRH 223
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 290
HP+ +YT W T A FN G RID++L + L +V C+IL
Sbjct: 224 LHPDTEGSYTVWDERTSARAFNTGLRIDYVLVSPGLLP-------------YVQSCEILT 270
Query: 291 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
P+W SDHA + + L
Sbjct: 271 AAA-----IPPKW----------SDHAAILLTL 288
>gi|347840170|emb|CCD54742.1| similar to DNA lyase [Botryotinia fuckeliana]
Length = 651
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 144/310 (46%), Gaps = 64/310 (20%)
Query: 1 MKIVTYN--VNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMAD 53
++I T+N VNG+R Q + + + D + DI+ QETK++R++L+ D+V+
Sbjct: 11 LRITTWNETVNGIRNPFGYQPWREKRTFSAMFDILETDILVMQETKIQRKDLRDDMVLVP 70
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIME 113
G++ +FS K + GYSGVA + R V P+ AEEG TG+L S
Sbjct: 71 GWDVYFSLP----KYKKGYSGVAIYTR-------NSVCAPIRAEEGITGVLTPPNSTT-- 117
Query: 114 GLEDFSKDELL-----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
D KD+ + +DSEGRCVI + FIL VY P + D
Sbjct: 118 SFRDLPKDQQIGGYPTGAQLQDYFLDAATLDSEGRCVILEFPAFILIGVYCPA--TRDET 175
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------- 209
R +F++ F + L R L+ G+ +F+ GDLNI ID +A K
Sbjct: 176 RDEFRIGFLNALDTRVRNLVALGKSVFLTGDLNIIREEIDTANAEEKLKKEGLTVEQYIS 235
Query: 210 ---RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNY 253
R F +LV GG +D+ R HP R+ +TCW A N+
Sbjct: 236 TPARRLFNHLLV--GGKVIGDRDEGKEPQVMWDICRGFHPTRKGMFTCWDQKMNARPGNF 293
Query: 254 GTRIDHILCA 263
G+RID++LC+
Sbjct: 294 GSRIDYVLCS 303
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 544 EKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 601
EK K DKE ++ VA W + L+ IP HKEPC++ + KK G GR F+
Sbjct: 561 EKTCKSRQDKEVHDPIVAKESWSK---LLTKRIPPKCEHKEPCISHITKKQGINRGRSFY 617
Query: 602 VCARAEGPASNPEAN----CGYFKWA 623
+C R GP+ E N C F W+
Sbjct: 618 MCPRPLGPSGQQEKNTEWRCNTFIWS 643
>gi|134079677|emb|CAK97103.1| unnamed protein product [Aspergillus niger]
Length = 572
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 144/343 (41%), Gaps = 83/343 (24%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQETK++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 20 MFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPRV----KKGYSGVVIYTR--- 72
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
P+ AEEG +G+L + G +E L D +D
Sbjct: 73 ----NATCAPIRAEEGLSGMLCPPNSSVSFRELPENQQIGGYPTIEQLSQLEVDAA-TLD 127
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCVI + F+L +Y P + D R F+ F ++ R L+ G+R+FV GD
Sbjct: 128 SEGRCVILEFPAFVLLGIYSPA--NRDESRDSFRRSFIDLMDARIRNLVAMGKRVFVTGD 185
Query: 188 LNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLV--------ESGGS---FFD 226
LNI+ ID AG +F R +L E G D
Sbjct: 186 LNISRGEIDAAHAGEAIRKGTLTEDEFVSTHARRVLNQLLSDGKVIGEREEGREQPVLHD 245
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+ RS HP R+ YTCW A NYG+RID++LC+
Sbjct: 246 ICRSFHPGRKGMYTCWEQRINARPGNYGSRIDYVLCS----------------------- 282
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 329
+D + W + L GSDH PVY E I
Sbjct: 283 ---LDMQEWF------CDSNIQEGLMGSDHCPVYAMFKETVNI 316
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 619
PLC+GH+EPC++ KKPG GR F++C R GP+ N E +
Sbjct: 480 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKASAF 524
>gi|426197032|gb|EKV46960.1| hypothetical protein AGABI2DRAFT_179106 [Agaricus bisporus var.
bisporus H97]
Length = 776
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 160/386 (41%), Gaps = 108/386 (27%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+T+N+NG+R + F ++L++ +DIICFQE K R L + + Y
Sbjct: 31 MRILTWNINGIRTIPQYHPWNSFKDHDEILNNLHSDIICFQEVKSSRAALPKSVAVPPSY 90
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
SFFS +TGYSGVA + R+ + P+ AEEG TGL+
Sbjct: 91 HSFFSFPVK----KTGYSGVAVYSRIST-------VTPLKAEEGLTGLVQPKTPLGPEER 139
Query: 105 -----------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
E + ++ E+ + + +D EGR ++ D G F+L N Y P S
Sbjct: 140 VSRWDNYPPHQEYAAAQSENAYEEDGEVDYQLLDGEGRALVIDFGLFVLINTYCPNDSST 199
Query: 154 DTV---------RIQFKLQFFHVLQKRWEFLL-CQGRRIFVVGDLNIAPAAIDRCDAGPD 203
T R ++K Q+ +L R E L+ + R++ V+GD+N A ID C+
Sbjct: 200 PTTPAAPSPTMSRDKYKKQYHRLLSSRVESLIKNENRQVIVLGDINACAAVIDHCEGDIM 259
Query: 204 FAK---------------------NEFRIWFRSMLVE---SGGSFFDVFRSKHPERREAY 239
++ E R W L +GG D+ R PER+ Y
Sbjct: 260 VSRARKANNLEKGDESGFWDCEGTGEGRRWLSDWLQRHDGTGGPMVDIVRRFWPERKGMY 319
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
TCW + A + NYGTRID+IL PG
Sbjct: 320 TCWNTKLSARETNYGTRIDYILVT---------------------------------PGL 346
Query: 300 APRW--KGGMSTRLEGSDHAPVYMCL 323
P W + ++GSDH PVY+ L
Sbjct: 347 IP-WIEAANIQPEIKGSDHCPVYIDL 371
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGYFKW 622
P C H EP V K G G++F++CAR GP +P+ C +FKW
Sbjct: 696 PKCVAHGEPAKEYTVNKQGANKGKKFWICARPVGPGYDKGRTERLREEVDPQYRCNFFKW 755
Query: 623 AFSKSKQ 629
+ KQ
Sbjct: 756 STDWWKQ 762
>gi|409081894|gb|EKM82253.1| hypothetical protein AGABI1DRAFT_70906 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 641
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 160/386 (41%), Gaps = 108/386 (27%)
Query: 1 MKIVTYNVNGLRQ-----RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+T+N+NG+R + F ++L++ +DIICFQE K R L + + Y
Sbjct: 1 MRILTWNINGIRTIPQYYPWNSFKDHDEILNNLHSDIICFQEVKSSRAALPKSVAVPPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
SFFS +TGYSGVA + R+ + P+ AEEG TGL+
Sbjct: 61 HSFFSFPVK----KTGYSGVAVYSRIST-------VTPLKAEEGLTGLVQPKTPLGPEER 109
Query: 105 -----------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVY------- 146
E + ++ E+ + + +D EGR ++ D G F+L N Y
Sbjct: 110 VSRWDNYPPHQEYAAAQSENAYEEDGEVDYQLLDGEGRTLVIDFGLFVLINTYCPNDSST 169
Query: 147 --GPRADSEDTVRIQFKLQFFHVLQKRWEFLL-CQGRRIFVVGDLNIAPAAIDRCDAGPD 203
P A S R ++K Q+ +L R E L+ + R++ V+GD+N A ID C+
Sbjct: 170 PATPAAPSPTMSRDKYKKQYHRLLSSRVESLIKNENRQVIVLGDINACAAVIDHCEGDIM 229
Query: 204 FAK---------------------NEFRIWFRSMLVE---SGGSFFDVFRSKHPERREAY 239
++ E R W L +GG D+ R PER+ Y
Sbjct: 230 VSRARKANNLEKGDESGFWDCEGTGEGRRWLSDWLQRHDGAGGPMVDIVRRFWPERKGMY 289
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
TCW + A + NYGTRID+IL PG
Sbjct: 290 TCWNTKLSARETNYGTRIDYILVT---------------------------------PGL 316
Query: 300 APRW--KGGMSTRLEGSDHAPVYMCL 323
P W + ++GSDH PVY+ L
Sbjct: 317 IP-WIEAANIQPEIKGSDHCPVYIDL 341
>gi|26348875|dbj|BAC38077.1| unnamed protein product [Mus musculus]
Length = 260
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 122/220 (55%), Gaps = 32/220 (14%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 SCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
K++F+ +LQ R E LL G + ++GDLN A ID CDA
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|26349295|dbj|BAC38287.1| unnamed protein product [Mus musculus]
Length = 260
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 122/220 (55%), Gaps = 32/220 (14%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
K++F+ +LQ R E LL G + ++GDLN A ID CDA
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|26333609|dbj|BAC30522.1| unnamed protein product [Mus musculus]
Length = 266
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 122/220 (55%), Gaps = 32/220 (14%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
K++F+ +LQ R E LL G + ++GDLN A ID CDA
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|302761446|ref|XP_002964145.1| hypothetical protein SELMODRAFT_405855 [Selaginella moellendorffii]
gi|300167874|gb|EFJ34478.1| hypothetical protein SELMODRAFT_405855 [Selaginella moellendorffii]
Length = 589
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 89/142 (62%), Gaps = 7/142 (4%)
Query: 168 LQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227
L+ R +L +GRRI +VG LNI+P ID CD GP F + R WFRS+LV GG+F D
Sbjct: 262 LRGRLCRILKRGRRIIIVGHLNISPYPIDSCDPGPKFDTDPSRQWFRSLLVSEGGAFSDS 321
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSH------NFVT 280
FR HPE EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH F
Sbjct: 322 FRVFHPEIAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQCPDGSHENSSCDGFAE 381
Query: 281 CHVNECDILIDYKRWKPGNAPR 302
C + CDIL+++KR K PR
Sbjct: 382 CGTDMCDILLEFKRAKLDTLPR 403
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 612
W R++ LM ++ CKGH E CV R VKK GP GR F+VC RA+GPAS
Sbjct: 535 WERLKSLMSRNLLSCKGHGETCVVRTVKKAGPNLGRGFYVCTRAKGPAST 584
>gi|242215539|ref|XP_002473584.1| predicted protein [Postia placenta Mad-698-R]
gi|220727304|gb|EED81227.1| predicted protein [Postia placenta Mad-698-R]
Length = 475
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 136/487 (27%), Positives = 192/487 (39%), Gaps = 107/487 (21%)
Query: 18 FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVAT 77
+ S +L + ADIICFQE K R L D+ + Y FFS +KG GYSGVA
Sbjct: 4 YTSTEGILYALGADIICFQEMKSSRATLPRDVALPGPYHGFFSFP--VNKG--GYSGVAV 59
Query: 78 FCRVKSPFSSTEVALPVAAEEGFTGLLE-----------TSGSKIMEGLEDFSKDE---- 122
+ + + A P+ AEEG TG+L+ + + + F D
Sbjct: 60 Y-------ADSRKATPLRAEEGLTGVLQPKPPMSPEERVSMSYPLAHDFDPFPDDNGETD 112
Query: 123 --LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-CQG 179
+DSEGR ++ D G F+L NVY P S+ R+ FK+ F +LQ+R L+ +
Sbjct: 113 SGFDALDSEGRTLVVDFGLFVLINVYCPAETSD--ARLPFKMNFHLLLQERIRKLIEKEH 170
Query: 180 RRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234
R + VVGD+NIA +D + F + R WFR+ L + G DV R PE
Sbjct: 171 REVIVVGDINIAATPLDHAEGNLPSSIATFWDHPAREWFRNWL-DPNGPMVDVIRMFWPE 229
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-KHDLQSHNFVTCHVNECDILIDYK 293
R+ YTCW A + NYG RID++L L KH
Sbjct: 230 RKGLYTCWNMKLQARETNYGARIDYVLVTKGLLPWIKH---------------------- 267
Query: 294 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLV 353
G + L+GSDH P+Y+ L + L + G L
Sbjct: 268 -----------GDIQASLKGSDHCPIYIDLHD---------------ELLLENGETIKLR 301
Query: 354 SVLMKREVAKQGKSC-----KFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY 408
+ + EV + + C +FSG S G E+ + S +L
Sbjct: 302 DAMKQNEVTQPPRLCAKFWDEFSGKQTVLSTFFGKREEMPSQTPSA------SPVLVTTI 355
Query: 409 CSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLS 468
SS K+I S+ + T Q + S + K K GQ
Sbjct: 356 PSS----------KSITRSFSSSRINDQRTSGQSAKRKPSDKGLSSGSNKKNKVDPGQAK 405
Query: 469 LKSFFHK 475
L SFF K
Sbjct: 406 LASFFSK 412
>gi|20071198|gb|AAH26769.1| Apex2 protein [Mus musculus]
Length = 246
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 122/220 (55%), Gaps = 32/220 (14%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
K++F+ +LQ R E LL G + ++GDLN A ID CDA
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|156056543|ref|XP_001594195.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980]
gi|154701788|gb|EDO01527.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 134/282 (47%), Gaps = 57/282 (20%)
Query: 22 RKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRV 81
+ + D + DI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 3 KTMFDILETDILVMQETKIQRKDLRDDMVLVSGWDVFFSLP----KHKKGYSGVAIYTR- 57
Query: 82 KSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE-----------------LL 124
V P+ AEEG TG+L S D KD+ +
Sbjct: 58 ------NSVCAPIRAEEGITGVLTPPNSTT--SFRDLPKDQQIGGYPTNAQLQGYFLDAM 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCVI + FIL VY P + D R +F+L F + L R L+ G+ + +
Sbjct: 110 TLDSEGRCVILEFPAFILIGVYCPA--NRDETRDEFRLAFLNALDTRIRNLVALGKSVLL 167
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESGGS----------- 223
VGDLN+ ID + K NE+ R F +L+ GG
Sbjct: 168 VGDLNVIGDEIDTANLEEQLKKQKLTLNEYISTPARRLFNHLLI--GGKVVGERDEGREP 225
Query: 224 --FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+DV R HP R++ +TCW A N+G+RID+ILC+
Sbjct: 226 QVMWDVCRGFHPARKKMFTCWEQKKNARPGNFGSRIDYILCS 267
>gi|322709548|gb|EFZ01124.1| DNA lyase [Metarhizium anisopliae ARSEF 23]
Length = 608
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 162/672 (24%), Positives = 252/672 (37%), Gaps = 158/672 (23%)
Query: 35 FQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRT----------------GYSGVATF 78
QETK++R++L+ D+V+ G++ FFS + KG GYSGVA +
Sbjct: 1 MQETKIQRKDLQDDMVLVPGWDVFFSLPK-HKKGSVHSDAPAVSIDGLLIIAGYSGVAIY 59
Query: 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLK------------- 125
R S P+ AEEG TG+L K D D+ +
Sbjct: 60 TRNAS-------CAPIRAEEGITGVL--CPPKSTTNFRDLPSDQQIGGYPRPGQLSGIVE 110
Query: 126 ---IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 182
+DSEGRCVI + F+L VY P + D R++F+ FF L R L+ +G+ +
Sbjct: 111 DTVLDSEGRCVILEFPAFVLLGVYCPA--NRDESRVEFRTSFFEALDVRIRNLVAEGKEV 168
Query: 183 FVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG----------- 221
+ GDLN+ + +D + + K I W F ++ E
Sbjct: 169 ILTGDLNVIRSEVDSTNVMENLRKENMTIGEWISLPTRRIFNQLIFEGNIVGDRDEGRQT 228
Query: 222 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 281
+D+ R HP R TCW + N G+RID+ILC+
Sbjct: 229 PVLWDLCRCFHPSRLGMNTCWDTKKNTRPANNGSRIDYILCS------------------ 270
Query: 282 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-GEVPEIPQHSTPSLASR 340
+ + D+ W + L GSDH PV+ + G + S SL
Sbjct: 271 -----NGIRDWFTW---------ANIQEGLMGSDHCPVFATIAGTIAR--NGSQVSLNDV 314
Query: 341 YLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC-------SENVDR 393
P T V L ++++ S L E + D +E
Sbjct: 315 MNPAGMFKNGTRVRELAQKDI------LPLSAKLIPEFDRRQSIRDMFSRKVTSAERSTT 368
Query: 394 SLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHI--SPFH 451
N+ S + +S N S T + D HS + S + I +P
Sbjct: 369 PHNSGSSSFPAEDASQASDNDASSQAMVNTNTSSTDKPAALPHSQPRKRSPDPIDSTPRQ 428
Query: 452 VDRARKKA------KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 505
+ R++ A +K GQ +LK FF V +++ T++
Sbjct: 429 LKRSKSGADPIGSRQKISAGQTTLKGFFKP------------------VGSALPSTAVLA 470
Query: 506 EEVPESHHHSNKIPVTDYSCSV---------HELHGVNSSVCSHDQDEKKGKRFLDKERN 556
+ PE+ + +P T S E S HD + + D+ +
Sbjct: 471 D--PEAQSSAAHLPATKTPPSTKRSSDKLTSKEFVPPISEQPVHDSFIRTAPKSPDRVFD 528
Query: 557 NVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEA 615
+ E W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ E
Sbjct: 529 PIQAKESWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKET 585
Query: 616 N----CGYFKWA 623
CG F W+
Sbjct: 586 GSEWRCGTFIWS 597
>gi|67537132|ref|XP_662340.1| hypothetical protein AN4736.2 [Aspergillus nidulans FGSC A4]
gi|40741588|gb|EAA60778.1| hypothetical protein AN4736.2 [Aspergillus nidulans FGSC A4]
Length = 554
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 152/617 (24%), Positives = 224/617 (36%), Gaps = 147/617 (23%)
Query: 71 GYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEG 114
GYSGVA + R P+ AEEG TG L + G +E
Sbjct: 13 GYSGVAIYTR-------NATCAPIRAEEGLTGTLCPPNSLVSFRDLPEDQQIGGYPTIEQ 65
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
L D +DSEGRCVI + F+L +Y P + D R F+ F ++ R
Sbjct: 66 LSKLKLDAE-TLDSEGRCVILEFPAFVLIGLYCPA--NRDESRDAFRQNFLDLMDARVRN 122
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG--- 221
L+ G+R+FV GD+NI+ ID A DF R F +L++
Sbjct: 123 LVALGKRVFVTGDINISRGEIDAAHAAENIKKGVTTEDDFVSAPARRLFNQLLIDGKVVG 182
Query: 222 --------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 273
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 183 DRDEGREQPVLFDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS---------- 232
Query: 274 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHS 333
+D K W + + L GSDH PVY ++
Sbjct: 233 ----------------LDMKDW------FFDSNIQEGLMGSDHCPVYAVFKDL------- 263
Query: 334 TPSLASRYLPIIRGVQQTLVSVLMKREVAKQGK-----SCKF----SGSLPAESNSTGDT 384
+P+ G Q ++ ++ V K G+ + KF SG L E +
Sbjct: 264 --------IPLNDG-QSHILDIMNPPGVFKNGERQQNYTAKFLLPLSGRLIPEFDRRRSI 314
Query: 385 EDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENC-----RDSANVASHSTI 439
+D + S Q + SN+ES +T N D+ S+ T+
Sbjct: 315 KDMFMRKPSQPSPKTSSP--QNLTACLSNEESSMT-ARTATNTPKPSDADAPASVSNDTL 371
Query: 440 TQGS------SNHISPFHVDR-ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSL 492
+G+ + P + A + +GQ +LK FF + + DN D
Sbjct: 372 QKGTVRKRPVGTEVPPVKRSKSASTQTGAPTIGQSTLKGFFKPKCTLEPKDNMLSKDEGQ 431
Query: 493 NVNN--SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRF 550
++ E+ ++ K P E G V S
Sbjct: 432 GPAEFPFISSQQDVTEQTSKAALEPEKAPTPMTPVLSKEDAGFIDPVASKQ--------- 482
Query: 551 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 610
+W ++ + P C H E C++ KKPGP FGR F++C R GP+
Sbjct: 483 -----------DWSKL--FTKKPPPKCGEHGEECISLKTKKPGPNFGRTFWICPRPLGPS 529
Query: 611 SNPEAN----CGYFKWA 623
N E C F WA
Sbjct: 530 GNKEKGTEWRCSTFIWA 546
>gi|213405473|ref|XP_002173508.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
gi|212001555|gb|EEB07215.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
Length = 554
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 154/323 (47%), Gaps = 50/323 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFG------SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
M+I+T+NVNG+ Q +G S +++ ++ DADIIC QE K ++Q + +G
Sbjct: 1 MRILTWNVNGI-QNPFNYGQWRSKKSYKEVFETLDADIICVQELKAQKQGFPEQFALIEG 59
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
Y+++F T + GYSGV + + + +P AEEG TG+L
Sbjct: 60 YDAYF----TFPLEKKGYSGVGVYVK-------KSLTVPCKAEEGITGILPVPDRHYC-- 106
Query: 115 LEDFSKDELLK-------------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
+D +DE + IDSEGRC++ D F+L VY P E R++F+
Sbjct: 107 YKDAPEDEQIGYYPVNLDKATERLIDSEGRCILLDFQLFVLIGVYCPVNSGEK--RLKFR 164
Query: 162 LQFFHVLQKRWEFLLCQGRR-IFVVGDLNIAPAAIDRCDAGPDFAKNEF-------RIWF 213
F++ L+ R L + +R + ++GD+NI +D D D K +F R W
Sbjct: 165 RLFYNALRDRIIRLTQEAKRNVILLGDINILRDELDTAD-NKDIQKEQFDESIRESREWV 223
Query: 214 RSML-VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
R ML G D R +HP RR +TCW + N+GTRID+I C P L
Sbjct: 224 RGMLQPHPEGLLIDTTRHRHPVRRGMFTCWNTRLNTRPTNFGTRIDYI-CISPALLPW-- 280
Query: 273 LQSHNFV--TCHVNECDILIDYK 293
+Q N + + C + +D+K
Sbjct: 281 MQDANIMPEIMGSDHCPVFLDFK 303
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 448 SPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEE 507
+P ++ KK+K L + LK+ + D N++ TS + +QEE
Sbjct: 380 TPQTTEKVTKKSKNQTLLSMFLKTPKEASARKDSSDKNALLRTS---------SEHTQEE 430
Query: 508 VPESHHHSNKIPVTDYSCSVHELHGVNSSVCS---HDQDEKKGKRFLDKERNNVALLEWR 564
V + + E + V+ S S + ++E+ L +N +L +R
Sbjct: 431 VSTENFQDEE-----------ESYAVSQSTFSSSTYTENEQVKCSTLSSNVDNESLRLFR 479
Query: 565 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR-----AEGPASNPEAN--- 616
+ + +PLC GH EPC VKKPG +GR+F+ C+R E ++ E N
Sbjct: 480 KA--FSKPRVPLCTGHMEPCKKLDVKKPGVNYGRKFWCCSRPVGEVVENSSATNEKNPYQ 537
Query: 617 CGYFKW 622
C +F W
Sbjct: 538 CRFFLW 543
>gi|451852174|gb|EMD65469.1| hypothetical protein COCSADRAFT_169947 [Cochliobolus sativus
ND90Pr]
Length = 632
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 170/712 (23%), Positives = 264/712 (37%), Gaps = 178/712 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFG--------SLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
++I T+NVNG+R + FG + + D+ + DI+ QE K++R++L D+V+
Sbjct: 2 VRITTWNVNGVR---NPFGYKPWSTNRTFNAMFDTLETDIVIMQELKIQRKDLTDDMVLV 58
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSK 110
G++ +FS K + GYSGV F R V P+ AEEG G L S +
Sbjct: 59 QGWDCYFSLP----KHKKGYSGVGIFTR-------QSVCAPIRAEEGVLGALCPPNSTTP 107
Query: 111 IMEGLEDFSKDELL---------------KIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
E E S L +D EGRC++ + F+LF VY P + +
Sbjct: 108 YRELPESASIGGYLTPAQIAALPSDLDAESLDLEGRCLVLEFPAFVLFGVYSPA--NSNG 165
Query: 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFA 205
+R F++ F L+ R L G+ + + GDLN++ ID A ++
Sbjct: 166 LRDGFRIGFLIALETRIRNLTKMGKNVVLTGDLNVSRDLIDTARADEHIRSEGMTHEEYL 225
Query: 206 KNEFRIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
R F +L+ +D+ R HP+R +T W A N+G
Sbjct: 226 STPNRRIFNQLLLNGKVPGQRDEGREEPVLYDLCREFHPDREGMFTHWEQKINARPSNFG 285
Query: 255 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314
+RID ILC+ I K W + L GS
Sbjct: 286 SRIDFILCS--------------------------ITIKDW------FQDANIQEGLMGS 313
Query: 315 DHAPVYMCLGE-VPEI----------------------------------PQHSTPSLAS 339
DH PVY L + VP + P P+L+
Sbjct: 314 DHCPVYAVLKDKVPVLRTSGPDSVEEEVHILDLMNPAGMFKDGVRQRDYDPAKDVPALSG 373
Query: 340 RYLPII---RGVQQTLV--SVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 394
+ LP R ++ S K + + A+ ST T + E +DR
Sbjct: 374 KLLPEFTKRRNIRDMFSKKSTPPKPNPNPTPAVAQLDVTTKADVASTASTAE--EQMDRD 431
Query: 395 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 454
L ++ + + + K+ E R SA+ + I +G ++
Sbjct: 432 LALAIEASKADMLADTENKTTFSQSPLKSAEKRRASASASPGKPIKRGKPGALA------ 485
Query: 455 ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 514
+ K GQ SLK FF S + D + D + +V++ T + SQ H
Sbjct: 486 ---VSTKGNKGQQSLKGFFQTHSKST--DPITPNDAAPSVSSLKTTDTPSQNATEMPHPP 540
Query: 515 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 574
S P T N S S + ++ R W ++ + +
Sbjct: 541 SP--PST-----------ANESFDSDPRASQEASR-----------EGWTKL--FSKKAA 574
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
P C+ H E C+ KKPG GR+F+VC R GP+ + E CG F W
Sbjct: 575 PRCE-HGEHCITLTTKKPGVNCGRQFWVCPRPIGPSGHKEVGTQWRCGTFIW 625
>gi|168008755|ref|XP_001757072.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691943|gb|EDQ78303.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 536
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 163/349 (46%), Gaps = 74/349 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF-----DADIICFQETKLRRQELKSDLVMADGY 55
M+I ++NVNGLR + + ++ +ADI+CFQE K++ ++L+ + DGY
Sbjct: 82 MRIFSWNVNGLRTTLKDVAACHTSASNYFCQVLNADIVCFQEAKIQEEKLEKWIACVDGY 141
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
S ++ +R + GYSGV T+ + E P+ A+ + G
Sbjct: 142 HSHWAFSRE----KKGYSGVVTYVK--------EALSPLDAKADWLG------------- 176
Query: 116 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT--VRIQFKLQFFHVLQKRWE 173
E+ S ++L +EGR + TDHG F+L NVY P + D R+ FK+++ L++ +
Sbjct: 177 ENSSAEDLC---NEGRLMCTDHGSFVLLNVYVPNSGDGDKGRPRLDFKMRYLKALEQTCD 233
Query: 174 FLLCQGRRIFVVGDLNIAPAAID---RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
L+ G+ I +VGD N+A ID R ++ E R W L + D++R
Sbjct: 234 DLVRSGKHIVIVGDFNVAHKDIDVHSRWKVEEIYSLEE-REWLDGFL----SRYIDLYRH 288
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 290
HP+ + ++ W + A N G RID+ +C + F+T V E DI+
Sbjct: 289 FHPDEKNIFSVWDQKSDARTRNEGLRIDYAIC------------NEGFLT-EVLETDIVK 335
Query: 291 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 339
K+W SDHA V + L E P +P H P+L+S
Sbjct: 336 MQKQW------------------SDHAAVVVTLKEQPNLPPHPAPALSS 366
>gi|451997504|gb|EMD89969.1| hypothetical protein COCHEDRAFT_1178143 [Cochliobolus
heterostrophus C5]
Length = 632
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 164/712 (23%), Positives = 264/712 (37%), Gaps = 178/712 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFG--------SLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
++I T+NVNG+R + FG + + D + DI+ QE K++R++L D+V+
Sbjct: 2 VRITTWNVNGIR---NPFGYKPWSTNRTFNAMFDILETDIVIMQELKIQRKDLTDDMVLV 58
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSK 110
G++ +FS K + GYSGV F R V P+ AEEG G L S +
Sbjct: 59 QGWDCYFSLP----KHKKGYSGVGIFTR-------QAVCAPIRAEEGVLGALCPPNSTTP 107
Query: 111 IMEGLEDFSKDELL---------------KIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
E E S L +D EGRC++ + F+LF VY P + +
Sbjct: 108 YRELPESASIGGYLTPTQIATLPPDLDAESLDLEGRCLVLEFPAFVLFGVYSPA--NSNG 165
Query: 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP----------DFA 205
+R F++ F L+ R L G+++ + GDLN++ ID A ++
Sbjct: 166 LRDGFRIGFLIALETRIRNLTKMGKKVILTGDLNVSRDLIDTARAEEHIRTEGMTHDEYL 225
Query: 206 KNEFRIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
R F +L+ +D+ R HP+R +T W A N+G
Sbjct: 226 NTPNRRIFNQLLLNGKVPGQRDEGREEPVLYDLCREFHPDREGMFTHWEQKINARPSNFG 285
Query: 255 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314
+RID ILC+ I K W + L GS
Sbjct: 286 SRIDFILCS--------------------------ITIKDW------FQDANIQEGLMGS 313
Query: 315 DHAPVYMCLGE-VPEI----------------------------------PQHSTPSLAS 339
DH PVY L + VP + P P+L+
Sbjct: 314 DHCPVYAVLKDKVPVLRTSGSDSVEEEVHILDLMNPAGMFKDGVRQRDYDPAKDIPALSG 373
Query: 340 RYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLN 396
+ L R ++ + + + A++ E +DR L
Sbjct: 374 KLLSEFTKRRNIRDMFSKKPAPPKPNPKPTPAVARPDVTAKAEVASTASTVEEQMDRDLA 433
Query: 397 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR 456
++ + + + + K+ E R SA+ + I +G ++
Sbjct: 434 LAIEASKADMLANTENKLTNSQSPLKSAEKRRASASASPGKPIKRGKPGALA-------- 485
Query: 457 KKAKKSQLGQLSLKSFF--HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 514
K GQ SLK FF H + S + N+++ S + TDT+ SQ +H
Sbjct: 486 -VPTKGNKGQQSLKGFFQTHSKPADSVEPNDAVPSMS---SFEATDTA-SQNATDMAHPS 540
Query: 515 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 574
S +++ S D D + + + R W ++ + +
Sbjct: 541 SPS----------------STANKSFDSDPRASQ---ETSREG-----WTKL--FSKKAA 574
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
P C+ H E C+ R KKPG GR+F++C R GP+ + E CG F W
Sbjct: 575 PRCE-HGEHCITRTTKKPGVNCGRQFWICPRPIGPSGHKEVGTQWRCGTFIW 625
>gi|452836974|gb|EME38917.1| hypothetical protein DOTSEDRAFT_180911 [Dothistroma septosporum
NZE10]
Length = 661
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 146/303 (48%), Gaps = 53/303 (17%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R S S + D ++DI+ QE K++R++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYPPWNTTRSYSSMFDILESDIVVMQELKIQRKDLRDDMVLVDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGSKIMEG 114
+ +FS K + GYSGV + R P+ AEEG G+L + SG + +
Sbjct: 61 DCYFSLP----KHKKGYSGVGIYTR-------NATCAPIRAEEGLLGVLPSPSGIRYRDL 109
Query: 115 LEDFSKD-------------ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
E+ S + +D+EGRCV+ + F+LF VY P A+S R F+
Sbjct: 110 PEEESIGGYPSVLQAAELGVDAAALDAEGRCVVVEFTAFVLFGVYSP-ANSMGN-RDDFR 167
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-----RI 211
F + L R L+ +G+ + +VGDLN++ ID D K E+ R
Sbjct: 168 FGFINALDCRIRNLVKEGKNVVLVGDLNVSRHEIDSAPTLEDIRKGLGTREEYLMSPNRR 227
Query: 212 WFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
F MLV+ G +D R HP+R+ YTCW + T A NYG RID +
Sbjct: 228 IFNQMLVDGEVLDERDVGREKGVLWDTSRLFHPDRKGMYTCWETKTNARPGNYGARIDFV 287
Query: 261 LCA 263
L +
Sbjct: 288 LVS 290
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
PLC+GH EPC + KK G GR F++CAR GP+ E CG F W
Sbjct: 574 PLCEGHSEPCKSMQTKKKGSNQGRSFWMCARPLGPSGEKEKGTQWRCGTFIW 625
>gi|403415135|emb|CCM01835.1| predicted protein [Fibroporia radiculosa]
Length = 576
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 157/635 (24%), Positives = 249/635 (39%), Gaps = 138/635 (21%)
Query: 45 LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
L+ D+ + Y +FFS +KG GYSGVA + ++ +P+ AEEG G L
Sbjct: 2 LQRDVAVPGPYHAFFSFP--VNKG--GYSGVAVYTNSRN-------VVPLKAEEGLLGTL 50
Query: 105 E-----TSGSKIMEGLE-----DFSKDE-------LLKIDSEGRCVITDHGHFILFNVYG 147
+ + +I D DE +D EGR ++ D G F+L NVY
Sbjct: 51 QPKPPLSEEERISTAYPRAHHIDAFPDEADETSSCFDALDFEGRTLVLDFGLFVLINVYC 110
Query: 148 PRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAG----- 201
P S+ R+ FK+ F +LQ+R L+ + R + V+GD+NIA A +D D
Sbjct: 111 PAETSD--ARLPFKMNFHLLLQERVRKLIEEEHREVIVLGDINIAAAPLDHGDGHLPSNV 168
Query: 202 PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
F + R WFR L G DV RS P+R+ +TCW A + NYG RID++L
Sbjct: 169 ATFWDHPARQWFRQWL-NPNGPMIDVIRSFWPDRKGLFTCWNMKLQARETNYGARIDYVL 227
Query: 262 CAGPCLHQ-KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
L KH G + L+GSDH P++
Sbjct: 228 ITRGLLPWIKH---------------------------------GDIQASLKGSDHCPIF 254
Query: 321 MCL--------GEVPEIPQ-------HSTPSLASRYLPIIRGVQQTLVSVLMKREVAK-- 363
+ L GE+ ++ P L++++ G Q L + KR ++
Sbjct: 255 VDLHDEITLESGELIKLSDAMKQKEGMQAPRLSAKFWEEFSGKQTMLSTFFGKRNSSQLQ 314
Query: 364 --QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFT 421
+ FS LP + + ++ +G+ S+SN + T
Sbjct: 315 TFDETTANFSVPLPRSPQFSSSSVPLTD---------------EGMSISTSNSNAS---T 356
Query: 422 KTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRS-NVS 480
+TI N + +AS + S + K +K++ GQ + SFF K + + S
Sbjct: 357 ETIRNSKPLRLIASAPLKRKPSEKSFT-----SGSTKKRKAEAGQSKIASFFSKPTISKS 411
Query: 481 HDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSH 540
+ D + + ++V S P S H + DY + EL + +
Sbjct: 412 QPKEVIVLDEADSFPDAVPSCS-PPSTFPSSDHQLD----ADYRLAC-ELSATQVDLITQ 465
Query: 541 DQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 600
+ + N + W + ++ P C H EP V K GP G++F
Sbjct: 466 SEASQPNA----STSQNTSKNAWSDLFAPLQP--PRCVTHGEPAKLYTVNKQGPNKGKKF 519
Query: 601 FVCARAEGPA------------SNPEANCGYFKWA 623
++C+R GP N + C +FKWA
Sbjct: 520 YICSRPVGPGYDKGKGERPRDEVNHQYRCNFFKWA 554
>gi|346977469|gb|EGY20921.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium dahliae
VdLs.17]
Length = 550
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 157/370 (42%), Gaps = 89/370 (24%)
Query: 2 KIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R Q + + + D +ADI+ FQETK++R++LK D+V+ G++
Sbjct: 3 RITTWNVNGIRNPFGYQPWREKRTFEAMFDILEADIVIFQETKIQRKDLKDDMVLIPGWD 62
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL------------ 104
+FS K + GYSGV + R P+ AEEG G+L
Sbjct: 63 VYFSLP----KYKKGYSGVVIYTR-------NATCCPIRAEEGILGVLCPPDSTTRFRDL 111
Query: 105 ----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ G E L S + +DSEGRCVI + F+L Y P + D R +F
Sbjct: 112 PEEQQIGGYPTAEQLS--SDIDEATLDSEGRCVILEFPAFVLIGTYSPA--NRDESRQEF 167
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----------R 210
+L + L R L+ G+++ + GDLN++ + ID + K + R
Sbjct: 168 RLGYLSALDARVRNLVAAGKQVILTGDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIPSR 227
Query: 211 IWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
F +L E +D+ R HP+R+ +TCW + N G RID+
Sbjct: 228 RLFNQLLFEGQVQGDRDPGREQPVLWDICRCFHPDRKGMFTCWDTKRNTRPANNGARIDY 287
Query: 260 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 319
+LC+ F+ ++ E L GSDH PV
Sbjct: 288 LLCSAGI--------KDWFIDSNIQEG------------------------LHGSDHCPV 315
Query: 320 YMCLGEVPEI 329
Y LG+ ++
Sbjct: 316 YGTLGDTVKV 325
>gi|385145223|emb|CCD57806.1| putative DNA lyase apn2 protein [Neurospora terricola]
Length = 589
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 155/646 (23%), Positives = 248/646 (38%), Gaps = 138/646 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ +AD++ QETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDTLEADVVVMQETKIQRKDLRDDMVLVPGWDVYFSLP----KYKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL---------------ETSGSKIMEGLEDFSKDELLKIDS 128
+ P+ AEEG TG+L + G G DE L +DS
Sbjct: 54 ----SSKCCPIRAEEGITGVLCPPNSSTKFRDLPADQQIGGYPTPGQLSSDIDEAL-LDS 108
Query: 129 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 188
EGRCVI + F+L VY P + D R +F+ F + R L+ G+ +F+ GDL
Sbjct: 109 EGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVAMGKEVFLCGDL 166
Query: 189 NIAPAAIDRCDAG-PDFAKNEFRIW----------FRSMLVESG------------GSFF 225
NI +D AG P+ K E F + +V G +
Sbjct: 167 NIIRNEMDT--AGLPERLKKEAMTLDDFISTPSRRFLNQVVFGGRVLGEPDEGREKPVLW 224
Query: 226 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNE 285
D+ R HP R YTCW + A N+G+RID++LC FV ++ E
Sbjct: 225 DLCREFHPRRPGMYTCWETRKNARPGNFGSRIDYVLCTSGI--------KDWFVDANIQE 276
Query: 286 CDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPII 345
L GSDH PVY +G+ T S +PI
Sbjct: 277 G------------------------LLGSDHCPVYATIGD--------TVSKDGTTIPIT 304
Query: 346 RGVQQTLVSVLMKREVAKQGKSC------------------------KFSGSLPAESNST 381
+ + +R+ K C K + P ++
Sbjct: 305 DIMNPEGMFKDGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKKKTPSTTPKSASPA 364
Query: 382 GDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQ 441
D +D S+ + S LQ S+ + + + E + Q
Sbjct: 365 ADGQDTSDPTNTSYTTAHAIAALQEAASSAPSPKQPLSQSTPTEPALSQTSPLPKRRAEQ 424
Query: 442 GSSNHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTSLNV 494
+S+ P V A K S++G Q +L FF ++ V+ D+ + S +
Sbjct: 425 PASSIRPPKKVKAAFTKQPSSKIGPGPSQSTLMGFFKPKTPTPTVNPDERPGPLNGSNHY 484
Query: 495 NNSVTDTSLSQEEV------PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEK-KG 547
++ +T+ E P+ ++ I D + V S +E+ KG
Sbjct: 485 TAAIAETTTRNEPSPAKGSQPKRSFEADDIEEWDEDAVESKTSPVTYKATSAAMEEEGKG 544
Query: 548 KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPG 593
K D +N + W ++ L + +P C+ H + C + V KKPG
Sbjct: 545 KTIFDPIQNKES---WSKL--LGKRVVPKCE-HGDDCQSLVTKKPG 584
>gi|409040708|gb|EKM50195.1| hypothetical protein PHACADRAFT_153651 [Phanerochaete carnosa
HHB-10118-sp]
Length = 496
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 143/296 (48%), Gaps = 45/296 (15%)
Query: 24 LLDSFDADIICFQ----ETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+LD ADIICFQ E K R L D+ + D Y SFFS + + GYSGVA +
Sbjct: 7 ILDEVGADIICFQGSDLEMKTTRAALPRDVAIPDNYTSFFSFPVS----KGGYSGVAVYT 62
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSG--------SKIMEGLEDFS--KDE------- 122
+ S+EV +P+ AEEG +G L+ S+ + D + DE
Sbjct: 63 K------SSEV-VPLKAEEGLSGRLQPKPPLSAEERISQTYPSVNDVAAYPDEDGDVPGT 115
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 182
+DSEGR ++ D G F+L NVY P S+ R+ FK+ + ++ +R + +GR +
Sbjct: 116 FDALDSEGRALVLDFGLFVLVNVYCPNETSD--ARLPFKMNYHLLVAERVRRFIDEGREV 173
Query: 183 FVVGDLNIAPAAIDRCDAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERRE 237
V+GD+NI D CD + F R WFR L + G D R+ P R+
Sbjct: 174 IVMGDMNICATPQDHCDGHLTSVREVFWDHPARAWFRHWL-DPDGPMVDAVRTFWPARKG 232
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-KH-DLQSHNFVTCHVNECDILID 291
+TCW T A + NYGTR+D+IL L KH D+Q + H C I ID
Sbjct: 233 MFTCWNLRTQARETNYGTRVDYILVTKGLLKWVKHGDIQPSVKGSDH---CPIYID 285
>gi|297735010|emb|CBI17372.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 70/78 (89%)
Query: 553 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 612
+++N++AL+EW+RIQQLM+ SIPLCKGH EPCV+R+ KKPGP GRRF+VCARAEGPASN
Sbjct: 34 RDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEGPASN 93
Query: 613 PEANCGYFKWAFSKSKQK 630
PE NCGYFKWA SKS+ +
Sbjct: 94 PETNCGYFKWAASKSRHR 111
>gi|408392228|gb|EKJ71586.1| hypothetical protein FPSE_08225 [Fusarium pseudograminearum CS3096]
Length = 600
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 140/304 (46%), Gaps = 57/304 (18%)
Query: 2 KIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
++ T+NVNG+R Q + + + + D +ADI+ QETK+++++L ++V+ G++
Sbjct: 4 RLTTWNVNGIRNPFGYQPWREKRTFQSMFDILEADIVVMQETKIQQKDLLDEMVLVSGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
FFS K + GYSGVA + R P+ AEEG TG+L S
Sbjct: 64 VFFSLP----KHKKGYSGVAIYTR-------NSTCAPIRAEEGITGILTPPKSTTR--YR 110
Query: 117 DFSKDELL----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
D +D+ + +DSEGRCVI + F+LF +Y P + D R F
Sbjct: 111 DLPEDQQIGGYPRPGQLDGIIDEATLDSEGRCVILEFPGFVLFGIYSPA--NRDETRDDF 168
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W------ 212
+L F L R L+ G+++ + GDLNI + +D + K F + W
Sbjct: 169 RLGFLQALDVRIRNLVAAGKQVVLTGDLNIVRSEVDSTNVSETLRKGNFDLSEWMNMPAR 228
Query: 213 --FRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
F ++ E +D+ R HPER TCW + N G+RID+
Sbjct: 229 RIFNQLIFEGSVLGERDQGRQAPVLWDLCRYFHPERAGMNTCWDTKRNTRPANNGSRIDY 288
Query: 260 ILCA 263
+LC+
Sbjct: 289 VLCS 292
>gi|145346298|ref|XP_001417629.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577856|gb|ABO95922.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 474
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 162/355 (45%), Gaps = 60/355 (16%)
Query: 21 LRKLLDSFDAD--IICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78
++ L D+ +D +IC QETKL L +G++ + +S+ R GYSGVA +
Sbjct: 1 MKALFDALGSDLKVICLQETKLSSSGDVERLERVEGWDGAHAVCESSNH-RVGYSGVAVY 59
Query: 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG-LEDFSKD--ELLKIDSEGRCVIT 135
R S E+ P + E G + S + G + F+ D +ID EGR +
Sbjct: 60 WR------SNEI-CPTSIERGVCAKGDAGESTMWAGEIAPFADDATRAKEIDGEGRALWV 112
Query: 136 DHGHFILFNVY------GPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
D G F+L VY P D + R FK F L+ R++ L +GR + + GD N
Sbjct: 113 DFGEFVLCTVYVPAVFGDPAVDEKTAERAAFKRDFLSALEARYKSLRERGRNVILCGDWN 172
Query: 190 IAPA-AIDRCDAGPDFA--KNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNT 246
IAP+ +DR D P+ +N R W + L +G + DVFR P +A+TCW +
Sbjct: 173 IAPSWKLDRADEDPNAVEPRNPSRDWLAAQL--AGDAMVDVFREFFPTLGDAFTCWNVAS 230
Query: 247 GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG 306
GA+ NYG+RID+ LC D + KR + G
Sbjct: 231 GAQLSNYGSRIDYFLC------------------------DRAVTLKRVR-------GVG 259
Query: 307 MSTRLEGSDHAPVYMCLGEV---PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMK 358
++ + EGSDHAPVY+ L E Q + PSLA L G Q T+ S+ +
Sbjct: 260 VAQKFEGSDHAPVYLELEESMWRRRDSQQTPPSLAISML--YPGRQTTVDSIFAR 312
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 566 IQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEGPASNPEANCGYFKW 622
+ + + P CK H E C R VKK P GR FF C R G +NP+ +CG+F W
Sbjct: 411 MNTFAKMAPPKCK-HGETCKVRTVKKKESPHCGRVFFCCPRPAGARTNPDCDCGFFLW 467
>gi|164429579|ref|XP_964325.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
gi|157073536|gb|EAA35089.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
Length = 630
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 160/688 (23%), Positives = 267/688 (38%), Gaps = 174/688 (25%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+++ + D+ DADI+ QETK++R++L+ D+V+ G++ +F+ + GYSGVA +
Sbjct: 26 TVKAMFDTLDADIVVIQETKIQRKDLRDDMVLVPGWDVYFNLPTY----KKGYSGVAIYT 81
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGH 139
R + P+ AEEG TG+L S D D+ + + +D
Sbjct: 82 R-------SSKCCPIRAEEGITGVLCPPNSSTK--FRDLPADQQIGGYPTPGQLSSDIDE 132
Query: 140 FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD 199
L DSE RI+F+ F + R L+ G+ +F+ GDLNI +D
Sbjct: 133 AQL--------DSEG--RIEFRQAFIDAMDARVRNLVSLGKEVFLCGDLNIIRNEMDTAG 182
Query: 200 AGPDFAKNEFRI---------WFRSMLVESG------------GSFFDVFRSKHPERREA 238
K + F + +V G +D+ R HP+R
Sbjct: 183 LPEQLKKEAMTLDQFISTPSRRFLNQIVFGGRVIGEPDEGREKPVLWDLCREFHPKRPGM 242
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 298
YTCW + A N+G+RID++LC+ FV ++ E
Sbjct: 243 YTCWETRKNARPGNFGSRIDYVLCSSGIKDW--------FVDANIQEG------------ 282
Query: 299 NAPRWKGGMSTRLEGSDHAPVYMCLGE--------VP------------------EIPQH 332
L GSDH PVY + + +P E Q
Sbjct: 283 ------------LLGSDHCPVYATISDSVRRDGVIIPITDIMNPEGMFKNGQRQREWSQK 330
Query: 333 STPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVD 392
++R +P +Q++ + +K+ K + P + D++D S++ +
Sbjct: 331 DCLPTSARLIPEF-DRRQSIKDMFVKK---------KTPSNTPKSATPAADSQDISDSPN 380
Query: 393 RSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHV 452
S + +LQG S+S+ S ST T + + SP
Sbjct: 381 TSSITVNATTVLQGTASSASSPR----------------QWLSQSTATDPALSQTSPVPK 424
Query: 453 DRARKKA----------------KKSQLG----QLSLKSFFHKRS---NVSHDDNNSITD 489
RA + A S+ G Q +L F ++ V+ D+ + +
Sbjct: 425 RRAEQPAPYTRPPKKAKAALAKQPSSKTGPGPSQSTLMGFIKAKTPTPTVNPDERHGPIN 484
Query: 490 TSLNVNNSVTDTSLSQEEV------PESHHHSNKIPVTDYSCSVHE----LHGVNSSVCS 539
+ + + +T+L E P+ + + D + H+ +G NS+
Sbjct: 485 GNNHSPVTAAETALRNEPFTAKGSQPKQAFEAGNVEEWDGNAVEHKTNSTTYGENSTAM- 543
Query: 540 HDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 599
+DE KGK D +N V+ W ++ L + +P C+ H E C + V KKPG GR
Sbjct: 544 --EDEGKGKTIFDPIQNKVS---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRS 595
Query: 600 FFVCARAEGPASNPEAN----CGYFKWA 623
F++CAR GP+ N E C F W+
Sbjct: 596 FYMCARPLGPSGNKETGTEFRCKTFIWS 623
>gi|256086538|ref|XP_002579455.1| ap endonuclease [Schistosoma mansoni]
Length = 426
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 182/430 (42%), Gaps = 85/430 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I ++N+NGLR S L+ +LDS +DIIC QETK ++ + AD Y +FS
Sbjct: 4 VRICSWNINGLR---SIQHPLKSILDSLTSDIICIQETK-TTPDISREFAFADNYNGYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEV---ALPVAAEEGFTGLLETSGSKIMEGLED 117
+TGYSG A FCR +P T+ + E G ++ +
Sbjct: 60 ----HSIHKTGYSGTAVFCR--NPLKPTKTFHSLNDILVESISCQNNSIDGWGFLKRKLN 113
Query: 118 FSKDELLKIDSEGRCVITDHGH--------------FILFNVYGPRADSEDTVRIQFKLQ 163
S E +D+EGR + I+ ++Y PR + E+ R+ +K
Sbjct: 114 ISHTEARNLDAEGRVLGLQFSTDIFTTFRTPDEIRPLIVLSIYFPRLNPENVERLNYKHL 173
Query: 164 FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC---DAGPDFAKNEFRIWFRSMLVES 220
F +Q E LL + + + GD NI ID C + D N FR WF +L+E
Sbjct: 174 FQSAVQLCIESLLIENN-VVIAGDFNICHKMIDHCAPDELMMDKFSNSFRQWFDQLLIEE 232
Query: 221 GGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
F D+FR HP R+ A+TCW S T A Q NYG R+D+IL
Sbjct: 233 QQDVSLDNQSSVGLRRFVDIFRLLHPHRKNAFTCWSSRTNARQTNYGVRLDYIL------ 286
Query: 268 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 327
D++ +T +++ +I + + + + GSDH P+Y ++P
Sbjct: 287 ---FDMKLVEIITT-ISDNNI---------------QADLMSHINGSDHCPIY---ADLP 324
Query: 328 E------IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNST 381
I +S P S Y P + Q L S +M + +K K S++T
Sbjct: 325 YFYNSDLIFSYSFPPKCSHYWPQCQKKQMDLESFVMSKSHSKVTKQA-------FTSHNT 377
Query: 382 GDTEDCSENV 391
+ C NV
Sbjct: 378 TTSVSCVRNV 387
>gi|261193611|ref|XP_002623211.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
gi|239588816|gb|EEQ71459.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
Length = 629
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 139/296 (46%), Gaps = 47/296 (15%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ DADI+ FQETK+++++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALDADIVIFQETKIQKKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSD----KGRTGYSGVATFCRVKSPFSSTEV--ALPVAAEEGFTGLLETSGS 109
+ FFS + S + G +G+ SPF S LP A+ G G
Sbjct: 62 DCFFSLPKNSKCCPIRAEEGITGILCLPASVSPFPSPTSFRDLPEEAQIG--------GY 113
Query: 110 KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
E L S + +DSEGRC+I + F+L VY P + D R F+ F ++L
Sbjct: 114 PTAEQLA-LSDVDASTLDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNILD 170
Query: 170 KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVE 219
R L+ G+R+ V GDLNI + ID A +F R F ++
Sbjct: 171 ARVRNLVAMGKRVIVTGDLNICGSEIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLVY- 229
Query: 220 SGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 262
GG D+ R HP+R YTCW A NYG+RID++LC
Sbjct: 230 -GGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSRIDYVLC 284
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 459 AKKSQLGQLSLKSFFHKRSN-----VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 513
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 455 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 504
Query: 514 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 564
N P + +SC + G + S++ D R D N + W
Sbjct: 505 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 561
Query: 565 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 620
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 562 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 619
Query: 621 KWA 623
W+
Sbjct: 620 IWS 622
>gi|425906911|gb|AFY11135.1| DNA lyase [Penicillium roqueforti]
Length = 658
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 141/326 (43%), Gaps = 76/326 (23%)
Query: 1 MKIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R S + + D +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 VRITTWNVNGIRNPFSYEPWRGTRTFESMFDILEADIVILQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI---- 111
+ +FS R + GYSGV + R P+ AEEG TG+L S
Sbjct: 63 DCYFSLPRV----KKGYSGVVIYTR-------NATCSPIRAEEGITGVLCPPKSSTSFCS 111
Query: 112 ----------------------MEGLEDFSKDELL-----------KIDSEGRCVITDHG 138
+EG + + E + +DSEGRCVI +
Sbjct: 112 LPEEQQIGGYPTLDQLSRPAMNLEGPDSEEEQEYVSSVPNTTIDAPNLDSEGRCVILEFP 171
Query: 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC 198
F+L VY P E+ R F++ F +VL R L+ G+ + V GD+NI+ ID
Sbjct: 172 AFVLIGVYCPAYRDEN--RDTFRMDFLNVLDSRIRNLIAMGKNVVVAGDINISKQGIDAA 229
Query: 199 DA----------GPDFAKNEFRIWFRSMLVES-----------GGSFFDVFRSKHPERRE 237
+F R F ++ + FDV RS HP R
Sbjct: 230 HGIEAIRKGTMTEEEFISAPSRRLFNHLISDGVVIGERDKGREDPVLFDVCRSFHPGRAG 289
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
YTCW A NYG+RID++LC+
Sbjct: 290 MYTCWDQKLNARPGNYGSRIDYVLCS 315
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 462 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 521
S GQ L FF R+ +S T + + ++ S T SL+ E +S ++
Sbjct: 489 SAAGQKMLTGFFKPRAVISE-----TTQSPIPLSGSST-PSLNPEPSGQSQEKGKYPEIS 542
Query: 522 DYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKG 579
S + E + S + ++F+D + V+ +W ++ + +P C G
Sbjct: 543 LQSPGLQEESIREEADISTEG--PTARKFIDDTIIDPIVSKEDWSKL--FTKKPVPPCDG 598
Query: 580 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
H+EPC+ KKPG GR F++C R GP+ E C F WA
Sbjct: 599 HQEPCIRLTTKKPGMNRGRSFWICPRPLGPSGEKEKGTQWRCPTFIWA 646
>gi|389646177|ref|XP_003720720.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
70-15]
gi|351638112|gb|EHA45977.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
70-15]
Length = 656
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 158/365 (43%), Gaps = 85/365 (23%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I ++NVNG+R S + + + + D +ADI+ QE K++R++L+ D+V+ G+
Sbjct: 3 IRITSWNVNGIRNPFSYEPWRENRTFKSMFDILEADIVVIQEAKIQRKDLQDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIME 113
+ +FS K + GYSGVA + R + P+ AEEG TG+L S +K E
Sbjct: 63 DVYFSLP----KFKKGYSGVAIYTR-------SSKCSPIRAEEGITGILCPPNSTTKFRE 111
Query: 114 GLEDFS------KDELLKI------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
D D+L I DSEGRC+I + F+L VY P + D R F+
Sbjct: 112 LSPDQQIGGYPRPDQLSDIIDEATLDSEGRCMILEFPAFVLIGVYSPA--TRDETRTDFR 169
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI---------W 212
F + R L+ G+++ + GDLNI +D K E I
Sbjct: 170 QAFHKAMDARVRNLVAMGKQVVLTGDLNIIRNELDTAGILERLRKEEMTIDEFFSTPSRR 229
Query: 213 FRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
F + +V G +D+ R HP+R YTCW + A N+G+RID++
Sbjct: 230 FLNHMVFGGTVVGGRDEGREEPVMYDLGREFHPDRIGMYTCWETRKNARPGNFGSRIDYV 289
Query: 261 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
LC+ F+ ++ E L GSDH PVY
Sbjct: 290 LCSA--------GMKDWFIDANIQEG------------------------LLGSDHCPVY 317
Query: 321 MCLGE 325
L +
Sbjct: 318 ATLSD 322
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 428 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 487
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 454 KSSASNSRPQKKTKVSTSNTAKNSVDRA--------PGQKSLTGFFKPKNPISTPATDG- 504
Query: 488 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 547
TS+ S T S + + KIP S + G + + + G
Sbjct: 505 ERTSIRTTPSPTKCS---------NASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGG 555
Query: 548 KRF-LDKERNNVALLE--------------WRRIQQLMETSIPLCKGHKEPCVARVVKKP 592
+ F KE + A L W ++ L + +P C+ H EPC++ KKP
Sbjct: 556 RSFNSGKEDDTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKP 612
Query: 593 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
G GR F++C R GP+ E CG F W+
Sbjct: 613 GINCGRSFYICGRPLGPSGEKEKGTEWRCGTFIWS 647
>gi|302419937|ref|XP_003007799.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
gi|261353450|gb|EEY15878.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
Length = 334
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 161/374 (43%), Gaps = 84/374 (22%)
Query: 2 KIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R Q + + + D +ADII FQETK++R++LK D+V+ G++
Sbjct: 3 RITTWNVNGIRNPFGYQPWREKRTFEAMFDILEADIIIFQETKIQRKDLKDDMVLIPGWD 62
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIME- 113
+FS + + GYSGV + R P+ AEEG G+L S +K +
Sbjct: 63 VYFSLPKYK---KAGYSGVVIYTR-------NATCCPIRAEEGIFGVLCPPDSSTKFRDL 112
Query: 114 ----------GLEDFSKD-ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
E S D + +DSEGRCVI + F+L Y P + D R +F+L
Sbjct: 113 PKEQQIGGYPTAEQLSSDIDEATLDSEGRCVILEFPAFVLIGTYSPA--NRDESRQEFRL 170
Query: 163 QFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-------- 212
+ L R L+ G+++ + GDLN++ + ID + K + + W
Sbjct: 171 GYLSALDARVRNLVAAGKQVILTGDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIPSRRL 230
Query: 213 FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
F +L E +D+ R HP+R+ +TCW + N G RID++L
Sbjct: 231 FNQLLFEGQVRGDRDPGREQPVLWDICRCFHPDRKGMFTCWDTKRNTRPANNGARIDYLL 290
Query: 262 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 321
C+ F+ ++ E L GSDH PVY
Sbjct: 291 CSAGI--------KDWFIDSNIQEG------------------------LHGSDHCPVYG 318
Query: 322 CLGEVPEIPQHSTP 335
LG+ ++ P
Sbjct: 319 TLGDTVKVDGQGCP 332
>gi|407918296|gb|EKG11567.1| Exodeoxyribonuclease III xth [Macrophomina phaseolina MS6]
Length = 1051
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 156/372 (41%), Gaps = 97/372 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFG--------SLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
++I T+NVNG+R + FG + + D +ADI+ QE K++R++L+ D+V+
Sbjct: 4 LRITTWNVNGIR---NPFGYQPWRDKRTFEAMFDLLEADIVIMQELKIQRKDLRDDMVLV 60
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM 112
G++ FFS K + GYSGVA + R T P+ AEEG G+L GS
Sbjct: 61 PGWDCFFSLP----KHKKGYSGVAIYTR-------TSKCAPIRAEEGLLGVLCPPGSSTP 109
Query: 113 ----------------EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
+ +E + + +D+EGRCV + F+L VY P + + +
Sbjct: 110 YRDLSPNCHIGGYPTDDQIEQAGRVDPAALDAEGRCVAVEFPAFVLLGVYSPA--NSNGM 167
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------- 209
R F+ FF L R L +G+R+ + GDLN++ + ID +A + K
Sbjct: 168 RDDFRHAFFSCLDARIRNLTKEGKRVILCGDLNVSRSEIDTANAEDNMRKEGITHEEYIS 227
Query: 210 ---RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNY 253
R F ML GG +D R HP R+ +T W A N+
Sbjct: 228 VGNRRIFNQML--EGGDVVPPRDSGREVPVLWDTCREFHPNRKGMFTHWEQKINARPGNF 285
Query: 254 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 313
G+RID +LC+ I K W + L G
Sbjct: 286 GSRIDFVLCS--------------------------ISMKEWVES------ADIQEGLMG 313
Query: 314 SDHAPVYMCLGE 325
SDH PVY L E
Sbjct: 314 SDHCPVYAILKE 325
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 516 NKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIP 575
N P D +V ++ +S+ D F+D V+ W ++ + S P
Sbjct: 584 NNPPNADDPIAVADITPADST--DLDTSTPASPPFIDP---IVSKESWDKL--FTKPSPP 636
Query: 576 LCKGHKEPCVARVVKKPGPTFGRRFFVCAR 605
C+ H EPC+ KKPG GR F++C R
Sbjct: 637 RCEDHNEPCITLTTKKPGVNCGRAFWICPR 666
>gi|116193731|ref|XP_001222678.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
gi|88182496|gb|EAQ89964.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
Length = 646
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 143/304 (47%), Gaps = 57/304 (18%)
Query: 1 MKIVTYN----VNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
++I T+N V R R ++ SL+ + D+ +ADI+ QETK++R++L+ D+V+ G++
Sbjct: 3 LRITTWNGITAVTLPRAR-TKLTSLQAMFDTLEADIVVMQETKIQRKDLRDDMVLVPGWD 61
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL------------ 104
FFS K + GYSGVA + R + P+ AEEG TG L
Sbjct: 62 VFFSLP----KYKKGYSGVAIYTR-------SSKCCPIRAEEGITGTLCPPNSSTKFQHL 110
Query: 105 ----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ G L D+ + L DSEGRCVI + F+L VY P + D R +F
Sbjct: 111 PVDQQIGGYPTPGQLSDYVDEPTL--DSEGRCVILEFPAFVLIGVYSPA--TRDETRDEF 166
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--------- 211
+ + + + R L+ G+++F+ GDLNI + D K E +
Sbjct: 167 RQAYINAIDVRVRNLVAMGKQVFLCGDLNIIRSEQDTAGLAERLRKEEMTLDDFFSTPSR 226
Query: 212 WFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
F + +V G +D+ R HP R YTCW + A N+G+RID+
Sbjct: 227 CFLNHIVFGGHVAGEREEGREEPVLWDLCREFHPTRPGMYTCWDTRKNARPGNFGSRIDY 286
Query: 260 ILCA 263
+LC+
Sbjct: 287 VLCS 290
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 24/168 (14%)
Query: 464 LGQLSLKSFFHKRSNVSHD----DNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP 519
GQ SLK FF ++ +N+S+ T N S T + + P+ + +
Sbjct: 488 FGQSSLKGFFKPKTPTPDTTPTVENHSVVGTPTASNKSATARTSGERRGPDEPSSTAAL- 546
Query: 520 VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKG 579
D + E S D + K W ++ L + +P C+
Sbjct: 547 ENDTQNPIEESPKPQSFSPEKVFDPIEAKE------------SWSKL--LGKRVLPRCE- 591
Query: 580 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
H + C V KKPG GR FF+CAR GP+ + E C F W+
Sbjct: 592 HGDKCQTLVTKKPGVNCGRSFFMCARPLGPSGDKEQGTEFRCRTFIWS 639
>gi|385145207|emb|CCD57793.1| putative DNA lyase apn2 protein [Neurospora pannonica]
Length = 643
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 164/708 (23%), Positives = 266/708 (37%), Gaps = 191/708 (26%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ +ADI+ QETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDTLEADIVVMQETKIQRKDLRDDMVLVPGWDVYFSLP----KYKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
+ P+ AEEG TG+L S I D D+ + ++D
Sbjct: 54 ----SSKCCPIRAEEGITGVLCPPNSSIK--FRDLPADQQIGGYPTPGQFSSDIDEAQLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCVI + F+L VY P + D R +F+ F + R L+ G+ +F+ GD
Sbjct: 108 SEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVAMGKEVFLCGD 165
Query: 188 LNIAPAAIDRCDAG-PDFAKNEFRIW----------FRSMLVESG------------GSF 224
LNI +D AG P+ K E F + +V G
Sbjct: 166 LNIIRNEMDT--AGLPERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGRENPVL 223
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
+D+ R HP R YTCW + A N+G+RID++LC FV ++
Sbjct: 224 WDLCREFHPRRPGMYTCWETRKNARPGNFGSRIDYVLCTSGI--------KDWFVDANIQ 275
Query: 285 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VP--------- 327
E L GSDH PVY +G+ +P
Sbjct: 276 EG------------------------LLGSDHCPVYATIGDSVNKDGATIPITDIMNPEG 311
Query: 328 ---------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAES 378
E Q +++ +P +Q++ + KR K + ++ +
Sbjct: 312 MFKDGQRQREWSQKDCLPTSAKLIPEF-DRRQSIKDMFFKR---------KTTSTITKSA 361
Query: 379 NSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHST 438
D +D S+ + S + LQ S+ + + S ST
Sbjct: 362 APAADGQDTSDPTNISSATVNATAALQEAASSAPSPKQS----------------LSQST 405
Query: 439 ITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSV 498
T+ + + SP RA + A + + +K+ K+ + S +
Sbjct: 406 TTEPALSQTSPVPKRRAEQPASSIRPSK-KVKAALTKQPSSKTGPGPSQSTLMGFFKPKT 464
Query: 499 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 558
+L+ EE P S + +N P T + S Q ++ + +E ++
Sbjct: 465 PTPTLNPEERPASTNGNNHSPAT----IAETITRAEPSPAKGSQPKRPFQTDDIEEWDDD 520
Query: 559 ALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPG--------------------PT-- 595
A E W ++ L + +P C+ H E C + V KKPG P+
Sbjct: 521 ANKESWSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGMLLLLFFSFLLSDALRPSPP 577
Query: 596 ----------------FGRRFFVCARAEGPASNPEAN----CGYFKWA 623
GR F++CAR GP+ + E C F W+
Sbjct: 578 STTPDDLKLTLDSRLVTGRSFYMCARPLGPSGDKETGTEFRCKTFIWS 625
>gi|350645665|emb|CCD59640.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 518
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 181/427 (42%), Gaps = 79/427 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I ++N+NGLR S L+ +LDS +DIIC QETK ++ + AD Y +FS
Sbjct: 4 VRICSWNINGLR---SIQHPLKSILDSLTSDIICIQETKTT-PDISREFAFADNYNGYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEV---ALPVAAEEGFTGLLETSGSKIMEGLED 117
+TGYSG A FCR +P T+ + E G ++ +
Sbjct: 60 ----HSIHKTGYSGTAVFCR--NPLKPTKTFHSLNDILVESISCQNNSIDGWGFLKRKLN 113
Query: 118 FSKDELLKIDSEGRCVITDHGH--------------FILFNVYGPRADSEDTVRIQFKLQ 163
S E +D+EGR + I+ ++Y PR + E+ R+ +K
Sbjct: 114 ISHTEARNLDAEGRVLGLQFSTDIFTTFRTPDEIRPLIVLSIYFPRLNPENVERLNYKHL 173
Query: 164 FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC---DAGPDFAKNEFRIWFRSMLV-- 218
F +Q E LL + + + GD NI ID C + D N FR WF +L+
Sbjct: 174 FQSAVQLCIESLLIENN-VVIAGDFNICHKMIDHCAPDELMMDKFSNSFRQWFDQLLIGE 232
Query: 219 ---------ESGG--SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
S G F D+FR HP R+ A+TCW S T A Q NYG R+D+IL
Sbjct: 233 QQDVSLDNQSSVGLRRFVDIFRLLHPHRKNAFTCWSSRTNARQTNYGVRLDYIL------ 286
Query: 268 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 327
D++ +T +++ +I D + + + GSDH P+Y L
Sbjct: 287 ---FDMKLVEIITT-ISDNNIQAD---------------LMSHINGSDHCPIYADLPYFY 327
Query: 328 E---IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDT 384
I +S P S Y P + Q L S +M + +K K S++T +
Sbjct: 328 NSDLIFSYSFPPKCSHYWPQCQKKQMDLESFVMSKSHSKVTKQA-------FTSHNTTTS 380
Query: 385 EDCSENV 391
C NV
Sbjct: 381 VSCVRNV 387
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 463 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 522
Q Q+ L+SF +S+ + +T + +N+ T S V H +
Sbjct: 349 QKKQMDLESFVMSKSH------SKVTKQAFTSHNTTTSVSC----VRNVHSKEKRPAFRQ 398
Query: 523 YSCSVHELHGVNSSVCSHDQD-------EKKGKRFLDKERNNVALLEWRRIQQLMETSIP 575
+ E + +S C +DQ E ++ D + + WR + + P
Sbjct: 399 TKITFREYIPIETSTCIYDQSSSIENTTETLQRKIYDPSKTAQSTEAWRSLFSGPKKP-P 457
Query: 576 LCKGHKEPCVARVVKK----PGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
+C GHKEPCV R VKK G GRRF+VCAR +G + N A C F W
Sbjct: 458 VCLGHKEPCVMRTVKKLKTTKGSRLGRRFWVCARPQGASDNQAARCSTFFW 508
>gi|429862835|gb|ELA37442.1| DNA lyase [Colletotrichum gloeosporioides Nara gc5]
Length = 605
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 156/355 (43%), Gaps = 78/355 (21%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++IVT+NVNG+R Q + + + + D +ADI+ QE K++R++L ++V+ G+
Sbjct: 3 LRIVTWNVNGIRNPFGYQPWREKRTYQAMFDILEADIVIMQECKIQRKDLTDEMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ FFS K + GYSGVA + R P+ AEEG G+L GS I
Sbjct: 63 DVFFSLP----KHKKGYSGVAIYTR-------NATCAPIRAEEGILGVLTPPGSSI--PY 109
Query: 116 EDFSKDELLKIDSE-GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
D D+ + + RCV+ + F+L Y P + D+ R F+L + + L R
Sbjct: 110 RDLPPDQHIGGPAGCRRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDVRVRN 167
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESGGS- 223
L+ QG+ + + GDLN+ +D C+ K + W F ++V GG+
Sbjct: 168 LVAQGKEVILTGDLNVILEELDTCNLREMLRKEGMTVEDWKGMPSRRIFNQLVV--GGNV 225
Query: 224 ------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 271
D+ R HP+R+ +TCW + N G+RID++LC+
Sbjct: 226 TGARDEGREEPVLHDLTRIFHPDRQGMFTCWDTKRNTRPANNGSRIDYVLCSSGI----- 280
Query: 272 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
F ++ E L GSDH PVY +G+V
Sbjct: 281 ---KDWFTDSNIQEG------------------------LMGSDHCPVYAIIGDV 308
>gi|302505072|ref|XP_003014757.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
gi|291178063|gb|EFE33854.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
Length = 601
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 161/346 (46%), Gaps = 81/346 (23%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R G+ F + +
Sbjct: 1 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLPRQK-------KGIYVFSKCAA 53
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
+ AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 54 ----------IRAEEGVTGALCPPSSRTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 103
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ R L+ G+R+ + GD
Sbjct: 104 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 161
Query: 188 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVESGGS------------F 224
LN ID A K E+ RI+ R LV GS
Sbjct: 162 LNTCAGPIDSAPALERIRKGTETEEEYLSYPARRIFNR--LVRPVGSTGDTHDTETLPVL 219
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
D+ R HP R YTCW A NYG+RID+ILC+ +++S FV ++
Sbjct: 220 RDLCREFHPSRTGMYTCWNQKVNARPGNYGSRIDYILCS-------DNIRSW-FVESNIQ 271
Query: 285 ECDIL-----IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
E I+ + Y+ +K + + +GSDH PVY + +
Sbjct: 272 EGLIVCVKLELIYR--------SFKNLLISNEQGSDHCPVYASISD 309
>gi|302919090|ref|XP_003052788.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
gi|256733728|gb|EEU47075.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
Length = 653
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 138/301 (45%), Gaps = 55/301 (18%)
Query: 5 TYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
T+ VNG+R Q + + + + D +ADI+ QETK++R++L ++V+ G++ FF
Sbjct: 23 TFTVNGIRNPFGYQPWREKRTFQAMFDILEADIVVMQETKIQRKDLHDEMVLVPGWDVFF 82
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + K GYSGVA + R P+ AEEG TG+L + K D
Sbjct: 83 SLPK--HKKVQGYSGVAIYTR-------NSKCAPIRAEEGVTGIL--TPPKSTTKFRDLP 131
Query: 120 KDELL----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ 163
D+ + +DSEGRCVI + F+LF VY P + D R F+
Sbjct: 132 PDQQIGGYPRPGQLDGIIDEATLDSEGRCVILEFPGFVLFGVYSPA--NRDETRDDFRSG 189
Query: 164 FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------F 213
FF L R L+ G+++ + GDLN+ +A+D + K + + W F
Sbjct: 190 FFQALDVRIRNLVADGKQVILTGDLNVVRSAMDSTNVAEMLRKEDISLDDWLNMPVRRIF 249
Query: 214 RSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 262
++ E +D+ R HPER TCW + N G+RID+ILC
Sbjct: 250 NQLIFEGKVVGERDEGREEPVLWDLCRCFHPERAGMNTCWDTKRNTRPANNGSRIDYILC 309
Query: 263 A 263
+
Sbjct: 310 S 310
>gi|332860859|ref|XP_003317535.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pan
troglodytes]
Length = 466
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 163/381 (42%), Gaps = 108/381 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG TGL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLTGLFATQNG- 108
Query: 111 IMEGLEDFSKDELLKIDSEGRCVITDH--GHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
D +L + +G + ++H G +L +V
Sbjct: 109 -CHSATHMPTDRVL--NHQG--LYSEHLSGSALLIHV----------------------- 140
Query: 169 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG----- 221
++GDLN A ID DA F ++ R W S+L G
Sbjct: 141 --------------IILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSAS 186
Query: 222 --GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279
G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 187 HVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL------------------ 228
Query: 280 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 339
+ ++ID + + + GSDH PV L V +P P L +
Sbjct: 229 ----GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPPLCT 274
Query: 340 RYLPIIRGVQQTLVSVLMKRE 360
R+LP G Q ++ L+ E
Sbjct: 275 RFLPEFAGTQLKILRFLVPLE 295
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 415 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 463
>gi|255945069|ref|XP_002563302.1| Pc20g07790 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588037|emb|CAP86108.1| Pc20g07790 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 655
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 157/389 (40%), Gaps = 112/389 (28%)
Query: 2 KIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R S + + D+ +ADI+ QETK++R++L+ D+V+ G++
Sbjct: 4 RITTWNVNGIRNPFSYEPWRGTRTFESMFDTLEADIVILQETKIQRKDLRDDMVLVPGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-----ETSGSKI 111
+FS R + GYSGV + R P+ AEEG TG+L TS +
Sbjct: 64 CYFSLPRV----KKGYSGVVIYTR-------NATCSPIRAEEGITGVLCPPKSPTSFRSL 112
Query: 112 MEGLEDF---SKDELLK-----------------------------IDSEGRCVITDHGH 139
E + + D+L + +DSEGRCVI +
Sbjct: 113 PEEQQIGGYPTSDQLYRPAMNPEGPDPEEEQDDVGSVPDATIDAPTLDSEGRCVILEFPA 172
Query: 140 FILFNVYGP--RADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDR 197
F+L VY P R +S DT F++ F + L R L G+ + V GD+NI+ ID
Sbjct: 173 FVLIGVYCPAYRDESRDT----FRMDFLNALDARIRNLTAMGKNVVVAGDINISKQGIDA 228
Query: 198 C----------DAGPDFAKNEFRIWFRSMLVES-----------GGSFFDVFRSKHPERR 236
+F R F ++ + D+ RS HP R
Sbjct: 229 AHGIEAIRKGTTTEEEFISAPPRRLFNHLMSDGVVIGERDKGREDPVLLDLCRSFHPHRT 288
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
YTCW A NYG+RID++LC+ LH + N
Sbjct: 289 GMYTCWDQKLNARPGNYGSRIDYVLCS---LHMQDWFSDSN------------------- 326
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
+ L GSDH PVY + E
Sbjct: 327 ----------IQEGLMGSDHCPVYAVIKE 345
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 558 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 616
V+ +W +I + +P C+GH+EPC++ KKPG GR F++C R GP+ E
Sbjct: 577 VSKEDWSKI--FTKKPVPTCEGHQEPCISLTTKKPGMNRGRSFWICPRPLGPSGEKEKGT 634
Query: 617 ---CGYFKWA 623
C F WA
Sbjct: 635 QWRCPTFIWA 644
>gi|308803490|ref|XP_003079058.1| APEX nuclease (ISS) [Ostreococcus tauri]
gi|116057512|emb|CAL51939.1| APEX nuclease (ISS) [Ostreococcus tauri]
Length = 524
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 134/269 (49%), Gaps = 29/269 (10%)
Query: 7 NVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSD 66
+ +G + V + G+LR L D + C QETK+ R + + AD ++ S D
Sbjct: 69 DAHGQTRSVPRRGTLRAL--GADVRVACVQETKMSRLDFERRGREAD-WDCAHSACDARD 125
Query: 67 KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL------EDFSK 120
K R+GYSGVA + R + PVA EEG G + S I ED+++
Sbjct: 126 K-RSGYSGVAIYWRSRE-------TCPVAIEEGVCGTRTKAESAIWPNERPPLVDEDYAR 177
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPR----ADSEDTVRIQFKLQFFHVLQKRWEFLL 176
+ L D EGR + D G F+L N+Y P D + RI FK F L++R L
Sbjct: 178 AKAL--DDEGRAIWADFGEFVLCNLYAPTTYGAVDEKVAERIDFKRDFLRALEERLTSLR 235
Query: 177 CQGRRIFVVGDLNIAP-AAIDRCDAGPDFA--KNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+GRR+ + GD NIAP +DR P KNE R W +L + G DVFR HP
Sbjct: 236 SRGRRVIMCGDWNIAPNWKLDRAHDDPRAVEPKNESREWLTRVLGQDG--MCDVFREVHP 293
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILC 262
+ A+TCW +GA+ +YG+RID+ LC
Sbjct: 294 NVK-AFTCWNVASGAQINDYGSRIDYFLC 321
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 569 LMETSIPLCKGHKEPCVARVVKK-PGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
L + + P C GH E C RVVKK P F R FF C R GP +NP +CG+F W
Sbjct: 463 LAKMAPPKCAGHGETCKVRVVKKRESPHFARVFFCCPRPAGPRTNPACDCGFFAW 517
>gi|165874703|gb|ABY68234.1| DNA lyase [Beauveria bassiana]
Length = 576
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 147/342 (42%), Gaps = 82/342 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + G K + G ++ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGILCPPKSNTPYRDLPGDKQIGGYPTLNQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQAIL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 223
GDLNI + +D + G K + W +L E
Sbjct: 167 AGDLNIIRSEMDSSNIGESLRKEGISMDEWQSMPTRRILNQLLFEGTVVGDRDDDRGRAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 605
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 537 WSKL--LGKRVVPRCE-HDEPCISFVTKKPGVNCGRSFYICPR 576
>gi|46129427|ref|XP_389065.1| hypothetical protein FG08889.1 [Gibberella zeae PH-1]
Length = 609
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 152/628 (24%), Positives = 238/628 (37%), Gaps = 123/628 (19%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QETK+++++L ++V+ G++ FFS K + GYSGVA + R
Sbjct: 32 MFDILEADIVVMQETKIQQKDLLDEMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 84
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L S D +D+ + +D
Sbjct: 85 ----NSTCAPIRAEEGITGILTPPKSTTR--YRDLPEDQQIGGYPRPGQLDGIIDEATLD 138
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCVI + F+L VY P + D R F+L F L R L+ G+++ + GD
Sbjct: 139 SEGRCVILEFPGFVLLGVYSPA--NRDETRDDFRLGFLQALDVRIRNLVAAGKQVVLTGD 196
Query: 188 LNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVES-----------GGSFFD 226
LNI + +D + K F + W F ++ E +D
Sbjct: 197 LNIVRSEVDSTNVSETLRKGNFDLNEWMNIPARRIFNQLIFEGSVLGERDQGRKAPVLWD 256
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+ R HPER TCW + N G+RID++LC+ D F ++ E
Sbjct: 257 LCRCFHPERAGMNTCWDTKRNTRPANNGSRIDYVLCS--------DGIKSWFNFSNIQEG 308
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY-------MCLGEVPEIPQHSTPSL-- 337
L GSDH PV+ + GE +P+ P
Sbjct: 309 ------------------------LMGSDHCPVFAIFSDKVIVRGEERALPEMMNPPGMF 344
Query: 338 ----------ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC 387
A LP+ + + +R + S + P E + G
Sbjct: 345 HGERRLRDWNAKDLLPL---SAKLIPEFDRRRSIRDMFTKKAASAAPPQEPANPGAATKS 401
Query: 388 SENVDRSLNNYCD-SGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNH 446
S N D + + SG G S+ + GE + + N ++T +S
Sbjct: 402 SMNGDSNSEGIKEKSGGASGPETSAISIPKLGETLGSTKQSVSPLNAKRPGSVTDTTSRP 461
Query: 447 ISPFHVDRARKKAK-KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 505
+ K K K GQ +L+ FF ++ + D S V S T + +
Sbjct: 462 LKKTKSLVGAKDLKSKVAPGQRTLQGFFKPKAPAAQDGK------SERVAASSTPSPTKK 515
Query: 506 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRR 565
V S + P T + + E + S ++ D G+ F E A W +
Sbjct: 516 PTVATRGAASPQQPNTPEAM-LTERSPLRISQRRNEPDS-SGRVFDPIE----AKESWSK 569
Query: 566 IQQLMETSIPLCKGHKEPCVARVVKKPG 593
+ L + P C+ H EPC++ KKPG
Sbjct: 570 L--LGKRVAPRCE-HDEPCISLTTKKPG 594
>gi|320592520|gb|EFX04950.1| DNA lyase [Grosmannia clavigera kw1407]
Length = 795
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 149/369 (40%), Gaps = 93/369 (25%)
Query: 4 VTYNVNGLRQRV-----SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
VT+NVNG+R + +L+ + D DADI+CFQE K + L DLV G++SF
Sbjct: 12 VTWNVNGIRNPFKYAPWNNDKTLQAMFDRLDADIVCFQEVKTPKPSLTDDLVFIPGWDSF 71
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM------ 112
+S + +TGYSGV+ + R +P EEG TG+L G+
Sbjct: 72 YSFPHS----QTGYSGVSVYTR-------DSCCVPTRVEEGVTGVLRAPGTTTRYIDRPA 120
Query: 113 -EGLEDFSKDELLK--------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ 163
+ + + L+ ID+EGRC++ D F+L NVY P ++D R F+
Sbjct: 121 DRQIGGYPTERQLQSAAVARDLIDAEGRCLVLDFPLFVLINVYCPARRNDD--RTDFRDA 178
Query: 164 FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA---------GPDFAKNEFRIWFR 214
F L R L+ GR + + GD+N +D A +E + R
Sbjct: 179 FLLALDARVRNLVAAGRHVVLCGDMNTMRHHLDTAAVWGHHGQVLPAEALAFDEDYLSLR 238
Query: 215 SMLV--------------------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
S + S D R HP+RR YTCW + N+G
Sbjct: 239 SAAIFGRLLFDGDRITNTTTDIPPSSPPILHDACRELHPQRRGMYTCWDTRKNHRPANFG 298
Query: 255 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314
+RID +LC S + V + DI +L GS
Sbjct: 299 SRIDFVLC------------SPRLMQLLVIQADI-------------------QPQLLGS 327
Query: 315 DHAPVYMCL 323
DH PVY+ L
Sbjct: 328 DHCPVYVVL 336
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 554 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 613
E N+ A+ W + L + P+C+ H EPC V +KPG GR F++CAR GP
Sbjct: 713 EINDGAMAGWSALG-LGQRQSPMCE-HGEPCKIFVTRKPGVNSGRSFYMCARPPGPLGRR 770
Query: 614 EA----NCGYFKW 622
E C F W
Sbjct: 771 EKGTAWQCTTFFW 783
>gi|337734384|gb|AEI72618.1| DNA lyase [Epichloe festucae]
Length = 642
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 138/305 (45%), Gaps = 57/305 (18%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+I T+NVNG+R Q + + + + D ++DI+ QETK++R++L+ D+V+ G+
Sbjct: 4 FRITTWNVNGIRNPFGYQPWREQRTFQSMFDILESDIVVMQETKIQRKDLQDDMVLVPGW 63
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ FFS K + GYSGVA + R P+ AEEG TG+L +
Sbjct: 64 DVFFSLP----KYKKGYSGVAIYTR-------NATCAPLRAEEGVTGVL--CAPRSTTSF 110
Query: 116 EDFSKDELLK----------------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
D D+ + +DSEGRCVI + F+L VY P + D R
Sbjct: 111 RDLPPDQQIGGYPRPGQLSGAVEEAVLDSEGRCVILEFPAFVLLGVYSPA--NRDESRDV 168
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W----- 212
F+ FF L R L+ G+ + + GDLN+ + +D + K + + W
Sbjct: 169 FRTSFFEALDVRIRNLVSMGKEVILTGDLNVIRSEMDSTNVLETLRKEDMTLEEWVSLPT 228
Query: 213 ---FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 258
F ++ E +D+ R+ HP R TCW + N G+RID
Sbjct: 229 RRIFNQLIFEGSIVGERDEERQEPVLWDLCRNFHPTRLGMNTCWDTKRNTRPANNGSRID 288
Query: 259 HILCA 263
+ILC+
Sbjct: 289 YILCS 293
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 618
W ++ L + +P C+ H+EPC++ V KKPG GR F++C R GP+ E CG
Sbjct: 572 WSKL--LGKRVVPRCE-HEEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKEKGSEWRCG 628
Query: 619 YFKWA 623
F W+
Sbjct: 629 TFIWS 633
>gi|402084596|gb|EJT79614.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 550
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 160/368 (43%), Gaps = 89/368 (24%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I ++NVNG+R Q + + + + DS +ADI+ QETK++ ++L+ D+V+ G+
Sbjct: 4 LRITSWNVNGIRNPFAYQPWRENKTYQAMFDSLEADIVIMQETKIQPKDLQDDMVLVPGW 63
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIME 113
+ +FS K + GYSGVA + R T P+ AEEG TG+L S ++ +
Sbjct: 64 DVYFSLP----KFKKGYSGVAIYTR-------TSKCCPIRAEEGITGVLCPPNSATRFRD 112
Query: 114 GLED-----------FSKD-ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
D ++D + +DSEGRC+I + F+L VY P A D R F+
Sbjct: 113 LPADCQIGGYPRPGQLTRDVDEATLDSEGRCMILEFPAFVLIGVYSPAA--RDETRTDFR 170
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD----------AGPDFAKNEFRI 211
L F + R L+ G+ + + GDLNI +D + DF +
Sbjct: 171 LGFQEAMDVRVRNLVAMGKHVVLTGDLNIIRGELDTAGLVDWLRKANMSLDDFLSTPSQR 230
Query: 212 WFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 258
++ GG D+ R HP R+ YTCW + A N+G+RID
Sbjct: 231 LLNHLVF--GGVVIGKRDHGRETPVMCDLGREFHPIRQGMYTCWETRRNARPSNFGSRID 288
Query: 259 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 318
++LC S + V+ G+ L GSDH P
Sbjct: 289 YVLC------------SAGIRSWFVD--------------------AGIQEGLLGSDHCP 316
Query: 319 VYMCLGEV 326
VY L ++
Sbjct: 317 VYATLSDI 324
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 618
W +I L + P C+ H EPC + V KKPG GR F++CAR GP+ E + CG
Sbjct: 482 WSKI--LGKRVAPNCE-HGEPCTSLVTKKPGINCGRSFYMCARPLGPSGEKEKDTEWRCG 538
Query: 619 YFKWAFSKSKQK 630
F W+ K K
Sbjct: 539 TFIWSSDWGKSK 550
>gi|62085846|gb|AAX63314.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 148/342 (43%), Gaps = 82/342 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|171676121|ref|XP_001903014.1| hypothetical protein [Podospora anserina S mat+]
gi|170936126|emb|CAP60786.1| unnamed protein product [Podospora anserina S mat+]
Length = 645
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 148/344 (43%), Gaps = 84/344 (24%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
S+R + D+ +ADI+ QE K++R++L+ D+V+ G++ +FS K + GYSGVA +
Sbjct: 28 SIRAMFDTLEADIVVVQEAKIQRKDLQDDMVLIPGWDVYFSLP----KHKKGYSGVAIYT 83
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL--------------- 124
R S++ A P+ AEEG TG+L S D +D+ +
Sbjct: 84 R------SSKCA-PIRAEEGITGILCPPNSSTT--FRDLPEDQQIGGYPRPGQLSGEVDE 134
Query: 125 -KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIF 183
+DSEGRCVI + F+L VY P + D R +F+ F + R L+ G+ +
Sbjct: 135 ATLDSEGRCVILEFPAFVLVGVYSPA--TRDESRDEFRHAFTEAMDVRVRNLVAMGKEVV 192
Query: 184 VVGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------G 222
+ GDLNI + +D K E + F + +V G
Sbjct: 193 LTGDLNIIRSELDTAGLVEQLRKEEVSLDDFFSSPSRRFLNQIVFGGRVVGTRDEGREEA 252
Query: 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 282
+D+ R HP R YTCW + N+G+RID++LC+ F+ +
Sbjct: 253 VLWDLCREFHPTRTGMYTCWDTRKNCRPGNFGSRIDYVLCSSGI--------KDWFIDAN 304
Query: 283 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
+ E L GSDH PVY +G+
Sbjct: 305 IQEG------------------------LLGSDHCPVYATMGDT 324
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 466 QLSLKSFFHKRSNV-SHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 524
Q +LKSFF ++ V S + TD N ++ D S + E +P + P
Sbjct: 483 QGTLKSFFKPKTPVPSPSQEPTGTD---NTASATADISTASELLPAELPPEIQSPNQSLK 539
Query: 525 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 584
S E + + + D+K D N + W ++ L + +P C+ H E C
Sbjct: 540 GSA-ESSAKETPLTTVPTDDK----VFDPIENKAS---WSKL--LGKRVVPKCE-HGEDC 588
Query: 585 VARVVKKPGPTFGRRFFVCARAEGPASNPEAN-----CGYFKWA 623
V+R+ KKPG GR FF+CAR GP+ E C F W+
Sbjct: 589 VSRITKKPGVNCGRSFFMCARPTGPSGKKEDGTTEFCCKTFIWS 632
>gi|380487093|emb|CCF38266.1| DNA lyase [Colletotrichum higginsianum]
Length = 621
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 142/338 (42%), Gaps = 80/338 (23%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 13 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVFFSLP----KYKKGYSGVAIYTR--- 65
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + L +DSE
Sbjct: 66 ----NATCCPIRAEEGITGILTPPNSSTSFRELPEAQQIGGYPRPGQLPGEVDEATLDSE 121
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCVI + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 122 GRCVILEFPAFVLIGTYSPA--TRDSSRDSFRLGYLNALDARVRNLVAAGKQVILAGDLN 179
Query: 190 IAPAAIDRCDAGPDFAKNEFRI--WFRSM-------LVESG------------GSFFDVF 228
+ ID C+ K + W S LV G +D+
Sbjct: 180 VTRNEIDTCNVREALRKEGMSVEEWMGSPSRRLFNHLVFDGQVAGHRDEGRETPVLYDLT 239
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288
R HP R++ +TCW + N G+RID+ILC+ F ++ E
Sbjct: 240 RVFHPTRQDMFTCWDTKRNMRPANNGSRIDYILCSAGI--------KGWFTDSNIQEG-- 289
Query: 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
L GSDH PVY LG+
Sbjct: 290 ----------------------LMGSDHCPVYAVLGDT 305
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWAFSKSKQ 629
+P C+ H EPC+ KKPG GR F++C R G + E CG F W+ K+
Sbjct: 561 VPRCE-HGEPCIIFQTKKPGVNCGRSFYICPRPLGRSGEKEKGTEWRCGTFIWSSDWKKE 619
Query: 630 K 630
+
Sbjct: 620 Q 620
>gi|62085804|gb|AAX63293.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 148/342 (43%), Gaps = 82/342 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W-------FRSMLVESGGSF----------- 224
GDLNI + +D + K + W + L+ G F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMSEWQSMPTRRILNQLLFKGTVFGDRDDDRERAV 226
Query: 225 -FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085782|gb|AAX63282.1| DNA lyase [Beauveria bassiana]
gi|62085784|gb|AAX63283.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 147/342 (42%), Gaps = 82/342 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAVGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRGEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|350631687|gb|EHA20058.1| Hypothetical protein ASPNIDRAFT_48146 [Aspergillus niger ATCC 1015]
Length = 575
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 140/327 (42%), Gaps = 72/327 (22%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQETK++R++L+ D+V+ G++ +FS R + G SG+ C S
Sbjct: 1 MFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPRV----KKGLSGM--LCPPNS 54
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
S E LP + G G +E L D +DSEGRCVI + F+L
Sbjct: 55 SVSFRE--LPENQQIG--------GYPTIEQLSQLEVDAAT-LDSEGRCVILEFPAFVLL 103
Query: 144 NVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP- 202
+Y P + D R F+ F ++ R L+ G+R+FV GDLNI+ ID AG
Sbjct: 104 GIYSPA--NRDESRDSFRRSFIDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHAGEA 161
Query: 203 ---------DFAKNEFRIWFRSMLV--------ESGGS---FFDVFRSKHPERREAYTCW 242
+F R +L E G D+ RS HP R+ YTCW
Sbjct: 162 IRKGTLTEDEFVSTHARRVLNQLLSDGKVIGEREEGREQPVLHDICRSFHPGRKGMYTCW 221
Query: 243 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 302
A NYG+RID++LC+ D+Q F ++ E
Sbjct: 222 EQRINARPGNYGSRIDYVLCS-------LDMQEW-FCDSNIQEG---------------- 257
Query: 303 WKGGMSTRLEGSDHAPVYMCLGEVPEI 329
L GSDH PVY E I
Sbjct: 258 --------LMGSDHCPVYAMFKETVNI 276
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
PLC+GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 515 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 567
>gi|166208515|gb|ABY84902.1| DNA lyase [Beauveria sp. GN-2004a]
Length = 576
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 144/336 (42%), Gaps = 82/336 (24%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA + R
Sbjct: 5 MFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYTR--- 57
Query: 84 PFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELLKIDS 128
P+ AEEG G+L + G K + G ++ DE L +DS
Sbjct: 58 ----NATCAPIRAEEGILGILCPPKSNTLYRDLPGDKQIGGYPTLNQLRGNVDEAL-LDS 112
Query: 129 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDL 188
EGR V+ + F+LF VY P + D RI+F+ F L R L+ G+++ + GDL
Sbjct: 113 EGRYVVLEFPSFVLFRVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVILAGDL 170
Query: 189 NIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GSFFDV 227
NI + +D + G K + W +L E +D+
Sbjct: 171 NIIRSEMDSSNIGESLRKEGISMDEWQSMPTRRILNQLLFEGTVVGDRDDDRGRAVLWDI 230
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
R HP R +TCW + N G+RID+ILC+ D FV ++ E
Sbjct: 231 CRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNIQEG- 281
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
L GSDH PVY +
Sbjct: 282 -----------------------LMGSDHCPVYATM 294
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 605
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 537 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPR 576
>gi|62085780|gb|AAX63281.1| DNA lyase [Beauveria sp. ARSEF 32]
Length = 579
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 148/342 (43%), Gaps = 82/342 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W-------FRSMLVESGGSF----------- 224
GDLNI + +D + K + W + L+ G F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMSEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 225 -FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|302820744|ref|XP_002992038.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii]
gi|300140160|gb|EFJ06887.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii]
Length = 654
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 110/239 (46%), Gaps = 84/239 (35%)
Query: 43 QELKSDLVMADGYESFFSCTRTSDKGRTGY----------------------------SG 74
QEL +D+ A ESFFSCTRT KG GY SG
Sbjct: 319 QELTADIATAIS-ESFFSCTRTVKKGCLGYCFALLDWVETLRFRTFLHPWNRNKAHCWSG 377
Query: 75 VATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG--------------LEDFSK 120
VATFC+V+ VALPVAAEEGFTG L + ++ EG +E F++
Sbjct: 378 VATFCKVEC---GNNVALPVAAEEGFTGPL--TSARAGEGDKEFWLGSYDPVLTVEGFTR 432
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
ELL +D+EGRC++TDHGHF+LFN+YGP D R FKL+ VLQ
Sbjct: 433 QELLDLDNEGRCIVTDHGHFVLFNIYGPNVGCGDAERQDFKLK---VLQ----------- 478
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 239
N R W S+LV GG+F D FR HPER EAY
Sbjct: 479 ----------------------HVHFNMSRQWLTSLLVSEGGAFSDAFRVFHPERAEAY 515
>gi|453080166|gb|EMF08218.1| DNA lyase-like protein [Mycosphaerella populorum SO2202]
Length = 659
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 138/308 (44%), Gaps = 58/308 (18%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R S S + D +ADI+ QE K++R++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYPPWNTSRSYSSMFDVLEADIVVMQELKIQRKDLRDDMVLVDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI---- 111
+ +FS K + GYSGV + R P+ AEEG G+L +S + +
Sbjct: 61 DCYFSLP----KHKKGYSGVGIYTR-------NATCSPIRAEEGVLGVLPSSNAGVPYRE 109
Query: 112 ---------------MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
L S ++ +D+EGRCVI + F+L VY P + + +
Sbjct: 110 LPEEDAIGGYLNTEQYSHLWQLSGEDPAGLDAEGRCVILEFPAFVLLGVYSPA--NSNGM 167
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-- 209
R F+ F L R L+ G+ + +VGDLNI D + K EF
Sbjct: 168 RDGFRYGFLCALDCRIRNLIKSGKNVVLVGDLNITRHESDSASTLEEIRKKQATREEFLA 227
Query: 210 ---RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 255
R F +L++ +D R HP+R+ YT W + A NYG+
Sbjct: 228 GSNRRIFNQLLLDGEVLGERDEGRETAVLWDTTRGFHPDRKGMYTHWDTKINARPGNYGS 287
Query: 256 RIDHILCA 263
RID +L A
Sbjct: 288 RIDFVLVA 295
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCG 618
PLC+GH EPC + + KK G GR F++CAR GP + G
Sbjct: 581 PLCEGHSEPCKSMLTKKKGYNQGRSFWMCARPLGPTGEKDRTTG 624
>gi|239613861|gb|EEQ90848.1| DNA lyase Apn2 [Ajellomyces dermatitidis ER-3]
Length = 633
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 127/272 (46%), Gaps = 42/272 (15%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSD----KGRTGYSGV 75
S + D+ DADI+ FQETK+++++L+ D+V+ +G++ FFS + S + G +G+
Sbjct: 30 SFEAMFDALDADIVIFQETKIQKKDLQDDMVLVNGWDCFFSLPKNSKCCPIRAEEGITGI 89
Query: 76 ATFCRVKSPFSSTEV--ALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV 133
SPF S LP A+ G G E L S + +DSEGRC+
Sbjct: 90 LCLPASVSPFPSPTSFRDLPEEAQIG--------GYPTAEQLA-LSDVDASTLDSEGRCM 140
Query: 134 ITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPA 193
I + F+L VY P + D R F+ F ++L R L+ G+R+ V+GDLNI +
Sbjct: 141 ILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNILDARVRNLVAMGKRVIVMGDLNICGS 198
Query: 194 AIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS-------------FFDVFRS 230
ID A +F R F ++ GG D+ R
Sbjct: 199 EIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLVY--GGKVIGDRDQGRETPILVDLCRK 256
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILC 262
HP+R YTCW A NYG+RID++LC
Sbjct: 257 YHPDRPGMYTCWEQRVNARPGNYGSRIDYVLC 288
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 459 AKKSQLGQLSLKSFFHKRSN-----VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 513
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 459 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 508
Query: 514 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 564
N P + +SC + G + S++ D R D N + W
Sbjct: 509 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 565
Query: 565 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 620
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 566 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 623
Query: 621 KWA 623
W+
Sbjct: 624 IWS 626
>gi|62085810|gb|AAX63296.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 147/342 (42%), Gaps = 82/342 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFV 184
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R L+ +++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAASKQVVL 166
Query: 185 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 223
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 284 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 609
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|148675567|gb|EDL07514.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_b [Mus musculus]
Length = 402
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 115 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 165
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 1 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 60
Query: 166 HVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 221
+LQ R E LL G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 61 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 120
Query: 222 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 121 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 165
Query: 277 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 336
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 166 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVLN-VSCVPAKQCPA 208
Query: 337 LASRYLPIIRGVQQTLVSVLMKRE 360
L +R+LP G Q ++ L+ E
Sbjct: 209 LCTRFLPEFAGTQLKILRFLVPLE 232
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 348 SPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 399
>gi|86196713|gb|EAQ71351.1| hypothetical protein MGCH7_ch7g758 [Magnaporthe oryzae 70-15]
gi|440468556|gb|ELQ37712.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
Y34]
gi|440481166|gb|ELQ61780.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
P131]
Length = 626
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 143/337 (42%), Gaps = 80/337 (23%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QE K++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDILEADIVVIQEAKIQRKDLQDDMVLVPGWDVYFSLP----KFKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLEDFS------KDELLKI------DSE 129
+ P+ AEEG TG+L S +K E D D+L I DSE
Sbjct: 54 ----SSKCSPIRAEEGITGILCPPNSTTKFRELSPDQQIGGYPRPDQLSDIIDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRC+I + F+L VY P + D R F+ F + R L+ G+++ + GDLN
Sbjct: 110 GRCMILEFPAFVLIGVYSPA--TRDETRTDFRQAFHKAMDARVRNLVAMGKQVVLTGDLN 167
Query: 190 IAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------GSFFDVF 228
I +D K E I F + +V G +D+
Sbjct: 168 IIRNELDTAGILERLRKEEMTIDEFFSTPSRRFLNHMVFGGTVVGGRDEGREEPVMYDLG 227
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288
R HP+R YTCW + A N+G+RID++LC+ F+ ++ E
Sbjct: 228 REFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCSA--------GMKDWFIDANIQEG-- 277
Query: 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
L GSDH PVY L +
Sbjct: 278 ----------------------LLGSDHCPVYATLSD 292
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 428 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 487
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 424 KSSASNSRPQKKTKVSTSNTAKNSVDRA--------PGQKSLTGFFKPKNPISTPATDG- 474
Query: 488 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 547
TS+ S T S + + KIP S + G + + + G
Sbjct: 475 ERTSIRTTPSPTKCS---------NASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGG 525
Query: 548 KRF-LDKERNNVALLE--------------WRRIQQLMETSIPLCKGHKEPCVARVVKKP 592
+ F KE + A L W ++ L + +P C+ H EPC++ KKP
Sbjct: 526 RSFNSGKEDDTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKP 582
Query: 593 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
G GR F++C R GP+ E CG F W+
Sbjct: 583 GINCGRSFYICGRPLGPSGEKEKGTEWRCGTFIWS 617
>gi|330920551|ref|XP_003299056.1| hypothetical protein PTT_09967 [Pyrenophora teres f. teres 0-1]
gi|311327471|gb|EFQ92889.1| hypothetical protein PTT_09967 [Pyrenophora teres f. teres 0-1]
Length = 634
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 134/309 (43%), Gaps = 62/309 (20%)
Query: 1 MKIVTYNVNGLRQRV-----SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R S + + D +ADI+ QE K++R++L D+V+ G+
Sbjct: 2 VRITTWNVNGIRNPFGYKPWSTTRTFNAMFDILEADIVIMQELKIQRKDLTDDMVLVPGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ +FS K + GYSGV + R V P+ AEEG G L
Sbjct: 62 DCYFSLP----KHKKGYSGVGIYTR-------QSVCAPIRAEEGVLGALCPPNSSTPYRD 110
Query: 105 ---------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
S S+I D D L DSEGRC++ + F+LF VY P + +
Sbjct: 111 LPGSASIGGYLSASQIASLPPDLDADSL---DSEGRCLVLEFPAFVLFGVYSPA--NSNG 165
Query: 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG----------PDFA 205
R F+L F L+ R L G+ + + GDLN++ ID A ++
Sbjct: 166 QRDGFRLGFLTALETRIRNLTKMGKNVILTGDLNVSRDLIDTAKAEDNMRAEGMTHAEYL 225
Query: 206 KNEFRIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 254
R F +L+ +D+ R HP+R +T W A N+G
Sbjct: 226 STPNRRIFNQLLLNGNVPGERDQGREEPVLYDLCREFHPDREGMFTHWEQKINARPGNFG 285
Query: 255 TRIDHILCA 263
+RID ILC+
Sbjct: 286 SRIDFILCS 294
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
P C+ H EPC KK G FGR F+VC R GP+ E C F W
Sbjct: 577 PRCE-HGEPCTLYKTKKKGQNFGREFWVCPRPIGPSGVKETGTQWRCPTFTW 627
>gi|317032475|ref|XP_001394977.2| DNA lyase [Aspergillus niger CBS 513.88]
Length = 555
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 35/222 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R S + + D +ADI+ FQETK++R++L+ D+V+ G+
Sbjct: 3 LRITTWNVNGIRNPFSYEPWRGKRTFDAMFDILEADIVVFQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ +FS R + GYSGV + R P+ AEEG +G+L
Sbjct: 63 DCYFSLPRV----KKGYSGVVIYTR-------NATCAPIRAEEGLSGMLCPPNSSVSFRE 111
Query: 105 -----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
+ G +E L D +DSEGRCVI + F+L +Y P + D R
Sbjct: 112 LPENQQIGGYPTIEQLSQLEVDA-ATLDSEGRCVILEFPAFVLLGIYSPA--NRDESRDS 168
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG 201
F+ F ++ R L+ G+R+FV GDLNI+ ID AG
Sbjct: 169 FRRSFIDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHAG 210
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
PLC+GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 495 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 547
>gi|165874707|gb|ABY68236.1| DNA lyase [Beauveria caledonica]
Length = 559
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 141/334 (42%), Gaps = 82/334 (24%)
Query: 28 FDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSS 87
+ADI+ QETK++R++L+ D+V+ G++++FS + + GYSGVA + R
Sbjct: 1 LEADIVIMQETKIQRKDLQDDMVLVPGWDAYFSLPQQ----KKGYSGVAIYTR------- 49
Query: 88 TEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELLKIDSEGRC 132
P+ AEEG G+L + G + + G S+ D+ L +DSEG C
Sbjct: 50 NATCAPIRAEEGILGILCPPKSNTPYRDLPGDQQIGGYPTLSQLRGNVDDAL-LDSEGSC 108
Query: 133 VITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAP 192
V+ + F+L VY P + D RI+F+ F L R L+ G+++ V GDLNI
Sbjct: 109 VVLEFPSFVLLGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVIVAGDLNIIR 166
Query: 193 AAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GSFFDVFRSK 231
+D + K + W +L E +D+ R
Sbjct: 167 NEMDSSNIAESLQKEGISMDEWQSMPTRRILNQLLFEGTVVGDRDDDRERAVLWDICRCF 226
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
HP R +TCW + N G+RID+ILC+ D FV ++ E
Sbjct: 227 HPTRLGMHTCWDAKRKTRPANVGSRIDYILCS--------DGLKSWFVESNIQEG----- 273
Query: 292 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
L GSDH PVY + +
Sbjct: 274 -------------------LMGSDHCPVYATMSD 288
>gi|384498310|gb|EIE88801.1| hypothetical protein RO3G_13512 [Rhizopus delemar RA 99-880]
Length = 359
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 140/304 (46%), Gaps = 60/304 (19%)
Query: 49 LVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS- 107
+ + GY+++FS + K + GYSGV+ + + +E+ LP A+ EG TG+L+
Sbjct: 1 MALVPGYDAYFSFS----KAKLGYSGVSVYVK-------SEIGLPKASLEGITGILQNRP 49
Query: 108 -GSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+ ++ L+ + +D+EGRC+I + +L N+Y P SE R +F + ++
Sbjct: 50 FDADFLKTLQTPAD----ALDAEGRCIILEFECLVLINIYFPNFASE--ARGEFIMDYYG 103
Query: 167 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--------PDFAKNEFRIWFRSMLV 218
+QKR E L +G+++ +VGD+N ID CD DF R W L+
Sbjct: 104 CVQKRIEDYLAKGQQVVLVGDVNAVHDTIDHCDPKESMRQHGLKDFKDLPHRRWV-DRLI 162
Query: 219 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 278
GS D+ R HP+R+ +TCW + A NYGTRID++L + H LQ F
Sbjct: 163 GPQGSMIDMARYYHPDRKGMFTCWNTRINARPANYGTRIDYVLAS-------HGLQP-RF 214
Query: 279 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 338
V + ++ GSDH PVY PE + + P
Sbjct: 215 VYADIQ------------------------PQIIGSDHCPVYADFAIDPEQMRCAQPDTT 250
Query: 339 SRYL 342
S L
Sbjct: 251 SPLL 254
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 554 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 613
E + + W + Q E P C GH PC+ R V K G GR F+VC++ GP P
Sbjct: 288 EIKDKQVTAWSALFQAPER--PRCSGHDAPCLERTVTKKGKNLGRTFYVCSKPVGPQDGP 345
Query: 614 EAN--CGYFKW 622
+ + C +F W
Sbjct: 346 KEHYSCHHFSW 356
>gi|310794037|gb|EFQ29498.1| endonuclease/Exonuclease/phosphatase [Glomerella graminicola
M1.001]
Length = 635
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 155/372 (41%), Gaps = 86/372 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I T+N L Q+ S + + +ADI+ QETK++R++L+ D+V+ G++ FFS
Sbjct: 3 LRITTWNGEWL-----QYTS-EAMFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFS 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-------ME 113
K + GYSGVA + R P+ AEEG TG+L S +
Sbjct: 57 LP----KHKKGYSGVAIYTR-------NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQ 105
Query: 114 GLEDFSKDELLK-------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+ + + + L +DSEGRCV+ + F+L Y P D+ R F+L + +
Sbjct: 106 QIGGYPRPDQLPGEVDEATLDSEGRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLN 163
Query: 167 VLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSM 216
L R L+ G+++ + GDLN+ +D C+ K + W F +
Sbjct: 164 ALDARVRNLVAAGKQVVLTGDLNVIREEMDTCNVREALRKEGMSVEEWMGMPSRRLFNHL 223
Query: 217 LVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+ + +D+ R HP R +TCW + N G+RID+ILC+
Sbjct: 224 VFDGRVTGERDEGREAPVLYDLTRIFHPTRLGMFTCWETKRNMRPANNGSRIDYILCSA- 282
Query: 266 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
K W G+ + L GSDH PVY L +
Sbjct: 283 -------------------------GIKDWFTGS------DIQEGLMGSDHCPVYANLAD 311
Query: 326 VPEIPQHSTPSL 337
++ T L
Sbjct: 312 TVKVDGRDTSVL 323
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
+P C+ H EPC+ KKPG GR F++CAR G + E CG F W+
Sbjct: 575 VPRCE-HGEPCIILQTKKPGVNCGRSFYICARPLGQSGQKEKGTEWRCGTFIWS 627
>gi|226294616|gb|EEH50036.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb18]
Length = 621
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 134/302 (44%), Gaps = 75/302 (24%)
Query: 12 RQRVSQFG----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDK 67
R R++ G S + D+ +ADI+ FQE K+++++L+ D+V+ +G++
Sbjct: 17 RSRITHGGRSGRSKYAMFDALEADIVIFQEAKVQKKDLQDDMVLVNGWD----------- 65
Query: 68 GRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK------IMEGLEDFSKD 121
YSGV + R P+ AEEG TG+L GS + D ++
Sbjct: 66 ---WYSGVVIYTR-------NSKCCPIRAEEGITGILCPPGSSSTSPFPALTSFRDMPEE 115
Query: 122 ELL-----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
+ + +DSEGRCVI + F+L VY P + D +R F+ F
Sbjct: 116 QQIGGYPTPEQLALSNIDAATLDSEGRCVILEFPAFVLLGVYCPA--NRDEMRDGFRKAF 173
Query: 165 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFR 214
+ + R L+ G+R+ + GDLNI+ + ID A +F R F
Sbjct: 174 VNAVDARVRNLVGMGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPVRRIFN 233
Query: 215 SMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
++ SGG D+ R HP+RR YTCW A NYG+RID++L
Sbjct: 234 QLV--SGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSRIDYVL 291
Query: 262 CA 263
C+
Sbjct: 292 CS 293
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 465 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPV-TDY 523
GQ SLK FF + + S D+ + S V++ V V + K P+ Y
Sbjct: 456 GQKSLKGFFGLKGSGSTADDQT---NSPKVSDPVA--------VGNEQQEAAKSPLDITY 504
Query: 524 SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL--------EWRRIQQLMETSIP 575
SC + G Q E + N+ ++ W RI + P
Sbjct: 505 SCPPGDGCGPEDDETQGQQQEAAEPLANGGDSNDDCIVHDPIANKESWSRI--FTKKPAP 562
Query: 576 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 623
C GH EPC++ V KK G GR F++CAR GP+ + + C F W+
Sbjct: 563 RCSGHHEPCISLVTKKAGINCGRSFWICARPLGPSGVKKTGDQWRCDTFIWS 614
>gi|353237115|emb|CCA69095.1| related to APN2-AP endonuclease, exonuclease III homolog
[Piriformospora indica DSM 11827]
Length = 715
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 137/310 (44%), Gaps = 70/310 (22%)
Query: 37 ETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAA 96
E K ++ L + + Y+ +FS + GYSGVA + +++ + A
Sbjct: 5 ELKTAKRALDASTAVPGKYDGYFSLA-----SKAGYSGVAVY-------TNSHKVRALKA 52
Query: 97 EEGFTGLLE-----------------TSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGH 139
EEG +G ++ S +M + LL++D EGR ++ D G
Sbjct: 53 EEGLSGGVQPKPPLTPQERVSQTYPAVSRINLMANDDGSIPSSLLELDKEGRALVLDFGM 112
Query: 140 FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ-GRRIFVVGDLNIAPAAIDRC 198
F+L NVY ADS D VR +K+ F+++LQ+R L+ + GR + V+GDLN A ID
Sbjct: 113 FVLINVYC-VADSAD-VRYHYKMNFYYLLQERVRILIEEEGREVIVLGDLNSTAAPIDHV 170
Query: 199 DAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNY 253
+AG ++ F R W R + G D+ R + P R YTCW + A + NY
Sbjct: 171 EAGLPKYRDVFYEPLHRSWLRDW-ISPVGPLVDIVRERFPTREGMYTCWNTKINAREGNY 229
Query: 254 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 313
GTRID IL P L Q V E DI ++G
Sbjct: 230 GTRIDLILIT-PGLRQ------------WVKEADI-------------------QPSIKG 257
Query: 314 SDHAPVYMCL 323
SDH PV++ L
Sbjct: 258 SDHCPVFIDL 267
>gi|384246641|gb|EIE20130.1| DNase I-like protein [Coccomyxa subellipsoidea C-169]
Length = 283
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 120/267 (44%), Gaps = 74/267 (27%)
Query: 1 MKIVTYNVNGLRQRVSQF--GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
M+IVT+N+NGLR + + G L LL +ADII
Sbjct: 1 MRIVTWNINGLRACLKRRFDGKLINLLQFLEADII------------------------- 35
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
C ++ + E +A +G+ F
Sbjct: 36 --------------------CFQETKLARQEATEDLALADGWDSFFA------------F 63
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFFHVLQKRWEFLL 176
S++EL ++DSEGR V+TDHG F+L NVYGP +E++ R FKL+F+ L R + L
Sbjct: 64 SQEELERLDSEGRVVMTDHGAFVLVNVYGPAISTEESAEERYAFKLRFYEGLLHRIQTLR 123
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234
GR + ++GDLNI+ A ID CD GP F R +L +GG F D
Sbjct: 124 ASGRCVILLGDLNISLAPIDSCDPGPIDAFTSRTDRRLLTRLLTSNGGPFLD-------- 175
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHIL 261
AYTCW + +GA NYGTRID IL
Sbjct: 176 ---AYTCWSTASGARINNYGTRIDLIL 199
>gi|326368806|gb|ADZ55472.1| DNA lyase [Sclerotinia homoeocarpa]
Length = 654
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 138/341 (40%), Gaps = 103/341 (30%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D + DII QE K++R++L+ D+V+ G++ +FS +
Sbjct: 54 MFDILETDIIVMQEAKIQRKDLRDDMVLVPGWDVYFSLPK-------------------- 93
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
+V P+ AEEG TG+L + G L D+ D +D
Sbjct: 94 ---HKKVCAPIRAEEGITGVLTPPNSTTSFRDLPENEQIGGYPTGAQLSDYFLDAAT-LD 149
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCVI + F+L VY P + D R +F+L F + L R L+ +G+R+F+ GD
Sbjct: 150 SEGRCVILEFPAFVLIGVYCPA--NRDESRDEFRLGFLNALDTRVRNLVAEGKRVFLAGD 207
Query: 188 LNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVESGGS-------------F 224
LNI ID +A K R F ++V GG
Sbjct: 208 LNIIRDEIDTANAEEQLKKQGITVEQYVSTPARRLFNHLVV--GGRVVGERDEGRETEIM 265
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
+D+ R HPER+ +TCW + N+G+RID++LC+
Sbjct: 266 WDLCRGFHPERKGMFTCWDTKLNTRPGNFGSRIDYVLCS--------------------- 304
Query: 285 ECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCL 323
K WK W + L GSDH PVY L
Sbjct: 305 --------KEWK-----DWFQDANIQEGLMGSDHCPVYATL 332
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 532 GVNSSVCSHDQDEKKGKRFLDKERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVA 586
G N++ S+D+ +F+ E+ +V A W ++ L + P C+ H +PC++
Sbjct: 549 GGNTTTSSNDEASAMNAKFVLDEQKDVIDPIVAKESWSKL--LKKRVAPKCE-HNDPCIS 605
Query: 587 RVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
V KK G GR F++CAR GP+ E N CG F W+
Sbjct: 606 HVTKKQGINCGRSFYMCARPLGPSGQQEKNTEWRCGTFIWS 646
>gi|440793198|gb|ELR14386.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 224
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 121/255 (47%), Gaps = 44/255 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGS-LRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
MKIV++NVNGLR V + S L ADIIC QE+K+ + L DL GYE+FF
Sbjct: 1 MKIVSWNVNGLRAIVKKLPSGLGAFFKDIGADIICLQESKITEKMLTDDLTQIPGYEAFF 60
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+ + + GYSGV T+ R + + A+EG + E
Sbjct: 61 ATCKM----KQGYSGVCTYAR---------EGITLDAKEGLGVVKE-------------- 93
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
+D EGR ++TDHG F+L N+Y P R+ FK F +QK L Q
Sbjct: 94 ------MDDEGRVMVTDHGTFVLLNIYFPNG-GRGGDRLTFKSDFQDEVQKYCSELRRQD 146
Query: 180 RRIFVVGDLNIAPAAIDRCDA-GPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHP 233
R + V+GD+NIA +D ++ PD ++ E R W L ESG F D FR +HP
Sbjct: 147 RHVIVLGDVNIAHTELDIYNSDDPDINEHSGFLPEERKWLSGFL-ESG--FVDTFRERHP 203
Query: 234 ERREAYTCWPSNTGA 248
YT W +GA
Sbjct: 204 GEGGHYTWWSPRSGA 218
>gi|50548171|ref|XP_501555.1| YALI0C07436p [Yarrowia lipolytica]
gi|49647422|emb|CAG81858.1| YALI0C07436p [Yarrowia lipolytica CLIB122]
Length = 582
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 155/379 (40%), Gaps = 106/379 (27%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+ VT+N+ G+ +S + S + AD+IC QETKL+ LK + + GY
Sbjct: 1 MRFVTFNICGINNVLSYHPWNEQRSFEHMFAVLKADVICLQETKLQPHLLKREHALVPGY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK----- 110
+S++S + T + GYSGVA + + +V + AEEG TG L + SK
Sbjct: 61 DSYWSFSNT----KKGYSGVAVYVK-----HGIKV---LKAEEGLTGQLVSPDSKKGLTY 108
Query: 111 ----------------IMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
+ + + L ++DSEGR ++ D G ++F +Y P +E
Sbjct: 109 QQLYERQRERDGSSKSCIGAYPEGNPQRLFQVDSEGRSLVLDLGFCVVFGLYCPSTATEG 168
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR 214
R ++ +F +L++R L+ GR + V+GDLN+A D + K + I
Sbjct: 169 EERDAYRDDYFGLLEERVNLLVEAGREVVVMGDLNVARELYDSAEGMQALHKAK-HITLP 227
Query: 215 SMLVESGGSFFDVF---------------------------------RSKHPERREAYTC 241
++ + G F +VF R+KHP R + YTC
Sbjct: 228 TLGDKEEGRFVEVFEKLNPGQCKSWREAKVGRRVFHRLVPDLLQDSCRNKHPNRPDMYTC 287
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W N+G+RID++L + V + DIL
Sbjct: 288 WNVMMNYRPGNFGSRIDYVLASK---------------GLKVEDADIL------------ 320
Query: 302 RWKGGMSTRLEGSDHAPVY 320
LEGSDH PVY
Sbjct: 321 -------PHLEGSDHCPVY 332
>gi|258573517|ref|XP_002540940.1| hypothetical protein UREG_00453 [Uncinocarpus reesii 1704]
gi|237901206|gb|EEP75607.1| hypothetical protein UREG_00453 [Uncinocarpus reesii 1704]
Length = 499
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 148/584 (25%), Positives = 220/584 (37%), Gaps = 156/584 (26%)
Query: 91 ALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLK-----IDSEGRCVITDHGHFILFNV 145
+LP + T E S + G +F + ELL IDSEGRCVI + F+L V
Sbjct: 12 SLPKQKKGSTTPYRELSKDDQIGGYPNFEQLELLSFDPKTIDSEGRCVILEFPAFVLLGV 71
Query: 146 YGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNI---------APAAID 196
Y P + D R F+ F + L R L+ G+R+ V+GDLN+ A AI
Sbjct: 72 YCPA--NRDENRDAFRSDFLNALDMRVRNLIAIGKRVIVMGDLNVSSDILDSAHAIEAIR 129
Query: 197 RCDAGP-DFAKNEFRIWFRSMLVESGGS-----------FFDVFRSKHPERREAYTCWPS 244
+C +F + R+ F + LV+ G D+ R+ HP R+ YTCW
Sbjct: 130 KCKLTELEFLSSPPRLLF-NQLVKGGKPGTHEIEQKPQVLLDLCRNFHPNRQGMYTCWEQ 188
Query: 245 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 304
A NYG RID++LC+ D++ FV + E
Sbjct: 189 RINARPGNYGARIDYVLCS-------MDMEDW-FVWSDIQEG------------------ 222
Query: 305 GGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQ 364
L GSDH PVY + + RY R +++ ++ V
Sbjct: 223 ------LMGSDHCPVYALIKDT------------VRY----RDADRSIWDIVNPPGVFHA 260
Query: 365 G--------KSCKFSGSLPAESNS--------TGDTEDCSENVDRSLNNYCDSGILQGVY 408
G S SG L E + + SE + R+ + + LQ +
Sbjct: 261 GLRKQPAILTSLPLSGRLIPEFHRRRSLKEMFQAKSTPASELMGRAPDLPHNPRSLQQLK 320
Query: 409 CSSS--NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQ 466
S N +G A+ A + T + +N ISP V R+RK
Sbjct: 321 SPDSAWNDGVKG------------ASTADYQTAKRTPANKISPRPVKRSRK--------- 359
Query: 467 LSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCS 526
+ DTS N+ S Q+ + H +IP T S +
Sbjct: 360 --------------------LVDTSSNL-------SKGQQTL---AHFMEQIPPTQISKA 389
Query: 527 VHELHGVNSSVCS--HDQDEKKGKRFLDKER--NNVALLEWRRIQQLMETSIPLCKGHKE 582
+ +N C ++ K +R + E + A W ++ + P C+GH E
Sbjct: 390 ANYDVTLNDPGCVPLANKSSFKERRTISTENTPDPAAKESWAKL--FTRKAPPRCEGHNE 447
Query: 583 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 622
PC+ V KK GP GR F++C R GP+ + E C F W
Sbjct: 448 PCIVLVTKKAGPNCGRSFWICPRPLGPSGDKEIGTPWRCPTFIW 491
>gi|124441686|gb|ABN11482.1| DNA lyase [Ascosphaera apis]
Length = 533
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 40/262 (15%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QETK++R++L+ D+V+ G++ FFS + G TG +
Sbjct: 1 MFDVLEADIVVLQETKIQRKDLRDDMVLVPGWDCFFSFPKYKKDGITGIN---------- 50
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
P ++ + A E G E + S + +DSEGRCVI + F+L
Sbjct: 51 PSTTKDTAFRDLPSH------EQIGGYPSEEQLNLSLVDAETLDSEGRCVILEFQAFVLI 104
Query: 144 NVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--- 200
VY P +E +R F+L F V + R L+ G+RI V GDLNI+ D A
Sbjct: 105 GVYLPAVRNE--LRDDFRLGFLRVFECRVRNLIALGKRIIVAGDLNISRDVQDSASALAD 162
Query: 201 --GPDFAKNEF-----RIWFRSMLVESGG------------SFFDVFRSKHPERREAYTC 241
G ++ ++ R F ++ +S +D+ R HP R+ +TC
Sbjct: 163 VLGERLSREQYISTPSRALFNELVTDSSDYDSSEPNNNAQCVLWDICRDFHPSRKGMFTC 222
Query: 242 WPSNTGAEQFNYGTRIDHILCA 263
W T A N+G+RID+ILC+
Sbjct: 223 WDMKTNARPGNFGSRIDYILCS 244
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 547 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 606
G+++ +++ + W I P C+GH EPC++ V KK G GR F++C R
Sbjct: 441 GEKYDRYSKDDDTIKAWANI--FTPQQAPSCEGHGEPCISLVTKKAGLNQGRSFWMCPRP 498
Query: 607 EGPASNPEAN----CGYFKW 622
GP+ + E C F W
Sbjct: 499 LGPSGSAEKGTQWRCATFIW 518
>gi|399887720|ref|ZP_10773597.1| exodeoxyribonuclease III [Clostridium arbusti SL206]
Length = 254
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 131/267 (49%), Gaps = 47/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M I ++NVNGLR +S+ G + ++ ++ DI+C QETKL+ L +L +GY S+FS
Sbjct: 1 MNIYSWNVNGLRA-ISKKGFF-EFINEYNPDILCIQETKLQLDNLSEELKGIEGYNSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + + GYSGVAT+ + K P++ + G G+E F
Sbjct: 59 CAK-----KKGYSGVATYTKEK----------PISVKYGI-------------GIERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR +IT+ +FILFN+Y P +D R+++KL F+ L + L +G+
Sbjct: 89 ------DSEGRILITEFNNFILFNIYFPNG-QKDEERLKYKLDFYDALLEYLNKLKIEGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID +A + + F R W ++ + D FR H +
Sbjct: 142 KLIICGDYNTAHNEIDIKNAKANEKYSGFLPIERAWIDKFIL---NGYVDTFRYIHKDEI 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ Y+ W A + N G RID+
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYFFVT 224
>gi|373458129|ref|ZP_09549896.1| exodeoxyribonuclease III Xth [Caldithrix abyssi DSM 13497]
gi|371719793|gb|EHO41564.1| exodeoxyribonuclease III Xth [Caldithrix abyssi DSM 13497]
Length = 255
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 129/271 (47%), Gaps = 46/271 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ G + ++ DADIIC QETKL+ +++ +++ Y +++
Sbjct: 1 MKLISWNVNGLRA-VTRNGFIDQV-KKLDADIICLQETKLQNEQIPEEILRLTDYHQYWN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVATF R + P E G+E F
Sbjct: 59 FAQ-----RKGYSGVATFSRQE----------PAKIEREL-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR +IT + F+LFNVY P D R+ +KL+F+ L K L G
Sbjct: 89 ------DSEGRVLITHYDSFVLFNVYFPNG-QRDHGRVAYKLEFYAELLKMANALRDAGN 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID + + + F R W L E + D FR +P+ +
Sbjct: 142 KVIITGDFNTAHREIDLKNPKSNQKTSGFLPEERAWIDRYLQE---GWIDTFRHFYPQLK 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
+ YT W A Q N G RID+ + + L
Sbjct: 199 DQYTWWSYRFNARQRNIGWRIDYFMNSENLL 229
>gi|410670052|ref|YP_006922423.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
gi|409169180|gb|AFV23055.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
Length = 261
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 129/267 (48%), Gaps = 47/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNG+R V + G L + L DI+C QETK ++++L SDL +GY S+FS
Sbjct: 8 IRIISWNVNGIRS-VQKKGFL-EWLQKEQPDILCIQETKAQKEQLGSDLTEVNGYRSYFS 65
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + + + P++ + GF
Sbjct: 66 SAE-----KKGYSGVALYTKKE----------PLSIKCGFG------------------- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ K DSEGR +I D+G FIL N+Y P + R+ +K++F+ + L QGR
Sbjct: 92 --IPKFDSEGRILIADYGDFILLNIYFPNGKASPE-RLAYKMEFYDAFLEYALELKKQGR 148
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD+N A ID + + F R W L + + D FRS HPE
Sbjct: 149 KLIICGDVNTAHREIDLARPKENETISGFLPEERAWIDRFLSQ---GYVDTFRSLHPEPG 205
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ YT W +GA N G RID+ +
Sbjct: 206 Q-YTWWSMRSGARTRNVGWRIDYFYVS 231
>gi|295663072|ref|XP_002792089.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279264|gb|EEH34830.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides sp.
'lutzii' Pb01]
Length = 570
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 151/636 (23%), Positives = 229/636 (36%), Gaps = 166/636 (26%)
Query: 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSKIMEGLEDF---------- 118
YSGV + R P+ AEEG TG+L +S + L F
Sbjct: 10 YSGVVIYTR-------NSKCCPIRAEEGITGILCPPASSSTSPFPALTSFREMPEEQQIG 62
Query: 119 ----------SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
S + +DSEGRCVI + F+L VY P + D +R F+ F + +
Sbjct: 63 GYPTPEQLALSNIDAATLDSEGRCVILEFPAFVLLGVYCPA--NRDEMRDGFRKAFVNAV 120
Query: 169 QKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLV 218
R L+ G+R+ + GDLNI+ + ID A +F R F ++
Sbjct: 121 DARVRNLVDMGKRVILTGDLNISGSEIDSARALEEIRKSTTTNSEFVSAPVRRIFNQLV- 179
Query: 219 ESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
SGG D+ R HP+RR YTCW A NYG+RID++LC+
Sbjct: 180 -SGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSRIDYVLCS-- 236
Query: 266 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
+ F ++ E L GSDH PVY + +
Sbjct: 237 ------LIMRDWFCASNIQE------------------------GLMGSDHCPVYADIKD 266
Query: 326 VPEIP-----------------------QHSTPS---LASRYLPIIRGVQQTLVSVLMKR 359
+ ++ST L+ R +P Q+ + ++ R
Sbjct: 267 KVSLDNMEVHILDILNPEGMFVNGERKREYSTADVLPLSGRLIPEF--CQRRSIKDMLFR 324
Query: 360 EVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGE 419
+ +K G+ + NS G T D N + G S++ G
Sbjct: 325 QSSK--------GASQGDVNSAGVTNPPVPQKDTLGTN------ISGPASPSTSTTPWGP 370
Query: 420 FTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNV 479
T D + + + S+ I+ AR K +K SLK FF + +
Sbjct: 371 STPKRSQQGDDGTTSRSKRLKRSQSSAIA-----TARTKGQK------SLKGFFGLKGSG 419
Query: 480 SHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCS 539
S D+ + + V+D + E E+ I YSC + G
Sbjct: 420 STADDQTNSP-------KVSDPAAVGNEQQEAAKSPLDI---TYSCPPGDGCGPEDDGTQ 469
Query: 540 HDQDEKKGKRFLDKERNNVALLE--------WRRIQQLMETSIPLCKGHKEPCVARVVKK 591
Q E + N+ ++ W RI + P C GH EPC++ V KK
Sbjct: 470 GQQQETAEPLANGGDSNDDCIVHDPIANKELWSRI--FTKKPAPRCSGHHEPCISLVTKK 527
Query: 592 PGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 623
G GR F++CAR GP+ + + C F W+
Sbjct: 528 AGINCGRSFWICARPLGPSGVKKTGDQWRCDTFIWS 563
>gi|119192056|ref|XP_001246634.1| hypothetical protein CIMG_00405 [Coccidioides immitis RS]
Length = 551
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 112/219 (51%), Gaps = 33/219 (15%)
Query: 2 KIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
++ T+NVNG+R S S + + D +ADII QE K++R++L+ D+V+ G++
Sbjct: 4 RLTTWNVNGIRNPFSYEPWRGTQSFQGMFDLLEADIIVLQELKIQRKDLRDDMVLVPGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----ETSGSKIM 112
FFS K + GYSGVA + R P+ AEEG TG+L TS + +
Sbjct: 64 CFFSLP----KYKKGYSGVAIYTR-------NATCSPIYAEEGVTGILCPPNSTSSYREL 112
Query: 113 ---EGLEDFSKDELLK--------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
E + + DE L +DSEGRCVI + F+L VY P + D R F+
Sbjct: 113 PESEQIGGYPTDEQLSTSELSAETLDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGFR 170
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
L F + L R L+ G+R+ V GDLNI+ ID A
Sbjct: 171 LGFLNALDHRIRNLISLGKRVVVAGDLNISRDEIDSAHA 209
>gi|367010570|ref|XP_003679786.1| hypothetical protein TDEL_0B04460 [Torulaspora delbrueckii]
gi|359747444|emb|CCE90575.1| hypothetical protein TDEL_0B04460 [Torulaspora delbrueckii]
Length = 522
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 153/379 (40%), Gaps = 96/379 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
M++VT+NVNGLR Q S SL K+ D FD+DII QE K R + + G
Sbjct: 16 MRLVTFNVNGLRTLFHYQPFSDLNQSLEKVFDYFDSDIITLQELKTDRPSI-TKWGKVPG 74
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKIME 113
+ SF S + + GYSGV + R+ AL V AEEG TGLL K
Sbjct: 75 FYSFISIP----QAKRGYSGVGCWVRILPDDHPMAEALKVTKAEEGITGLLSIKTGKSST 130
Query: 114 ----------------GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
GL+D + E LK+DSEGRCV+ + + I+ NVY P
Sbjct: 131 SYRDDPNIGIGGYESLGLDDEDESEGLKLDSEGRCVMIELACNIIVINVYCPANSGLSAE 190
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC------------------ 198
F++++ VL KR L G+R+ ++GD+N+ ID
Sbjct: 191 GSAFRMKYLKVLFKRIRNLSEMGKRVILMGDVNVCRDLIDHAEGLEQASIRIGDGVSGSK 250
Query: 199 ------DAGPDFAKN---EFRIWFRSMLVES-------GGSFFDVFR-SKHPERREAYTC 241
DA F N R ML +S GG D R + +R +AYT
Sbjct: 251 IESKHRDACEQFIINPDTPHRRMLNQMLADSILPEFAEGGILLDTTRLIQGRDRLKAYTV 310
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W + + NYG+RID IL + + +V DIL
Sbjct: 311 WNTLKNSRPVNYGSRIDFILAS-------------KSLKTNVTSADIL------------ 345
Query: 302 RWKGGMSTRLEGSDHAPVY 320
+ GSDH PVY
Sbjct: 346 -------PEVTGSDHCPVY 357
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLCK H + R + P GR+F++C +G + + ++CG+F+WA
Sbjct: 476 PLCK-HGLKAIQRTSRTPS-NPGRKFWICKLPKGSSDDESSSCGFFQWA 522
>gi|307109978|gb|EFN58215.1| hypothetical protein CHLNCDRAFT_142087 [Chlorella variabilis]
Length = 483
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 127/276 (46%), Gaps = 50/276 (18%)
Query: 1 MKIVTYNVNGL----RQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
MK++ +N+N L R V + GS DI C QE+K+ +L +L DGY+
Sbjct: 1 MKLLCWNINSLAPTVRNAVLKHGSWLGFFQEHGLDIACLQESKVPEDKLTKELCCVDGYQ 60
Query: 57 SFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS 109
SF++ +R +GR G++ A CR K +S
Sbjct: 61 SFWAHSR---QGR-GHAPDIPPGPAAAQRCREKKGYS----------------------- 93
Query: 110 KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRA-DSEDTVRIQFKLQFFHVL 168
G+ ++ D + +ITDHG F+L NVY P A D D R+ +KL+F L
Sbjct: 94 ----GVTTYASDAYAPL-----VLITDHGAFVLVNVYVPNAGDRPDRPRLHYKLRFLAAL 144
Query: 169 QKRWEFLLCQGRRIFVVGDLNIAPAAID-RCDAGPDFAKNE-FRIWFRSMLVESGGSFFD 226
+++ E L GR + +VGD N+ A D D P + +E + R+ L ++ D
Sbjct: 145 RRKCEELAVAGRELLLVGDFNVPAEARDVHPDLLPGGSLDELYGQEERAALHALTAAYPD 204
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 262
V+R HP+ Y+ W T A FN G RID++LC
Sbjct: 205 VWRRLHPQEAATYSVWNEKTSARAFNRGLRIDYVLC 240
>gi|440780818|ref|ZP_20959289.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
gi|440221406|gb|ELP60611.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
Length = 254
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 146/326 (44%), Gaps = 77/326 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NVNGLR VS+ G + + + DI+C QETKL+ + L +L Y S+FS
Sbjct: 1 MKIYSWNVNGLRA-VSKKGFF-EFVSYENPDILCIQETKLQLETLSEELKNIKEYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVAT+ + K PV+ + G G+E F
Sbjct: 59 FAE-----RKGYSGVATYTKKK----------PVSIKHGI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR +IT+ FILFN+Y P +D R+ +KL+F+ L + + L + +
Sbjct: 89 ------DKEGRILITEFNEFILFNIYFPNG-QKDEERLNYKLEFYDALFEYLDKLKIEDK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERRE 237
+I + GD NIA ID +A + + F R ++ + G + D FRS H E +
Sbjct: 142 KIIICGDYNIAHREIDIKNAKANEKISGFLPIERKLIDKFISKG--YVDTFRSIHREEIK 199
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 297
Y+ W A + N G RID+ L L +V E DIL D
Sbjct: 200 -YSWWSYRFKARERNAGWRIDYFLVTENLLE-------------NVKEADILND------ 239
Query: 298 GNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ GSDH PV + L
Sbjct: 240 -------------VMGSDHCPVSILL 252
>gi|154291711|ref|XP_001546436.1| hypothetical protein BC1G_15146 [Botryotinia fuckeliana B05.10]
Length = 578
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 119/256 (46%), Gaps = 58/256 (22%)
Query: 29 DADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSST 88
+ DI QETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 4 EEDIFLMQETKIQRKDLRDDMVLVPGWDVYFSLP----KYKKGYSGVAIYTR-------N 52
Query: 89 EVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL-----------------KIDSEGR 131
V P+ AEEG TG+L S D KD+ + +DSEGR
Sbjct: 53 SVCAPIRAEEGITGVLTPPNSTT--SFRDLPKDQQIGGYPTGAQLQDYFLDAATLDSEGR 110
Query: 132 CVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW----EFLLCQGRRIFVVGD 187
CVI + FIL VY P + D R +F++ F + L RW + LL I +VG
Sbjct: 111 CVILEFPAFILIGVYCPA--TRDETRDEFRIGFLNALDTRWSNTYQPLLAGYLIISLVGG 168
Query: 188 LNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG 247
I DR D G E ++ +D+ R HP R+ +TCW
Sbjct: 169 KVIG----DR-DEG-----TEPQV------------MWDISRGFHPTRKGMFTCWDQKMN 206
Query: 248 AEQFNYGTRIDHILCA 263
A N+G+RID++LC+
Sbjct: 207 ARPGNFGSRIDYVLCS 222
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 544 EKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 601
EK K DKE ++ VA W + L+ IP HKEPC++ + KK G GR F+
Sbjct: 480 EKTCKSRQDKEVHDPIVAKESWSK---LLTKRIPPKCEHKEPCISHITKKQGINRGRSFY 536
Query: 602 VCARAEGPASNPEAN----CGYFKWA-FSKSK 628
+C R GP+ E N C F W+ SKS+
Sbjct: 537 MCPRPLGPSGQQEKNTEWRCNTFIWSTLSKSE 568
>gi|354546880|emb|CCE43612.1| hypothetical protein CPAR2_212560 [Candida parapsilosis]
Length = 481
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 146/324 (45%), Gaps = 67/324 (20%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKS--DLVMA 52
++ +T+NVNG++ + + D +ADII QE KL Q L + ++
Sbjct: 21 IRFITFNVNGIKTVFNYHPWNKINNDFNTMFDLLEADIITLQELKLTEQSLTTLKNIGHL 80
Query: 53 DGYESFFSC-TRTSDKGRTGYSGVATFCRV-KSPFSSTEVALPVAAEEGFTGLL-ETSGS 109
Y+SF S TR + GYSGV F R+ ++P + + AEEG TG L + +G+
Sbjct: 81 QSYKSFISLPTR-----KKGYSGVGLFVRIPQTPLQKRYLTV-TKAEEGLTGWLCDKTGN 134
Query: 110 KI------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKL 162
+ G D ++ + L IDSEGRCV+ + + ++F +Y P S +F+L
Sbjct: 135 PYRSQDDNIGGYTDINEQQGLHIDSEGRCVVVELASNCVVFALYCPANSSGTDEGEEFRL 194
Query: 163 QFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDA---------------GPDF-- 204
QF L KR L +G+ + ++GD+N+ ID + G F
Sbjct: 195 QFLQQLMKRCHNLKFNEGKDVIIMGDINVCLDLIDSAEGINERIMAKQITDVSDGNQFEV 254
Query: 205 -----------------AKNEFRIWFRSMLVE------SGGSFFDVFRSKHPERREAYTC 241
NE+ I RSM+ E + +D R RR+ YT
Sbjct: 255 ANYDECCKFKQSKRARELMNEYVI--RSMIQECTSQTLTNQFLYDTTRYIQGRRRKMYTV 312
Query: 242 WPSNTGAEQFNYGTRIDHILCAGP 265
W + T + Q NYG+RID ILC+ P
Sbjct: 313 WNTLTNSRQVNYGSRIDLILCSSP 336
>gi|385809097|ref|YP_005845493.1| exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
gi|383801145|gb|AFH48225.1| Exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
Length = 262
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 127/267 (47%), Gaps = 46/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+++ ++NVNG+R V + G + +L + DI+C QETK +L +L+ +GY+SFFS
Sbjct: 4 IRLYSWNVNGIRA-VHKKGFVDWVLKE-NPDILCLQETKAHPDQLPKELISINGYQSFFS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
S K + GYSGVA + ++ PV + GF
Sbjct: 62 ----SSKVKKGYSGVAVYSKLN----------PVDVKYGF-------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ + D EGR +I D+ FILFN+Y P D R+++KL F+ + + L+ QGR
Sbjct: 88 -DIPRFDDEGRTLILDYKEFILFNIYFPNGKMSDE-RLKYKLDFYDAFLEYAKKLIQQGR 145
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+I V GD+N A ID + + F R W L F D FR + ++
Sbjct: 146 KIIVCGDVNTAHKEIDLARPKENEKTSGFLPIERQWIDKFL---ANGFVDTFRMFN-DQP 201
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
YT W T A + N G RID+ +
Sbjct: 202 GNYTWWDMQTRARERNVGWRIDYFFVS 228
>gi|317151124|ref|XP_001824462.2| DNA lyase [Aspergillus oryzae RIB40]
Length = 556
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 35/220 (15%)
Query: 2 KIVTYNVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R + + + + +ADI+ QETK++R++L+ D+V+ G++
Sbjct: 4 RITTWNVNGIRNPFAYEPWRGKRTFEAMFEILEADIVVLQETKIQRKDLRDDMVLVPGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL------------ 104
FS R+ + GYSGV + R P+ AEEG TG+L
Sbjct: 64 CHFSLPRS----KKGYSGVVIYTR-------NATCAPLRAEEGLTGVLCPPNSSVPFRDL 112
Query: 105 ----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ G E L D +DSEGRCVI + F+L +Y P + D R F
Sbjct: 113 PLDRQIGGYPTTEQLSTLELDA-ATLDSEGRCVILEFPAFVLLGLYCPA--NRDESRDSF 169
Query: 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
+ F ++ R L+ G+R+FV GDLNI+ ID A
Sbjct: 170 RQGFLDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHA 209
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 438 TITQGSSNHISPFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLN 493
T+ + S P V R++ +++ Q +LK FF + VS + I++T
Sbjct: 364 TVRKRSEKSDPPPSVKRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-T 418
Query: 494 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 553
+ V S +P S S D + +H V ++ S+ F+ +
Sbjct: 419 PDTPVQAMERSSGPLPASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQ 474
Query: 554 ERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 608
V + +W ++ + +P+C+GH+EPC++ KKPG GR F++C R G
Sbjct: 475 NSETVIDPIVSKEDWSKL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLG 532
Query: 609 PASNPEAN----CGYFKWA 623
P+ N E C F WA
Sbjct: 533 PSGNKEKGTQWRCATFIWA 551
>gi|16904257|gb|AAL30837.1|AF440399_1 DNA lyase, partial [Zymoseptoria tritici]
Length = 491
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 130/553 (23%), Positives = 199/553 (35%), Gaps = 142/553 (25%)
Query: 126 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 185
+D+EGRCVI + F+LF VY P S ++ F+ FF L R L+ QG+R+ +V
Sbjct: 17 LDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFRSGFFLALDCRIRNLMRQGKRVVLV 74
Query: 186 GDLNIAPAAID----------RCDAGPDFAKNEFRIWFRSMLVES-----------GGSF 224
GDLN+ ID R D R F +L + G
Sbjct: 75 GDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQLLTDGEVIGERDEGRDAGVL 134
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 284
+D R HP RR YT W + A N G+RID +L A + + V
Sbjct: 135 WDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFVLVA-------------DVMQSWVK 181
Query: 285 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY-------------MCLGEVPEIPQ 331
+ +I L GSDH PVY + L E+ P
Sbjct: 182 DANI-------------------QEGLLGSDHCPVYADFHDVVDDHGRNVSLLEIMNPPG 222
Query: 332 -------------HSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLP 375
STP+ +++ +P R ++ + +K+ + Q + SG P
Sbjct: 223 VFENGQRKVEWTLQSTPAFSAKRMPEFDKRRSIKSMFAAPPVKKFASSQLERTP-SGIDP 281
Query: 376 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 435
A + + + D S + D++ + D A
Sbjct: 282 A-AQANAPSADISPHEDKAAASQSDE--------------------------------AR 308
Query: 436 HSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF-HKRSNVSHDDNNSITDTSLNV 494
T + S P + + GQ SLK FF K S V D + + ++
Sbjct: 309 PPTKRKASIPSKDPLPSKKQKDTKAAPSKGQKSLKGFFSSKASPVKPDLQSQESSQKTSI 368
Query: 495 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 554
+ + +L + P + S + P S S V + + S ++ ++
Sbjct: 369 TSPPAEVALPPPQSPSTTFPSQEPPSPTASAS-PTADQVATQIASAERSQR--------- 418
Query: 555 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 614
W + + PLC+GH+EPC KK G GR F++CAR GP+ E
Sbjct: 419 -------SWGAL--FTKPPAPLCEGHEEPCKTLQTKKKGSNQGRSFWMCARPLGPSGEKE 469
Query: 615 AN----CGYFKWA 623
CG F WA
Sbjct: 470 KGTEWRCGTFIWA 482
>gi|170759835|ref|YP_001786903.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
gi|169406824|gb|ACA55235.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
Length = 253
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 48/297 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FA-----AKKGYSGVATYTKVK----------PISVKHSM-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR +IT+ +F L N+Y P D R+Q+KL F+ L + L+ +G+
Sbjct: 89 ------DSEGRILITEFKNFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
+ Y+ W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|406606096|emb|CCH42456.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Wickerhamomyces
ciferrii]
Length = 558
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 138/316 (43%), Gaps = 57/316 (18%)
Query: 1 MKIVTYNVNGLRQRV-----SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++ +T+N+NG R ++ + + DS DII QE K+ +++ + GY
Sbjct: 19 VRFITFNINGYRTVFHYHPWNKLRTFNNMFDSLHGDIITLQEIKVAAKDINHSIGKIPGY 78
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKS--PFSSTEVALPVA-AEEGFTGLLETSGSKI- 111
+F + + GYSGVA + R+ S + AL V AEEG TG+L++ +++
Sbjct: 79 NAFLTVPSL----KKGYSGVAVYVRIPKIDESESVKAALKVIKAEEGITGILKSHDTQVE 134
Query: 112 -------MEGLEDFSKDELLKIDSEGRCVITDHGH-FILFNVYGPRADSEDTVRIQFKLQ 163
+ G + +D +ID+EGRC+I + G+ ++ +VY P QF+LQ
Sbjct: 135 YRNSDLSIGGYPNLEEDISHQIDNEGRCIILEMGNGIVVISVYCPANSMGTEEGEQFRLQ 194
Query: 164 FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----------NEF---- 209
FF L R L G+ + ++GD+NI+ ID D D K ++F
Sbjct: 195 FFEALFSRIRNLEKLGKHVVLMGDINISKDLIDSADGINDRMKMGKLLKISDPHKFEELN 254
Query: 210 -------------RIWFRSMLVES---------GGSFFDVFRSKHPERREAYTCWPSNTG 247
RI +L++S D R + YT W + T
Sbjct: 255 REQALNFIRRSLPRIMLNELLIDSIDQDMKSEKSRVMIDTVRKIQGRKHGLYTVWNTLTN 314
Query: 248 AEQFNYGTRIDHILCA 263
+ NYG+RID IL
Sbjct: 315 SRPGNYGSRIDLILAT 330
>gi|168182409|ref|ZP_02617073.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
gi|182674470|gb|EDT86431.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
Length = 253
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 142/297 (47%), Gaps = 48/297 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FA-----AKKGYSGVATYTKVK----------PISVKHSI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR +IT+ F L N+Y P D R+Q+KL F+ L + L+ +G+
Sbjct: 89 ------DSEGRILITEFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
+ Y+ W A + N G RID+ + L + + + N V + C I+++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPIMLELK 253
>gi|448513794|ref|XP_003867011.1| Apn2 class II abasic (AP) endonuclease [Candida orthopsilosis Co
90-125]
gi|380351349|emb|CCG21573.1| Apn2 class II abasic (AP) endonuclease [Candida orthopsilosis Co
90-125]
Length = 473
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 153/365 (41%), Gaps = 87/365 (23%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKS--DLVMA 52
++ VT+NVNG++ + + D AD+I QE KL Q L + ++
Sbjct: 21 IRFVTFNVNGVKTVFNYHPWNKIDNDFNTMFDLLQADVITLQELKLTEQSLSTLKNIGHL 80
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRV-KSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
Y+SF S + GYSGV F R+ K+P + + V AEEG TG L K
Sbjct: 81 KDYKSFISLP----TKKKGYSGVGLFVRIPKTPLQQKYLTV-VKAEEGLTGWLADKSGKS 135
Query: 112 -------MEGLEDFSKDELLKIDSEGRCVITDH-GHFILFNVYGPRADSEDTVRIQFKLQ 163
+ G D + + L+IDSEGRCV+ + + ++F +Y P S +F+L+
Sbjct: 136 YRLQNDNIGGYTDIDEKQGLQIDSEGRCVVVELVNNCVVFALYCPANSSGTDEGEEFRLR 195
Query: 164 FFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAK-------------- 206
F L KR L QG+ + ++GD+N+ ID + D AK
Sbjct: 196 FLQQLLKRCHNLKFKQGKDVIIMGDINVCLDLIDSAEGINDRLVAKQITDISDGCSFELA 255
Query: 207 ------------------NEFRIWFRSMLVE-----SGGSF-FDVFRSKHPERREAYTCW 242
N + I RSM+ E SG F +D R R++ YT W
Sbjct: 256 NYNECCKFKQSRRARELMNAYVI--RSMVQERIDATSGDQFLYDTTRYIQGRRKKMYTVW 313
Query: 243 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN-----------ECDILID 291
+ T + Q NYG+RID ILC+ S + + C N C + D
Sbjct: 314 NTLTSSRQVNYGSRIDLILCS-----------SQDMLKCVSNADIWPFILGSDHCPVFTD 362
Query: 292 YKRWK 296
+ WK
Sbjct: 363 FDPWK 367
>gi|187779869|ref|ZP_02996342.1| hypothetical protein CLOSPO_03465 [Clostridium sporogenes ATCC
15579]
gi|187773494|gb|EDU37296.1| exodeoxyribonuclease III [Clostridium sporogenes ATCC 15579]
Length = 253
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 47/283 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFLEWIGEENPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ + + P++ + G G+E F
Sbjct: 59 FAH-----KKGYSGVATYTKEE----------PISVKHGI-------------GIERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR +IT+ FIL N+Y P D R+Q+KL F+ L + L+ +G+
Sbjct: 89 ------DSEGRILITEFKDFILLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVEEGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKASGFLRIERDWL-DKIIERG--YIDTFRNMNPDKI 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279
+ Y+ W A + N G RID+ + L + + + N V
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEV 240
>gi|224371156|ref|YP_002605320.1| ExoA protein [Desulfobacterium autotrophicum HRM2]
gi|223693873|gb|ACN17156.1| ExoA [Desulfobacterium autotrophicum HRM2]
Length = 262
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 140/322 (43%), Gaps = 74/322 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+++V++NVNGLR V + K ++ DAD++ QETKL + ++++ DGY+S ++
Sbjct: 6 LRLVSWNVNGLRAAVKK--DFLKSMEQLDADVLMLQETKLSEDQRTDEMLLVDGYDSHWA 63
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + R +P+A G G+E F
Sbjct: 64 YSSV----KKGYSGVAAYTR----------PVPLAVAPGI-------------GIERF-- 94
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D FILFNVY P D R+Q+K+ F+ + L +GR
Sbjct: 95 ------DNEGRILELDFEDFILFNVYFPNGQMSDE-RLQYKMDFYEAFFAHADRLRKKGR 147
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERRE 237
+ + GD N A ID + P+ ++ F R + LVE G + D FR +P+ +
Sbjct: 148 SLVITGDFNTAHNEIDLKNPKPNSKRSGFLPVEREVLDRLVERG--YVDTFRHFNPDTVK 205
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 297
Y+ W A N G RID+ D+ +VT + DIL
Sbjct: 206 -YSWWSYRFNARANNAGWRIDYFFVT-------QDIIDKGWVTRTFIDNDIL-------- 249
Query: 298 GNAPRWKGGMSTRLEGSDHAPV 319
GSDH PV
Sbjct: 250 ---------------GSDHCPV 256
>gi|397904085|ref|ZP_10505014.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
gi|343178831|emb|CCC57913.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
Length = 252
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 149/326 (45%), Gaps = 77/326 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I T+NVNGLR + + G L + D D DI+C QETKL+ +++ ++ GY +FS
Sbjct: 1 MRIYTWNVNGLRSILKK-GFLDFIKDE-DPDILCLQETKLQEEQIDDEIKNLKGYYKYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA F +V+ + + G+ G+E+F
Sbjct: 59 FA-----NKKGYSGVAIFTKVE-------------PKNIYYGI----------GIEEF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +I ++ FILFN+Y P D R+ +KL+F+ + + LL +G+
Sbjct: 89 ------DTEGRILIAEYEDFILFNIYFPNGKMSDE-RLDYKLRFYDAIMDYSKNLLEEGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERRE 237
+ + GD N A ID + + + F R + +E G F D +R +P++ E
Sbjct: 142 NLIICGDYNTAHREIDLKNPKQNEKSSGFLPIEREYIDRFLEIG--FIDAYRHFYPDKIE 199
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 297
YT W A + N G RID+ S+NF++ + + +IL
Sbjct: 200 -YTWWSYMFKAREKNVGWRIDYFFV------------SNNFIS-KIKDVEIL-------- 237
Query: 298 GNAPRWKGGMSTRLEGSDHAPVYMCL 323
T + GSDH PV + +
Sbjct: 238 -----------THIHGSDHCPVKLTI 252
>gi|156838338|ref|XP_001642876.1| hypothetical protein Kpol_1007p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156113453|gb|EDO15018.1| hypothetical protein Kpol_1007p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 529
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 160/382 (41%), Gaps = 100/382 (26%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ V++NVNG+R Q SQ SL+ + FDAD+I FQE K + + S D
Sbjct: 16 IRFVSFNVNGVRTLFHYQPFSQMNQSLKASFEYFDADVITFQELKTEKYGI-SKWGKVDD 74
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSS---TEVALPVAAEEGFTGLL--ETSGS 109
+ SF S + GYSGV C V+ P E V AEEG TG L + G
Sbjct: 75 FYSFISIPSN----KKGYSGVG--CWVRKPEKDHPLYEALKVVKAEEGITGYLTVKVGGK 128
Query: 110 KIME--------------GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSED 154
++ GL++ + DE L +DSEGRCV+ + + ++FNVY P +
Sbjct: 129 EVRYKDDTSQGIGGYESLGLDETNDDEALTLDSEGRCVVVELACNIVVFNVYCPANSGQT 188
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-------------G 201
F+L++ VL KR L G+ I ++GD+N ID+ +A G
Sbjct: 189 DDGQLFRLKYLKVLYKRIRNLKALGKNIVLMGDINSCRDLIDQAEALEANMIQITSTTTG 248
Query: 202 PDFAKN------EF--------RIWFRSMLVES-------GGSFFDVFRSKHPERR-EAY 239
D + EF R ML +S G D R ++R + Y
Sbjct: 249 EDIEEKYSQLAYEFVMNPEAPQRRMLNQMLTDSIIPGISQDGILVDTTRYVQTKKRLKMY 308
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
T W + NYG+RID IL + +LQ ++ + DIL D
Sbjct: 309 TVWNTLKNTRPVNYGSRIDFILLS-------KELQD------YILQADILPD-------- 347
Query: 300 APRWKGGMSTRLEGSDHAPVYM 321
+ GSDH PVY+
Sbjct: 348 -----------VMGSDHCPVYL 358
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLCK H + + K P +GRRF+ C + G + N +CG+F+W
Sbjct: 482 PLCK-HGIEAILKTSKTP-TNYGRRFWSCEKPNGDSGNKAGSCGFFQWV 528
>gi|255020174|ref|ZP_05292243.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340783591|ref|YP_004750198.1| exodeoxyribonuclease III [Acidithiobacillus caldus SM-1]
gi|254970316|gb|EET27809.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340557742|gb|AEK59496.1| Exodeoxyribonuclease III [Acidithiobacillus caldus SM-1]
Length = 253
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 146/330 (44%), Gaps = 85/330 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R V++ G LR+ + + D++C QETK++ +L D G+ S ++
Sbjct: 1 MRLYSWNVNGWRA-VTRHG-LREWVAATPMDVLCVQETKVQLAQLDPDEAQLPGFHSLWA 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVATF R P ++ L G DF
Sbjct: 59 -----EAERPGYSGVATFFR--DPCTAVRAQL---------------------GRADF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR V+TD G F L+NVY P +D R+ FKL F+ ++ L+ +GR
Sbjct: 89 ------DAEGRVVVTDCGDFDLYNVYFPNG-KKDAQRLAFKLDFYAFFLEQVTALVRRGR 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ GD+N A +D A P+ + E R W E+G F D FR HPE
Sbjct: 142 SVIFCGDVNTAHTPLDL--ARPEANRRVSGFLPEERAWL-DRWREAG--FIDSFRHFHPE 196
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
R Y+ W +GA + + G R+D+ L
Sbjct: 197 ERR-YSWWSLRSGARERDVGWRLDYFWVHESLL--------------------------- 228
Query: 295 WKPGNAPRWKG-GMSTRLEGSDHAPVYMCL 323
PR KG G++T + G+DH PV++ L
Sbjct: 229 ------PRLKGAGIATEVRGADHCPVWLEL 252
>gi|316994995|gb|ADU79051.1| DNA lyase, partial [Zymoseptoria tritici]
Length = 492
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 125/533 (23%), Positives = 199/533 (37%), Gaps = 102/533 (19%)
Query: 126 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVV 185
+D+EGRCVI + F+LF VY P S ++ F+ FF L R L+ QG+R+ +V
Sbjct: 17 LDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFRSGFFLALDCRIRNLMRQGKRVVLV 74
Query: 186 GDLNIAPAAID----------RCDAGPDFAKNEFRIWFRSMLVES-----------GGSF 224
GDLN+ ID R D R F +L + G
Sbjct: 75 GDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQLLTDGEVIGERDEGREAGVL 134
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD------LQSHNF 278
+D R HP RR YT W + A N G+RID +L A D L +
Sbjct: 135 WDTTRGFHPARRGMYTHWDTKKNARPGNSGSRIDFVLVADVMQSWVKDANIQEGLLGSDH 194
Query: 279 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 338
+ + D++ D+ GG + LE + V+ E STP+ +
Sbjct: 195 CPVYADFHDVVADH------------GGNVSLLEIMNPPGVFENGERKVEWTLQSTPAFS 242
Query: 339 SRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL 395
++ +P R ++ + +K+ + Q K + + A + + + D S D++
Sbjct: 243 AKRMPEFDKRRSIKSMFAAPPVKKTTSSQLK--RTPSGIDAAAQANVPSVDISPMEDKAA 300
Query: 396 NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRA 455
+ D + + A++ S +
Sbjct: 301 ASLSD---------------------EARPPTKRKASIPSKDALPNKKQKDT-------- 331
Query: 456 RKKAKKSQLGQLSLKSFF-HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 514
KA S+ GQ SLK FF K S V D + + ++ + + + + P +
Sbjct: 332 --KAAPSK-GQKSLKGFFSSKTSPVKPDLKSQESSQKSSITSPPAEVAFPPPQSPSTTFP 388
Query: 515 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 574
S + P S S V + + S ++ ++ W + +
Sbjct: 389 SQEPPSPTASAS-PTADQVATQIASAERSQR----------------SWGAL--FTKPPA 429
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 623
PLC+GH+EPC KK G GR F++CAR GP E CG F WA
Sbjct: 430 PLCEGHEEPCKTLQTKKKGSNQGRSFWMCARPLGPTGEKEKGTEWRCGTFIWA 482
>gi|237794818|ref|YP_002862370.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
gi|229261060|gb|ACQ52093.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
Length = 253
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 141/297 (47%), Gaps = 48/297 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ D Y S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQENQLEHNIKNIDSYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FA-----AKKGYSGVATYTKVK----------PISVKHSI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR +IT+ F L N+Y P D R+Q+KL F+ L + L+ +G+
Sbjct: 89 ------DSEGRILITEFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
+ Y+ W A + N G RID+ + L + + + N V + C I+++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPIMLELK 253
>gi|225685280|gb|EEH23564.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb03]
Length = 510
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 140/561 (24%), Positives = 206/561 (36%), Gaps = 130/561 (23%)
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
S + +DSEGRCVI + F+L VY P + D +R F+ F + + R L+
Sbjct: 18 LSNIDAATLDSEGRCVILEFPAFVLLGVYCPA--NRDEMRDGFRKAFVNAVDARVRNLVG 75
Query: 178 QGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS---- 223
G+R+ + GDLNI+ + ID A +F R F ++ SGG
Sbjct: 76 MGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPVRRIFNQLV--SGGKVIGD 133
Query: 224 ---------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 274
D+ R HP+RR YTCW A NYG+RID
Sbjct: 134 RDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSRID---------------- 177
Query: 275 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 334
+V C + I+ D+ + L GSDH PVY + + + S
Sbjct: 178 ---YVLCSL----IMRDW---------FCASNIQEGLMGSDHCPVYADIKD-----KVSL 216
Query: 335 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 394
+ L I+ V+ KRE + SG L E C R
Sbjct: 217 DDMEVHILDILN-PDGMFVNGERKREYSS-ANVLPLSGRLIPEF--------CQRRSIRD 266
Query: 395 LNNYCDSGILQGVYCSSSNQESEGEFTKT-IENCR---------DSANVASHSTITQGSS 444
+ ++ SS S+G+ + N R + + AS ST T
Sbjct: 267 M-----------LFRQSSKGASQGDVNSAGVTNPRVPQKDTLGTNISGPASPSTSTTPKR 315
Query: 445 NHISPFHVDRARKKAKKSQ---------LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVN 495
+ K+ K+SQ GQ SLK FF + + S D+ + S V+
Sbjct: 316 SQQGDDGTTSRSKRLKRSQSSAIATARTKGQKSLKGFFGLKGSGSTADDQT---NSPKVS 372
Query: 496 NSVTDTSLSQEEVPESHHHSNKIPV-TDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 554
+ V V + K P+ YSC + G Q E +
Sbjct: 373 DPVA--------VGNEQQEAAKSPLDITYSCPPGDGCGPEDDETQGQQQEAAEPLANGGD 424
Query: 555 RNNVALL--------EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 606
N+ ++ W RI + P C GH EPC++ V KK G GR F++CAR
Sbjct: 425 SNDDCIVHDPIANKESWSRI--FTKKPAPRCSGHHEPCISLVTKKAGINCGRSFWICARP 482
Query: 607 EGPA----SNPEANCGYFKWA 623
GP+ + + C F W+
Sbjct: 483 LGPSGVKKTGDQWRCDTFIWS 503
>gi|153937900|ref|YP_001390827.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|168180137|ref|ZP_02614801.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|170757676|ref|YP_001781117.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|226948816|ref|YP_002803907.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|384461879|ref|YP_005674474.1| exodeoxyribonuclease III [Clostridium botulinum F str. 230613]
gi|387817755|ref|YP_005678100.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
gi|421833792|ref|ZP_16268989.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001627]
gi|429247526|ref|ZP_19210769.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001628]
gi|152933796|gb|ABS39294.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|169122888|gb|ACA46724.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|182668909|gb|EDT80885.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|226843845|gb|ACO86511.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|295318896|gb|ADF99273.1| exodeoxyribonuclease III [Clostridium botulinum F str. 230613]
gi|322805797|emb|CBZ03362.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
gi|409744929|gb|EKN43319.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001627]
gi|428755480|gb|EKX78108.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001628]
Length = 253
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 142/297 (47%), Gaps = 48/297 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQGNQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FAV-----KKGYSGVATYTKVK----------PISVKHSI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR +IT+ F L N+Y P D R+Q+KL F+ L + L+ +G+
Sbjct: 89 ------DSEGRILITEFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
+ Y+ W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|310826147|ref|YP_003958504.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
gi|308737881|gb|ADO35541.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
Length = 254
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 133/297 (44%), Gaps = 48/297 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ ++NVNG+R V+Q G + +++ DI+C QE K ++ D+ GY SFF
Sbjct: 1 MKLYSWNVNGIRA-VAQKG-FTEWVEAAQPDILCLQEVKAAEDQISEDIRCIPGYHSFFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A + + + P S T TGL E
Sbjct: 59 AAE-----RKGYSGTAVYYK-EEPISIT------------TGLSED-------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ + EGR +I ++ F LFN+Y P +D R+QFK+ F+ K L+ QG+
Sbjct: 87 ----RFNHEGRTIIMEYPEFTLFNIYFPNGQKDDE-RLQFKMDFYDCFLKDVNALVAQGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD+N A +D + + ++ F R W E+G + D +R HP+
Sbjct: 142 KVIICGDVNTAHTEMDLKNPKSNAKRSGFLPMEREWLDHFF-ENG--YVDTYRHLHPDTV 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
E Y+ W A N G RID+ + + D H VT + C + I+ K
Sbjct: 199 E-YSWWSYRFNARANNAGWRIDYFFVSDNAIDMVKDAAIHTEVTGS-DHCPVSIEIK 253
>gi|148379451|ref|YP_001253992.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|153934303|ref|YP_001383830.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|153935156|ref|YP_001387380.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
gi|148288935|emb|CAL83022.1| putative exodeoxyribonuclease [Clostridium botulinum A str. ATCC
3502]
gi|152930347|gb|ABS35847.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|152931070|gb|ABS36569.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
Length = 253
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 141/297 (47%), Gaps = 48/297 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FAV-----KKGYSGVATYTKVK----------PISVKHSI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR +IT F L N+Y P D R+Q+KL F+ L + L+ +G+
Sbjct: 89 ------DSEGRILITGFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
+ Y+ W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|308274119|emb|CBX30718.1| Exodeoxyribonuclease [uncultured Desulfobacterium sp.]
Length = 263
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 127/269 (47%), Gaps = 50/269 (18%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
+K+V++NVNGLR + + FGS++++ + DI+ QETKL+ + ++ + Y S+
Sbjct: 7 IKLVSWNVNGLRAIIQKDFFGSIQRM----NPDIVAIQETKLQEHQRTDKMLSFEDYNSY 62
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
+S + + GYSGVATF R+ + + EG+ +
Sbjct: 63 WSYSTV----KKGYSGVATFTRI-------------------------APQNVKEGIGNP 93
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
DE EGR + TD G FI FNVY P D R+Q+KL F++ + L Q
Sbjct: 94 GYDE------EGRILETDFGDFIFFNVYFPNGQMGDD-RLQYKLNFYNDFFAYTDSLKNQ 146
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 234
G+ + + GD N A ID P+ + F R W ++ + D FR +PE
Sbjct: 147 GKNLIISGDYNTAHNEIDLTHPKPNEKYSGFLRVERDWMDEIIKR---GYVDTFRYFYPE 203
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ + Y+ W A + N G R+D+I +
Sbjct: 204 KVK-YSWWSYRANARKKNVGWRVDYIFVS 231
>gi|6319452|ref|NP_009534.1| DNA-(apurinic or apyrimidinic site) lyase APN2 [Saccharomyces
cerevisiae S288c]
gi|586406|sp|P38207.1|APN2_YEAST RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|536013|emb|CAA84838.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810316|tpg|DAA07101.1| TPA: DNA-(apurinic or apyrimidinic site) lyase APN2 [Saccharomyces
cerevisiae S288c]
gi|392301201|gb|EIW12290.1| Apn2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 520
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 168/434 (38%), Gaps = 103/434 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 205
F+L+F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 192 GEMFRLRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 206 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 241
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKAADILPD---------- 348
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 356
+ GSDH PVY L + P Q P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDILDDRIEPGTTQVPIPKFEARYKYNLR--NHNVLEMF 397
Query: 357 MKREVAKQGKSCKF 370
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|444315057|ref|XP_004178186.1| hypothetical protein TBLA_0A08780 [Tetrapisispora blattae CBS 6284]
gi|387511225|emb|CCH58667.1| hypothetical protein TBLA_0A08780 [Tetrapisispora blattae CBS 6284]
Length = 527
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 155/383 (40%), Gaps = 98/383 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ VT+NVNG+R S+F SL K+ FD DII FQE K + L DG
Sbjct: 17 IRCVTFNVNGIRTFFHFHPFSKFNQSLSKVFQLFDTDIITFQELKTDQTSLIR-WGQVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKI-- 111
Y SF S T + GY+GV + R+ P + V AEEG TG L K+
Sbjct: 76 YYSFISIPIT----KKGYAGVGCWIRIPPPEDPLYNLIKVVKAEEGITGYLTIRNGKLDC 131
Query: 112 --------------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
GL+D + E LK+DSEGRCV+ + + ++ +VY P ++
Sbjct: 132 RYRDCSDQGIGGYDSLGLKD--ETEALKLDSEGRCVLVELACNIVVVSVYCPANSTQTEE 189
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF------------ 204
F+L+F VL KR L G+++ ++GDLN+ ID + F
Sbjct: 190 GELFRLKFLSVLFKRIRNLDTLGKKVILMGDLNVCKDLIDHAEILDKFNIEITNDSQGSV 249
Query: 205 ------AKNEFRIWF-----RSML-----------VESGGSFFDVFRS-KHPERREAYTC 241
K IW R ML + G D R + +R + YT
Sbjct: 250 IERTYDEKVHDFIWAPDAPQRRMLNQILSDSLDSQLARTGILVDSTRVYQGRDRLKIYTV 309
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W + A NYG+RID++ + +Q + DIL
Sbjct: 310 WNTLKNARPINYGSRIDYVFISSKLKNQ-------------IKAADIL------------ 344
Query: 302 RWKGGMSTRLEGSDHAPVYMCLG 324
++ GSDH PVY +G
Sbjct: 345 -------PKVLGSDHCPVYADIG 360
>gi|51013817|gb|AAT93202.1| YBL019W [Saccharomyces cerevisiae]
Length = 520
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 168/434 (38%), Gaps = 103/434 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 205
F+L+F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 192 GEMFRLRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 206 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 241
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKAADILPD---------- 348
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 356
+ GSDH PVY L + P Q P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDILDDRIEPGTTQVPIPKFEARYKYNLR--NHNVLEMF 397
Query: 357 MKREVAKQGKSCKF 370
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|424827324|ref|ZP_18252133.1| exodeoxyribonuclease III [Clostridium sporogenes PA 3679]
gi|365980247|gb|EHN16283.1| exodeoxyribonuclease III [Clostridium sporogenes PA 3679]
Length = 253
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 48/297 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFLEWIGEENPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ + + P++ + G +
Sbjct: 59 FAH-----KKGYSGVATYTKEE----------PISVKHGIS------------------- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ + DSEGR +IT+ FIL N+Y P D R+Q+KL F+ L + L+ G+
Sbjct: 85 --IERFDSEGRILITEFKDFILLNIYFPNG-QRDEERLQYKLDFYAALFNYCDELVEAGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKASGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
+ Y+ W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|325960168|ref|YP_004291634.1| exodeoxyribonuclease iii Xth [Methanobacterium sp. AL-21]
gi|325331600|gb|ADZ10662.1| exodeoxyribonuclease III Xth [Methanobacterium sp. AL-21]
Length = 257
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 125/269 (46%), Gaps = 53/269 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
++I+++NVNG+R V + G LD F+ DI+C QETK R++ D+ DGY+
Sbjct: 4 IRILSWNVNGIRA-VHKKG----FLDWFNNEKPDILCIQETKAVRKQFPPDIRAVDGYQL 58
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+ S+ R GYSG AT+ +K P + GF G+E
Sbjct: 59 Y-----VSEASRKGYSGTATYTSLK----------PEGVKYGF-------------GVEK 90
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
F D+EGR +ITD+G F+LFN+Y P R+ +K++F+ + + L
Sbjct: 91 F--------DTEGRTLITDYGDFVLFNIYFPNGKMSKE-RLDYKMEFYDTFLEYADELKD 141
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
QG+ I V GD+N A ID + + F R W +L + D FR +
Sbjct: 142 QGKNIVVCGDVNTAHREIDLAHPKENSKISGFLPEERAWIDKLL---DHGYVDTFREFNQ 198
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILC 262
E E YT W T A + N G R+D+
Sbjct: 199 EPEE-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|408381604|ref|ZP_11179152.1| exodeoxyribonuclease III [Methanobacterium formicicum DSM 3637]
gi|407815535|gb|EKF86105.1| exodeoxyribonuclease III [Methanobacterium formicicum DSM 3637]
Length = 259
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 119/266 (44%), Gaps = 47/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNG+R V + G + L DI+C QETK ++ D+ D Y + S
Sbjct: 4 IRILSWNVNGIRA-VHRKG-FKDWLMGDKPDILCIQETKAHLKQFPKDIQNLDDYRLYLS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVAT+ R+K P E GF
Sbjct: 62 -----EAERKGYSGVATYTRLK----------PEKVENGFG------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ K DSEGR +ITD+G F+LFN+Y P R+Q+K+ F+ + L +GR
Sbjct: 88 --ISKFDSEGRTLITDYGDFVLFNIYFPNGKMSPE-RLQYKMNFYDSFLDYADALKEEGR 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I V GD+N A ID + + F R W L + D FR +PE
Sbjct: 145 NIVVCGDVNTAHNEIDLARPKENEKISGFLPEEREWLDRFL---SHGYVDTFRELNPE-P 200
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
E YT W T A + N G R+D+
Sbjct: 201 ENYTWWSYRTRARERNVGWRLDYFFV 226
>gi|151946376|gb|EDN64598.1| AP endonuclease [Saccharomyces cerevisiae YJM789]
gi|349576362|dbj|GAA21533.1| K7_Apn2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 520
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 169/434 (38%), Gaps = 103/434 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 205
F+++F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 206 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 241
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKAADILPD---------- 348
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 356
+ GSDH PVY L + P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDILDDRIEPGTTQVAIPKFEARYKYNLR--NHNVLEMF 397
Query: 357 MKREVAKQGKSCKF 370
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|218665721|ref|YP_002424683.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218517934|gb|ACK78520.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 253
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 136/325 (41%), Gaps = 75/325 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + LR+ + + AD +CFQE K L + DGY++ ++
Sbjct: 1 MRLYSWNVNGWRAACRK--GLREWVATVQADALCFQEIKADPDRLPATETALDGYDARWA 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVATF R +T + +P
Sbjct: 59 VAE-----RPGYSGVATFSRAPCRPLTTGLGIP--------------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ D EGR V+TD G F L+NVY P +DT R+ FKL F+ + + GR
Sbjct: 87 ----RFDREGRVVVTDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVAAGR 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ GD+N A AID + + F R+ L + + + D FR HP+ E Y
Sbjct: 142 AVVFCGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWVDSFRHLHPDAVE-Y 200
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
+ W T A N G R+D+ +H+
Sbjct: 201 SWWSQRTDARARNIGWRLDYFW-----IHESL---------------------------- 227
Query: 300 APRWKG-GMSTRLEGSDHAPVYMCL 323
PR +G G++T + GSDH PV++ L
Sbjct: 228 LPRLRGAGIATDVTGSDHCPVWLEL 252
>gi|415969502|ref|ZP_11558374.1| exodeoxyribonuclease III Xth [Acidithiobacillus sp. GGI-221]
gi|339833429|gb|EGQ61275.1| exodeoxyribonuclease III Xth [Acidithiobacillus sp. GGI-221]
Length = 257
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 136/325 (41%), Gaps = 75/325 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + LR+ + + AD +CFQE K L + DGY++
Sbjct: 5 MRLYSWNVNGWRAACRK--GLREWVATVQADALCFQEIKADPDRLPATETALDGYDA--- 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + R GYSGVATF R +T + +P
Sbjct: 60 --RWAVAERPGYSGVATFSRAPCRPLTTGLGIP--------------------------- 90
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ D EGR V+TD G F L+NVY P +DT R+ FKL F+ + + GR
Sbjct: 91 ----RFDREGRVVVTDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVAAGR 145
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ GD+N A AID + + F R+ L + + + D FR HP+ E Y
Sbjct: 146 AVVFCGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWVDSFRHLHPDAVE-Y 204
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
+ W T A N G R+D+ +H+
Sbjct: 205 SWWSQRTDARARNIGWRLDYFW-----IHESL---------------------------- 231
Query: 300 APRWKG-GMSTRLEGSDHAPVYMCL 323
PR +G G++T + GSDH PV++ L
Sbjct: 232 LPRLRGAGIATDVTGSDHCPVWLEL 256
>gi|198282493|ref|YP_002218814.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198247014|gb|ACH82607.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 255
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 136/325 (41%), Gaps = 75/325 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + LR+ + + AD +CFQE K L + DGY++ ++
Sbjct: 3 MRLYSWNVNGWRAACRK--GLREWVATVQADALCFQEIKADPDRLPATETALDGYDARWA 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVATF R +T + +P
Sbjct: 61 VAE-----RPGYSGVATFSRAPCRPLTTGLGIP--------------------------- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ D EGR V+TD G F L+NVY P +DT R+ FKL F+ + + GR
Sbjct: 89 ----RFDREGRVVVTDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVAAGR 143
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ GD+N A AID + + F R+ L + + + D FR HP+ E Y
Sbjct: 144 AVVFCGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWVDSFRHLHPDAVE-Y 202
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
+ W T A N G R+D+ +H+
Sbjct: 203 SWWSQRTDARARNIGWRLDYFW-----IHESL---------------------------- 229
Query: 300 APRWKG-GMSTRLEGSDHAPVYMCL 323
PR +G G++T + GSDH PV++ L
Sbjct: 230 LPRLRGAGIATDVTGSDHCPVWLEL 254
>gi|42524876|ref|NP_970256.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|39577087|emb|CAE78316.1| Exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 285
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 139/328 (42%), Gaps = 80/328 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNG+R L ++ DI C QETK +++++L S++S
Sbjct: 31 VKIISWNVNGIR--ACHKKGLLDFVNREKPDIFCIQETKAHIDQVENELKKLTWNHSYWS 88
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF + P + E G+ G+ ++
Sbjct: 89 SAV-----KKGYSGVATFVNEE----------PKSVEYGW-------------GISEY-- 118
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+SEGR +I+DHG F L+N+Y P S D VR FK QF L + L GR
Sbjct: 119 ------ESEGRIIISDHGPFDLYNIYFPNGGSGD-VRHNFKQQFLKDLNHHLKEKLATGR 171
Query: 181 RIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
++ VVGD N+A AID R F E R WF S V+ G F D FR P
Sbjct: 172 QVVVVGDYNVAHEAIDVHDPVRLSKVSGFFPEE-RAWFDS-FVDLG--FIDTFRYFKPSE 227
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
+ Y+ W A N G RID+I C L + ++ DIL
Sbjct: 228 AKRYSWWDYRQMARISNRGWRIDYI-CVSKGLEK------------YLASADIL------ 268
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
++EGSDH PV L
Sbjct: 269 -------------DQVEGSDHCPVVATL 283
>gi|426405404|ref|YP_007024375.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
gi|425862072|gb|AFY03108.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
Length = 271
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 139/328 (42%), Gaps = 80/328 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNG+R L +++ DI C QETK +++++L S++S
Sbjct: 17 VKIISWNVNGIR--ACHKKGLLDFVNTEKPDIFCIQETKAHIDQVENELKKLTWMHSYWS 74
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF + P + E G+ G+ ++
Sbjct: 75 SAV-----KKGYSGVATFVNEE----------PKSVEYGW-------------GISEYQ- 105
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
SEGR +++DHG F L+N+Y P S D VR FK QF L + L GR
Sbjct: 106 -------SEGRIIVSDHGPFDLYNIYFPNGGSGD-VRHNFKQQFLKDLNVHLKEKLATGR 157
Query: 181 RIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+I VVGD N+A AID R F E R WF S V+ G F D FR P
Sbjct: 158 QIVVVGDYNVAHEAIDVHDPVRLSKVSGFFPEE-RAWFDS-FVDLG--FIDTFRYFKPSE 213
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
+ Y+ W A N G RID+I C L + ++ DIL
Sbjct: 214 AKRYSWWDYRQMARISNRGWRIDYI-CISKGLEK------------YLASADIL------ 254
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
++EGSDH PV L
Sbjct: 255 -------------DQVEGSDHCPVVATL 269
>gi|330506670|ref|YP_004383098.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
gi|328927478|gb|AEB67280.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
Length = 257
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 122/267 (45%), Gaps = 47/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+++NVNGLR + + G + LL D++C QE K ++ +L GY SFFS
Sbjct: 4 MRILSWNVNGLRA-IYKKGFVDWLLKD-RPDVLCLQEIKATEDQIPKELKGLPGYISFFS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R G GVA F ++K+ + LP GF
Sbjct: 62 PG-----ARKGRDGVALFTKIKTLSLEYSLGLP-----GF-------------------- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D E R ++ D+G F+LF+VY P + R+ +K++F+ + + L+ +GR
Sbjct: 92 ------DDEQRAIVADYGDFLLFDVYFPNGKASKE-RLSYKMRFYDLFLDLMDRLVAEGR 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD+N A ID P+ + F R W L+E G F D FR HPE
Sbjct: 145 DIVICGDVNTAHKEIDLARPKPNEKISGFLPEERAWI-DRLIEHG--FLDTFRLFHPE-G 200
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
E Y+ W T A + N G RID+ +
Sbjct: 201 EKYSFWDMKTRARERNVGWRIDYFFVS 227
>gi|403216708|emb|CCK71204.1| hypothetical protein KNAG_0G01460 [Kazachstania naganishii CBS
8797]
Length = 526
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 157/382 (41%), Gaps = 100/382 (26%)
Query: 1 MKIVTYNVNGLRQRV------SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++I+T+NVNG+R SL K + F+ADII FQE K+ R+ + + L DG
Sbjct: 14 VRILTFNVNGVRTLFHYKPFHDWTPSLTKTFNYFNADIITFQELKVSRENIDAKLGCIDG 73
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVK------SPFSSTEVALPVAAEEGFTGLLETSG 108
+ SF S T + YSGV + R SPF + + AEEG +G L
Sbjct: 74 FHSFISIPST----KKSYSGVGVWVRKYPSGHPLSPFLTV-----LKAEEGISGYLPIKL 124
Query: 109 SK-------------IMEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSED 154
+K I ++ + + LK+DSEGRCV+ + + ++ +VY P +
Sbjct: 125 TKNCTVRYRDDPSIGIGGYVDTLEEADALKLDSEGRCVMIELACNTVVISVYCPANSTGT 184
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----- 209
F+ F +L +R + L G+R+ ++GDLN+ ID DA + +
Sbjct: 185 DEGELFRCHFLRMLFQRVKNLETMGKRVVLMGDLNVCRDLIDSADAIQELGLGSYKGGCE 244
Query: 210 --------------------RIWFRSMLVES-------GGSFFDVFR-SKHPERREAYTC 241
R + +L +S GG D R + +R + YT
Sbjct: 245 LEDKCAVQAQNFIMDHSKPHRRFLNQLLCDSIIPELAQGGLLLDSTRFIQKRDRLKMYTV 304
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W + N+G+RID IL + N + + + +IL D
Sbjct: 305 WNTQKNTRPMNFGSRIDFILVS-------------NKLQQSIRDSNILPD---------- 341
Query: 302 RWKGGMSTRLEGSDHAPVYMCL 323
++GSDH PVY L
Sbjct: 342 ---------VQGSDHCPVYTDL 354
>gi|256269259|gb|EEU04581.1| Apn2p [Saccharomyces cerevisiae JAY291]
gi|259144827|emb|CAY77766.1| Apn2p [Saccharomyces cerevisiae EC1118]
gi|365767051|gb|EHN08539.1| Apn2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 520
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 168/434 (38%), Gaps = 103/434 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIP----QNRKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 205
F+++F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 206 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 241
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 356
+ GSDH PVY L V P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTQVAIPKFEARYKYNLR--NHDVLEMF 397
Query: 357 MKREVAKQGKSCKF 370
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|410720602|ref|ZP_11359956.1| exodeoxyribonuclease III [Methanobacterium sp. Maddingley MBC34]
gi|410600729|gb|EKQ55254.1| exodeoxyribonuclease III [Methanobacterium sp. Maddingley MBC34]
Length = 259
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 117/266 (43%), Gaps = 47/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNG+R + + L DI+C QETK R++ D+ D Y + S
Sbjct: 4 IRILSWNVNGIR--AAHRKGFKDWLMKDKPDILCIQETKAHRKQFPKDIQNLDEYHLYLS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVAT+ ++K P E GF
Sbjct: 62 EAQ-----RKGYSGVATYTQLK----------PEKVENGFG------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ K DSEGR +ITD+G F+LFN+Y P R+Q+K+ F+ + L +GR
Sbjct: 88 --IPKFDSEGRTLITDYGDFVLFNIYFPNGKMSPE-RLQYKMDFYDSFLDYADALKEEGR 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I V GD+N A ID + + F R W L + D FR +P
Sbjct: 145 NIVVCGDVNTAHNEIDLARPKENEKISGFLPEEREWLDRFLSH---GYVDTFRELNPG-P 200
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
E YT W T A + N G R+D+
Sbjct: 201 ENYTWWSYRTRARERNVGWRLDYFFV 226
>gi|303288135|ref|XP_003063356.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455188|gb|EEH52492.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 573
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 147/362 (40%), Gaps = 98/362 (27%)
Query: 18 FGSLRKLLDSFD--AD---IICFQETKLR-------RQELKSDLVMADGYESFFSCTRTS 65
FGS LL S AD ++C QETKL R L + L DG++S + TR
Sbjct: 41 FGSAANLLASLGSRADNIRVVCLQETKLGGGGASEPRAALDARLACPDGWDSVHAVTRDP 100
Query: 66 DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL---LETSGSKIMEGL-EDFSKD 121
K GY+GVAT+ R + T V VAAE G TG+ E G + E F++
Sbjct: 101 KKA-AGYAGVATYWR----RADTAV---VAAEVGVTGVNADGERGGVGCYGAMRELFTRA 152
Query: 122 ELLKIDSEGRCVITDHGHFILFNVY------GPRADSEDTVRIQFKLQFFHVLQKRWEFL 175
++D+EGRCV+ D G F+L NVY G ++ D R FK F ++ R + L
Sbjct: 153 RAAELDAEGRCVLVDFGGFVLVNVYVPATTGGSGSEDVDIARDAFKRDFLLAVETRVDAL 212
Query: 176 LCQGRRIFVVGDLNIAPAAID----RCDAGPDFAK---------NEF------RIWFRSM 216
+ GRR+ GD N+A +D R G +K EF R W
Sbjct: 213 VDAGRRVVACGDWNVARGTMDAAAARTSTGTTGSKLGSSSAAREREFVRACPHRAWLDRQ 272
Query: 217 LVESGGS---------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
L G D R +P+ +A+TCW +GA+ NYG RID
Sbjct: 273 LQRDDGGGDDDDADGGGRRRPRLIDARR--YPKTSDAFTCWHVASGAQLTNYGARIDAFY 330
Query: 262 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 321
D +H V + G++ GSDHAPV++
Sbjct: 331 V---------DEATHARVH-----------------------RVGIAREHPGSDHAPVFL 358
Query: 322 CL 323
Sbjct: 359 AF 360
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEGPASNPEANCGYFK 621
W+RI M + P C+GH E C R VKK FGR FF C R G N +A+CG+F+
Sbjct: 511 WKRIHDRM--APPKCRGHGETCKVRSVKKKESANFGRTFFCCPRPAGARGNKDADCGFFQ 568
Query: 622 WAFSK 626
WA +
Sbjct: 569 WAAGR 573
>gi|298283547|gb|ADI72893.1| DNA lyase, partial [Ophiocordyceps unilateralis]
Length = 227
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 32/225 (14%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R Q + S + D + DI+ QE K++R++LK D+V+ DG+
Sbjct: 7 MRLTTWNVNGIRNPFSYQPWNTARSFSAMFDILETDIVVMQELKIQRKDLKDDMVLVDGW 66
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGSKIMEG 114
+ +FS K + GYSGV + R P+ AEEG G+L + SG+ +
Sbjct: 67 DCYFSLP----KHKKGYSGVGIYTR-------NATCAPIRAEEGLLGVLPSPSGTPYRDL 115
Query: 115 LED---------FSKDEL----LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
E+ EL +D+EGRCV+ + F+LF VY P + + +R F+
Sbjct: 116 PENESIGGYPTALQAAELGVDAAALDAEGRCVVIEFPAFVLFGVYSPA--NSNGLRDDFR 173
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK 206
F L R L+ QG+ + +VGDLN+ +D D K
Sbjct: 174 YGFICALDCRIRNLVKQGKNVVLVGDLNVTRHEMDSAPVPEDIRK 218
>gi|323356266|gb|EGA88070.1| Apn2p [Saccharomyces cerevisiae VL3]
Length = 520
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 168/434 (38%), Gaps = 103/434 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQX----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 205
F+++F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 206 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 241
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 356
+ GSDH PVY L V P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTQVAIPKFEARYKYNLR--NHDVLEMF 397
Query: 357 MKREVAKQGKSCKF 370
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|406912418|gb|EKD52031.1| hypothetical protein ACD_62C00127G0006 [uncultured bacterium]
Length = 289
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 129/275 (46%), Gaps = 26/275 (9%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNG+R + + D +ADI+C QETK+ +++ + +A Y S
Sbjct: 8 IKLSSWNVNGIRACIKK--GFWDWFDKTEADIVCLQETKITQKDFEK---IAAEYH-LIS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK---IMEGLED 117
T+++ + + +S S AL A + G++G+L S K + GL D
Sbjct: 62 IADTTNEQIVLFDNKPSSLVPRSS-SIVYYALATAKKAGYSGVLLLSKIKPRSVTIGLGD 120
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ D EGR ++ + F+ Y P SE RI +K+Q+ L ++ E L
Sbjct: 121 ------PRFDDEGRTIVAHYDDFVFVGCYFPNGGSE-LERIPYKMQYNEFLLQKLESLRE 173
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + I V GD+N+A ID + + F K E R WF L + DVFR K+
Sbjct: 174 EHKHIVVCGDMNVAHTEIDIKNPKANENNSGFTKTE-RDWFSQFL---SHKYVDVFRHKN 229
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
P+ R AYT W G Q N G RID+ + L
Sbjct: 230 PDARHAYTWWSYRPGVRQNNIGWRIDYFVVTEEML 264
>gi|367003866|ref|XP_003686666.1| hypothetical protein TPHA_0H00210 [Tetrapisispora phaffii CBS 4417]
gi|357524968|emb|CCE64232.1| hypothetical protein TPHA_0H00210 [Tetrapisispora phaffii CBS 4417]
Length = 534
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 162/403 (40%), Gaps = 101/403 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
+++VT+NVNG+R Q SQ SL + D F+ADII FQE K + + S DG
Sbjct: 22 IRLVTFNVNGIRTLFHYQPFSQMNQSLVNVFDYFNADIITFQELKTEKLSI-SKWGKVDG 80
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRV---KSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
Y SF S + GYSGV + R+ P + V AEEG TG L +
Sbjct: 81 YYSFISLPTV----KKGYSGVGCWVRMFPDDHPLHDSMKV--VKAEEGITGCLSVKNGQE 134
Query: 112 -----------MEGLEDFSKD---ELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ G D E L +DSEGRCVI + + ++ + Y P +
Sbjct: 135 EIRYKDDQNIGIGGYNSLGYDNESEALHLDSEGRCVIIELACNMVIISTYCPANSTLTDE 194
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA---------------- 200
QF+++F VL KR L G+++ ++GDLNI ID+ +A
Sbjct: 195 GQQFRIKFLKVLFKRIRNLESMGKKVVLMGDLNICRDLIDQAEALEVNGIRILPETTGNM 254
Query: 201 ----GPDFAKNEF-------RIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 241
PD A + R ++ +S G D R ++R + YT
Sbjct: 255 IENEYPDLASSFILKPERVQRRLLNQIITDSFIADLSKNGCMIDTTRFIQSKKRLKMYTV 314
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W + NYG+RID IL + ++ +Q+ N +
Sbjct: 315 WNTLKNTRSINYGSRIDFILLSS---GYQNLIQNANIL---------------------- 349
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH---STPSLASRY 341
++ GSDH PVY+ + +I + P +RY
Sbjct: 350 -------PQVMGSDHCPVYLDMKLPTDIASNIEIKIPRFEARY 385
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLCK H E CV + + +G++F+ C R +G ++N +++C +F+W
Sbjct: 488 PLCK-HGEKCVLKT-SRTSSNYGKKFWACKRPKGESNNEDSSCDHFEWV 534
>gi|323349886|gb|EGA84099.1| Apn2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 455
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 168/434 (38%), Gaps = 103/434 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIP----QNRKGYSGVGCWIRIXEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 205
F+++F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 206 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 241
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 356
+ GSDH PVY L V P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTQVAIPKFEARYKYNLRN--HDVLEMF 397
Query: 357 MKREVAKQGKSCKF 370
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
>gi|28211273|ref|NP_782217.1| exodeoxyribonuclease III [Clostridium tetani E88]
gi|28203713|gb|AAO36154.1| exodeoxyribonuclease III [Clostridium tetani E88]
Length = 260
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 130/280 (46%), Gaps = 47/280 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + K ++ D+ C QETK++ +L+ +L +GY+S+FS
Sbjct: 4 MRIFSWNVNGLRAIAKK--NFFKWVEEEKPDVFCLQETKIQDHQLEDNLKNIEGYKSYFS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ + + P + G G+E+F
Sbjct: 62 FAE-----KKGYSGVATYTKTE----------PKSVLNGI-------------GIEEF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +I++ F L N+Y P D R+ +KL+F+ + L+ +G+
Sbjct: 92 ------DNEGRVLISEFEEFTLLNIYFPNGQMNDE-RLDYKLRFYDAILDYCNDLVSKGK 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD N A ID + + + F R W + + DV+R+ +PE+
Sbjct: 145 KLIICGDYNTAHREIDLKNPKNNEKYSGFLPIEREWIDKFI---NNGYVDVYRNFYPEKV 201
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
E Y+ W A + N G RID+ + L D + H
Sbjct: 202 E-YSWWSYRFKARERNAGWRIDYFFVSDNVLPLIKDTKIH 240
>gi|363754355|ref|XP_003647393.1| hypothetical protein Ecym_6193 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891030|gb|AET40576.1| hypothetical protein Ecym_6193 [Eremothecium cymbalariae
DBVPG#7215]
Length = 460
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 162/380 (42%), Gaps = 96/380 (25%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R S + SL +L D DII FQE K+ R + ++ D
Sbjct: 14 VRFITFNVNGIRTLFSHYPFSRMNNSLSQLFKFLDGDIITFQELKIDRLTVSKWGIVDDA 73
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKS---PFSSTEVALPVAAEEGFTGLLET--SGS 109
Y SF T K + GYSGV + R++ P SS + V AEEG TGLL+ +G
Sbjct: 74 Y-SFI----TIPKVKRGYSGVGCWVRIREESDPLSS--LLKVVKAEEGITGLLKVKRNGE 126
Query: 110 KI---------MEGLEDFS-KDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRI 158
+ + G E+ D+ ++DS+GRCVI + ++ + Y P ++
Sbjct: 127 LVSYRDDPTIGIGGYENLPYSDDAEELDSQGRCVIIELACGIVVISTYCPANSTQTEEGE 186
Query: 159 QFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDR-------------CDAGPDFA 205
F+++F +L KR L QG+ + ++GD+N++ ID+ DAG +F
Sbjct: 187 VFRMKFLKLLFKRVRNLKEQGKEVVLMGDINVSRDLIDKAEALEQQRLIIRDADAGLEFE 246
Query: 206 K-----------NEFRI---WFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWP 243
K + RI ML +S G D R R + YT W
Sbjct: 247 KKYMNAVRGFIYDPLRITCRMLNEMLADSIIPEFARNGILIDSTRYIQGRNRLKMYTVWN 306
Query: 244 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 303
+ + NYG+R+D+I FVT + + NA W
Sbjct: 307 TIMNSRPVNYGSRLDYI-----------------FVTTALQS----------RIRNANIW 339
Query: 304 KGGMSTRLEGSDHAPVYMCL 323
M GSDH PV++ L
Sbjct: 340 PQIM-----GSDHCPVFLDL 354
>gi|207347830|gb|EDZ73883.1| YBL019Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 442
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 168/434 (38%), Gaps = 103/434 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIP----QNRKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 205
F+++F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 206 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 241
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 356
+ GSDH PVY L V P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTQVAIPKFEARYKYNLRN--HDVLEMF 397
Query: 357 MKREVAKQGKSCKF 370
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
>gi|149248308|ref|XP_001528541.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448495|gb|EDK42883.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 503
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 163/398 (40%), Gaps = 107/398 (26%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGS-LRKLLDSFDADIICFQETKLRRQELK--SDLVMA 52
++ +T+NVNG++ + +F + + +S +ADII QE KL Q + ++
Sbjct: 21 IRFITFNVNGVKTVFNYHPWNKFNNDFNAMFNSLEADIITLQELKLTEQTMGMLKNIGHL 80
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS--- 109
D + SF S T + GYSGV F R+ + E V AEEG TG L GS
Sbjct: 81 DDFRSFISLPST----KKGYSGVGLFVRIPRSSAQQECLTVVKAEEGITGWLCARGSDKS 136
Query: 110 ------KI------------MEGLEDFSKDELLKIDSEGRCV-ITDHGHFILFNVYGPRA 150
K+ + G D +K+E L++DS+GRCV I + ++F +Y P A
Sbjct: 137 YREVEGKVEGTQEEDGHDASIGGYTDITKEEGLELDSQGRCVAIELANNCVVFALYCP-A 195
Query: 151 DSEDTVRIQ-FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD-FAKN- 207
+S T + F+++F L R + L G+++ V+GD+N++ ID + D KN
Sbjct: 196 NSMGTDEGEAFRMKFLTHLLLRCQNLDRIGKKVVVMGDINVSLDLIDSAEGINDRLMKNL 255
Query: 208 ----------------------------------EFRIWFRSMLVES----GGSFFDVFR 229
F + S+L ES +D R
Sbjct: 256 ITDCRDGHTFEVQNYEECCGFKTSRLFRQLLNSYVFSSMWHSLLPESEKMNNQFLYDTTR 315
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 289
RR+ YT W + T + Q NYG+RID ILC SH V
Sbjct: 316 YIQGRRRKMYTVWNTLTSSRQINYGSRIDLILC-----------NSHEMVK--------- 355
Query: 290 IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 327
NA W + GSDH PV+ +P
Sbjct: 356 ------SISNADIWPFIL-----GSDHCPVFTDFDLLP 382
>gi|66356394|ref|XP_625375.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46226387|gb|EAK87392.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 500
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 115/461 (24%), Positives = 174/461 (37%), Gaps = 140/461 (30%)
Query: 1 MKIVTYNVNGL----RQRVSQFGSLRKLLDSF--------------DADIICFQETKLR- 41
+ I+++NVNGL ++R + KLLD+ DIIC QE K+
Sbjct: 4 LSIISFNVNGLISFTKRRGYTESNFSKLLDNICVNDEVTSANLNVKSPDIICLQECKMSF 63
Query: 42 RQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFT 101
+L + + YES+FS + + YSGVAT+C K+ + + A +GF+
Sbjct: 64 GDDLNNSIGCPGNYESYFSLAENNKR----YSGVATYCSKKT--------MVIEAAKGFS 111
Query: 102 GLLET----------SGSKIMEGLEDFSKDE------LLKIDSEGRCVITDHGHFILFNV 145
L K+ E D SK + + +ID EGRCVITDH F+L N+
Sbjct: 112 WLESNPCQFDINQMIQTEKLQEIESDISKIKDKYGISISEIDGEGRCVITDHKQFVLLNL 171
Query: 146 YGP----------------------------RADSEDTV---RIQFKLQFFHVLQKRWEF 174
Y P R + +TV R +++L F L
Sbjct: 172 YVPLLRSKAEEKEEKEKEEVMLKEIQNQNETRIELSETVDPERFKYRLAFQEYLNLLLHV 231
Query: 175 L--LCQGRRIFVVGDLNIAPAAI---------DRCDAGP-------------DFAKNEFR 210
L C+ R + + GD NI I D C P FAK
Sbjct: 232 LKNACK-RNVILAGDFNIILEKIDCYDDCGILDNCKLAPCMLTSPKEIFETSSFAKAYMH 290
Query: 211 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+ ++ + G D +R +P YTCW + N GTRID L + + +
Sbjct: 291 MRRMNIEMIKGYCLVDAYRHYYPRTNNKYTCWSQMNQSRIRNQGTRIDLFLISKGLISES 350
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL--GEVPE 328
+C+IL + GSDH P+ + L GE
Sbjct: 351 I-------------KCEIL-------------------DHIYGSDHCPILLILKTGEFES 378
Query: 329 I---PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGK 366
+ + PS+ S+YLP + Q T+ L +V +G+
Sbjct: 379 LYNNEKRKPPSICSKYLPQCKQRQSTISQFLTLSKVEVKGQ 419
>gi|323310178|gb|EGA63370.1| Apn2p [Saccharomyces cerevisiae FostersO]
Length = 442
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 168/434 (38%), Gaps = 103/434 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 205
F+++F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 206 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 241
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 302 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 356
+ GSDH PVY L V P + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTXVAIPKFEARYKYNLR--NHDVLEMF 397
Query: 357 MKREVAKQGKSCKF 370
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
>gi|255719916|ref|XP_002556238.1| KLTH0H08250p [Lachancea thermotolerans]
gi|238942204|emb|CAR30376.1| KLTH0H08250p [Lachancea thermotolerans CBS 6340]
Length = 512
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 154/379 (40%), Gaps = 98/379 (25%)
Query: 1 MKIVTYNVNGLRQRV------SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R S SL ++ + F +DII FQE K L S DG
Sbjct: 12 VRFLTFNVNGIRTLFHYHPFSSMNSSLSRVFEYFQSDIITFQELKTDTLSL-SKWGKVDG 70
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKIME 113
+ SF S R GY+GV + R+ P S AL V AEEG TG L+ K
Sbjct: 71 FHSFISLPLK----RKGYAGVGCWVRIPKPGDSMFSALQVTKAEEGITGYLQVRVGKTAT 126
Query: 114 ----------------GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
G+ED + + L IDSEGRCV+ + + ++ + Y P S
Sbjct: 127 KYRDNQAVGIGGYEALGIED--EADALSIDSEGRCVMVELKCNMVVISTYCPANSSLTDE 184
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD------------- 203
+ +++F VL +R L G+R+ ++GD+N+ ID +A +
Sbjct: 185 GEEMRIRFLKVLFRRIRNLQALGKRVVLMGDINVCRDLIDHAEALKETHIFVTDLTKGTQ 244
Query: 204 -------FAKNEF-------RIWFRSMLVES-------GGSFFDVFRS-KHPERREAYTC 241
F K+ R ML +S GS D R + +R + YT
Sbjct: 245 VEQTYSAFVKDFIFAPSRPARRLLNEMLADSVLKPFAESGSLIDTTRYIQGRDRMKMYTV 304
Query: 242 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 301
W + + NYG+RID+IL K+DL+
Sbjct: 305 WNTLRNSRPVNYGSRIDYILATAGL---KNDLK--------------------------- 334
Query: 302 RWKGGMSTRLEGSDHAPVY 320
K + ++ GSDH PV+
Sbjct: 335 --KADIWPKIMGSDHCPVF 351
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 575 PLCKGHKEPCVARVVK-KPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
PLCK H E + R K K P G++F+ CAR G +N EA+C +F+W
Sbjct: 466 PLCK-HNENAILRTSKTKNNP--GKKFWACARPTGDENNKEASCSFFQW 511
>gi|408419182|ref|YP_006760596.1| exodeoxyribonuclease ExoA [Desulfobacula toluolica Tol2]
gi|405106395|emb|CCK79892.1| ExoA: exodeoxyribonuclease [Desulfobacula toluolica Tol2]
Length = 263
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 46/273 (16%)
Query: 1 MKIVTYNVNGLRQRVS-QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
+KI+++NVNGLR + +F S + D DI+ QETKL+ + +++ + YESF+
Sbjct: 7 LKIISWNVNGLRAVMKKEFASS---ICELDPDILLLQETKLQENQRTDEMIRLNSYESFW 63
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + + GYSGVA + +++ T + P
Sbjct: 64 SYSTV----KKGYSGVAAYSKIEPEQVITSFSRP-------------------------- 93
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
+ D+EGR + D+ FILFN+Y P D R+++KL F+ L QG
Sbjct: 94 -----EFDNEGRVIQLDYKKFILFNIYFPNGQMSDE-RLEYKLAFYDWFLDYANQLKDQG 147
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERR 236
+ + + GD N A ID + GP+ ++ F R +L V+ G + D +R +PE+
Sbjct: 148 KSLIITGDFNTAHNEIDLKNPGPNSKRSGFLRIERDVLDHMVDMG--YVDTYRYFYPEKV 205
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 269
+ Y+ W A + N G RID+ + +
Sbjct: 206 K-YSWWSYRFNARKNNAGWRIDYFFVTKDLIDK 237
>gi|241949837|ref|XP_002417641.1| DNA repair (apurinic or apyrimidinic site) lyase 2, putative;
apurinic-apyrimidinic endonuclease 2, putative [Candida
dubliniensis CD36]
gi|223640979|emb|CAX45326.1| DNA repair (apurinic or apyrimidinic site) lyase 2, putative
[Candida dubliniensis CD36]
Length = 422
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 155/384 (40%), Gaps = 100/384 (26%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGS-LRKLLDSFDADIICFQETKLRRQELK--SDLVMA 52
++ VT+NVNG++ + QF L +S ADII QE KL L+ S LV
Sbjct: 25 IRYVTFNVNGVKTIFNYHPWNQFNKDFNALFNSLQADIITLQELKLTETSLQQTSQLVHL 84
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA---LPVAAEEGFTGLLETSG- 108
++SF S T + GYSGV F R P E + AEEG TG L +S
Sbjct: 85 SDFKSFISIPVT----KKGYSGVGLFIRNPKPNDKNENGKHLTVIKAEEGITGWLSSSSK 140
Query: 109 SKI--------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ 159
+KI + G D + L +DSEGRCV + + ++F VY P A+S+ T +
Sbjct: 141 NKIPYRESTDNIGGYTDIEELPGLHLDSEGRCVCVELADNTVIFAVYCP-ANSQCTYEGE 199
Query: 160 -FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNE 208
F+L F +L +R L+ ++I ++GD+NIA ID + P F +
Sbjct: 200 LFRLTFMKLLLQRCSNLIKMKKKIVIMGDINIAIDMIDHAETIELGIKENLLKPTFRGHN 259
Query: 209 FRIW----------------------FRSMLV----------ESGGSFFDVFRSKHPERR 236
F + RSM E +D R R
Sbjct: 260 FEVLNYENCVQFRSATEARKLLNKYVIRSMWQDLKDERNNDNEEEPFLYDTTRLVQGRRM 319
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+ YT W + T A Q N+G+RID IL + + Q +
Sbjct: 320 KMYTVWNTLTNARQVNHGSRIDLILFSDLKMVQ--------------------------R 353
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVY 320
NA W M GSDH PV+
Sbjct: 354 ISNADIWPFLM-----GSDHCPVF 372
>gi|374339472|ref|YP_005096208.1| exodeoxyribonuclease III [Marinitoga piezophila KA3]
gi|372101006|gb|AEX84910.1| exodeoxyribonuclease III [Marinitoga piezophila KA3]
Length = 254
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 126/269 (46%), Gaps = 51/269 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R + + LD + DI+C QETK R ++L + ++ +F
Sbjct: 1 MKILSWNVNGIRAAIKK--GFLDFLDKENPDILCVQETKAREEQLTKKFLTYGDWKKYFV 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF ++K +++GL
Sbjct: 59 SAE-----KKGYSGVATFTKIKP-------------------------KNVLKGL----G 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+E+ DSEGR +IT++ +F LFN+Y P + + R+Q+K+ F++ L + E +
Sbjct: 85 NEMF--DSEGRTLITEYDNFSLFNIYFPNGKAREE-RLQYKMDFYYYLLEFLEDYKKKQP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR--SKHPE 234
I + GD+N A ID + + F R W +L ESG F D FR +K P
Sbjct: 142 NIIICGDVNTAHKEIDLARPKENENTSGFLPIEREWIDKLL-ESG--FVDTFRMFNKEPG 198
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCA 263
YT W T A + N G RID+ +
Sbjct: 199 N---YTWWDYKTRARERNVGWRIDYFFVS 224
>gi|339482626|ref|YP_004694412.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. Is79A3]
gi|338804771|gb|AEJ01013.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. Is79A3]
Length = 257
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 127/277 (45%), Gaps = 53/277 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T N+NG+R + + L ADI+C QE K + +L D++ D Y +F
Sbjct: 1 MQIITLNLNGVRAAAKK--GFFEWLAVQSADIVCVQELKAQLPDLSGDMLSPDSYHGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV +CR K P ++EG+
Sbjct: 59 CAT-----QKGYSGVGIYCR-KQP------------------------DNVIEGIG---- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ---FKLQFFHVLQKRWEFLLC 177
+ +ID+EGR + D G+ + ++Y P S + +I F +FF VL+ L+
Sbjct: 85 --IPEIDAEGRFIQADFGNLSIISLYLPSGSSGEHRQIAKFFFMEKFFPVLKT----LMA 138
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
GR I + GD NIA ID + + + F R+W ++L + G F DVFR +P
Sbjct: 139 SGREIILCGDWNIAHKEIDLKNWRSNQKNSGFLPEERMWLSNVLDDVG--FVDVFRQLNP 196
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
E + YT W + A N G RID+ A P + QK
Sbjct: 197 E-PDQYTWWSNRGQAWTKNVGWRIDY-QVATPVIAQK 231
>gi|302336916|ref|YP_003802122.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
gi|301634101|gb|ADK79528.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
Length = 259
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 118/264 (44%), Gaps = 50/264 (18%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
+I ++NVNG+R +Q L + + AD++C QETK + ++L L+ Y S+FS
Sbjct: 8 RIASWNVNGIR--AAQKKGLLEYMMQEHADVVCLQETKAKPEQLDEQLLNPSDYRSYFSS 65
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
R GYSGVA + R K P S + + G+ +F
Sbjct: 66 AE-----RGGYSGVAVYSR-KKPLSVSPL-----------------------GIAEF--- 93
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 181
D+EGR ++ + F+L N Y P + SE R+ +KL + + KR L+ +GR
Sbjct: 94 -----DAEGRALLVEFSDFVLINGYFPNSQSEGA-RLDYKLAYCDAILKRCNSLVGEGRH 147
Query: 182 IFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
+ V GD NIA ID + P F E R W S L + D FR + E
Sbjct: 148 VVVCGDYNIAHKPIDLARPKENEGNPGFLPEE-RAWMSSFL---DAGYTDTFRIFNNEGG 203
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHI 260
YT W T + N G R+D+
Sbjct: 204 N-YTWWSYRTKGRERNVGWRLDYF 226
>gi|344228427|gb|EGV60313.1| hypothetical protein CANTEDRAFT_127448 [Candida tenuis ATCC 10573]
Length = 556
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 137/329 (41%), Gaps = 70/329 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKS-DLVMAD 53
++ V++N+NG++ + F + K+ S DII QE KL L S +L
Sbjct: 26 IRFVSFNINGVKTLGNYFPWNKLNNNFDKIFQSLKGDIISLQELKLSSGNLSSTNLCNLR 85
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP---VAAEEGFTGLLETS--- 107
Y+SF S K + GYSGV F R+ +V V AEEG TG L +
Sbjct: 86 KYKSFISLP----KLKKGYSGVGLFVRIPEESEDDKVKYNLNVVKAEEGITGYLRINNDT 141
Query: 108 ----------------GSKIMEGLEDFSKDELLKIDSEGRCVITDHGH-FILFNVYGPRA 150
G E E+F ++ L+ID EGR V+ + ++F++Y P
Sbjct: 142 GHHTKFLDLDDNEAIGGYVTNENYEEFDEELALQIDREGRAVVVELASGLVIFSLYCPAN 201
Query: 151 DSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA---------- 200
+ + K +F +L KR + L+ G++I V+GD+NI+ ID+ D
Sbjct: 202 SMQTEEGERLKNKFMELLIKRCQNLIKLGKQIMVLGDINISLDLIDQADGINERLNKKLI 261
Query: 201 -----GPDFAKNEF-------RIWFRSM-----------LVESGGS---FFDVFRSKHPE 234
G F K R F M + E GS +D R
Sbjct: 262 KYSNDGEAFEKTNHKECVKFKRERFSRMHLSKFVFSPLNVPEITGSERFLYDTTRVFRGR 321
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCA 263
E YTCW + G+ Q N+G+RID IL
Sbjct: 322 TMEIYTCWNTLNGSRQTNFGSRIDLILTT 350
>gi|167762826|ref|ZP_02434953.1| hypothetical protein BACSTE_01184 [Bacteroides stercoris ATCC
43183]
gi|167699166|gb|EDS15745.1| exodeoxyribonuclease III [Bacteroides stercoris ATCC 43183]
Length = 266
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 131/298 (43%), Gaps = 54/298 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L D++C QETKL+ ++ ++ + A GY +
Sbjct: 13 MKIITYNVNGLRAAVSK--GLPEWLAKEQPDVLCLQETKLQPEQYPAEALDALGYRHYLH 70
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 71 SAR-----KKGYSGVAILTKRE----------PDYVEYGM-------------GMEEY-- 100
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR V D+G + +VY P S D R FK+++ ++ LL
Sbjct: 101 ------DSEGRFVRADYGDLSVVSVYHPSGTSGDE-RQAFKMEWLEHFRRYAVELLRTRP 153
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI AID D + + F R W L E F D FR HP+ R
Sbjct: 154 KLVLCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFLNE---GFIDTFRLLHPDSR 210
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAG---PCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W + N G RID+ + + P L + L H + C ++++
Sbjct: 211 E-YTWWSYRFNSRAKNKGWRIDYCMASEAVRPMLKEARILND----AVHSDHCPMMLE 263
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 141/327 (43%), Gaps = 81/327 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ G + DAD+ C QETK+ QE + L + D S+++
Sbjct: 1 MKLVSWNVNGLRACVNK-GCFTDYFEQIDADVFCVQETKM--QEGQLSLELGDNIHSYWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ P++ G +
Sbjct: 58 YAL-----KKGYSGTAVFSKIE----------PISVRYGL------------------EE 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DE ++EGR + + F L NVY P A D R+ ++L++ +K + L + +
Sbjct: 85 DE----EAEGRILTLEFASFYLVNVYTPNA-KRDLSRLPYRLEWEDRFRK-YIVQLDEKK 138
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GDLN+A ID +A + + F R F +L G F D FR +P+R
Sbjct: 139 PVIICGDLNVAHQEIDIKNAKSNVGNSGFTHEERGKFNELL---GAGFLDSFRELYPDRT 195
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+AYT W + N G RID+ L + + H+ E
Sbjct: 196 DAYTWWSFMPKVRERNIGWRIDYFLISEK-------------LRPHLKE----------- 231
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL 323
G+ + + GSDH PVY+ L
Sbjct: 232 --------AGIDSHIMGSDHCPVYVEL 250
>gi|255728113|ref|XP_002548982.1| hypothetical protein CTRG_03279 [Candida tropicalis MYA-3404]
gi|240133298|gb|EER32854.1| hypothetical protein CTRG_03279 [Candida tropicalis MYA-3404]
Length = 481
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 159/360 (44%), Gaps = 77/360 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-------LLDSFDADIICFQETKLRR---QELKSDLV 50
++ VT+NVNG++ + + K L +S ADII QE KL Q+ K+
Sbjct: 24 IRYVTFNVNGIKT-IFNYHPWNKFKQDYNALFNSLHADIITLQELKLSESTIQQAKNIAH 82
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-ETSGS 109
+AD Y+SF S T + GYSGV F R S + + V AEEG TG L +GS
Sbjct: 83 LAD-YKSFISLPAT----KKGYSGVGLFIRNPSDGKNAKHLTVVKAEEGITGWLCSRNGS 137
Query: 110 KI--------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ- 159
+ + G DF K +DSEGRCV+ + + ++F VY P A+S+ T +
Sbjct: 138 NVPYRELNDNIGGYTDFDKQSGQFLDSEGRCVVVELADNTVVFGVYCP-ANSQRTYEGEL 196
Query: 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAID---------------RCDAGPDF 204
F+L F +L +R L G+++ V+GD+NI ID R +G F
Sbjct: 197 FRLTFMKLLLERCRNLKNMGKKVVVMGDININLDLIDNAEGIELGVKDNSIRRASSGHTF 256
Query: 205 ------------AKNEFRIW-----FRSMLV-------------ESGGSFFDVFRSKHPE 234
+ ++ RI +RSM E +D R
Sbjct: 257 ECMNYAECVKFKSSSDARILLNKYVYRSMWQDLSIDGKEENKDDEQKQFLYDTTRFIQGR 316
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV--NECDILIDY 292
R + YT W + T + + NYG+RID IL + + + ++ + C + + C + DY
Sbjct: 317 RMKMYTVWNTLTNSREINYGSRIDLILFSDESMVK--NISQADIWPCILGSDHCPVFTDY 374
>gi|435851875|ref|YP_007313461.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
gi|433662505|gb|AGB49931.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
Length = 252
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 119/267 (44%), Gaps = 51/267 (19%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR + ++ + DI+C QETK + ++L S L DGY+++FS
Sbjct: 1 MLSWNVNGLRAAYKK--GFMEIFTAHGPDILCLQETKAQEEQLPSALRHVDGYKAYFSSA 58
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
+ GYSGV + + + L V E G
Sbjct: 59 E-----KKGYSGVGLYTK--------QEPLEVRYELGKA--------------------- 84
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 182
K D+EGR + +D G FILFNVY P + R+ FK++F+ + L QG++I
Sbjct: 85 --KFDTEGRVIASDFGDFILFNVYFPNGKASKE-RLDFKMEFYDAFLDHLDALKAQGKKI 141
Query: 183 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR--SKHPERR 236
+ GD+N A ID + + F R W L++ G + D R S P +
Sbjct: 142 IICGDVNTAHKEIDLARPKENEKVSGFLPLERAWI-GKLIDHG--YLDTLRMFSDQPGQ- 197
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
YT W T A + N G RID+ +
Sbjct: 198 --YTWWDMKTKARERNVGWRIDYFFAS 222
>gi|402695438|gb|AFQ90567.1| APN2, partial [Hymenoscyphus pseudoalbidus]
gi|402695442|gb|AFQ90570.1| APN2, partial [Hymenoscyphus pseudoalbidus]
Length = 456
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 112/295 (37%), Gaps = 79/295 (26%)
Query: 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGL 115
YSGVA + R P+ AEEG TG+L G L
Sbjct: 1 YSGVAIYTR-------NSACAPIRAEEGITGILTPPNSSTSFCSLPEDQRIGGYPTAAQL 53
Query: 116 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 175
+FS D +DSEGRCVI + +L VY P + D R +F++ F + L R L
Sbjct: 54 SNFSLDAA-ALDSEGRCVILEFPALVLIGVYCPA--NRDESREEFRIGFLNALDARVRNL 110
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLV------- 218
+ G+R+F+ GDLNI +D G ++ +LV
Sbjct: 111 VAMGKRVFLTGDLNIIREKMDTAYGEEQLKKHGMTGEEYLSTPAMRMLNQLLVGGRVIGQ 170
Query: 219 ----ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 274
E +D+ R+ HP R +TCW + A N+G+RID++LC+ C + D
Sbjct: 171 KDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRIDYVLCSLDCYNWFRD-- 228
Query: 275 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 329
+ L GSDH PVY E EI
Sbjct: 229 ------------------------------SNIQEGLMGSDHCPVYAVFKEKVEI 253
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 135/329 (41%), Gaps = 77/329 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ + DADI C QETKL+ ++ D Y +
Sbjct: 1 MKLVSWNVNGLRACVNK--GFSEYFAQTDADIFCVQETKLQEGQIALD------YPDYHQ 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F +VK P S + GLE+ S
Sbjct: 53 YWNYAEK--KGYSGTAVFTKVK-PLS------------------------VRYGLEEDS- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ EGR + + F L VY P A D R+ ++L++ +R+ L +
Sbjct: 85 ------EPEGRIITLEFDGFYLVTVYTPNA-KRDLSRLDYRLEWEDRF-RRYIAGLDAVK 136
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID +A + + F R + + G F D FR +PE+ +AY
Sbjct: 137 PVILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFYPEQTDAY 196
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
T W + + N G RID+ L + D Q H V
Sbjct: 197 TWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------------------- 237
Query: 300 APRWKGGMSTRLEGSDHAPVYMCLGEVPE 328
GSDH PV + L EVP+
Sbjct: 238 -------------GSDHCPVVLTLAEVPQ 253
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 135/329 (41%), Gaps = 77/329 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ + DADI C QETKL+ ++ D Y +
Sbjct: 1 MKLVSWNVNGLRACVNK--GFSEYFAQTDADIFCVQETKLQEGQIALD------YPDYHQ 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F +VK P S + GLE+ S
Sbjct: 53 YWNYAEK--KGYSGTAVFTKVK-PLS------------------------VRYGLEEDS- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ EGR + + F L VY P A D R+ ++L++ +R+ L +
Sbjct: 85 ------EPEGRIITLEFDGFYLVTVYTPNA-KRDLSRLDYRLEWEDRF-RRYIAGLDAVK 136
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID +A + + F R + + G F D FR +PE+ +AY
Sbjct: 137 PVILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFYPEQTDAY 196
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
T W + + N G RID+ L + D Q H V
Sbjct: 197 TWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------------------- 237
Query: 300 APRWKGGMSTRLEGSDHAPVYMCLGEVPE 328
GSDH PV + L EVP+
Sbjct: 238 -------------GSDHCPVVLTLAEVPQ 253
>gi|147920374|ref|YP_685852.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
gi|110621248|emb|CAJ36526.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
Length = 257
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 47/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNGLR + + + + DI+C QET+ ++L +++ + GY +F+
Sbjct: 4 LEILSWNVNGLRAILKK--GFVDFMQEKNPDILCLQETRASEEQLPPEIMTSWGYHVYFA 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA +VK P++ GF G+ +F
Sbjct: 62 SGE-----KKGYSGVAILSKVK----------PLSVARGF-------------GIPEF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR +I D+G F+L N+Y P + R+ +K++F++ + + L QGR
Sbjct: 92 ------DREGRVLIADYGAFVLLNIYFPNGKASPE-RLAYKMRFYNAFLEYADRLKAQGR 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+I V GD+N A ID + + F R W ++ + D FR + +
Sbjct: 145 KIVVCGDVNTAHKEIDIARPRENSKISGFLPVERAWMDKLIAH---GYVDTFRLFNDQPG 201
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ YT W + T A + N G RID+ +
Sbjct: 202 Q-YTFWDTVTRARERNVGWRIDYFFVS 227
>gi|119953317|ref|YP_945526.1| exodeoxyribonuclease III [Borrelia turicatae 91E135]
gi|119862088|gb|AAX17856.1| exodeoxyribonuclease III [Borrelia turicatae 91E135]
Length = 252
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 120/267 (44%), Gaps = 50/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
M ++++NVNG+R + FG + ++ ++ D++C QETK +++L +L+ +GY S+F
Sbjct: 1 MNLISWNVNGIR---AIFGKGFLEFIEKYNPDVLCLQETKAFKEQLPKELINIEGYYSYF 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + GYSGV + +VK P+ E +E F
Sbjct: 58 SKSIIK-----GYSGVGLYSKVK----------PIKLEN--------------MNMEIF- 87
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D EGRC+I + FIL N Y P + S R+ +KL+F L+ + G
Sbjct: 88 -------DREGRCLIAHYRDFILINAYFPNSQSLRK-RLPYKLEFLMSLESIANMFVTSG 139
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPER 235
+ I + GD NIA ID + F I W + L G + D FR + +
Sbjct: 140 KNIVICGDFNIAHTEIDLANPKTSRESAGFYIEETTWMDNFL---NGGYVDTFRMFNMDP 196
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILC 262
YT W T A + N G RID+ +
Sbjct: 197 GN-YTWWDYKTRARERNIGWRIDYFIV 222
>gi|406905854|gb|EKD47195.1| hypothetical protein ACD_66C00177G0002 [uncultured bacterium]
Length = 261
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 126/267 (47%), Gaps = 53/267 (19%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
+V++NVNG+R V + G L L+ DI+C QE K + +L +++ DGY ++
Sbjct: 8 LVSWNVNGIRS-VMKKGFL-DWLNKAKPDIVCLQEIKAKPGQLTDEILHPDGYTGIWNSA 65
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
R GYSGVAT + K P+ F G KI+
Sbjct: 66 -----DRKGYSGVATLVKGK----------PLMQISNF-------GEKIL---------- 93
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ--GR 180
D EGR ++T+H F LFNVY P + D R+ +K++F+ KR+ LL + G+
Sbjct: 94 ----DEEGRIILTEHKDFYLFNVYFPNG-ARDAGRLDYKIKFY----KRFYELLDEYAGK 144
Query: 181 R-IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 235
+ + + GD N A ID + ++ F R W + E G + D FR K+P++
Sbjct: 145 KPVMICGDFNTAHHEIDIARPKANETRSGFLPMERKWLDKL--EDKG-YIDTFRFKYPKK 201
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILC 262
R+ Y+ W T A + N G RID+
Sbjct: 202 RDIYSWWDVITHARERNVGWRIDYFWA 228
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 118/268 (44%), Gaps = 56/268 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR + + ++ FDAD C QETK++ + DL GY +FS
Sbjct: 1 MKFVSWNVNGLRAVLKK--GFEDIVKEFDADFFCIQETKMQEGQADVDL---PGYHQYFS 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ F G
Sbjct: 56 YAE-----KKGYSGTAIFTKHE----------PLSVTYNFEGH----------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR V+ ++ F L NVY P A E R+++++Q+ L+ L + +
Sbjct: 84 ------DDEGRAVLLEYDKFYLLNVYVPNAQPE-LKRLEYRMQWEDDLRAMLS-ELAKKK 135
Query: 181 RIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPE 234
+ + GDLN+A ID + P F+ E R+ + E G F D FR +PE
Sbjct: 136 HVVMCGDLNVAHEEIDLKNPKTNRGNPGFSDEE-----RAKMTELLGAGFTDTFRHLYPE 190
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILC 262
+ AY+ W A + N G RID+ +
Sbjct: 191 QEGAYSWWSYRGNARKNNTGWRIDYFVV 218
>gi|269119015|ref|YP_003307192.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
gi|268612893|gb|ACZ07261.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
Length = 255
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 146/326 (44%), Gaps = 82/326 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNG+R ++ G KL + + +I+C QETK + ++L +L+ +GY SFF
Sbjct: 1 MRIYSWNVNGIRALYNK-GEFFKLFEE-EPEIVCIQETKAQAEQLSEELLNINGYSSFFE 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++DK GYSGVA + + K P+ + K
Sbjct: 59 ---SADK--KGYSGVAVYSKKK----------PLMVK----------------------K 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ + DSEGR + ++ FIL N Y P + E R+ +K+ F + E G+
Sbjct: 82 FDIERFDSEGRYIELEYEDFILINCYFPNS-QEKGKRLDYKIDFCDEILNYLEERKKSGK 140
Query: 181 RIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NIA ID + P + E R W + +E+G + D FR +PE
Sbjct: 141 AVIITGDYNIAHKPIDLARPKDNEENPGYLPEE-REWM-TKFIEAG--YVDSFRKFYPEE 196
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
+ YT W T A + N G RID+ C++++ + ILID
Sbjct: 197 VK-YTWWSYRTRAREKNIGWRIDYF-----CINKESE--------------GILID---- 232
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYM 321
G+ + GSDH P+Y+
Sbjct: 233 ---------SGIRNDVFGSDHCPIYI 249
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + RI ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRISWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|45198534|ref|NP_985563.1| AFR016Wp [Ashbya gossypii ATCC 10895]
gi|44984485|gb|AAS53387.1| AFR016Wp [Ashbya gossypii ATCC 10895]
gi|374108792|gb|AEY97698.1| FAFR016Wp [Ashbya gossypii FDAG1]
Length = 558
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 141/321 (43%), Gaps = 64/321 (19%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ VT+NVNGLR + SL ++ + F +D+I FQE K + + M DG
Sbjct: 42 LRFVTFNVNGLRTLFGHYPFSRMSNSLAQVFEYFKSDVITFQELKTDKLAIPR-WGMVDG 100
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV-AAEEGFTGLLE-------- 105
Y SF T + GYSGV + R+ ++L V AEEG TG L+
Sbjct: 101 YYSFI----TIPSKKKGYSGVGCWIRIPEAADPLRLSLQVLKAEEGITGRLKIKKDGALV 156
Query: 106 ------TSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRI 158
T G +GL S ++DSEGRC++ + ++ +VY P A+S +T
Sbjct: 157 AYCEDPTIGIGGYDGLPYGSDANAQELDSEGRCLLVELACKVVVISVYCP-ANSMNTEEG 215
Query: 159 Q-FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDR--------------CDAGP- 202
+ F+L+F L KR + G+R+ ++GDLN+ ID CD
Sbjct: 216 EVFRLRFLKTLFKRVRNIENLGKRVVLMGDLNVCRDLIDHASCITRNNIKINPDCDGAVL 275
Query: 203 ---------DFAKNEFRIWFR---SMLVES-------GGSFFDVFRSKHPERR-EAYTCW 242
+F RI R ML++S G D R +R + YT W
Sbjct: 276 ERIYQEEAREFIYEPLRIGRRLLNEMLIDSIIPDLAEKGVLIDSTRYAQGRKRLKMYTVW 335
Query: 243 PSNTGAEQFNYGTRIDHILCA 263
+ + NYG+R+D+IL +
Sbjct: 336 DTYRNSRPANYGSRVDYILVS 356
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
++ PLCK H + V + K FG++F+ C R G + +A+CG+F+W
Sbjct: 508 SNAPLCK-HGDRSVLKT-SKTSTNFGKQFWTCKRPRGAPEDIKASCGFFQW 556
>gi|219122782|ref|XP_002181718.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406994|gb|EEC46932.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 489
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 134/297 (45%), Gaps = 47/297 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQEL-------KSDLVMA 52
M+I ++NV GLR + +L + + D++C QETKL+ L + L+
Sbjct: 167 MRIASWNVAGLRALMRNSPHALSDFVREHNVDVLCLQETKLQESHLDDPKLKIRGHLLEK 226
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL---LETSGS 109
+G++S++SC+ R GYSG + F + + ++VA + G ETS S
Sbjct: 227 EGFDSYYSCS----TARKGYSGTSVFVKRRQLIKGSKVAKKQKTLGSYFGKNDERETS-S 281
Query: 110 KIMEGLEDFSKDELL-------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
++G E+ S D L K DSEGR V+ D F + NVY P + +
Sbjct: 282 NSLKGTEELSIDPHLLVPEGVSFQMNVDKHDSEGRIVVVDFPSFTMCNVYVPNS-GQKLE 340
Query: 157 RIQFKLQ-----FFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRC-DAGPDFAKN--- 207
R+ ++ + F +QK+ + +G + +GDLN+A ++ D AK
Sbjct: 341 RLSYRTEEWDKDFLSFIQKKQK---DRGVPVLWLGDLNVAHTNLEVWNDGAKHLAKQAGV 397
Query: 208 --EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 262
E R F + L F D FR HP + Y+ W G + N G R+D+ +C
Sbjct: 398 TAEERASFEAQL---NAGFIDAFRRLHPTAKGHYSYWSQRAGNREPNKGLRLDYFIC 451
>gi|169787224|gb|ACA80051.1| putative DNA lyase [Colletotrichum caudatum]
gi|399573804|gb|AFP49241.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
Length = 233
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLQDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L +Y P + D+ R F+L++ + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGIYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|297539760|ref|YP_003675529.1| exodeoxyribonuclease III Xth [Methylotenera versatilis 301]
gi|297259107|gb|ADI30952.1| exodeoxyribonuclease III Xth [Methylotenera versatilis 301]
Length = 262
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 122/275 (44%), Gaps = 42/275 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI++ N+NG+R ++ ++ L + +AD++C QE K ++ ++ +++ GY +F
Sbjct: 1 MKIISLNLNGIRSATNK--GVQTWLQTQNADVVCMQEIKAQQADMTPEMLNPAGYYGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +C+ K P A EG G S
Sbjct: 59 YAE-----KKGYSGVGIYCKAK----------PDAVIEGLGG----------------SN 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D + IDSEGR + G+ + ++Y P S + R FK + L+ GR
Sbjct: 88 DGVQDIDSEGRYLECQFGNLSVISLYLPSGSSGEE-RQAFKFSVMTRFMLHMQALIKSGR 146
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD NIA D + + + F R W ++ E G + DV+R+ HP
Sbjct: 147 EIIICGDWNIAHKEADLKNYKGNKKNSGFLPEERAWLTTLFDEVG--WVDVYRTLHPNTT 204
Query: 237 -EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
E YT W + A N G RID+ + A P + K
Sbjct: 205 DECYTWWSNRGQAYAKNVGWRIDYQI-ATPAIAAK 238
>gi|67606491|ref|XP_666752.1| dna-(apurinic or apyrimidinic site) lyase [Cryptosporidium hominis
TU502]
gi|54657802|gb|EAL36520.1| dna-(apurinic or apyrimidinic site) lyase [Cryptosporidium hominis]
Length = 498
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 114/459 (24%), Positives = 171/459 (37%), Gaps = 140/459 (30%)
Query: 1 MKIVTYNVNGL----RQRVSQFGSLRKLLDSF--------------DADIICFQETKLR- 41
+ I+++NVNGL ++R KLLD+ DIIC QE K+
Sbjct: 4 LSIISFNVNGLISFTKRRGYTESIFSKLLDNICVNDEVTNANLNVESPDIICLQECKMSF 63
Query: 42 RQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFT 101
+L + + YES+FS + + YSGVAT+ S++ + + A +GF+
Sbjct: 64 GDDLNNSIGCPGNYESYFSLAENNKR----YSGVATY--------SSKKTMVIEAAKGFS 111
Query: 102 GL------------LETSGSKIMEGLEDFSKDE----LLKIDSEGRCVITDHGHFILFNV 145
L ++T + +E KD+ + +ID EGRCVITDH F+L N+
Sbjct: 112 WLESNPCQFDINQMIQTEKLQEIESNISKIKDKYGISISEIDGEGRCVITDHKQFVLLNL 171
Query: 146 YGPRADSE-------------------------------DTVRIQFKLQFFHVLQKRWEF 174
Y P S+ D R +++L F L
Sbjct: 172 YVPLLRSKAEEKEEKEKEEVVLKEIQNQNETQIELSETVDPERFKYRLAFQEYLNLLLHV 231
Query: 175 L--LCQGRRIFVVGDLNIAPAAI---------DRCDAGPDFAKNEFRIW----------- 212
L C+ R + + GD NI I D C P KN I
Sbjct: 232 LKNACK-RNVILAGDFNIILEKIDCYDDCGILDNCKLAPCVLKNTKEILETSSFAKAYMH 290
Query: 213 FRSMLVE--SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
R M +E G D +R +P YTCW + N GTRID L + + +
Sbjct: 291 MRRMNIEMIKGYCLVDAYRHYYPRTNNKYTCWSQMNQSRIRNQGTRIDLFLVSKGLISES 350
Query: 271 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL--GEVPE 328
+C+IL + GSDH P+ + L GE
Sbjct: 351 I-------------KCEIL-------------------DHIYGSDHCPILLILKTGEFES 378
Query: 329 I---PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQ 364
+ + PS+ S+YLP + Q T+ L ++ Q
Sbjct: 379 LYNNEKRKPPSICSKYLPQCKQRQSTISQFLTLSKIEGQ 417
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 127/275 (46%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ +L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK-----VLE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 132/287 (45%), Gaps = 54/287 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V+ + LD F DADI C QETKL QE + +L + Y
Sbjct: 1 MKLVSWNVNGLRACVN-----KGFLDYFKQTDADIFCVQETKL--QEGQIELELGSDYRQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + + GYSG A F R++ P S + G+E+
Sbjct: 54 YWNYAQ-----KKGYSGTAVFTRLE-PLS------------------------VRYGIEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
DE + EGR + + HF L NVY P A D R+ ++L++ +R+ L
Sbjct: 84 ---DE----EPEGRIITLEFQHFYLVNVYTPNA-KRDLSRLSYRLEWEERF-RRYLQQLD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERR 236
+ + + GDLN+A ID +A + + F + R + + F D FR +P+R
Sbjct: 135 AVKPVIICGDLNVAHQEIDLKNAKSNLGNSGFTLEERGKMTDLLAAGFIDSFRFFYPDRT 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+ Y+ W + N G RID+ L + + D + + CHV
Sbjct: 195 DVYSWWSYMAKVRERNIGWRIDYFLVSARLSEKLVDAE----IDCHV 237
>gi|401840624|gb|EJT43369.1| APN2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 520
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 175/433 (40%), Gaps = 103/433 (23%)
Query: 2 KIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+ +++NVNG+R Q SQ SL+ + D F ADII FQE K + + S DG+
Sbjct: 18 RFLSFNVNGIRTFFHYQPFSQMKQSLKSVFDFFKADIITFQELKTEKLSI-SKWGKVDGF 76
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK---- 110
SF S + R GYSGV + R+ L V AEEG TG L K
Sbjct: 77 YSFISIPQI----RKGYSGVGCWIRILDKDHPLYHGLQVVKAEEGITGYLTIKNGKQSVV 132
Query: 111 -----IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVR 157
+G+ D ++ L++DSEGRCV+ + ++ +VY P +
Sbjct: 133 SYRDDANQGIGGYDSLDPDLNEKNALELDSEGRCVMVELACGIVIVSVYCPANSNSSEKG 192
Query: 158 IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA------------ 205
F+++F VL +R + L G++I ++GD+N+ ID D +F+
Sbjct: 193 ELFRIKFLKVLLRRVKNLDKMGKKIVLMGDVNVCRDLIDSADMLEEFSIPIIDPMGGKDL 252
Query: 206 KNEFR--------------------IWFRSMLVESG--GSFFDVFRSKHPERR-EAYTCW 242
+ +R I F S+L ++ G D R R YT W
Sbjct: 253 EQRYRDEAIQFIVNPETPHRRIFNQILFDSLLPDASKEGILIDTTRLIQTRSRLRMYTVW 312
Query: 243 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 302
S + NYG+RID IL S C + DIL D
Sbjct: 313 NSLKNSRPSNYGSRIDFILA------------SSKLEQC-IKAGDILPD----------- 348
Query: 303 WKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST-----PSLASRYLPIIRGVQQTLVSVLM 357
+ GSDH PVY L + + ST P +R +R + ++ +
Sbjct: 349 --------ILGSDHCPVYSDLDLRDQEVKSSTTEISIPKFEARNKFNLR--NRNVLEMFA 398
Query: 358 KREVAKQGKSCKF 370
K+E+ K+ K ++
Sbjct: 399 KKELGKESKQQQY 411
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLCK H E + R K G++F++C R+ G +SN E++CG+F+W
Sbjct: 474 PLCK-HGEESILRT-SKTSTNPGKKFWICKRSRGDSSNTESSCGFFQWV 520
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 125/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|254580459|ref|XP_002496215.1| ZYRO0C13222p [Zygosaccharomyces rouxii]
gi|238939106|emb|CAR27282.1| ZYRO0C13222p [Zygosaccharomyces rouxii]
Length = 500
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 138/322 (42%), Gaps = 68/322 (21%)
Query: 2 KIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+ +T+NVNGLR Q S S+ + D F+ADII FQE K+ R L + D +
Sbjct: 17 RFLTFNVNGLRTLFHYQPFSNMNQSIENVFDYFNADIITFQELKVERSAL-TKWGKLDNF 75
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKIMEG 114
SF S + R GYSGV + R+ +L V AEEG TG L G KI +
Sbjct: 76 YSFISIP----QARKGYSGVGCWIRILPKDHPLHNSLKVIKAEEGITGRL---GVKIGKD 128
Query: 115 LEDFSKD-----------------ELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
L +S D E LKIDSEGR V+ + + ++ VY P +
Sbjct: 129 LVTYSSDSSIGIGGYESLPYNDEQEALKIDSEGRSVMVELASNTVVICVYCPANSTLSEE 188
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP-------------- 202
F+++F +L KR L G+++ ++GDLN+ ID ++
Sbjct: 189 GELFRVKFLKILFKRIRNLDAMGKKVVLMGDLNVCRDLIDHAESLERASMPITDNMGGLE 248
Query: 203 ----------DFAKN---EFRIWFRSMLVESG-------GSFFDVFRSKHPERR-EAYTC 241
DF N R F ML +S G D R K +R + YT
Sbjct: 249 IEEKFQNSCRDFIINPDVPHRRLFNQMLSDSMFSEMALEGVLIDTTRLKQSRKRLKMYTV 308
Query: 242 WPSNTGAEQFNYGTRIDHILCA 263
W + + NYG+RID +L +
Sbjct: 309 WNTFKNSRPANYGSRIDFVLTS 330
>gi|333986432|ref|YP_004519039.1| exodeoxyribonuclease III [Methanobacterium sp. SWAN-1]
gi|333824576|gb|AEG17238.1| exodeoxyribonuclease III [Methanobacterium sp. SWAN-1]
Length = 259
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 121/267 (45%), Gaps = 49/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQ-FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
++I+++NVNG+R + FG K + DI+C QETK R+++ D+ +GY ++
Sbjct: 4 IRILSWNVNGIRAVHKKGFGEWFK---TEQPDILCVQETKAVRKQVPRDIREFEGYHTYL 60
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + R GYSGVA + R+K P E GF G++ F
Sbjct: 61 S-----EADRKGYSGVALYTRIK----------PEKVEYGF-------------GIDKF- 91
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D EGR +I D+G F+LFN+Y P R+Q+K+ F+ + + L +G
Sbjct: 92 -------DLEGRTLIADYGDFVLFNIYFPNGKMSPE-RLQYKMDFYDAFMEYADKLKDEG 143
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 235
+ I V GD+N A ID + + F R W L + D FR + E
Sbjct: 144 KNIVVCGDVNTAHKEIDLARPKENEKISGFLPEERAWIDEFL---NHGYVDTFREFNQEE 200
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILC 262
+ YT W T A N G R+D+
Sbjct: 201 GQ-YTWWSYRTRARDRNVGWRLDYFFV 226
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 129/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + +GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---NGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNTG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSIDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|406963318|gb|EKD89414.1| hypothetical protein ACD_34C00070G0007 [uncultured bacterium]
Length = 256
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 120/277 (43%), Gaps = 45/277 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVNG R + + + + + DI+C QE K + ++L S+ + GY+ ++
Sbjct: 1 MKITTWNVNGFRAILKK--DFQNSIQNLSPDILCLQELKAKEEQLSSEDISIPGYDRLWN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGV T+ + G KI E
Sbjct: 59 SAV-----RPGYSGVGTYVK--------------------------QGVKIAEHSNGLGL 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DE D EGR + + FILFN+Y P R+ +KL+F+ L + +G+
Sbjct: 88 DEF---DVEGRVIQSKLDDFILFNIYFPNGQRGQD-RVDYKLRFYARLLDMCKEEHAKGK 143
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD N A ID + + + F R W + L E+G F D FR +PE+
Sbjct: 144 NIIITGDFNTAHKEIDLANPKENSKISGFLPEERAWIDTYL-ENG--FTDAFRLLYPEKV 200
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 273
+ YT W A G R+D+ L + P + + D+
Sbjct: 201 Q-YTWWTYRVNARARGIGWRLDYYLVSNPFMQRVKDV 236
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 54/287 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ + DADI C QETKL+ +++ DL Y+ +++
Sbjct: 1 MKLVSWNVNGLRACVTK--GFMDYFNEADADIFCVQETKLQAGQIELDL--GPEYQQYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S + GLE+ S
Sbjct: 57 YAE-----KKGYSGTAVFTRI-APLS------------------------VRYGLEEDS- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ-- 178
+ EGR + + F L NVY P A D R+ ++L++ ++R+ L Q
Sbjct: 86 ------EPEGRVITLEFEDFYLVNVYTPNA-KRDLSRLDYRLEW----EERFRTYLLQLD 134
Query: 179 -GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERR 236
+ + V GDLN+A ID +A + + F + R + + F D FR +P+R
Sbjct: 135 ERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHFYPDRT 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+ Y+ W + N G RID+ L + + D + + CHV
Sbjct: 195 DVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAE----IDCHV 237
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|379010717|ref|YP_005268529.1| exodeoxyribonuclease III [Acetobacterium woodii DSM 1030]
gi|375301506|gb|AFA47640.1| exodeoxyribonuclease III [Acetobacterium woodii DSM 1030]
Length = 254
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 137/327 (41%), Gaps = 79/327 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R ++ ++ D++C QETK +L++ L+ GY ++F
Sbjct: 1 MKIISWNVNGIR--AAEKKGFLTFIEEVSPDLLCIQETKAHDHQLEASLLDIPGYFAYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + + + P+A I GL D +
Sbjct: 59 SGE-----KKGYSGTAVYYKQE----------PLA---------------IRTGLSDAT- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++EGR +I ++ FIL+NVY P +D R+ FK+ F LQ + LL +
Sbjct: 88 -----FNNEGRTIIMEYPDFILYNVYFPNGQKDDE-RLNFKMAFNQCLQNDIQKLLDAKK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ V GD+NIA ID + + ++ F R W L D +R +HPE
Sbjct: 142 NVIVCGDINIAHQEIDLKNPKENSKRSGFLPEERAWIDDFL---SIGMVDSWRVQHPEEV 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+ Y+ W A N G RID + P + + V C DIL D
Sbjct: 199 K-YSWWSYRFNARAHNAGWRIDSFFVSEPFMSR---------VDC----TDILND----- 239
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ GSDH P+ + L
Sbjct: 240 --------------VLGSDHCPIVLTL 252
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARNKNIGWRIDYFLCSNP 223
>gi|154286664|ref|XP_001544127.1| hypothetical protein HCAG_01173 [Ajellomyces capsulatus NAm1]
gi|150407768|gb|EDN03309.1| hypothetical protein HCAG_01173 [Ajellomyces capsulatus NAm1]
Length = 616
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 42/198 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ +ADI+ FQETK++R++L+ D+V+ +G++ FFS + K
Sbjct: 3 MFDALEADIVIFQETKIQRKDLQDDMVLVNGWDCFFSLPKYK----------------KG 46
Query: 84 PFSSTEVALPVAAEEGFTGL--LETSGSKIME--GLEDFSKD-----------------E 122
P S + P+ AEEG TG+ L TSGS + D ++ +
Sbjct: 47 PNS---ICCPIRAEEGITGILCLPTSGSNLSSPTSFRDLPEEAQIGGYPTAEQLALSDVD 103
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 182
+DSEGRC+I + F+L VY P + D R F+ F +VL R L G+R+
Sbjct: 104 AATLDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNVLDARVRNLATMGKRV 161
Query: 183 FVVGDLNIAPAAIDRCDA 200
V+GDLNI+ + ID A
Sbjct: 162 IVMGDLNISGSQIDSARA 179
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 20/184 (10%)
Query: 449 PFHVDRARKKAKKSQL-GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEE 507
P + R+ A ++ GQ +LK FF ++ T S + N + +S + E
Sbjct: 339 PKRLKRSESSATTTKAKGQKTLKGFFGPKTTPC------TTVASADDENDHSKSSATTEG 392
Query: 508 VPESHHHSNKIPVTDYSCSVHELHGVNSSVCS----HDQDEKKGKRFLDKERNNVALLEW 563
+ K P + C + +G S + +D+D R D N + W
Sbjct: 393 GSPQKGTAIKPPCSSGGCCDSQENGCQQSQTAGPPAYDKDNDNSGRVHDPIANKES---W 449
Query: 564 RRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGY 619
++ + P C GH EPC++ V KK G GR F++C+R GP + + C
Sbjct: 450 SKL--FTKKPPPKCDGHDEPCISLVTKKAGINRGRSFWICSRPLGPTGIKKTGDQWRCDT 507
Query: 620 FKWA 623
F W+
Sbjct: 508 FIWS 511
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|169787326|gb|ACA80102.1| putative DNA lyase [Colletotrichum nicholsonii]
Length = 233
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L ID
Sbjct: 54 ----NATCSPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATID 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ ID C+
Sbjct: 166 LNVIRDEIDTCNV 178
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 123/266 (46%), Gaps = 48/266 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R + + + DAD C QETK + ++ ++ +GYE +++
Sbjct: 1 MKFISWNVNGIRACLGK--GFLEFFHQIDADFFCIQETKCQAGQV---VLSIEGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F + +P S V V AE+ S+
Sbjct: 56 YAQ-----KKGYSGTAIFTK-HTPLS---VKYGVGAED--------------------SQ 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L NVY P A D R+ +LQ+ L + L CQ +
Sbjct: 87 D-------EGRIITLEYKNFYLVNVYTPNA-QRDLARLPLRLQWEDRLANYLQELNCQ-K 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERRE 237
+ GDLN+A ID +A + + F R S L+ESG F D FR KHPE +
Sbjct: 138 PVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSALLESG--FVDSFRYKHPEETD 195
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
YT W + N G RID+ + +
Sbjct: 196 HYTWWSYMNKVRERNIGWRIDYFVVS 221
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|169787256|gb|ACA80067.1| putative DNA lyase [Colletotrichum nicholsonii]
gi|169787264|gb|ACA80071.1| putative DNA lyase [Colletotrichum nicholsonii]
gi|169787302|gb|ACA80090.1| putative DNA lyase [Colletotrichum nicholsonii]
gi|169787310|gb|ACA80094.1| putative DNA lyase [Colletotrichum nicholsonii]
Length = 233
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L ID
Sbjct: 54 ----NATCSPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATID 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ ID C+
Sbjct: 166 LNVIRDEIDTCNV 178
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 54/287 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ + DADI C QETKL+ +++ DL Y+ +++
Sbjct: 1 MKLVSWNVNGLRACVTK--GFMDYFNEADADIFCVQETKLQAGQIELDL--GPEYQQYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S + GLE+ S
Sbjct: 57 YAE-----KKGYSGTAVFTRI-APLS------------------------VRYGLEEDS- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ-- 178
+ EGR + + F L NVY P A D R+ ++L++ ++R+ L Q
Sbjct: 86 ------EPEGRVITLEFEGFYLVNVYTPNA-KRDLSRLDYRLEW----EERFRTYLLQLD 134
Query: 179 -GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERR 236
+ + V GDLN+A ID +A + + F + R + + F D FR +P+R
Sbjct: 135 ERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHFYPDRT 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+ Y+ W + N G RID+ L + + D + + CHV
Sbjct: 195 DVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAE----IDCHV 237
>gi|169787200|gb|ACA80039.1| putative DNA lyase [Colletotrichum nicholsonii]
Length = 233
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L ID
Sbjct: 54 ----NATCSPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATID 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ ID C+
Sbjct: 166 LNVIRDEIDTCNV 178
>gi|254564561|ref|XP_002489391.1| Class II abasic (AP) endonuclease involved in repair of DNA damage
[Komagataella pastoris GS115]
gi|238029187|emb|CAY67107.1| Class II abasic (AP) endonuclease involved in repair of DNA damage
[Komagataella pastoris GS115]
gi|328349821|emb|CCA36221.1| AP endonuclease 2 [Komagataella pastoris CBS 7435]
Length = 520
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 152/367 (41%), Gaps = 84/367 (22%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++ VT+NVNG + + + S K+ ADII QE K+++ L +L Y
Sbjct: 16 VRFVTFNVNGTKTLCNYHPWNKMKSFDKIFGYLFADIITLQELKVQKDNLDHELNEIPNY 75
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA---AEEGFTGLLETSGSKI- 111
SF T R GYSGV F R+ + S ++ +A AEEG TG L++S S
Sbjct: 76 RSFV----TLATNRKGYSGVGVFVRIPADEESDQIKSCLAVVHAEEGITGYLKSSQSTTS 131
Query: 112 ------MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF-KLQF 164
+ G D S+ +ID +GRCV+ + G+ ++ A+S T + +F ++ F
Sbjct: 132 YRDLNNIGGYPDISEVLANEIDFQGRCVVLELGNMMVIISVYCFANSMGTEQGEFHRVLF 191
Query: 165 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDR-----------------CDAGPDF--- 204
+ +R E L G+ + ++GD+N++ ID + G F
Sbjct: 192 LRCILERAEKLQQMGKTVVIMGDINVSRDLIDNEVYLREGIADKSLIPPINNDGAHFEEA 251
Query: 205 ---AKNEFRIWF--RSML-------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFN 252
A +FR RS+L G D FR H +YT W + N
Sbjct: 252 NKTAVLQFRTASQPRSLLNSFIKDKYNDSGILHDTFREHHGRVMRSYTVWNTLKNTRPLN 311
Query: 253 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 312
G+RID ILC+ L++ +C+IL W L
Sbjct: 312 IGSRIDLILCSTALLNK-------------FKKCEIL----PW---------------LM 339
Query: 313 GSDHAPV 319
GSDH PV
Sbjct: 340 GSDHCPV 346
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP----EANCGYFKW 622
PLC H EPCV RV KK GR+F+ C+RA P N E C F+W
Sbjct: 469 PLC-DHNEPCVLRVCKKESKNKGRKFWCCSRAPRPDENSNKLDEYRCNTFQW 519
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRMVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 127/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRISYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKERAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 127/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLVSWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFSK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|187918395|ref|YP_001883958.1| exodeoxyribonuclease III [Borrelia hermsii DAH]
gi|119861243|gb|AAX17038.1| exodeoxyribonuclease III [Borrelia hermsii DAH]
Length = 253
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 121/267 (45%), Gaps = 50/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
M ++++NVNG+R + FG + ++ ++ DI+C QETK +++L +L+ +GY S+F
Sbjct: 1 MNLISWNVNGIR---AVFGKGFFEFIEKYNPDILCLQETKACKEQLPKELISIEGYYSYF 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + GYSGVA + +++ P+ LE +I
Sbjct: 58 SKSIIK-----GYSGVALYSKIE----------PIK--------LENMRMEIF------- 87
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D EGRC+I + FIL N Y P + + R+ +KL+F L+ + G
Sbjct: 88 -------DREGRCLIAHYRDFILINAYFPNSQALRK-RLNYKLEFLMSLESIANSFVTAG 139
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPER 235
+ + + GD NIA ID + F I W + L G + D FR + E
Sbjct: 140 KNVVICGDFNIAHTEIDLSNPKSSRESAGFYIEETTWMDNFL---NGGYVDTFRMFNGEP 196
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILC 262
YT W T A + N G RID+ L
Sbjct: 197 GN-YTWWDYRTRARERNIGWRIDYFLV 222
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 135/286 (47%), Gaps = 62/286 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V + G L D DADI C QETKL+ ++ +L +GYE +++
Sbjct: 1 MKLISWNVNGIRACVKK-GFLDYFTD-IDADIFCLQETKLQEGQINLEL---EGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P+ + G G+E+
Sbjct: 56 YAV-----KKGYSGTAIFTKQK----------PIEVKYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D EGR + + F L NVY P + SE R+ +++++ + + E+L L
Sbjct: 86 ------DQEGRVITLEFEDFYLVNVYTPNSQSE-LARLDYRMKWEDIFR---EYLKDLDN 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + GDLN+A ID R +AG D +N+ + L+ESG F D FR
Sbjct: 136 IKPVILCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKM-----TELLESG--FTDSFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+PE+ +Y+ W A + N G RID+ + + + D Q H
Sbjct: 189 LYPEKEGSYSWWSYMRKARENNSGWRIDYFIVSEKMKDKIKDAQIH 234
>gi|374584780|ref|ZP_09657872.1| exodeoxyribonuclease III Xth [Leptonema illini DSM 21528]
gi|373873641|gb|EHQ05635.1| exodeoxyribonuclease III Xth [Leptonema illini DSM 21528]
Length = 346
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 121/269 (44%), Gaps = 34/269 (12%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNG+R VS+ G LD D DI C QET+ R ++ + E
Sbjct: 83 LKLYSWNVNGIRA-VSKKGFF-DWLDQADPDIFCLQETRARTPQVVKEEQARPLLEDNRY 140
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C ++ + GYSGVATF + K P + + GF +
Sbjct: 141 CWYWANAEKGGYSGVATFSKYK----------PASYQSGF-----------------IND 173
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+SEGR +IT++ F+L+NVY P R+++KL F+ W+ +G+
Sbjct: 174 PADRNYNSEGRVMITEYPGFVLWNVYFPNG-GRGPERVEYKLAFYEHCLDLWQKTRSEGK 232
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML--VESGGSFFDVFRSKHPERREA 238
RI + GD N A ID + F R+ L +ES G + D+FR ++ E
Sbjct: 233 RIIITGDYNTAHKEIDLARPKENSKVTGFLPEERAFLDKMESLG-YIDIFR-RYDASPEK 290
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
YT W T A + N G RID+ + L
Sbjct: 291 YTYWDQFTRARERNAGWRIDYFWISEETL 319
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ +L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLK-----VLE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RKKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A + G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|339500619|ref|YP_004698654.1| exodeoxyribonuclease III Xth [Spirochaeta caldaria DSM 7334]
gi|338834968|gb|AEJ20146.1| exodeoxyribonuclease III Xth [Spirochaeta caldaria DSM 7334]
Length = 258
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 122/269 (45%), Gaps = 54/269 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDL---VMADG--Y 55
M+I+++NVNGLR V + G ++ + D AD++C QETK +L +L V A+G Y
Sbjct: 1 MRILSWNVNGLRA-VEKKGFVQWMRDE-SADVVCIQETKAHPGQLSPELLEPVDAEGKPY 58
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+S+++ + + GYSG A + R+ E + M G+
Sbjct: 59 KSYWASAK-----KAGYSGTAIYSRI-----------------------EPLNIRTM-GI 89
Query: 116 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 175
+DF D EGR +I D F L + Y P + E R+ +KL F + + L
Sbjct: 90 KDF--------DDEGRVLIADFDRFTLISAYFPNS-QEAGARLDYKLAFCDAMLETCNKL 140
Query: 176 LCQGRRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ G+ I + GD NIA ID + P + E R W L + D FR+
Sbjct: 141 VQSGKNIILCGDYNIAHTPIDLARPEDNEENPGYLPEE-RAWMTKFLF---AGYVDTFRA 196
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDH 259
+HP YT W T A + N G RID+
Sbjct: 197 EHPGEGGHYTWWSYRTRARERNIGWRIDY 225
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---RGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|203284438|ref|YP_002222178.1| exodeoxyribonuclease III [Borrelia duttonii Ly]
gi|201083881|gb|ACH93472.1| exodeoxyribonuclease III [Borrelia duttonii Ly]
Length = 254
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 118/266 (44%), Gaps = 48/266 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M ++++NVNG+R VS G L + + DI+C QETK +++L +L+ +GY S+FS
Sbjct: 2 MNLISWNVNGIRA-VSNKGFL-NFIAEYSPDILCLQETKALKEQLPRELIDIEGYYSYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + +++ P+ E +E F
Sbjct: 60 KSIIK-----GYSGVAIYSKIE----------PIKLEN--------------MNIEIF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGRC+I + FIL N Y P + S R+ +KL+F L+ + G+
Sbjct: 89 ------DREGRCIIAHYHDFILINAYFPNSQSLRK-RLNYKLEFLMSLESIANSFVTSGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPERR 236
+ V GD NIA ID + F + W + L + D FR + E
Sbjct: 142 NLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFL---NRGYVDTFRMFNKEPG 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
YT W T A + N G RID+ +
Sbjct: 199 N-YTWWDYKTRARERNVGWRIDYFVI 223
>gi|169787320|gb|ACA80099.1| putative DNA lyase [Colletotrichum eleusines]
Length = 233
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFDILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L + +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRPDQLPGEVDEVTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCVI + F+L Y P + D+ R F+L + + L R L+ G+++ + GD
Sbjct: 108 SEGRCVILEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRIITCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|218130897|ref|ZP_03459701.1| hypothetical protein BACEGG_02492 [Bacteroides eggerthii DSM 20697]
gi|217987241|gb|EEC53572.1| exodeoxyribonuclease III [Bacteroides eggerthii DSM 20697]
Length = 254
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 131/295 (44%), Gaps = 48/295 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GLPEWLANEQPDVLCLQETKLQPEQYPAEALDALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 59 SAR-----KKGYSGVAILTKRE----------PDHVEYGM-------------GMEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR + D+G + +VY P S D R FK+ + ++ L
Sbjct: 89 ------DSEGRFMRADYGDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFRQYVVELQRTRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI AID D + + F R W L E F D FR HP+++
Sbjct: 142 KLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFLNE---GFIDTFRLLHPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W + N G RID+ + P D + N H + C ++++
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVNEPVRPMLKDARILN-DAVHSDHCPMMLE 251
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 127/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQ---NTFEFKGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNDG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 130/286 (45%), Gaps = 54/286 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V + LD F DADI C QETKL+ +++ DL +GY
Sbjct: 1 MKLVSWNVNGLRACVK-----KGFLDYFHEMDADIFCVQETKLQEGQIELDL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F + K P S V+ VA E
Sbjct: 53 FWNYAI-----KKGYSGTAVFTK-KKPLS---VSYGVADENE------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
+ EGR + + F L NVY P + D R+ F+L + ++ E+L
Sbjct: 86 ---------EDEGRILTLEFEDFYLINVYTPNS-QRDLARLHFRLNWEDRIR---EYLIQ 132
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPE 234
L + + I + GDLN+A + ID +A + + F R + + S F D FR +P+
Sbjct: 133 LNKLKPIVLCGDLNVAHSDIDLKNAKSNRGNSGFTEEERGKMTDLLNSGFIDSFRYFYPD 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 280
+ YT W + N G RID+ + + H+ D Q H+ V
Sbjct: 193 MTDKYTWWSYMRNVREKNIGWRIDYFIVSEELKHRLKDSQIHSHVM 238
>gi|169787364|gb|ACA80121.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|399573816|gb|AFP49247.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 226
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
+ P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAICCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 127/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|124010283|ref|ZP_01694936.1| exodeoxyribonuclease III [Microscilla marina ATCC 23134]
gi|123983668|gb|EAY24108.1| exodeoxyribonuclease III [Microscilla marina ATCC 23134]
Length = 259
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 134/297 (45%), Gaps = 46/297 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI++YNVNG+R + + L + L + D D++C QE K +++ + + A GY ++
Sbjct: 1 MKIISYNVNGIRAAIRK--GLVEWLKAADCDVLCIQELKALEEQVDTAELEALGYHLYWQ 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+T R GYSGVA F R+K + ++ G D+
Sbjct: 59 PAQT----RKGYSGVAIFSRIKP-------------------------NNVVYGYGDYDW 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ ID EGR + D+ +F + +VY P + R+ FK+++ Q+ L
Sbjct: 90 HDTRWIDDEGRIIRADYDNFSVMSVYMPSGTKPE--RVVFKMEWNLAFQQYITELKKVVP 147
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NIA AID + + ++ F R W + E G F D FR +PE
Sbjct: 148 HLIICGDYNIAHQAIDIHNPKSNAKRSGFLPEERNWLTDFM-ELG--FTDSFRYLNPEPH 204
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT--CHVNECDILID 291
YT W T A N G RID+ + + +L+ ++ H + C ILI+
Sbjct: 205 N-YTWWNVRTNARAKNLGWRIDYQMISKSL---NENLKRAVILSEAMHSDHCPILIE 257
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 127/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|365983476|ref|XP_003668571.1| hypothetical protein NDAI_0B02930 [Naumovozyma dairenensis CBS 421]
gi|343767338|emb|CCD23328.1| hypothetical protein NDAI_0B02930 [Naumovozyma dairenensis CBS 421]
Length = 556
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 135/322 (41%), Gaps = 66/322 (20%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGS----LRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVN +R F S L K+ DADII FQE K + + D
Sbjct: 12 LRFLTFNVNAIRTFFHYDPFSSMNENLSKVFSYLDADIITFQELKTETSSIIKWGKLCDF 71
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLET-----SG 108
Y SF S T + GY+GV + R P L V AEEG TG L +G
Sbjct: 72 Y-SFISIPTT----KKGYAGVGCWVRKVEPTHPLYKVLHVTKAEEGITGYLTIKKQGRNG 126
Query: 109 SKI----------MEGLEDFSKD---ELLKIDSEGRCVITDHG-HFILFNVYGPRADSED 154
KI + G E+ + D E L +DSEGRCV+ + + ++ +VY P S
Sbjct: 127 EKIRYRDLPSNDTIGGFENITFDDESEALSLDSEGRCVMVELACNIVVISVYCPANSSRT 186
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA---GPDFAKNE--- 208
F+++F VL KR E L G+ + ++GD+N+ ID +A G KNE
Sbjct: 187 LEGELFRMKFLRVLFKRIENLHHLGKEVVLMGDVNVCRDLIDHAEALEVGGISIKNETTG 246
Query: 209 ---------------------FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAY 239
+R ML +S G D R K R + Y
Sbjct: 247 IEIEAEYQESCRNFILNPDVPYRRLLNQMLTDSIVPELAQTGFLVDTTRMKQSRNRLKMY 306
Query: 240 TCWPSNTGAEQFNYGTRIDHIL 261
T W + NYG+R+D+IL
Sbjct: 307 TVWNTLKNYRPVNYGSRVDYIL 328
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
PLCK H E + R K G+RF++C + G +NP+A+CG+F+W
Sbjct: 510 PLCK-HGEESILRT-SKTSSNPGKRFWICKKPRGDLNNPDASCGFFQW 555
>gi|169787278|gb|ACA80078.1| putative DNA lyase [Colletotrichum caudatum]
Length = 233
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLQDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787362|gb|ACA80120.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 125/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 125/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRMVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|393784198|ref|ZP_10372364.1| exodeoxyribonuclease III (xth) [Bacteroides salyersiae CL02T12C01]
gi|392666238|gb|EIY59753.1| exodeoxyribonuclease III (xth) [Bacteroides salyersiae CL02T12C01]
Length = 254
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 120/270 (44%), Gaps = 47/270 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVTK--GLPEWLSQEQPDVLCLQETKLQPEQYPAEAFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTRRE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR V D+G + +VY P S D R FK+ + Q+ L
Sbjct: 89 ------DNEGRFVRADYGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQQYVTELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI ID D + + F R W L F D FR+ +PE++
Sbjct: 142 KLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---SAGFVDSFRTLYPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 146/347 (42%), Gaps = 109/347 (31%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F DADI+C QETKL QE + +L + +GY
Sbjct: 1 MKLISWNVNGLRSCVG-----KGFLDYFRRADADIVCVQETKL--QEGQLELELPEGYRQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++C + GYSG A F R + P S + +GL D
Sbjct: 54 YWNCAE-----KKGYSGTAVFTRFE-PLS------------------------VRKGLSD 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEF 174
D EGR + + F L NVY P A D R+++++ + F K
Sbjct: 84 GD-------DPEGRVLTLEFPAFFLVNVYTPNA-RRDLSRLEYRIAWEERFRAYLKE--- 132
Query: 175 LLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + V GDLN+A ID R +AG F E R L+E+G F D
Sbjct: 133 -LDARKPVVVCGDLNVAHREIDLKNAKFNRGNAG--FTDEEREAMTR--LLEAG--FTDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA---GPCLHQKHDLQSHNFVTCHVN 284
FR +P+R +AYT W + N G RID+ L + P L
Sbjct: 186 FRHFYPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLAPYLE---------------- 229
Query: 285 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL---GEVPE 328
D LID + + GSDH PV + + GE PE
Sbjct: 230 --DALID-----------------SGIMGSDHCPVGLLMRDPGEQPE 257
>gi|169787424|gb|ACA80151.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 125/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|399573794|gb|AFP49236.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573796|gb|AFP49237.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573798|gb|AFP49238.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573800|gb|AFP49239.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573802|gb|AFP49240.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 239
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G+ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWNVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRPDQLLGEVDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|401626731|gb|EJS44656.1| apn2p [Saccharomyces arboricola H-6]
Length = 524
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 116/431 (26%), Positives = 173/431 (40%), Gaps = 109/431 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SL + D F ADII FQE K + + S DG
Sbjct: 17 VRFLTFNVNGIRTFFHYQPFSQMNKSLTSVFDFFQADIITFQELKTEKLAI-SKWGKVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP---VAAEEGFTGLLETSGSK- 110
+ SF S +T R GYSGV C ++ P + + P V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVG--CWIRIPDENHLLYHPLQVVKAEEGITGYLTIKNGKQ 129
Query: 111 -IMEGLED--------------FSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSED 154
++ +D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 130 SVISYRDDANQGIGGYDSLDPELDQKSALELDSEGRCVMVELACGIVVISVYCPANSNLS 189
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA--------- 205
F+++F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 190 EKGELFRMKFLKVLLRRIRNLDKMGKKIVLMGDVNVCRDLIDSADTLEQFSIPISDPMGG 249
Query: 206 ------------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAY 239
+ R F +L +S G D R R Y
Sbjct: 250 EELEARYRDKAMQFIINPETPHRRIFNQILSDSLLPDASKEGILIDTTRLIQTRNRLRMY 309
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
T W S NYG+RID IL + K +++ N + DIL
Sbjct: 310 TVWNSLKNLRPSNYGSRIDFILISSKF---KQLIKAGNILP------DIL---------- 350
Query: 300 APRWKGGMSTRLEGSDHAPVYMCLG------EVPEIPQHSTPSLASRYLPIIRGVQQTLV 353
GSDH PVY L E+ I + STP +RY +R ++
Sbjct: 351 -------------GSDHCPVYADLDLKDHKMELNTI-KVSTPKFEARYKYNLRN--HNVL 394
Query: 354 SVLMKREVAKQ 364
+ K+++ K+
Sbjct: 395 EMFAKKDLNKE 405
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLCK H E C+ + K P G++F++C R+ G + N E++CG+F+W
Sbjct: 478 PLCK-HGEQCILKTSKTPSNP-GKKFWICNRSRGDSGNTESSCGFFQWV 524
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A + G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 45/293 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+NVNGLR +++ ++ ++ DADII QETK++R++ D GY +++
Sbjct: 8 MKLVTWNVNGLRACMNK--GFKESMEKLDADIISIQETKMQREQASFDF---PGYYEYWN 62
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P S T GL G+E+
Sbjct: 63 SAV-----KKGYSGTAIFSRIK-PLSVT------------YGL----------GIEEH-- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ F L NVY P + E R+ +++ + Q E L + +
Sbjct: 93 ------DQEGRVITAEYDDFYLVNVYTPNSQRE-LARLSYRMAWEDAFQAYCE-DLSKKK 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML-VESGGSFFDVFRSKHPERREAY 239
V GD+N+A ID + + F R L F D FR +P+R AY
Sbjct: 145 TTIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDAFLARGFVDSFRMLYPDREGAY 204
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 292
T W A + N G RID+ L + + D+ N + + C ++++Y
Sbjct: 205 TWWSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTIMNEIMGS-DHCPVVLEY 256
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------NKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLVSWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAL-----KKGYSGVVTFSK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A + G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|344305039|gb|EGW35271.1| AP endonuclease [Spathaspora passalidarum NRRL Y-27907]
Length = 484
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 142/330 (43%), Gaps = 71/330 (21%)
Query: 1 MKIVTYNVNGLRQRV-----SQFGS-LRKLLDSFDADIICFQETKLRRQELKS--DLVMA 52
++ VT+NVNG + ++F + L + S AD+I QE K+ L + D+
Sbjct: 24 VRFVTFNVNGAKTLFNYHPWTKFNNDLNSVFTSLQADVITLQELKVSPSNLSTIKDVGHL 83
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA---LPVAAEEGFTGLLETSGS 109
Y+SF S R + GYSGV F R+ S V V AEEG TG L S
Sbjct: 84 QNYKSFISLPRV----KKGYSGVGVFVRIPQENESNAVKRSLTVVKAEEGITGWLCPRNS 139
Query: 110 KI----MEG-------LEDFSKDELLKIDSEGRCVITDH-GHFILFNVYGPRADSEDTVR 157
K+ M+ ++D + L +DSEGRCV+ + + ++F++Y P S
Sbjct: 140 KLSYRTMDKEQQIGGYVDDLDSQQGLNLDSEGRCVVIEFTNNLVVFSLYCPANSSGTEEG 199
Query: 158 IQFKLQFFHVLQKR-WEFLLCQGRRIFVVGDLNIAPAAIDRCDA------------GP-- 202
+F+L+F VL +R + G+ + ++GD+NI+ ID P
Sbjct: 200 EEFRLKFMKVLFERCYNLKFKLGKEVLIMGDINISTDLIDHAQTIEDMVLNRLGKNSPNG 259
Query: 203 ------------DFAK--------NEFRI--WFRSMLVESGGS-------FFDVFRSKHP 233
DF K NE+ I + + ++S S +D R
Sbjct: 260 NNFETINYEQCCDFKKSTPARHLLNEYVIPGLWHDLSLQSSPSDSHRKQFLYDTTRFLQG 319
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
R + YT W + T + N+G+RID IL +
Sbjct: 320 RRMKMYTVWNTLTNSRAVNFGSRIDLILTS 349
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 127/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VNYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 58/285 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V + S DADI C QETKL++ ++ DL +GYE +++
Sbjct: 1 MKLISWNVNGIRACVEK--GFLDFFKSVDADIFCLQETKLQQGQIDLDL---EGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++A G
Sbjct: 56 YAE-----KKGYSGTAVFTKEK----------PLSASYGLN------------------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
+ + D EGR + ++ F L VY P + E+ R+++++++ F K+ L
Sbjct: 82 --IEEHDKEGRVITLEYDDFYLVTVYTPNS-KEELARLEYRMEWEDAFRAYLKK----LE 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + V GDLN+A ID + P F+ E R F +L F D +R +
Sbjct: 135 KNKPVIVCGDLNVAHKEIDLKNPKTNRKNPGFSDEE-RAKFSELL---ASGFIDTYRYFY 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
P++ AY+ W A N G RID+ + + + + HN
Sbjct: 191 PDKEGAYSWWSYRFNARTKNAGWRIDYFVISEELKDKLVSAEIHN 235
>gi|288560813|ref|YP_003424299.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
gi|288543523|gb|ADC47407.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
Length = 258
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 115/269 (42%), Gaps = 52/269 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
++++++NVNG+R + + G LD F+ ADI+ QETK + ++L L+ GY S
Sbjct: 4 IRLISWNVNGIRA-IHKKG----FLDWFNEEKADIVNLQETKAKIEQLPKKLINVPGYTS 58
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+F R GYSGVAT+ ++ E G+ G+E
Sbjct: 59 YFHSAE-----RGGYSGVATYTSIE-------------PNEVINGM----------GIEK 90
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
F D EGR + D F L N+Y P D R+Q+KL F+ L
Sbjct: 91 F--------DIEGRLIRLDFDDFTLLNIYYPNG-GRDEERLQYKLDFYDAFLDYANDLRD 141
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
QG+ + + GDLN A ID + + F R W L + D FR H
Sbjct: 142 QGKNLVICGDLNTAHKEIDLARPKQNEDVSGFLPIEREWVSKFL---DNGYVDTFRMLHE 198
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILC 262
+E YT W T A + N G R+D+
Sbjct: 199 NEKEKYTWWSYRTRARERNVGWRLDYFFV 227
>gi|169787230|gb|ACA80054.1| putative DNA lyase [Colletotrichum axonopodi]
Length = 233
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLRDDMVLVPGWDVAFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPPAQQIGGYPRPDQLTGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|71905765|ref|YP_283352.1| AP endonuclease [Dechloromonas aromatica RCB]
gi|71845386|gb|AAZ44882.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Dechloromonas aromatica RCB]
Length = 259
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 120/264 (45%), Gaps = 46/264 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I++ N+NG+R S+ ++ + + +AD+IC QE K + +L +++ DG ++F+
Sbjct: 2 LRIISLNLNGIRSAWSK--NVLPWVAAQNADVICLQELKAQLPDLTPEMMAPDGMQAFYH 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV + R K P EGF G
Sbjct: 60 CAE-----KKGYSGVGIWSREK----------PDRVIEGFDG------------------ 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ D+EGR + D G+ + ++Y P S R + K +F V + L +GR
Sbjct: 87 ---GEFDAEGRYIRADFGNLSVISLYLPSGSSSPE-RQEAKFRFLDVFFPQMLALRAEGR 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD NIA AID + + + F R W + E G + DV+R HPE
Sbjct: 143 EIVLCGDWNIAHQAIDLKNWKSNQKNSGFLPEERAWLSRLFEEQG--WVDVYRRLHPETT 200
Query: 237 EA-YTCWPSNTGAEQFNYGTRIDH 259
+A YT W + A N G RID+
Sbjct: 201 DACYTWWSNRGQAWAKNVGWRIDY 224
>gi|169787258|gb|ACA80068.1| putative DNA lyase [Colletotrichum paspali]
gi|169787304|gb|ACA80091.1| putative DNA lyase [Colletotrichum paspali]
Length = 233
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLIPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L ID
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATID 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFEAFVLIGTYSPA--TRDSTRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|169787198|gb|ACA80038.1| putative DNA lyase [Colletotrichum hanaui]
gi|169787210|gb|ACA80044.1| putative DNA lyase [Colletotrichum hanaui]
gi|169787260|gb|ACA80069.1| putative DNA lyase [Colletotrichum hanaui]
gi|169787306|gb|ACA80092.1| putative DNA lyase [Colletotrichum hanaui]
Length = 233
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLRDDMVLVPGWDVAFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPPAQQIGGYPRPDQLTGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|169787274|gb|ACA80076.1| putative DNA lyase [Colletotrichum jacksonii]
Length = 233
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R+ +
Sbjct: 1 MFEILEADIVVMQETKIQRKDLSDDMVLVPGWDVAFSLP----KNKKGYSGVAIYTRIAT 56
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ EEG TG+L S + + + + + L +DSE
Sbjct: 57 -------CCPIRVEEGITGILPAPNSSTSFRDLPPAQQIGGYPRPDQLTGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLAGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 45/293 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+NVNGLR +++ ++ ++ DADII QETK++R++ D GY +++
Sbjct: 1 MKLVTWNVNGLRACMNK--GFKESMEKLDADIISIQETKMQREQASFDF---PGYYEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P S T GL G+E+
Sbjct: 56 SAV-----KKGYSGTAIFSRIK-PLSVT------------YGL----------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ F L NVY P + E R+ +++ + Q E L + +
Sbjct: 86 ------DQEGRVITAEYDDFYLVNVYTPNSQRE-LARLSYRMAWEDAFQAYCE-DLSKKK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML-VESGGSFFDVFRSKHPERREAY 239
V GD+N+A ID + + F R L F D FR +P+R AY
Sbjct: 138 TTIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDAFLARGFVDSFRMLYPDREGAY 197
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 292
T W A + N G RID+ L + + D+ N + + C ++++Y
Sbjct: 198 TWWSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTIMNEIMGS-DHCPVVLEY 249
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A + G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + +E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIDEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|169787354|gb|ACA80116.1| putative DNA lyase [Glomerella graminicola]
gi|169787356|gb|ACA80117.1| putative DNA lyase [Glomerella graminicola]
gi|169787358|gb|ACA80118.1| putative DNA lyase [Glomerella graminicola]
gi|169787360|gb|ACA80119.1| putative DNA lyase [Glomerella graminicola]
gi|169787400|gb|ACA80139.1| putative DNA lyase [Glomerella graminicola]
gi|169787402|gb|ACA80140.1| putative DNA lyase [Glomerella graminicola]
gi|169787404|gb|ACA80141.1| putative DNA lyase [Glomerella graminicola]
gi|169787406|gb|ACA80142.1| putative DNA lyase [Glomerella graminicola]
gi|169787408|gb|ACA80143.1| putative DNA lyase [Glomerella graminicola]
gi|169787466|gb|ACA80172.1| putative DNA lyase [Glomerella graminicola]
gi|169787468|gb|ACA80173.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|169787272|gb|ACA80075.1| putative DNA lyase [Colletotrichum jacksonii]
gi|169787318|gb|ACA80098.1| putative DNA lyase [Colletotrichum jacksonii]
gi|169787322|gb|ACA80100.1| putative DNA lyase [Colletotrichum jacksonii]
gi|169787324|gb|ACA80101.1| putative DNA lyase [Colletotrichum jacksonii]
Length = 233
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R+ +
Sbjct: 1 MFEILEADIVVMQETKIQRKDLSDDMVLVPGWDVAFSLP----KNKKGYSGVAIYTRIAT 56
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ EEG TG+L S + + + + + L +DSE
Sbjct: 57 -------CCPIRVEEGITGILPAPNSSTSFRDLPPAQQIGGYPRPDQLTGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLAGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 125/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|169787216|gb|ACA80047.1| putative DNA lyase [Colletotrichum caudatum]
gi|169787218|gb|ACA80048.1| putative DNA lyase [Colletotrichum caudatum]
Length = 233
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787214|gb|ACA80046.1| putative DNA lyase [Glomerella tucumanensis]
Length = 233
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ ++ +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGV + R
Sbjct: 1 MFETLEADIVVMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPETQQIGGYPRPDQLLGEVDETTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDAGPDFAKNEFRI--WFR 214
LN+ D C+ K + W R
Sbjct: 166 LNVIREERDTCNIREALRKEGMSVEEWMR 194
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINVEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A + G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 127/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMNWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNVGWRIDYFLCSNP 223
>gi|169787490|gb|ACA80184.1| putative DNA lyase [Colletotrichum sublineola]
Length = 233
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 33/210 (15%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ ++ +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGV + R
Sbjct: 1 MFETLEADIVVMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPETQQIGGYPRPDQLLGEVDETTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDAGPDFAKNEFRI--WFRS 215
LN+ D C+ K + W R+
Sbjct: 166 LNVIRDERDTCNIREALRKEGMSVEEWMRT 195
>gi|169787240|gb|ACA80059.1| putative DNA lyase [Glomerella tucumanensis]
gi|169787246|gb|ACA80062.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787292|gb|ACA80085.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787482|gb|ACA80180.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787484|gb|ACA80181.1| putative DNA lyase [Colletotrichum sublineola]
Length = 233
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ ++ +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGV + R
Sbjct: 1 MFETLEADIVVMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPETQQIGGYPRPDQLLGEVDETTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDAGPDFAKNEFRI--WFR 214
LN+ D C+ K + W R
Sbjct: 166 LNVIREERDTCNIREALRKEGMSVEEWMR 194
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 125/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGINIGEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + +E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIDEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|365762129|gb|EHN03737.1| Apn2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 414
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 161/404 (39%), Gaps = 101/404 (25%)
Query: 2 KIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+ +++NVNG+R Q SQ SL+ + D F ADII FQE K + + S DG+
Sbjct: 18 RFLSFNVNGIRTFFHYQPFSQMKQSLKSVFDFFKADIITFQELKTEKLSI-SKWGKVDGF 76
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK---- 110
SF S + R GYSGV + R+ L V AEEG TG L K
Sbjct: 77 YSFISIPQI----RKGYSGVGCWIRILDKDHPLYHGLQVVKAEEGITGYLTIKNGKQSVV 132
Query: 111 -----IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVR 157
+G+ D ++ L++DSEGRCV+ + ++ +VY P +
Sbjct: 133 SYRDDANQGIGGYDSLDPDLNEKNALELDSEGRCVMVELACGIVIVSVYCPANSNSSEKG 192
Query: 158 IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA------------ 205
F+++F VL +R + L G++I ++GD+N+ ID D +F+
Sbjct: 193 ELFRIKFLKVLLRRVKNLDKMGKKIVLMGDVNVCRDLIDSADMLEEFSIPIIDPMGGKDL 252
Query: 206 KNEFR--------------------IWFRSMLVESG--GSFFDVFRSKHPERR-EAYTCW 242
+ +R I F S+L ++ G D R R YT W
Sbjct: 253 EQRYRDEAIQFIVNPETPHRRIFNQILFDSLLPDASKEGILIDTTRLIQTRSRLRMYTVW 312
Query: 243 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 302
S + NYG+RID IL S C + DIL D
Sbjct: 313 NSLKNSRPSNYGSRIDFILA------------SSKLEQC-IKAGDILPD----------- 348
Query: 303 WKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST-----PSLASRY 341
+ GSDH PVY L + + ST P +RY
Sbjct: 349 --------ILGSDHCPVYSDLDLRDQEVKSSTTEISIPKFEARY 384
>gi|169787422|gb|ACA80150.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 124/278 (44%), Gaps = 61/278 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R + + + L+ DAD I QETK + ++++ L D Y +
Sbjct: 1 MKIISWNVNGIRAVMGK--GFAESLEKLDADCILLQETKAQDDQVQTALESIDSYHIY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GR GYSGVA + + P ++ L+D
Sbjct: 57 ---SNSAGRKGYSGVALLTK-QEP---------------------------IQILQDIGI 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQKRWE 173
DE D EGR + + +FIL NVY P + E VR+ ++ L +F L R
Sbjct: 86 DEH---DQEGRVIAAEFENFILLNVYVPNS-GEKLVRLDYRKIWDKELLAYFQQLNSRKP 141
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFR 229
+ C GD N+A ID ++ K+ + I S ++E+G F D FR
Sbjct: 142 LIAC--------GDFNVAHQEIDIARPKANYNKSAGYTQTEIDGISRMLEAG--FVDTFR 191
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
HPE AY+ W GA N G RID++L + +
Sbjct: 192 HLHPETV-AYSWWSYRAGARAKNIGWRIDYVLTSQALI 228
>gi|169787420|gb|ACA80149.1| putative DNA lyase [Glomerella graminicola]
gi|169787426|gb|ACA80152.1| putative DNA lyase [Glomerella graminicola]
gi|169787428|gb|ACA80153.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|21229250|ref|NP_635172.1| exodeoxyribonuclease III [Methanosarcina mazei Go1]
gi|452211659|ref|YP_007491773.1| Exodeoxyribonuclease III [Methanosarcina mazei Tuc01]
gi|20907825|gb|AAM32844.1| Exodeoxyribonuclease III [Methanosarcina mazei Go1]
gi|452101561|gb|AGF98501.1| Exodeoxyribonuclease III [Methanosarcina mazei Tuc01]
Length = 258
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 119/265 (44%), Gaps = 47/265 (17%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR V + G L LL+ DI+C QETK+ + +L ++ GY ++F
Sbjct: 7 LISWNVNGLRAAVKK-GFLDLLLEH-RFDIVCVQETKVSQDKLPREVKNIQGYYNYFVSA 64
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
+ GYSGV TF + K P+ E+G G+E F
Sbjct: 65 E-----QNGYSGVGTFSKNK----------PIKLEKGM-------------GIEVF---- 92
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 182
D EGR + TD+ F+L N+Y P + R+ +K+ F+ L +G+++
Sbjct: 93 ----DREGRFLRTDYEDFVLLNIYFPNGKASQE-RLGYKMAFYDAFLDYANALKSEGKKL 147
Query: 183 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 238
+ GD+N A ID + + F R W L + D FR +PE
Sbjct: 148 VICGDVNTAHKEIDLARPKQNEMISGFLPEERAWMDKFL---AAGYLDSFRMFNPEGGN- 203
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCA 263
Y+ W TGA N G R+D++ +
Sbjct: 204 YSWWSMRTGARSRNVGWRLDYVFVS 228
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKT-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|393788369|ref|ZP_10376499.1| exodeoxyribonuclease III (xth) [Bacteroides nordii CL02T12C05]
gi|392656042|gb|EIY49683.1| exodeoxyribonuclease III (xth) [Bacteroides nordii CL02T12C05]
Length = 254
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 116/269 (43%), Gaps = 47/269 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L L D++C QETKL+ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPDWLAQEQPDVLCLQETKLQPEQYPGEAFEAVGYKGYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTRRE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI AID D + + F R W L F D FR+ +PE++
Sbjct: 142 NLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFVDSFRTLYPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEP 226
>gi|224539496|ref|ZP_03680035.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
gi|423224999|ref|ZP_17211467.1| exodeoxyribonuclease III (xth) [Bacteroides cellulosilyticus
CL02T12C19]
gi|224518891|gb|EEF87996.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
gi|392634046|gb|EIY27978.1| exodeoxyribonuclease III (xth) [Bacteroides cellulosilyticus
CL02T12C19]
Length = 254
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 126/295 (42%), Gaps = 48/295 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L+ AD++C QETKL+ + + + GY+ +
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLEQEQADVVCIQETKLQPDQYPEEALSTLGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKKE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + Q+ L
Sbjct: 89 ------DNEGRFIRADFGDISVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVTELRKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI ID D + + F R W L F D FR HPE++
Sbjct: 142 KLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDTFRLLHPEQQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W + N G RID+ + P + + N H + C +L+D
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVTEPVRPLLKEARILN-DAVHSDHCPMLLD 251
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 127/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +ADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADIFCIQESKMQQEQ---NTFEFKGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A N G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|399573792|gb|AFP49235.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 239
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 135/301 (44%), Gaps = 59/301 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++T+NVNGLR +++ + + ADI+C QETK++R++ D GY +++
Sbjct: 1 MKLITWNVNGLRACMNK--GFADFMTAAGADIVCVQETKMQREQASFDF---PGYHEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P S T GL G E+
Sbjct: 56 SAV-----KKGYSGTAVFSKTE-PLSVT------------YGL----------GQEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG- 179
D EGR + ++ F L NVY P + T R+++++Q+ V Q C G
Sbjct: 86 ------DQEGRVITAEYPDFYLVNVYTPNSQRGLT-RLEYRMQWEDVFQD-----YCAGL 133
Query: 180 ---RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKH 232
+ + V GDLN+A ID + + F R F+ L F D FRS +
Sbjct: 134 ARKKPVIVCGDLNVAAQPIDLKNPDSNHKNAGFTDEERAKFQQFLDHG---FVDSFRSLY 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 292
P++ AYT W A + N G RID+ L + + D+ HN V + C + +++
Sbjct: 191 PDKEGAYTWWSYMFKARERNAGWRIDYFLVSQNGKDRIQDVIIHNEVMGS-DHCPVELEW 249
Query: 293 K 293
K
Sbjct: 250 K 250
>gi|423218261|ref|ZP_17204757.1| exodeoxyribonuclease III (xth) [Bacteroides caccae CL03T12C61]
gi|392627764|gb|EIY21799.1| exodeoxyribonuclease III (xth) [Bacteroides caccae CL03T12C61]
Length = 257
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 131/300 (43%), Gaps = 54/300 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L+ + DI+C QETKL+ + ++ A GY+S+
Sbjct: 2 MKIITYNVNGLRAAVSK--GLPEWLEQENPDILCLQETKLQPDQYPGEVFEALGYKSYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVALLTKQE----------PDHVEYGM-------------GMEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVLELQKSRP 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRN-AKNSGFLPEEREWMTRFL---AAGFIDSFRMLYPEK 198
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYK 293
+E YT W + N G RID+ + + P + L S + H + C ++++ K
Sbjct: 199 QE-YTWWSYRFNSRAKNKGWRIDYCMASEPV---RPLLMSARILNDAMHSDHCPMMLEIK 254
>gi|169787300|gb|ACA80089.1| putative DNA lyase [Colletotrichum miscanthi]
Length = 233
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVIQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLSGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L F + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGFLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787244|gb|ACA80061.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787290|gb|ACA80084.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787486|gb|ACA80182.1| putative DNA lyase [Colletotrichum sublineola]
Length = 233
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ ++ +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGV + R
Sbjct: 1 MFETLEADIVVMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPETQQIGGYPRPDQLLGEVDETTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDAGPDFAKNEFRI--WFR 214
LN+ D C+ K + W R
Sbjct: 166 LNVIRDERDTCNIREALRKEGMSVEEWMR 194
>gi|146415196|ref|XP_001483568.1| hypothetical protein PGUG_04297 [Meyerozyma guilliermondii ATCC
6260]
Length = 543
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 138/334 (41%), Gaps = 74/334 (22%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLV-MAD 53
+++VT+NVNG++ + LL ADI+ QE KL Q L S +
Sbjct: 21 LRLVTFNVNGVKTIFNYHPWNGHKQCFDTLLQYLKADIVSLQELKLTAQNLSSTKIGNTQ 80
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP-----VAAEEGFTGLLETSG 108
Y SF S +T + GYSGV F R+ P + + L AEEG TG L +
Sbjct: 81 KYRSFVSVPKT----KKGYSGVGLFVRI--PNENEDAVLKKNLSVAKAEEGLTGYLFSPD 134
Query: 109 SKIMEGLE------------DFSKDELLKIDSEGRCV-ITDHGHFILFNVYGPRADSEDT 155
K + E D + K+DSEGRC+ + I+F++Y P A+S T
Sbjct: 135 KKGLRYRELAVEECIGCYPTDIDDETCSKLDSEGRCISVQLASGLIIFSLYCP-ANSSGT 193
Query: 156 VRIQF-KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-------------- 200
+ +L F VL +R + L +G + ++GD+N+A ID D
Sbjct: 194 EEGEIQRLLFLRVLLERCKRLEEKGNEVIIMGDINVALDLIDHADYMRESFKQGTLKHSL 253
Query: 201 -----GPDFAKNEFR--IWFR------------------SMLVESGGS--FFDVFRSKHP 233
G + K + F+ SMLV + +D R
Sbjct: 254 NSSGDGSELEKLNLAECLKFKDSTPARSLLNAYVHPSSESMLVANSSKQFLYDTTREVQK 313
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
R YT W + TGA Q N+G+RID IL + L
Sbjct: 314 RRLGMYTVWNTLTGARQSNFGSRIDLILTSSKAL 347
>gi|329955159|ref|ZP_08296116.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
gi|328526158|gb|EGF53177.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
Length = 254
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 48/295 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ + L + D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GFPEWLANEQPDVLCLQETKLQPEQYPAEALDASGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 59 SAR-----KKGYSGVAILTKRE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D+G + +VY P S D R FK+ + Q+ L
Sbjct: 89 ------DNEGRFIRADYGDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFQQYVVELQRTRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI AID D + + F R W L F D FR HP+++
Sbjct: 142 KLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFL---NAGFIDTFRLLHPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W + N G RID+ + P + + N H + C ++++
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVNEPVRPMLKEARILN-DAVHSDHCPMMLE 251
>gi|375358853|ref|YP_005111625.1| exodeoxyribonuclease [Bacteroides fragilis 638R]
gi|301163534|emb|CBW23085.1| exodeoxyribonuclease [Bacteroides fragilis 638R]
Length = 253
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 120/270 (44%), Gaps = 47/270 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVNK--GLPEWLAEENPDVLCLQETKLQPEQYPAEAFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA +V+ P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKVE----------PDHIEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELRKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L F D FR+ +P+++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRTLYPQKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 126/275 (45%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +ADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A + G RID+ LC+ P
Sbjct: 189 FYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|53713851|ref|YP_099843.1| exodeoxyribonuclease [Bacteroides fragilis YCH46]
gi|60682064|ref|YP_212208.1| exodeoxyribonuclease [Bacteroides fragilis NCTC 9343]
gi|265764197|ref|ZP_06092765.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_16]
gi|336410171|ref|ZP_08590652.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_56FAA]
gi|383118771|ref|ZP_09939511.1| exodeoxyribonuclease III (xth) [Bacteroides sp. 3_2_5]
gi|423250356|ref|ZP_17231372.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T00C08]
gi|423255857|ref|ZP_17236786.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T12C07]
gi|423256970|ref|ZP_17237893.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T00C01]
gi|423266064|ref|ZP_17245067.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T12C05]
gi|423271726|ref|ZP_17250696.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T00C42]
gi|423276491|ref|ZP_17255432.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T12C13]
gi|423284050|ref|ZP_17262934.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 615]
gi|52216716|dbj|BAD49309.1| exodeoxyribonuclease [Bacteroides fragilis YCH46]
gi|60493498|emb|CAH08285.1| exodeoxyribonuclease [Bacteroides fragilis NCTC 9343]
gi|251946092|gb|EES86499.1| exodeoxyribonuclease III (xth) [Bacteroides sp. 3_2_5]
gi|263256805|gb|EEZ28151.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_16]
gi|335945633|gb|EGN07443.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_56FAA]
gi|387778446|gb|EIK40541.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T00C01]
gi|392649939|gb|EIY43611.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T12C07]
gi|392652665|gb|EIY46323.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T00C08]
gi|392696582|gb|EIY89774.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T00C42]
gi|392696803|gb|EIY89991.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T12C13]
gi|392701772|gb|EIY94926.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T12C05]
gi|404580596|gb|EKA85305.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 615]
Length = 253
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 120/270 (44%), Gaps = 47/270 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVNK--GLPEWLAEENPDVLCLQETKLQPEQYPAEAFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA +V+ P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKVE----------PDHIEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELRKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L F D FR+ +P+++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRTLYPQKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|153806611|ref|ZP_01959279.1| hypothetical protein BACCAC_00881 [Bacteroides caccae ATCC 43185]
gi|149131288|gb|EDM22494.1| exodeoxyribonuclease III [Bacteroides caccae ATCC 43185]
Length = 263
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 132/301 (43%), Gaps = 54/301 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L+ + DI+C QETKL+ + ++ A GY+S+
Sbjct: 2 MKIITYNVNGLRAAVSK--GLPEWLEQENPDILCLQETKLQPDQYPVEVFEALGYKSYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVALLTKQE----------PDHVEYGM-------------GMEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVLELQKSRP 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRN-AKNSGFLPEEREWMTRFL---AAGFIDSFRMLYPEK 198
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYK 293
+E YT W + N G RID+ + + P + L S + H + C ++++ K
Sbjct: 199 QE-YTWWSYRFNSRAKNKGWRIDYCMASEPV---RPLLMSARILNDAMHSDHCPMMLEIK 254
Query: 294 R 294
+
Sbjct: 255 K 255
>gi|325981921|ref|YP_004294323.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
gi|325531440|gb|ADZ26161.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
Length = 257
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 122/276 (44%), Gaps = 53/276 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T N+NG+R V + + L + AD++C QE K + +L + DGY +F
Sbjct: 1 MQIITLNLNGIRAAVKK--GFLQWLAAQSADVVCVQELKAQLPDLSPAIQSPDGYHGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C G+ GYSGV + R K +++EG+
Sbjct: 59 CA-----GQRGYSGVGIYTRKKP-------------------------DQVIEGI----- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLC 177
+ ID+EGR + D G+ + ++Y P S + + F +FF VLQ L
Sbjct: 84 -GIADIDAEGRFLQADFGNLSIISIYLPSGSSGEHRQAAKFYFMEKFFPVLQN----LKI 138
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
R I + GD NIA ID + + + F R W ++L SG F DVFR +
Sbjct: 139 SNREIILCGDWNIAHKEIDLKNWRSNQKNSGFLPEEREWLSNVLENSG--FIDVFRRLNA 196
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 269
E + YT W + A N G RID+ + A P + Q
Sbjct: 197 E-PDQYTWWSNRGQAWAKNVGWRIDYQI-ATPAIAQ 230
>gi|399573812|gb|AFP49245.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 237
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 48/243 (19%)
Query: 35 FQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV 94
QETK++R++L+ D+V+ G++ FS K + GYSGVA + R P+
Sbjct: 1 MQETKIQRKDLQDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR-------NATCCPI 49
Query: 95 AAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSEGRCVITDHGHF 140
AEEG TG+L S + + + + + L +DSEGRCV+ + F
Sbjct: 50 RAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSEGRCVVLEFPAF 109
Query: 141 ILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
+L Y P + D+ R F+L++ + L R L+ G+++ + GDLN+ +D C+
Sbjct: 110 VLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLNVIRDEMDTCNV 167
Query: 201 GPDFAKNEFRI--W--------FRSMLVES-----------GGSFFDVFRSKHPERREAY 239
K + W F ++ + +D+ R HP R+ +
Sbjct: 168 REALRKEGMSVEEWMGMPSRRLFNHLVFDGRVTGERGEGREAPVLYDLTRIFHPTRQSMF 227
Query: 240 TCW 242
TCW
Sbjct: 228 TCW 230
>gi|313147282|ref|ZP_07809475.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|423277611|ref|ZP_17256525.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 610]
gi|424663743|ref|ZP_18100780.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 616]
gi|313136049|gb|EFR53409.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|404577433|gb|EKA82171.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 616]
gi|404586808|gb|EKA91367.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 610]
Length = 253
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 119/270 (44%), Gaps = 47/270 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ + ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVNK--GLPEWLAEENPDVLCLQETKLQPDQYPAEAFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA +++ P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKIE----------PDHIEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELRKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L F D FR+ +PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRTLYPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|427383096|ref|ZP_18879816.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
gi|425729010|gb|EKU91863.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
Length = 252
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 128/295 (43%), Gaps = 50/295 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L+ AD++C QETKL+ + + + GY+ +
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLEQEQADVVCIQETKLQPDQYPEEAL--KGYKHYLY 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 57 SAQ-----KKGYSGVAILSKQE----------PDHVEYGM-------------GMEEY-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D+G + +VY P S D R FK+ + Q+ L
Sbjct: 87 ------DNEGRFIRADYGDISVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVTELRKSRP 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI AID D + + F R W L F D FR+ HPE +
Sbjct: 140 KLILCGDYNICHEAIDIHDPIRNATNSGFLPEEREWMTRFL---DAGFIDTFRALHPELQ 196
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W + N G RID+ + P + + N H + C +L++
Sbjct: 197 E-YTWWSYRFNSRAKNKGWRIDYCMVTEPVRSMLKEARILN-DAVHSDHCPMLLE 249
>gi|310779700|ref|YP_003968032.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
gi|309749023|gb|ADO83684.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
Length = 253
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 112/264 (42%), Gaps = 49/264 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R V + G+ + + + D DI+C QETK ++L ++ GY SFF
Sbjct: 1 MKILSWNVNGIRA-VEKKGAFQDVFEKLDPDILCLQETKASEEQLTDNIKKIPGYYSFFE 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + + K P S + + +
Sbjct: 60 SAV-----KKGYSGVALYSKTK-PLSIKNMGIDI-------------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + +F L N Y P + E R+++KL F L L+ G
Sbjct: 88 -----FDDEGRYIEAKFENFTLINCYFPNS-QEKGKRLEYKLNFCSDLLDYCNSLVENGE 141
Query: 181 RIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
I + GD NIA ID + P F E R W L + D+FR +P
Sbjct: 142 NIVLCGDYNIAHQEIDLKNPKSNTKNPGFLPEE-REWMSKFL---NSGYIDIFRYLYPNE 197
Query: 236 REAYTCWPSNTGAEQFNYGTRIDH 259
+ YT W A + N G RID+
Sbjct: 198 IK-YTWWSYRFKAREKNIGWRIDY 220
>gi|169787480|gb|ACA80179.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787414|gb|ACA80146.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|190347850|gb|EDK40199.2| hypothetical protein PGUG_04297 [Meyerozyma guilliermondii ATCC
6260]
Length = 543
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 143/334 (42%), Gaps = 74/334 (22%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDS----FDADIICFQETKLRRQELKSDLV-MAD 53
+++VT+NVNG++ + ++ D+ ADI+ QE KL Q L S +
Sbjct: 21 LRLVTFNVNGVKTIFNYHPWNGHKQCFDTSLQYLKADIVSLQELKLTAQNLSSTKIGNTQ 80
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP-----VAAEEGFTGLL---E 105
Y SF S +T + GYSGV F R+ P + + L AEEG TG L +
Sbjct: 81 KYRSFVSVPKT----KKGYSGVGLFVRI--PNENEDAVLKKNLSVAKAEEGLTGYLFSPD 134
Query: 106 TSGSKIME-GLE--------DFSKDELLKIDSEGRCV-ITDHGHFILFNVYGPRADSEDT 155
GS+ E +E D + K+DSEGRC+ + I+F++Y P A+S T
Sbjct: 135 KKGSRYRELAVEECIGCYPTDIDDETCSKLDSEGRCISVQLASGLIIFSLYCP-ANSSGT 193
Query: 156 VRIQF-KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-------------- 200
+ +L F VL +R + L +G + ++GD+N+A ID D
Sbjct: 194 EEGEIQRLLFLRVLLERCKRLEEKGNEVIIMGDINVALDLIDHADYMRESFKQGTLKHSL 253
Query: 201 -----GPDFAKNEFR--IWFR------------------SMLVESGGS--FFDVFRSKHP 233
G + K + F+ SMLV + +D R
Sbjct: 254 NSSGDGSELEKLNLAECLKFKDSTPARSLLNAYVHPSSESMLVANSSKQFLYDTTREVQK 313
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
R YT W + TGA Q N+G+RID IL + L
Sbjct: 314 RRLGMYTVWNTLTGARQSNFGSRIDLILTSSKAL 347
>gi|189466093|ref|ZP_03014878.1| hypothetical protein BACINT_02463 [Bacteroides intestinalis DSM
17393]
gi|189434357|gb|EDV03342.1| exodeoxyribonuclease III [Bacteroides intestinalis DSM 17393]
Length = 254
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 126/298 (42%), Gaps = 54/298 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + L + L+ AD++C QETKL+ + + + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVGK--GLPEWLEQEQADVVCIQETKLQPDQYPEEALSALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKRE----------PDHVEYGM-------------GMEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + Q+ L
Sbjct: 89 ------DNEGRFIRADFGDISVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVTGLRKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI ID D + + F R W L F D FR HPE++
Sbjct: 142 KLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDTFRLLHPEQQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC---AGPCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W + N G RID+ + P L + L H + C +L+D
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVTELVRPLLREARILND----AVHSDHCPMLLD 251
>gi|203287972|ref|YP_002222987.1| exodeoxyribonuclease III [Borrelia recurrentis A1]
gi|201085192|gb|ACH94766.1| exodeoxyribonuclease III [Borrelia recurrentis A1]
Length = 254
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 117/266 (43%), Gaps = 48/266 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M ++++NVNG+R VS G L + + DI+C QETK +++L +L+ +GY S+FS
Sbjct: 2 MNLISWNVNGIRA-VSNKGFL-NFIAEYSPDILCLQETKALKEQLPRELIDIEGYYSYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + +++ P+ E +E F
Sbjct: 60 KSIIK-----GYSGVAIYSKIE----------PIKLEN--------------MNIEIF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGRC+I + FIL N Y P + S R+ +KL+F + + G+
Sbjct: 89 ------DREGRCIIAHYHDFILINAYFPNSQSLRK-RLNYKLEFLMSFESIANSFVTSGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPERR 236
+ V GD NIA ID + F + W + L + D FR + E
Sbjct: 142 NLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFL---NRGYVDTFRMFNKEPG 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
YT W T A + N G RID+ +
Sbjct: 199 N-YTWWDYKTRARERNVGWRIDYFVI 223
>gi|304314422|ref|YP_003849569.1| DNA lyase [Methanothermobacter marburgensis str. Marburg]
gi|302587881|gb|ADL58256.1| predicted DNA lyase [Methanothermobacter marburgensis str. Marburg]
Length = 257
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 118/266 (44%), Gaps = 47/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L +D DI+C QETK ++L L +GY SFF+
Sbjct: 4 IKIISWNVNGLRA-VYRKGFLDWFMDE-KPDILCLQETKASPEQLPRRLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + R+ P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTRIP----------PKSIREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + D F+L+N+Y P D R+++KL+F+ + GR
Sbjct: 92 ------DIEGRIQVADFDDFLLYNIYFPNGKMSDE-RLKYKLEFYDAFLEDVNRERDAGR 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ GD N A ID + + F R W +E+G + D FR + E
Sbjct: 145 NTVICGDFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNNESG 201
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
+ YT W T A + N G R+D+
Sbjct: 202 Q-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|169787476|gb|ACA80177.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|158522569|ref|YP_001530439.1| exodeoxyribonuclease III [Desulfococcus oleovorans Hxd3]
gi|158511395|gb|ABW68362.1| exodeoxyribonuclease III [Desulfococcus oleovorans Hxd3]
Length = 262
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 122/267 (45%), Gaps = 48/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+V++NVNGLR + + + + DAD++ QETKL+ ++ D+ +GY S+++
Sbjct: 6 IKLVSWNVNGLRAVMGK--GFLETFKNLDADVVGIQETKLQAPQVTGDMANIEGYTSYWA 63
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T + GYSGVA F R +PV + TG+ G E++
Sbjct: 64 HATT----KKGYSGVAAFSR-----------MPVKNAK--TGM----------GREEY-- 94
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD-SEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D+EGR V D G FI FN+Y P ED R+ +KL F+ + QG
Sbjct: 95 ------DNEGRIVELDLGDFIFFNIYFPNGQMGED--RLTYKLDFYRDFFAYADAYRKQG 146
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 235
R + + GD N A ID + + + F R W + S + D FR +P+
Sbjct: 147 RSLVICGDYNTAHNEIDLKNPKANENTSGFMRIERDWLDKI---SADGYVDTFRHLYPDT 203
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILC 262
+ Y+ W A + N G RID+
Sbjct: 204 VK-YSWWTYRFKARERNVGWRIDYFFV 229
>gi|399573824|gb|AFP49251.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 239
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G+ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWNVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL-----ETSGSKIMEGLEDFS---KDEL------LKIDSE 129
P+ AEEG TG+L TS + E + +D+L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNTSTSFRDLPEAQQIGGYPRRDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ + GDLN
Sbjct: 110 GRCVVIEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|169787330|gb|ACA80104.1| putative DNA lyase [Colletotrichum cereale]
gi|169787412|gb|ACA80145.1| putative DNA lyase [Colletotrichum cereale]
gi|169787430|gb|ACA80154.1| putative DNA lyase [Colletotrichum cereale]
gi|169787458|gb|ACA80168.1| putative DNA lyase [Colletotrichum cereale]
gi|169787470|gb|ACA80174.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787232|gb|ACA80055.1| putative DNA lyase [Colletotrichum cereale]
gi|169787440|gb|ACA80159.1| putative DNA lyase [Colletotrichum cereale]
gi|169787442|gb|ACA80160.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ L R L+ G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|15899057|ref|NP_343662.1| exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|284175276|ref|ZP_06389245.1| exodeoxyribonuclease [Sulfolobus solfataricus 98/2]
gi|384432650|ref|YP_005642008.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
gi|13815592|gb|AAK42452.1| Exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|261600804|gb|ACX90407.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
Length = 247
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 144/327 (44%), Gaps = 85/327 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NGLR + + +L L+S DI+ FQET R + D +M GYE
Sbjct: 1 MKIVSWNINGLRSALKK--NLVNFLESNTFDIVMFQET--RGDIVPLDFIMM-GYEVISF 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R R GYSGV T ++K P+ K+++GL
Sbjct: 56 PAR-----RKGYSGVMTLTKIK----------PI---------------KVIKGL----- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC--Q 178
++ + D EGR V + F L N Y PRA ++ R+ FKL+F + ++ FLL +
Sbjct: 81 -QIKEFDDEGRTVSLELKDFYLINAYFPRA-GDNLERLDFKLKFNNGIE---NFLLKLRE 135
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + + GD NIA +ID + P + R WF +L F D FR HP R
Sbjct: 136 VKPVILCGDFNIAHQSIDAAFSDPKIPGLTPQERAWFTHLL---SLGFIDTFRYLHPNVR 192
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+ Y+ W A + N G R+D+ + + +L+ + DIL D
Sbjct: 193 K-YSWWSYMGNAREKNLGLRLDYCIVS-------EELKD------SIKMADILTD----- 233
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL 323
++GSDHAP+ + L
Sbjct: 234 --------------VQGSDHAPIILEL 246
>gi|149200232|ref|ZP_01877254.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
gi|149136674|gb|EDM25105.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
Length = 258
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 126/268 (47%), Gaps = 58/268 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNG+R V + G + L+ S+DAD+IC QETK +++L +L+ Y S++
Sbjct: 3 VKLISWNVNGIRA-VEKKGFV-DLMQSWDADVICLQETKAHKEQLSDELINIGNYTSYWH 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYS VA + R++ P+ EG G+E+F
Sbjct: 61 SGE-----KKGYSSVAIYSRIE----------PIRVIEGL-------------GIEEF-- 90
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF----FHVLQKRWEFLL 176
D EGR +I ++ F LF VY P A +E RI ++L+F L++++
Sbjct: 91 ------DREGRVIIAEYSDFYLFGVYFPNAQAE-LKRIDYRLEFGDALIEQLKEKYSDKA 143
Query: 177 CQGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
C + GD N+A AID + P ++ E R W L F +F ++
Sbjct: 144 C-----VLCGDFNVAHKAIDLKNPKANEKNPGYSIQE-RNWMDKFLAAGHVDTFRMF-NQ 196
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDH 259
+P+ Y+ W GA N G RID+
Sbjct: 197 NPDE---YSWWSYRGGARSRNVGWRIDY 221
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNAFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR V + F L NVY P +A S + R+ ++++F L+ L
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKA-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A + G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 127/271 (46%), Gaps = 58/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F +ADI C QETKL+ +++ +L DGY
Sbjct: 1 MKLISWNVNGLRACVK-----KGFLDFFHEQNADIFCLQETKLQEGQIELEL---DGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F + K P++ G G LE+
Sbjct: 53 FWNYAL-----KKGYSGTAVFTKQK----------PISVRYG-VGELES----------- 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ EGR + + F L NVY A D R+ +L++ L+ E+LL
Sbjct: 86 ---------EDEGRIITLEFDSFYLVNVYTINA-KRDLSRLPERLEWEDALK---EYLLD 132
Query: 178 QGRRIFVV--GDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 232
R VV GDLN+A A +D +A + + F + R + L+ESG F D FR +
Sbjct: 133 LDRHKPVVYCGDLNVAHAEVDLKNARSNHGNSGFTLEERGKMTTLLESG--FIDSFRYLY 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
PER +A+T W N G RID+ + +
Sbjct: 191 PERTDAFTWWSYMRDVRARNIGWRIDYFIVS 221
>gi|169787288|gb|ACA80083.1| putative DNA lyase [Glomerella tucumanensis]
Length = 233
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 27/190 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGDVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCD 199
+ +D C+
Sbjct: 168 VIRDEMDTCN 177
>gi|169787228|gb|ACA80053.1| putative DNA lyase [Glomerella tucumanensis]
gi|169787280|gb|ACA80079.1| putative DNA lyase [Glomerella tucumanensis]
Length = 233
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 27/190 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLSGDVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCD 199
+ +D C+
Sbjct: 168 VIRDEMDTCN 177
>gi|323306058|gb|EGA59792.1| Apn2p [Saccharomyces cerevisiae FostersB]
Length = 404
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 155/409 (37%), Gaps = 97/409 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
SLR + D F ADII FQE K + + S DG+ SF S +T R GYSGV +
Sbjct: 4 SLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDGFYSFISIPQT----RKGYSGVGCWI 58
Query: 80 RVKSPFSSTEVALPVA-AEEGFTGLLETSGSK---------IMEGL-------EDFSKDE 122
R+ AL V AEEG TG L K + +G+ D +
Sbjct: 59 RIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSAISYRNDVNQGIGGYDSLDPDLDEKS 118
Query: 123 LLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 181
L++DSEGRCV+ + ++ +VY P + F+++F VL +R L G++
Sbjct: 119 ALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNLDKIGKK 178
Query: 182 IFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNEFRIWFR 214
I ++GD+N+ ID D F+ R F
Sbjct: 179 IVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTPHRRIFN 238
Query: 215 SMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
+L +S G D R R + YT W NYG+RID IL
Sbjct: 239 QILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFILV---- 294
Query: 267 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
S C + DIL D + GSDH PVY L V
Sbjct: 295 --------SLKLERC-IKTADILPD-------------------ILGSDHCPVYSDLDIV 326
Query: 327 -----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 370
P Q + P +RY +R ++ + K++ K+ K+
Sbjct: 327 DDRIEPGTTQVAIPKFEARYKYNLR--NHDVLEMFAKKDTNKESNKQKY 373
>gi|399573820|gb|AFP49249.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573822|gb|AFP49250.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 233
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L ++V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDEMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L++ + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 138/326 (42%), Gaps = 79/326 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V++ + DAD C QETKL+ ++K L + + Y F+
Sbjct: 1 MKFVSWNVNGLRASVNK--GFLDYFNEMDADFFCLQETKLQEGQIK--LELGEAYHLFWH 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ G G ED
Sbjct: 57 YAE-----KKGYSGTAIFTKHK----------PLSISYGL-------------GEED--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + ++ +F L VY P A D R+ F+L + + + + L + +
Sbjct: 86 -----EDTEGRVITLEYENFYLVTVYTPNA-RRDLSRLDFRLAWEEMF-RGYLIKLDEHK 138
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERRE 237
+ V GDLN+A ID +A + + F R + L+++G F D FR +P+R +
Sbjct: 139 PVIVCGDLNVAHQDIDLKNAKSNRGNSGFTDEEREKMTRLLDAG--FIDSFRYLYPDRTD 196
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 297
AYT W + N G RID+ L + R P
Sbjct: 197 AYTWWSFMPKIRERNVGWRIDYFLASA-----------------------------RLAP 227
Query: 298 GNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ G+ +++ GSDH PV + L
Sbjct: 228 AIV---EAGIDSQILGSDHCPVVLTL 250
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 118/269 (43%), Gaps = 53/269 (19%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
KIVT+NVNG+R + G + ++ DAD+ C QETK ++L ++ GY+S+F
Sbjct: 96 KIVTWNVNGIRSWLKNGG--LEYIEEEDADVYCLQETKCSEEKLPPEVTNYKGYKSYFLA 153
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSGV R P+ E G +
Sbjct: 154 G-----DKEGYSGVGIMSR----------KTPLNVEYGLS-------------------- 178
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 181
L + DSEGR + + F L N Y P A VR+ ++L + +K + L + +
Sbjct: 179 -LEEHDSEGRVITLEFEEFFLVNSYVPNA-GRGLVRLDYRLTWDRDFRK-YLVGLKKKKS 235
Query: 182 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GDLN+A ID + +AG F + E R +L E F D FR +PE
Sbjct: 236 VILTGDLNVAHNEIDLKNPKTNKKNAG--FTEEE-RQGLTDLLEE---GFVDTFRKLYPE 289
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCA 263
R AYT W A N G R+D+ + +
Sbjct: 290 REGAYTFWTYMMNARAKNVGWRLDYFIVS 318
>gi|344200944|ref|YP_004785270.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrivorans SS3]
gi|343776388|gb|AEM48944.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrivorans SS3]
Length = 253
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 133/325 (40%), Gaps = 75/325 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + L + + D++C QE+K L + + +GY+S ++
Sbjct: 1 MRLYSWNVNGWRAACRK--GLGHWVAATQPDVLCIQESKADPDRLPAAETVLEGYDSQWA 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R+GYSGV TF + +T + +P
Sbjct: 59 VAE-----RSGYSGVTTFSKAPCRPVATGLGIP--------------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ D EGR +ITD G F L+NVY P +DT R+ FKL F+ + + GR
Sbjct: 87 ----RFDREGRVLITDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVATGR 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ GD+N A AID + + F R+ L + + D FR HP+ Y
Sbjct: 142 AVVFCGDVNTAHQAIDLARPKENTKISGFLPEERACLDQWVAAGWVDSFRHLHPD-SITY 200
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
+ W T A N G R+D+ +H+
Sbjct: 201 SWWSQRTNARARNIGWRLDYFW-----IHESL---------------------------- 227
Query: 300 APRWKG-GMSTRLEGSDHAPVYMCL 323
PR +G G++T + GSDH PV++ L
Sbjct: 228 LPRLRGAGIATDVTGSDHCPVWLEL 252
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 120/266 (45%), Gaps = 48/266 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + + DAD C QETKL QE + DL + +GY +++
Sbjct: 1 MKFISWNVNGLRAAVKK--GFLDVFNQLDADFFCLQETKL--QEGQIDLPL-EGYTQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P S + L G+E+
Sbjct: 56 YAE-----KKGYSGTAIFA--KQPALSVQYGL---------------------GIEE--- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
+D EGR + ++ F L Y P A SE RI F+LQ+ + E+L L +
Sbjct: 85 -----LDHEGRLITLEYPEFYLVTCYTPNAQSE-LKRIDFRLQWEAAFR---EYLHQLDE 135
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERRE 237
+ + + GDLN+A ID + P+ K F R+ E + F D FR +PE
Sbjct: 136 KKPVIICGDLNVAHQNIDLKNWRPNRGKAGFSDEERNAFTELLNTGFTDTFRYLYPETTG 195
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
Y+ W A + N G RID+ L +
Sbjct: 196 VYSWWSYRFHARENNAGWRIDYFLVS 221
>gi|169787332|gb|ACA80105.1| putative DNA lyase [Colletotrichum cereale]
gi|169787334|gb|ACA80106.1| putative DNA lyase [Colletotrichum cereale]
gi|169787336|gb|ACA80107.1| putative DNA lyase [Colletotrichum cereale]
gi|169787338|gb|ACA80108.1| putative DNA lyase [Colletotrichum cereale]
gi|169787340|gb|ACA80109.1| putative DNA lyase [Colletotrichum cereale]
gi|169787342|gb|ACA80110.1| putative DNA lyase [Colletotrichum cereale]
gi|169787344|gb|ACA80111.1| putative DNA lyase [Colletotrichum cereale]
gi|169787352|gb|ACA80115.1| putative DNA lyase [Colletotrichum cereale]
gi|169787410|gb|ACA80144.1| putative DNA lyase [Colletotrichum cereale]
gi|169787416|gb|ACA80147.1| putative DNA lyase [Colletotrichum cereale]
gi|169787418|gb|ACA80148.1| putative DNA lyase [Colletotrichum cereale]
gi|169787438|gb|ACA80158.1| putative DNA lyase [Colletotrichum cereale]
gi|169787444|gb|ACA80161.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787478|gb|ACA80178.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|307721179|ref|YP_003892319.1| exodeoxyribonuclease III [Sulfurimonas autotrophica DSM 16294]
gi|306979272|gb|ADN09307.1| exodeoxyribonuclease III [Sulfurimonas autotrophica DSM 16294]
Length = 258
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 132/323 (40%), Gaps = 79/323 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNG+R ++ K +D D I+C QE K +++++ +L +E FS
Sbjct: 5 IEIISWNVNGIRAVANK--EALKWIDERDTGILCLQEIKAQKEQIPDNL-----FEKEFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSG AT+ +KS ++ST ++T
Sbjct: 58 EVIINSGERKGYSGTATYSMLKSDYTST------------CNDIDTK------------- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
EGR + T +G +LFNVY P +D R+ +K++F+ E L +G+
Sbjct: 93 -------HEGRIIETHYGDIVLFNVYFPNG-QKDEERLAYKMKFYDDFLAYCEQLKDEGK 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I V GD+N A ID + + + F R W L + D FR H ++
Sbjct: 145 SIIVCGDVNTAHREIDLKNPKANSKTSGFLPIEREWIDKFL---NHGYIDTFRYVHGDKE 201
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+AY+ W A N G RID+ + D ++DY
Sbjct: 202 DAYSWWSYRFNARVKNVGWRIDYFFISEDLAENLEDA--------------FILDY---- 243
Query: 297 PGNAPRWKGGMSTRLEGSDHAPV 319
+EGSDH P+
Sbjct: 244 --------------IEGSDHCPI 252
>gi|386859763|ref|YP_006272469.1| Exodeoxyribonuclease III [Borrelia crocidurae str. Achema]
gi|384934644|gb|AFI31317.1| Exodeoxyribonuclease III [Borrelia crocidurae str. Achema]
Length = 254
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 117/266 (43%), Gaps = 48/266 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M ++++NVNG+R VS G L + + DI+C QETK +++L +L+ +GY S+FS
Sbjct: 2 MNLISWNVNGIRA-VSNKGFL-NFIAEYSPDILCLQETKALKEQLPRELIDIEGYYSYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + +++ P+ E +E F
Sbjct: 60 KSIIK-----GYSGVAIYSKIE----------PIKLEN--------------MNIEIF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGRC+I + FIL N Y P + S R+ +KL+F L+ + +
Sbjct: 89 ------DREGRCIIAHYHDFILINAYFPNSQSLRK-RLNYKLEFLMSLESIANAFVTSEK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPERR 236
+ V GD NIA ID + F + W + L + D FR + E
Sbjct: 142 NLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFL---NRGYVDTFRMFNKEPG 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
YT W T A + N G RID+ +
Sbjct: 199 N-YTWWDYKTRARERNVGWRIDYFVI 223
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 124/276 (44%), Gaps = 46/276 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR + + + ++ DAD C QETKL+ ++ DL + D Y+ +
Sbjct: 1 MKFISWNVNGLRAVLKK--NFLEVFTDLDADFFCLQETKLQAGQV--DLDLPDYYQYW-- 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F + K P+A +G GL +F
Sbjct: 55 ----NYAQKKGYSGTAIFTKKK----------PLAVTKGL-------------GLAEF-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLLCQG 179
D EGR + ++ F L N Y P +S+D + R+ F+LQ+ L +
Sbjct: 86 ------DQEGRVLTLEYEDFYLVNCYTP--NSQDKLKRLDFRLQWEAAFSDHLTNLATK- 136
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR-SMLVESGGSFFDVFRSKHPERREA 238
+ + + GDLN+A ID + P+ F I R +M F D FR + ++ A
Sbjct: 137 KPVILCGDLNVAHNEIDLKNPKPNQKNAGFSIQERQAMTALLARGFTDTFRHIYLDKTGA 196
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 274
Y+ W A N G RID+ +C+ L Q D Q
Sbjct: 197 YSWWSYRFNARARNAGWRIDYFICSNALLPQVKDSQ 232
>gi|169787346|gb|ACA80112.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEXQQIGGYPRPDQLPGELDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 127/273 (46%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR +++ + +S +AD+ C QE+K++R++ + D YE +++
Sbjct: 1 MRLISWNVNGLRACMNK--GFMEFFNSVNADVFCIQESKMQREQAEFDF---PNYEEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA F ++K P S E + +A
Sbjct: 56 SAE-----KKGYSGVAIFSKIK-PL-SVEYDMGIAHH----------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F L NVY P + E R+++++++ F K E
Sbjct: 86 ------DKEGRIITAEFSDFYLVNVYTPNSKRE-LERLEYRMEWEDDFRTFLKNLE---- 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F E S L++SG F D +R
Sbjct: 135 SKKPVIVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSALLDSG--FTDTYRH 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE++ AYT W A N G RID+ LC+
Sbjct: 189 FYPEKQGAYTWWSYMGKARANNTGWRIDYFLCS 221
>gi|50308837|ref|XP_454423.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643558|emb|CAG99510.1| KLLA0E10473p [Kluyveromyces lactis]
Length = 499
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 153/374 (40%), Gaps = 91/374 (24%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ VT+NVNG+R + SL+ + F ADI+ QE K+ + + S +G
Sbjct: 10 VRFVTFNVNGVRTLFQHYPFSRMNNSLKLAFELFQADIVTLQELKIDAKSI-SKWGKVEG 68
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKI-- 111
Y+S+ + ++ R GYSGV + R S L V AEEG TGLL + I
Sbjct: 69 YQSYITISQK----RKGYSGVGCWIRTPSEDDPLRHHLKVIKAEEGITGLLRVQANGISY 124
Query: 112 ---------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFK 161
GL+ +++LL IDSEGRC+I + + ++F+ Y P S+ +
Sbjct: 125 RESSEGIGGYTGLDFADENDLLDIDSEGRCIIIELACNVVIFSTYCPANSSQTEEGELSR 184
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD------------------ 203
L F +L KR L G+ + ++GD+N+ D A +
Sbjct: 185 LTFLKLLFKRIRNLHGLGKHVVLMGDINVCRDLKDHATALDESSISLSQQKTGSEIEEKF 244
Query: 204 ------FAKNEFRIWFR---SMLVES-------GGSFFDVFRS-KHPERREAYTCWPSNT 246
F + RI R +ML +S G D R + +R + YT W +
Sbjct: 245 NEKCVQFIMDPSRIGRRLLNTMLCDSIISKYAQEGILVDSTRKIQGRDRLKMYTVWNTLL 304
Query: 247 GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG 306
NYG+R+D+I + + ++ + DIL
Sbjct: 305 NTRPVNYGSRVDYIFVSKG-------------LKDNITDGDIL----------------- 334
Query: 307 MSTRLEGSDHAPVY 320
T + GSDH PV+
Sbjct: 335 --TTIMGSDHCPVF 346
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 570 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 622
M P+C+ H E V RV K +FG++F+VC R++G +PEA+CG+F+W
Sbjct: 448 MLGKAPVCE-HGEEAVLRV-SKTDKSFGKKFWVCNRSKGEKDDPEASCGFFQW 498
>gi|392401590|ref|YP_006438202.1| exodeoxyribonuclease III Xth [Turneriella parva DSM 21527]
gi|390609544|gb|AFM10696.1| exodeoxyribonuclease III Xth [Turneriella parva DSM 21527]
Length = 270
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 125/282 (44%), Gaps = 46/282 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNG+R + + G L KLL + DI+ QE K + +L L+ DGYE+ +
Sbjct: 14 MRIASFNVNGIRA-IEKKGELVKLLAAEKPDIVFLQEIKAKPDQLSDALLKPDGYEAHYH 72
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG R +GL + +++ G+ D++
Sbjct: 73 SAE-----KPGYSGTGVLVR--------------------SGLF--AKMQVLRGMPDWN- 104
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + + G ++F Y P D + KL F+ + L + +
Sbjct: 105 ------DHEGRVLGVEAGDLVIFGNYFPNGGKSDAAWRE-KLVFYDHFHQYIAALRKKKK 157
Query: 181 RIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
R+ GDLN+A ID + F E R W ++ + ++ DVFRS++PE
Sbjct: 158 RVLFTGDLNVAHNPIDLARPKENEKHVGFLPEE-RAWVDRLVAD---NWVDVFRSRYPE- 212
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
+YT W + A + N G RID+ + P + +++ N
Sbjct: 213 TVSYTWWQMQSRARERNIGWRIDYFIVDKPLYPKVREIRHLN 254
>gi|317476209|ref|ZP_07935460.1| exodeoxyribonuclease III [Bacteroides eggerthii 1_2_48FAA]
gi|316907620|gb|EFV29323.1| exodeoxyribonuclease III [Bacteroides eggerthii 1_2_48FAA]
Length = 254
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 130/298 (43%), Gaps = 54/298 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GLPEWLANEQPDVLCLQETKLQPEQYPAEALDALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 59 SAR-----KKGYSGVAILTKRE----------PDHVEYGM-------------GMEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR + D+G + +VY P S D R FK+ + ++ L
Sbjct: 89 ------DSEGRFMRADYGDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFRQYVVELQRTRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI AID D + + F R W L E F D FR HP+++
Sbjct: 142 KLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFLNE---GFIDTFRLLHPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC---AGPCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W + N G RID+ + P L L H + C ++++
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVNESVRPMLKDARILND----AVHSDHCPMMLE 251
>gi|169787448|gb|ACA80163.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+ V++NVNGLR V++ G+ +S DAD+ C QETKL+ ++ +L + + Y+ F++
Sbjct: 1 MRFVSWNVNGLRACVNK-GAFLPYFESADADVFCIQETKLQAGQI--ELPIGEAYQQFWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F R+ P+ GF G+
Sbjct: 58 YAE-----RKGYSGTAVFTRIT----------PLDVRYGFG-----DGN----------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC--- 177
D EGR + + F + VY P A D R+ ++L+ WE C
Sbjct: 87 ------DPEGRIITLEFPSFYVVTVYTPNA-KRDLSRLPYRLE--------WEDAFCAYL 131
Query: 178 ----QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKH 232
+ + + GDLN+A ID +A + + F R+ + E F D FR+ H
Sbjct: 132 CALDREKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAKMTELLAAGFVDTFRALH 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + YT W + G + N G RID+ L +
Sbjct: 192 PNVTDKYTWWSNMPGVRERNIGWRIDYFLVS 222
>gi|329964785|ref|ZP_08301808.1| exodeoxyribonuclease III [Bacteroides fluxus YIT 12057]
gi|328524636|gb|EGF51699.1| exodeoxyribonuclease III [Bacteroides fluxus YIT 12057]
Length = 254
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 123/273 (45%), Gaps = 53/273 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L D++C QETKL+ ++ +D + + GY +
Sbjct: 1 MKIITYNVNGLRAAVTK--GLPEWLAQEQPDVLCLQETKLQPEQYPADALDSLGYRHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTRRE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D+G + +VY P S D R FK+ + L+K E++L R
Sbjct: 89 ------DNEGRFIRADYGDLSVVSVYHPSGTSGDE-RQAFKMVW---LEKFQEYVLELQR 138
Query: 181 ---RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
++ + GD NI ID D + + F R W L F D FR HP
Sbjct: 139 TRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDSFRLLHP 195
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
+++E YT W + N G RID+ + + P
Sbjct: 196 DKQE-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|169787284|gb|ACA80081.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 142/329 (43%), Gaps = 86/329 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNG+R V + +D F DADI C QE+KL QE + +L++ +GY
Sbjct: 1 MKLVSWNVNGIRACVK-----KGFMDYFKEVDADIFCIQESKL--QEGQIELIL-EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S + GL D
Sbjct: 53 YWNYAI-----KKGYSGTAVFTK-KEPLS------------------------VRYGLGD 82
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ + EGR + ++ F L NVY P + D R+ ++L++ ++ E+LL
Sbjct: 83 N------ETEPEGRILTLEYEGFYLVNVYTPNS-QRDLARLPYRLEWEERIR---EYLLG 132
Query: 178 --QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPE 234
Q + + + GDLN+A ID +A + + F R + GS F D FR K+PE
Sbjct: 133 LDQIKPVIMCGDLNVAHFEIDLKNAKSNRGNSGFTDEERGKMTRLLGSGFVDAFRYKYPE 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
AYT W + N G RID+ + + + D Q H CDI+
Sbjct: 193 AEGAYTWWSYMAKVRERNIGWRIDYFIVSEKLKERILDSQIH---------CDIM----- 238
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
GSDH PV + L
Sbjct: 239 ------------------GSDHCPVALEL 249
>gi|294495018|ref|YP_003541511.1| exodeoxyribonuclease III [Methanohalophilus mahii DSM 5219]
gi|292666017|gb|ADE35866.1| exodeoxyribonuclease III [Methanohalophilus mahii DSM 5219]
Length = 244
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 105/244 (43%), Gaps = 45/244 (18%)
Query: 25 LDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSP 84
L S DI+C QETK R +L ++ DGY S+FS R GYSGVA + +V+
Sbjct: 13 LTSESPDILCLQETKARPSQLPPNIRRIDGYYSYFSAAE-----RKGYSGVALYSKVQ-- 65
Query: 85 FSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFN 144
P GF G+ F D EGR +I HF+LFN
Sbjct: 66 --------PQEVRYGF-------------GINRF--------DHEGRILIAFFDHFVLFN 96
Query: 145 VYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF 204
+Y P +S D R+Q+K+ F+ + + L +G + V GDLN A AID +
Sbjct: 97 IYFPNGNSSDE-RLQYKMDFYGAFLEYTQELRQEGYSVVVCGDLNTAHKAIDIARPKQNE 155
Query: 205 AKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
++ F R W L F D FR + E YT W T A N G R+D+
Sbjct: 156 KRSGFLPVEREWIDKFLSH---GFLDTFRLFNEEEGN-YTWWDLKTRARDRNVGWRLDYF 211
Query: 261 LCAG 264
+
Sbjct: 212 FVSA 215
>gi|389581306|ref|ZP_10171333.1| exodeoxyribonuclease III [Desulfobacter postgatei 2ac9]
gi|389402941|gb|EIM65163.1| exodeoxyribonuclease III [Desulfobacter postgatei 2ac9]
Length = 263
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 132/328 (40%), Gaps = 78/328 (23%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
+K++++NVNG R + + F S+ + D DI+ QETKL+ + ++ YESF
Sbjct: 7 LKLISWNVNGFRAVLKKDFFDSVTGM----DPDILMLQETKLQEDQRSDQMIRFGDYESF 62
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ + + GYSGV ++ R+ +T+ P
Sbjct: 63 WNYSTV----KKGYSGVVSYTRIAPETVTTQFGKP------------------------- 93
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
+ D EGR + D FILFN+Y P D R+ +KL F+ + L +
Sbjct: 94 ------EYDGEGRIIRMDFEPFILFNIYFPNGQMSDE-RLSYKLGFYDWFLDYAQKLRDE 146
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPER 235
G + V GD N A ID + P+ ++ F R +L V G + D FR +PE
Sbjct: 147 GNSLIVTGDFNTAHNEIDLKNPAPNAKRSGFLRIERDILDKMVNMG--YVDTFRHFYPEA 204
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
E Y+ W A + N G RID+ DL +N V + DI
Sbjct: 205 VE-YSWWSYRFNARKNNAGWRIDYFFVT-------RDLIENNIVKDAFIDNDIF------ 250
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
GSDH PV + +
Sbjct: 251 -----------------GSDHCPVGLVV 261
>gi|290789945|pdb|3FZI|A Chain A, 1.9 Angstrom Structure Of The Thermophilic Exonuclease Iii
Homologue Mth0212
gi|290789950|pdb|3G0A|A Chain A, Mth0212 With Two Bound Manganese Ions
gi|290789955|pdb|3G1K|A Chain A, Mth0212 (Wt) Crystallized In A Monoclinic Space Group
gi|290789956|pdb|3G1K|B Chain B, Mth0212 (Wt) Crystallized In A Monoclinic Space Group
gi|290789957|pdb|3G2C|A Chain A, Mth0212 In Complex With A Short Ssdna (Cgta)
gi|290789958|pdb|3G2C|B Chain B, Mth0212 In Complex With A Short Ssdna (Cgta)
gi|290789969|pdb|3G3C|A Chain A, Mth0212 (Wt) In Complex With A 6bp Dsdna Containing A
Single One Nucleotide Long 3'-Overhang
gi|290789970|pdb|3G3C|B Chain B, Mth0212 (Wt) In Complex With A 6bp Dsdna Containing A
Single One Nucleotide Long 3'-Overhang
gi|290789976|pdb|3G3Y|A Chain A, Mth0212 In Complex With Ssdna In Space Group P32
gi|290789977|pdb|3G3Y|B Chain B, Mth0212 In Complex With Ssdna In Space Group P32
gi|290789979|pdb|3G4T|A Chain A, Mth0212 (Wt) In Complex With A 7bp Dsdna
gi|290789980|pdb|3G4T|B Chain B, Mth0212 (Wt) In Complex With A 7bp Dsdna
Length = 265
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 120/266 (45%), Gaps = 47/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L+ ++ DI+C QE K ++L L +GY SFF+
Sbjct: 4 LKIISWNVNGLRA-VHRKGFLKWFMEE-KPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + +V P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTKVP----------PSSLREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR I D F+L+N+Y P + R+++KL+F+ + GR
Sbjct: 92 ------DTEGRIQIADFDDFLLYNIYFPNGKMSEE-RLKYKLEFYDAFLEDVNRERDSGR 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD N A ID + + F R W +E+G + D FR + +
Sbjct: 145 NVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNSDPG 201
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
+ YT W T A + N G R+D+
Sbjct: 202 Q-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|74316272|ref|YP_314012.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
gi|74055767|gb|AAZ96207.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
Length = 259
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 117/264 (44%), Gaps = 46/264 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I++ N+NG+R ++ L + AD++C QE K + +LK ++ DG F
Sbjct: 1 MRIISANLNGIRSAATK--GFFDWLPTQGADVVCVQELKAQATDLKPEVRQCDGLSGAFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV + R ++P +I+EGL
Sbjct: 59 CAE-----KKGYSGVGVYTR-QAP------------------------QRIVEGL----- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
L + D+EGR + D+G + ++Y P S + R Q K +F E L+ GR
Sbjct: 84 -GLPEFDAEGRYIEADYGDLAVISLYQPSGSSSEE-RQQAKFRFLDAFFPHLEKLVKCGR 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD NIA ID + + + F R W + E G + DV+RS +P
Sbjct: 142 EIIICGDWNIAHQEIDLKNWKSNQKNSGFLPEERAWMTRLFDELG--WVDVYRSLYPAHT 199
Query: 237 -EAYTCWPSNTGAEQFNYGTRIDH 259
EAYT W + A N G RID+
Sbjct: 200 GEAYTWWSNRGQAWAKNVGWRIDY 223
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P + + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLNVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ +L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK-----VLE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A + G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|15678240|ref|NP_275355.1| exodeoxyribonuclease [Methanothermobacter thermautotrophicus str.
Delta H]
gi|2621258|gb|AAB84718.1| exodeoxyribonuclease [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 257
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 120/266 (45%), Gaps = 47/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L+ ++ DI+C QE K ++L L +GY SFF+
Sbjct: 4 LKIISWNVNGLRA-VHRKGFLKWFMEE-KPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + +V P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTKVP----------PSSLREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR I D F+L+N+Y P + R+++KL+F+ + GR
Sbjct: 92 ------DTEGRIQIADFDDFLLYNIYFPNGKMSEE-RLKYKLEFYDAFLEDVNRERDSGR 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD N A ID + + F R W +E+G + D FR + +
Sbjct: 145 NVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNSDPG 201
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
+ YT W T A + N G R+D+
Sbjct: 202 Q-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 128/276 (46%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P + + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLNVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P +A S + R+ ++++F L+ +L
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK-----VLE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P + +AYT W A + G RID+ LC+ P
Sbjct: 188 YFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|290789984|pdb|3G91|A Chain A, 1.2 Angstrom Structure Of The Exonuclease Iii Homologue
Mth0212
Length = 265
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 123/267 (46%), Gaps = 49/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L+ ++ DI+C QE K ++L L +GY SFF+
Sbjct: 4 LKIISWNVNGLRA-VHRKGFLKWFMEE-KPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + +V P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTKVP----------PSSLREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPR-ADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D+EGR I D F+L+N+Y P A SE+ R+++KL+F+ + G
Sbjct: 92 ------DTEGRIQIADFDDFLLYNIYFPNGAMSEE--RLKYKLEFYDAFLEDVNRERDSG 143
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 235
R + + GD N A ID + + F R W +E+G + D FR + +
Sbjct: 144 RNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNSDP 200
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILC 262
+ YT W T A + N G R+D+
Sbjct: 201 GQ-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|169787282|gb|ACA80080.1| putative DNA lyase [Glomerella tucumanensis]
Length = 233
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 27/190 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKVQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPLRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLSGDVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCD 199
+ +D C+
Sbjct: 168 VIRDEMDTCN 177
>gi|169787220|gb|ACA80049.1| putative DNA lyase [Colletotrichum cereale]
gi|169787222|gb|ACA80050.1| putative DNA lyase [Colletotrichum cereale]
gi|169787366|gb|ACA80122.1| putative DNA lyase [Colletotrichum cereale]
gi|169787368|gb|ACA80123.1| putative DNA lyase [Colletotrichum cereale]
gi|169787370|gb|ACA80124.1| putative DNA lyase [Colletotrichum cereale]
gi|169787452|gb|ACA80165.1| putative DNA lyase [Colletotrichum cereale]
gi|169787454|gb|ACA80166.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VVRDEMDTCNV 178
>gi|224532103|ref|ZP_03672735.1| exodeoxyribonuclease III [Borrelia valaisiana VS116]
gi|224511568|gb|EEF81974.1| exodeoxyribonuclease III [Borrelia valaisiana VS116]
Length = 255
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 144/334 (43%), Gaps = 89/334 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYAPDILCVQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ P+A +F
Sbjct: 58 KSKIK-----GYSGVCIYSKVE----------PIAV--------------------NFLG 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
E+ D+EGR +I + F+L N Y P + + R+ +KL F ++ + L+ G+
Sbjct: 83 KEIF--DNEGRGIIAYYDDFVLINGYFPNSQALRR-RLVYKLDFLSYIENLIDSLVNGGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFR--SKH 232
+ + GD NIA ID PD ++ E W + L + D FR +K
Sbjct: 140 NVVICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWIDNFL---NKGYVDTFRIFNKE 194
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 292
P YT W TGA + N G RID+ + + F +V + IL
Sbjct: 195 P---GYYTWWNYRTGAREKNMGWRIDYFVV-------------NEFFKRNVKKSLIL--- 235
Query: 293 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
++ GSDH PV++ L +V
Sbjct: 236 ----------------DKVMGSDHCPVFLELADV 253
>gi|169787350|gb|ACA80114.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSTLDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VVRDEMDTCNV 178
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 144/333 (43%), Gaps = 86/333 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + LD F DADI C QETKL QE + + + + Y
Sbjct: 1 MKLISWNVNGLRACVN-----KGFLDYFKASDADIFCVQETKL--QEGQIGIELGEPYRK 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F R++ + G+E+
Sbjct: 54 YWNYAE-----KKGYSGTAIFTRIEP-------------------------QSVRYGMEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ EGR + + F L VY P A D R++++L++ +R+ L
Sbjct: 84 -------DAEPEGRIITLEFESFYLVTVYTPNA-KRDLSRLEYRLEWEERF-RRYLQELD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPE 234
+ + V GDLN+A ID +A + + F R + L+E+G F D FR ++P+
Sbjct: 135 AHKPVIVCGDLNVAHQEIDLKNAKSNQGNSGFTPEERDKMTRLLEAG--FIDTFRHRYPD 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
R +AYT W + N G RID+ L V+ +N D + D K
Sbjct: 193 RTDAYTWWSFMPKVRERNIGWRIDYFL-----------------VSARLN--DFIKDAK- 232
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 327
+ + GSDH PV + + ++P
Sbjct: 233 ------------IDAAITGSDHCPVILEMEDIP 253
>gi|169787372|gb|ACA80125.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 27/187 (14%)
Query: 28 FDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSS 87
+ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 5 LEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR------- 53
Query: 88 TEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSEGRCV 133
P+ AEEG TG+L S + + + + + L +DSEGRCV
Sbjct: 54 NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSEGRCV 113
Query: 134 ITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPA 193
+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN+
Sbjct: 114 VLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLNVIRD 171
Query: 194 AIDRCDA 200
+D C+
Sbjct: 172 EMDTCNV 178
>gi|410100459|ref|ZP_11295420.1| exodeoxyribonuclease III (xth) [Parabacteroides goldsteinii
CL02T12C30]
gi|409215701|gb|EKN08697.1| exodeoxyribonuclease III (xth) [Parabacteroides goldsteinii
CL02T12C30]
Length = 253
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 114/270 (42%), Gaps = 47/270 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + + L D++C QETKL+ + ++ GY+ +
Sbjct: 1 MKIITYNVNGLRAAVGK--GFPEWLKQEQPDVLCLQETKLQPDQFPAEAFADSGYKPYLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R E +I G+E
Sbjct: 59 SAQ-----KKGYSGVAILTR-----------------------QEPDHVEIGMGIE---- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
K D+EGR + D+G + +VY P S D R FK+++ QK L +
Sbjct: 87 ----KYDNEGRFIRADYGDLSIVSVYHPSGTSGDE-RQAFKMEWLEDFQKYVVELQKTRK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L F D FR +PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---DAGFIDTFRHLNPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
+ YT W A + N G RID+ + + P
Sbjct: 199 Q-YTWWSYRFNARKNNKGWRIDYCMVSEPV 227
>gi|320584151|gb|EFW98362.1| AP endonuclease [Ogataea parapolymorpha DL-1]
Length = 602
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 139/333 (41%), Gaps = 68/333 (20%)
Query: 1 MKIVTYNVNGLRQRVSQF-----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++VT+NVNG++ + F + ++L+ + D+I FQE K++R ++ + DGY
Sbjct: 16 LRLVTFNVNGIKTLKNYFPWTLVSNYSQMLNMMNIDVITFQELKVQRPDVDLSIADVDGY 75
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRV---KSPFSSTEVALPVAAEEGFTGLL-------- 104
SF S + + GYSGV + R P + V EEG TG+L
Sbjct: 76 RSFISVPIS----KKGYSGVGVYVRKPRDDEPEILKKCLTVVRVEEGITGILPHQKKHVS 131
Query: 105 --ETSGSKIME-----GLEDFSK--DELLKIDSEGRCVITD-HGHFILFNVYGPRADSED 154
E +++ G D D+ K+DSEGRCVI + + + ++ +VY P
Sbjct: 132 FKEAYSDPVLQPTCIGGYPDHKNMYDKFRKLDSEGRCVIIELNFNIVVISVYCPANSLGT 191
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA------------GP 202
+F+L F L +R L G+++ V+GD+N+ ID D
Sbjct: 192 DEGEEFRLLFLRCLFERARNLRAMGKKVVVMGDINVCVDLIDSDDTIKQGFKERRLVKAQ 251
Query: 203 DFAKNE---------------FRIWFRSMLVESGGS--------FFDVFRSKHPERREAY 239
D++ E R + ++ G DV R K R + Y
Sbjct: 252 DYSDFETLNADQVLAFKHSAPHRELVNQYVKDTTGMRPDGDSHVLHDVVREKQGRRLKMY 311
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA---GPCLHQ 269
T W + N G+RID IL + P + Q
Sbjct: 312 TVWSTFKSNRPLNVGSRIDLILASSQLAPLVSQ 344
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 44/264 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ +++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPEQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L Y P + E R+++++ + + + L + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLEYRMAWEDAF-RNYLLELDKKK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID + + F R+ + E G F D FR +P+ E Y
Sbjct: 138 PVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLYPDAIEQY 197
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
+ W A + N G RID+ + +
Sbjct: 198 SWWSYMGKARERNTGWRIDYFITS 221
>gi|408671145|ref|YP_006871216.1| exodeoxyribonuclease III [Borrelia garinii NMJW1]
gi|407240967|gb|AFT83850.1| exodeoxyribonuclease III [Borrelia garinii NMJW1]
Length = 255
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 85/332 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVQEYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 RSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +I + +F+L N Y P + + R+ +KL F ++ + L+ G+
Sbjct: 87 ------DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYIENLIDSLVNGGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFVV-------------NEFFKRNVKKSLIL----- 235
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
++ GSDH PV++ L +V
Sbjct: 236 --------------EKVMGSDHCPVFLELADV 253
>gi|169787348|gb|ACA80113.1| putative DNA lyase [Colletotrichum cereale]
gi|169787446|gb|ACA80162.1| putative DNA lyase [Colletotrichum cereale]
gi|169787462|gb|ACA80170.1| putative DNA lyase [Colletotrichum cereale]
gi|169787492|gb|ACA80185.1| putative DNA lyase [Colletotrichum cereale]
gi|169787494|gb|ACA80186.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GD+N
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDVN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 127/274 (46%), Gaps = 64/274 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ S +AD+ C QE+K+++++ D GY F++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFTSVNADVFCIQESKMQQEQNTFDF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV T FS TE P+ G G+E+
Sbjct: 56 CAI-----KKGYSGVVT-------FSKTE---PLNVSYGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D+EGR V + F L NVY P RA + R+ ++++F L+ L
Sbjct: 86 ------DTEGRVVTCEFDKFYLVNVYTPNSQRALARLEYRMSWEVEFRKFLKN-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG D + +F S L+ +G F D FR
Sbjct: 135 LQKPVIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKF-----SELLNAG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P + +AYT W A N G RID+ LC+
Sbjct: 188 HFYPTKEKAYTWWSYMQQARDKNIGWRIDYFLCS 221
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 131/285 (45%), Gaps = 68/285 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR ++ + LD F DAD+ C QETK+ Q+ +++L + +GYE
Sbjct: 1 MKLISWNVNGLRACLN-----KGFLDFFQEADADVFCVQETKM--QQGQAELAL-EGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F+ + GYSG A F R+ PV+ G G+ +
Sbjct: 53 FWCSAE-----KKGYSGTAVFTRIP----------PVSVAYGI-------------GIPE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEF 174
F D+EGR + + F L NVY P A T RI F++Q+ F V R
Sbjct: 85 F--------DTEGRVITVEFEKFTLINVYTPNAQRGLT-RIDFRMQWEDAFRVYLLR--- 132
Query: 175 LLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG F+ E + L++SG + D
Sbjct: 133 -LQESKPVVVCGDLNVAHNEIDLKNYKTNRGNAG--FSDEERGK--MTELLQSGLT--DS 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
FR +PE+ YT W A N G RID+ L + Q D
Sbjct: 186 FRYLYPEKTGCYTWWSYMFNARANNAGWRIDYFLTSDVLKDQIED 230
>gi|169787460|gb|ACA80169.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPSEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787328|gb|ACA80103.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPSEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 141/297 (47%), Gaps = 55/297 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+NVNGLR V++ + D+DI QETKL++ +++ D+ GYE ++
Sbjct: 1 MKLVTWNVNGLRACVNK--GFMDFFNEVDSDIFSVQETKLQKGQIEMDI---PGYEEYWD 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG ATF ++K P++ + TGL E E FSK
Sbjct: 56 YAE-----KKGYSGTATFSKIK----------PISVK---TGLEE----------EKFSK 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
EGR + ++ +F L NVY P + +E R+ +++++ + + LC+
Sbjct: 88 --------EGRVITAEYENFYLVNVYTPNSQNE-LKRLDYRMEW----EDYFADYLCELD 134
Query: 181 RI---FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPE 234
++ + GDLN+A ID + + F I R + L++ G F D +R +P+
Sbjct: 135 KVKPVIMCGDLNVAHREIDLKNPKTNKKNAGFTIEERDKMTSLLKRG--FVDSYRYLYPD 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
YT W A + N G RID+ + + + D++ + V + C +L+D
Sbjct: 193 IEGVYTWWSYRFNARKNNAGWRIDYFIVSDRIKDKIKDVKIFSDVMGS-DHCPVLLD 248
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 127/278 (45%), Gaps = 72/278 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +S+ ++ DADI C QETK+ + + L+ GYE +++
Sbjct: 1 MKLISWNVNGLRACLSK--GFEDFFNTADADIFCIQETKMHPDQAEIGLI---GYEKYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S T G I E
Sbjct: 56 SAV-----KKGYSGTAVFTRI-TPLSVT------------------YGLNIEEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-----FL 175
D EGR + + F L NVY P + E +R+ +++ RWE +L
Sbjct: 86 ------DQEGRIITLEFEDFFLVNVYTPNSKRE-LLRLDYRM--------RWEDEFRTYL 130
Query: 176 --LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFF 225
L Q + + + GD+N+A ID R +AG D +++ + L+E+G F
Sbjct: 131 TALDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FT 183
Query: 226 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
D FR +P++ +AYT W A N G RID+ L +
Sbjct: 184 DTFRHIYPDKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|169787234|gb|ACA80056.1| putative DNA lyase [Colletotrichum cereale]
gi|169787236|gb|ACA80057.1| putative DNA lyase [Colletotrichum cereale]
gi|169787238|gb|ACA80058.1| putative DNA lyase [Colletotrichum cereale]
gi|169787242|gb|ACA80060.1| putative DNA lyase [Colletotrichum cereale]
gi|169787248|gb|ACA80063.1| putative DNA lyase [Colletotrichum cereale]
gi|169787250|gb|ACA80064.1| putative DNA lyase [Colletotrichum cereale]
gi|169787262|gb|ACA80070.1| putative DNA lyase [Colletotrichum cereale]
gi|169787268|gb|ACA80073.1| putative DNA lyase [Colletotrichum cereale]
gi|169787276|gb|ACA80077.1| putative DNA lyase [Colletotrichum cereale]
gi|169787286|gb|ACA80082.1| putative DNA lyase [Colletotrichum cereale]
gi|169787294|gb|ACA80086.1| putative DNA lyase [Colletotrichum cereale]
gi|169787308|gb|ACA80093.1| putative DNA lyase [Colletotrichum cereale]
gi|169787464|gb|ACA80171.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|423300230|ref|ZP_17278255.1| exodeoxyribonuclease III (xth) [Bacteroides finegoldii CL09T03C10]
gi|408474039|gb|EKJ92561.1| exodeoxyribonuclease III (xth) [Bacteroides finegoldii CL09T03C10]
Length = 255
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 131/301 (43%), Gaps = 54/301 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ + L + DI+C QETKL+ + +++ A GY+S+
Sbjct: 2 MKIITYNVNGLRAAVSK--GFPEWLAQENPDILCLQETKLQPDQYPAEVFEALGYKSYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRN-AKNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEK 198
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYK 293
+E YT W + N G RID+ + + P + L+S + H + C ++++
Sbjct: 199 QE-YTWWSYRFNSRAKNKGWRIDYCMASEPV---RRWLKSARILNEAVHSDHCPMVLEID 254
Query: 294 R 294
R
Sbjct: 255 R 255
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 62/289 (21%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V + + DADI C QE+KL+ ++ +L DGY S+++
Sbjct: 5 KLISWNVNGLRACVKK--GFLEYFKEIDADIFCIQESKLQEGQIDLEL---DGYTSYWNY 59
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F + + P+ + G G+E+
Sbjct: 60 AE-----KKGYSGTAVFTKEE----------PLTVKRGI-------------GIEEH--- 88
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQG 179
D+EGR + ++G+F L NVY P + + R+ +++ + V +K +L L +
Sbjct: 89 -----DNEGRVLTLEYGNFYLVNVYTPNS-KQGLERLDYRMVWEDVFRK---YLKELEKN 139
Query: 180 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG D +++ S L+E+G F D +R
Sbjct: 140 KPVIICGDLNVAHKEIDLKNPTSNRKNAGFTDEERSKI-----SELLEAG--FIDTYRYF 192
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 280
+P++ Y+ W A N G RID+ L + + D + H VT
Sbjct: 193 YPDKEGMYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIHMEVT 241
>gi|169787212|gb|ACA80045.1| putative DNA lyase [Colletotrichum cereale]
Length = 232
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|159469496|ref|XP_001692899.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277701|gb|EDP03468.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1192
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 70/106 (66%), Gaps = 11/106 (10%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++IV++N+NGL++ ++ FGSL + L +ADI+C QET+L R L+ +L +A G++S+F
Sbjct: 3 LRIVSWNINGLKRVITIFGSLERFLRVLNADIVCLQETQL-RDGLEPELAVAPGWDSYFG 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET 106
TR R+GYSG ATF R P P++AE+GFTGL E
Sbjct: 62 FTRC----RSGYSGTATFVRRDGPLP------PLSAEDGFTGLWEA 97
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLL 176
+L +D EGR VITDHG +L NVYGP + T R+++K+ F+ LQ R + L
Sbjct: 216 LGPGQLRALDGEGRVVITDHGALVLVNVYGPYVGVKRTEERMRYKIAFYRALQHRLDGFL 275
Query: 177 CQGRRIFVVGDLNIAPAAIDRCD 199
GRR+ V+GD NIAP D D
Sbjct: 276 AAGRRLVVLGDFNIAPERRDDSD 298
>gi|380695720|ref|ZP_09860579.1| exodeoxyribonuclease III [Bacteroides faecis MAJ27]
Length = 254
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 131/300 (43%), Gaps = 52/300 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + D++C QETKL+ + +++ A GY+S+
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLVQENPDVLCLQETKLQPDQYPAEVFEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L F D FR +PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYKR 294
E YT W + N G RID+ + + P + L+S + + H + C + ++ +R
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMTSEPV---RPLLKSASILNGAVHSDHCPMALEIER 254
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 124/273 (45%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ ++ DAD+ C QE+K+++++ D YE +++
Sbjct: 5 MKLISWNVNGLRACMNK--GFMDFFNTIDADVFCIQESKMQKEQATFDF---PNYEEYWN 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA F + K L VA + G +
Sbjct: 60 SAE-----KKGYSGVAIFSKKK--------PLSVAYDMGIS------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + ++ F L NVY P + E R+++++++ F K E
Sbjct: 88 ----HHDKEGRIITAEYNDFFLVNVYTPNSKRE-LERLEYRMEWEDDFRNFLKNLEVT-- 140
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + V GDLN+A ID R +AG F E S+L++SG F D FR
Sbjct: 141 --KPVIVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSVLLDSG--FTDTFRY 192
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
HP AY+ W A + N G RID+ LC+
Sbjct: 193 FHPTLEGAYSWWSYMGKARENNTGWRIDYFLCS 225
>gi|312144054|ref|YP_003995500.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
gi|311904705|gb|ADQ15146.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
Length = 254
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 144/329 (43%), Gaps = 83/329 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNG+R V++ G L ++ D++ QE +++ ++LK L DGY S+F+
Sbjct: 1 MRIYSWNVNGIRA-VNRKGFL-DWIEEEKPDVLALQEIRIQPEQLKDKLKNIDGYHSYFN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + + + P+ +GF G+E F
Sbjct: 59 YGE-----KAGYSGVAIYSKEE----------PLDVWKGF-------------GIERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ F L N+Y P S R+ +KL F+ + E L +G+
Sbjct: 89 ------DYEGRVIAAEYPEFYLLNIYFPNGKSSKE-RLNYKLDFYDATLEYAEELREEGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF------RIWFRSMLVESGGSFFDVFRSKHPE 234
+ V GD N A +D + PD KN R W + E+ G F D +R +P+
Sbjct: 142 GVVVSGDYNTAHHPLDLKN--PDANKNTSGFLEIEREWLDKL--ENHG-FIDTYRYFYPD 196
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
+E Y+ W T A + N G RID+ + +L+ ++N DIL D
Sbjct: 197 -KETYSWWSYRTRARERNAGWRIDYHFIS-------EELED------NLNHSDILTD--- 239
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ GSDH PV + L
Sbjct: 240 ----------------VMGSDHCPVTVDL 252
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 127/278 (45%), Gaps = 72/278 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +S+ ++ DADI C QETK+ + + L+ GYE +++
Sbjct: 1 MKLISWNVNGLRACLSK--GFEDFFNTADADIFCIQETKMHPDQAEIGLI---GYEKYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S T G I E
Sbjct: 56 SAV-----KKGYSGTAVFTRI-APLSVT------------------YGLNIEEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-----FL 175
D EGR + + F L NVY P + E +R+ +++ RWE +L
Sbjct: 86 ------DQEGRIITLEFEDFFLVNVYTPNSKRE-LLRLDYRM--------RWEDEFRTYL 130
Query: 176 --LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFF 225
L Q + + + GD+N+A ID R +AG D +++ + L+E+G F
Sbjct: 131 TALDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FT 183
Query: 226 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
D FR +P++ +AYT W A N G RID+ L +
Sbjct: 184 DTFRHIYPDKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 128/278 (46%), Gaps = 72/278 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +S+ ++ DADI C QETK+ + + L+ GYE +++
Sbjct: 1 MKLISWNVNGLRACLSK--GFEGFFNTADADIFCIQETKMHPDQAEIGLI---GYEKYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S ++ GL
Sbjct: 56 SAV-----KKGYSGTAVFTRI-TPLS------------------------VIYGLN---- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE------- 173
+ + D EGR + + +F L NVY P + E +R+ +++ RWE
Sbjct: 82 --IEEHDQEGRLITLEFENFFLVNVYTPNSKRE-LLRLDYRM--------RWEDEFRTYL 130
Query: 174 FLLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFF 225
L Q + + + GD+N+A ID R +AG D +++ + L+E+G F
Sbjct: 131 ITLNQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FT 183
Query: 226 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
D FR +P++ +AYT W A N G RID+ L +
Sbjct: 184 DTFRHIYPDKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|260642288|ref|ZP_05415267.2| exodeoxyribonuclease III [Bacteroides finegoldii DSM 17565]
gi|260622802|gb|EEX45673.1| exodeoxyribonuclease III [Bacteroides finegoldii DSM 17565]
Length = 255
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 131/301 (43%), Gaps = 54/301 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ + L + DI+C QETKL+ + +++ A GY+S+
Sbjct: 2 MKIITYNVNGLRAAVSK--GFPEWLAQENPDILCLQETKLQPDQYPAEVFEALGYKSYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRN-AKNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEK 198
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYK 293
+E YT W + N G RID+ + + P + L+S + H + C ++++
Sbjct: 199 QE-YTWWSYRFNSRAKNKGWRIDYCMTSEPV---RRWLKSARILNEAVHSDHCPMVLEID 254
Query: 294 R 294
R
Sbjct: 255 R 255
>gi|169787434|gb|ACA80156.1| putative DNA lyase [Colletotrichum cereale]
gi|169787472|gb|ACA80175.1| putative DNA lyase [Colletotrichum cereale]
gi|169787474|gb|ACA80176.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GD+N
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDVN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|261416712|ref|YP_003250395.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385791552|ref|YP_005822675.1| exodeoxyribonuclease III [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373168|gb|ACX75913.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325662|gb|ADL24863.1| exodeoxyribonuclease III [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 265
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 48/264 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF- 59
MKI ++NVNG+R + + + D DI+C QE + + ++ S++ +GY +++
Sbjct: 1 MKIYSWNVNGIRSVLKK--GFEDWFSATDPDILCLQEVRAEKNQV-SEIATREGYYTYWN 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+C R + GYSGVA + +++ P A GF +E+F
Sbjct: 58 ACKR-----KKGYSGVAVYSKIE----------PDAVNYGFD-------------IEEF- 88
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D EGR + ++L +Y P D R+ +KL+F+ + + L G
Sbjct: 89 -------DEEGRVLQLVFPDWVLNCIYFPNGGQGDD-RLDYKLRFYDAFLENSKQWLADG 140
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 235
+ + VGD N ID + + F R W VE+G F D FR+ HP+
Sbjct: 141 KHVVTVGDYNTCHKEIDIARPKENENVSGFLPIERAWM-DKYVENG--FVDTFRTLHPDT 197
Query: 236 REAYTCWPSNTGAEQFNYGTRIDH 259
R+AY+ W + GA + N G R+D+
Sbjct: 198 RDAYSWWSNRFGARERNVGWRLDY 221
>gi|302877288|ref|YP_003845852.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
gi|302580077|gb|ADL54088.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
Length = 254
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 111/263 (42%), Gaps = 46/263 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I++ N+NG+R S+ + L DAD+IC QE K + ++ ++ GY +F
Sbjct: 1 MRIISVNLNGIRSASSK--GFYEWLAQQDADVICLQELKAQAADMTEHMLTPLGYHGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +CR LP + GL G+E F
Sbjct: 59 YAE-----KKGYSGVGIYCR----------ELP---KNVIVGL----------GIEQF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D + + ++Y P S + R K F L GR
Sbjct: 89 ------DAEGRYLCADFADYSVVSLYLPSGSSGEE-RQGVKFSFMEAFLPHLRELRASGR 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ V GD NIA ID + + + F R W + E G F DVFR HPE
Sbjct: 142 EVIVCGDWNIAHKEIDLKNWRGNKKNSGFLPEERAWLTQLFDEVG--FVDVFRRVHPE-L 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDH 259
EAYT W + A N G RID+
Sbjct: 199 EAYTWWSNRGQAWAKNVGWRIDY 221
>gi|307353485|ref|YP_003894536.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
gi|307156718|gb|ADN36098.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
Length = 254
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 132/327 (40%), Gaps = 79/327 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V + G L ++ + DI+C QETK +L S + GY S+FS
Sbjct: 1 MKLVSWNVNGLRA-VEKKGFL-DFVNEYQPDILCVQETKAHEDQLSSSIRHPKGYFSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A + R + S +P
Sbjct: 59 SAE-----RKGYSGTALYSRFEPESISYGFGVP--------------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++DSEGR +I ++ F L+++Y P R+QFK+ F+ + L G+
Sbjct: 87 ----ELDSEGRIIIAEYSDFNLYDIYFPNGKMSKE-RLQFKMDFYEECLRHAVSDLDSGK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD+N A ID + + F R W +L F D FR E
Sbjct: 142 NVIICGDVNTAHKEIDLARPKENSKVSGFLEIERKWIDRLL---DAGFKDSFRMFTSEGG 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
Y+ W +GA + N G RID+ + + ++ V IL
Sbjct: 199 -YYSWWDLKSGARERNVGWRIDYFFVS-------------DGISGRVKSASIL------- 237
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+++EGSDH PV + L
Sbjct: 238 ------------SQVEGSDHCPVELEL 252
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis
sativus]
Length = 501
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 128/281 (45%), Gaps = 52/281 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQE-LKSDLVMADGYE-SF 58
+KI+++NVNGLR + + S +L + D D++C QETKL+ ++ L + DGY ++
Sbjct: 243 VKILSWNVNGLRALL-KGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHYTY 301
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++C+ + + GYSG A R+K P++ G G+ E
Sbjct: 302 WTCSVS----KLGYSGTAIISRIK----------PISVRYGL-GISEH------------ 334
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
D EGR V+ + F L NVY P + + R+ +++ + + L +
Sbjct: 335 --------DGEGRVVMVEFDSFFLLNVYVPNS-GDGLKRLSYRITQWDPSLSNYIKELEK 385
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN A ID R AG NE R F + ++ G F D FR K
Sbjct: 386 SKPVILTGDLNCAHQEIDLYNPAGNRKSAG---FTNEERQSFETNFLQKG--FVDTFRQK 440
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
HP+ YT W G + N G R+D+ L + + HD
Sbjct: 441 HPD-VVGYTYWGYRHGGRKTNKGWRLDYFLVSERVAEKVHD 480
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 142/331 (42%), Gaps = 94/331 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNG+R +++ +S ADI C QETK+++ +++ DL +GY +++
Sbjct: 1 MKLVSWNVNGIRACLAK--GFMDFFNSVSADIFCIQETKVQQGQVQLDL---EGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F R K P++ +G G+ E
Sbjct: 56 YAI-----RKGYSGTALFTREK----------PLSVVDG-IGMNEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D+EGR + ++ F L VY P + R+ +++++ F KR L
Sbjct: 86 ------DNEGRVLTAEYDKFYLVTVYTPNS-QRGLTRLDYRMKWEDDFREYLKR----LD 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + GDLN+A ID R +AG F E +ML++SG F D FR
Sbjct: 135 TTKPVIICGDLNVAHREIDIKNPEANRRNAG--FTDEEREK--MTMLIQSG--FTDSFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 290
+P++ +AYT W A + N G RID+ L + + D
Sbjct: 189 LYPDKTDAYTWWSYMFNAREKNIGWRIDYFLVSDRIRDKIRD------------------ 230
Query: 291 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 321
GM + + GSDH PV++
Sbjct: 231 --------------AGMYSEIYGSDHCPVFL 247
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 144/332 (43%), Gaps = 92/332 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +D F DADI C QETKL+ ++ +L + Y
Sbjct: 1 MKLISWNVNGLRACVT-----KGFMDYFNESDADIFCLQETKLQAGQI--ELPLEGRYSQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F +V+ P + + G+E+
Sbjct: 54 YWNYAV-----KKGYSGTAVFTKVE-PLT------------------------VRYGIEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
S+D EGR + + F L NVY P A D R+ ++L++ + R+ L
Sbjct: 84 DSED-------EGRILTLEFDRFYLVNVYTPNA-KRDLSRLGYRLEW----EDRFRAYLL 131
Query: 178 Q---GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSK 231
+ + + V GDLN+A ID +A + + F R + L+ESG F D FR
Sbjct: 132 ELDAQKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTTEERGKMTDLLESG--FIDTFRHL 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
HPER +A++ W + N G RID+ L + + HV +
Sbjct: 190 HPERDDAFSWWSFMPKVRERNIGWRIDYFLASAR-------------LAPHVTDA----- 231
Query: 292 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
G+ + + GSDH PV + L
Sbjct: 232 --------------GIDSAILGSDHCPVMVQL 249
>gi|169787196|gb|ACA80037.1| putative DNA lyase [Colletotrichum cereale]
gi|169787202|gb|ACA80040.1| putative DNA lyase [Colletotrichum cereale]
gi|169787204|gb|ACA80041.1| putative DNA lyase [Colletotrichum cereale]
gi|169787226|gb|ACA80052.1| putative DNA lyase [Colletotrichum cereale]
gi|169787252|gb|ACA80065.1| putative DNA lyase [Colletotrichum cereale]
gi|169787254|gb|ACA80066.1| putative DNA lyase [Colletotrichum cereale]
gi|169787296|gb|ACA80087.1| putative DNA lyase [Colletotrichum cereale]
gi|169787298|gb|ACA80088.1| putative DNA lyase [Colletotrichum cereale]
gi|169787314|gb|ACA80096.1| putative DNA lyase [Colletotrichum cereale]
gi|169787374|gb|ACA80126.1| putative DNA lyase [Colletotrichum cereale]
gi|169787376|gb|ACA80127.1| putative DNA lyase [Colletotrichum cereale]
gi|169787378|gb|ACA80128.1| putative DNA lyase [Colletotrichum cereale]
gi|169787380|gb|ACA80129.1| putative DNA lyase [Colletotrichum cereale]
gi|169787382|gb|ACA80130.1| putative DNA lyase [Colletotrichum cereale]
gi|169787384|gb|ACA80131.1| putative DNA lyase [Colletotrichum cereale]
gi|169787386|gb|ACA80132.1| putative DNA lyase [Colletotrichum cereale]
gi|169787388|gb|ACA80133.1| putative DNA lyase [Colletotrichum cereale]
gi|169787390|gb|ACA80134.1| putative DNA lyase [Colletotrichum cereale]
gi|169787392|gb|ACA80135.1| putative DNA lyase [Colletotrichum cereale]
gi|169787394|gb|ACA80136.1| putative DNA lyase [Colletotrichum cereale]
gi|169787396|gb|ACA80137.1| putative DNA lyase [Colletotrichum cereale]
gi|169787398|gb|ACA80138.1| putative DNA lyase [Colletotrichum cereale]
gi|169787432|gb|ACA80155.1| putative DNA lyase [Colletotrichum cereale]
gi|169787436|gb|ACA80157.1| putative DNA lyase [Colletotrichum cereale]
gi|169787450|gb|ACA80164.1| putative DNA lyase [Colletotrichum cereale]
gi|169787456|gb|ACA80167.1| putative DNA lyase [Colletotrichum cereale]
gi|169787488|gb|ACA80183.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L S D + + + +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPESQQIGGYPRPDQLPGELDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|449494709|ref|XP_004159624.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Cucumis sativus]
Length = 501
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 128/281 (45%), Gaps = 52/281 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQE-LKSDLVMADGYE-SF 58
+KI+++NVNGLR + + S +L + D D++C QETKL+ ++ L + DGY ++
Sbjct: 243 VKILSWNVNGLRALL-KGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHYTY 301
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++C+ + + GYSG A R+K P++ G G+ E
Sbjct: 302 WTCSVS----KLGYSGTAIISRIK----------PISVRYGL-GISEH------------ 334
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
D EGR V+ + F L NVY P + + R+ +++ + + L +
Sbjct: 335 --------DGEGRVVMVEFDSFXLLNVYVPNS-GDGLKRLSYRITQWDPSLSNYIKELEK 385
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN A ID R AG NE R F + ++ G F D FR K
Sbjct: 386 SKPVILTGDLNCAHQEIDLYNPAGNRKSAG---FTNEERQSFETNFLQKG--FVDTFRQK 440
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
HP+ YT W G + N G R+D+ L + + HD
Sbjct: 441 HPD-VVGYTYWGYRHGGRKTNKGWRLDYFLVSERVAEKVHD 480
>gi|407893404|ref|ZP_11152434.1| exodeoxyribonuclease III [Diplorickettsia massiliensis 20B]
Length = 261
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 111/265 (41%), Gaps = 50/265 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+ I T+NVN LR R+ + K L + D++ QETK+ Q+ + GYE FS
Sbjct: 5 VTIATWNVNSLRVRLQH---VLKWLVTHQPDVLALQETKVTDQDFPIAALRDAGYEVCFS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R P E + P GFT
Sbjct: 62 -------GQKSYNGVAILSRF--PIQQVETSFP-----GFT------------------- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D++ R +I G + N+Y P S D+ + ++KL + LQ L R
Sbjct: 89 ------DTQRRLLIATLGPLRVLNLYVPNGASLDSEKYEYKLAWLAQLQDYLAKELATQR 142
Query: 181 RIFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
+ VVGD NIAP D D AG R F+ L++ G D FR HPE
Sbjct: 143 SVIVVGDFNIAPEDRDVYDPSRWAGHVLVSQPERQAFQQ-LIDLG--LVDTFRLFHPEAN 199
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHIL 261
Y+ W A + N+G RIDHIL
Sbjct: 200 H-YSWWDYRAAAFRRNHGLRIDHIL 223
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 118/267 (44%), Gaps = 49/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V++ G+ +S DAD+ C QETKL+ +++ L + + Y+ F++
Sbjct: 1 MKFVSWNVNGLRACVNK-GAFLPYFESVDADVFCVQETKLQAGQIQ--LPIGEAYQQFWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F R+ P+ GF
Sbjct: 58 YAE-----RKGYSGTAVFTRMP----------PLDVRYGFGN------------------ 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+D EGR + + F + VY P A D R+ ++L++ + LC
Sbjct: 85 ----GVDPEGRIITLEFPSFYVVTVYTPNA-KRDLSRLPYRLEWEDAFRA----YLCALD 135
Query: 181 R---IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERR 236
R + GDLN+A ID +A + + F R+ + E F D FR+ +P+
Sbjct: 136 REKPVIACGDLNVAHQEIDIKNAKSNRGNSGFTDEERAKMTELLDAGFVDTFRALYPDVT 195
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ YT W + + N G RID+ L +
Sbjct: 196 DKYTWWSNMPRVRERNIGWRIDYFLVS 222
>gi|219884049|gb|ACL52399.1| unknown [Zea mays]
Length = 493
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 48/280 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELK--SDLVMADGY-E 56
+KI+++NVNGL+ + G S+++L D D++C QETK++ ++++ D ++ DGY
Sbjct: 233 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLL-DGYTN 291
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
SF++C+ + + GYSG A RVK P++ + G G+
Sbjct: 292 SFWTCSVS----KLGYSGTAIISRVK----------PLSIKYGL-------------GIS 324
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
D D+EGR V + F L Y P + + R+ +++ + + L
Sbjct: 325 DH--------DTEGRVVTVEFDDFYLLTAYVPNS-GDGLKRLTYRVTEWDPSLGNYMKEL 375
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----NEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + + GDLN A ID D D NE R F + + G F D FR +H
Sbjct: 376 EKSKPVILTGDLNCAHQEIDIHDPAGDRRSAGFTNEERESFGTNFLSKG--FVDTFRKQH 433
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
P AY+ W A + N G R+D+ L + + HD
Sbjct: 434 PNVV-AYSYWGYRHNARKTNKGWRLDYFLVSESITEKVHD 472
>gi|319902391|ref|YP_004162119.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
gi|319417422|gb|ADV44533.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
Length = 267
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 129/298 (43%), Gaps = 54/298 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ + L D++C QETKL+ ++ +D + + GY+ +
Sbjct: 14 MKIITYNVNGLRAAVTK--GFPEWLAQEQPDVLCLQETKLQPEQYPADALDSLGYKHYLY 71
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 72 SAR-----KKGYSGVAILAKRE----------PDRVEYGM-------------GMEEY-- 101
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR + D+ + +VY P S D R FK+ + Q E++L R
Sbjct: 102 ------DSEGRFLRADYDDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFQ---EYVLELQR 151
Query: 181 ---RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
++ + GD NI ID D + + F R W L F D FR HP
Sbjct: 152 TRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---DAGFTDSFRFLHP 208
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
+++E YT W + N G RID+ + P D + N H + C +L++
Sbjct: 209 DKQE-YTWWSYRFNSRARNKGWRIDYCMVNEPVRPMLKDARILN-DAVHSDHCPMLLE 264
>gi|15594879|ref|NP_212668.1| exodeoxyribonuclease III [Borrelia burgdorferi B31]
gi|195941668|ref|ZP_03087050.1| exodeoxyribonuclease III (exoA) [Borrelia burgdorferi 80a]
gi|216264267|ref|ZP_03436259.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223888847|ref|ZP_03623438.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224532684|ref|ZP_03673301.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225548581|ref|ZP_03769628.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226321012|ref|ZP_03796557.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
gi|226321840|ref|ZP_03797366.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|2688454|gb|AAC66902.1| exodeoxyribonuclease III [Borrelia burgdorferi B31]
gi|215980740|gb|EEC21547.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223885663|gb|EEF56762.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224512302|gb|EEF82686.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225370611|gb|EEH00047.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226233029|gb|EEH31782.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|226233613|gb|EEH32349.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
Length = 255
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 142/332 (42%), Gaps = 85/332 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 NSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLSYVENLADSLVCDGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL----- 235
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 121/264 (45%), Gaps = 44/264 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ ++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPDQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L Y P + E R+++++ + + + L + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLEYRMAWEDAF-RNYLLELDKKK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID + + F R+ + E G F D FR +P+ E Y
Sbjct: 138 PVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLYPDAIEEY 197
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
+ W A + N G RID+ + +
Sbjct: 198 SWWSYMGKARERNTGWRIDYFITS 221
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 128/290 (44%), Gaps = 60/290 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V + LD F DADI C QETKL+ +++ DL YE
Sbjct: 1 MKLVSWNVNGLRACVG-----KGFLDYFKEADADIFCLQETKLQEGQIELDL--GSEYEQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F R+K P++ G ME ED
Sbjct: 54 YWNYAE-----KKGYSGTAVFTRIK----------PLSVRYG------------ME--ED 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ + EGR + + F L VY P A D R+ +++++ + R+ L
Sbjct: 85 Y--------EPEGRIITLEFEQFYLVTVYTPNA-KRDLSRLDYRMEW----EDRFRTYLT 131
Query: 178 ---QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHP 233
+ + V GDLN+A ID +A + + + + R + E S F D FR +P
Sbjct: 132 GLDAVKPVIVCGDLNVAHNPIDIKNAKSNEGNSGYTLEERGKMTELLASGFIDTFRHFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 283
+R Y+ W + N G RID+ L + + D + CH+
Sbjct: 192 DREGVYSWWSYMPKIRERNIGWRIDYFLASSRLAPKLQDAG----IDCHI 237
>gi|218249629|ref|YP_002375040.1| exodeoxyribonuclease III [Borrelia burgdorferi ZS7]
gi|218164817|gb|ACK74878.1| exodeoxyribonuclease III [Borrelia burgdorferi ZS7]
Length = 255
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 144/332 (43%), Gaps = 85/332 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 NSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLFYVENLADSLVCDGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
YT W T A + N G RID+ + VNE +KR
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFI---------------------VNEF-----FKR 227
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
N K + ++ GSDH PV++ L +V
Sbjct: 228 ----NVE--KSLILDKVMGSDHCPVFLELADV 253
>gi|169787208|gb|ACA80043.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L S D + + + +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRPGQLPGELDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 139/328 (42%), Gaps = 86/328 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V + G L ++ ADI C QETKL+ ++ DL DGY +++
Sbjct: 1 MKFVSWNVNGLRACVKK-GFLAFFAET-GADIFCVQETKLQEGQIALDL---DGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + K P S G+ E
Sbjct: 56 YAE-----RKGYSGTAVFTK-KEPLSVR------------YGVGEN-------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
+ + EGR + ++ F L NVY P + D R+ ++L++ + ++ +L L +
Sbjct: 84 ----RTEPEGRILTLEYEDFYLVNVYTPNS-QRDLARLGYRLEWENRMRA---YLTDLDK 135
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 235
+ + V GD+N+A ID +A + + F R + L+ SG F D FR +PER
Sbjct: 136 KKPVIVCGDMNVAHQEIDLKNAKSNIGNSGFTAEERDKMTGLLNSG--FIDSFRYFYPER 193
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
AYT W + N G RID+ L +
Sbjct: 194 EGAYTWWSYMNKVRERNIGWRIDYFLVSKRL----------------------------- 224
Query: 296 KPGNAPRWKG-GMSTRLEGSDHAPVYMC 322
A R KG GM + GSDH PV++
Sbjct: 225 ----AGRLKGAGMYPEIMGSDHCPVFLA 248
>gi|290789946|pdb|3G00|A Chain A, Mth0212 In Complex With A 9bp Blunt End Dsdna At 1.7
Angstrom
gi|290789947|pdb|3G00|B Chain B, Mth0212 In Complex With A 9bp Blunt End Dsdna At 1.7
Angstrom
gi|290789951|pdb|3G0R|A Chain A, Complex Of Mth0212 And An 8bp Dsdna With Distorted Ends
gi|290789952|pdb|3G0R|B Chain B, Complex Of Mth0212 And An 8bp Dsdna With Distorted Ends
gi|290789960|pdb|3G2D|A Chain A, Complex Of Mth0212 And A 4 Bp Dsdna With 3'-Overhang
gi|290789961|pdb|3G2D|B Chain B, Complex Of Mth0212 And A 4 Bp Dsdna With 3'-Overhang
gi|290789966|pdb|3G38|A Chain A, The Catalytically Inactive Mutant Mth0212 (D151n) In
Complex With An 8 Bp Dsdna
gi|290789983|pdb|3G8V|A Chain A, The Rationally Designed Catalytically Inactive Mutant
Mth0212(D151n)
gi|290789985|pdb|3GA6|A Chain A, Mth0212 In Complex With Two Dna Helices
gi|290789986|pdb|3GA6|B Chain B, Mth0212 In Complex With Two Dna Helices
Length = 265
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 120/266 (45%), Gaps = 47/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L+ ++ DI+C QE K ++L L +GY SFF+
Sbjct: 4 LKIISWNVNGLRA-VHRKGFLKWFMEE-KPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + +V P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTKVP----------PSSLREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR I D F+L+N+Y P + R+++KL+F+ + GR
Sbjct: 92 ------DTEGRIQIADFDDFLLYNIYFPNGKMSEE-RLKYKLEFYDAFLEDVNRERDSGR 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + G+ N A ID + + F R W +E+G + D FR + +
Sbjct: 145 NVIICGNFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNSDPG 201
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
+ YT W T A + N G R+D+
Sbjct: 202 Q-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 55/275 (20%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K+V++NVNGLR + + DADI C QETKL+ +++ +L +GYE +++
Sbjct: 3 KLVSWNVNGLRACIGK--GFWDFFKEVDADIFCVQETKLQEGQIELEL---EGYEHYWNY 57
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F ++K PV++ G G+E+
Sbjct: 58 AV-----KKGYSGTAIFTKIK----------PVSSSCGI-------------GIEEH--- 86
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLCQ 178
D+EGR + + + L NVY P + E R+++++++ F V K+ E Q
Sbjct: 87 -----DNEGRVITLEFEEYFLVNVYTPNSKRE-LERLEYRMKWEDDFRVYLKQLE----Q 136
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 235
+ + + GD+N+A ID + + F + R S L+E G F D FR+ +P++
Sbjct: 137 TKPVIICGDMNVAHQEIDIKNPRSNKRSAGFTMEEREKFSELLEQG--FVDTFRTLYPDK 194
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
AYT W A + N G RID+ C L +
Sbjct: 195 TGAYTWWSYMFKAREKNVGWRIDY-FCISEALKDR 228
>gi|169787266|gb|ACA80072.1| putative DNA lyase [Colletotrichum cereale]
gi|169787312|gb|ACA80095.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L S D + + + +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRPGQLPGELDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|298385343|ref|ZP_06994901.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_14]
gi|298261484|gb|EFI04350.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_14]
Length = 254
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 117/270 (43%), Gaps = 47/270 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + DI+C QETKL+ + +++ A GY+++
Sbjct: 2 MKIITYNVNGLRAAVSK--GLPEWLVQENPDILCLQETKLQPDQYPAEVFEALGYKAYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L F D FR +PE++
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEKQ 199
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
E YT W + N G RID+ + + P
Sbjct: 200 E-YTWWSYRFNSRAKNKGWRIDYCMTSEPV 228
>gi|114330706|ref|YP_746928.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
gi|114307720|gb|ABI58963.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
Length = 257
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 128/299 (42%), Gaps = 53/299 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T N+NGLR S+ L L +AD+IC QE K ++ ++ + DGY +F
Sbjct: 1 MRIITLNLNGLRSAASK--GLFDWLPQQEADVICVQELKAQQNDINGVMRTPDGYSGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV + R +P +I+EG
Sbjct: 59 CAV-----KKGYSGVGIYTR-HAP------------------------DQIVEG------ 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLC 177
+ +ID+EGR + D G+ + ++Y P S + + F FF +LQ L
Sbjct: 83 TGIAEIDAEGRFLRVDFGNLTVISIYLPSGSSGEHRQAAKFFFMEHFFPLLQS----LAE 138
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
GR + + GD NIA ID + + + F R W ++ E DVFR+ +P
Sbjct: 139 GGREVLLCGDWNIAHKEIDLKNWRSNQKNSGFLPEERAWLSTVFDEL--KLVDVFRTINP 196
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 292
E + YT W + A N G RID+ + A P L S + +LIDY
Sbjct: 197 E-PDQYTWWSNRGQAWAKNVGWRIDYQI-ATPGLASTATGASIYKTERFSDHAPLLIDY 253
>gi|225552135|ref|ZP_03773075.1| exodeoxyribonuclease III [Borrelia sp. SV1]
gi|225371133|gb|EEH00563.1| exodeoxyribonuclease III [Borrelia sp. SV1]
Length = 255
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 140/330 (42%), Gaps = 81/330 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 KSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLSYVENLADSLVCDGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NIA ID + + I W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDLISPDSNRESPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP--- 195
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 GYYTWWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL------- 235
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
++ GSDH PV++ L +V
Sbjct: 236 ------------DKVMGSDHCPVFLELADV 253
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 44/264 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ ++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPDQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L Y P + E R+ +++ + + + L + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLDYRMNWEDAF-RNYLLELDKKK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID + + F R+ + E G F D FR +P+ E Y
Sbjct: 138 PVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLYPDAIEQY 197
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
+ W A + N G RID+ + +
Sbjct: 198 SWWSYMGKARERNTGWRIDYFITS 221
>gi|343127835|ref|YP_004777766.1| exodeoxyribonuclease III [Borrelia bissettii DN127]
gi|342222523|gb|AEL18701.1| exodeoxyribonuclease III [Borrelia bissettii DN127]
Length = 255
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 142/332 (42%), Gaps = 85/332 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYAPDILCVQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR ++ + F+L N Y P + + R+ +KL F ++ + L+ G+
Sbjct: 87 ------DNEGRGLVAYYDDFVLINGYFPNSQALRR-RLVYKLDFLSYVENLIDSLVGGGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTQIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
YT W T A + N G RID+ L + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFLV-------------NEFFRRNVKKSLIL----- 235
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
+ GSDH PV++ L +V
Sbjct: 236 --------------DEVMGSDHCPVFLELTDV 253
>gi|373486776|ref|ZP_09577448.1| exodeoxyribonuclease III Xth [Holophaga foetida DSM 6591]
gi|372011200|gb|EHP11799.1| exodeoxyribonuclease III Xth [Holophaga foetida DSM 6591]
Length = 258
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 118/281 (41%), Gaps = 44/281 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++N+NG R + L+ D D++ QE +R + + DL + E+ +
Sbjct: 1 MKFVSWNINGFRSALKN--GFMDWLEDTDPDVLSLQE--IRAEWDQVDLGVRQMLEANYD 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GY+G AT R +G G + T G G+ED+
Sbjct: 57 ICWFPATRKKGYAGSATLSR-----------------KGL-GWIHTPGL----GIEDY-- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR V ++ G L Y P A S VR+ +K QF L +R +L QGR
Sbjct: 93 ------DCEGRIVQSERGDLTLLAGYFPNA-SSGLVRLPYKRQFALDLAERVRQVLAQGR 145
Query: 181 RIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
++ V GD+N+AP ID P F E R FR L DV R ++P
Sbjct: 146 QLIVTGDMNVAPEEIDLARPKDNRMSPGFTDEE-REDFRGYLAS---GLRDVLREQNPGT 201
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
YT W GA N G RID L + + + D + H
Sbjct: 202 PGLYTWWSQRGGARAKNVGWRIDLFLVSEGLMGRVKDTRIH 242
>gi|219685209|ref|ZP_03540029.1| exodeoxyribonuclease III [Borrelia garinii Far04]
gi|219673305|gb|EED30324.1| exodeoxyribonuclease III [Borrelia garinii Far04]
Length = 254
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 143/332 (43%), Gaps = 85/332 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVQEYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +I + +F+L N Y P + + R+ +KL F ++ + L+ G+
Sbjct: 87 ------DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNGGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDRFLNKGYVDTFRIF-NKEP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVKKSLIL----- 235
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|169787270|gb|ACA80074.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFLVFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +DSF DADI C QETKL+ +++ +L GYE
Sbjct: 1 MKVISWNVNGLRAAVT-----KGFIDSFNELDADIFCLQETKLQPHQIELEL---PGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F R+K P+A G G+E+
Sbjct: 53 FWNSAV-----KKGYSGTAVFTRIK----------PIAVTNGI-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + ++ +F L Y P + E R+ +++ + + + L
Sbjct: 85 H--------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLDYRMTWEDAF-RAYLLELD 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG F+ E + L+ESG F D FR
Sbjct: 135 KKKPVILCGDLNVAHNEIDLKNPKTNRKNAG--FSDEERAK--MTELLESG--FTDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+ + Y+ W A N G RID+ + +
Sbjct: 189 LYPDAVDEYSWWSYMGKARDRNVGWRIDYFITS 221
>gi|149031346|gb|EDL86344.1| rCG38932, isoform CRA_b [Rattus norvegicus]
Length = 346
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 41/208 (19%)
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVE 219
++F+ +LQ R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSN 60
Query: 220 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
G G F D FR HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 61 PGNEAGPHIGHFMDSFRYFHPKQQRAFTCWSVVSGARHLNYGSRLDYVL----------- 109
Query: 273 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 332
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRSLVIDTFQ---------ASFLLPEVMGSDHCPVGAVLN-VSCVPAK 148
Query: 333 STPSLASRYLPIIRGVQQTLVSVLMKRE 360
P+L +R+LP G Q ++ L+ E
Sbjct: 149 QCPALCTRFLPEFAGTQLKILRFLVPLE 176
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 35/175 (20%)
Query: 450 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE-EV 508
H R RK + Q SL S+F SN+S + + +L + + +T T ++E +
Sbjct: 203 IHSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAM 260
Query: 509 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 568
NK+P +DEK+ V W+ +
Sbjct: 261 ATVVKEKNKVP--------------------EAKDEKE-----------VRTAFWKSMLS 289
Query: 569 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKK GP FGR F++CAR GP S+P + C +F W+
Sbjct: 290 -GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSDPSSRCNFFLWS 343
>gi|386853934|ref|YP_006203219.1| ExoA protein [Borrelia garinii BgVir]
gi|365193968|gb|AEW68866.1| ExoA [Borrelia garinii BgVir]
Length = 255
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 143/332 (43%), Gaps = 85/332 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVQEYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + + K P+A + G E F
Sbjct: 58 RSKIK-----GYSGVCIYSKAK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +I + +F+L N Y P + + R+ +KL F ++ + L+ G+
Sbjct: 87 ------DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNSGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
YT W T A + N G RID+ + + F ++ + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFVV-------------NEFFKRNIKKSLIL----- 235
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|387826172|ref|YP_005805625.1| exodeoxyribonuclease III [Borrelia burgdorferi JD1]
gi|312147931|gb|ADQ30590.1| exodeoxyribonuclease III [Borrelia burgdorferi JD1]
Length = 255
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 141/332 (42%), Gaps = 85/332 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL+ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIF-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 NSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLNFLSYVENLADSLVCDGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL----- 235
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|219684183|ref|ZP_03539127.1| exodeoxyribonuclease III [Borrelia garinii PBr]
gi|219672172|gb|EED29225.1| exodeoxyribonuclease III [Borrelia garinii PBr]
Length = 255
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 143/332 (43%), Gaps = 85/332 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVQEYTPDILCIQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +I + +F+L N Y P + + R+ +KL F ++ + L+ G+
Sbjct: 87 ------DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNGGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDRFLNKGYVDTFRIF-NKEP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFVV-------------NEFFKRNVKKSLIL----- 235
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 44/264 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ ++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPDQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L Y P + E R+ +++ + + + L + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLDYRMTWEDAF-RNYLLELDKKK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID + + F R+ + E G F D FR +P+ E Y
Sbjct: 138 PVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLYPDAIEQY 197
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
+ W A + N G RID+ + +
Sbjct: 198 SWWSYMGKARERNTGWRIDYFITS 221
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 139/328 (42%), Gaps = 88/328 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNG+R V + LD F +ADI C QE+KL+ +++ +L DGY
Sbjct: 1 MKLVSWNVNGIRACVK-----KGFLDFFMEENADIFCIQESKLQEGQIELNL---DGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P+ G G
Sbjct: 53 YWNYAE-----KKGYSGTAVFTKEK----------PLYVSYGIAG--------------- 82
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ + EGR + + +F L NVY P + D R+ ++L++ + + + L
Sbjct: 83 ------RETEPEGRSLTLEFENFYLLNVYTPNS-KRDLARLPYRLEWEDEI-REYILELE 134
Query: 178 QGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
Q + + + GDLN+A ID R + G +E R S+L E F D FR +P
Sbjct: 135 QKKPVILCGDLNVAHLDIDLKNARSNRGNSGFTDEERGKMTSLLSE---GFVDSFRYLYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
E+ AYT W + N G RID+ + + ++H L S + CDI+
Sbjct: 192 EQEGAYTWWSYMAKVRERNIGWRIDYFIVSDKL--KEHILDSKIY-------CDIM---- 238
Query: 294 RWKPGNAPRWKGGMSTRLEGSDHAPVYM 321
GSDH P+ +
Sbjct: 239 -------------------GSDHCPIML 247
>gi|221218058|ref|ZP_03589524.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224533538|ref|ZP_03674127.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225549668|ref|ZP_03770634.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|387827436|ref|YP_005806718.1| exodeoxyribonuclease III [Borrelia burgdorferi N40]
gi|221192006|gb|EEE18227.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224513211|gb|EEF83573.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225369945|gb|EEG99392.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|312149695|gb|ADQ29766.1| exodeoxyribonuclease III [Borrelia burgdorferi N40]
Length = 255
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 141/332 (42%), Gaps = 85/332 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL+ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIF-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 NSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR ++ + FIL N Y P + R+ +KL F ++ + L+C G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLSYVENLADSLVCDGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL----- 235
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|448112527|ref|XP_004202119.1| Piso0_001598 [Millerozyma farinosa CBS 7064]
gi|359465108|emb|CCE88813.1| Piso0_001598 [Millerozyma farinosa CBS 7064]
Length = 464
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 141/330 (42%), Gaps = 73/330 (22%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLD-SFD---ADIICFQETKLRRQELKS-DLVMAD 53
++ V++NVNG++ + + + + D +FD ADII QE KL LK LV
Sbjct: 24 IRFVSFNVNGVKTLFNYHPWNTFSQQFDPAFDFLKADIISLQELKLSSTTLKDLKLVSLK 83
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP-----VAAEEGFTGLLETSG 108
Y+SF S R + GYSGV F R+ P +V + V AEEG +G L++
Sbjct: 84 NYKSFISLPRI----KKGYSGVGLFVRI--PDDKEDVTVKSSLRIVKAEEGVSGFLKSPE 137
Query: 109 -----------SKIMEGLEDFSKDELLKIDSEGRCV-ITDHGHFILFNVYGPRADSEDTV 156
S + G +++D EGRC+ I + ++F+VY P S+
Sbjct: 138 DPERCYRDLPESDSIGGYPRIDNTLGVELDKEGRCICIELASNLVVFSVYCPANSSQTQT 197
Query: 157 RIQFKLQFFHVLQKR-WEFLLCQGRRIFVVGDLNIAPAAIDRCD---------------- 199
+++ F L +R + + + V+GD+N+ ID D
Sbjct: 198 GETYRMNFLRALFERCYNLKYVHKKEVVVLGDINVCVDLIDHADELNARVKNNLVTNPIL 257
Query: 200 -----AGPDFAK------NEF------RIWFRSMLVES--------GGSF-FDVFRSKHP 233
+G F + N+F R S +V+S G +F FD R K
Sbjct: 258 LGSPNSGNLFERANVEECNKFKSSTPARKLLNSYVVQSENFKDLSTGRNFLFDSTRIKQE 317
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
R +T W + T A Q NYG+RID IL +
Sbjct: 318 RRMNMFTVWNTLTNARQSNYGSRIDLILAS 347
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 61/300 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L +ADI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETNADIFCVQETKLQEGQ-----ILMENMEEYTQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F ++K P S + GLE+
Sbjct: 54 YWNYAEK--KGYSGTAIFTKIK-PLS------------------------VHYGLEENE- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ EGR + + +F L NVY P R S R++++ +F LQ+ L
Sbjct: 86 ------EPEGRTITLEFENFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYLQQ-----LD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPE 234
+ + V GDLN+A ID +A ++ F R S+L+++G F D FR+ +P+
Sbjct: 135 ALKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSLLLDAG--FIDTFRTFYPD 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 291
R + Y+ W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 193 RTDVYSWWSYMPKVRERNIGWRIDYFLVS----ERLRPLLMDASIDCHITGSDHCPVILD 248
>gi|399573806|gb|AFP49242.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
Length = 228
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 27/180 (15%)
Query: 35 FQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV 94
QETK++R++L+ D+V+ G++ FS K + GYSGVA + R P+
Sbjct: 1 MQETKIQRKDLQDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR-------NATCCPI 49
Query: 95 AAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSEGRCVITDHGHF 140
AEEG TG+L S + + + + + L +DSEGRCV+ + F
Sbjct: 50 RAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSEGRCVVLEFPAF 109
Query: 141 ILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
+L +Y P + D+ R F+L++ + L R L+ G+++ + GDLN+ +D C+
Sbjct: 110 VLIGIYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLNVIRGEMDTCNV 167
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +DSF DADI C QETKL+ +++ +L GYE
Sbjct: 1 MKLISWNVNGLRAAVT-----KGFIDSFNELDADIFCLQETKLQPHQIELEL---PGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F R+K P+A G G+E+
Sbjct: 53 FWNSAV-----KKGYSGTAVFTRIK----------PIAVTNGI-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + ++ +F L Y P + E R+ +++ + + + L
Sbjct: 85 H--------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLDYRMTWEDAF-RAYLLELD 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG F+ E + L+ESG F D FR
Sbjct: 135 KKKPVILCGDLNVAHNEIDLKNPKTNRKNAG--FSDEERAK--MTELLESG--FTDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+ + Y+ W A N G RID+ + +
Sbjct: 189 LYPDAVDEYSWWSYMGKARDRNVGWRIDYFITS 221
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 124/271 (45%), Gaps = 58/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ ++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPDQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L Y P + E R+ +++ + + + L + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLDYRMTWEDAF-RNYLLELDKKK 137
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKH 232
+ + GDLN+A ID R +AG F+ E R+ + E G F D FR +
Sbjct: 138 PVILCGDLNVAHQEIDLKNPKMNRKNAG--FSDEE-----RAKMTELLGAGFTDTFRHLY 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P+ E Y+ W A + N G RID+ + +
Sbjct: 191 PDAIEQYSWWSYMGKARERNTGWRIDYFITS 221
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 137/298 (45%), Gaps = 58/298 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + +AD+ QETK++ +L DL GY +F
Sbjct: 1 MKLISWNVNGLRAVVKK--DFVTTFQQLNADVFSIQETKMQAGQLDLDL---PGYHQYFF 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F + A P++ ++G G+E+F
Sbjct: 56 YAK-----KKGYSGTAVFSK----------AEPISVKQGL-------------GIEEF-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + + + L N Y P + + R+ +++++ VL + + L +
Sbjct: 86 ------DDEGRTITLEFPDYYLINSYTPNSQPK-LKRVDYRMRYDDVL-REYMLQLSADK 137
Query: 181 RIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GDLN+A ID + P F+ E R F S L++SG F D FRS HP+
Sbjct: 138 PVILCGDLNVAHEEIDLKNPKTNHKNPGFSDQE-RDKF-SELLDSG--FIDSFRSLHPQE 193
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA--GPCLHQKHDLQSHNFVTCHVNECDILID 291
+ Y+ W A + N G RID+ + + G L Q D+ + + + H C I +D
Sbjct: 194 IK-YSWWSYRFNARKNNAGWRIDYFVVSKNGQQLIQDADILTDIYGSDH---CPIELD 247
>gi|299146132|ref|ZP_07039200.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_23]
gi|298516623|gb|EFI40504.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_23]
Length = 253
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 116/269 (43%), Gaps = 47/269 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + DI+C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GMEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVMELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L + D FR+ PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGYVDAFRTLCPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEP 226
>gi|160884274|ref|ZP_02065277.1| hypothetical protein BACOVA_02252 [Bacteroides ovatus ATCC 8483]
gi|156110013|gb|EDO11758.1| exodeoxyribonuclease III [Bacteroides ovatus ATCC 8483]
Length = 253
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 116/269 (43%), Gaps = 47/269 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + DI+C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GMEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMAWLEDFQKYVMELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L + D FR+ PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGYVDSFRTLCPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEP 226
>gi|372487554|ref|YP_005027119.1| exodeoxyribonuclease III [Dechlorosoma suillum PS]
gi|359354107|gb|AEV25278.1| exodeoxyribonuclease III [Dechlorosoma suillum PS]
Length = 261
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 114/270 (42%), Gaps = 47/270 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I++ N+NG+R ++ L + L + DADI+C QE K + +L ++ G+ +F
Sbjct: 2 LRIISLNLNGIRSAFNK--GLAEWLAAQDADIVCLQELKAQAPDLTPEMSNPPGFTGYFH 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +CR + ++ EG+
Sbjct: 60 YAE-----KKGYSGVGLWCRQQP-------------------------DRVSEGIGH--- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G+ + +VY P S R + K QF L +GR
Sbjct: 87 ---AGFDAEGRYIRADFGNLSVISVYVPSGSSSPE-RQEAKFQFMDEFAPVLAALQAEGR 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NIA ID + + + F R W + G + DV+R HPE
Sbjct: 143 EVVLCGDWNIAHREIDLKNWKGNLKNSGFLPEERAWIGDLFEHKG--WVDVYRRLHPEAT 200
Query: 237 -EAYTCWPSNTGAEQFNYGTRID-HILCAG 264
EAYT W + A N G RID HI G
Sbjct: 201 GEAYTWWSNRGQARAKNVGWRIDYHIATPG 230
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 127/268 (47%), Gaps = 52/268 (19%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K+V++NVNGLR + + DADI C QETKL+ +L+ ++ +GYE +++
Sbjct: 3 KLVSWNVNGLRSCIGK--GFWDFFKEVDADIFCVQETKLQEGQLELEI---EGYEHYWNY 57
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F ++K PV++ G G+E+
Sbjct: 58 AV-----KKGYSGTAIFTKIK----------PVSSSCGI-------------GIEEH--- 86
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQG 179
D+EGR + + F L NVY P + E R+++++++ + E+L L Q
Sbjct: 87 -----DNEGRVITLEFEEFFLVNVYTPNSKRE-LERLEYRMKWEDDFR---EYLKQLEQT 137
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERR 236
+ + + GD+N+A ID + + F + R S L+E G F D FR +P++
Sbjct: 138 KPVIICGDMNVAHQEIDLKNPRSNKRSAGFTMEEREKFSQLLEHG--FVDTFRMLYPDKT 195
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAG 264
AYT W + + N G RID+ +G
Sbjct: 196 GAYTWWSYMFKSREKNAGWRIDYFCVSG 223
>gi|282163799|ref|YP_003356184.1| exodeoxyribonuclease [Methanocella paludicola SANAE]
gi|282156113|dbj|BAI61201.1| exodeoxyribonuclease [Methanocella paludicola SANAE]
Length = 255
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 120/267 (44%), Gaps = 46/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++ +NVNGLR + + L DADI+C QETK +++ ++ GY F+S
Sbjct: 1 MRMLCWNVNGLRAVLKK--GFVDWLRREDADIVCIQETKAAAEQMPPEVTGIPGYH-FYS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
TS + GYSGVA F + + P + GF G+E
Sbjct: 58 ---TSPLEKKGYSGVALFTKEE----------PKSVSYGF-------------GIE---- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
K D EGR +I D+G F+L ++Y P R+ +K+ F+ + L +GR
Sbjct: 88 ----KYDIEGRTIIADYGKFVLLSIYFPNGKMSQE-RLDYKMGFYDAFLDYVDKLKAEGR 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ V GD+N A +D + K+ F R W E+ G F D FR +
Sbjct: 143 KVVVCGDVNTAHTELDIARPKENSKKSGFLPMEREWMDKF--EAHG-FIDTFRV-FEKAG 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
YT W + T A + N G RID+ +
Sbjct: 199 GHYTYWDTFTKARERNVGWRIDYFYVS 225
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 130/298 (43%), Gaps = 57/298 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L + DI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETNPDIFCVQETKLQEGQ-----ILMENMEEYTQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F ++K P++ G LE +G
Sbjct: 54 YWNYAEK--KGYSGTAIFTKIK----------PLSVHYG----LEENG------------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ EGR + + F L NVY P R S R++++ +F LQ+ L
Sbjct: 86 ------EPEGRTITLEFEKFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYLQQ-----LD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERR 236
+ + V GDLN+A ID +A ++ F R + + G F D FR +P+R
Sbjct: 135 ASKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRT 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 291
E Y+ W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 195 EVYSWWSYMPKVRERNIGWRIDYFLVSD----RLRPLLIDASIDCHITGSDHCPVILD 248
>gi|160889848|ref|ZP_02070851.1| hypothetical protein BACUNI_02279 [Bacteroides uniformis ATCC 8492]
gi|270294104|ref|ZP_06200306.1| exodeoxyribonuclease III [Bacteroides sp. D20]
gi|317478856|ref|ZP_07938007.1| exodeoxyribonuclease III [Bacteroides sp. 4_1_36]
gi|156860840|gb|EDO54271.1| exodeoxyribonuclease III [Bacteroides uniformis ATCC 8492]
gi|270275571|gb|EFA21431.1| exodeoxyribonuclease III [Bacteroides sp. D20]
gi|316905032|gb|EFV26835.1| exodeoxyribonuclease III [Bacteroides sp. 4_1_36]
Length = 254
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 133/298 (44%), Gaps = 54/298 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ + L D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GFPEWLAQEQPDVLCLQETKLQPEQYPAEALDALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILSKQE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + L+K E++L R
Sbjct: 89 ------DNEGRFIRADFGDVSVVSVYHPSGTSGDE-RQAFKMVW---LEKFQEYVLELER 138
Query: 181 ---RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
++ + GD NI AID D + + F R W L F D FR HP
Sbjct: 139 TRPKLILCGDYNICHEAIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDSFRWLHP 195
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
+++E YT W + N G RID+ + + P + + V H + C +L++
Sbjct: 196 DKQE-YTWWSYRFNSRAKNKGWRIDYCMVSEPVRPMLKEARILGDVV-HSDHCPMLLE 251
>gi|294659648|ref|XP_462042.2| DEHA2G11814p [Debaryomyces hansenii CBS767]
gi|199434123|emb|CAG90528.2| DEHA2G11814p [Debaryomyces hansenii CBS767]
Length = 565
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 152/363 (41%), Gaps = 78/363 (21%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRK----LLDSFDADIICFQETKLRRQELKS-DLVMAD 53
++ +++NVNG + + + L++ +S + D++ QE KL + + ++
Sbjct: 26 IRYISFNVNGAKTLFNYHPWNQLQQNYDLFFNSLEGDVVSLQELKLSPSNISNVNIGNLT 85
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRV---KSPFSSTEVALPVAAEEGFTGLLETSGSK 110
++SF S +T + GYSGV F R+ P V AEEG TG L S
Sbjct: 86 KFKSFISLPKT----KKGYSGVGLFVRIPETDEPEIVRHNLTVVKAEEGLTGFL-NSADY 140
Query: 111 IMEGLEDFSK-----------DEL--LKIDSEGRCV-ITDHGHFILFNVYGPRADSEDTV 156
D K DE+ LKIDSEGRCV I + I+F++Y P
Sbjct: 141 PQSRYRDLDKELSIGGYPEEIDEVKGLKIDSEGRCVCIELASNIIVFSLYCPANSIGSEE 200
Query: 157 RIQFKLQFFHVLQKRWEFLL-CQGRRIFVVGDLNIAPAAIDRCD---------------- 199
++L+F +L R +L G+ + ++GD+N++ ID D
Sbjct: 201 GESYRLEFLKILLGRCHYLKHIMGKDVIIIGDINVSLDLIDHADTMNEKVKQKIVKPVRN 260
Query: 200 ----AGPDFAKNEFR--IWFR--------------SMLVESGGS------FFDVFRSKHP 233
+G +F K ++ I F+ S L S + +D R
Sbjct: 261 GEGNSGTEFEKINYKQCIDFKVSTPARKLLNSYTISTLDPSPANRSESQFLYDTTRYTQG 320
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ---KHDLQSHNFVTCHVNECDILI 290
R YT W + TGA Q NYG+RID IL + L + K D+ + + H C I
Sbjct: 321 RRMGMYTVWNTLTGARQSNYGSRIDLILTSSDVLLKSISKADIWPYIMGSDH---CPIFT 377
Query: 291 DYK 293
D++
Sbjct: 378 DFE 380
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 59/287 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG R +++ ++ +ADI C QE+KL +++ L +GY +F+
Sbjct: 1 MKLISWNVNGFRSCLTK--GFLDFFNTVEADIFCIQESKLSAGQIELSL---EGYTQYFN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + S + +P+
Sbjct: 56 YAE-----RKGYSGTAVFTKKQPLTCSFGMGIPLH------------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ F L N+Y P + +E R++++L + +R+ L +
Sbjct: 86 ------DKEGRMITLEYDEFYLINLYAPNSQAE-LARLEYRLTWEEDF-RRYVQTLNSHK 137
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ GDLN+A ID R +AG +E R+ F S L+ESG F D FR +P
Sbjct: 138 PVIFCGDLNVAHQEIDLKNPQANRRNAG---FTDEERLKF-SELLESG--FIDTFRYLYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 280
E++++Y+ W A N G RID+ C L K LQS T
Sbjct: 192 EQKDSYSWWSYRFNARVRNAGWRIDY-FCMSERL--KDSLQSAEIYT 235
>gi|169787206|gb|ACA80042.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 27/191 (14%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRSDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLN 189
GRCV+ + F+L Y P + D+ R F+ + L R L+ G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRHGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 190 IAPAAIDRCDA 200
+ +D C+
Sbjct: 168 VTRDEMDTCNV 178
>gi|374628249|ref|ZP_09700634.1| exodeoxyribonuclease III [Methanoplanus limicola DSM 2279]
gi|373906362|gb|EHQ34466.1| exodeoxyribonuclease III [Methanoplanus limicola DSM 2279]
Length = 256
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 120/272 (44%), Gaps = 47/272 (17%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
++V++NVNG+R V + G L + + DI+C QETK +L S+L +GY S+FS
Sbjct: 4 RLVSWNVNGIRA-VHKKGFL-DFVKEYSPDILCIQETKAHEDQLPSELRHPEGYFSYFSS 61
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSGVA + + + P + GF GS
Sbjct: 62 AE-----KKGYSGVALYSKDE----------PESVRFGF-------GSD----------- 88
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 181
+ D+EGR +I D+ F LFN+Y P + R+ FKL F++ + E LL GR
Sbjct: 89 ---RFDTEGRIIIADYPDFSLFNIYFPNGKAS-AERLDFKLDFYNECLNQAEKLLADGRN 144
Query: 182 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 237
+ + GD+N A ID + + F R W +L F D FR E
Sbjct: 145 VIICGDVNTAHKEIDLARPKANENVSGFLPVERAWIDKLL---DAGFADSFRMFTKEGG- 200
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 269
Y+ + + A + N G RID+ + L
Sbjct: 201 YYSWYDLKSRARERNVGWRIDYFFVSKKFLEH 232
>gi|169787316|gb|ACA80097.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 31/193 (16%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
SEGRCV+ + F+L Y P + D+ R F+L + L R L+ G+++ + GD
Sbjct: 108 SEGRCVVLEFLVFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGD 165
Query: 188 LNIAPAAIDRCDA 200
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|257460806|ref|ZP_05625907.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
gi|257442137|gb|EEV17279.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
Length = 252
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 114/276 (41%), Gaps = 49/276 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + G L + D + QE K+ ++ L YE FS
Sbjct: 1 MKLISWNVNGLRAVLGKDGF--AWLAEQNPDFLGLQEIKVSEKDAPKGL-----YELGFS 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVA+ + KS ETS +
Sbjct: 54 QIDLNSAARAGYSGVASLAKFKS---------------------ETSKA----------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
L D EGR + G +LFN+Y P +D R+ +K++F+ L QG
Sbjct: 82 --LFFPDDEGRVLQHRFGDVVLFNIYFPNG-QKDEARLAYKMEFYAKFLAYARSLAEQGL 138
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ GD+N A ID + + + F R W VE+ G F D FR+ H E R
Sbjct: 139 GVIFCGDVNTAHREIDLANPKANSKTSGFLPIERAWLDE--VEAAG-FVDTFRAVHGELR 195
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
+AY+ W A N G RID+ + Q D
Sbjct: 196 DAYSWWSYRFNARAKNVGWRIDYFFISANLRSQLKD 231
>gi|323334754|gb|EGA76127.1| Apn2p [Saccharomyces cerevisiae AWRI796]
Length = 330
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 109/229 (47%), Gaps = 29/229 (12%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 11 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 69
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 70 FYSFISIP----QNRKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 125
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 126 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 185
Query: 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA 205
F+++F VL +R L G++I ++GD+N+ ID D F+
Sbjct: 186 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFS 234
>gi|423347898|ref|ZP_17325583.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL03T12C32]
gi|409215384|gb|EKN08385.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL03T12C32]
Length = 253
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 124/295 (42%), Gaps = 48/295 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + L + L D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVGK--GLPEWLAQEQPDVLCLQETKLQPEQYPAEAFEALGYKAWLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E
Sbjct: 59 SAQ-----KKGYSGVAILSRRE----------PDHVEYGM-------------GIE---- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
K D+EGR + D G + +VY P S D R FK+++ Q L
Sbjct: 87 ----KYDNEGRFIRADFGDLSVISVYHPSGTSGDE-RQAFKMEWLEDFQNYVMELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI ID D + + F R W L + D FR +P+++
Sbjct: 142 KLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---DAGYIDTFRLLNPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W A N G RID+ + + P Q N H + C +I+
Sbjct: 199 E-YTWWSYRFSARAKNKGWRIDYCMVSEPMKAQVEKAYILN-EAVHSDHCPAVIE 251
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 57/298 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L + DI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETNPDIFCVQETKLQEGQ-----ILMENMEEYTQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F ++K P++ G LE +G
Sbjct: 54 YWNYAEK--KGYSGTAIFTKIK----------PLSVHYG----LEENG------------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ EGR + + F L NVY P R S R++++ +F LQ+ L
Sbjct: 86 ------EPEGRTITLEFEKFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYLQQ-----LD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERR 236
+ + + GDLN+A ID +A ++ F R + + G F D FR +P+R
Sbjct: 135 ASKPVIICGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRT 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 291
E Y+ W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 195 EVYSWWSYMPKVRERNIGWRIDYFLVSD----RLRPLLIDASIDCHITGSDHCPVILD 248
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 41/262 (15%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
I T+NV+GLR + + G L +L DI+C QETK +L ++ +GYE+ + C
Sbjct: 995 ITTWNVDGLRSWLKK-GCL-DILKYDKPDILCIQETKCAVYKLPEEVKTIEGYETLWCC- 1051
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
SDK GY+GV + K P + ++ G++ SK+
Sbjct: 1052 --SDKD--GYAGVGIMVKDK-PLN------------------------VIYGID--SKEH 1080
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 182
D+EGRC+ ++ F + NVY P A + V + +L + +K + L Q + +
Sbjct: 1081 ----DTEGRCITVEYETFFVVNVYVPHA-GRNLVTLPKRLDWNEQFEKFIKNLDSQ-KPV 1134
Query: 183 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREAYTC 241
+ GD+N+A ID + + F + R M G + D++R +PE+ +AYT
Sbjct: 1135 IICGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGYVDIYRHLYPEKEKAYTF 1194
Query: 242 WPSNTGAEQFNYGTRIDHILCA 263
W A N G R+D+ L +
Sbjct: 1195 WIYMRNARPNNVGWRLDYFLVS 1216
>gi|319940717|ref|ZP_08015059.1| exodeoxyribonuclease III [Sutterella wadsworthensis 3_1_45B]
gi|319805868|gb|EFW02635.1| exodeoxyribonuclease III [Sutterella wadsworthensis 3_1_45B]
Length = 263
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 110/265 (41%), Gaps = 50/265 (18%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
+I+T+N NG+R R F LR + D++C QE K + +L DL G+ +
Sbjct: 2 FRIITFNANGIRSASRKGFFTWLRTM----SPDVLCMQELKAQESDLTEDLRTPLGFRGY 57
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
F C + + GYSG + RVK P A GF G +F
Sbjct: 58 FHCAQ-----KKGYSGCGLWSRVK----------PFAVRTGF-------------GNSEF 89
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
D+EGR V D G I+ +VY P S D R K +F + + L
Sbjct: 90 --------DAEGRYVEADFGSVIVISVYFPSGSSSDD-RQSAKFRFLDAFKVHMDELRQS 140
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 234
GR + + GD+NIA ID + + + F R W + G + DVFR P
Sbjct: 141 GREVIICGDINIAHKEIDLKNWKGNLDHSGFLPEERAWLDQRFGKEG--WVDVFRMLDP- 197
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDH 259
R E YT W A N G RID+
Sbjct: 198 RPERYTWWSQRGQARAKNVGWRIDY 222
>gi|29346040|ref|NP_809543.1| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|383122288|ref|ZP_09942982.1| exodeoxyribonuclease III (xth) [Bacteroides sp. 1_1_6]
gi|29337934|gb|AAO75737.1| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|382984421|gb|EES70705.2| exodeoxyribonuclease III (xth) [Bacteroides sp. 1_1_6]
Length = 253
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 116/270 (42%), Gaps = 47/270 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR S+ L + L + DI+C QETKL+ + +++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAASK--GLPEWLVQENPDILCLQETKLQPDQYPAEVFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L F D FR +PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMTSEPV 227
>gi|237719516|ref|ZP_04549997.1| exodeoxyribonuclease [Bacteroides sp. 2_2_4]
gi|293370159|ref|ZP_06616719.1| exodeoxyribonuclease III [Bacteroides ovatus SD CMC 3f]
gi|336413720|ref|ZP_08594069.1| exodeoxyribonuclease III [Bacteroides ovatus 3_8_47FAA]
gi|383111647|ref|ZP_09932456.1| exodeoxyribonuclease III (xth) [Bacteroides sp. D2]
gi|423286352|ref|ZP_17265203.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL02T12C04]
gi|423296139|ref|ZP_17274224.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL03T12C18]
gi|229451376|gb|EEO57167.1| exodeoxyribonuclease [Bacteroides sp. 2_2_4]
gi|292634656|gb|EFF53185.1| exodeoxyribonuclease III [Bacteroides ovatus SD CMC 3f]
gi|313696639|gb|EFS33474.1| exodeoxyribonuclease III (xth) [Bacteroides sp. D2]
gi|335934737|gb|EGM96720.1| exodeoxyribonuclease III [Bacteroides ovatus 3_8_47FAA]
gi|392670749|gb|EIY64227.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL03T12C18]
gi|392675039|gb|EIY68481.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL02T12C04]
Length = 253
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 116/269 (43%), Gaps = 47/269 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + DI+C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GMEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVMELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI ID D + + F R W L + D FR+ PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGYVDSFRTLCPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEP 226
>gi|154490204|ref|ZP_02030465.1| hypothetical protein PARMER_00436 [Parabacteroides merdae ATCC
43184]
gi|423721864|ref|ZP_17696040.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL09T00C40]
gi|154089096|gb|EDN88140.1| exodeoxyribonuclease III [Parabacteroides merdae ATCC 43184]
gi|409242877|gb|EKN35636.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL09T00C40]
Length = 253
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 124/295 (42%), Gaps = 48/295 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + L + L D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVGK--GLPEWLAQEQPDVLCLQETKLQPEQYPAEAFEALGYKAWLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E
Sbjct: 59 SAQ-----KKGYSGVAILSRRE----------PDHVEYGM-------------GIE---- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
K D+EGR + D G + +VY P S D R FK+++ Q L
Sbjct: 87 ----KYDNEGRFIRADFGDLSVISVYHPSGTSGDE-RQAFKMEWLEDFQNYVVELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI ID D + + F R W L + D FR +P+++
Sbjct: 142 KLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---DAGYIDTFRLLNPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W A N G RID+ + + P Q N H + C +I+
Sbjct: 199 E-YTWWSYRFSARAKNKGWRIDYCMVSEPMKAQVEKAYILN-EAVHSDHCPAVIE 251
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 126/273 (46%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +DSF DADI C QETKL+ +++ +L GYE
Sbjct: 1 MKLISWNVNGLRAAVT-----KGFIDSFNELDADIFCLQETKLQPHQIELEL---PGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F R+K P+A G G+E+
Sbjct: 53 FWNSAV-----KKGYSGTAVFTRIK----------PIAVTNGI-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + +F L Y P + E R+ +++ + + + L
Sbjct: 85 H--------DQEGRVITAEFDNFYLVCCYTPNSQRE-LARLDYRMAWEDAF-RAYLLELD 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG F+ E + L+ESG F D FR
Sbjct: 135 KKKPVILCGDLNVAHNEIDLKNPKTNRKNAG--FSDEERAK--MTTLLESG--FTDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+ + Y+ W A N G RID+ + +
Sbjct: 189 LYPDAVDEYSWWSYMGKARDRNVGWRIDYFITS 221
>gi|392412977|ref|YP_006449584.1| exodeoxyribonuclease III [Desulfomonile tiedjei DSM 6799]
gi|390626113|gb|AFM27320.1| exodeoxyribonuclease III [Desulfomonile tiedjei DSM 6799]
Length = 259
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 47/270 (17%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
+++++NVNG+R V + G L + L+ DI+C QE K + L+ L GY S+++C
Sbjct: 6 RLLSWNVNGIRG-VQKKGFL-EWLERESPDILCLQEIKAQPDNLEICLTEPPGYTSYWNC 63
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ R GYSGVA + + + T V L + +
Sbjct: 64 AQ-----RKGYSGVAVYTKER----PTSVGLTMGID------------------------ 90
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 181
+ D EGR + D FILFNVY P R+Q+K++F+ + L + R
Sbjct: 91 ---RFDVEGRFLRLDFPDFILFNVYFPNGKMGPE-RLQYKMEFYDAFLSMLQELRKEQPR 146
Query: 182 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 237
+ VGD+N A ID + + F R W ++ E + D FR +P+ E
Sbjct: 147 LVFVGDVNTAHNEIDLARPKANEKVSGFLPIERRWMDKVVSE---GYVDTFRHAYPDAVE 203
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
Y+ W +GA + N G RID++ L
Sbjct: 204 -YSWWDLKSGARKRNVGWRIDYVFVTKEML 232
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 126/272 (46%), Gaps = 60/272 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++V++NVNGLR + + + L+ ADI C QETK++ ++ +GY +F++
Sbjct: 1 MRLVSWNVNGLRACMQK--GFKDFLEQSGADIFCVQETKMQPEQANFAF---EGYHAFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV T + + P++ G G+ E
Sbjct: 56 SAV-----KKGYSGVLTLSKEE----------PLSVRYG-IGIAEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D EGR V+ ++ F L NVY P A +R+ ++L + + FL L
Sbjct: 86 ------DLEGRVVVCEYSQFYLVNVYVPNAQ-RGLLRLPYRLSWEKAFRG---FLSGLVA 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + V GDLN+A ID R +AG F+ E R F ++L E F D +R
Sbjct: 136 HKGVLVCGDLNVAHTEIDLTNPQANRYNAG--FSDPE-RHAFSALLQEG---FIDTYRHF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE++EAYT W A + N G RID+ L +
Sbjct: 190 YPEQKEAYTWWSYIGQARERNVGWRIDYFLAS 221
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 124/280 (44%), Gaps = 50/280 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V + + DADI C QETKL QE + DL + GY +++
Sbjct: 1 MKLVSWNVNGLRACVRK--GFLNYFEEVDADIFCVQETKL--QEGQIDLNLP-GYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P+ + G G+E+
Sbjct: 56 YAE-----KKGYSGTAVFTKDK----------PLDVKYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P + E T R+ ++ +F + L++ L
Sbjct: 86 ------DKEGRVITLEFEDFYLVNVYTPNSQRELTRLDYRMTWEDEFRNYLKE-----LD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERR 236
+ + + GDLN+A ID + + F R + E G+ F D FR +P++
Sbjct: 135 SIKPVILCGDLNVAHKEIDLKNPSTNRRNAGFTDEERGKMTELLGTGFIDTFRYFYPDKE 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+AYT W A N G RID+ + + + D Q H
Sbjct: 195 DAYTWWSYMRKARDRNVGWRIDYFIVSERFKDRLKDAQIH 234
>gi|413952189|gb|AFW84838.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 530
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 48/280 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELK--SDLVMADGY-E 56
+KI+++NVNGL+ + G S+++L D D++C QETK++ ++++ D ++ DGY
Sbjct: 270 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLL-DGYTN 328
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
SF++C+ + + GYSG A RVK P++ + G G+
Sbjct: 329 SFWTCSVS----KLGYSGTAIISRVK----------PLSIKYGL-------------GIS 361
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
D D+EGR V + F L Y P + + R+ +++ + + L
Sbjct: 362 DH--------DTEGRVVTVEFDDFYLLTAYVPNS-GDGLKRLTYRVTEWDPSLGNYMKEL 412
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----NEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + + GDLN A ID D + NE R F + + G F D FR +H
Sbjct: 413 EKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTNEERESFGTNFLSKG--FVDTFRKQH 470
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
P AY+ W A + N G R+D+ L + + HD
Sbjct: 471 PN-VVAYSYWGYRHNARKTNKGWRLDYFLVSESITEKVHD 509
>gi|73670688|ref|YP_306703.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
gi|72397850|gb|AAZ72123.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
Length = 258
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 113/265 (42%), Gaps = 47/265 (17%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR V + G L LL+ DI+C QETK+ +L + GY ++F
Sbjct: 7 LISWNVNGLRA-VMKKGFLELLLEQ-KFDIVCIQETKVSPDKLPREAKNIPGYYNYFVSA 64
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
+ GYSGV F + K P+ E G G+E F
Sbjct: 65 E-----KNGYSGVGLFSKKK----------PLKLETGM-------------GIEKF---- 92
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 182
D EGR + D F L N+Y P + R+++K+ F+ L +G+R+
Sbjct: 93 ----DKEGRFLRADFEDFTLMNIYFPNGKA-SLERLEYKMSFYEAFLDYANSLKAEGKRL 147
Query: 183 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 238
+ GD+N A +D + + F R W L + D FR +PE
Sbjct: 148 VICGDVNTAHKELDLARPKQNETISGFLPEERAWMDKFLA---AGYLDTFRMFNPEGGN- 203
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCA 263
Y+ W TGA + N G R+D+ +
Sbjct: 204 YSWWSMRTGARKRNVGWRLDYFFVS 228
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 127/284 (44%), Gaps = 65/284 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ ++ DAD+ C QE+K+ R + SD V DGY F+
Sbjct: 1 MKMISWNVNGLRACMTK--GFMDFFNTIDADVFCIQESKMHRSQ--SDFVF-DGYYQFW- 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ + GYSG S TE L V + G
Sbjct: 55 ----NEAEKKGYSGTII-------LSKTE-PLSVCNDMG--------------------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQKRWEFLLC 177
+ D EGR ++ ++ F L NVY P + E T R +++ F L+ L
Sbjct: 82 --IAHHDKEGRIIVAEYATFFLVNVYTPNSKRELERLTYRQEWEDDFRSFLKG-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
Q + + V GDLN+A ID R +AG F E S+L++SG F D +R
Sbjct: 135 QYKPVIVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSVLLDSG--FIDSYRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHIL---CAGPCLHQKH 271
+P++ AYT W A Q N G RID+ L C L + H
Sbjct: 189 FYPDKEHAYTWWSYMGKARQNNTGWRIDYFLLSRCLAKNLKEAH 232
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 121/272 (44%), Gaps = 60/272 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNGLR V+ + LD F DAD C QETKL+ +++ DL GY
Sbjct: 1 MKFISWNVNGLRAIVN-----KNFLDVFHELDADFFCLQETKLQAGQIELDL---PGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ R GYSG A F + E AL V+ G D
Sbjct: 53 YWNYAE-----RKGYSGTAIFAK--------EPALNVSYGMGI----------------D 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEF 174
D EGR + ++ F L Y P + +E R+Q++ F+H L++
Sbjct: 84 LH-------DQEGRLITLEYPEFFLVTCYTPNSQNELKRLDYRLQWEEAFYHYLEE---- 132
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSK 231
L + + + V GDLN+A ID + + F + R S L+ +G F D FR
Sbjct: 133 -LKKQKPVIVCGDLNVAHQEIDLKNWKTNQKNAGFTMEERTAFSHLLANG--FIDTFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE+ Y+ W A + N G RID+ L +
Sbjct: 190 YPEQTGIYSWWSYRFNARKNNAGWRIDYFLTS 221
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 117/264 (44%), Gaps = 42/264 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI T+NV+G+R + + G + DADII QETK + ++ ++ ++ GY +F
Sbjct: 75 LKICTWNVSGIRAVIKKNG--LDYIAKEDADIIALQETKCGKDKMPDEIKLS-GYHHYFL 131
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D ++GY GVA FC+ K PV+ + G
Sbjct: 132 -----DSKQSGYCGVALFCKEK----------PVSVKYGLNNS----------------- 159
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR + + F + NVY P A + V + +L++ + +K E L Q +
Sbjct: 160 ----NFDSEGRIIAAEFPEFFMVNVYVPNA-GQKLVTLPKRLEWNKIFKKYIE-ELDQKK 213
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GD+N+A ID + + F R + + F D FR +P++ AY
Sbjct: 214 PVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFLAAGFIDTFRLLYPDKEGAY 273
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
T W A + G R+D+ L +
Sbjct: 274 TFWSYFANARNKDIGWRLDYFLAS 297
>gi|399573808|gb|AFP49243.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
gi|399573810|gb|AFP49244.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
Length = 228
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 27/180 (15%)
Query: 35 FQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV 94
QETK++R++L+ D+V+ G++ FS K + GYSGVA + R P+
Sbjct: 1 MQETKIQRKDLQDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR-------NATCCPI 49
Query: 95 AAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSEGRCVITDHGHF 140
AEEG TG+L S + + + + + L +DSEGRCV+ + F
Sbjct: 50 RAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSEGRCVVLEFPAF 109
Query: 141 ILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
+L Y P + D+ R F+L++ + L R L+ G+++ + GDLN+ +D C+
Sbjct: 110 VLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLNVIRGEMDTCNV 167
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 135/324 (41%), Gaps = 76/324 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR + + + + DAD C QETK+ Q ++D +GY +
Sbjct: 1 MKFVSWNVNGLRACLKK--GFEETFRTLDADFFCIQETKM--QPGQADFA-PEGYTEYIY 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++DK GYSG A + R T + GLE+
Sbjct: 56 ---SADK--KGYSGTAIWAR-------------------------TPALSVRYGLEEDLH 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ EGR + ++ F L N+Y P + +E RI +++Q+ L++ + L Q +
Sbjct: 86 NH------EGRAITLEYPDFYLVNLYVPNSQNE-LARIDYRMQWEDDLRRYLQALDAQ-K 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID + GP+ F R L E F D FR HP+ Y
Sbjct: 138 PVILCGDLNVAHTEIDLKNPGPNRGAAGFSDQERGKLDELLAAGFTDTFRHLHPDATGIY 197
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
+ W A + N G RID+ L + N + + + DIL+D
Sbjct: 198 SWWSMRFRARERNAGWRIDYFLVS-------------NRLAPQIRKADILMD-------- 236
Query: 300 APRWKGGMSTRLEGSDHAPVYMCL 323
+ GSDH PV + L
Sbjct: 237 -----------ILGSDHCPVTLEL 249
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 120/267 (44%), Gaps = 50/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V + LD F DADI C QETKL+ +++ DL GY
Sbjct: 1 MKLVSWNVNGLRACVR-----KGFLDYFQEVDADIFCVQETKLQSGQIELDL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S + GL D
Sbjct: 53 YWNYAE-----KKGYSGTAVFTK-EEPLS------------------------VHYGLGD 82
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ EGR + + F L NVY P + D R+ ++L++ + + + L
Sbjct: 83 VENE------PEGRIITLEFPKFYLVNVYTPNS-QRDLARLPYRLEWEDRI-RSYLIDLD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERR 236
+ + + + GDLN+A ID + + + F R+ + E F D FR +PE+
Sbjct: 135 KDKPVLLCGDLNVAHQEIDLRNPKSNQGNSGFTKEERAKMSELLNAGFIDTFRYFYPEKE 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
AYT W A + N G RID+ + +
Sbjct: 195 GAYTWWSYINKARERNIGWRIDYFIAS 221
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 55/297 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L DADI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETDADIFCVQETKLQEGQ-----ILMENMEEYAQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F ++K P S + GLE+
Sbjct: 54 YWNYAEK--KGYSGTAIFTKIK-PLS------------------------VHYGLEENE- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ EGR + + F L NVY P D R+ ++L++ + + L Q +
Sbjct: 86 ------EPEGRTITLEFEKFYLVNVYTPNT-KRDLSRLPYRLEWEDRFRSYLQQLDAQ-K 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERRE 237
+ + GDLN+A ID +A ++ F R S L+ +G F D FR +P+R +
Sbjct: 138 PVIICGDLNVAHQEIDLKNAKANYGNAGFTPEERDRMSQLLNAG--FIDTFRYFYPDRTD 195
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 291
Y+ W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 196 VYSWWSYMPKVRERNIGWRIDYFLVS----ERLRPLLMDASIDCHITGSDHCPVILD 248
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 117/264 (44%), Gaps = 42/264 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI T+NV+G+R + + G + DADII QETK + ++ D V GY +F
Sbjct: 104 LKICTWNVSGIRAVIKKHG--LDYITKEDADIIALQETKCDKGKM-PDEVKLPGYHHYF- 159
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GY GVA F + K P++ + GL D +
Sbjct: 160 ----LDSKKPGYCGVALFSKEK----------PIS---------------VKYGLNDST- 189
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + + F + NVY P A + V + +L++ + +K E L Q +
Sbjct: 190 -----FDTEGRIITVEFPEFFVINVYVPNA-GQKLVTLPKRLEWNKLFKKHIE-ELDQKK 242
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GD+N+A ID + + F R+ + + F D FRS +PE AY
Sbjct: 243 PVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERNDMTDFLAAGFIDTFRSLYPEIEGAY 302
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
T W A N G R+D+ L +
Sbjct: 303 TFWSYFANARSKNIGWRLDYFLIS 326
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DS DADI C QETKL+ ++ DL GY+ +++
Sbjct: 1 MKLISWNVNGLRAVVKK--GFLEYFDSVDADIFCLQETKLQAGQIDLDL---PGYKDYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ + G G+E+
Sbjct: 56 YAV-----KKGYSGTAIFTKKE----------PLSVQYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + + +F + VY P + +E R+ +++ F + + L + +
Sbjct: 86 ------DTEGRVITLEFENFFMVTVYTPNSQAE-LKRLDYRMTFEDAILAYVK-KLDETK 137
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P
Sbjct: 138 PVILCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTAFL-EAG--FVDSFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ +AY+ W A N G RID+ + +
Sbjct: 192 DLEDAYSWWSYRMNARARNTGWRIDYFVVS 221
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 120/283 (42%), Gaps = 69/283 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R V + LD F DADI C QE+K++ +LK +L +GY
Sbjct: 1 MKFISWNVNGIRACVQ-----KGFLDFFKEADADIFCIQESKMQEGQLKLEL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ R GYSG A F + + P S VA + EE
Sbjct: 53 FWNYAE-----RKGYSGTAIFTK-QEPLS---VAYGIGMEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEF 174
D EGR + + F VY P + +E R+Q++ +F L+K
Sbjct: 86 ---------DKEGRVITLEFEEFYFVTVYTPNSQNELARLDYRMQWETEFLKYLKK---- 132
Query: 175 LLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + GDLN+A ID R +AG +E R F +L F D
Sbjct: 133 -LEAKKPVIFCGDLNVAHREIDLKNPKTNRKNAG---FTDEERGKFTELL---SAGFIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
FR +PE+ Y+ W A N G RID+ C CL +
Sbjct: 186 FRYFYPEQEGIYSWWSYRFSARAKNAGWRIDY-FCVSECLKDR 227
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 125/281 (44%), Gaps = 61/281 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE-SF 58
+K++++NVNGLR + G S +L + D++CFQETKL+ A GYE SF
Sbjct: 237 VKLMSWNVNGLRALLKLEGFSAVELAQRENFDVLCFQETKLQ----------AKGYENSF 286
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++C+ + + GYSG A RVK P++ G G+ D
Sbjct: 287 WTCSHS----KLGYSGTAIVSRVK----------PLSVSYGL-------------GIADH 319
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
DSEGR V + F L N Y P + + R+ +++ + + + L +
Sbjct: 320 --------DSEGRLVTAEFDSFYLLNAYVPNS-GDGLKRLSYRVSQWDLSLSNYMKELEK 370
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN A ID R +AG +E R F + + G F D FR +
Sbjct: 371 SKPVILNGDLNCAHQEIDIYNPAGNRRNAG---FTDEERQSFETNFLSRG--FVDSFRKQ 425
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
HP+ YT W G + N G R+D+ L + Q HD
Sbjct: 426 HPDVV-GYTYWGYRHGGRKTNKGWRLDYFLVSESISDQVHD 465
>gi|423306329|ref|ZP_17284328.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T00C23]
gi|423309121|ref|ZP_17287111.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T12C37]
gi|392679064|gb|EIY72457.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T00C23]
gi|392685860|gb|EIY79171.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T12C37]
Length = 254
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 54/298 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ + L D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GFPEWLAQEQPDVLCLQETKLQPEQYPAEALDALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILSKQE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + L+K E++L R
Sbjct: 89 ------DNEGRFIRADFGDVSVVSVYHPSGTSGDE-RQAFKMVW---LEKFQEYVLELER 138
Query: 181 ---RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
++ + GD NI A+D D + + F R W L F D FR HP
Sbjct: 139 TRPKLILCGDYNICHEAMDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDSFRWLHP 195
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
+++E YT W + N G RID+ + + P + + V H + C +L++
Sbjct: 196 DKQE-YTWWSYRFNSRAKNKGWRIDYCMVSEPVRPMLKEARILGDVV-HSDHCPMLLE 251
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 121/273 (44%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + ++ DAD C QETK++ +L DL Y +++
Sbjct: 1 MKFISWNVNGLRAVVKK--DFEAEFEALDADFFCIQETKMQENQLSLDL---PNYHQYYN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG F + + P++ G
Sbjct: 56 YAE-----QKGYSGTGIFTKHE----------PLSVHYGIN------------------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ ++D EGR + ++ F L Y P + E R+ F++Q+ Q +LL +
Sbjct: 82 --VPELDHEGRTITLEYKSFFLVTCYTPNSGHE-LKRLDFRMQWDPAFQS---YLLKLNK 135
Query: 181 R--IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
R + + GDLN+A + ID +AG D + F + L++SG F D +R
Sbjct: 136 RKPVIICGDLNVAHSEIDLKSPTSNHHNAGFTDEERENF-----TTLLDSG--FIDTYRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+++E Y+ W T A + N G RID+ L +
Sbjct: 189 FYPDKKEKYSWWSYRTKAREVNSGWRIDYFLAS 221
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 127/270 (47%), Gaps = 54/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +D F DADI C QETKL QE + L + + Y
Sbjct: 1 MKLISWNVNGLRACVN-----KGFIDYFKASDADIFCVQETKL--QEGQICLELGESYRQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F R++ P S + G+E+
Sbjct: 54 YWNYAE-----KKGYSGTAVFTRIE-PLS------------------------VRYGMEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ EGR + + F L VY P A D R++++L++ ++ + L
Sbjct: 84 -------DREPEGRMITLEFESFYLVTVYTPNA-KRDLSRLEYRLEWEERFRRYLQELDA 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPE 234
+ + + V GDLN+A +D +A + + F R + L+++G F D FR ++P+
Sbjct: 136 R-KPVIVCGDLNVAHQEMDLKNAKSNHGNSGFTPEERDKMTRLLDAG--FTDTFRHRYPD 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAG 264
R +AYT W + N G RID+ L +
Sbjct: 193 RTDAYTWWSFMPKVRERNIGWRIDYFLVSA 222
>gi|224534803|ref|ZP_03675375.1| exodeoxyribonuclease III [Borrelia spielmanii A14S]
gi|224514051|gb|EEF84373.1| exodeoxyribonuclease III [Borrelia spielmanii A14S]
Length = 255
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 122/268 (45%), Gaps = 53/268 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L SDL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVREYTPDILCVQETKALREQLPSDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +I + F+L N Y P + + R+ +KL F ++ + + G+
Sbjct: 87 ------DNEGRGLIAYYSDFVLINGYFPNSQALRR-RLVYKLDFLSYVENLVDSFVNGGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDRFLNKGYVDTFRIF-NKEP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILC 262
YT W T A + N G RID+ +
Sbjct: 196 --GYYTWWSYRTRAREKNMGWRIDYFIV 221
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 128/280 (45%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ DL +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLDL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAL-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R ++E G F D +R +
Sbjct: 136 EKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKITR--VLEEG--FIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
PE+ AY+ W GA N G R+D+ + + H+ D
Sbjct: 192 PEQEGAYSWWSYRMGARAKNIGWRLDYFIISERLKHKILD 231
>gi|333030586|ref|ZP_08458647.1| exodeoxyribonuclease III Xth [Bacteroides coprosuis DSM 18011]
gi|332741183|gb|EGJ71665.1| exodeoxyribonuclease III Xth [Bacteroides coprosuis DSM 18011]
Length = 253
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 119/268 (44%), Gaps = 49/268 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR ++ L + L + D++C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIVTYNVNGLRAATTK--GLPEWLAETNPDVVCIQETKLQPDQYPAEPYEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA +V+ P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKVE----------PDHVEYGM-------------GIEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+Q+ Q L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGD-ARQDFKMQWLSDFQNYVLELRKTRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W S L ++G F D FR H E
Sbjct: 142 NLILCGDYNICHEEIDIHDPKGN-AKNSGFLPEERAWMTSFL-DTG--FSDSFRRFHAET 197
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
++ YT W A N G RID+ + +
Sbjct: 198 QK-YTWWSYRFKARSKNKGWRIDYCMVS 224
>gi|410679307|ref|YP_006931709.1| exodeoxyribonuclease III [Borrelia afzelii HLJ01]
gi|408536695|gb|AFU74826.1| exodeoxyribonuclease III [Borrelia afzelii HLJ01]
Length = 255
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 122/268 (45%), Gaps = 53/268 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRSVLKK--GFLEFVREYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +I + F+L N Y P + + R+ +KL F ++ + + G+
Sbjct: 87 ------DNEGRGLIAHYEDFVLINGYFPNSQALRR-RLVYKLDFLSYVENLIDSFVNDGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
I + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NIIICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILC 262
YT W T A + N G RID+ +
Sbjct: 196 --GYYTWWSYRTRAREKNIGWRIDYFIV 221
>gi|111115360|ref|YP_709978.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
gi|216263647|ref|ZP_03435642.1| exodeoxyribonuclease III [Borrelia afzelii ACA-1]
gi|384207022|ref|YP_005592744.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
gi|110890634|gb|ABH01802.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
gi|215980491|gb|EEC21312.1| exodeoxyribonuclease III [Borrelia afzelii ACA-1]
gi|342856906|gb|AEL69754.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
Length = 255
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 122/268 (45%), Gaps = 53/268 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVREYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +I + F+L N Y P + + R+ +KL F ++ + + G+
Sbjct: 87 ------DNEGRGLIAHYEDFVLINGYFPNSQALRR-RLVYKLDFLSYVENLIDSFVNDGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
I + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NIIICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILC 262
YT W T A + N G RID+ +
Sbjct: 196 --GYYTWWSYRTRAREKNIGWRIDYFIV 221
>gi|218259778|ref|ZP_03475367.1| hypothetical protein PRABACTJOHN_01026 [Parabacteroides johnsonii
DSM 18315]
gi|423344446|ref|ZP_17322158.1| exodeoxyribonuclease III (xth) [Parabacteroides johnsonii
CL02T12C29]
gi|218224906|gb|EEC97556.1| hypothetical protein PRABACTJOHN_01026 [Parabacteroides johnsonii
DSM 18315]
gi|409212844|gb|EKN05878.1| exodeoxyribonuclease III (xth) [Parabacteroides johnsonii
CL02T12C29]
Length = 253
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 123/295 (41%), Gaps = 48/295 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + L + L D++C QETKL+ + ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVGK--GLPEWLAQEQPDVLCLQETKLQPDQYPAEAFEALGYKAWLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E
Sbjct: 59 SAQ-----KKGYSGVAILSRRE----------PDHVEYGM-------------GIE---- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
K D+EGR + D G + +VY P S D R FK+++ Q L
Sbjct: 87 ----KYDNEGRFIRADFGDLSVISVYHPSGTSGDE-RQAFKMEWLEDFQNYVVELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI ID D + + F R W L + D FR +P+++
Sbjct: 142 KLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---DAGYIDTFRLLNPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
E YT W A N G RID+ + + P Q N H + C +I+
Sbjct: 199 E-YTWWSYRFSARAKNKGWRIDYCMVSEPMKAQVEKAYILN-EAVHSDHCPAVIE 251
>gi|429463013|ref|YP_007184476.1| endonuclease [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|429338527|gb|AFZ82950.1| endonuclease [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
Length = 261
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 53/268 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
++I + NVNG+R + +K LD + DI+C QE ++ ++K++L+ G++
Sbjct: 2 LRITSINVNGIRSAIK-----KKFLDWLYNKNPDIVCLQEIRIASHDIKNELLNPLGFKG 56
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
FF + + GYSGV + + K P KI GLED
Sbjct: 57 FFYPAQ-----KNGYSGVGIYTK-KQPM------------------------KITRGLED 86
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRA--DSEDTVRIQFKLQFFHVLQKRWEFL 175
+ IDSEGR + D + NVY P D ++ F +F L++ +
Sbjct: 87 KN------IDSEGRVIRIDWEKISIINVYFPSGSNDERQKAKLIFLQKFELYLKEIYSES 140
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSK 231
+ R + + GD NIA +D + + K F R W ++ + + DVFR
Sbjct: 141 ILSKRNLLICGDWNIAHTQMDIKNWKNNLNKPGFLPEERNWLSEII--NNYNLVDVFRKL 198
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDH 259
HP +E YT W + + + N G RID+
Sbjct: 199 HPH-QEQYTWWSNRARSWERNVGWRIDY 225
>gi|451811792|ref|YP_007448247.1| exodeoxyribonuclease III [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776950|gb|AGF47949.1| exodeoxyribonuclease III [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 270
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 53/268 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
++I + NVNG+R + +K LD + DI+C QE ++ ++K++L+ G++
Sbjct: 11 LRITSINVNGIRSAIK-----KKFLDWLYNKNPDIVCLQEIRIASHDIKNELLNPLGFKG 65
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
FF + + GYSGV + + K P KI GLED
Sbjct: 66 FFYPAQ-----KNGYSGVGIYTK-KQPM------------------------KITRGLED 95
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRA--DSEDTVRIQFKLQFFHVLQKRWEFL 175
+ IDSEGR + D + NVY P D ++ F +F L++ +
Sbjct: 96 KN------IDSEGRVIRIDWEKISIINVYFPSGSNDERQKAKLIFLQKFELYLKEIYSES 149
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSK 231
+ R + + GD NIA +D + + K F R W ++ + + DVFR
Sbjct: 150 ILSKRNLLICGDWNIAHTQMDIKNWKNNLNKPGFLPEERNWLSEII--NNYNLVDVFRKL 207
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDH 259
HP +E YT W + + + N G RID+
Sbjct: 208 HPH-QEQYTWWSNRARSWERNVGWRIDY 234
>gi|50290925|ref|XP_447895.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527206|emb|CAG60844.1| unnamed protein product [Candida glabrata]
Length = 505
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/381 (26%), Positives = 152/381 (39%), Gaps = 98/381 (25%)
Query: 1 MKIVTYNVNGLRQ--RVSQFG----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ VT+NVNG+R + F SLR + D F++D+I FQE K L + DG
Sbjct: 12 IRFVTFNVNGVRTFFHYAPFSEMRQSLRSVFDWFESDVITFQELKTEPLSL-NKWGKVDG 70
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKIME 113
+ SF S + R GYSGV + R+ S AL V AEEG TG LE K
Sbjct: 71 FYSFISIPQK----RKGYSGVGCWVRIPPRDSPKYNALQVLRAEEGITGYLEVKNGKQSV 126
Query: 114 GLED------------------FSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSED 154
D S + L++DSEGRCVI + ++ +VY P +
Sbjct: 127 SYRDDSEIGIGGYIPDDSLPDHISTSDALQLDSEGRCVIVELKCGIVVISVYCPANSTCT 186
Query: 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDF---------- 204
F++++ +L R L G+ + ++GDLNI ID + ++
Sbjct: 187 DEGEVFRMRYLKLLFARIRNLQMMGKMVVLMGDLNICRDLIDHAVSLEEYHISIGNESTG 246
Query: 205 --AKNEFR--------------------IWFRSMLVESGGSF--FDVFRS-KHPERREAY 239
E+R I SM+ + F D R + +R + Y
Sbjct: 247 TQIDEEYRDFAIKFIVNPEVPHRLLLNQILDDSMVPNTDNEFCLIDTTRKVQGRDRLKMY 306
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 299
T W + N+G+RID IL + DL + ++ + DIL D
Sbjct: 307 TVWNTLKNTRPSNFGSRIDFILVS-------KDLGN------NIEKADILPD-------- 345
Query: 300 APRWKGGMSTRLEGSDHAPVY 320
+ GSDH PV+
Sbjct: 346 -----------INGSDHCPVF 355
>gi|399573818|gb|AFP49248.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 228
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 27/180 (15%)
Query: 35 FQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV 94
QETK++R++L D+V+ G++ FS K + GYSGVA + R + P+
Sbjct: 1 MQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR-------NAICCPI 49
Query: 95 AAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSEGRCVITDHGHF 140
AEEG TG+L S + + + + + L +DSEGRCV+ + F
Sbjct: 50 RAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSEGRCVVLEFPAF 109
Query: 141 ILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
+L Y P + D+ R F+L++ + L R L+ G+++ + GDLN+ +D C+
Sbjct: 110 VLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLNVIRDEMDTCNV 167
>gi|442751465|gb|JAA67892.1| Putative ap endonuclease [Ixodes ricinus]
Length = 147
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 19/141 (13%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR S ++ LL DADIICFQETK R L+ + DGY +FFS
Sbjct: 1 MKLISWNINGLR---SFKAGVKGLLAELDADIICFQETKATRSVLEETSAIVDGYSAFFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL---LETSGSKIMEG-LE 116
R ++GYSGVATFC+ + P AAEEG T L LE S G
Sbjct: 58 FPRY----QSGYSGVATFCK--------DAYRPFAAEEGLTELWTSLECPDSLGCYGDTS 105
Query: 117 DFSKDELLKIDSEGRCVITDH 137
DF + +D EGR V+T H
Sbjct: 106 DFDSKHISSVDGEGRTVLTLH 126
>gi|209878826|ref|XP_002140854.1| endonuclease/exonuclease/phosphatase family protein
[Cryptosporidium muris RN66]
gi|209556460|gb|EEA06505.1| endonuclease/exonuclease/phosphatase family protein
[Cryptosporidium muris RN66]
Length = 482
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 180/435 (41%), Gaps = 124/435 (28%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSF-----------------DADIICFQETKLRRQEL 45
IV++NVNG + + G + SF I+C QE K+ +E
Sbjct: 5 IVSFNVNGFIPCLIRKGYKENEISSFLDEIYSSEVPWNGVELPRPSIVCIQECKMNSEE- 63
Query: 46 KSDLVMADG----YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFT 101
D+ G + +F+S + YSGVATFCR + A P A GF+
Sbjct: 64 --DINYCTGCPNRHHAFYSLPTNYKR----YSGVATFCR-------KDEATPREATSGFS 110
Query: 102 ------GLLETSGSKIM-EGLEDFSKDELLK--------------IDSEGRCVITDHGHF 140
+ + S+I + +++F+ +E+LK +D EGRC+ITDH F
Sbjct: 111 WIEKEDKIFKIEDSEIYSDEIKEFNYEEILKEPKNYRKFDYSLSDMDIEGRCIITDHVDF 170
Query: 141 ILFNVYGP-----RADS-EDT------VRIQFKLQFFHVLQKRWEFLLCQGRR-IFVVGD 187
+L N+Y P AD+ E+T R ++L F L+ + + + +R + +VGD
Sbjct: 171 LLVNLYLPLVRKVLADNFENTDNLASLTRASYRLAFNQYLRLMLDVITTKNKRDVILVGD 230
Query: 188 LNIAPAAID--------RCDAGPDFAKNE--------FRIWFRSM-----LVESGGSFFD 226
+N+ ID + D F + E + +++ + L+ + D
Sbjct: 231 MNVTLDDIDSYYEYNTCKKDRVGHFKELEDLMDISSSYSLFYNQIRTDMKLLLRDFNLID 290
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
+R +P + YTCW + N G+RID L S N + V C
Sbjct: 291 AYRLFYPGKINKYTCWDQTKCSRINNRGSRIDLFLV------------SRNLIN-RVKGC 337
Query: 287 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-GEVPEIPQHSTPSLASRYLPII 345
+I+ + GSDH P+ + + G + I ++ PSL S+YLP
Sbjct: 338 EII-------------------DNVCGSDHCPIVLIMSGNLQNINPNTPPSLCSKYLPSC 378
Query: 346 RGVQQTLVSVLMKRE 360
++Q+L+S +E
Sbjct: 379 -ILKQSLLSNFFVKE 392
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 117/274 (42%), Gaps = 61/274 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R S+ + L DAD I QETK + ++ L DGY + +
Sbjct: 1 MKIISWNVNGVRAVQSK--GFAETLALLDADCILLQETKAQADQIDKALEGIDGYRVYSN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C R GYSGV R K P L+ S
Sbjct: 59 CAE-----RKGYSGVTILSR-KEP------------------------------LQVISD 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQKRWE 173
+++ D EGR ++ + +F L NVY P R D T I+F L + LQK+
Sbjct: 83 IGIVEHDREGRVIVAEFENFFLLNVYVPNSGEALARLDYRQTWDIEF-LAYCRQLQKKKP 141
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFR 229
+ C GD N+A ID P++ K+ + I S +++G D FR
Sbjct: 142 LIAC--------GDFNVAHQEIDIARPKPNYNKSAGYTQVEIDGFSRFLDAG--LVDTFR 191
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
HP+ AY+ W GA N G RID++L +
Sbjct: 192 HFHPD-TVAYSWWSFRGGARARNVGWRIDYVLTS 224
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 132/280 (47%), Gaps = 63/280 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+++V++NVNGLR V + +++ DADI C QETKL QE + DL + D Y+ +
Sbjct: 2 IQLVSWNVNGLRACVKK--GFLDVMEQLDADIFCIQETKL--QEGQIDLELPDYYQYW-- 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F ++K P++ + G G+++F
Sbjct: 56 ----NYAEKKGYSGTAVFTKIK----------PLSVKNGI-------------GVDEF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC--Q 178
D EGR + + + L Y P + SE R+ +++ + + E+LL +
Sbjct: 87 ------DHEGRVITLEFDDYFLVTCYTPNSQSE-LARLSYRMDWEENFR---EYLLKLEE 136
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + GDLN+A ID R +AG D + +F + L+E+G F D FR
Sbjct: 137 DKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKF-----TKLLEAG--FIDTFRH 189
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+P+ EAY+ W A + N G RID+ C L ++
Sbjct: 190 FYPDVTEAYSWWSYRFRAREKNAGWRIDY-FCVSEGLEER 228
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 130/292 (44%), Gaps = 76/292 (26%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYESF 58
K++++NVNGLR V + LD F DADI C QETKL+ ++ DL DG+ S+
Sbjct: 3 KLISWNVNGLRACVK-----KGFLDFFKESDADIFCIQETKLQEGQIDLDL---DGFNSY 54
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ + GYSG A F + + P S V + + EE
Sbjct: 55 WNYAE-----KKGYSGTAVFTK-EEPLS---VKIGIGIEEH------------------- 86
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQKR 171
D+EGR + + F L NVY P + + R+ +++ Q+ L+K+
Sbjct: 87 --------DNEGRVLTLEFNDFYLVNVYTPNS-KQGLERLDYRMVWEDVFRQYLKELEKK 137
Query: 172 WEFLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSF 224
+LC GDLN+A ID R +AG + E +I + L++SG F
Sbjct: 138 KPVILC--------GDLNVAHKEIDLKNPKVNRKNAGFTDEERE-KI---TQLLDSG--F 183
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
D +R +P++ AY+ W A N G RID+ L + + D + H
Sbjct: 184 IDTYRFFYPDKEGAYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIH 235
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 128/277 (46%), Gaps = 70/277 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F +ADI C QETKL+ +++ DL +GY
Sbjct: 1 MKLISWNVNGLRAAVQ-----KGFLDYFKNENADIFCIQETKLQEGQIELDL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P EV+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-KKP---IEVSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWE 173
D EGR + ++ F + VY P + E+ R+ +++ +F + + K
Sbjct: 86 ---------DKEGRVITLEYEDFYMITVYTPNS-QEELARLDYRMSWEDEFRNYVMK--- 132
Query: 174 FLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFD 226
L + + + + GDLN+A ID R +AG F+ E R F +L E+G F D
Sbjct: 133 --LDKLKPVIICGDLNVAHKEIDLKNPKSNRKNAG--FSDEE-RAKFTELL-ENG--FID 184
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
FR +PE AY+ W A + N G RID+ + +
Sbjct: 185 SFRHFYPEVTGAYSWWSYRFNARKNNAGWRIDYFVVS 221
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 125/281 (44%), Gaps = 65/281 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNGLR + + DAD C QETK++ +L + DGY+S+++
Sbjct: 2 LKLISWNVNGLRACYDK--GFTDIFRQLDADFFCLQETKMQAGQLD---LQFDGYQSYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R++ P++ G M+ E
Sbjct: 57 YAE-----KKGYSGTAVFTRLQ----------PISVSYG------------MDRTEH--- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLL 176
D EGR + + F L NVY P + E R+++++ F H L++ L
Sbjct: 87 ------DREGRIITLEMEDFFLVNVYTPNS-QEGLKRLEYRMTWEDDFLHFLKQ-----L 134
Query: 177 CQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + V GDLN+A ID R +AG +E R F +L F D FR
Sbjct: 135 KTQKPVIVCGDLNVAHQEIDLKNPKTNRKNAG---FTDEERYKFTQLL---SAGFTDTFR 188
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+P +++ Y+ W A + N G RID+ L A L++K
Sbjct: 189 YFYPNQKDIYSWWSYRFKAREKNAGWRIDYFL-ASASLNEK 228
>gi|82703533|ref|YP_413099.1| exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
gi|82411598|gb|ABB75707.1| Exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
Length = 277
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 123/275 (44%), Gaps = 56/275 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVN L+ R+ Q + + L D++C QETKL+ + + A GY++ +S
Sbjct: 1 MKIATWNVNSLKVRLPQ---VLEWLTLNQPDVLCLQETKLQDEHFPVSEIAAAGYQTIYS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R P S E FTG M G ED K
Sbjct: 58 -------GQKTYNGVALLSR--QPVS-----------EVFTG---------MPGFEDPQK 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
LL + CV+ +Y P + + + Q+KL++ L++ +L + R
Sbjct: 89 -RLLGGVHDDVCVVC---------IYVPNGEHVTSEKYQYKLRWLAALREWLREMLSRHR 138
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS-KHPER 235
++ V+GD NIAP D D+ K F R FR +L F D FR PE+
Sbjct: 139 KLVVLGDFNIAPEDCDVHDSKLWEGKVLFSELERAAFREVL---DLGFIDSFRLFDQPEK 195
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHIL----CAGPC 266
++T W A + N G RIDHIL AG C
Sbjct: 196 --SFTWWDYRMMAFRRNMGLRIDHILLSRELAGMC 228
>gi|392966891|ref|ZP_10332310.1| exodeoxyribonuclease III Xth [Fibrisoma limi BUZ 3]
gi|387845955|emb|CCH54356.1| exodeoxyribonuclease III Xth [Fibrisoma limi BUZ 3]
Length = 258
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 111/270 (41%), Gaps = 59/270 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++++YN+NG+R + L L + DI+CFQE K + + + GY +
Sbjct: 1 MQLISYNINGIRAALRN--GLADWLTQHNFDILCFQEVKATADVVDLSIFESLGYRYHWH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF R+ +P
Sbjct: 59 AAE-----KKGYSGVATFSRIAPDNVILGCGIPA-------------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLC 177
D EGR + TD G L N Y P + + V+++F F++ +Q+ L
Sbjct: 88 -----YDCEGRILRTDFGDLTLLNCYFPSGTTGEVRQGVKMEFLDDFYNYVQR-----LR 137
Query: 178 QGR-RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRS 230
Q R ++ VVGD NIA AID D P KN E R W G D FR
Sbjct: 138 QERPKLIVVGDYNIAHNAIDIHD--PIRNKNTTGFLPEERAWMNKWF---GSGMTDAFRY 192
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
KHP+ AY+ W GA N G RID++
Sbjct: 193 KHPD-EVAYSWWSYRAGARTNNKGWRIDYV 221
>gi|448115080|ref|XP_004202743.1| Piso0_001598 [Millerozyma farinosa CBS 7064]
gi|359383611|emb|CCE79527.1| Piso0_001598 [Millerozyma farinosa CBS 7064]
Length = 467
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 130/334 (38%), Gaps = 73/334 (21%)
Query: 1 MKIVTYNVNGLRQRV-----SQFGS-LRKLLDSFDADIICFQETKLRRQELKS-DLVMAD 53
++ V++NVNG++ + F S D ADII QE KL LK +V
Sbjct: 25 IRFVSFNVNGVKTLFNYHPWTSFSSQFDPAFDFLKADIISLQELKLSSTTLKDLKIVSLK 84
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRV---KSPFSSTEVALPVAAEEGFTGLLET--SG 108
Y+SF S R + GYSGV F R+ K + V AEEG +G L++
Sbjct: 85 NYKSFISLPRI----KKGYSGVGLFVRIPNDKEDLTVKSSLRVVKAEEGVSGFLKSPEDP 140
Query: 109 SKIMEGLEDFSKDEL-----------LKIDSEGRCV-ITDHGHFILFNVYGPRADSEDTV 156
SK L + D + +++D EGRC+ I ++F+VY P S+ +
Sbjct: 141 SKCYRDLPE--NDSIGGYPLIDNTLGVELDKEGRCICIELASKLVVFSVYCPANSSQTEI 198
Query: 157 RIQFKLQFFHVLQKR-WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------ 209
+++ F L +R + + + V+ D+N+ ID D KN
Sbjct: 199 GETYRMNFLRALLERCYNLKYVLNKEVVVLSDINVCVDLIDHADELNTRVKNNLVTNPIL 258
Query: 210 ---------------------------RIWFRSMLVESG---------GSFFDVFRSKHP 233
R S +V+S FD R K
Sbjct: 259 LGSPNSGNLFERANIEECIKFKSSTPARKLLNSYVVQSENFKDLSTDRNFLFDSTRIKQE 318
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
R +T W + T A Q NYG+RID IL + +
Sbjct: 319 RRMNMFTVWNTLTNARQSNYGSRIDLILASSEIM 352
>gi|366990495|ref|XP_003675015.1| hypothetical protein NCAS_0B05590 [Naumovozyma castellii CBS 4309]
gi|342300879|emb|CCC68643.1| hypothetical protein NCAS_0B05590 [Naumovozyma castellii CBS 4309]
Length = 539
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 149/387 (38%), Gaps = 106/387 (27%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++++T+NVNG+R Q S SL K + ADII FQE K+ + + + D
Sbjct: 14 VRLLTFNVNGIRTFFHYQPFSTMNQSLIKAFNYLQADIITFQELKIEKATVPKWVPSPDE 73
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---------- 104
+ +F S + GY+GV + R + VAAEEG TG L
Sbjct: 74 FLTFISIPVK----KKGYAGVGCWIR---KYDEGHPLFVVAAEEGITGYLSLKLDGKNSV 126
Query: 105 ------------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRAD 151
+T G +G+E SKDE L +DS+GRCV+ + ++ VY P
Sbjct: 127 KTYREMDQLNLGQTVGG--YDGIE-MSKDEALDLDSQGRCVMIELKCQIVVICVYCPANS 183
Query: 152 SEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------- 200
F+++F VL KR L G+ ++GD+N+ ID ++
Sbjct: 184 GLSEEGELFRMKFLKVLFKRIRNLYAMGKNPILMGDVNVCRDLIDSAESLEVLRIPVTNN 243
Query: 201 --GPDFAKN------EF--------RIWFRSMLVES-------GGSFFDVFRSKHPERR- 236
G KN EF R +L +S G D R +R
Sbjct: 244 TDGIQLEKNYCLNCQEFVMNPATPHRRLLNQLLKDSIVPDLAKDGILVDSTRWLQTRKRV 303
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+ YT W + NYG+R+D IL + + E DIL D
Sbjct: 304 KMYTVWNTLKNYRPVNYGSRVDFILTSDKLIPS-------------FKESDILAD----- 345
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ GSDH PVY+ L
Sbjct: 346 --------------VMGSDHCPVYLDL 358
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLCK H E + + + G+RF+VC R +G N E++CG+F+W
Sbjct: 493 PLCK-HGEDAILKTSRTSTHP-GKRFWVCNRPQGDTGNTESSCGFFQWV 539
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 127/297 (42%), Gaps = 55/297 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNG+R V + LD F DAD+ C QETKL+ ++ +L Y +
Sbjct: 1 MKLVSWNVNGIRACVG-----KGFLDYFYQIDADVFCIQETKLQEGQISLELKDHSQYWN 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+ + GYSG A F + K P++ + G G E
Sbjct: 56 Y--------AVKKGYSGTAIFSKKK----------PLSVQYGI-GTTEH----------- 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
DSEGR + + F L N+Y P + D R+ +++ + L+ EFL
Sbjct: 86 ---------DSEGRAITLEFEEFYLVNIYTPNS-QRDLARLNYRVAWEDYLR---EFLQE 132
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPE 234
L + + + GD+N+A ID + + + F R + E F D FR +PE
Sbjct: 133 LDTKKPVILCGDMNVAHHEIDLKNPKSNMKNSGFTPEERGKMTELLNNGFVDTFRHLNPE 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
+ YT W + N G RID+ L + D Q H+ + + C +L++
Sbjct: 193 KENVYTWWSYMNKVRERNIGWRIDYFLVSERLRESIIDTQVHSDIMGS-DHCPVLLE 248
>gi|390939744|ref|YP_006403481.1| exodeoxyribonuclease III [Sulfurospirillum barnesii SES-3]
gi|390192851|gb|AFL67906.1| exodeoxyribonuclease III [Sulfurospirillum barnesii SES-3]
Length = 254
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 115/267 (43%), Gaps = 47/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R ++ G +D D++C QE K ++ L + F+
Sbjct: 1 MKLISWNVNGIRAVANKNGF--SWVDEIKPDVLCLQEIKAEAPQIPEPL-----FTHPFT 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + + GYSG +F F +T+ A + D +K
Sbjct: 54 CKHINSASKKGYSGTMSFS--TQTFDTTDTAWHI----------------------DHTK 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
EGR + G LFNVY P + R+ K++F+ E L +G+
Sbjct: 90 --------EGRILEHHFGDVALFNVYFPNGQQSEE-RLSHKMKFYSDFLAHTEALRQKGK 140
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD+N A ID + + + F R W ++L E G + D FR H + +
Sbjct: 141 GIIICGDVNTAHREIDLANPKANENTSGFLPIERAWMDTLL-EKG--YLDTFREVHGDVK 197
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
+AY+ W +GA + N G RID+ +
Sbjct: 198 DAYSWWSYRSGARERNVGWRIDYFFIS 224
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 57/298 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L + DI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETNPDIFCVQETKLQEGQ-----ILMENMEEYTQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F + K P++ G LE +G
Sbjct: 54 YWNYAEK--KGYSGTAIFTKFK----------PLSVHYG----LEENG------------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ EGR + + F L NVY P R S R++++ +F + LQ+ L
Sbjct: 86 ------EPEGRTITLEFERFYLVNVYTPNTKRDLSRLPYRLEWEDRFRNYLQQ-----LD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERR 236
+ + V GDLN+A ID +A ++ F R + + G F D FR +P+R
Sbjct: 135 ASKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRT 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 291
+ Y+ W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 195 DVYSWWSYMPKVRERNIGWRIDYFLVSD----RLRPLLIDASIDCHITGSDHCPVILD 248
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 137/329 (41%), Gaps = 90/329 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R V + + DADI C QETK++ +L +L +GY +++
Sbjct: 1 MKFISWNVNGIRACVQK--GFLEFFSQADADIFCIQETKMQEGQLSLEL---EGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ P S V + EE
Sbjct: 56 YAV-----KKGYSGTAVFSKIE-PLS---VVYGIGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ F VY P A +E R+ +++++ + W L + +
Sbjct: 86 ------DQEGRVITLEYEDFYFVTVYTPNAQNE-LARLDYRMKWEDDF-RAWLKKLEENK 137
Query: 181 RIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ V GD+N+A ID R AG D + +F + L+++G F D FR +
Sbjct: 138 PVVVTGDMNVAHKEIDLKNPKTNRKSAGFSDEERQKF-----TELLDAG--FIDTFRYFY 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 292
P++ Y+ W A + N G RID+ C CL D L+D
Sbjct: 191 PDQEGIYSWWSYRFRAREKNAGWRIDY-FCVSECLK------------------DRLVD- 230
Query: 293 KRWKPGNAPRWKGGMSTRLEGSDHAPVYM 321
G+ T + GSDH PV +
Sbjct: 231 ------------AGILTDIMGSDHCPVVL 247
>gi|302761410|ref|XP_002964127.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii]
gi|300167856|gb|EFJ34460.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii]
Length = 388
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 244 SNTGAEQFNYGTRIDHILCAGPCLHQ------KHDLQS-HNFVTCHVNECDILIDYKRWK 296
S +GAE+FNYG+RIDH+ AGPC HD S F C + CDIL+ +KR K
Sbjct: 101 SASGAEEFNYGSRIDHVRIAGPCAGHCQCPDGSHDNSSCDGFAECGTDMCDILLKFKRAK 160
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTP-SLASRYLPIIRGVQQTLVSV 355
PRW GG S +L+GS HAPV + L +P + H+ P L + + + + ++
Sbjct: 161 LDTLPRWSGGRSLKLDGSVHAPVILQLKHLPSMKLHNWPLDLCLSFAVVSKVLLISIFRK 220
Query: 356 LMKREVAKQGKSCKFSGSLPAESNSTG 382
L +R A + S PA + TG
Sbjct: 221 LNERATANTEPDTSRNVSKPAFTQETG 247
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 564 RRIQQLMETS---IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 607
R QQ +E S +PLCKGH EPCV R VKK GP GR F+VC RA+
Sbjct: 325 RSSQQSLEKSAADLPLCKGHSEPCVVRTVKKAGPKLGRGFYVCDRAK 371
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 115/277 (41%), Gaps = 57/277 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R V + LD F DADI C QE+K++ +LK +L +GY
Sbjct: 1 MKFISWNVNGIRACVQ-----KGFLDFFKEADADIFCIQESKMQEGQLKLEL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ R GYSG A F + + P S VA + EE
Sbjct: 53 FWNYAE-----RKGYSGTAIFTK-QEPLS---VAYGIGMEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEF 174
D EGR + + F VY P + +E R+Q++ +F L+K
Sbjct: 86 ---------DKEGRVITLEFEEFYFVTVYTPNSQNELARLDYRMQWETEFLKYLKK---- 132
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHP 233
L + + GDLN+A ID + + F R E F D FR +P
Sbjct: 133 -LEAKKPVIFCGDLNVAHREIDLKNPKTNQKNAGFTDEERGKFTELLSAGFIDTFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
E+ Y+ W A N G RID+ C CL +
Sbjct: 192 EQEGIYSWWSYRFSARAKNAGWRIDY-FCVSECLKDR 227
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 135/297 (45%), Gaps = 56/297 (18%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR + F +L +L + DI+C QETKL+ +E+K L+ DGY
Sbjct: 267 VKVMTWNVNGLRGLLKFESFSAL-QLAQRENFDILCLQETKLQVKDVEEIKKTLI--DGY 323
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
+ SF+SC+ + + GYSG A R+K P++ G TGL SG
Sbjct: 324 DHSFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGL---SGH----- 360
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
D+EGR V + F L N Y P + + R+ ++++ +
Sbjct: 361 ------------DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIK 407
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW----FRSMLVESGGSFFDVFRS 230
L + + + + GDLN A ID + + F I F + L++ G F D FR
Sbjct: 408 ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRK 465
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
+HP YT W G + N G R+D+ L + HD +++ +N D
Sbjct: 466 QHPGVV-GYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHD----SYILPDINGSD 517
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR ++ ++ +FDAD C QE KL+ ++ D+ DGY S+++
Sbjct: 1 MKFVSWNVNGLR--AAREKGFDEIFKNFDADFFCLQEIKLQEGQIDMDM---DGYYSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSG A F R++ P+ F GL K
Sbjct: 56 YAK-----RKGYSGTAIFTRIE----------PIDV---FYGL---------------GK 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
+E D EGR + ++ F + VY P + E +R+ ++ ++ + EF L
Sbjct: 83 EEH---DDEGRLITLEYPEFYVSTVYTPNSKQE-LLRLDYRQEWEDEFR---EFFKNLDA 135
Query: 179 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + + GD+N+A ID + P F E + ++L+++G F D FR +P
Sbjct: 136 KKPVIICGDMNVAHKEIDLKNPKTNRKNPGFTDEEREKF--TLLLDAG--FTDTFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
++ Y+ W A + N G RID+ L +
Sbjct: 192 DKENEYSWWSYRFNARKNNTGWRIDYFLVS 221
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 53/296 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 454 LKICSWNVAGLRAWLKKDG--LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWL 511
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C GY+GVA + ++ +P+ E G G E+F
Sbjct: 512 CMPG------GYAGVAIYSKI----------MPIHVEYGI-------------GNEEF-- 540
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL---QFFHVLQKRWEFLLC 177
D GR + ++ F L NVY P + V ++ ++ + F K+ + L
Sbjct: 541 ------DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDAL-- 591
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERR 236
+ + + GD+N++ ID + + F R + E G F D FR +P+R+
Sbjct: 592 --KPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRK 649
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 290
AYT W A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 650 GAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 702
>gi|114775670|ref|ZP_01451238.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
gi|114553781|gb|EAU56162.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
Length = 263
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 122/272 (44%), Gaps = 53/272 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T N+NG+R + + + DADI+C QE K +L + ++ D + +
Sbjct: 1 MKIITANLNGIRSATRK--GFWEWFAAQDADILCLQELKAHIHQLPPESLLKDYHRHYHF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + R K P + V L GS ++ D+S
Sbjct: 59 AQ------KPGYSGVALYSR-KQP-DTVHVGL---------------GS--IDPATDWS- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADS---EDTVRIQFKLQFFHVLQKRWEFLLC 177
+ D+EGR V+TD G + + Y P ++ F QF ++ + L
Sbjct: 93 ----RFDAEGRFVMTDFGTLSVISAYFPSGSGTPERQAGKMVFLEQFLPLITR----LKD 144
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
QGR + + GD+NIA ID R ++G F E R WF L F D+FR
Sbjct: 145 QGRELIICGDINIAHRNIDLKNWRGNRKNSG--FLPEE-RAWFDQCL---NAGFVDLFRQ 198
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILC 262
+PE RE Y+ W + A N G RID+ LC
Sbjct: 199 LYPE-REQYSWWSNRGQARANNVGWRIDYHLC 229
>gi|402695428|gb|AFQ90560.1| APN2, partial [Hymenoscyphus pseudoalbidus]
gi|402695431|gb|AFQ90562.1| APN2, partial [Hymenoscyphus pseudoalbidus]
Length = 511
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 96/246 (39%), Gaps = 56/246 (22%)
Query: 105 ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
+ G L +FS D +DSEGRCVI + +L VY P + D R +F++ F
Sbjct: 14 QVGGYPTAAQLSNFSLDAA-ALDSEGRCVILEFPALVLIGVYCPA--NRDESREEFRIGF 70
Query: 165 FHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFR 214
+ L R L+ G+R+F+ GDLNI +D G ++
Sbjct: 71 LNALDARVRNLVAMGKRVFLTGDLNIIREKMDTAYGEEQLKKHGMTGEEYLSTPAMRMLN 130
Query: 215 SMLV-----------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+LV E +D+ R+ HP R +TCW + A N+G+RID++LC+
Sbjct: 131 QLLVGGRVIGQKDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRIDYVLCS 190
Query: 264 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
C + D + L GSDH PVY
Sbjct: 191 LDCYNWFRD--------------------------------SNIQEGLMGSDHCPVYAVF 218
Query: 324 GEVPEI 329
E EI
Sbjct: 219 KEKVEI 224
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 618
W +I L + PLC+ H EPC++ + KK G GR F++CA+ GP+ E N CG
Sbjct: 442 WSKI--LGKRQPPLCE-HGEPCISYLTKKAGLNCGRSFYMCAKPLGPSGQKEKNTEWRCG 498
Query: 619 YFKWA 623
F W+
Sbjct: 499 TFIWS 503
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ ++ +AD+ C QE+K++R++ D YE +++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFETVNADVFCIQESKMQREQATFDF---PNYEEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA F + K L VA + G
Sbjct: 56 SAE-----KKGYSGVAIFSKTK--------PLSVAYDMG--------------------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
+ D EGR + ++ F L NVY P + E R+ +++++ F K E
Sbjct: 82 --IAHHDKEGRIICAEYKDFYLVNVYTPNSKRE-LERLSYRMEWEDDFRAYLKNLE---- 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + V GDLN+A ID R +AG F E + L++SG F D FR
Sbjct: 135 KTKPVIVCGDLNVAHQEIDLKNPKTNRRNAG--FTDEEREK--MTQLLDSG--FTDTFRH 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P AY+ W A + N G RID+ LC+
Sbjct: 189 FYPTLEGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 135/297 (45%), Gaps = 56/297 (18%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR + F +L +L + DI+C QETKL+ +E+K L+ DGY
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSAL-QLAQRENFDILCLQETKLQVKDVEEIKKTLI--DGY 332
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
+ SF+SC+ + + GYSG A R+K P++ G TGL SG
Sbjct: 333 DHSFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGL---SGH----- 369
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
D+EGR V + F L N Y P + + R+ ++++ +
Sbjct: 370 ------------DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIK 416
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW----FRSMLVESGGSFFDVFRS 230
L + + + + GDLN A ID + + F I F + L++ G F D FR
Sbjct: 417 ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRK 474
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
+HP YT W G + N G R+D+ L + HD +++ +N D
Sbjct: 475 QHPGVV-GYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHD----SYILPDINGSD 526
>gi|325281386|ref|YP_004253928.1| exodeoxyribonuclease III Xth [Odoribacter splanchnicus DSM 20712]
gi|324313195|gb|ADY33748.1| exodeoxyribonuclease III Xth [Odoribacter splanchnicus DSM 20712]
Length = 257
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 126/300 (42%), Gaps = 53/300 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+TYNVNGLR +S+ L DI+C QETK + ++ + A GY SFF
Sbjct: 2 IKIITYNVNGLRSALSK--GFTDWLAEELPDIVCLQETKAQPDQIPTLEFEALGYRSFFF 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA R+ P E G G++++
Sbjct: 60 SAE-----KKGYSGVAILTRIT----------PDHLEYGM-------------GMQEY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + D+G + +VY P + + R FK+++ + L +
Sbjct: 90 ------DREGRFLRADYGDLSIVSVYHPSGTTGEE-RQAFKMKWLEDFRHYVMKLSKTRK 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD NI ID D + + F R W S+ +ESG F D FR HPE
Sbjct: 143 KLILCGDYNICHRPIDIHDPVRNANSSGFLPEEREWM-SLFLESG--FTDTFRYFHPEEP 199
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAG---PCLHQKHDLQSHNFVTCHVNECDILIDYK 293
YT W A N G RID+ + + P L + L H + C +++ K
Sbjct: 200 HQYTWWSFRANARNNNKGWRIDYCMVSPEVIPLLKDAYILPQ----VKHSDHCPAVVELK 255
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++V++NVNGLR + + + L ADI C QETK+ Q ++D V + Y +F++
Sbjct: 1 MRLVSWNVNGLRACMQK--GFKDFLLKSGADIFCVQETKM--QPDQADFVF-ENYHAFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGV T + + P+ G GLE+
Sbjct: 56 SAQ-----KKGYSGVLTLSK----------SAPLDVRYGL-------------GLEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + ++ +F L NVY P + +R+ ++LQ+ V + EFL L
Sbjct: 86 ------DTEGRVITCEYEYFYLVNVYTPNS-QRGLLRLPYRLQWESVFR---EFLQNLAS 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + GDLN+A ID R +AG D +N F L++ G D +R
Sbjct: 136 HKEVLICGDLNVAHTEIDLTNPQSNRYNAGFSDPERNAF-----GQLLQLG--LIDTYRH 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P++ E YT W + N G RID+ L +
Sbjct: 189 FYPDKTEVYTWWSYMNQSRARNIGWRIDYFLAS 221
>gi|297569473|ref|YP_003690817.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
gi|296925388|gb|ADH86198.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
Length = 490
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 129/329 (39%), Gaps = 81/329 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+++ ++NVNGLR + +L DAD++ QE K +L ++ GY++F+
Sbjct: 238 LRLASWNVNGLRAIAKK--GFAELAGELDADLLAIQEIKAHPDQLPAEARALPGYQAFWL 295
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVA + R++ K++ G+ +
Sbjct: 296 PAK-----RKGYSGVAIYSRLEP-------------------------LKVLYGM---GQ 322
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+E K + EGR + + F L N Y P A E R+ FKL F Q+ E L Q +
Sbjct: 323 EE--KYEQEGRVLTMEFADFFLVNAYLPNAQPE-LARLPFKLDFCRHFQQFCENLATQ-K 378
Query: 181 RIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ V GDLN+A ID P F+ E R W L F D FR + E
Sbjct: 379 NVVVCGDLNVAHREIDLARPQENQQSPGFSPAE-RAWLDGFL---ANGFTDTFRLFNQEG 434
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
YT W GA Q N G RID+ C+ +
Sbjct: 435 GN-YTWWSYRGGARQRNVGWRIDYF-----CIDSAGRRRVR------------------- 469
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYMCLG 324
+ G+ + GSDH PV + LG
Sbjct: 470 --------EAGIRPEIMGSDHCPVTLTLG 490
>gi|30250127|ref|NP_842197.1| exodeoxyribonuclease III:exodeoxyribonuclease III xth [Nitrosomonas
europaea ATCC 19718]
gi|30139234|emb|CAD86104.1| Exodeoxyribonuclease III:Exodeoxyribonuclease III xth [Nitrosomonas
europaea ATCC 19718]
Length = 257
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 114/266 (42%), Gaps = 52/266 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T NVNGLR + L L +AD+IC QE K ++ ++ + DGY +F
Sbjct: 1 MRIITLNVNGLRSAAGK--GLFDWLPRQEADVICVQELKAQQGDINGVMRAPDGYSGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV + R S +I+EG
Sbjct: 59 CAE-----KKGYSGVGLYTRY-------------------------SPDQIIEG------ 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLC 177
+ +ID EGR + D G+ + ++Y P S + + F F +LQ E C
Sbjct: 83 TGIPEIDMEGRFLRVDFGNLTVISIYLPSGSSGEHRQAAKFFFMEHFLPLLQSLAE---C 139
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
GR + + GD NIA AID + + + F R W ++ E DVFR +P
Sbjct: 140 -GREVLLCGDWNIAHKAIDLKNWRSNQKNSGFLPEERAWLSTVFDEL--KLVDVFRKINP 196
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDH 259
E + YT W + A N G RID+
Sbjct: 197 E-PDQYTWWSNRGQAWAKNVGWRIDY 221
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 57/275 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ T+NVNG+R +++ G+L++ + + DI+C QETK ++ +++ + ++ YE FF+
Sbjct: 1 MKLATWNVNGIRSVLNK-GALQEYVLESNPDILCLQETKAQQDQVELGMEFSE-YEVFFN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ E G G+E+
Sbjct: 59 SAV-----KKGYSGTAIFTKEK----------PLSVEYGI-------------GIEEH-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLL 176
D EGR + ++ F L VY P A D R++++ F ++K L
Sbjct: 89 ------DQEGRVITAEYEKFYLVTVYTPNA-KRDLSRLEYRQVWEDDFLAFIKK-----L 136
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID + + F K E R F ++ D FR
Sbjct: 137 EETKPVIFCGDLNVAHKEIDLANPKTNTMNAGFTKEE-RAKFDQVV---NNDLVDAFRYL 192
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
+P+ AY+ W GA N G RID+ + + P
Sbjct: 193 YPDTLGAYSWWSYMGGARARNVGWRIDYFVISQPL 227
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 128/285 (44%), Gaps = 60/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + GF G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGF-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDK 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+ +AY+ W A N G RID+ + + + D + H
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 133/321 (41%), Gaps = 80/321 (24%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V + + DADI C QETKL+ ++ +L +GY +++
Sbjct: 5 KLISWNVNGLRACVKK--GFLDYFNEMDADIFCVQETKLQEGQIDLEL---EGYYDYWNY 59
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F + K P++ + G G+E+
Sbjct: 60 AE-----KKGYSGTAVFTKEK----------PISVKMGL-------------GIEEH--- 88
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQG 179
D+EGR + ++ F L NVY P + + R+++++ + V + +L L +
Sbjct: 89 -----DNEGRVITLEYDKFFLVNVYTPNS-QQKLARLEYRMSWEDVFRN---YLKDLEKN 139
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREA 238
+ + + GDLN+A ID + + F RS + E S F D FR +P+
Sbjct: 140 KPVILCGDLNVAHKEIDLKNPSSNRKNAGFSDEERSKMSELLNSGFTDTFRYFYPDIEGV 199
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 298
Y+ W A N G RID+ + + + D + H
Sbjct: 200 YSWWSYRFNARANNAGWRIDYFIVSQSLNDKLEDAKIH---------------------- 237
Query: 299 NAPRWKGGMSTRLEGSDHAPV 319
T +EGSDH PV
Sbjct: 238 ----------TSIEGSDHCPV 248
>gi|402536547|gb|AFQ62784.1| APN2, partial [Hymenoscyphus albidus]
gi|402536555|gb|AFQ62789.1| APN2, partial [Hymenoscyphus albidus]
Length = 488
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 96/236 (40%), Gaps = 56/236 (23%)
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
L +FS D +DSEGRCVI + +L VY P + D R +F++ F L R
Sbjct: 1 LSNFSLDAA-ALDSEGRCVILEFPALVLIGVYCPA--NRDESREEFRIGFLDALDARVRN 57
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLV------ 218
L+ G+R+F+ GDLNI +D G ++ +LV
Sbjct: 58 LVAMGKRVFLTGDLNIIREKMDTAYGDEQLKKHGMTGEEYLSTPAMRMLNQLLVGGRVIG 117
Query: 219 -----ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 273
E +D+ R+ HP R +TCW + A N+G+RID++LC+ C +
Sbjct: 118 QKDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRIDYVLCSLDCYNW---- 173
Query: 274 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 329
F ++ E L GSDH PVY L E EI
Sbjct: 174 ----FRESNIQEG------------------------LMGSDHCPVYAILKEKVEI 201
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 563 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 618
W +I L + PLC+ H EPC++ + KK G GR F++CA+ GP+ E N CG
Sbjct: 419 WSKI--LGKRQPPLCE-HGEPCISYLTKKAGLNCGRSFYMCAKPLGPSGQKEKNTEWRCG 475
Query: 619 YFKWA 623
F W+
Sbjct: 476 TFIWS 480
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 53/296 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 427 LKICSWNVAGLRAWLKKDG--LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWL 484
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C GY+GVA + ++ +P+ E G G E+F
Sbjct: 485 CMPG------GYAGVAIYSKI----------MPIHVEYGI-------------GNEEF-- 513
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL---QFFHVLQKRWEFLLC 177
D GR + ++ F L NVY P + V ++ ++ + F K+ + L
Sbjct: 514 ------DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDAL-- 564
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERR 236
+ + + GD+N++ ID + + F R + E G F D FR +P+R+
Sbjct: 565 --KPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRK 622
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 290
AYT W A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 623 GAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 675
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 134/334 (40%), Gaps = 96/334 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
M++VT+NVNGLR + + LD F DAD++C QETKL+ ++ +L GY
Sbjct: 1 MRLVTWNVNGLRACLG-----KGFLDFFQRVDADVVCLQETKLQPDQIALEL---PGYRL 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F RV+ P S T G+ GL+
Sbjct: 53 FWNSAE-----KKGYSGTAVFTRVE-PLSVT------------CGI----------GLD- 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQK 170
D EGR + + F L Y P A +E RI +++Q + L K
Sbjct: 84 -------AHDHEGRVITAEFDGFFLVCCYTPNAQNE-LARIDYRMQWEDDFRAYLMELDK 135
Query: 171 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFR 229
+ +LC GDLN+A ID + + F R + E S F D FR
Sbjct: 136 KKPVVLC--------GDLNVAHEEIDLKNPKSNRGSAGFSDQERGKMTELLSSGFTDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 289
+ +P+R AYT W A + N G RID+ + + L + D H
Sbjct: 188 ALYPDRTGAYTWWSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIH------------- 234
Query: 290 IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+EGSDH PV + L
Sbjct: 235 -------------------AEVEGSDHCPVELVL 249
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 136/297 (45%), Gaps = 54/297 (18%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR ++ F +L +L + DI+C QETKL+ +E+K+ L+ DGY
Sbjct: 288 VKVMTWNVNGLRALLKLESFSAL-QLAQRENFDILCLQETKLQVKDVEEIKNTLI--DGY 344
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
+ SF+SC+ + + GYSG A R+K P++ G TGL SGS
Sbjct: 345 DHSFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGL---SGSDH--- 383
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
D EGR V + F L N Y P + + R+ ++++ +
Sbjct: 384 ------------DMEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIK 430
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW----FRSMLVESGGSFFDVFRS 230
L + + + + GDLN A ID + + F I F + ++ G F D FR
Sbjct: 431 ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRNAGFTIEERQSFGANFLDKG--FVDTFRK 488
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
+HP YT W G + N G R+D+ L + HD +++ +N D
Sbjct: 489 QHPGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSESIAANVHD----SYILPDINGSD 540
>gi|451979745|ref|ZP_21928157.1| Exodeoxyribonuclease [Nitrospina gracilis 3/211]
gi|451763024|emb|CCQ89356.1| Exodeoxyribonuclease [Nitrospina gracilis 3/211]
Length = 254
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 119/273 (43%), Gaps = 50/273 (18%)
Query: 1 MKIVTYNVNGLRQRVSQ-FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
M I ++NVNG+R + FG ++S D D++C QETK +++ ++ +GYE+++
Sbjct: 1 MLIYSWNVNGIRAVAKKGFGDW---MESVDPDVVCLQETKAHPEQVPPEVAYPEGYEAYW 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
C T R GYSGVA F + K P G G+E F
Sbjct: 58 -CPAT----RKGYSGVAVFSKTK----------PKQVHYGM-------------GIERF- 88
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-CQ 178
DSEGR + + F L N+Y P S D R+QFK++++ E L Q
Sbjct: 89 -------DSEGRYLRLEFTKFDLLNIYFPNGTSGDE-RLQFKMEYYDAFLDHCETLRKKQ 140
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 234
+++ + GD+N A ID +A + + F R W + + D FR + +
Sbjct: 141 KKKLVICGDVNTAHREIDLKNAKQNEKNSGFLPMEREWIDKFIAH---GYVDTFR-EFCQ 196
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
+ YT W A N G RID+ L
Sbjct: 197 EPDNYTWWTYRANARARNIGWRIDYFFVTRDLL 229
>gi|410026254|gb|AFV52282.1| DNA lyase-like protein, partial [Pseudocercospora fijiensis]
Length = 233
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 58/249 (23%)
Query: 34 CFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP 93
+E K++R++L+ D+V+ DG++ +FS K + GYSGV + R P
Sbjct: 1 AMEELKIQRKDLRDDMVLVDGWDCYFSLP----KHKKGYSGVGIYTR-------NATCAP 49
Query: 94 VAAEEGFTGLLETSG------------------SKIMEGLEDFSKDELLKIDSEGRCVIT 135
+ AEEG G+L ++ S M + + ++ +D+EGRCV+
Sbjct: 50 IRAEEGVLGVLPSANGTPYRDLPDEDSIGGYLTSVQMADIAEIGGEDPAGLDAEGRCVVV 109
Query: 136 DHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAI 195
+ F+LF VY P + + +R F+ F L R L+ G+ + +VGDLN+ I
Sbjct: 110 EFPAFVLFGVYSPA--NSNGLRDGFRHGFVCALDHRIRNLIKAGKNVILVGDLNVTRHEI 167
Query: 196 DRCDAGP-------------DFAKNEFRIWFRSMLVES-----------GGSFFDVFRSK 231
D+GP +F R F L++ G F+D R
Sbjct: 168 ---DSGPTLEEMRKGLITHEEFISGPNRRIFNQQLIDGEVVGERDEGREKGVFWDTTRIF 224
Query: 232 HPERREAYT 240
HP+R+ YT
Sbjct: 225 HPDRKGMYT 233
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 53/296 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 427 LKICSWNVAGLRAWLKKDG--LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWL 484
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C GY+GVA + ++ +P+ E G G E+F
Sbjct: 485 CMPG------GYAGVAIYSKI----------MPIHVEYGI-------------GNEEF-- 513
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL---QFFHVLQKRWEFLLC 177
D GR + ++ F L NVY P + V ++ ++ + F K+ + L
Sbjct: 514 ------DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDAL-- 564
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERR 236
+ + + GD+N++ ID + + F R + E G F D FR +P+R+
Sbjct: 565 --KPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRK 622
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 290
AYT W A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 623 GAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 675
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 119/268 (44%), Gaps = 52/268 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK V++NVNGLR ++ + LD F DADI C QETK++ + + DL GY
Sbjct: 1 MKFVSWNVNGLRACLN-----KGFLDFFREADADIFCLQETKMQEGQAELDL---PGYLQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSS-TEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+++ + GYSG A F + K P S ++ P TG
Sbjct: 53 YWNSAE-----KKGYSGTAVFTK-KEPLSVCYDIRHP-----DHTG-------------- 87
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
EGR + + F L NVY P + E VR+ +++++ + + + L
Sbjct: 88 ------------EGRAITLEFESFYLVNVYTPNSQRE-LVRLPYRMEWENAF-REYVTQL 133
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPER 235
+ + + + GDLN+A ID +A + F R L E S F D FR +P+
Sbjct: 134 DEKKPVIICGDLNVAHQEIDLKNAKSNIGNAGFSYEERGKLTELLASGFLDSFRELYPDL 193
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
AYT W A Q N G RID+ L +
Sbjct: 194 TGAYTWWSYMFKARQNNAGWRIDYFLIS 221
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 123/271 (45%), Gaps = 58/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V + LD F DADI C QETKL+ ++ DL DGY
Sbjct: 1 MKLVSWNVNGLRACVK-----KGFLDYFQEVDADIFCVQETKLQEGQISLDL---DGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F +++ P++ G G E+
Sbjct: 53 YWNYAI-----KKGYSGTAVFTKIE----------PISVRYG-VGTDES----------- 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF-FHVLQKRWEFLL 176
+ EGR + + F L N+Y P + D RI ++L++ +L+ E L
Sbjct: 86 ---------EEEGRILTLEFDDFFLVNIYTPNS-QRDLARIGYRLEWESRILEHLKE--L 133
Query: 177 CQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + + GDLN+A ID + + G +E R S+L F D +R +
Sbjct: 134 DKLKPVILCGDLNVAHQEIDLRNSKSNVGNSGFTDEERGKMTSLL---SAGFVDSYRHFY 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AYT W + N G RID+ + +
Sbjct: 191 PDQEGAYTWWSYMMKVRERNIGWRIDYFIVS 221
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DS DADI C QETKL+ ++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFDSVDADIFCLQETKLQAGQIDLDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ + G G+E+
Sbjct: 57 ------AVKKGYSGTAIFTKKE----------PLSVQYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + + F + VY P + +E R+ +++ F + + L + +
Sbjct: 86 ------DTEGRVITLEFEKFFMVTVYTPNSQAE-LKRLDYRMTFEDAILAYVK-KLDETK 137
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P
Sbjct: 138 PVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTAFL-EAG--FVDSFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ +AY+ W A N G RID+ + +
Sbjct: 192 DLEDAYSWWSYRMNARARNIGWRIDYFVVS 221
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 134/334 (40%), Gaps = 96/334 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
M++VT+NVNGLR + + LD F DAD++C QETKL+ ++ +L GY
Sbjct: 1 MRLVTWNVNGLRACLG-----KGFLDFFQRVDADVVCLQETKLQPDQIALEL---PGYRL 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F RV+ P S T G+ GL+
Sbjct: 53 FWNSAE-----KKGYSGTAVFTRVE-PLSVT------------CGI----------GLD- 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQK 170
D EGR + + F L Y P A +E RI +++Q + L K
Sbjct: 84 -------AHDHEGRVITAEFDGFFLVCCYTPNAQNE-LARIDYRMQWEDDFRAYLMELDK 135
Query: 171 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFR 229
+ +LC GDLN+A ID + + F R + E S F D FR
Sbjct: 136 KKPVVLC--------GDLNVAHEEIDLKNPRSNRGNAGFSDQERGKMTELLSSGFTDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 289
+ +P+R AYT W A + N G RID+ + + L + D H
Sbjct: 188 ALYPDRTGAYTWWSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIH------------- 234
Query: 290 IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+EGSDH PV + L
Sbjct: 235 -------------------AEVEGSDHCPVELVL 249
>gi|148643539|ref|YP_001274052.1| exodeoxyribonuclease, XthA [Methanobrevibacter smithii ATCC 35061]
gi|222444963|ref|ZP_03607478.1| hypothetical protein METSMIALI_00579 [Methanobrevibacter smithii
DSM 2375]
gi|261350463|ref|ZP_05975880.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2374]
gi|148552556|gb|ABQ87684.1| exodeoxyribonuclease, XthA [Methanobrevibacter smithii ATCC 35061]
gi|222434528|gb|EEE41693.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2375]
gi|288861246|gb|EFC93544.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 257
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 116/267 (43%), Gaps = 48/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+V++NVNG+R S+ +S +ADII FQE + + L G+ S+F+
Sbjct: 3 VKLVSWNVNGIRA-ASKKPEFWDWFNSTNADIINFQEVRATEDSIPEKLTDVAGFNSYFN 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGV TF ++K E GL G+E
Sbjct: 62 -----EAEKKGYSGVGTFSKIK-------------PENVVRGL----------GVE---- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+D EGR + ++ F LFN+Y P + + R+ +K+ F + L E L QG+
Sbjct: 90 ----ALDREGRVLRLEYSDFTLFNIYFPNS-GMNAKRLDYKIDFCNALLDLLEDLKNQGQ 144
Query: 181 RIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD+NIA ID C+ + E R W +L F D FR +
Sbjct: 145 NLIITGDVNIAHNPIDVYNPANCEGKSGYLIEE-REWLDDLL---ASGFVDTFR-MFDDS 199
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILC 262
+ +T W T A N G R+D+
Sbjct: 200 GDNFTWWSYRTRARDRNAGWRLDYFFV 226
>gi|398347543|ref|ZP_10532246.1| exodeoxyribonuclease III [Leptospira broomii str. 5399]
Length = 254
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 120/267 (44%), Gaps = 49/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++ N NG+R ++ L LL S D +CFQETK + +L +++ GY+++F
Sbjct: 1 MKLICLNCNGIRSAWTK--GLGDLLSSERPDFVCFQETKAQSDQLSAEIWEKLGYKAYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV+ + + K P ++ + EE
Sbjct: 59 SAE-----KKGYSGVSLWAK-KEP---KKITYGIGVEE---------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR V+ D+G F ++ VY P + DT R K++F K + + +
Sbjct: 88 -----FDREGRSVLADYGDFAIWTVYFPSGTTGDT-RQAAKMRFLDEFLKLSKKIRKKHP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD+NIA D D + AKN E R W L ++G + D FR +PE+
Sbjct: 142 NLILCGDVNIAHTEKDIHDPKGN-AKNSGFLPEERAWLTEFL-KTG--WIDSFRELYPEK 197
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILC 262
+E Y+ W GA N G RID+
Sbjct: 198 QE-YSWWTFRAGARGNNKGWRIDYFFV 223
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 57/274 (20%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLR--RQELKSDLVMADGYESFF 59
K+V++NVNGLR + + D+DI C QETKL+ + EL+ +L +GYE ++
Sbjct: 3 KLVSWNVNGLRACIGK--GFWDFFKEVDSDIFCIQETKLQEGQVELEQEL---EGYEQYW 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+ + GYSG A F ++K PV++ G G+E+
Sbjct: 58 NYAV-----KKGYSGTAIFTKIK----------PVSSSCGI-------------GIEEH- 88
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLL 176
D+EGR + + + L NVY P + E R+++++++ F + K+ L
Sbjct: 89 -------DNEGRVITLEFDQYFLVNVYTPNSKRE-LERLEYRMKWEDDFRIYLKQ----L 136
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHP 233
+ + + + GD+N+A ID + + F + R S L+E G F D +R+ +P
Sbjct: 137 EETKPVIICGDMNVAHKEIDIKNPRSNKRSAGFTMEEREKFSELLEQG--FVDSYRTLYP 194
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
++ AYT W A + N G RID+ C L
Sbjct: 195 DKTGAYTWWSYMFKARERNVGWRIDY-FCVSEVL 227
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 61/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + L ADI+C QETK++ ++ + +GY +++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTCLQETKADILCLQETKVQDGQVS---LQPEGYHDYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +VK P+ G G++D
Sbjct: 57 YAV-----KKGYSGTAVFSKVK----------PLQVSYGL-------------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + + + N Y P A R+Q++ F LQK L
Sbjct: 87 ------DQEGRVITLEFENVFVVNCYTPNAKRGLERIDYRLQWEADFKDYLQK-----LD 135
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
Q + + + GDLN+A ID R +AG F+ E + S+L+ +G F D FR
Sbjct: 136 QKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSDQEREAF--SVLLNAG--FTDSFRY 189
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P++ AY+ W T A + N G R+D+++ +
Sbjct: 190 LYPDQEGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 123/273 (45%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F ADI C QETKL+ +++ +L DGY
Sbjct: 1 MKLISWNVNGLRACVG-----KGFLDYFKEQQADIFCLQETKLQEGQIELEL---DGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P++ G G+E+
Sbjct: 53 YWNYAE-----KKGYSGTAIFTKEK----------PISVHYGI-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F + VY P + E R+ +++++ K + L
Sbjct: 85 H--------DKEGRVITLEFEKFYMITVYTPNS-QEKLARLDYRMKWEEDF-KNYLLELD 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + V GDLN+A ID R +AG F+ E + L+ESG F D FR
Sbjct: 135 KKKPVIVCGDLNVAHKEIDLKNPKTNRKNAG--FSDEEREK--MTKLLESG--FVDSFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P + + Y+ W A N G RID+ L +
Sbjct: 189 FYPNKTDIYSWWSYRFSARAKNAGWRIDYFLVS 221
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 137/298 (45%), Gaps = 56/298 (18%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR + F +L +L + DI+C QETKL+ +E+K L+ DGY
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSAL-QLAQRENFDILCLQETKLQVKDVEEIKKTLI--DGY 332
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
+ SF+SC+ + + GYSG A R+K P++ G TGL SGS
Sbjct: 333 DHSFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGL---SGSDH--- 371
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF 174
D+EGR V + F L N Y P + + R+ ++++ +
Sbjct: 372 ------------DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIK 418
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFR 229
L + + + + GDLN A ID + + F + E R F + ++ G F D FR
Sbjct: 419 ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTEEE-RQSFGANFLDKG--FVDTFR 475
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
+HP YT W G + N G R+D+ L + HD +++ +N D
Sbjct: 476 KQHPGVV-GYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHD----SYILPDINGSD 528
>gi|406893678|gb|EKD38677.1| hypothetical protein ACD_75C00647G0002 [uncultured bacterium]
Length = 500
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 116/268 (43%), Gaps = 48/268 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R V++ G L +FDAD++ QETK++ +L +L GY S++
Sbjct: 228 MKCISWNVNGIRA-VAKKG-FADQLRTFDADVVALQETKIQEDQLTDELKNIPGYTSYWH 285
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C R GYSGVA + R+ PVA G G +F
Sbjct: 286 CAE-----RKGYSGVAFYTRIP----------PVAVRYGL-------------GDPEF-- 315
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + + L N+Y P + +E VR+ KL+F L + L Q +
Sbjct: 316 ------DCEGRVLTLEFADCYLINIYFPNS-AEKLVRLAHKLRFNDRLLG-YARELEQKK 367
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD N+A ID + + F R W S + F D FR E
Sbjct: 368 PVILCGDFNVAHKEIDLKNPKTNVKNAGFTPEERAWMDSFV---AAGFVDTFRL-FCEDP 423
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAG 264
+ YT W A N G RID+ +G
Sbjct: 424 DQYTWWSYRFNARAKNVGWRIDYFCVSG 451
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 44/280 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V++ + DADI C QE+KL+ ++ +L +GY +++
Sbjct: 1 MKLISWNVNGIRSCVTK--GFLEYFKEMDADIFCIQESKLQEGQIDLEL---EGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ G G+E+
Sbjct: 56 YAE-----KKGYSGTAIFTKEK----------PLSVSYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + + +F + VY P + +E R+ +++ + + + +L + +
Sbjct: 86 ------DKEGRVITLEFENFYMVTVYTPNSKNE-LARLDYRMVWEDAFRDYLK-VLDEKK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ V GDLN+A ID + + F RS E F D FR +P+ AY
Sbjct: 138 PVIVCGDLNVAHKEIDLKNPKTNLRNAGFTEEERSKFTELLNAGFVDTFRYFYPDEVGAY 197
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279
+ W A N G RID+ L + + D + H+ V
Sbjct: 198 SWWSYRFNARAKNAGWRIDYFLVSNSVKDKLEDAKIHSEV 237
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 137/333 (41%), Gaps = 95/333 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ T+NVNG+R +++ G+L++ + DI+C QETK + +++ + A GY ++++
Sbjct: 1 MKLTTWNVNGIRSVLNK-GALQEYVLEAQPDILCLQETKAQPEQVDLGMEFA-GYHAYWN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ + G G+E+
Sbjct: 59 SAV-----KKGYSGTAIFTKEE----------PISVQYGL-------------GIEEH-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQKRWE 173
D EGR + ++ + L VY P A D R+ ++ L F L++
Sbjct: 89 ------DQEGRVITAEYADYYLVTVYTPNA-KRDLTRLSYRQVWEDDFLAFIKKLEETKP 141
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVF 228
+ C GDLN+A ID + + F K E + +VE+G D F
Sbjct: 142 VIFC--------GDLNVAHKEIDLANPKTNTKNAGFTKEEREKF--DQIVENG--LVDAF 189
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288
R ++PE AYT W GA N G RID+ + + +T + E I
Sbjct: 190 RFRYPEAVGAYTWWSYMGGARARNIGWRIDYFVVS-------------EVLTSRIQEVKI 236
Query: 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 321
D + GSDH PV M
Sbjct: 237 RAD-------------------VTGSDHCPVEM 250
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 44/265 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DAD+ C QETKL+ +++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFEKLDADMFCLQETKLQLHQIELEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F RVK P+ G G+E+
Sbjct: 56 SAV-----KKGYSGTAIFTRVK----------PLNVIYGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L Y P + E R+++++ + + + L +
Sbjct: 86 ------DQEGRVITAEYDNFYLVTCYTPNSQRE-LARLEYRMTWEDAF-RAYLLELDAKK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID + + F R + E F D FR +P+ +AY
Sbjct: 138 PVILCGDLNVAHNEIDLKNPKTNRKNAGFTDEEREKMTELLNAGFTDTFRKLYPDVTDAY 197
Query: 240 TCWPSNTGAEQFNYGTRIDHILCAG 264
+ W A N G RID+ + +
Sbjct: 198 SWWSYMGKARDRNVGWRIDYFITSA 222
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 122/284 (42%), Gaps = 58/284 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + DADI C QETKL+ +++ DL +GY +++
Sbjct: 1 MKFISWNVNGLRAAVKK--GFMDYFNEADADIFCLQETKLQEGQIELDL---NGYYDYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P ++ GL
Sbjct: 56 YAV-----KKGYSGTAIFTK-KEPL------------------------RVFYGL----- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQKRWEFLLC 177
+ + D EGR + + F VY P + E R+ F+ F + ++ L
Sbjct: 81 -SVAEHDQEGRVITLEFEQFYFITVYTPNSQPELARLAYRMSFEEAFLNYVKN-----LD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
Q + + GDLN+A ID + P F+ E R F ++L ESG F D FR +
Sbjct: 135 QEKPVIFCGDLNVAHKEIDLKNPKTNRRNPGFSDEE-RGKFTTVL-ESG--FVDTFRHFY 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
PE+ AY+ W A N G RID+ + + + D + H
Sbjct: 191 PEKEGAYSWWSYRMNARARNTGWRIDYFVVSSRLRDKLIDAKIH 234
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 133/326 (40%), Gaps = 84/326 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R V + DADI C QE+KL+ +++ DL + Y +++
Sbjct: 1 MKIVSWNVNGIRACVKK--GFMDFFKDVDADIFCIQESKLQEGQIQLDL---ENYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + P S V+ + ++
Sbjct: 56 YAE-----RKGYSGTAVFTK-QEPLS---VSYGIGEDDD--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
+ EGRC+ + F L NVY P + D R++ +L H ++ ++ L +
Sbjct: 86 ------EPEGRCITLEFEDFYLLNVYTPNS-KRDLSRLEDRL---HWEERVRAYIKELDE 135
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 235
+ + GDLN+A ID + + + F R S L+ G F D FR +PE+
Sbjct: 136 IKPVIYCGDLNVAHNEIDLRNPKSNHGNSGFTTEEREKMSTLLNEG--FVDSFRHLYPEK 193
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
++YT W + + N G RID+ + + D
Sbjct: 194 DQSYTWWSYMSKVRERNIGWRIDYFIVSDRLKDSLKD----------------------- 230
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYM 321
GM T + GSDH PVY+
Sbjct: 231 ---------AGMHTDVLGSDHCPVYI 247
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 116/271 (42%), Gaps = 53/271 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNG+R V + +++ SFDAD+ C QETK + ++K L YE F
Sbjct: 1 MKLVSWNVNGIRASVKK--GFEEVVSSFDADVFCVQETKAQDDQVKEALAGISDYELF-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C KG YSG A + K P + T D K
Sbjct: 57 CNSAEKKG---YSGTAILSK-KKPLTFTV---------------------------DMGK 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADS---EDTVRIQFKLQFFHVLQKRWEFLLC 177
+E D+EGR ++ F L NVY P + S R + F L+K L
Sbjct: 86 EEH---DTEGRITHVEYEEFHLVNVYVPNSGSGLKRLDYRSIWDKDFTAYLKK-----LS 137
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKN----EFRI-WFRSMLVESGGSFFDVFRSKH 232
+ + + + GD N+A A D + ++ K + I F ++L E + D FR+ H
Sbjct: 138 ESKPLIITGDFNVAHTANDLANPKSNYNKTSGFTQVEIDGFDAILKEL--NLVDSFRTLH 195
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P YT W GA N G RID+ L +
Sbjct: 196 PTTFHKYTFWSMRGGARGRNVGWRIDYFLVS 226
>gi|20090923|ref|NP_616998.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
gi|19916002|gb|AAM05478.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
Length = 260
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 115/265 (43%), Gaps = 47/265 (17%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR + + G L LL+ D+IC QETK ++L ++ GY ++F
Sbjct: 7 LISWNVNGLRAAMKK-GFLDLLLEQ-KFDVICVQETKASPEKLPREVKNIPGYHNYFVSA 64
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
R+GYSGV TF + K P E G G+E+F
Sbjct: 65 E-----RSGYSGVGTFSKQK----------PFKVETGM-------------GIEEF---- 92
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRI 182
D EGR + D+ +F L N+Y P + R+++K+ F+ L +G+++
Sbjct: 93 ----DREGRFLRVDYENFTLMNIYFPNGKASQE-RLEYKMSFYDAFLDYANALKAEGKKL 147
Query: 183 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 238
+ GD+N A ID + + F R W + D FR + E
Sbjct: 148 VICGDVNTAHREIDLARPKENETTSGFLPEERAWMDKFF---DAGYLDTFRLFNSEGGN- 203
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCA 263
Y+ W T A + N G R+D+ +
Sbjct: 204 YSWWSLRTRARERNVGWRLDYFFVS 228
>gi|335042075|ref|ZP_08535102.1| exonuclease III [Methylophaga aminisulfidivorans MP]
gi|333788689|gb|EGL54571.1| exonuclease III [Methylophaga aminisulfidivorans MP]
Length = 259
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 115/269 (42%), Gaps = 47/269 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T NVNG+R + L +AD++C QETK + +L+ D+ GY ++
Sbjct: 1 MRIITANVNGIRAAARK--GFFDWLPKQNADVVCIQETKAQVHQLEDDIFRPQGYHCYY- 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GYSGVA +C+ + EV + + EE
Sbjct: 58 ----HDAEKKGYSGVALYCKAE----PDEVIVGMGNEE---------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + G+ + ++Y P S++ +I K + + + + + GR
Sbjct: 88 -----FDAEGRYIEARFGNLSVISLYMPSGSSKEERQIA-KYRCMDFFENKMQDMKDSGR 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NIA D + + + F R W + E G F D FR + P+
Sbjct: 142 DVLICGDWNIAHKNEDIRNWKGNLKNSGFLPEERAWLDKLFDEMG--FIDAFR-ELPQEE 198
Query: 237 EAYTCWPSNTGAEQFNYGTRID-HILCAG 264
YT W + A N G RID HIL G
Sbjct: 199 HQYTWWSNRGQARANNVGWRIDYHILTPG 227
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 127/273 (46%), Gaps = 61/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + +ADI+C QETK++ ++ L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTYVQETEADILCLQETKVQDGQVSLQL---EGYHAYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F S E L V F GL G++D
Sbjct: 57 YAV-----KKGYSGTAVF--------SKEKPLHV-----FYGL----------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + H + N Y P A R+Q++ F LQK L
Sbjct: 87 ------DQEGRVITLEFEHVFVVNCYTPNAKRGLERIDYRLQWEADFKDYLQK-----LD 135
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG F++ E R F ++L F D FR
Sbjct: 136 RKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRY 189
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P++ AY+ W T A + N G R+D+++ +
Sbjct: 190 LYPDQEGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|384085723|ref|ZP_09996898.1| exodeoxyribonuclease III Xth [Acidithiobacillus thiooxidans ATCC
19377]
Length = 253
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 134/327 (40%), Gaps = 83/327 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + L+ + D++C QETK +L + +GY S ++
Sbjct: 1 MRLYSWNVNGWRAACRK--GLQDWVKETGPDLLCTQETKADPAKLTAAESRLEGYGSCWA 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVATF ++ P ++ L G+E F
Sbjct: 59 VAE-----RAGYSGVATFSKI--PGQTSHAGL---------------------GIERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQKRWEFL 175
D EGR V+TD G F L+NVY P +D+ R+ FKL F+ H+ QK
Sbjct: 89 ------DREGRVVVTDCGDFDLYNVYFPNG-KKDSERLAFKLDFYAAFLAHINQK----- 136
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPE 234
GR + GD+N A ID + + F R+ + + + D FR HP+
Sbjct: 137 AAAGRPVIFCGDVNTAHQPIDLARPKENQRISGFLPEERACMDQWQQAGWVDSFRHLHPD 196
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 294
Y+ W T A + G R+D+ +HQ L+ R
Sbjct: 197 EAR-YSWWSQRTDARSRDIGWRLDYFW-----VHQS------------------LLPRLR 232
Query: 295 WKPGNAPRWKGGMSTRLEGSDHAPVYM 321
G++T + GSDH PV++
Sbjct: 233 ---------AAGIATEVMGSDHCPVWL 250
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 136/308 (44%), Gaps = 71/308 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F +ADI C QETKL+ +++ +L +GY
Sbjct: 1 MKLISWNVNGLRAAVQ-----KGFLDYFKNENADIFCVQETKLQEGQIELEL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P EV+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-KKP---IEVSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWE 173
D EGR + ++ F + VY P + E+ R+ +++ +F + + K
Sbjct: 86 ---------DKEGRVITLEYDDFYMITVYTPNS-QEELARLSYRMSWEDEFRNYVMK--- 132
Query: 174 FLLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFD 226
L + + + + GDLN+A ID R +AG F+ E R F +L F D
Sbjct: 133 --LDKLKPVIICGDLNVAHQEIDLKNPKSNRKNAG--FSDEE-RAKFTELL---KNGFVD 184
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 286
FR +PE AY+ W A + N G RID+ + + + HN T + C
Sbjct: 185 SFRHFYPELTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHN-ETLGSDHC 243
Query: 287 DILIDYKR 294
+++ K+
Sbjct: 244 PVVLKLKK 251
>gi|42525008|ref|NP_970388.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus HD100]
gi|39577219|emb|CAE81042.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus HD100]
Length = 257
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 111/270 (41%), Gaps = 52/270 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + R+ + ADI+C QE K+ + +K D E F+
Sbjct: 1 MKMISWNVNGLRSVHRK--NFREWFEKEKADIVCLQEIKITDEAIKKD-------EEFYH 51
Query: 61 CTRTSDKG----RTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+ + GYSG+A + + + + +P
Sbjct: 52 PAKYHSSWAFAEKAGYSGLALYSKKEPDDVRIGLGIP----------------------- 88
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
K D EGR + D G + N Y P + E T R+ FKL+F +KR + L
Sbjct: 89 --------KFDIEGRWLEADFGPITVVNSYWPNSQREHT-RLPFKLEFCAAAEKRLQALR 139
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKH 232
+GR + + GD NIA ID + + F R W L + D FR K
Sbjct: 140 KKGREVIICGDFNIAHKEIDLRNPKTNMKNAGFLPEERAWMTRFL--DKLEWVDSFR-KF 196
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILC 262
+ E YT W G + N G R+D+ L
Sbjct: 197 EQGPEHYTWWSYRPGVREKNIGWRLDYFLV 226
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 124/276 (44%), Gaps = 69/276 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F +AD+ C QETKL QE + DL + +GY
Sbjct: 1 MKLISWNVNGIRACVR-----KGFLDYFQEVNADVFCIQETKL--QEGQIDLQL-EGYYQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S + G++
Sbjct: 53 YWNYAV-----KKGYSGTAVFTKQK-PLS------------------------VSYGVDK 82
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQK 170
S+D EGR + + + NVY P + D R++ +LQ + + L
Sbjct: 83 ESED-------EGRIITLEFEQCYVVNVYTPNS-KRDLARLEERLQWEDDLLVYLNKLNS 134
Query: 171 RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDV 227
R +LC GDLN+A A ID + P+ + F I R + L+ SG F D
Sbjct: 135 RKAVILC--------GDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDT 184
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
FR +P + EAYT W + N G RID+ + +
Sbjct: 185 FRYLYPNQEEAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|406873572|gb|EKD23688.1| hypothetical protein ACD_81C00194G0004 [uncultured bacterium]
Length = 252
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 123/265 (46%), Gaps = 45/265 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NVNGLR V + G L + +ADI+C QE KL+ +++ +L + GY ++++
Sbjct: 1 MKIYSWNVNGLRS-VHKKGFL-EWFKKEEADIVCLQEIKLQEEQIPEELRVIKGYTAYYN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GY+GVA + + ST + G+E F
Sbjct: 59 TG-----TRKGYAGVAVYTKQIPRKVSTTL-----------------------GMERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + D+ FI+ +Y P+ + D + +KL+ + L + L +G+
Sbjct: 89 ------DCEGRFLRLDYDDFIVIALYIPQG-ARDKRNLTYKLEVYDTLLVYLKKL--KGK 139
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML--VESGGSFFDVFRSKHPERREA 238
+ V+GDLNIA +D + F R L +E G F D FR+++ E
Sbjct: 140 NVIVIGDLNIAHTELDLARPKQNTKNIMFTPEEREKLDALEKLG-FVDTFRTENKEGGN- 197
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCA 263
Y+ WP A + N G RID++ +
Sbjct: 198 YSWWPYFANARERNLGWRIDYVFVS 222
>gi|268679182|ref|YP_003303613.1| exodeoxyribonuclease III [Sulfurospirillum deleyianum DSM 6946]
gi|268617213|gb|ACZ11578.1| exodeoxyribonuclease III [Sulfurospirillum deleyianum DSM 6946]
Length = 254
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 47/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R ++ + +D D++C QE K ++ L + F+
Sbjct: 1 MKLISWNVNGIRAVANK--NAFSWVDEEKPDVLCLQEIKAEAHQIPEPL-----FTHPFT 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + + GYSG +F F +T A + D +K
Sbjct: 54 CKHINSATKKGYSGTMSFS--TRLFDTTNTAWHI----------------------DHTK 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
EGR + G +LFNVY P + R++ K+QF+ E L G+
Sbjct: 90 --------EGRILEHHFGDVVLFNVYFPNGQQSEE-RLRHKMQFYSDFLAHTEALRTMGK 140
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD+N A ID + + + F R W ++L + + D FR H +
Sbjct: 141 GIIICGDVNTAHREIDLANPKANEDISGFLPIERAWIDTLLAKG---YLDTFREVHGNVK 197
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
+AY+ W +GA + N G RID+ +
Sbjct: 198 DAYSWWSYRSGARERNVGWRIDYFFIS 224
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 60/288 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLKAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 86 ------DTEGRVITLEFEAFFMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYIKNLDK 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279
+P+ +AY+ W A N G RID+ + + + D + H+ V
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRIDYFVVSKRLKDKLVDAKIHSEV 237
>gi|354597622|ref|ZP_09015639.1| exodeoxyribonuclease III [Brenneria sp. EniD312]
gi|353675557|gb|EHD21590.1| exodeoxyribonuclease III [Brenneria sp. EniD312]
Length = 268
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 118/274 (43%), Gaps = 47/274 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR R Q + +++ D+I QETK+ D V GY F+
Sbjct: 1 MKVVSFNINGLRARPHQLAA---IIEQHRPDVIGLQETKVHDDMFPLDEVSQYGYHVFY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA C K+P P+A GF E + +I+ + DF+
Sbjct: 57 ------HGQKGHYGVALLC--KTP--------PIAVRRGFPTDEEDAQRRII--MADFA- 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
T+ G + N Y P+ +S D ++ K +F+ LQ E
Sbjct: 98 --------------TEQGTLTVINGYFPQGESRDHPIKFPAKTRFYQDLQNYIEQHHLAA 143
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--------SGGSFFDVFRSK 231
+ ++GDLNI+P +D G D K R S L E G D FR+
Sbjct: 144 HPLIIMGDLNISPTDLD-IGIGEDNRKRWLRTGKCSFLPEEREWLARLQGWGLVDTFRAA 202
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 265
+P+ + ++ + + N G RID IL + P
Sbjct: 203 NPDCNDRFSWFDYRSAGFDTNRGLRIDLILASRP 236
>gi|398341999|ref|ZP_10526702.1| exodeoxyribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 254
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 120/267 (44%), Gaps = 49/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++ N NG+R ++ L LL S D +CFQETK + +L +++ GY+++F
Sbjct: 1 MKLICLNCNGIRSAWTK--GLGDLLSSERPDFVCFQETKAQSDQLSAEIWEKLGYKAYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV+ + + K P ++ + EE
Sbjct: 59 SAE-----KKGYSGVSLWAK-KEP---KKITYGIGVEE---------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR V+ D+G F ++ VY P + D +R K++F K + L +
Sbjct: 88 -----FDKEGRSVLADYGDFAIWTVYFPSGTTGD-IRQAAKMRFLDEFLKLSKKLRKKHP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD+NIA D D + AKN E R W L +SG + D FR +PE+
Sbjct: 142 NLILCGDVNIAHTEKDIHDPKGN-AKNSGFLPEERAWLTEFL-KSG--WIDSFRELYPEK 197
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILC 262
+E Y+ W GA N G RID+
Sbjct: 198 QE-YSWWTFRAGARGNNKGWRIDYFFV 223
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 122/270 (45%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DS DADI C QETKL+ ++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFDSVDADIFCLQETKLQAGQIDLDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKTE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + + F + VY P + +E R+ +++ F + + L + +
Sbjct: 86 ------DDEGRVITLEFDKFFMVTVYTPNSQAE-LKRLDYRMTFEDAILAYVK-KLDETK 137
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P
Sbjct: 138 PVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTAFL-EAG--FVDSFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ +AY+ W A N G RID+ + +
Sbjct: 192 DLEDAYSWWSYRMNARARNTGWRIDYFVVS 221
>gi|253997612|ref|YP_003049676.1| exodeoxyribonuclease III Xth [Methylotenera mobilis JLW8]
gi|253984291|gb|ACT49149.1| exodeoxyribonuclease III Xth [Methylotenera mobilis JLW8]
Length = 256
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 119/275 (43%), Gaps = 47/275 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI++ N+NG+R ++ L L + DAD+IC QE K + ++ ++ +GY +F
Sbjct: 1 MKIISLNLNGIRSATNK--GLYAWLKNQDADVICMQELKAQAGDMTEQMLNPEGYYGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV + + K A+ GL G+ED
Sbjct: 59 YAE-----KKGYSGVGIYSKTK-------------ADSVIEGL----------GIED--- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
IDSEGR + G+ + ++Y P S + R FK + L+ GR
Sbjct: 88 -----IDSEGRYLEARFGNLSVVSLYLPSGSSGEE-RQAFKFSVMERFMPQLHALVQSGR 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NIA D + + + F R W + + G + DV+R+ +P+
Sbjct: 142 DVVICGDWNIAHKEADLKNWKGNRKNSGFLPEERAWLTQLFDDMG--WVDVYRTLYPDTT 199
Query: 237 EA-YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+A YT W + A N G RID+ + A P K
Sbjct: 200 DACYTWWSNRGQAWANNVGWRIDYQI-ATPAFAAK 233
>gi|227826512|ref|YP_002828291.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|229583674|ref|YP_002842175.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
gi|227458307|gb|ACP36993.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|228018723|gb|ACP54130.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
Length = 247
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 138/325 (42%), Gaps = 81/325 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVISF 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R R GYSGV T ++K P+ +G
Sbjct: 56 PAR-----RKGYSGVMTLTKIK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + +
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRKAK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 238
+ + GD NIA ID + P + R WF L F D FR HP R+
Sbjct: 138 PVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK- 193
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 298
Y+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 194 YSWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID------- 233
Query: 299 NAPRWKGGMSTRLEGSDHAPVYMCL 323
++GSDHAP+ + L
Sbjct: 234 ------------IQGSDHAPIILEL 246
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 140/330 (42%), Gaps = 82/330 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + +ADI C QETKL QE + ++ + + Y +++
Sbjct: 1 MKLISWNVNGLRACVNK--GFYEYFKEANADIFCLQETKL--QEGQIEMEIGEAYHQYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ P S + GLE+
Sbjct: 57 YAE-----KKGYSGTAVFTKME-PLS------------------------VRYGLEE--- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ-- 178
+ EGR + + F L VY P A D R+ ++L++ + R+ L Q
Sbjct: 84 ----DHEPEGRVITLEFQDFYLVTVYTPNA-KRDLSRLDYRLEW----EDRFRNYLLQLD 134
Query: 179 GRRIFVV-GDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERR 236
G++ VV GDLN+A ID +A + + F R M F D +R +P++
Sbjct: 135 GKKPVVVCGDLNVAHQEIDLKNAKSNRGNSGFTPEEREKMTSLLAAGFVDTYRYFYPDQT 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+AYT W + N G RID+ L + +R
Sbjct: 195 DAYTWWSFMPKVRERNIGWRIDYFLAS-----------------------------ERLA 225
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326
P + G+ +++ GSDH PV + LG +
Sbjct: 226 PALL---RAGIDSQVMGSDHCPVVLELGTI 252
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 135/302 (44%), Gaps = 65/302 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR + + G L D DADI QETKL+ +++ +L +GYE +++
Sbjct: 1 MKAVSWNVNGLRACLGK-GFLEYFKD-VDADIFAIQETKLQEGQVELEL---EGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F ++ SP S VA + EE
Sbjct: 56 YAV-----KKGYSGTAVFTKI-SPLS---VAYGIDIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D+EGR + + +F NVY P R + R++++ F L K L
Sbjct: 86 ------DAEGRVITLEFENFYFVNVYVPNSQRGLTRLDYRMKWEDDFREYLIK-----LD 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFR 229
+ + GD N+A ID R +AG F E R + E S F D FR
Sbjct: 135 GIKPVICCGDKNVAHQEIDLKNPKSNRKNAG--FTDEE-----RQKMTELLNSGFIDAFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 289
+P++++AYT W A + N G RID+ + + + D++ H+ V + C +L
Sbjct: 188 YLYPDKKDAYTWWSYMFKAREKNVGWRIDYFIVSERLKDKIKDVEIHSHVMGS-DHCPVL 246
Query: 290 ID 291
+D
Sbjct: 247 LD 248
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 123/274 (44%), Gaps = 64/274 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ + +ADI C QE+K+++ + D GY +++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFNEVNADIFCIQESKMQKDQ--GDFSF-QGYSEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV ++K L VA + G +
Sbjct: 56 SAE-----KKGYSGVVVLSKIK--------PLQVAYDMGIS------------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + ++ F L NVY P A E R+++++++ F K+ L
Sbjct: 84 ----HHDKEGRIITAEYERFYLVNVYTPNAKRE-LERLEYRMEWEDDFRAFVKK----LK 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + + + GDLN+A ID R +AG D + + S L+ESG F D FR
Sbjct: 135 KHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SELLESG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P AY+ W A + N G RID+ LC+
Sbjct: 188 HFYPTLEGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 61/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + +ADI+C QETK++ ++ + +GY ++++
Sbjct: 1 MKLMSWNVNGLRAVMKKI-DINTYVQETEADILCLQETKVQDGQVS---LQPEGYHAYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P+ G G++D
Sbjct: 57 YAV-----KKGYSGTAVFSKEK----------PLHVLYGL-------------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + H + N Y P A R+Q++ F LQK L
Sbjct: 87 ------DQEGRVITLEFEHVFVVNCYTPNAKRGLERIDYRLQWEADFKDYLQK-----LD 135
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG F++ E R F ++L F D FR
Sbjct: 136 RKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRY 189
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+R AY+ W T A + N G R+D+++ +
Sbjct: 190 LYPDREGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 124/279 (44%), Gaps = 66/279 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD------ADIICFQETKLRRQELKSDLVMADG 54
MK +++NVNG R +L++ +D F AD +C QETKL + +++ D G
Sbjct: 1 MKFISWNVNGFR-------ALQRKMDVFSWLKETGADALCIQETKLHQDQVQID---TPG 50
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
Y F+ +D R GYSG A F + K P+ G G
Sbjct: 51 YHQFW-----NDAVRKGYSGTAIFTKNK----------PLRVTYGM-------------G 82
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKR 171
+E D EGR + ++ + L VY P A D R+ ++L++ F KR
Sbjct: 83 IEVH--------DQEGRLITLEYEDYYLVTVYTPNA-KRDLTRLAYRLEWGAAFTDYMKR 133
Query: 172 WEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVF 228
L + + + GDLN+A AID + + F I R + L+ +G F D F
Sbjct: 134 ----LDEKKPVIFCGDLNVAHQAIDLTYPKNNKGNSGFTIEEREDFTALLNNG--FVDSF 187
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
R +PER +AY+ W A + N G RID+ + + CL
Sbjct: 188 RHLYPERTDAYSWWSFLFNARERNIGWRIDYFVLS-KCL 225
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 127/273 (46%), Gaps = 61/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + +ADI+C QETK++ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTYVQETEADILCLQETKVQDGQVS---LQPEGYHAYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F S E L V F GL G++D
Sbjct: 57 YAV-----KKGYSGTAVF--------SKEKPLHV-----FYGL----------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + + + N Y P A R+Q++ F LQK L
Sbjct: 87 ------DQEGRVITLEFENVFVVNCYTPNAKRGLERIDYRLQWEADFKDYLQK-----LD 135
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG F++ E R F ++L F D FR
Sbjct: 136 RKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDTFRY 189
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+R AY+ W T A + N G R+D+++ +
Sbjct: 190 LYPDREGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|333994968|ref|YP_004527581.1| exodeoxyribonuclease III [Treponema azotonutricium ZAS-9]
gi|333734315|gb|AEF80264.1| exodeoxyribonuclease III [Treponema azotonutricium ZAS-9]
Length = 259
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 117/273 (42%), Gaps = 47/273 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R V + G + + +++ AD++C QETK R ++L +L E
Sbjct: 1 MKIISFNVNGIRA-VEKKGFV-QWMENESADMVCLQETKARPEQLSPELRGIKDKEGKPY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + + P S L+ +
Sbjct: 59 FAYWASAAKAGYSGVAIYAKTE-PLS--------------VNFLKKA------------- 90
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ D EGR + + F L + Y P + R+ +KL+F + K + + QGR
Sbjct: 91 ----EFDDEGRVLQAEFKDFTLISAYFPNSQDRGK-RLDYKLRFCDAIMKLCKKFVTQGR 145
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ GD NIA ID A P + E R W M + F D FR +P
Sbjct: 146 HFVLCGDYNIAHTPIDL--AHPKANEENAGYLPEERAW---MDAYTKAGFVDTFRHFYPG 200
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
+++ YT W A + N G RID+ C P
Sbjct: 201 KKDQYTWWSYRMNARERNVGWRIDY-HCVDPAF 232
>gi|358639330|dbj|BAL26627.1| exodeoxyribonuclease III [Azoarcus sp. KH32C]
Length = 263
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 48/274 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG-YESFF 59
++++T N+NG+R S+ L + DAD++C QE K + +L +D++ A G + +F
Sbjct: 2 LRVITLNLNGIRSAASK--GFYDWLAAQDADVVCLQELKAQHPDL-TDVMRAPGDFAGYF 58
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+ GYSGV + R ++P +++EGL
Sbjct: 59 HPAE-----KKGYSGVGLYTR-RTP------------------------DRVVEGL---- 84
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
+ ID+EGR + D G + ++Y P S + R+Q K F L G
Sbjct: 85 --GIADIDAEGRFLQLDFGPLSIVSLYLPSGSSSEE-RLQIKFGFMERFLPHMAALRASG 141
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 235
R + V GD NIA +D + + + F R W ++ E G + DV+R HP+
Sbjct: 142 REVIVCGDWNIAHKEVDLKNWKSNQKNSGFLPEERAWLTRVIDEQG--WVDVYRRLHPDT 199
Query: 236 REA-YTCWPSNTGAEQFNYGTRIDHILCAGPCLH 268
+A YT W + A N G R+D+ + H
Sbjct: 200 TDACYTWWSNRGQAWAKNVGWRLDYQIATPGVAH 233
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 131/300 (43%), Gaps = 65/300 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL + D Y
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QEGQIDLNVEDYY----- 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T + + GYSG A F + K P S T GL G+E+
Sbjct: 53 -TYWNYAVKKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P A R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEGFYIITLYTPNA-KRGLERLDYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ--------SHNFVTCHVN 284
P++ AY+ W GA N G R+D+ + + +Q D + H V H+N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERIKNQIKDAKINSEVMGSDHCPVELHIN 251
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 31/268 (11%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNGLR + + S ++ DADI+ QETKL+ +++ DL GY +S
Sbjct: 9 LKLASWNVNGLRAVLKKDPSFTDIVSELDADILGLQETKLQEGQVEIDL---PGYHQVWS 65
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F R P S +AA GL D
Sbjct: 66 YAE-----RKGYSGTAVFTR-DEPLSVRHADAVLAAGRA-------------AGLTDDQL 106
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC--- 177
+ + +EGR + F +VY P A E R+ ++ + + FLL
Sbjct: 107 ELVAVAATEGRVCALEFERFWFVDVYTPNAQGE-LARLDTRMAWDDAYRA---FLLSLED 162
Query: 178 -QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPER 235
G+ + GD N+A ID + + F RS VE + D FR+ +P+
Sbjct: 163 ETGKPVVTCGDFNVAHNEIDLKNPKSNRGNAGFSDEERSKFVELLDAGYTDTFRAANPDL 222
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
AY+ W A + N G RID+ L +
Sbjct: 223 EGAYSWWSYRFNARKNNAGWRIDYFLVS 250
>gi|399573814|gb|AFP49246.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 228
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 27/180 (15%)
Query: 35 FQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV 94
QETK++R++L ++V+ G++ FS K + GYSGVA + R P+
Sbjct: 1 MQETKIQRKDLHDEMVLVPGWDVVFSLP----KHKKGYSGVAIYTR-------NATCCPI 49
Query: 95 AAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSEGRCVITDHGHF 140
AEEG TG+L S + + + + + L +DSEGRCV+ + F
Sbjct: 50 RAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSEGRCVVLEFPAF 109
Query: 141 ILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA 200
+L Y P + D+ R F+L++ + L R L+ G+++ + GDLN+ +D C+
Sbjct: 110 VLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLNVIRDEMDTCNV 167
>gi|374315128|ref|YP_005061556.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350772|gb|AEV28546.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 271
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 118/266 (44%), Gaps = 49/266 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNGLR Q + L DADI C QETKL+ ++ D + Y +F+S
Sbjct: 23 VKLISWNVNGLR--ACQKKGFEEYLSRADADIFCLQETKLQEDQIALDKL---SYHTFWS 77
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ S E+ P
Sbjct: 78 FAE-----KKGYSGTALFSKIQPISVSREIGHP--------------------------- 105
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+DSEGR V + + + Y P + E RI+ ++ + +K + L + +
Sbjct: 106 -----LDSEGRTVTAEFEDYFVICCYTPNS-QEKLARIELRMDWDAAFRK-YVSDLDKKK 158
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERRE 237
+ + GDLN+A ID + + + I R S L+ SG F D FR +P++ +
Sbjct: 159 PVLICGDLNVAHNPIDLKNPKQNEQNAGYSIQERQGFSTLLASG--FTDSFRYLYPDKTD 216
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
AY+ W A + N G RID+ L +
Sbjct: 217 AYSWWSYRFHAREKNIGWRIDYWLAS 242
>gi|253688361|ref|YP_003017551.1| exodeoxyribonuclease III [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754939|gb|ACT13015.1| exodeoxyribonuclease III [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 272
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 119/272 (43%), Gaps = 47/272 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR R Q L +++ D+I QETK+ + V GY ++
Sbjct: 5 MKVVSFNINGLRARPHQ---LAAIIEQHQPDVIGLQETKVHDDMFPLEDVSQYGYHVYY- 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA C+ A P+A GF + + +I+ + DF+
Sbjct: 61 ------HGQKGHYGVALLCK----------AQPIAVRRGFPTDEDDAQRRII--MADFA- 101
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
T+HG F + N Y P+ +S D V+ K +F+ LQ E
Sbjct: 102 --------------TEHGTFTIVNGYFPQGESRDHPVKFPAKTRFYQDLQTYLEQHHSAT 147
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--------SGGSFFDVFRSK 231
+ + V+GD+NI+P +D G + K R S L E G D FR+
Sbjct: 148 QPLIVMGDVNISPTDLD-IGIGEENRKRWLRTGKCSFLPEEREWMARLQGWGLIDTFRAA 206
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE + ++ + + N G RID IL +
Sbjct: 207 NPESNDRFSWFDYRSAGFDDNRGLRIDLILAS 238
>gi|410940025|ref|ZP_11371846.1| exodeoxyribonuclease III [Leptospira noguchii str. 2006001870]
gi|410784888|gb|EKR73858.1| exodeoxyribonuclease III [Leptospira noguchii str. 2006001870]
Length = 254
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 112/268 (41%), Gaps = 49/268 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + D ICFQETK + ++ + L GY F
Sbjct: 1 MKFISLNCNGIRSSLEK--GLADYIRDTKPDFICFQETKANQDQVSTSLWEEGGYTPIFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + K P KI G+ D
Sbjct: 59 SAE-----KKGYSGVAILYK-KPP------------------------EKITIGIGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D VR K++F + QK +
Sbjct: 86 ---PFFDKEGRSIYLEYSNFALWNLYFPSGTTGD-VRQAAKMKFLDLFQKESSKRRKKQS 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
I V GD+NIA + D D + AKN E R W L + D FR HP++
Sbjct: 142 NIIVCGDVNIAHTSQDIHDPKGN-AKNSGFLPEEREWLSGFL---NKGWVDTFRYLHPDK 197
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
+E Y+ W +GA N G RID+
Sbjct: 198 QE-YSWWTFRSGARAKNKGWRIDYFFVT 224
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 60/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDK 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+ +AY+ W A N G RID+ + + + D + H
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|357418867|ref|YP_004931859.1| exodeoxyribonuclease III [Thermovirga lienii DSM 17291]
gi|355396333|gb|AER65762.1| exodeoxyribonuclease III [Thermovirga lienii DSM 17291]
Length = 262
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 119/278 (42%), Gaps = 52/278 (18%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
KI T+NVN +R R+ L + L+ + DI+C QETK S+ G++ F+
Sbjct: 5 KIATFNVNSVRSRLH---ILERWLNDTNIDILCLQETKTEDATFPSEFFHQKGFQVFYC- 60
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
G Y+GVA + K + S + GLL ++++
Sbjct: 61 ------GEKAYNGVAVASKEKPAWVSFGLG---------DGLLPDGRTRMVH-------- 97
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 181
C+ D H I N+Y P+ + D + KL+FF L K + +
Sbjct: 98 ----------CLFGDDLHLI--NLYVPQGKALDHPDYEMKLKFFDRLLKYLDKNFTPESK 145
Query: 182 IFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPER 235
I VVGDLN+AP +D + PD +N + + F S+L E G F DVFR P
Sbjct: 146 IIVVGDLNVAPTDMDVTN--PDNKRNHVCFHEDVKKAFNSLL-EWG--FVDVFRKHRPGE 200
Query: 236 REAYTCWPSNT-GAEQFNYGTRIDHILCAGPCLHQKHD 272
E ++ W A + N G RIDH+L P + D
Sbjct: 201 GE-FSFWDYRVKNALERNIGWRIDHLLATKPVAERSKD 237
>gi|429084900|ref|ZP_19147890.1| Exodeoxyribonuclease III [Cronobacter condimenti 1330]
gi|426546013|emb|CCJ73931.1| Exodeoxyribonuclease III [Cronobacter condimenti 1330]
Length = 268
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 120/285 (42%), Gaps = 61/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++N+NGLR R Q +L ++ D+I QETK+ + V GY F+
Sbjct: 1 MKFISFNINGLRARPHQLAAL---VEQHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA + A PVA GF G E + +I
Sbjct: 57 ------HGQKGHYGVALLTK----------ATPVAVRRGFPGDDEDAQRRI--------- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
I +E I G+ + N Y P+ +S D V+ K +F+ LQ+ E +L +
Sbjct: 92 -----IMAEIPSAI---GNITVINGYFPQGESRDHAVKFPAKAKFYQDLQQYLETVLTKD 143
Query: 180 RRIFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSF 224
+ ++GD+NI+PA +D +C P E R W +L
Sbjct: 144 NPVLIMGDMNISPADLDIGIGEESRKRWLRTGKCSFLP-----EEREWMGRLL---NWGL 195
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 269
D FR +P+ + Y+ + + N G RID +L + P + +
Sbjct: 196 VDTFRHANPDAADRYSWFDYRSKGFDDNRGLRIDLLLASAPLMER 240
>gi|421130875|ref|ZP_15591067.1| exodeoxyribonuclease III [Leptospira kirschneri str. 2008720114]
gi|410357978|gb|EKP05183.1| exodeoxyribonuclease III [Leptospira kirschneri str. 2008720114]
Length = 267
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 117/282 (41%), Gaps = 52/282 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + + D ICFQETK + ++ L GY F
Sbjct: 14 MKFISLNCNGIRSSLEK--GLADYIRNIKPDFICFQETKANQDQVPPSLWEEGGYTPIFH 71
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + K P KI G+ D
Sbjct: 72 SAE-----KKGYSGVAVLYK-KPP------------------------EKITIGIGD--- 98
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D VR K++F + QK +
Sbjct: 99 ---PFFDKEGRSIYLEYSNFALWNLYFPSGTTGD-VRQAAKMKFLDLFQKESSKRRKKQP 154
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
I V GD+NIA D D + AKN E R W L + D FR HP++
Sbjct: 155 NIIVCGDVNIAHTPQDIHDPKGN-AKNSGFLPEEREWLSGFL---NKGWVDTFRYLHPDK 210
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
+E Y+ W GA N G RID+ K +++SH+
Sbjct: 211 QE-YSWWTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 248
>gi|398338895|ref|ZP_10523598.1| exodeoxyribonuclease III [Leptospira kirschneri serovar Bim str.
1051]
gi|418676689|ref|ZP_13237967.1| exodeoxyribonuclease III [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688052|ref|ZP_13249209.1| exodeoxyribonuclease III [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418695031|ref|ZP_13256057.1| exodeoxyribonuclease III [Leptospira kirschneri str. H1]
gi|418742572|ref|ZP_13298942.1| exodeoxyribonuclease III [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
gi|421090701|ref|ZP_15551492.1| exodeoxyribonuclease III [Leptospira kirschneri str. 200802841]
gi|400322589|gb|EJO70445.1| exodeoxyribonuclease III [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409957190|gb|EKO16105.1| exodeoxyribonuclease III [Leptospira kirschneri str. H1]
gi|410000583|gb|EKO51212.1| exodeoxyribonuclease III [Leptospira kirschneri str. 200802841]
gi|410737476|gb|EKQ82217.1| exodeoxyribonuclease III [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410749947|gb|EKR06930.1| exodeoxyribonuclease III [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
Length = 254
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 116/282 (41%), Gaps = 52/282 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + + D ICFQETK + ++ L GY F
Sbjct: 1 MKFISLNCNGIRSSLEK--GLADYIRNIKPDFICFQETKANQDQVPPSLWEEGGYTPIFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA L + KI G+ D
Sbjct: 59 SAE-----KKGYSGVAV-------------------------LYKKPPEKITIGIGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D VR K++F + QK +
Sbjct: 86 ---PFFDKEGRSIYLEYSNFALWNLYFPSGTTGD-VRQAAKMKFLDLFQKESSKRRKKQP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
I V GD+NIA D D + AKN E R W L + D FR HP++
Sbjct: 142 NIIVCGDVNIAHTPQDIHDPKGN-AKNSGFLPEEREWLSGFL---NKGWVDTFRYLHPDK 197
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
+E Y+ W GA N G RID+ K +++SH+
Sbjct: 198 QE-YSWWTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 235
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 126/285 (44%), Gaps = 60/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDN 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+ +AY+ W A N G RID+ + + + D + H
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 135/335 (40%), Gaps = 94/335 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + ++ + DAD C QETKL+ +++ D GY +++
Sbjct: 1 MKFISWNVNGLRAIVKK--GFVEIFEELDADFFCLQETKLQEGQIELDF---PGYYDYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K S + P
Sbjct: 56 YAE-----KKGYSGTAIFTKHKPLDVSYGIGKP--------------------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
+ D EGR + + ++ + Y P + SE R+ +++Q+ F + K+ L
Sbjct: 84 ----EHDQEGRVITLSYPNYYVVTCYTPNSKSE-LKRLDYRMQWEDDFQLYLKK----LD 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + GDLN+A ID + AG F+K E R+ F ++L F D FR
Sbjct: 135 SEKPVILCGDLNVAHENIDLKNWKTNQLSAG--FSKEE-RMKFSALL---DAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 290
+P+ AYT W A + N G RID+ C L H+ E IL
Sbjct: 189 FYPDLEGAYTWWNYRFNARKTNAGWRIDY-FCVSTRLQD------------HLQEARILD 235
Query: 291 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325
D + GSDH PV + L E
Sbjct: 236 D-------------------IVGSDHCPVELILKE 251
>gi|312131268|ref|YP_003998608.1| exodeoxyribonuclease iii xth [Leadbetterella byssophila DSM 17132]
gi|311907814|gb|ADQ18255.1| exodeoxyribonuclease III Xth [Leadbetterella byssophila DSM 17132]
Length = 254
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 124/297 (41%), Gaps = 48/297 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVNG+R +++ L + L + DI+C QE KL EL L GY ++
Sbjct: 1 MKITTFNVNGIRSAINK--GLLEWLSKENPDILCLQEIKLSETELVESLFTDLGYHCYWY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA ++ + ++I++G+E
Sbjct: 59 PAI-----KKGYSGVAILSKIPA-------------------------NQIVKGIE---- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
EL DSEGR ++ F L + Y P + D VR + K +F E L G
Sbjct: 85 HELY--DSEGRIILAQFADFQLVSAYFPSGTTGD-VRQEIKYKFLDDFLIYAEKLKATGT 141
Query: 181 RIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD+NI ID + +A E R W E G F D FR K +
Sbjct: 142 PLLICGDVNICHKEIDIHNPKSNAKTSGFLPEERAWV-DRFCECG--FVDTFRHKVKDPH 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
YT W GA N G RID+I A ++ H+ V + C + +++K
Sbjct: 199 H-YTWWSYRAGARGKNLGWRIDYIFAANMLPESIQNVHIHSDVMMS-DHCPVSLEFK 253
>gi|227829121|ref|YP_002830900.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|229577921|ref|YP_002836319.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238618580|ref|YP_002913405.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284996506|ref|YP_003418273.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
gi|227455568|gb|ACP34255.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|228008635|gb|ACP44397.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238379649|gb|ACR40737.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284444401|gb|ADB85903.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
Length = 247
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 138/325 (42%), Gaps = 81/325 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVI-- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGV T ++K P+ +G
Sbjct: 54 ---SFPAKRKGYSGVMTLTKIK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + +
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRKAK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 238
+ + GD NIA ID + P + R WF L F D FR HP R+
Sbjct: 138 PVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK- 193
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 298
Y+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 194 YSWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID------- 233
Query: 299 NAPRWKGGMSTRLEGSDHAPVYMCL 323
++GSDHAP+ + L
Sbjct: 234 ------------IQGSDHAPIILEL 246
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 123/270 (45%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DS DADI C QETKL+ ++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFDSVDADIFCLQETKLQAGQIDLDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG F + + P++ + G G+E+
Sbjct: 57 ------AVKKGYSGTXXFTKKE----------PLSVQYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + + F + VY P + +E R+ +++ F + + L + +
Sbjct: 86 ------DTEGRVITLEFEKFFMVTVYTPNSQAE-LKRLDYRMTFEDAILAYVK-KLDETK 137
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P
Sbjct: 138 PVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTAFL-EAG--FVDSFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ +AY+ W A N G RID+ + +
Sbjct: 192 DLEDAYSWWSYRMNARARNIGWRIDYFVVS 221
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 116/268 (43%), Gaps = 31/268 (11%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNGLR + + S ++ DADI+ QETKL+ +++ DL GY +S
Sbjct: 9 LKLASWNVNGLRAVLKKDPSFTDIVAELDADILGLQETKLQEGQVELDL---PGYHQVWS 65
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A FCR + P S +AA GL D
Sbjct: 66 YAE-----RKGYSGTAVFCR-EEPLSVRHADAVLAAGRA-------------AGLSDDEL 106
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ-G 179
+ + +EGR + F +VY P A E R+ ++ + + L + G
Sbjct: 107 ELVAVAATEGRVCALEFERFWFVDVYTPNAQGE-LARLSTRMAWDDAYRAFLRSLEDETG 165
Query: 180 RRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD N+A ID + + G +E R F +L + D FR+ +P
Sbjct: 166 KPVVTCGDFNVAHNEIDLKNPKSNRGNAGFSDEERAKFGELL---DAGYTDTFRAANPNL 222
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
AY+ W A + N G RID+ L +
Sbjct: 223 EGAYSWWSYRFNARKNNAGWRIDYFLVS 250
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 116/266 (43%), Gaps = 48/266 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V + + DADI C QETKL+ +++ +L +GY +++
Sbjct: 1 MKLVSWNVNGLRACVRK--GFLDYFNEIDADIFCIQETKLQEGQIELEL---NGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ + G L S++
Sbjct: 56 YAE-----KKGYSGTAVFTKFK----------PISVKYG----LSNEESQV--------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
EGR + + +F L NVY P + D R+ +L++ VL E +L R
Sbjct: 88 --------EGRILTLEFENFFLINVYTPNS-QRDLARLDVRLEWEDVLL---EHVLAHDR 135
Query: 181 R--IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERRE 237
+ + GDLN+A ID + ++ + F R + F D R HP+
Sbjct: 136 IKPVVLCGDLNVAHREIDIRNYKSNYGNSGFTDEEREKMTRFLNAGFIDTLRYFHPDTEG 195
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
YT W + N G RID+ + +
Sbjct: 196 IYTWWSYMKTVRERNIGWRIDYFIVS 221
>gi|421108297|ref|ZP_15568837.1| exodeoxyribonuclease III [Leptospira kirschneri str. H2]
gi|410006563|gb|EKO60314.1| exodeoxyribonuclease III [Leptospira kirschneri str. H2]
Length = 267
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 117/282 (41%), Gaps = 52/282 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + + D ICFQETK + ++ L GY F
Sbjct: 14 MKFISLNCNGIRSSLEK--GLADYIRNIKPDFICFQETKANQDQVPPSLWEEGGYTPIFH 71
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + K P KI G+ D
Sbjct: 72 SAE-----KKGYSGVAVLYK-KPP------------------------EKITIGIGD--- 98
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D VR K++F + QK +
Sbjct: 99 ---PFFDKEGRSIYLEYSNFALWNLYFPSGTTGD-VRQAAKMKFLDLFQKESSKRRKKQP 154
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
I V GD+NIA D D + AKN E R W L + D FR HP++
Sbjct: 155 NIIVCGDVNIAHTPQDIHDPKGN-AKNSGFLPEEREWLSGFL---NKGWVDTFRYLHPDK 210
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
+E Y+ W GA N G RID+ K +++SH+
Sbjct: 211 QE-YSWWTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 248
>gi|424841662|ref|ZP_18266287.1| exodeoxyribonuclease III [Saprospira grandis DSM 2844]
gi|395319860|gb|EJF52781.1| exodeoxyribonuclease III [Saprospira grandis DSM 2844]
Length = 257
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 113/264 (42%), Gaps = 46/264 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+++YNVNGLR + + + D DII QE K R+++ + + A GYE +
Sbjct: 1 MKVLSYNVNGLRAAIRK--GFVDWVKENDIDIIGLQEAKALREQVDLEELQAAGYEHIYW 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +VK+ LE G G+E F
Sbjct: 59 HAAE----KKGYSGVVVLSKVKAD-------------------LEVQGM----GIERF-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + D G + L N Y P S +VR + K F + + L +
Sbjct: 90 ------DKEGRVLRLDFGDWTLLNCYFPSGTS-GSVRQEVKYDFLDSIYDWVQELKKERP 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+I + GD NIA ID + + + F R W L E G F D FR +HPE +
Sbjct: 143 KILLQGDYNIAHEEIDIHNPKRNHKTSGFLPEERAWMSKWLEE--GGFVDSFRQQHPEEQ 200
Query: 237 EAYTCWPSNTG-AEQFNYGTRIDH 259
+ ++ W + A N G RID+
Sbjct: 201 K-FSWWSMRSKTARANNKGWRIDY 223
>gi|225024988|ref|ZP_03714180.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
gi|224942218|gb|EEG23427.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
Length = 257
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 117/274 (42%), Gaps = 47/274 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I++ NVNG+R + + L + ADI+C QE K + +L + G +
Sbjct: 1 MRIISANVNGIRSAYKK--GFYEYLAASGADIVCIQELKAQEADLDDSMRAPHGMHGVWH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGVA + + + P + G G+ +F
Sbjct: 59 CAE-----KRGYSGVALYSKRE----------PDRVQTGM-------------GIAEF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR V D G+ + ++Y P S + R Q K +F L QGR
Sbjct: 89 ------DAEGRFVQVDFGNLSVISLYLPSGSSSEE-RQQLKFRFLAAFYPMLRELKTQGR 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD NIA ID + + + F R W ++VE G + D++R+ +PE
Sbjct: 142 DIVICGDWNIAHQNIDLKNWKGNLKNSGFLPEEREWIGKVIVELG--WVDIWRTLYPE-M 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
YT W A + G RID+ + A P L ++
Sbjct: 199 PGYTWWSQRGQAYAKDVGWRIDYQM-ATPALAER 231
>gi|315925763|ref|ZP_07921970.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
gi|315620872|gb|EFV00846.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
Length = 254
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 128/327 (39%), Gaps = 79/327 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ ++NVNG+R ++ L D++ QE K +L L +GY FF+
Sbjct: 1 MKLYSWNVNGIR--AAEKKGFVDWLQREQPDVLGIQELKAEPDQLSDALKDVEGYHVFFN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A + + + P +I+ GL D
Sbjct: 59 PAE-----RKGYSGTAVYYK-REP------------------------KRILTGLSD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ + EGR +I ++ F L+N+Y P D R+QFK+ F+ + + +G
Sbjct: 86 ---ERFNHEGRTIILEYPDFTLYNIYFPNGSQSDE-RLQFKMDFYDGFWHDVDERVARGE 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD+N A ID + + ++ F R W G + D +R +PE +
Sbjct: 142 KVIICGDVNTAHREIDLKNPKSNAKRSGFLPIEREWMDHFF---AGGYIDTYRYFYPE-Q 197
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
Y+ W A + N G RID+ + N D+L D
Sbjct: 198 VTYSWWSYRFNARKNNAGWRIDYFFASD-------------------NAKDLLAD----- 233
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ T + GSDH P+ + L
Sbjct: 234 --------AAIHTDVTGSDHCPISLTL 252
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 118/270 (43%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF DAD C QETK++ + DL GYE
Sbjct: 6 MRFVSWNVNGLR------AALKKGFMESFKELDADAFCLQETKMQEGQAILDL---PGYE 56
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F RVK P S VA + EE
Sbjct: 57 QYFYSAE-----KKGYSGTAIFTRVK-PLS---VAYGLGIEEH----------------- 90
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
D EGR + + L VY P + + R+ ++L + + FLL
Sbjct: 91 ----------DHEGRVITMEFEDIYLVTVYTPNSKNA-LARLDYRLVWEDAFRA---FLL 136
Query: 177 -CQGRRIFVV-GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHP 233
+ ++ VV GDLN+A ID + + F R L E G F D FR+ +P
Sbjct: 137 DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKLTELLGAGFIDTFRALYP 196
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ AYT W A + N G RID+ L +
Sbjct: 197 DLTGAYTWWSYLRHARETNAGWRIDYFLVS 226
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 127/280 (45%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R + P+A G G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTRKE----------PIAVTYGL-------------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F ++L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTNILEEG---FVDTYRFLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
P++ AY+ W GA N G R+D+ + + H+ D
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 127/273 (46%), Gaps = 61/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + +ADI+C QETK++ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTYVQETEADILCLQETKVQDGQVS---LQPEGYHAYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F S E L V F GL G++D
Sbjct: 57 YAV-----KKGYSGTAVF--------SKEKPLHV-----FYGL----------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + + + N Y P A R+Q++ F LQK L
Sbjct: 87 ------DQEGRVITLEFENVFVVNCYTPNAKRGLERIDYRLQWEADFKDYLQK-----LD 135
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG F++ E R F ++L F D FR
Sbjct: 136 RKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRY 189
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+R AY+ W T A + N G R+D+++ +
Sbjct: 190 LYPDREGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|254796778|ref|YP_003081615.1| exodeoxyribonuclease III [Neorickettsia risticii str. Illinois]
gi|254590017|gb|ACT69379.1| exodeoxyribonuclease III [Neorickettsia risticii str. Illinois]
Length = 260
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 114/266 (42%), Gaps = 43/266 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ T+NVN +RQR ++ LL S D D++ QE K + + + Y
Sbjct: 2 LKVATWNVNSIRQRAE---AVSALLVSEDLDVLLLQELKCQESDFPLHVFHDLSYNVILK 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GY+GVA R+ S E+ + ++ +EG+ F
Sbjct: 59 CQK-------GYNGVAIASRLPITKISDEIYM-------------DGEARYVEGVISFFD 98
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-FLLCQG 179
+C+ L +VY P A + + R ++K+QF L +R +LL
Sbjct: 99 ----------KCI-------RLISVYVPNAQAAGSPRFEYKMQFHDALARRIHCYLLNNN 141
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREA 238
I + GD+N AP ID D F I RS L E FD FR K+P ++E
Sbjct: 142 DIILLGGDMNAAPEDIDVYDHVKLDGCTGFHIEERSKLRELLNLGLFDTFRMKYPTKQE- 200
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAG 264
++ W G Q N G RIDHIL +
Sbjct: 201 FSWWDYRGGGLQRNEGMRIDHILASA 226
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 60/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 86 ------DTEGRVITLEFEDFYMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDK 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+ +AY+ W A N G RID+ + + + D + H
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 116/280 (41%), Gaps = 63/280 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V + + DADI C QE+K++ +L +L +GY +++
Sbjct: 1 MKLISWNVNGIRACVQK--GFLEFFQEADADIFCIQESKMQAGQLDLEL---EGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S V + EE
Sbjct: 56 YAE-----KKGYSGTAVFTK-KEPLS---VQYGIGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F VY P + SE + RIQ++ F L+ L
Sbjct: 86 ------DKEGRVITLEFEEFYFVTVYTPNSQSELARLSYRIQWETDFLAYLKG-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
Q + + GDLN+A A ID R +AG +E R F +L F D FR
Sbjct: 135 QKKPVIFAGDLNVAYAEIDLKNPKTNRKNAG---FTDEERAKFGEVL---KAGFIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+PE Y+ W A N G RID+ C L +
Sbjct: 189 FYPEMEGIYSWWSYRFSARAKNAGWRIDY-FCVSESLKDR 227
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 121/271 (44%), Gaps = 64/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V++ + DADI C QETKL QE + DL +GYES+++
Sbjct: 1 MKFISWNVNGLRACVTK--GFMDFFNEVDADIFCLQETKL--QEGQIDL-NPEGYESYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S VA + +E
Sbjct: 56 YA-----DKKGYSGTAIFTK-KKPLS---VAYGIGIDEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F VY P + +E R+++++++ F K L
Sbjct: 86 ------DHEGRVITLEFEDFYFVTVYTPNSQTE-LKRLEYRMRWEDDFRAYLKN----LD 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + + GDLN+A ID R +AG D +N+F + +ESG F D FR
Sbjct: 135 SKKPVVMCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKF-----TEFLESG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
+P+ Y+ W A + N G RID+
Sbjct: 188 YFYPDAEGMYSWWSYRFNARKNNAGWRIDYF 218
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 60/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MRLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDK 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+ +AY+ W A N G RID+ + + + D + H
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRIDYFIVSERLKDKLVDAKIH 234
>gi|229580822|ref|YP_002839221.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
gi|228011538|gb|ACP47299.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
Length = 247
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 137/325 (42%), Gaps = 81/325 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVI-- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGV T ++K P+ +G
Sbjct: 54 ---SFPAKRKGYSGVMTLTKIK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + +
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRKAK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 238
+ + GD NIA ID + P + R WF L F D FR HP R+
Sbjct: 138 PVILCGDFNIAHQNIDGAFSNPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK- 193
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 298
Y+ W A N G R+D+ + + +L+ + DILID
Sbjct: 194 YSWWSYMGKARDKNLGLRLDYCIVS-------EELKD------RIKMADILID------- 233
Query: 299 NAPRWKGGMSTRLEGSDHAPVYMCL 323
++GSDHAP+ + L
Sbjct: 234 ------------IQGSDHAPIILEL 246
>gi|385774841|ref|YP_005647409.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
gi|323473589|gb|ADX84195.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
Length = 247
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 138/325 (42%), Gaps = 81/325 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVI-- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGV T ++K P+ +G
Sbjct: 54 ---SFPAKRKGYSGVMTLTKIK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + +
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRRAK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 238
+ + GD NIA ID + P + R WF L F D FR HP R+
Sbjct: 138 PVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK- 193
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 298
Y+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 194 YSWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID------- 233
Query: 299 NAPRWKGGMSTRLEGSDHAPVYMCL 323
++GSDHAP+ + L
Sbjct: 234 ------------IQGSDHAPIILEL 246
>gi|255013539|ref|ZP_05285665.1| exodeoxyribonuclease [Bacteroides sp. 2_1_7]
gi|410103604|ref|ZP_11298525.1| exodeoxyribonuclease III (xth) [Parabacteroides sp. D25]
gi|409236333|gb|EKN29140.1| exodeoxyribonuclease III (xth) [Parabacteroides sp. D25]
Length = 253
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 114/268 (42%), Gaps = 49/268 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYN NGLR V + L + L D++C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIITYNTNGLRAAVGK--GLPEWLAQEQPDVLCIQETKLQPDQFPAETFEALGYKSYLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIERY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQDFKMVWLEDFQKYVVELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 142 NLILCGDYNICHEPIDIHDPIRN-AKNSGFLPEEREWMTRFL---SAGFIDTFRLLNPEK 197
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
+E YT W + N G RID+ + +
Sbjct: 198 QE-YTWWSYRFNSRAKNKGWRIDYCMVS 224
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QEGQIDL-NVEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+++++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNS-KRGLERLEYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|68490863|ref|XP_710758.1| potential DNA repair apurinic/apyrimidinic endonuclease Apn2p
[Candida albicans SC5314]
gi|68490945|ref|XP_710720.1| potential DNA repair apurinic/apyrimidinic endonuclease Apn2p
[Candida albicans SC5314]
gi|46431957|gb|EAK91472.1| potential DNA repair apurinic/apyrimidinic endonuclease Apn2p
[Candida albicans SC5314]
gi|46431999|gb|EAK91510.1| potential DNA repair apurinic/apyrimidinic endonuclease Apn2p
[Candida albicans SC5314]
Length = 451
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 155/401 (38%), Gaps = 119/401 (29%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLRKLLDSFDADIICFQETKLRRQELK---SDL 49
++ +T+NVNG++ ++ L + ADII QE KL L+ S L
Sbjct: 24 IRYITFNVNGVKTIFNYHPWNQLKNNKDFNTLFNLLQADIITLQELKLTETSLQQQMSQL 83
Query: 50 VMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA-----LPVAAEEGFTGLL 104
V Y+SF S T + GYSGV F R +P S+ + AEEG TG L
Sbjct: 84 VHLSDYKSFISIPVT----KKGYSGVGLFIR--NPKSNENKKHRKHLTVIKAEEGITGWL 137
Query: 105 -------ETSGSKI--------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGP 148
+S +KI + G D K L +DSEGRCV + + ++F VY P
Sbjct: 138 PSSSSSSSSSANKIPYRESANNIGGYTDIEKLPGLHLDSEGRCVCVELADNTVIFAVYCP 197
Query: 149 RADSEDTVRIQ-FKLQFFHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDA----- 200
A+S+ T + F+L F +L +R L L ++I ++GD+NIA ID +
Sbjct: 198 -ANSQCTYDGELFRLTFIKLLLQRCYNLVKLYPQKKIVIMGDINIAIDMIDHAETIELGI 256
Query: 201 -----GPDFAKNEFRIW----------------------FRSMLVESGGS---------- 223
P F + F + RS+ +
Sbjct: 257 KENLLKPSFRGHNFEVLNYENCVSFRTATEARKLLNKYVIRSIWQDLKNEKNPNQKEREK 316
Query: 224 ----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279
+D R R + YT W + T A Q N+G+RID IL + + Q
Sbjct: 317 EEPFLYDTTRLVQGRRMKMYTVWNTLTNARQINHGSRIDLILFSDEKMVQ---------- 366
Query: 280 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
+ NA W M GSDH PV+
Sbjct: 367 ----------------RISNADIWPFLM-----GSDHCPVF 386
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 127/283 (44%), Gaps = 56/283 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+ +++NVNGLR + + + +AD C QE K+ +L +L +GYE+F++
Sbjct: 1 MRFISWNVNGLRACIKK--GFLDYFNEINADFFCLQEIKMSEGQLDLEL---EGYETFYN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSG A F + K P++ + G G+E+
Sbjct: 56 YAQ-----RKGYSGTAIFTKFK----------PLSVKYGM-------------GMEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + ++ F L Y P + E +R+ +++ + + + L + +
Sbjct: 86 ------DNEGRLITLEYDDFFLVTCYTPNSKQE-LLRLDYRMVWEDAF-RNYLLDLNKTK 137
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ V GDLN+A ID R +AG F E S+L++SG F D FR +P
Sbjct: 138 SVIVCGDLNVAHKEIDLKNPKTNRKNAG--FTDEEREK--MSILLDSG--FTDTFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
++ Y+ W + + N G RID+ L + + D Q H
Sbjct: 192 DKENEYSWWSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIH 234
>gi|194376980|dbj|BAG63051.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 41/208 (19%)
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE 219
++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 1 MRFYRLLQIRTEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSN 60
Query: 220 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 61 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------- 109
Query: 273 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 332
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAK 148
Query: 333 STPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 149 QCPPLCTRFLPEFAGTQLKILRFLVPLE 176
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 296 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 344
>gi|426396096|ref|XP_004064291.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 3
[Gorilla gorilla gorilla]
Length = 347
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 41/208 (19%)
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE 219
++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSS 60
Query: 220 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 61 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------- 109
Query: 273 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 332
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAK 148
Query: 333 STPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 149 QCPPLCTRFLPEFAGTQLKILRFLVPLE 176
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 296 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 344
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 57/288 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S +M GL
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPIS------------------------VMYGL----- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
+ + D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 82 -GIEEHDQEGRVITLEFDDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCVLEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 280
PE+ AY+ W GA N G R+D+ + + H+ D + ++ VT
Sbjct: 192 PEQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVT 239
>gi|414144888|ref|NP_001258677.1| DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2 [Homo
sapiens]
gi|119613616|gb|EAW93210.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_c
[Homo sapiens]
gi|221045760|dbj|BAH14557.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 41/208 (19%)
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE 219
++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSN 60
Query: 220 SG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 61 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------- 109
Query: 273 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 332
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAK 148
Query: 333 STPSLASRYLPIIRGVQQTLVSVLMKRE 360
P L +R+LP G Q ++ L+ E
Sbjct: 149 QCPPLCTRFLPEFAGTQLKILRFLVPLE 176
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 296 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 344
>gi|399020091|ref|ZP_10722231.1| exodeoxyribonuclease III [Herbaspirillum sp. CF444]
gi|398096101|gb|EJL86430.1| exodeoxyribonuclease III [Herbaspirillum sp. CF444]
Length = 258
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 111/269 (41%), Gaps = 47/269 (17%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
KIV+ N+NG+R + + + AD IC QE K + ++ + + GY F
Sbjct: 3 KIVSANLNGIRSAAKK--GFFEWMAKESADFICVQELKAQEADMTEEFLTPKGYVGHFHY 60
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSGV + + K P A GF G ++F
Sbjct: 61 AE-----KKGYSGVGLYSKRK----------PDAVRIGF-------------GTKEF--- 89
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRR 181
D EGR V D G + ++Y P S + R Q K +F V + L GR
Sbjct: 90 -----DDEGRYVECDFGDITVISLYCPSGSSSEE-RQQAKFRFMEVFLPHLQELKDSGRE 143
Query: 182 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR- 236
I + GD NIA ID + + + F R W + E G DV+R+ HPE
Sbjct: 144 IVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLTRVFDELG--LVDVYRTIHPETTG 201
Query: 237 EAYTCWPSNTGAEQFNYGTRID-HILCAG 264
+AYT W + A N G RID HI AG
Sbjct: 202 DAYTWWSNRGQAWANNVGWRIDYHIATAG 230
>gi|114330240|ref|YP_746462.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
gi|114307254|gb|ABI58497.1| Exodeoxyribonuclease III [Nitrosomonas eutropha C91]
Length = 254
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 138/335 (41%), Gaps = 92/335 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVN L+ R+ Q + L+ D++C QETKL+ + D + GY+S ++
Sbjct: 1 MKIATWNVNSLKVRLQQ---VIDWLNVNQPDVLCLQETKLQDEFFPVDELAQAGYQSIYA 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA +V +G + L DF
Sbjct: 58 -------GQKTYNGVALLSKV-------------------------TGVDVCAALPDFD- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D + R + +G + VY P + D+ + +KL++ +L L Q R
Sbjct: 85 ------DPQKRLIAATYGDLRIICVYVPNGERVDSEKYAYKLRWLSILNS----FLQQER 134
Query: 181 ----RIFVVGDLNIAPAAIDRCDAGPDFAKNEF------RIWFRSMLVESGGSFFDVFRS 230
++ ++GD NIAP DR P+ K + R FR +L F +F
Sbjct: 135 TRYGKVALLGDFNIAPE--DRDVYDPEAWKGQVLCSEAERQAFRGLLDTGFVDSFHLF-- 190
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 290
+ PE+ YT W A + N G RIDHIL + H+ D +C
Sbjct: 191 EQPEK--IYTWWDYRMMAFRRNRGLRIDHILLS----HETAD-------SCAT------- 230
Query: 291 DYKRWKPGNAPRWKGGMSTRLE-GSDHAPVYMCLG 324
W+ APR +LE SDHAPV++ L
Sbjct: 231 ----WQVDKAPR-------KLERPSDHAPVWVELA 254
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 60/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 6 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 62 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 90
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 91 ------DTEGRVITLEFEDFYMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDK 140
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 141 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 194
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+ +AY+ W A N G RID+ + + + D + H
Sbjct: 195 YPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 239
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 60/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MRLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDK 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+ +AY+ W A N G RID+ + + + D + H
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|394989886|ref|ZP_10382719.1| exodeoxyribonuclease III Xth [Sulfuricella denitrificans skB26]
gi|393791386|dbj|GAB72358.1| exodeoxyribonuclease III Xth [Sulfuricella denitrificans skB26]
Length = 253
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 115/268 (42%), Gaps = 50/268 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+NVN L+ R+ Q + L + D++C QETKL + + A GY++ FS
Sbjct: 1 MKLVTWNVNSLKVRLPQ---VLDWLAAHQPDVLCLQETKLEDVNFPAAAISAAGYQTVFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA + TS S+I+ + ++
Sbjct: 58 -------GQKTYNGVAILSK-------------------------TSASEIITAIPGYA- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D + R + + N+Y P S D+ + Q+KL + L L
Sbjct: 85 ------DVQKRVLAATIAGVRVINLYIPNGQSVDSDKYQYKLGWLEALTAWLTDELACHP 138
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRS-KHPERR 236
R+ V+GD NIAP D D + F + R LV+SG D FR + PE+
Sbjct: 139 RLAVLGDFNIAPDDRDVHDPKAWEGQVLFSLPEREAFQRLVDSG--LTDSFRLFEQPEK- 195
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAG 264
Y+ W A + N G RIDHIL +G
Sbjct: 196 -IYSWWDYRMNAFRRNMGLRIDHILLSG 222
>gi|218781643|ref|YP_002432961.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
gi|218763027|gb|ACL05493.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
Length = 253
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 50/265 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K V++NVNG+R V + G ++ F+ADI+ QET+ +++L DL+ Y S++
Sbjct: 2 LKFVSWNVNGIRA-VEKKG-FTDMVKDFNADILAIQETRALKEQLSEDLINIADYTSYWF 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV+ + + ++P +M G++
Sbjct: 60 SAE-----KKGYSGVSVYTK-QTPLD------------------------VMYGMDSPEH 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR + ++ F L NVY P A + VR+ +KL F L K + L + +
Sbjct: 90 ------DAEGRVITLEYDDFYLMNVYFPNAQPK-LVRLDWKLGFNQTLHK-FANALGEKK 141
Query: 181 RIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD N+A ID + + P ++ E R W + G + D FR + E
Sbjct: 142 SVVLCGDYNVAHKPIDLANPKQNEQNPGYSPEE-RAWMDEFI---GSGYVDAFRMFNQE- 196
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHI 260
+ YT W A N G RID+
Sbjct: 197 PDNYTWWSYRFNARAKNIGWRIDYF 221
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 143/338 (42%), Gaps = 89/338 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + LD F DADI C QETKL QE + DL + + YE
Sbjct: 1 MKLISWNVNGLRACVN-----KGFLDYFREMDADIFCVQETKL--QEGQIDLDLGEEYEQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S + G+E+
Sbjct: 54 YWNYAL-----KKGYSGTAVFTK-KKPLS------------------------VRYGIEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEF 174
+ EGR + + F L NVY P R S R++++ +F LQK
Sbjct: 84 -------NEEPEGRILTLEFESFFLVNVYTPNSKRDLSRLEERLEWEERFRFYLQK---- 132
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHP 233
L + + V GDLN+A ID ++ + + F R M + F D FR +P
Sbjct: 133 -LDACKPVIVCGDLNVAHQVIDLKNSKSNHGNSGFTTEEREKMTILQDAGFTDTFRHFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
++ +AYT W + N G RID+ L + D L+D +
Sbjct: 192 DQTDAYTWWSYMPKVRERNIGWRIDYFLVSSRLR-------------------DFLVDAR 232
Query: 294 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 331
+ + + GSDH P+++ + + + PQ
Sbjct: 233 -------------IDSNILGSDHCPIHLIMNDC-DTPQ 256
>gi|385772122|ref|YP_005644688.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
gi|323476236|gb|ADX81474.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
Length = 247
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 138/325 (42%), Gaps = 81/325 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVI-- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGV T ++K P+ +G
Sbjct: 54 ---SFPAKRKGYSGVMTLTKLK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + ++ + L + +
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIEN-FVLKLRKAK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 238
+ + GD NIA ID + P + R WF L F D FR HP R+
Sbjct: 138 PVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK- 193
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 298
Y+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 194 YSWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID------- 233
Query: 299 NAPRWKGGMSTRLEGSDHAPVYMCL 323
++GSDHAP+ + L
Sbjct: 234 ------------IQGSDHAPIILEL 246
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 126/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQDGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFHMITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCVLEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P+++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQKGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 125/280 (44%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQGGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S VA + EE
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLS---VAYGLGIEEH--------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EEKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTRVLEE---GFVDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
P++ AY+ W GA N G R+D+ + + Q D
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKEQITD 231
>gi|189345695|ref|YP_001942224.1| exodeoxyribonuclease III Xth [Chlorobium limicola DSM 245]
gi|189339842|gb|ACD89245.1| exodeoxyribonuclease III Xth [Chlorobium limicola DSM 245]
Length = 258
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 47/262 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++N+NG+R R + SL + DI+ QE K +++ + D Y F++
Sbjct: 1 MKIASWNINGIRARNA---SLEAWILRNQPDILLLQEVKAHEEDIPPAISDLDAYRKFWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSG R +P E TG+L T+
Sbjct: 58 GSTV----RKGYSGTGILLRDSCKVDDVVWEVPDFDIENRTGVLHTT------------- 100
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
HF L Y PR +S++ RI KL + L++ LL GR
Sbjct: 101 ------------------HFTLIGTYVPRGESDEHYRI--KLDYLESLRRYICSLLDSGR 140
Query: 181 RIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
++ + GD+NIA ID + G + E R ++ + D+ RS HP+
Sbjct: 141 QVILAGDMNIAHRDIDVHRSQNKPGAVGLRPEERA---AIDAQIASGLQDIMRSMHPDAA 197
Query: 237 EAYTCWPSNTGAEQFNYGTRID 258
+ +T WP A + N G RID
Sbjct: 198 DLFTWWPYWKPARERNLGWRID 219
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 60/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + D+DI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDSDIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDK 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+ +AY+ W A N G RID+ + + + D + H
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 122/274 (44%), Gaps = 64/274 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ + +ADI C QE+K+++ + D GY +++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFNEVNADIFCIQESKMQKDQ--GDFSFQ-GYSEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV ++K L V + G +
Sbjct: 56 SAE-----KKGYSGVVVLSKIK--------PLQVTYDMGIS------------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + ++ F L NVY P A E R+++++++ F K+ L
Sbjct: 84 ----HHDKEGRIITAEYERFYLVNVYTPNAKRE-LERLEYRMEWEDDFRAFVKK----LK 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + + + GDLN+A ID R +AG D + + S L+ESG F D FR
Sbjct: 135 KHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SELLESG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P AY+ W A + N G RID+ LC+
Sbjct: 188 HFYPTLEGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|238878531|gb|EEQ42169.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 451
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 155/403 (38%), Gaps = 121/403 (30%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLRKLLDSFDADIICFQETKLRRQELK---SDL 49
++ +T+NVNG++ ++ L + ADII QE KL L+ S L
Sbjct: 24 IRYITFNVNGVKTIFNYHPWNQLKNNKDFNTLFNLLQADIITLQELKLTETSLQQQMSQL 83
Query: 50 VMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA-----LPVAAEEGFTGLL 104
V Y+SF S T + GYSGV F R +P S+ + AEEG TG L
Sbjct: 84 VHLSDYKSFISIPVT----KKGYSGVGLFIR--NPKSNENKKHRKHLTVIKAEEGITGWL 137
Query: 105 ---------ETSGSKI--------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVY 146
+S +KI + G D K L +DSEGRCV + + ++F VY
Sbjct: 138 PSSSSSSSSSSSANKIPYRESANNIGGYTDIEKLPGLHLDSEGRCVCVELADNTVIFAVY 197
Query: 147 GPRADSEDTVRIQ-FKLQFFHVLQKRWEFL--LCQGRRIFVVGDLNIAPAAIDRCDA--- 200
P A+S+ T + F+L F +L +R L L ++I ++GD+NIA ID +
Sbjct: 198 CP-ANSQCTYDGELFRLTFIKLLLQRCYNLVKLYPQKKIVIMGDINIAIDMIDHAETIEL 256
Query: 201 -------GPDFAKNEFRIW----------------------FRSMLVESGGS-------- 223
P F + F + RS+ +
Sbjct: 257 GIKENLLKPSFRGHNFEVLNYENCVSFRTATEARKLLNKYVIRSIWQDLKNEKNPNQKER 316
Query: 224 ------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
+D R R + YT W + T A Q N+G+RID IL + + Q
Sbjct: 317 EKEEPFLYDTTRLVQGRRMKMYTVWNTLTNARQINHGSRIDLILFSDEKMVQ-------- 368
Query: 278 FVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 320
+ NA W M GSDH PV+
Sbjct: 369 ------------------RISNADIWPFLM-----GSDHCPVF 388
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCVQEIKL--QEGQIDL-NVEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+++++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNS-KRGLERLEYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 252
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 125/273 (45%), Gaps = 61/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + ADI+C QETK++ ++ L +GY +++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTYVQETKADILCLQETKVQDGQVSLQL---EGYHDYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F S E L V F GL G++D
Sbjct: 57 YAV-----KKGYSGTAVF--------SKEKPLHV-----FYGL----------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + + + N Y P A R+Q++ F LQK L
Sbjct: 87 ------DQEGRVITLEFENLFVVNCYTPNAKRGLERIDYRLQWEADFKEYLQK-----LD 135
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG F+ E + S L+ +G F D FR
Sbjct: 136 RKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSDQEREAF--SALLNTG--FTDSFRY 189
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+R AY+ W T A + N G R+D+++ +
Sbjct: 190 LYPDREGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 60/285 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MRLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDN 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+ +AY+ W A N G RID+ + + + D + H
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|103487661|ref|YP_617222.1| exodeoxyribonuclease III (xth) [Sphingopyxis alaskensis RB2256]
gi|98977738|gb|ABF53889.1| Exodeoxyribonuclease III [Sphingopyxis alaskensis RB2256]
Length = 256
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 116/272 (42%), Gaps = 51/272 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+N+NG++ R+ + L + L+ D+ C QE K + + + + A GY +
Sbjct: 1 MKIATFNINGIKARLPR---LIEWLEERQPDVACLQELKSSDETMPTKEIEAAGYGFLY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G++GVA + A PV + G G E S+ +E
Sbjct: 57 ------HGQKGFNGVAILAKG---------ADPVEVQRGLAGEAEDEQSRYLEA------ 95
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+ G V + +Y P + + + +KL++ L++R LL
Sbjct: 96 ------DAHGIRVAS---------IYLPNGNPQPGPKFDYKLRWMARLRERARMLLAAEI 140
Query: 181 RIFVVGDLNIAPAAID----RCDAGPDFAKNEFR-IWFRSMLVESGGSFFDVFRSKHPER 235
+ GD N+ P D R A + E R WFR + G + D RS+HP
Sbjct: 141 PTVLAGDYNVIPHDDDVWDPRAMATDALMQPESRDAWFRLL----GDGWTDALRSRHPA- 195
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
+T W GA Q ++G RIDH+L + P L
Sbjct: 196 GHVWTYWDYQAGAWQRDHGFRIDHLLLS-PAL 226
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 138/331 (41%), Gaps = 94/331 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
M+ V++NVNGLR + + LD F+ AD C QE K+ +L +L +GYE+
Sbjct: 1 MRFVSWNVNGLRACIK-----KGFLDYFNEINADFFCLQEIKMSEGQLDLEL---EGYET 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + R GYSG A F + P++ + G G+E+
Sbjct: 53 YYNYAQ-----RKGYSGTAIFTKYT----------PLSVKYGM-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D+EGR + ++ F L Y P + E +R+ +++ + + + L
Sbjct: 85 H--------DNEGRLITLEYEDFFLVTCYTPNSKQE-LLRLDYRMVWEDAF-RNYLLELN 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + V GDLN+A ID R +AG F E S+L++SG F D FR
Sbjct: 135 KTKSVIVCGDLNVAHKEIDLKNPKTNRKNAG--FTDQEREK--MSILLDSG--FTDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 290
+P++ Y+ W + + N G RID+ L + + D Q H
Sbjct: 189 FYPDKENEYSWWSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIHQ------------- 235
Query: 291 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 321
R+ GSDH PVY+
Sbjct: 236 -------------------RILGSDHCPVYL 247
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LN 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R++ E G F D +R +
Sbjct: 136 EKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRTL--EEG--FVDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 116/271 (42%), Gaps = 58/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K +++NVN L+ RV + L L+ D D IC QETKL ++ ++ Y+ FF+
Sbjct: 48 LKFLSWNVNSLK-RVLERKQLVNLVSQEDPDFICLQETKLTEDKVPGAFLLPQ-YKKFFN 105
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C T + GYSG A F ++ P+A + F G+
Sbjct: 106 CCET----KRGYSGTALFSKMA----------PIAVLKDFEGVYSEH------------- 138
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC--- 177
+ GR ++ ++ +F + +VY P + KL+ W+ C
Sbjct: 139 ------NKTGRLIVAEYENFYVASVYVPNSGD--------KLKNLEYRVHSWDPSFCSYI 184
Query: 178 ----QGRRIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 228
+ I ++GDLN+A ID R + F ++E R F L E+ D F
Sbjct: 185 CELQMKKPIVLLGDLNVAHQDIDVYAPERLGSKAGFVQSE-RNNFSKFLEET--KMVDSF 241
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDH 259
R +P R+EAY+ W TG N G RID+
Sbjct: 242 RYLYPHRKEAYSFWDYKTGGRLRNQGWRIDY 272
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 122/269 (45%), Gaps = 54/269 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V + DADI C QE+KL+ +++ D +GY +++
Sbjct: 1 MKLISWNVNGIRACVQK--GFCDFFKEVDADIFCIQESKLQAGQIELDF---EGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P T G+ G+E+
Sbjct: 56 YAE-----KKGYSGTAIFTK-KEPLQVT------------YGM----------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F + VY P + +E + R++++ +F L+K L
Sbjct: 86 ------DKEGRVITLEFEDFYMVTVYTPNSQNELARLSYRMEWEDEFRRFLKK-----LE 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPE 234
+ + + V GDLN+A ID + + F I R S L+E+G F D FR +P+
Sbjct: 135 ETKPVVVCGDLNVAHKEIDLKNPNTNQMNAGFTIEERTKFSELLEAG--FIDTFRYFYPD 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ Y+ W A + N G RID+ L +
Sbjct: 193 AMDMYSWWSYRFKAREKNTGWRIDYFLAS 221
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 62/286 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + +AD+ C QE KL+ +++ DL GY ++++
Sbjct: 1 MKLISWNVNGLRAVMKK--GFMDFFTEVNADVFCLQEIKLQEGQIEMDL---PGYYTYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K PVA + G GLE+
Sbjct: 56 YAH-----KKGYSGTAIFTKQK----------PVAVQYGL-------------GLEE--- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQKRWE 173
+D+EGR + + + + VY P + +R+ ++L F L
Sbjct: 85 -----LDTEGRIITLEFDSYYVITVYTPNS-QHGLLRLDYRLLWEEAILSFVKTLDNHKP 138
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRS 230
LLC GDLN+A ID + + + F RS + +ESG F D FR
Sbjct: 139 VLLC--------GDLNVAHEEIDLKNPKANKKNSGFTPEERSKMTQFLESG--FVDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+PE Y+ W + + N G RID+ L + + + + + H
Sbjct: 189 FYPEEEGHYSWWSYRSNCREKNVGWRIDYFLASQRLVPELQNAKIH 234
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LN 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R++ E G F D +R +
Sbjct: 136 EKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREQFTRTL--EEG--FVDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LN 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R++ E G F D +R +
Sbjct: 136 EKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRTL--EEG--FVDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|379730689|ref|YP_005322885.1| exodeoxyribonuclease III Xth [Saprospira grandis str. Lewin]
gi|378576300|gb|AFC25301.1| exodeoxyribonuclease III Xth [Saprospira grandis str. Lewin]
Length = 257
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 112/264 (42%), Gaps = 46/264 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+++YNVNGLR + + + D DII QE K R+++ + + A GYE +
Sbjct: 1 MKVLSYNVNGLRAAIRK--GFVDWVKENDIDIIGLQEAKALREQVDLEELQAAGYEHIYW 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +VK+ LE G G+E F
Sbjct: 59 HAAE----KKGYSGVVVLSKVKAD-------------------LEVQGM----GIERF-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + D G + L N Y P S +VR + K F + + L +
Sbjct: 90 ------DKEGRVLRLDFGDWTLLNCYFPSGTS-GSVRQEVKYDFLDSIYDWVQELKKERP 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+I + GD NIA ID + + + F R W L E G F D FR HPE +
Sbjct: 143 KILLQGDYNIAHEEIDIHNPKRNHKTSGFLPEERAWMSKWLEE--GGFVDSFRQLHPEEQ 200
Query: 237 EAYTCWPSNTG-AEQFNYGTRIDH 259
+ ++ W + A N G RID+
Sbjct: 201 K-FSWWSMRSKTARANNKGWRIDY 223
>gi|390176534|ref|XP_003736152.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858704|gb|EIM52225.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 675
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 48/266 (18%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
KI ++NV GLR + + G L+ + DI C QETK +L +L GY ++ C
Sbjct: 424 KISSWNVAGLRAWLKKDGLQSLALE--EPDIFCLQETKCSNDQLPEELTHVPGYHPYWLC 481
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
GY+GVA + ++ +P+ E G G E+F
Sbjct: 482 MPG------GYAGVAIYSKI----------MPINVEYGI-------------GNEEF--- 509
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL---QFFHVLQKRWEFLLCQ 178
D GR + ++ F L NVY P + V ++ ++ + FH ++ + L
Sbjct: 510 -----DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEARMRWEKLFHSYVQKLDAL--- 560
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERRE 237
+ + + GD+N++ ID + + F R + E G F D FR +P+++
Sbjct: 561 -KAVVICGDMNVSHNEIDLENPKTNTKNAGFTKEERDKMTELLGLGFVDTFRHLYPDKKG 619
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
AYT W + A N G R+D+ + +
Sbjct: 620 AYTYWTYMSNARARNVGWRLDYCIVS 645
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 42/264 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+G+R + + G L + DADII QETK + +L + V +GY +F
Sbjct: 82 LKISSWNVSGIRAVIKKNGMEYMLKE--DADIIALQETKCDKNKLPEE-VKLNGYHYYFL 138
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ + GY GVA + + K P+ I GL++
Sbjct: 139 ESK-----KPGYCGVALYTKEK----------PI---------------DIKYGLDN--- 165
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ DSEGR + ++ +F L NVY P A + + + +L++ K + L + +
Sbjct: 166 ---VEFDSEGRLITAEYSNFYLVNVYVPNA-GQKLITLPKRLKWNEAF-KAYVKNLDEKK 220
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GD+N+A ID + + F RS + + F D FR+ +P++ AY
Sbjct: 221 PVIICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTFRALYPDKEGAY 280
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
T W A N G R+D+ L +
Sbjct: 281 TFWSYFANARSKNIGWRLDYFLVS 304
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 125/279 (44%), Gaps = 55/279 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + L L + DADIIC QETK+ Q+ + DL +GY +++
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEE-DADIICLQETKI--QDGQVDL-QPEGYHVYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P+ G GLE+
Sbjct: 57 YAV-----KKGYSGTAVFSKQE----------PLQVIYGI-------------GLEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + + + + VY P + RI +++Q+ L + L Q +
Sbjct: 87 ------DQEGRVITLEFENVFVITVYTPNS-RRGLERIDYRMQWEEALLS-YILELDQKK 138
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + GDLN+A ID R +AG F+ E + R +E+G F D FR +P
Sbjct: 139 PVILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--FLEAG--FVDSFRHVYP 192
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
+ AY+ W GA N G RID+ + + Q D
Sbjct: 193 DLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIED 231
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 124/277 (44%), Gaps = 67/277 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNG+R V Q G L + S AD+IC QETK + +++ +V GY ++++
Sbjct: 1 MKLVSWNVNGVRA-VLQKGLLDYIAAS-GADVICLQETKCQPGDVQH-VVWPAGYRAWWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F RV+ PVA G GL D
Sbjct: 58 AAQ-----KKGYSGTAIFSRVE----------PVAVSCGL-------------GLPDH-- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRW--EFL--- 175
D+EGR + + F L NVY P A E VR+ ++ +RW +FL
Sbjct: 88 ------DNEGRVLTAEFADFYLVNVYVPNAQHE-LVRLPYR--------RRWNADFLSYL 132
Query: 176 --LCQGRRIFVVGDLNIAPAAIDRC----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFR 229
L + + + V GD+N+A ID + G NE R F +ML F D FR
Sbjct: 133 RSLEKKKPVVVCGDMNVAHQEIDLARPKENVGNAGFSNEEREDFSTML---RAGFVDTFR 189
Query: 230 --SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 264
K P Y+ W GA N G RID+ L +
Sbjct: 190 EFEKGPGH---YSWWTYRAGARGRNIGWRIDYFLASA 223
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 127/280 (45%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A +D + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE-REKFTCVLEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
P++ AY+ W GA N G R+D+ + + H+ D
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITD 231
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 122/270 (45%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + +S DADI C QETKL+ ++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFESVDADIFCLQETKLQAGQIDLDLPEYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ P++ G
Sbjct: 57 ------AVKKGYSGTAIFTKIE----------PISVRYGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ + D+EGR + + F + VY P + +E R+ +++ F + + L + +
Sbjct: 81 -DIPEHDTEGRVITLEFEKFFMITVYTPNSQAE-LKRLDYRMTFEDAILTYVK-KLDETK 137
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P
Sbjct: 138 PVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTTFL-EAG--FVDSFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ AY+ W A N G RID+ + +
Sbjct: 192 DLEGAYSWWSYRMNARAQNTGWRIDYFVVS 221
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 54/282 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F ADI C QETKL+ ++ +L + Y +
Sbjct: 1 MKLISWNVNGLRACVQ-----KGFLDYFHEMGADIFCVQETKLQEGQIDLNLENYNQYWN 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+ + GYSG A F ++K P++ G +E
Sbjct: 56 Y--------AAKKGYSGTAVFTKIK----------PISVSYGLGEHME------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L NVY P + D R+ ++L++ + + + L
Sbjct: 86 ---------DHEGRAITLEFPSFYLVNVYTPNS-QRDLARLSYRLEWEDNI-RNYLLELD 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPE 234
+ + + + GDLN+A ID + + + F R + L++SG F D FR +P+
Sbjct: 135 KVKPVILCGDLNVAHQEIDLKNYKTNRGNSGFTDEEREKMTRLLDSG--FVDSFRYLYPD 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+ + Y+ W + N G RID+ + + D Q H
Sbjct: 193 KGDVYSWWSYMNKVRERNIGWRIDYFILSKGLSSSIIDSQIH 234
>gi|356498631|ref|XP_003518153.1| PREDICTED: apurinic endonuclease-redox protein-like [Glycine max]
Length = 507
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 125/282 (44%), Gaps = 52/282 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY- 55
+K++++NVNGLR + G S +L D D++C QETKL+ +E+K L+ DGY
Sbjct: 247 VKLLSWNVNGLRALLKLEGFSALQLAQREDFDVLCLQETKLQEKDIEEIKQRLI--DGYA 304
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
SF++C+ + + GYSG A R+K P++ G G+
Sbjct: 305 NSFWTCSVS----KLGYSGTAIISRIK----------PLSVRYGL-------------GI 337
Query: 116 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 175
D DSEGR V + F L Y P + + R+ +++ + +
Sbjct: 338 PDH--------DSEGRLVTAEFDTFYLICGYVPNS-GDGLKRLSYRVTEWDPSLSNYLKE 388
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRS 230
L + + + + GDLN A ID + + F E + + ++ L F D FR
Sbjct: 389 LEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAGFTDEERKSFAKNFLSR---GFVDTFRR 445
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
+HP YT W G +FN G R+D+ L + + HD
Sbjct: 446 QHPGVI-GYTYWGYRHGGRKFNRGWRLDYFLVSESIADKVHD 486
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 58/284 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
+K +++NVNGLR + + LDSF +AD C QETKL+ +++ D+ GY
Sbjct: 4 LKYISWNVNGLRACIK-----KGFLDSFKNLNADCFCLQETKLQPHQIELDI---PGYYQ 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F ++K P++ G
Sbjct: 56 YWNSAI-----KKGYSGTALFTKIK----------PISVSYGMN---------------- 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ + D EGR + + + L Y P + + R+++++++ + K + L
Sbjct: 85 -----IEEHDQEGRLITAEFKNHFLVVCYTPNSQRQ-LARLEYRMKWENDF-KNYLLKLT 137
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + + GDLN+A ID + + F +E + + S L+E+G F D FR +
Sbjct: 138 ESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKF--STLLENG--FTDTFRYLY 193
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
P++++AY+ W + + N G RID+ L + ++ D + H
Sbjct: 194 PDKKDAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIH 237
>gi|167521904|ref|XP_001745290.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776248|gb|EDQ89868.1| predicted protein [Monosiga brevicollis MX1]
Length = 263
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 43/280 (15%)
Query: 1 MKIVTYNVNGLRQRVSQF-GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
+ +V++NVNGLR + +L L+ + + D++ QETKL+ + + GY +
Sbjct: 1 LHVVSWNVNGLRAVLKNHPKALPDLVQAENPDLLFLQETKLQASHVADYANLLPGYTGLW 60
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
SC+R + GYSG A G T + + G++
Sbjct: 61 SCSR----AKKGYSGTA----------------------GATPTSDFRALSVQYGIKSAH 94
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D+ EGR + + + VY P + +D R+ ++L ++V + L
Sbjct: 95 HDQ------EGRTITVELPDLFVIGVYVPNS-GQDLKRLDYRLNEWNVDFLAYIRELEAS 147
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + VVGDLN+A +D +AG K+ + R F L + F D FR +PE
Sbjct: 148 KPVLVVGDLNVAHLDLDIYNAG-HLVKSAGCTPQERTAFTEFLDQG---FTDTFRKLYPE 203
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 274
A+T W + TG Q + G R+D+ +C+ L L+
Sbjct: 204 HTGAFTYWSARTGGRQDSKGLRLDYAVCSNALLEANSPLR 243
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 65/300 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A +D + P F+ E R F +L E+G F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE-REKFTCVL-EAG--FIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ--------SHNFVTCHVN 284
P++ AY+ W GA N G R+D+ + + H+ D + H V H+N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEIMGSDHCPVELHIN 251
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 46/273 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NVNGLR + + G +++ D++C QETK R++++ DL GY +++
Sbjct: 1 MKIYSWNVNGLRAVLKK-GLFMPFIETHQPDVLCLQETKSEREQVEIDLA---GYHEYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T GYSG A F R + P++ GF + +K ++D +
Sbjct: 57 SATTK-----GYSGTAIFSRTE----------PLSVTNGFAKAV----AKKYTLVDDAGR 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL----- 175
D ++EGR + + F + VY P A +D R+ + Q + FL
Sbjct: 98 DS----ETEGRVITAEFEKFFVVTVYTPNA-KDDLSRLPLRSQHWDA-----AFLAHCKA 147
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSK 231
L + + GDLN+A +D + P+ + F R F+S L F D R
Sbjct: 148 LEMKKPVVFCGDLNVAHTELDLANPKPNRGRKGFTDEERQGFQSFL---DAGFVDTLRMF 204
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 264
H + Y+ W + N G RID++L +
Sbjct: 205 H-QGNGHYSWWSHFANSRARNVGWRIDYVLVSA 236
>gi|237749208|ref|ZP_04579688.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
gi|229380570|gb|EEO30661.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
Length = 260
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 116/276 (42%), Gaps = 53/276 (19%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
I + N+NG+R V + ++ +D +C QE K + ++ ++ DGY+ +F C
Sbjct: 4 ITSVNLNGIRSAVKK--GFLDWMNRSGSDFVCLQEIKAQSCDITPEVATPDGYQGYFECA 61
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
+ GYSG + + +P E GF GSK
Sbjct: 62 E-----KKGYSGTGIYTKT----------MPDKIENGF-------GSK------------ 87
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADS---EDTVRIQFKLQFFHVLQKRWEFLLCQG 179
+ D+EGR D F L ++Y P S + +F +F+ L+K L G
Sbjct: 88 --EFDAEGRYFQCDFRDFSLVSLYAPSGSSSPERQEAKFRFMDEFYPYLKK----LKDSG 141
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 235
R + GD NIA ID + + + F R W + E G + DV+R HP+
Sbjct: 142 REFVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLTDVFDELG--WVDVYRLLHPDT 199
Query: 236 R-EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
EAYT W + A N G RID+ + A P + +K
Sbjct: 200 TGEAYTWWSNRGQAYAKNVGWRIDYQI-ATPGIAKK 234
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 65/300 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A +D + P F+ E R F +L E+G F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE-REKFTCVL-EAG--FIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ--------SHNFVTCHVN 284
P++ AY+ W GA N G R+D+ + + H+ D + H V H+N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVMGSDHCPVELHIN 251
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QEGQIDL-NVEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-EEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F V KR L
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNS-KRGLERLDYRMKWEDDFRVYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|262381739|ref|ZP_06074877.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_33B]
gi|262296916|gb|EEY84846.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_33B]
Length = 253
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 114/268 (42%), Gaps = 49/268 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYN NGLR V + L + L D++C QETKL+ + S+ A GY+S+
Sbjct: 1 MKIITYNTNGLRAAVGK--GLPEWLAQEQPDVLCIQETKLQPDQFPSETFEALGYKSYLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHIEYGM-------------GIE---- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
K D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 87 ----KYDNEGRFLRADFGDVSIVSVYHPSGTSGDE-RQDFKMIWLEDFQKYVVELQKSRP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W L F D FR +P++
Sbjct: 142 NLILCGDYNICHEPIDIHDPIRN-AKNSGFLPEEREWMTRFL---SAGFTDTFRFLNPDK 197
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
+E YT W + N G RID+ + +
Sbjct: 198 QE-YTWWSYRFNSRSKNKGWRIDYCMVS 224
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S + DI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NTDIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R + P+A G G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTRKE----------PIAVTYGL-------------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F ++L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTNILEEG---FVDTYRFLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
P++ AY+ W GA N G R+D+ + + H+ D
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|301310211|ref|ZP_07216150.1| exodeoxyribonuclease III [Bacteroides sp. 20_3]
gi|423336452|ref|ZP_17314199.1| exodeoxyribonuclease III (xth) [Parabacteroides distasonis
CL09T03C24]
gi|300831785|gb|EFK62416.1| exodeoxyribonuclease III [Bacteroides sp. 20_3]
gi|409240927|gb|EKN33701.1| exodeoxyribonuclease III (xth) [Parabacteroides distasonis
CL09T03C24]
Length = 284
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 114/268 (42%), Gaps = 49/268 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+TYN NGLR V + L + L D++C QETKL+ + S+ A GY+S+
Sbjct: 32 LKIITYNTNGLRAAVGK--GLPEWLAQEQPDVLCIQETKLQPDQFPSETFEALGYKSYLF 89
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E
Sbjct: 90 SAQ-----KKGYSGVAILTKQE----------PDHIEYGM-------------GIE---- 117
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
K D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 118 ----KYDNEGRFLRADFGDVSIVSVYHPSGTSGDE-RQDFKMLWLEDFQKYVVELQKSRP 172
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W L F D FR +P++
Sbjct: 173 NLILCGDYNICHEPIDIHDPIRN-AKNSGFLPEEREWMTRFL---SAGFTDTFRFLNPDK 228
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
+E YT W + N G RID+ + +
Sbjct: 229 QE-YTWWSYRFNSRSKNKGWRIDYCMVS 255
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 137/336 (40%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-EEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMITVYTPNSKDE-LLRLDYRMVWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L+ESG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLESG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P+ AY+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPDLEHAYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ EGSDH PV + L
Sbjct: 235 ---------------------AQTEGSDHCPVVLFL 249
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 124/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKDGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRSYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSCILEE---GFVDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|390176532|ref|XP_001356149.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388858703|gb|EAL33209.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 648
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 48/266 (18%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
KI ++NV GLR + + G L+ + DI C QETK +L +L GY ++ C
Sbjct: 397 KISSWNVAGLRAWLKKDGLQSLALE--EPDIFCLQETKCSNDQLPEELTHVPGYHPYWLC 454
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
GY+GVA + ++ +P+ E G G E+F
Sbjct: 455 MPG------GYAGVAIYSKI----------MPINVEYGI-------------GNEEF--- 482
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL---QFFHVLQKRWEFLLCQ 178
D GR + ++ F L NVY P + V ++ ++ + FH ++ + L
Sbjct: 483 -----DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEARMRWEKLFHSYVQKLDAL--- 533
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERRE 237
+ + + GD+N++ ID + + F R + E G F D FR +P+++
Sbjct: 534 -KAVVICGDMNVSHNEIDLENPKTNTKNAGFTKEERDKMTELLGLGFVDTFRHLYPDKKG 592
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
AYT W + A N G R+D+ + +
Sbjct: 593 AYTYWTYMSNARARNVGWRLDYCIVS 618
>gi|378821643|ref|ZP_09844523.1| exodeoxyribonuclease III [Sutterella parvirubra YIT 11816]
gi|378599588|gb|EHY32596.1| exodeoxyribonuclease III [Sutterella parvirubra YIT 11816]
Length = 263
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 113/273 (41%), Gaps = 54/273 (19%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
+IVT N NG+R + G L L S DAD++C QE + ++ + GY ++F
Sbjct: 3 RIVTVNANGIRS-AHKKGLLEWFLAS-DADVLCMQEVRAGADDVPAAWAEIPGYHAYFHP 60
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A +CR + P GF G
Sbjct: 61 AE-----KKGYSGCALWCREE----------PREVRTGFGG------------------- 86
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLCQ 178
+ D+EGR V D G I+ + Y P S D + +F QF +++R +
Sbjct: 87 ---EFDAEGRFVEADFGTHIVMSAYFPSGTSGDERQAAKYRFLDQFLDYVERR----RAE 139
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 234
GR I GD+NIA ID + + + F R W +L E + DVFR P
Sbjct: 140 GREIVFCGDVNIAHKEIDLKNWKGNMKNSGFLPEERAWMTKLLSEH--DWRDVFRLLDP- 196
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
R + YT W A N G RID+ + A P L
Sbjct: 197 RPDQYTWWSQRGQARAKNVGWRIDYQI-ATPLL 228
>gi|255024226|ref|ZP_05296212.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-208]
Length = 216
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 120/267 (44%), Gaps = 60/267 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDK 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG F+ E R F + L F D FR
Sbjct: 136 TKPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRID 258
+P+ +AY+ W A N G RID
Sbjct: 190 YPDLTDAYSWWSYRMNARARNTGWRID 216
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMTWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
T++EGSDH PV + L
Sbjct: 235 ---------------------TQIEGSDHCPVVLIL 249
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 123/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL Q+ + DL + + Y
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QDGQIDLNLEEYY----- 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T + + GYSG A F + K P S T GL G+E+
Sbjct: 53 -TYWNYAVKKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F V KR L
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNS-KRGLERLDYRMKWEDDFRVYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 126/271 (46%), Gaps = 58/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
MK +++NVNGLR + FG +++ DAD +C QETK++ +L++DL Y +++
Sbjct: 1 MKFISWNVNGLR---AVFGKGFPEIIQGLDADFVCLQETKMQAGQLEADL---PSYHTYW 54
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+ + GYSG A + R + P++ G G++
Sbjct: 55 NYAE-----KKGYSGTAIYTRHE----------PLSVSYGI-------------GIDHH- 85
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D+EGR + ++ F L VY P + +D R+ +++ + + + L +
Sbjct: 86 -------DTEGRVITLEYTDFYLVTVYVPNS-QDDLRRLGYRMTWEDDF-RAYLVELDKK 136
Query: 180 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + V GDLN+A ID R +AG +E R F+ +L F D FR H
Sbjct: 137 KPVIVCGDLNVAHQEIDLKNPKSNRRNAG---FTDEERGKFQELL---DAGFIDTFRYFH 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++R+ Y+ W A + N G RID+ + +
Sbjct: 191 PDQRDIYSWWSYRFKARERNSGWRIDYFVTS 221
>gi|395645806|ref|ZP_10433666.1| exodeoxyribonuclease III [Methanofollis liminatans DSM 4140]
gi|395442546|gb|EJG07303.1| exodeoxyribonuclease III [Methanofollis liminatans DSM 4140]
Length = 253
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 114/266 (42%), Gaps = 46/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNG+R V + G + D DI+C QETK + ++ ++ GY ++FS
Sbjct: 1 MRLLSWNVNGIRS-VHKKGFCKWFGDE-SPDILCIQETKAQEDQIPPEIRSPPGYHAYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA F R + P++ F G
Sbjct: 59 SAM-----RKGYSGVALFSREE----------PISITRDFDG------------------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ EGR +I ++ F LF++Y P S R+ +K+ F+ + +GR
Sbjct: 86 ----RFGDEGRIIIAEYQAFTLFDIYFPNGKSSPE-RLAYKMAFYDAFLSSVRGMNEEGR 140
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERRE 237
+ V GD+N A AID + + F R+ L +ESG D FR E
Sbjct: 141 SVVVCGDVNTAHQAIDLARPKENVKISGFLPEERAALDLWIESG--LVDTFRFFTAEGGH 198
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
YT W T A N G RID+ +
Sbjct: 199 -YTYWDLKTRARDRNVGWRIDYFFVS 223
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 124/277 (44%), Gaps = 68/277 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF +AD+ C QETK++ + DL GYE
Sbjct: 1 MRFVSWNVNGLR------AALKKGFMESFKELNADVFCLQETKMQEGQAILDL---PGYE 51
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F RVK P++ G G+E
Sbjct: 52 QYFYSAE-----KKGYSGTAIFTRVK----------PLSVSYGI-------------GIE 83
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
+ D+EGR + + L VY P A R+ +++ + + FLL
Sbjct: 84 EH--------DNEGRVITMELPDVYLVTVYTPNA-KRALERLDYRMAWEDSFRA---FLL 131
Query: 177 -CQGRRIFVV-GDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227
+ ++ VV GDLN+A ID R +AG +E R F +L F D
Sbjct: 132 DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 264
FR+ +P+R AYT W A + N G RID+ L +
Sbjct: 186 FRALYPDRTGAYTWWSYLRHARETNAGWRIDYFLVSA 222
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRSYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEE-REKFSCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|197285354|ref|YP_002151226.1| exodeoxyribonuclease III [Proteus mirabilis HI4320]
gi|425068311|ref|ZP_18471427.1| exodeoxyribonuclease III [Proteus mirabilis WGLW6]
gi|425072295|ref|ZP_18475401.1| exodeoxyribonuclease III [Proteus mirabilis WGLW4]
gi|194682841|emb|CAR43141.1| exodeoxyribonuclease III [Proteus mirabilis HI4320]
gi|404597510|gb|EKA98007.1| exodeoxyribonuclease III [Proteus mirabilis WGLW4]
gi|404600293|gb|EKB00739.1| exodeoxyribonuclease III [Proteus mirabilis WGLW6]
Length = 268
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 117/281 (41%), Gaps = 58/281 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++N+NGLR R Q L +++ D+I QETK+ + V A GY F+
Sbjct: 1 MKFVSFNINGLRARPHQ---LEAIVEKHQPDVIGLQETKVHDDMFPLETVSALGYHVFY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK-IMEGLEDFS 119
G+ G+ GVA + K PVA +GF G E + + IM +E
Sbjct: 57 ------HGQKGHYGVALLTKAK----------PVAVRKGFPGDGEEAQRRMIMADIE--- 97
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQ 178
T G + N Y P+ +S D + K +F+ LQ+ L
Sbjct: 98 ---------------TPAGLLTVMNGYFPQGESRDHETKFPAKAKFYADLQQYLTTSLTP 142
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR----SMLVES--------GGSFFD 226
+ ++GDLNI+P D +N + W + S L E G D
Sbjct: 143 SSPVLIMGDLNISP-----TDKDIGIGENNMKRWLKMGKCSFLPEEREWLATLMGWGLTD 197
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
+R++HPE + ++ + + N G RID +L A CL
Sbjct: 198 TYRAQHPEVEDQFSWFDYRSKGFDDNRGLRID-LLLASRCL 237
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 123/274 (44%), Gaps = 64/274 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K +++NVNGLR + + +AD C QETK++ +L + +GY S+++
Sbjct: 2 LKFISWNVNGLRACYDK--GFVDVFHRLEADFFCLQETKMQEGQLDAKF---EGYHSYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +VK P++ G G+E+
Sbjct: 57 YAE-----KKGYSGTAIFSKVK----------PLSVTYGL-------------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F L VY P + E+ R+ +++++ F K+ L
Sbjct: 87 ------DHEGRVITLELESFYLITVYTPNS-QEELRRLDYRMKWEDDFRAYLKK----LE 135
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + + V GDLN+A ID R +AG D + +F + L+ESG F D FR
Sbjct: 136 EKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERTKF-----TTLLESG--FTDTFR 188
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE+ Y+ W A + N G RID+ L +
Sbjct: 189 YFYPEQEGIYSWWSYRFKAREKNSGWRIDYFLTS 222
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 127/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L + L++ +ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFL-EYLEASNADIFCLQEIKLQSGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F K+ L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKQ----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R ++E G F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FVDTYRHLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 121/269 (44%), Gaps = 62/269 (23%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYESF 58
K++++NVNGLR ++ + LD F DADI C QE+K++ +++ +L DGY +
Sbjct: 3 KLISWNVNGLRACIN-----KGFLDYFKKADADIFCIQESKVQPGQIELEL---DGYHQY 54
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ R GYSG A F R+K P+ + G G+++
Sbjct: 55 WNYAE-----RKGYSGTAVFTRIK----------PLCVQNGI-------------GIDEH 86
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
D EGR + + ++ L NVY P A E R+ +++++ + + L
Sbjct: 87 --------DREGRVITLEFDNYYLVNVYTPNAKKE-LERLDYRMKWEDDF-RNYLVGLKA 136
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + V GD+N+A ID R AG +E R F +L F D FR
Sbjct: 137 KKPVIVCGDMNVAHKEIDLKNPESNRRSAG---FTDEERAKFTELL---NAGFIDTFRFF 190
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHI 260
+P++ AYT W A N G RID+
Sbjct: 191 YPDKTGAYTWWSYMFNARARNAGWRIDYF 219
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 122/272 (44%), Gaps = 61/272 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F +AD+ C QETKL QE + DL + +GY
Sbjct: 1 MKLISWNVNGIRACVR-----KGFLDYFQEVNADVFCIQETKL--QEGQIDLQL-EGYYQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S V+ V E
Sbjct: 53 YWNYAV-----KKGYSGTAVFTKQK-PLS---VSYGVGKES------------------- 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEF 174
+ EGR + + + NVY P + D R++ +LQ+ V K+
Sbjct: 85 ---------EDEGRIITLEFEQCYVVNVYTPNS-KRDLARLEERLQWEDDLLVYLKK--- 131
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSK 231
L + + + GDLN+A A ID + P+ + F I R + L+ SG F D FR
Sbjct: 132 -LNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYL 188
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P + AYT W + N G RID+ + +
Sbjct: 189 YPNQEGAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRSYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEE-REKFSCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|233305|gb|AAB19427.1| Rrp1=recombination repair protein 1 [Drosophila, Peptide, 253 aa]
Length = 253
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 117/267 (43%), Gaps = 48/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 1 LKICSWNVAGLRAWLKKDGL--QLIDLEEPDIFCLQETKCANDQLPEEVTRIPGYHPYWL 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C GY+GVA + ++ +P+ E G G E+F
Sbjct: 59 CMPG------GYAGVAIYSKI----------MPIHVEYGI-------------GNEEF-- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D GR + ++ F L NVY P + V ++ ++++ F K+ + L
Sbjct: 88 ------DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDAL-- 138
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERR 236
+ + + GD+N++ ID + + F R + E G F D FR +P+R+
Sbjct: 139 --KPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRK 196
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
AYT W A N G R+D+ L +
Sbjct: 197 GAYTFWTYMANARARNVGWRLDYCLVS 223
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRSYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 43/264 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI T+NV+G+R + + G L+ DADII QETK +++ D V GY +F
Sbjct: 140 IKICTWNVSGIRAVLKKNGMT--YLEREDADIIALQETKCETKKI-PDEVKLKGYTRYF- 195
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GY G+A + + K P I GL++
Sbjct: 196 ----LDSKKAGYCGMALYSK-KEPID------------------------ISMGLDE--- 223
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ D EGR + ++ HF L NVY P A ++ V + +L++ +K + L + +
Sbjct: 224 ----EFDDEGRLITAEYEHFYLVNVYVPNAGNK-LVTLPKRLKWNEAFKKHIQD-LDKKK 277
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GD+N+A ID + + F R + + F D FR +P++ +AY
Sbjct: 278 PVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFLQAGFVDTFRLLYPDKTDAY 337
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
T W A N G R+D+ + +
Sbjct: 338 TFWAYFNNARSKNIGWRLDYYIVS 361
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL Q+ + DL +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QDGQIDL-NPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KKPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R ++E G F D +R +
Sbjct: 136 EKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 42/264 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+G+R + + G + + DADI+ QETK + +L ++ + GY +F
Sbjct: 84 LKISSWNVSGIRALIKKSG--MEYIMKEDADIVALQETKCDKNKLPEEVKLK-GYHHYF- 139
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GY GVA + + K P+ + G L+ S
Sbjct: 140 ----LDSKKAGYCGVALYTKQK----------PIDIQYG----LKNS------------- 168
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ D EGR + ++ +F NVY P A + V + +LQ+ K + L + +
Sbjct: 169 ----EFDDEGRLITAEYPNFYFLNVYVPNA-GQKLVTLPKRLQWNEAF-KSYVKQLDEKK 222
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GD+N+A ID + + F R + + F D FRS +P++ AY
Sbjct: 223 PVIICGDMNVAHQEIDLTNPKTNTKNAGFTKEEREGMTDFLAAGFVDTFRSLYPDKTGAY 282
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
T W A N G R+D+ L +
Sbjct: 283 TFWSYFANARSKNIGWRLDYFLVS 306
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMTWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FVDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
T++EGSDH PV + L
Sbjct: 235 ---------------------TQIEGSDHCPVVLIL 249
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 121/264 (45%), Gaps = 42/264 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+G+R + + G L + DADII QETK + +L + V +GY +F
Sbjct: 105 LKISSWNVSGIRAVIKKNGMEYMLKE--DADIIALQETKCDKNKLPEE-VKLNGYHYYFL 161
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ + GY GVA + + K P+ I GL++
Sbjct: 162 ESK-----KPGYCGVALYTKEK----------PI---------------DIKYGLDN--- 188
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ DSEGR + ++ +F L NVY P A + + + +L++ K + L + +
Sbjct: 189 ---VEFDSEGRLITAEYSNFYLINVYVPNA-GQKLITLPKRLKWNEAF-KAYVKNLDEKK 243
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GD+N+A ID + + F RS + + F D FR+ +P + AY
Sbjct: 244 PVIICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTFRALYPNKEGAY 303
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
T W A N G R+D+ L +
Sbjct: 304 TFWSYFANARSKNIGWRLDYFLVS 327
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L + L+ +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFL-EYLEKSNADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNS-KRGLERVDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R ++E G F D +R +
Sbjct: 136 EKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FVDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|224827230|ref|ZP_03700324.1| exodeoxyribonuclease III Xth [Pseudogulbenkiania ferrooxidans 2002]
gi|224600519|gb|EEG06708.1| exodeoxyribonuclease III Xth [Pseudogulbenkiania ferrooxidans 2002]
Length = 258
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 106/263 (40%), Gaps = 46/263 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++IV+ N+NG+R + L AD++C QE K + +L + DG +F
Sbjct: 2 LRIVSANLNGVRSADKK--GFFDWLAGSQADLVCVQELKAQPGDLSPRMQAPDGLTGYFH 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV + R + P A EG
Sbjct: 60 CAE-----KKGYSGVGIYSRHE----------PDAVVEGLG------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ ID+EGR + D G + ++Y P S D R Q K F V L GR
Sbjct: 86 --IGWIDAEGRYLQLDFGELSVVSLYLPSGSSSDE-RQQVKFDFLDVFMPHLNELRAAGR 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD NIA ID + + + F R W +L E G + DV+R +PE
Sbjct: 143 DIVICGDWNIAHNEIDLKNWKGNLKNSGFLPEERAWMGELLGE--GGWHDVWRRLYPE-V 199
Query: 237 EAYTCWPSNTGAEQFNYGTRIDH 259
YT W + A + G RID+
Sbjct: 200 PGYTWWSNRGQAYAKDVGWRIDY 222
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVITKGGFLEYLEES-NADIFCLQEIKLQSGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F K+ L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKQ----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R ++E G F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FVDTYRHLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 123/280 (43%), Gaps = 63/280 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R +++ + DADI C QETK ++ ++K +L GY +++
Sbjct: 1 MKFISWNVNGIRACITK--GFEERFHELDADIFCLQETKCQQGQVKLEL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + P S+ A + EE
Sbjct: 56 YA-----NRRGYSGTAIFTK-REPLSA---AYGIGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + + VY P + SE R++++ F L K L
Sbjct: 86 ------DKEGRVITLEFDEYYFVTVYTPNSQSELRRLEYRMKWEEDFLAYLLK-----LQ 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + GDLN+A ID R +AG F E + R++ ESG F D FR
Sbjct: 135 EKKPVICCGDLNVAHQEIDLKNPKTNRKNAG--FTDEERACFTRAL--ESG--FIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+P++ Y+ W A + N G RID+ L + P L +K
Sbjct: 189 FYPDKEGVYSWWSYRFRAREKNAGWRIDYFLVS-PSLKEK 227
>gi|426256952|ref|XP_004022100.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2
[Ovis aries]
Length = 343
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 41/205 (20%)
Query: 162 LQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML-- 217
++F+ +LQ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 1 MRFYRLLQIRAEALLAAGSHVIIMGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSN 60
Query: 218 --VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
ESG G F D +R HP+++ A+TCW + +GA NYG+R+D++L
Sbjct: 61 LGCESGSHMGPFIDSYRCFHPKQKRAFTCWSTVSGARHLNYGSRLDYVL----------- 109
Query: 273 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 332
+ ++ID + + + GSDH PV L V +P
Sbjct: 110 -----------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVPAK 148
Query: 333 STPSLASRYLPIIRGVQQTLVSVLM 357
P L + +LP G Q ++ L+
Sbjct: 149 QCPPLCTCFLPEFAGTQLKILRFLV 173
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 289 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 340
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 123/272 (45%), Gaps = 61/272 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F AD+ C QETKL QE + DL + +GY
Sbjct: 1 MKLISWNVNGIRACVR-----KGFLDYFQEVTADVFCIQETKL--QEGQIDLQL-EGYYQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S +
Sbjct: 53 YWNYAV-----KKGYSGTAVFTKQK-PLSVS----------------------------- 77
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEF 174
F D+ +++ EGR + + + NVY P + D R++ +LQ+ V K+
Sbjct: 78 FGVDK--ELEDEGRIITLEFEQCYVVNVYTPNS-KRDLARLEERLQWEDDLLVYLKK--- 131
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSK 231
L + + + GDLN+A A ID + P+ + F I R + L+ SG F D FR
Sbjct: 132 -LNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYL 188
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P + AYT W + N G RID+ + +
Sbjct: 189 YPNQEGAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRSYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFVDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|218961468|ref|YP_001741243.1| Exonuclease III [Candidatus Cloacamonas acidaminovorans]
gi|167730125|emb|CAO81037.1| Exonuclease III [Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 256
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 136/331 (41%), Gaps = 85/331 (25%)
Query: 1 MKIV--TYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
MK++ ++NVNGLR +++ +++ DI+ QETKL+ ++ +L + Y +
Sbjct: 1 MKLLLWSWNVNGLRAALNK--GFIEIIQKEQPDILGIQETKLQEHQIPEELNTLNEYLIY 58
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
+S + R GYSG F ++ LP++ GF G +F
Sbjct: 59 WSHSL-----RKGYSGTGLFTKL----------LPLSFSTGF-------------GNPEF 90
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
D+EGR I ++ FI FN+Y P +D R+ +KL+F+ + E
Sbjct: 91 --------DNEGRINIAEYTEFIFFNIYFPNGQKDDE-RLNYKLRFYDRCLEVMEEKRTS 141
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR--SKH 232
G+ I V GD N A ID + + + F R W + E G + D FR K
Sbjct: 142 GKIILVGGDFNTAHHPIDLANPKENEKTSGFLPIERAWL-DKIAEMG--WIDTFRYFDKS 198
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 292
PE+ YT W T A N G R+D+ + H+
Sbjct: 199 PEQ---YTWWSYRTKARPRNVGWRLDYFWVNKEGIE-------------HIK-------- 234
Query: 293 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
K G+ +EGSDH PV++ L
Sbjct: 235 -----------KAGIRQDIEGSDHCPVFVEL 254
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 124/274 (45%), Gaps = 64/274 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K +++NVNGLR + + +AD C QETK++ +L + +GY S+++
Sbjct: 2 LKFISWNVNGLRACYDK--GFVDVFHRLEADFFCLQETKMQEGQLDAKF---EGYHSYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +VK P S T GL G+E+
Sbjct: 57 YAE-----KKGYSGTAIFSKVK-PLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F L VY P + E+ R+ +++++ F K+ L
Sbjct: 87 ------DHEGRVITLELESFYLITVYTPNS-QEELRRLDYRMKWEDDFRAYLKK----LE 135
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + + V GDLN+A ID R +AG D + +F + L+ESG F D FR
Sbjct: 136 EKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKF-----TTLLESG--FTDTFR 188
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE+ Y+ W A + N G RID+ L +
Sbjct: 189 YFYPEQEGIYSWWSYRFKAREKNSGWRIDYFLTS 222
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 133/285 (46%), Gaps = 62/285 (21%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V++ G L ++ DADI C QE+KL QE + DL + +GY+ +++
Sbjct: 3 KLISWNVNGLRACVNK-GFLEYFKEA-DADIFCIQESKL--QEGQIDLKL-EGYKDYWNY 57
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F + + P++ + G G+ E
Sbjct: 58 AE-----KKGYSGTAVFTKEE----------PISVKNG-IGISEH--------------- 86
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQG 179
D+EGR + + F L NVY P + + R+ +++ + V +K +L L +
Sbjct: 87 -----DTEGRVITLEFKEFYLVNVYTPNS-KQGLERLDYRMVWEDVFRK---YLKELEEK 137
Query: 180 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID R +AG D +N+ S L+E+G F D +R
Sbjct: 138 KPVIICGDLNVAHEDIDLKNPKANRKNAGFTDEERNKI-----SELLEAG--FIDTYRYF 190
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P Y+ W A N G RID+ L + + D + H
Sbjct: 191 YPNTEGVYSWWSYRFNARGNNAGWRIDYFLASESLKDKLVDAKIH 235
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 126/274 (45%), Gaps = 64/274 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR + ++ + DAD C QETK++ +L + +GY S+++
Sbjct: 1 MKFISWNVNGLRACCEK--GFKESFAALDADFFCLQETKMQEGQLDLEF---EGYRSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R +P + T GL GLE+
Sbjct: 56 YAE-----KKGYSGTAIFSR-HAPLNVT------------YGL----------GLEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLLCQG 179
D EGR + + F L VY P +S+D + R+ +++Q+ + +LL
Sbjct: 86 ------DKEGRVITLEMPDFFLVTVYTP--NSQDGLKRLDYRMQWEEAFRA---YLLQLD 134
Query: 180 RR--IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
R + V GDLN+A ID R +AG D + +F I L++SG F D FR
Sbjct: 135 TRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGI-----LLDSG--FTDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+R Y+ W A + N G RID+ L +
Sbjct: 188 FFYPDREGIYSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P+ G G+E+
Sbjct: 53 YWNYAE-----KKGYSGTAIFTKQE----------PLTVSYGL-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 85 H--------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMTWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
T++EGSDH PV + L
Sbjct: 235 ---------------------TQIEGSDHCPVVLIL 249
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 129/288 (44%), Gaps = 66/288 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + ++ DADI C QETK +++ DL GY +++
Sbjct: 1 MKLISWNVNGIRACLKK--GFMEYFEAQDADIFCLQETKCSAGQVELDL---KGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S V+ + EE
Sbjct: 56 YAV-----KKGYSGTAIFTK-KEPIS---VSYGLGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLL 176
D EGR + + F + VY P + +E R+ +++ +F L K L
Sbjct: 86 ------DQEGRVITLEFEDFYMVTVYTPNSKNE-LERLDYRMVWEDEFRSYLAK-----L 133
Query: 177 CQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVF 228
+ + + V GD+N+A ID R +AG D +++F + L+++G F D F
Sbjct: 134 NEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERSKF-----TELLKAG--FTDSF 186
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
R +P+R AY+ W A + N G RID+ + + Q + + H
Sbjct: 187 RYLYPDRLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIH 234
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 124/287 (43%), Gaps = 64/287 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + ++ DADI C QETK +++ DL GY +++
Sbjct: 1 MKLISWNVNGIRACLKK--GFMEYFEAQDADIFCLQETKCSAGQVELDL---KGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S V+ + EE
Sbjct: 56 YAV-----KKGYSGTAIFTK-KEPIS---VSYGLGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLL 176
D EGR + + F + VY P + +E R+ +++ +F L K L
Sbjct: 86 ------DQEGRVITLEFEDFYMVTVYTPNSKNE-LERLDYRMIWEDEFRSYLAK-----L 133
Query: 177 CQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + + V GD+N+A ID R +AG +E R F +L F D FR
Sbjct: 134 NEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAG---FTDEERTKFTELL---KAGFTDSFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
+P+R AY+ W A + N G RID+ + + Q + + H
Sbjct: 188 YLYPDRLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIH 234
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 120/283 (42%), Gaps = 56/283 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DADI C QETKL+ ++ DL GY +++
Sbjct: 1 MKLISWNVNGLRAAVKH--GFLDVFNELDADIFCVQETKLQEGQIDLDL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + PVA G G+ +F
Sbjct: 56 YAE-----KKGYSGTAVFTKRE----------PVAVSYGL-------------GIPEF-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + ++ F L Y P + E R+ +++ + F K+ L
Sbjct: 86 ------DQEGRVITLEYEEFFLVTCYTPNSQPE-LRRLDYRMNWDDAFRAYVKQ----LA 134
Query: 178 QGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + GDLN+A ID R + +E R F +L +SG F D +R +P
Sbjct: 135 DTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTELL-QSG--FTDTYRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
++ Y+ W A N G RID+ + + Q D + H
Sbjct: 192 DKEGVYSWWSYRFNARANNAGWRIDYFVTSQALDKQLADAKIH 234
>gi|91774073|ref|YP_566765.1| exodeoxyribonuclease III [Methanococcoides burtonii DSM 6242]
gi|91713088|gb|ABE53015.1| Exodeoxyribonuclease III [Methanococcoides burtonii DSM 6242]
Length = 251
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 106/260 (40%), Gaps = 47/260 (18%)
Query: 8 VNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDK 67
+NGLR + + + +++ DI+C QETK +L +L GY +F
Sbjct: 1 MNGLRSMLKK--GFVEWMEATQPDILCLQETKATETQLPKELRHIHGYVPYFFSAE---- 54
Query: 68 GRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKID 127
R GYSGV + +V PV + G + + D
Sbjct: 55 -RKGYSGVGIYTKVP----------PVEVKYGLG---------------------VPRFD 82
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGD 187
EGR +I + F LFN+Y P + D R+++K+ F++ + + + G+ + + GD
Sbjct: 83 KEGRTLIVEFEDFALFNIYFPNGKASDE-RLEYKMDFYNAFMEVADSMKDAGKNVIICGD 141
Query: 188 LNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWP 243
+N A ID + + F R W + L G + D R PE YT W
Sbjct: 142 VNTAHKEIDLARPKQNERSSGFLPQEREWIDTFL---GHGYLDTLRMFEPESGN-YTWWD 197
Query: 244 SNTGAEQFNYGTRIDHILCA 263
T A N G RID+ +
Sbjct: 198 MKTRARDRNVGWRIDYFFAS 217
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 125/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL Q+ + DL +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKL--QDGQIDL-NPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R ++E G F D +R +
Sbjct: 136 EKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|227355788|ref|ZP_03840181.1| exodeoxyribonuclease III [Proteus mirabilis ATCC 29906]
gi|227164107|gb|EEI49004.1| exodeoxyribonuclease III [Proteus mirabilis ATCC 29906]
Length = 268
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 116/281 (41%), Gaps = 58/281 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++N+NGLR R Q L +++ D+I QETK+ + V A GY F+
Sbjct: 1 MKFVSFNINGLRARPHQ---LEAIVEKHQPDVIGLQETKVHDDMFPLETVSALGYHVFY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK-IMEGLEDFS 119
G+ G+ GVA + K PVA +GF G E + + IM +E
Sbjct: 57 ------HGQKGHYGVALLTKAK----------PVAVRKGFPGDGEEAQRRMIMADIE--- 97
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQ 178
T G + N Y P+ +S D + K +F+ LQ+ L
Sbjct: 98 ---------------TPAGLLTVMNGYFPQGESRDHETKFPAKAKFYADLQQYLTTSLTP 142
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR----SMLVES--------GGSFFD 226
+ ++GDLNI+P D +N + W + S L E G D
Sbjct: 143 SSPVLIMGDLNISP-----TDKDIGIGENNMKRWLKMGKCSFLPEEREWLATLMGWGLTD 197
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
+R++HPE ++ + + N G RID +L A CL
Sbjct: 198 TYRAQHPEVENQFSWFDYRSKGFDDNRGLRID-LLLASRCL 237
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 123/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL Q+ + DL + + Y
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QDGQIDLNLEEYY----- 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T + + GYSG A F + K P S T GL G+E+
Sbjct: 53 -TYWNYAVKKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F V KR L
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNS-KRGLERLDYRMKWEDDFRVYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYRMGARVKNIGWRLDYFVVS 222
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 122/271 (45%), Gaps = 60/271 (22%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 4 KLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY--- 58
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 59 -----AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH--------------- 87
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQG 179
D+EGR + + F + VY P + +E R+ +++ F + E++ L +
Sbjct: 88 -----DTEGRVITLEFEDFYMVTVYTPNSQAE-LKRLDYRMTFEDAIL---EYVKNLDKT 138
Query: 180 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID R +AG F+ E R F + L F D FR +
Sbjct: 139 KPVVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFY 192
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P+ +AY+ W A N G RID+ + +
Sbjct: 193 PDLTDAYSWWSYRMNARARNTGWRIDYFVVS 223
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 124/273 (45%), Gaps = 61/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + ADI+C QETK++ ++ L +GY +++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTYVQETKADILCLQETKVQDGQVSLQL---EGYHDYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F S E L V F GL G++D
Sbjct: 57 YAV-----KKGYSGTAVF--------SKEKPLHV-----FYGL----------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + + + N Y P A R+Q++ F LQK L
Sbjct: 87 ------DQEGRVITLEFENLFVVNCYTPNAKRGLERIDYRLQWEADFKEYLQK-----LD 135
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG F+ E + S L+ +G F D FR
Sbjct: 136 RKKPVILCGDLNVAHREIDLKNPKANRKNAG--FSDQEREAF--SALLNTG--FTDSFRY 189
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+R Y+ W T A + N G R+D+++ +
Sbjct: 190 LYPDREGGYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 60/272 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + R+ + DAD C QETK+ QE + DL +GY S+++
Sbjct: 1 MKLISWNVNGLRACCDK--GFREAFQTLDADFFCLQETKM--QEGQLDLSF-EGYTSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +K + + + V
Sbjct: 56 YAE-----KKGYSGTAIFTHLKPLNVTYGLGIDVH------------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLLCQG 179
D EGR + + +F L VY P +S+D + R+ +++ + + + L +
Sbjct: 86 ------DHEGRVITLEMDNFYLVTVYTP--NSQDGLKRLDYRMTWEDDF-RNYLLELDKK 136
Query: 180 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + V GDLN+A ID R +AG D + +F+I L+++G F D FR
Sbjct: 137 KPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQI-----LLDAG--FIDTFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE+ Y+ W A + N G RID+ L +
Sbjct: 190 YPEQTGIYSWWSYRFKAREKNAGWRIDYFLAS 221
>gi|261821541|ref|YP_003259647.1| exonuclease III [Pectobacterium wasabiae WPP163]
gi|261605554|gb|ACX88040.1| exodeoxyribonuclease III [Pectobacterium wasabiae WPP163]
Length = 272
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 118/272 (43%), Gaps = 47/272 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR R Q L +++ D+I QETK+ + V GY ++
Sbjct: 5 MKVVSFNINGLRARPHQ---LAAIIEQHQPDVIGLQETKVHDDMFPLEDVSQYGYHVYY- 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA C+ + P+A GF + + +I+ + DF+
Sbjct: 61 ------HGQKGHYGVALLCKEQ----------PIAVRRGFPTDEDDAQRRII--MADFA- 101
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
T+HG + N Y P+ +S D V+ K +F+ LQ E
Sbjct: 102 --------------TEHGTLTVVNGYFPQGESRDHPVKFPAKTRFYQDLQTYLEQHHSAT 147
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--------SGGSFFDVFRSK 231
+ + V+GD+NI+P +D G + K R S L E G D FR+
Sbjct: 148 QPLIVMGDVNISPTDLD-IGIGEENRKRWLRTGKCSFLPEEREWMARLQGWGLIDTFRAA 206
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE + ++ + + N G RID IL +
Sbjct: 207 NPESNDRFSWFDYRSAGFDDNRGLRIDLILAS 238
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A +D + P F+ E R F +L E+G F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE-REKFTCVL-EAG--FIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
P++ AY+ W GA N G R+D+ + + H+ D
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLEHKIID 231
>gi|374375042|ref|ZP_09632700.1| exodeoxyribonuclease III Xth [Niabella soli DSM 19437]
gi|373231882|gb|EHP51677.1| exodeoxyribonuclease III Xth [Niabella soli DSM 19437]
Length = 265
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 130/334 (38%), Gaps = 91/334 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I++YNVNG+R + + L + ADIIC QETK + + +L + GY ++
Sbjct: 10 MRIISYNVNGIRAAIKK--GFIDWLKTDPADIICLQETKASVENVDKELFESLGYTGYWF 67
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGV+ F ++ ++ +G ++
Sbjct: 68 SAQ-----KKGYSGVSVFTKIPP-----------------DNIIYGTGHQVS-------- 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQKRWEFLL 176
D EGR + D G L N Y P S + VR FK +F+ LQ+ L
Sbjct: 98 ------DEEGRVIQLDFGAVRLINAYFPSGTSGE-VRQGFKYIWLDEFYTYLQE----LK 146
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRS 230
+ R+ + GD NIA AID D P KN E R W L F D FR
Sbjct: 147 NKHPRLVLCGDYNIAHEAIDIHD--PKGNKNSSGFLPEEREWMTKFL---KNGFNDTFRL 201
Query: 231 KHPERREAYTCWPSNTGAEQF-NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 289
HPE Y+ W + + N G RID+I ++ V E DI
Sbjct: 202 LHPEEAHRYSWWSQRFPSVRLNNKGWRIDYITVTDALKNK-------------VVEADIY 248
Query: 290 IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
D K SDH PVY+ L
Sbjct: 249 PDVKH-------------------SDHCPVYLKL 263
>gi|383647890|ref|ZP_09958296.1| exodeoxyribonuclease III [Sphingomonas elodea ATCC 31461]
Length = 256
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 129/327 (39%), Gaps = 76/327 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV+YNVNG++ R+ + L + L DI+C QE K L + GY + +
Sbjct: 1 MKIVSYNVNGIKARIDR---LVEYLTEQQPDIVCLQELKSSDDTLPVAAIETAGYGAVW- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G++GVA + + P V + G G E
Sbjct: 57 ------HGQKGFNGVAILAKGQQP---------VERQRGLAGDPE--------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+ R + + G I+ +Y P + + + +KL++ L R LL + R
Sbjct: 87 ------DAHSRYIEAEVGDLIIGGLYLPNGNPQPGPKFDYKLRWMDRLYDRAAQLLAEER 140
Query: 181 RIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
+ GD N+ P D R A + E R +R +L + + D R++ P +
Sbjct: 141 PAILAGDFNVIPNDDDTFSIRAMAEDALMQPESRERYRKLLAQ---GWTDALRTRFP-KG 196
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+T W GA Q + G RIDH+L + + F V++ DY+
Sbjct: 197 GVWTFWDYQAGAWQRDAGFRIDHLLLSPQA--------ADRFTGAGVDK-----DYR--- 240
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL 323
R + SDHAP ++ L
Sbjct: 241 ------------GREKASDHAPTWVTL 255
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 125/284 (44%), Gaps = 71/284 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK V++NVNG+R V + LD F DADI C QE+K++ +L+ DL GY
Sbjct: 3 MKFVSWNVNGIRACVQ-----KGFLDFFTEADADIFCIQESKMQEGQLELDL---PGYHQ 54
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S V + EE
Sbjct: 55 YWNYAV-----KKGYSGTAVFTK-KEPLS---VTYGIGIEEH------------------ 87
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEF 174
D EGR + + F VY P + +E R+ +++++ F + K+ E
Sbjct: 88 ---------DQEGRVITCEFEDFYFVTVYTPNSQNE-LARLDYRMRWEDDFRMYLKKLE- 136
Query: 175 LLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFD 226
+ + + V GD+N+A ID R +AG D + +F + L+++G F D
Sbjct: 137 ---EKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGKF-----TELLDAG--FID 186
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
FR +P+R Y+ W A N G RID+ C L ++
Sbjct: 187 TFRYFYPDREGIYSWWSYRFSARAKNAGWRIDY-FCVSESLKER 229
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 44/264 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K +++NVNGLR + + ++ DAD C QETKL+ +++ +L GY +++
Sbjct: 4 LKYISWNVNGLRACIKK--GFMDAFNALDADCFCLQETKLQPHQIELEL---PGYHQYWN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P S T GL G+E+
Sbjct: 59 SAV-----KKGYSGTAIFTK-EEPLSVT------------YGL----------GIEEH-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + D G L Y P + R+ +++ + + K + L +
Sbjct: 89 ------DQEGRLITADFGSHYLLCCYTPNS-QRGLARLSYRMTWEKAM-KEYMTKLAAEK 140
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID + + F R + + F D FR HP+ ++AY
Sbjct: 141 PVILCGDLNVAHEDIDIANPASNHKNAGFTDEERGRMTDLLAAGFTDSFRHLHPDEKDAY 200
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
+ W A + N G RID+ L +
Sbjct: 201 SWWSYFAKARERNVGWRIDYFLVS 224
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 126/286 (44%), Gaps = 62/286 (21%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYESF 58
K++++NVNGLR V+ + LD F DADI C QE+KL +++ DL GY +
Sbjct: 10 KMISWNVNGLRAAVT-----KGFLDFFRDIDADIFCIQESKLSEGQIELDL---PGYYDY 61
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ + + GYSGVA F + K P+ G G+E+
Sbjct: 62 WNYAQ-----KKGYSGVAVFTKDK----------PLNVTYGI-------------GIEEH 93
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
D+EGR + ++ F + Y P + T R+++++ + K + L +
Sbjct: 94 --------DNEGRVITAEYEDFYMITCYTPNSQRGLT-RLEYRMTWEDAFLK-YILELEK 143
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + GDLN+A ID R +AG F E M V F D FR
Sbjct: 144 NKPVIFCGDLNVAHTEIDLKNPKTNRKNAG--FTDEE----RAKMDVILSSGFVDSFRVL 197
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
+P++ +AY+ W GA N G RID+ + + + + + H+
Sbjct: 198 YPDKTDAYSWWSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHS 243
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 126/274 (45%), Gaps = 64/274 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR + ++ + DAD C QETK++ +L + +GY S+++
Sbjct: 1 MKFISWNVNGLRACCEK--GFKESFAALDADFFCLQETKMQEGQLDLEF---EGYRSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R +P + T GL GLE+
Sbjct: 56 YAE-----KKGYSGTAIFSR-HAPLNVT------------YGL----------GLEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQKRWEFLLCQG 179
D EGR + + F L VY P +S+D + R+ +++Q+ + +LL
Sbjct: 86 ------DREGRVITLEMPDFFLVTVYTP--NSQDGLKRLDYRMQWEEAFRA---YLLQLD 134
Query: 180 RR--IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
R + V GDLN+A ID R +AG D + +F I L++SG F D FR
Sbjct: 135 TRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGI-----LLDSG--FTDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+R Y+ W A + N G RID+ L +
Sbjct: 188 FFYPDREGIYSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMIWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKELEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
T++EGSDH PV + L
Sbjct: 235 ---------------------TQIEGSDHCPVVLFL 249
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNTGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
T++EGSDH PV + L
Sbjct: 235 ---------------------TQIEGSDHCPVVLFL 249
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 120/283 (42%), Gaps = 56/283 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DADI C QETKL+ ++ DL GY +++
Sbjct: 1 MKLISWNVNGLRAAVKH--GFLDVFNELDADIFCVQETKLQEGQIDLDL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + PVA G G+ +F
Sbjct: 56 YAE-----KKGYSGTAVFTKRE----------PVAVSYGL-------------GIPEF-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + ++ F L Y P + E R+ +++ + F K+ L
Sbjct: 86 ------DQEGRVITLEYEKFFLVTCYTPNSQPE-LRRLDYRMNWDDAFRAYVKQ----LA 134
Query: 178 QGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + GDLN+A ID R + +E R F +L +SG F D +R +P
Sbjct: 135 DTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTELL-QSG--FTDTYRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
++ Y+ W A N G RID+ + + Q D + H
Sbjct: 192 DKEGVYSWWSYRFNARANNAGWRIDYFVTSQALDKQLADAKIH 234
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 126/271 (46%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL Q+ + DL +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QDGQIDL-NPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-QEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITVEFEGFYMITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R ++E G F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W GA N G R+D+ + +
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|315641336|ref|ZP_07896412.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
gi|315482909|gb|EFU73429.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
Length = 252
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 136/329 (41%), Gaps = 94/329 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + DAD C QETKL+ +++ DL GY +++
Sbjct: 1 MKLISWNVNGLRAVMKK--NFMDVFTQLDADFFCLQETKLQAGQIEMDL---PGYTQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P A+ F G+ G E+
Sbjct: 56 YAV-----KKGYSGTAIFA--KEP-----------ADNVFYGI----------GKEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLC 177
D EGR + ++ F L Y P + +E R++++ F L + L
Sbjct: 86 ------DQEGRVITLEYPQFYLVTCYTPNSQNELKRLDYRMEWEDDFVAYLDE-----LK 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ R + V GDLN+A ID + +AG NE R F ++L + D FR
Sbjct: 135 KDRPVIVCGDLNVAHQEIDLKNWKTNQKNAG---FTNEERAKFTALL---DHGYTDTFRH 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 290
+PE AY+ W A + N G RID+ + + +DL SH +T DIL
Sbjct: 189 FYPELTGAYSWWSYRFNARKNNAGWRIDYFIVS-------NDLTSH--LTSASIHADIL- 238
Query: 291 DYKRWKPGNAPRWKGGMSTRLEGSDHAPV 319
GSDH PV
Sbjct: 239 ----------------------GSDHCPV 245
>gi|226358180|ref|YP_002787919.1| Exodeoxyribonuclease III [Deinococcus deserti VCD115]
gi|226319823|gb|ACO47817.1| putative Exodeoxyribonuclease III [Deinococcus deserti VCD115]
Length = 270
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 112/270 (41%), Gaps = 54/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ T+NVN L R G + L++ D++ QETKL + A GY + FS
Sbjct: 1 MKLATWNVNSLNVR---LGQVMAWLEAQQPDVLALQETKLPDDRFPVAELEALGYRAVFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R+ P ++ +P GL+
Sbjct: 58 -------GQKSYNGVALLSRL--PLEDVQIGIP--------------------GLD---- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D + R V G + +Y P + D+ + +KL++ ++ + L
Sbjct: 85 ------DEQRRVVAATVGGMRVVCLYVPNGQAVDSPKYTYKLEWLSAVRAWLQLELMAHP 138
Query: 181 RIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
R+ VVGD N+AP D + AG R FR++L D FR HP+
Sbjct: 139 RLAVVGDFNVAPEDRDVHSPKRWAGQVLVSEPERQAFRALL---DLGLHDAFR-LHPQPE 194
Query: 237 EAYTCWPSNTGAEQF--NYGTRIDHILCAG 264
++ W N G F N+G RIDH+L +G
Sbjct: 195 RVFSWW--NYGRLGFPRNWGLRIDHVLVSG 222
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 58/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR + + L+SF DADI QETK++ + + DL GY+
Sbjct: 1 MKLISWNVNGLRACLG-----KGFLESFAALDADIFSIQETKMQPGQAELDL---PGYKQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F R++ P + V + +EE
Sbjct: 53 YWNSAE-----KKGYSGTAVFTRLE-PLN---VTYGIGSEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F L N Y P A E T R+ +++++ L+ +LL
Sbjct: 86 ---------DREGRAITLEFEDFYLVNCYVPNAQRELT-RLDWRMEWEDALRA---YLLE 132
Query: 178 QGRR--IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 232
R + GDLN+A ID +A + F R + L+E+G F D FR +
Sbjct: 133 LDSRKPVIYCGDLNVAHQEIDLKNAKSNRGNAGFTDEERAKMTQLLEAG--FVDSFRHLY 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P++ AY+ W A + N G RID+ L +
Sbjct: 191 PDKTGAYSWWSYMFHAREKNAGWRIDYFLVS 221
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 123/284 (43%), Gaps = 71/284 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F DADI C QETK++ +L +L Y +
Sbjct: 1 MKLISWNVNGIRACVQ-----KGFLDFFHEADADIFCIQETKMQEGQLNLELERYHQYWN 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+ + GYSG A F + K P S V+ + EE
Sbjct: 56 Y--------AVKKGYSGTAVFTK-KEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEF 174
D EGR + + F VY P + SE R+ +++++ F K+ E
Sbjct: 86 ---------DQEGRVITCEFEDFYFVTVYTPNSQSE-LARLDYRMKWEDDFRAYLKKLE- 134
Query: 175 LLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFD 226
+ + + V GDLN+A ID R +AG D + +F + L+++G F D
Sbjct: 135 ---KKKPVIVTGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKF-----TELLDAG--FID 184
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
FR +P++ Y+ W A N G RID+ C CL +
Sbjct: 185 TFRYFYPDQEGIYSWWSYRFSARAKNAGWRIDY-FCVSECLKDR 227
>gi|424033139|ref|ZP_17772555.1| exodeoxyribonuclease III [Vibrio cholerae HENC-01]
gi|424037966|ref|ZP_17776644.1| exodeoxyribonuclease III [Vibrio cholerae HENC-02]
gi|408875218|gb|EKM14372.1| exodeoxyribonuclease III [Vibrio cholerae HENC-01]
gi|408894932|gb|EKM31484.1| exodeoxyribonuclease III [Vibrio cholerae HENC-02]
Length = 268
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 122/282 (43%), Gaps = 53/282 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR R+ Q L+ L+D D+I QE K+ + D V A GY+ +F
Sbjct: 1 MKVISFNINGLRARLHQ---LQALIDKHQPDVIGLQEIKVHDEAFPIDDVEAMGYKVYFH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGF-TGLLETSGSKIMEGLEDFS 119
G+ + GVA C+ + P++ ++GF T E IM E
Sbjct: 58 -------GQKAHYGVAMLCKQE----------PISVQKGFPTDNEEHQKRMIMATFE--- 97
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADS-EDTVRIQFKLQFFHVLQKRWEFLLCQ 178
D G V +G+F P+ D+ + +K QF+ L
Sbjct: 98 -------DENGEKVTVLNGYF-------PQGDNVAHETKYPYKRQFYKDLMTYLNDHHTN 143
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAK----------NEFRIWFRSMLVESGGSFFDVF 228
++ V+GD+NI+P D P+ + E R W +++L F D F
Sbjct: 144 DEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEEREWLQTLL---DWGFEDTF 200
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
R+ HPE + ++ + + N G RID IL A P L +K
Sbjct: 201 RNLHPEVDDRFSWFDYRSRGFDDNRGLRIDVIL-ATPSLAEK 241
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 136/331 (41%), Gaps = 84/331 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ +ADI C QETKL QE + ++ + + Y +++
Sbjct: 2 MKLISWNVNGLRACVNK--GFYDYFKEANADIFCLQETKL--QEGQIEMEIGEEYHQYWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R++ P S + GLE+
Sbjct: 58 YAE-----KKGYSGTAVFTRME-PLS------------------------VRYGLEE--- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ-- 178
+ EGR + + F L VY P A D R+ ++L++ + R+ L Q
Sbjct: 85 ----DHEPEGRVITLEFQDFYLVTVYTPNA-KRDLSRLDYRLEW----EDRFRNYLLQLD 135
Query: 179 -GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERR 236
+ + V GDLN+A ID +A + + F R + F D +R +P++
Sbjct: 136 AKKPVVVCGDLNVAHQEIDLKNAKSNRNNSGFTPEEREKMTSLLAAGFVDTYRYFYPDQT 195
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+AYT W + N G RID+ L +
Sbjct: 196 DAYTWWSFMPKVRERNIGWRIDYFLASERL------------------------------ 225
Query: 297 PGNAPRWKG-GMSTRLEGSDHAPVYMCLGEV 326
AP G G+ +++ GSDH PV + G++
Sbjct: 226 ---APSLLGAGIDSQVLGSDHCPVVLEFGKI 253
>gi|385871780|gb|AFI90300.1| Exodeoxyribonuclease III [Pectobacterium sp. SCC3193]
Length = 268
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 118/272 (43%), Gaps = 47/272 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR R Q L +++ D+I QETK+ + V GY ++
Sbjct: 1 MKVVSFNINGLRARPHQ---LAAIIEQHQPDVIGLQETKVHDDMFPLEDVSQYGYHVYY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA C+ + P+A GF + + +I+ + DF+
Sbjct: 57 ------HGQKGHYGVALLCKEQ----------PIAVRRGFPTDEDDAQRRII--MADFA- 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
T+HG + N Y P+ +S D V+ K +F+ LQ E
Sbjct: 98 --------------TEHGTLTVVNGYFPQGESRDHPVKFPAKTRFYQDLQTYLEQHHSAT 143
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--------SGGSFFDVFRSK 231
+ + V+GD+NI+P +D G + K R S L E G D FR+
Sbjct: 144 QPLIVMGDVNISPTDLD-IGIGEENRKRWLRTGKCSFLPEEREWMARLQGWGLIDTFRAA 202
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE + ++ + + N G RID IL +
Sbjct: 203 NPESNDRFSWFDYRSAGFDDNRGLRIDLILAS 234
>gi|331006177|ref|ZP_08329501.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC1989]
gi|330420008|gb|EGG94350.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC1989]
Length = 271
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 121/281 (43%), Gaps = 57/281 (20%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
MK+++ NVNG+R R FG L+K+ DAD+IC QE K + +++ L +GY S+
Sbjct: 1 MKVISINVNGIRAAARKGMFGWLKKV----DADVICLQELKAQPDQIEDSLYHPEGYYSY 56
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
F + GYSGV +C+ K P A G + + ED
Sbjct: 57 FHSAE-----KKGYSGVGIYCKEK----------PKAIHMGLGAIDDAD-------WED- 93
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-- 176
+D EGR + D + ++Y P +++ + +F +V+ +++E +L
Sbjct: 94 -------VDREGRYIQVDFKDVSVVSLYMPSGSAKEE-----RQEFKYVMMEKFEAVLRS 141
Query: 177 --CQGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGG------SF 224
+ R + GD NIA +D R + E R W +L E F
Sbjct: 142 MQRKKREFIICGDWNIAHKKVDIKNWRGNQKNSGFLPEERSWMDWLLNEEDSLRNDNLQF 201
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID-HILCAG 264
D FR + E + YT W + A N G RID HI+ G
Sbjct: 202 VDAFRIINQEEHQ-YTWWSNRGQAWANNTGWRIDYHIVSKG 241
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
T++EGSDH PV + L
Sbjct: 235 ---------------------TQIEGSDHCPVVLFL 249
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 141/332 (42%), Gaps = 92/332 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + + ++FDAD C QETKL+ +++ DL GY +++
Sbjct: 12 MKFISWNVNGLRAIVKK--NFLEAFETFDADFFCLQETKLQAGQIELDL---PGYTQYWN 66
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P +AA G G+E+
Sbjct: 67 YAE-----KKGYSGTAIFA--KEP--------ALAAHYGI-------------GIEEH-- 96
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + ++ F L Y P A +E R+ +++ + + +L L Q
Sbjct: 97 ------DAEGRVITLEYPEFFLVTCYTPNAQNE-LRRLDYRMTWEDAFRA---YLTDLKQ 146
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID + +AG F E R F ++L F D FR
Sbjct: 147 QKPVILCGDLNVAHQNIDLKNWKTNQKNAG--FTPEE-REKFSTLL---SAGFTDTFRYF 200
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
+P+ Y+ W A + N G RID+ + + DL D L+D
Sbjct: 201 YPDAEGIYSWWSYRFNARKNNAGWRIDYFVVSD-------DLN------------DRLVD 241
Query: 292 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
K + T + GSDH PV + L
Sbjct: 242 AK-------------IHTEILGSDHCPVELQL 260
>gi|404379070|ref|ZP_10984141.1| exodeoxyribonuclease III (xth) [Simonsiella muelleri ATCC 29453]
gi|294483422|gb|EFG31107.1| exodeoxyribonuclease III (xth) [Simonsiella muelleri ATCC 29453]
Length = 259
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 124/296 (41%), Gaps = 47/296 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I++ NVNG+R + G L + S ADI+C QE K + +L D+ G +
Sbjct: 1 MRIISANVNGIRSAYKK-GFLAYIAQS-GADIVCVQELKAQESDLSDDMQRPHGMHGVWH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + + GYSGVA + + K P + G G+E F
Sbjct: 59 CAQ-----KRGYSGVAIYSKQK----------PDHVQIGL-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR V D GH + ++Y P S + R +K +F L GR
Sbjct: 89 ------DNEGRFVRADFGHLSVISLYLPSGTSAEE-RQAYKYEFLDAFYPLLAELKASGR 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ V GD NIA ID + + + F R W ++ + G + D++R+ +P+
Sbjct: 142 DVVVCGDWNIAHQNIDIKNWKGNLKNSGFLPEEREWIGHVITKLG--WVDIWRTLYPD-V 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 292
YT W + A + G RID+ + + H + V + +++DY
Sbjct: 199 AGYTWWSNRGQAYANDVGWRIDYQMVTPNLATKAHTAHVYKEVKFS-DHAPLVVDY 253
>gi|167837200|ref|ZP_02464083.1| exodeoxyribonuclease III [Burkholderia thailandensis MSMB43]
gi|424903562|ref|ZP_18327075.1| exodeoxyribonuclease III [Burkholderia thailandensis MSMB43]
gi|390931435|gb|EIP88836.1| exodeoxyribonuclease III [Burkholderia thailandensis MSMB43]
Length = 258
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 120/274 (43%), Gaps = 49/274 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVN L R + L D D++C QE K+ ++ + + A GY S+F+
Sbjct: 1 MKIATWNVNSLNVRKQH---VLDWLAQSDVDVLCLQELKIPDEKFPREALEAAGYRSWFA 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R + PF +V + + G ED S+
Sbjct: 58 -------GQKTYNGVAILARARLPFDEADVV------------------RNIPGFED-SQ 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
L+ +G +++ Y P + D+ + +K+Q+ LQ + L +
Sbjct: 92 QRLIAATIDGVRIVS---------AYFPNGQALDSEKFVYKMQWLDALQAWLKRELQRYP 142
Query: 181 RIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS-KHPER 235
++ ++GD NIAP D D G + + R F + LV G F D FR PE+
Sbjct: 143 KLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHF-AQLVALG--FVDAFRRFDQPEK 199
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 269
+T W A + N G RIDHIL + P L +
Sbjct: 200 --TFTWWDYRMLAFRRNAGLRIDHILLS-PALAE 230
>gi|403058474|ref|YP_006646691.1| exonuclease III [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402805800|gb|AFR03438.1| exonuclease III [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 268
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 118/272 (43%), Gaps = 47/272 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR R Q + +++ D+I QETK+ + V GY ++
Sbjct: 1 MKVVSFNINGLRARPHQLAA---IIEQHQPDVIGLQETKVHDDMFPLEDVSQYGYHVYY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA C+ + P+A GF + + +I+ + DF+
Sbjct: 57 ------HGQKGHYGVALLCKTQ----------PIAVRRGFPTDEDDAQRRII--MADFA- 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
T+HG + N Y P+ +S D V+ K +F+ LQ E
Sbjct: 98 --------------TEHGTLTVVNGYFPQGESRDHPVKFPAKTRFYQDLQTYLEQHHSAT 143
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--------SGGSFFDVFRSK 231
+ + V+GD+NI+P +D G + K R S L E G D FR+
Sbjct: 144 QPLIVMGDVNISPTDLD-IGIGEENRKRWLRTGKCSFLPEEREWMARLQGWGLIDTFRAA 202
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+ + ++ + + N G RID IL +
Sbjct: 203 NPDSNDRFSWFDYRSAGFDDNRGLRIDLILAS 234
>gi|417762544|ref|ZP_12410533.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000624]
gi|417775062|ref|ZP_12422922.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000621]
gi|417783614|ref|ZP_12431332.1| exodeoxyribonuclease III [Leptospira interrogans str. C10069]
gi|418671514|ref|ZP_13232865.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000623]
gi|418692233|ref|ZP_13253312.1| exodeoxyribonuclease III [Leptospira interrogans str. FPW2026]
gi|400358023|gb|EJP14142.1| exodeoxyribonuclease III [Leptospira interrogans str. FPW2026]
gi|409941537|gb|EKN87165.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000624]
gi|409953238|gb|EKO07739.1| exodeoxyribonuclease III [Leptospira interrogans str. C10069]
gi|410575159|gb|EKQ38181.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000621]
gi|410581473|gb|EKQ49283.1| exodeoxyribonuclease III [Leptospira interrogans str. 2002000623]
Length = 254
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 50/281 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + + D ICFQETK + ++ S L GY F
Sbjct: 1 MKFISLNCNGIRSSLEK--GLADYIRNTKPDFICFQETKANQDQVPSTLWEEGGYTPVFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA L + KI+ G+ D
Sbjct: 59 SAE-----KKGYSGVAV-------------------------LYKKPPEKIIIGIGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D +R K++F + QK +
Sbjct: 86 ---PFFDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I V GD+NIA D D + + F R W L + D FR +P+++
Sbjct: 142 NIIVCGDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
E Y+ W GA N G RID+ K +++SH+
Sbjct: 199 E-YSWWTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 235
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 124/276 (44%), Gaps = 68/276 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF +AD+ C QETK++ + DL GYE
Sbjct: 1 MRFVSWNVNGLR------AALKKGFMESFKELNADVFCLQETKMQEGQAILDL---PGYE 51
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F RVK P++ G G+E
Sbjct: 52 QYFYSAE-----KKGYSGTAIFTRVK----------PLSVSYGI-------------GIE 83
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
+ D+EGR + + L VY P A R+ +++ + + FLL
Sbjct: 84 EH--------DNEGRVITMELPDVYLVTVYTPNA-KRALERLDYRMAWEDSFRA---FLL 131
Query: 177 -CQGRRIFVV-GDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227
+ ++ VV GDLN+A ID R +AG +E R F +L F D
Sbjct: 132 DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
FR+ +P++ AYT W A + N G RID+ L +
Sbjct: 186 FRALYPDKTGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|183221215|ref|YP_001839211.1| exodeoxyribonuclease [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911306|ref|YP_001962861.1| exodeoxyribonuclease III [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775982|gb|ABZ94283.1| Exodeoxyribonuclease III [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779637|gb|ABZ97935.1| Exodeoxyribonuclease [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 256
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 114/267 (42%), Gaps = 46/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T N NG+R +S+ L + + DI+CFQETK +E+ + GYE +FS
Sbjct: 1 MKIITLNCNGIRSSLSK--GLLDFIRHENPDILCFQETKAPGKEIDREEFRHLGYEVYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + K P GF G I
Sbjct: 59 LAE-----KPGYSGTAVLTKQK----------PKQVTIGF-------GDGIFR------- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
SEGR V + F L+N+Y P S + R + K QF + + L + +
Sbjct: 90 -------SEGRSVFLEFQDFYLWNLYFPSGTSGEE-RQKVKYQFLDEFTELTKPFLKKKK 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD+NIA +D + + + F R WF L E G FFD FR+ HP+
Sbjct: 142 PLLICGDVNIAHTEMDIHNPKGNQNNSGFLPAERKWFTDFL-ELG--FFDCFRTIHPDVL 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ Y+ W A + N G RID+
Sbjct: 199 DEYSWWTYRFQARKNNKGWRIDYFFVT 225
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMIWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
T++EGSDH PV + L
Sbjct: 235 ---------------------TQIEGSDHCPVVLFL 249
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMIWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
T++EGSDH PV + L
Sbjct: 235 ---------------------TQIEGSDHCPVVLFL 249
>gi|421079613|ref|ZP_15540551.1| Exodeoxyribonuclease III [Pectobacterium wasabiae CFBP 3304]
gi|401705699|gb|EJS95884.1| Exodeoxyribonuclease III [Pectobacterium wasabiae CFBP 3304]
Length = 268
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 117/272 (43%), Gaps = 47/272 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR R Q ++ K D+I QETK+ + V GY ++
Sbjct: 1 MKVVSFNINGLRARPHQLAAIIK---QHQPDVIGLQETKVHDDMFPLEDVSQYGYHVYY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA C+ K P+A GF + + +I+ + DF+
Sbjct: 57 ------HGQKGHYGVALLCKDK----------PLAVRRGFPTDEDDAQRRII--MADFA- 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
T+HG + N Y P+ +S D V+ K +F+ LQ E
Sbjct: 98 --------------TEHGTLTVVNGYFPQGESRDHPVKFPAKTRFYQDLQTYLEQHHSAT 143
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--------SGGSFFDVFRSK 231
+ + V+GD+NI+P +D G + K R S L E G D FR+
Sbjct: 144 QPLIVMGDVNISPTDLD-IGIGEENRKRWLRTGKCSFLPEEREWMARLQGWGLIDTFRAA 202
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+PE + ++ + + N G RID IL +
Sbjct: 203 NPESNDRFSWFDYRSSGFDDNRGLRIDLILAS 234
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 125/284 (44%), Gaps = 71/284 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK V++NVNG+R V + LD F DADI C QE+K++ +L+ DL GY
Sbjct: 1 MKFVSWNVNGIRACVQ-----KGFLDFFTEADADIFCIQESKMQEGQLELDL---PGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S V + EE
Sbjct: 53 YWNYAV-----KKGYSGTAVFTK-KEPLS---VTYGIGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEF 174
D EGR + + F VY P + +E R+ +++++ F + K+ E
Sbjct: 86 ---------DQEGRVITCEFEDFYFVTVYTPNSQNE-LARLDYRMRWEDDFRMYLKKLE- 134
Query: 175 LLCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFD 226
+ + + V GD+N+A ID R +AG D + +F + L+++G F D
Sbjct: 135 ---EKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGKF-----TELLDAG--FID 184
Query: 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
FR +P+R Y+ W A N G RID+ C L ++
Sbjct: 185 TFRYFYPDREGIYSWWSYRFSARAKNAGWRIDY-FCVSESLKER 227
>gi|426405542|ref|YP_007024513.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus str. Tiberius]
gi|425862210|gb|AFY03246.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus str. Tiberius]
Length = 255
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 109/268 (40%), Gaps = 52/268 (19%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR + + R+ + ADIIC QE K+ + +K D E F+
Sbjct: 1 MISWNVNGLRSVHRK--NFREWFEKEKADIICLQEIKITDEAIKKD-------EEFYHPA 51
Query: 63 RTSDKG----RTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
+ + GYSG+A + + + + +P
Sbjct: 52 KYHSSWAFAEKAGYSGLALYSKKEPDDVRIGLGIP------------------------- 86
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
K D EGR + D G + N Y P + E T R+ FKL+F +KR + L +
Sbjct: 87 ------KFDIEGRWLEADFGPITVVNSYWPNSQREHT-RLPFKLEFCAAAEKRLQALRKK 139
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 234
GR + + GD NIA ID + + F R W L + D FR K +
Sbjct: 140 GREVIICGDFNIAHKEIDLRNPKTNMKNAGFLPEERAWMTKFL--DKLEWVDSFR-KFEQ 196
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILC 262
+ YT W G + N G R+D+ L
Sbjct: 197 GPDHYTWWSYRPGVREKNIGWRLDYFLV 224
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P+ G G+E+
Sbjct: 53 YWNYAE-----KKGYSGTAIFTKQE----------PLTVSYGL-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + + +R+ +++ + +K +L
Sbjct: 85 H--------DKEGRVITLEFEKFYMVTVYTPNS-KDKLLRLDYRMTWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKAVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
T++EGSDH PV + L
Sbjct: 235 ---------------------TQIEGSDHCPVVLIL 249
>gi|83718841|ref|YP_442378.1| exodeoxyribonuclease III [Burkholderia thailandensis E264]
gi|167619376|ref|ZP_02388007.1| exodeoxyribonuclease III [Burkholderia thailandensis Bt4]
gi|257138580|ref|ZP_05586842.1| exodeoxyribonuclease III [Burkholderia thailandensis E264]
gi|83652666|gb|ABC36729.1| exodeoxyribonuclease III [Burkholderia thailandensis E264]
Length = 258
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 137/330 (41%), Gaps = 78/330 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I T+NVN L R + L D D++C QE K+ ++ + + A GY S+F+
Sbjct: 1 MRIATWNVNSLNVRKQH---VLDWLAQSDVDVLCLQELKIPDEKFPREALEAAGYRSWFA 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R PF T+V + + G ED ++
Sbjct: 58 -------GQKTYNGVAILARASLPFDETDVV------------------RNIPGFED-TQ 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
L+ +G +++ Y P + D+ + +K+Q+ LQ + L +
Sbjct: 92 QRLIAATIDGVRIVS---------AYFPNGQALDSDKFVYKMQWLDALQAWLKNELQRYP 142
Query: 181 RIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS-KHPER 235
++ ++GD NIAP D D G + + R F + LV G F D FR PE+
Sbjct: 143 KLALLGDYNIAPEDRDVHDPSKWEGQNLVSPQERAHF-AQLVALG--FVDAFRRFDQPEK 199
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
+T W A + N G RIDHIL + P L + TC C +
Sbjct: 200 --TFTWWDYRMLAFRRNAGLRIDHILLS-PALAE----------TC--TSCTV------- 237
Query: 296 KPGNAPR-WKGGMSTRLEGSDHAPVYMCLG 324
APR W+ + SDH PV LG
Sbjct: 238 --DRAPRAWE-------QPSDHTPVVAQLG 258
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 64/274 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR +++ DADI C QE+K+ + +D V DGY +++
Sbjct: 1 MRLISWNVNGLRACMNK--GFMDFFRQIDADIFCIQESKMHPDQ--ADFVF-DGYHGYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV + + P+ E G+E
Sbjct: 56 SAE-----KKGYSGVVVLSKQE----------PLCVEYDM-------------GIEHH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLL 176
D EGR + ++ F L NVY P + E R+++++Q F + L+ L
Sbjct: 86 ------DKEGRVICAEYPDFYLINVYTPNSKRE-LERLEYRMQWEDDFLNFLKN-----L 133
Query: 177 CQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR 229
+ + + + GDLN+A ID R +AG F E + L+E+G F D FR
Sbjct: 134 ERKKPLIICGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MTTLLENG--FIDTFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+ AY+ W A Q N G RID+ LC+
Sbjct: 188 YFYPDLEGAYSWWSYMGRARQNNTGWRIDYFLCS 221
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 136/336 (40%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-EEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMITVYTPNSKDE-LLRLDYRMVWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L+ESG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLESG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P+ Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPDLEHVYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ EGSDH PV + L
Sbjct: 235 ---------------------AQTEGSDHCPVVLFL 249
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 118/268 (44%), Gaps = 51/268 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG R + + + + L + AD C QETKL+R ++ D AD + ++
Sbjct: 1 MKFISWNVNGFRA-LQRKMDVNEWLKNTGADAFCIQETKLQRSQV--DFQTADYLQYWY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GYSG A + K P+ G G+++F
Sbjct: 57 -----DAEKKGYSGTAIITKNK----------PLNVTYGI-------------GVDEF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ + L VY P A D R+ F+L++ F+ R
Sbjct: 87 ------DHEGRVITLEYEDYYLMTVYTPNA-QRDLKRLGFRLKWGQAFT---NFIDRLDR 136
Query: 181 RIFVV--GDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 235
R VV GDLN+A AID + + F R S L+++G F D FR HP+R
Sbjct: 137 RKPVVFCGDLNVAHQAIDLKNPKSNMKNAGFTAEERQDFSELLDTG--FIDSFRYLHPDR 194
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
AY+ W A N G RID+ + +
Sbjct: 195 EGAYSWWSYMGNARARNVGWRIDYFVIS 222
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 122/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + L GG F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEERE---KFTLALEGG-FVDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYLMGARAKNIGWRLDYFVVS 222
>gi|451821030|ref|YP_007457231.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787009|gb|AGF57977.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 68/275 (24%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYESF 58
K++++NVNGLR + LD F DADI C QE+KL+ ++ DL +GY+S+
Sbjct: 3 KLISWNVNGLRACAG-----KGFLDFFKEVDADIFCIQESKLQEGQIDLDL---EGYKSY 54
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ + GYSG A F + + P++ ++G G+ E
Sbjct: 55 WNYAE-----KKGYSGTAVFTKEE----------PISVKKGI-GISEH------------ 86
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--L 176
D+EGR + ++ F L VY P + + R+ +++ + V +K +L L
Sbjct: 87 --------DNEGRVITAEYDDFYLVTVYTPNS-KQALERLDYRMVWEDVFRK---YLKEL 134
Query: 177 CQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVF 228
+ + + V GDLN+A ID R +AG D +++ S L+E+G F D +
Sbjct: 135 EEKKPVIVCGDLNVAHKEIDLKNPKANRRNAGFTDEERDKM-----SELLEAG--FIDTY 187
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
R +P+ Y+ W A N G RID+ L +
Sbjct: 188 RHFYPDVEGVYSWWSYRFNARANNAGWRIDYFLTS 222
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 127/280 (45%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+++
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIDEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFHMITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN++ ID + P F+ E R F +L E F D +R +
Sbjct: 136 KKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEE-REKFTKILEE---GFVDTYRFLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
PE+ AY+ W GA N G R+D+ + + H+ D
Sbjct: 192 PEQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 121/273 (44%), Gaps = 68/273 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V LD F +AD+ C QETK++ +++ L DGY S
Sbjct: 1 MKLISWNVNGLRACVKN-----GFLDFFTKENADVFCIQETKIQEEQIPFQL---DGYYS 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + + GYSG A F S TE P+ G G+E+
Sbjct: 53 YWNFAQ-----KKGYSGTAIF-------SKTE---PINVSYGI-------------GMEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEF 174
D EGR + ++ F L VY P R + R++++ F L+
Sbjct: 85 H--------DQEGRVITLEYEPFFLVTVYTPNSQRGLARLDYRMKWEDDFLAYLKT---- 132
Query: 175 LLCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + I GDLN+A ID + +AG F E R F +L F D
Sbjct: 133 -LEKSKPIIFCGDLNVAHQEIDLKNPKTNKKNAG--FTSEE-RDKFSQVL---NHGFIDS 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
FR +PE+R+AYT W A N G RID+
Sbjct: 186 FRFFYPEQRDAYTWWSYMFNARANNAGWRIDYF 218
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 131/284 (46%), Gaps = 58/284 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
+K +++NVNGLR + + LDSF +AD C QETKL+ +++ ++ GY
Sbjct: 4 LKYISWNVNGLRACIK-----KGFLDSFKNLNADCFCLQETKLQPHQIELNI---PGYYQ 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F ++K P++ G
Sbjct: 56 YWNSAI-----KKGYSGTALFTKIK----------PISVSYGMN---------------- 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
+ + D EGR + + + L Y P + + R+++++++ + K + L
Sbjct: 85 -----IEEHDQEGRLITAEFENHFLVVCYTPNSQRQ-LARLEYRMKWENDF-KNYLLKLT 137
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + + GDLN+A ID + + F +E + + S L+E+G F D FR +
Sbjct: 138 ESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKF--STLLENG--FTDTFRYLY 193
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
P++++AY+ W + + N G RID+ L + ++ D + H
Sbjct: 194 PDKKDAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIH 237
>gi|152979786|ref|YP_001351880.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille]
gi|151279863|gb|ABR88273.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille]
Length = 259
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 113/277 (40%), Gaps = 53/277 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIV+ N+NG+R + + DAD IC QE K + ++ + + GY +F
Sbjct: 2 LKIVSANLNGIRSAAKK--GFFTWMAKHDADFICVQELKAQAPDMTPEFLTPPGYTGYFH 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG +C+ +P + GF G +F
Sbjct: 60 YAE-----KKGYSGAGVYCKT----------VPDHVQIGF-------------GCSEF-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR V D G + +VY P S + ++ K +F V L QGR
Sbjct: 90 ------DAEGRYVQCDFGKLSVISVYCPSGSSSEERQLA-KFRFMDVFLPHLLELKAQGR 142
Query: 181 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ GD NIA ID R ++G F E R W + E G DV+R HP
Sbjct: 143 DFVICGDWNIAHNEIDLKNFKGNRKNSG--FLPEE-RAWLSRVFDEVG--LVDVYRRLHP 197
Query: 234 -ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 269
E YT W + A N G RID+ + A P L +
Sbjct: 198 TTTEECYTWWSNRGQAYAKNVGWRIDYQV-ATPALAE 233
>gi|114707219|ref|ZP_01440117.1| exodeoxyribonuclease III [Fulvimarina pelagi HTCC2506]
gi|114537415|gb|EAU40541.1| exodeoxyribonuclease III [Fulvimarina pelagi HTCC2506]
Length = 260
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 43/266 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M I ++N+NG++ R+ L L + DI C QE K + + ++ GY
Sbjct: 1 MLIASWNINGIKARID---GLTAWLQERNPDIACLQEIKSQDETFPKKVIEDLGY----- 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G++GVA + K P + G G ++ +EGL
Sbjct: 53 --HVETHGQKGFNGVALLSKEK----------PESVRRGLPGDESDEQARYIEGLWQ--- 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
TD G + ++Y P + T + ++KL + L++ E LL
Sbjct: 98 --------------TDSGPLRVASIYLPNGNPLGTAKFEYKLAWMDRLERHAEALLAHEE 143
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS---MLVESGGSFFDVFRSKHPERRE 237
R+ + GD N+ P D D F+ R LV G F D R +R E
Sbjct: 144 RLILAGDYNVIPQPKDVHDPAAWLNDALFQPESRGNLRRLVHLG--FADALRMTD-DRAE 200
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCA 263
YT W GA Q N G RIDH+L +
Sbjct: 201 LYTFWDYQAGAWQKNNGIRIDHLLLS 226
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 122/280 (43%), Gaps = 63/280 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + + DAD C QETKL+ ++ + +GY +++
Sbjct: 1 MKFISWNVNGLRACVKK--GFTEFFEQTDADFFCIQETKLQEGQIDFE---PEGYFCYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S V + EE
Sbjct: 56 YAV-----KKGYSGTAIFAK-KEPLS---VQYGIGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + ++ +F + VY P + SE + R+Q++ F LQ+ L
Sbjct: 86 ------DQEGRVITLEYENFYMVTVYTPNSQSELARLSYRMQWEDDFRAYLQQ-----LD 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + + GDLN+A ID R +AG +E R F + L F D FR
Sbjct: 135 EKKPVIMCGDLNVAHQEIDLKNPKTNRHNAG---FTDEEREKFTTFL---DAGFTDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+P++ E Y+ W A + N G RID+ C L +K
Sbjct: 189 FYPDKTEIYSWWSYRFKAREKNAGWRIDY-FCTSKRLDEK 227
>gi|119358281|ref|YP_912925.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides DSM 266]
gi|119355630|gb|ABL66501.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides DSM 266]
Length = 256
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 47/262 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NVNG+R R +L + D++ QE K ++ + + +GY+SF++
Sbjct: 1 MKIASWNVNGIRARQE---ALVSWIGRNSPDVLVLQEVKADLADIPASISELEGYDSFWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSG R + F+G +E
Sbjct: 58 GS----SFRKGYSGTGMLVR----------------KGAFSGTVEW-------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
E+ D E R + G F L Y PR + ++ R+ KL++F + E LL +GR
Sbjct: 84 -EIPAFDFENRTCVLHTGQFTLTGCYVPRGEGDEHYRL--KLRYFEQTRLFIENLLLEGR 140
Query: 181 RIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
+I GD+N+A ID + G + E R + L DV R + PER
Sbjct: 141 QIVFTGDMNVAHRDIDVHRSQNKPGAVGLRAEERSSIDACLALG---LRDVMRERAPERN 197
Query: 237 EAYTCWPSNTGAEQFNYGTRID 258
+ +T WP A + N G RID
Sbjct: 198 DLFTWWPYWKNARERNLGWRID 219
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 118/267 (44%), Gaps = 50/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R + + LD F +AD C QETK + +++ L DGYE
Sbjct: 1 MKFISWNVNGIRACLG-----KGFLDFFHQIEADFFCIQETKCQAGQVELAL---DGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + + GYSG A F + P++ + G G ED
Sbjct: 53 YWNYAQ-----KKGYSGTAIFTK----------HTPLSVKYGV-------------GDED 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
S+D EGR + ++ F L NVY P A D R+ +L + L + L
Sbjct: 85 -SQD-------EGRIITLEYEDFYLVNVYTPNA-QRDLARLPLRLTWEEHLASYLQDLNS 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERR 236
+ + + GDLN+A ID +A + + F R+ E S F D FR KHP
Sbjct: 136 K-KPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSELLASGFVDSFRYKHPNET 194
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ +T W + N G RID+ + +
Sbjct: 195 DHFTWWSYMNKVRERNIGWRIDYFIVS 221
>gi|429216366|ref|YP_007174356.1| exodeoxyribonuclease III [Caldisphaera lagunensis DSM 15908]
gi|429132895|gb|AFZ69907.1| exodeoxyribonuclease III [Caldisphaera lagunensis DSM 15908]
Length = 245
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 131/328 (39%), Gaps = 89/328 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T+NVNGLR +S+ G ++LL+ DII FQE K + D + GYE +
Sbjct: 1 MKILTWNVNGLRSVLSK-GLPKELLN---FDIIMFQEIK---TDTIPDELQNLGYEIYIY 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GY+G T ++K V + EE
Sbjct: 54 PAK-----RKGYAGTLTMTKIKP----KNVLFGIGNEE---------------------- 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
DSEGR + + F + N Y P A T R+ +KL F ++K FL +
Sbjct: 83 -----FDSEGRNITLEFDEFYVINSYFPNAQHGLT-RLDYKLSFNSQMEK---FLSSLKK 133
Query: 181 RIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ GD N+A ID P F + E R W L E G + D FR H E
Sbjct: 134 PKIICGDFNVAHKEIDIARPKDNVNNPGFTQQE-RDWMTHFL-ELG--YIDAFRIFHKEP 189
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
Y+ W A + N G RID+ + + + + V +CDI+
Sbjct: 190 NR-YSWWSYRFHAREKNIGWRIDYCVVSSDIVKR-------------VKDCDIM------ 229
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
++ GSDHAPVY+ +
Sbjct: 230 -------------DKIMGSDHAPVYLII 244
>gi|346311925|ref|ZP_08853923.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
gi|345899662|gb|EGX69501.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
Length = 277
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 127/288 (44%), Gaps = 47/288 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
K+ ++NVNGLR + + S ++ DAD+I QETKL+ +++ DL GY +S
Sbjct: 10 WKLASWNVNGLRAVLKKDPSFIDIVHQLDADVIALQETKLQEGQVEIDL---PGYHQVWS 66
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFS--STEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
+ R GYSG A F RV+ P S + LP A E LL +
Sbjct: 67 YAQ-----RKGYSGTAVFTRVE-PLSVRHADSLLPFAGEGEAAELLAVAA---------- 110
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQ 178
+EGR + F +VY P A +E RI ++ + + + L +
Sbjct: 111 ---------TEGRVCALEFDRFWFVDVYTPNAQNE-LARIDTRMAWDDAYRAFLKSLEDE 160
Query: 179 -GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 229
G+ + GD N+A ID R +AG D +++F + L+++G F D +R
Sbjct: 161 TGKPVITCGDFNVAHNEIDLKNPKSNRGNAGFSDEERSKF-----TELLDAG--FTDTWR 213
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
S +P+ Y+ W A + N G RID+ L + D + N
Sbjct: 214 SLNPDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDAIASNVRDARIRN 261
>gi|73539900|ref|YP_294420.1| AP endonuclease [Ralstonia eutropha JMP134]
gi|72117313|gb|AAZ59576.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Ralstonia
eutropha JMP134]
Length = 258
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 106/266 (39%), Gaps = 46/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I++ N+NG+R + + + DAD++C QE K + ++ + GY +F
Sbjct: 2 LRIISANLNGIRSASKK--GFFEWMGKQDADMVCVQELKAQAADMTEAFLAPHGYHGYFH 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV + R K E TG F
Sbjct: 60 YAE-----KKGYSGVGLYTRHKP-------------ERVITG---------------FGN 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
E DSEGR V + H + +VY P S + R Q K +F L GR
Sbjct: 87 PEF---DSEGRYVEVQYPHLAVISVYVPSGSSSEE-RQQAKFRFMEAFLPHLLQLKASGR 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD+NIA ID + + + F R W + G + DVFR P R
Sbjct: 143 EIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGQLFDMHG--YVDVFRQLDP-RP 199
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
E YT W + A N G RID+ L
Sbjct: 200 EQYTWWSNRGQAYAKNVGWRIDYHLA 225
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 141/332 (42%), Gaps = 92/332 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + + ++FDAD C QETKL+ +++ DL GY +++
Sbjct: 1 MKFISWNVNGLRAIVKK--NFLEAFETFDADFFCLQETKLQAGQIELDL---PGYTQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P +AA G G+E+
Sbjct: 56 YAE-----KKGYSGTAIFA--KEP--------ALAAHYGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL--LCQ 178
D+EGR + ++ F L Y P A +E R+ +++ + + +L L Q
Sbjct: 86 ------DAEGRVITLEYPEFFLVTCYTPNAQNE-LRRLDYRMTWEDAFRA---YLTDLKQ 135
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GDLN+A ID + +AG F E R F ++L F D FR
Sbjct: 136 QKPVILCGDLNVAHQNIDLKNWKTNQKNAG--FTPEE-REKFSTLL---SAGFTDTFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 291
+P+ Y+ W A + N G RID+ + + DL D L+D
Sbjct: 190 YPDAEGIYSWWSYRFNARKNNAGWRIDYFVVSD-------DLN------------DRLVD 230
Query: 292 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
K + T + GSDH PV + L
Sbjct: 231 AK-------------IHTEILGSDHCPVELQL 249
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 130/288 (45%), Gaps = 60/288 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR + + +DSF+ AD+ QE KL +L +L +GY+
Sbjct: 1 MKLVSWNVNGLRAVIK-----KGFVDSFNEINADVFALQEIKLSEGQLDFEL---EGYKM 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + R GYSG A F R++ P++ G G+E+
Sbjct: 53 YYNYAQ-----RKGYSGTAIFTRIE----------PISVSYGI-------------GMEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D+EGR + + F Y P + R+++++ + V + +L
Sbjct: 85 H--------DTEGRVITAEFEKFYFVTCYTPNS-KRGLERLEYRMVWEDVFRN---YLNK 132
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----NEFRIWFRSMLVESGGSFFDVFRSK 231
L + + + + GDLN+A ID + + NE R F +L +SG + D FR
Sbjct: 133 LRETKPVVLCGDLNVAHEEIDLANPATNHKNAGFTNEERSKFTELL-KSG--YIDTFRYF 189
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279
+P+R++ Y+ W + + + N G RID+ + + D + H V
Sbjct: 190 YPDRKDEYSWWSNFAKSRERNIGWRIDYFVVSEELKGNLSDAKIHQSV 237
>gi|167581292|ref|ZP_02374166.1| exodeoxyribonuclease III [Burkholderia thailandensis TXDOH]
Length = 258
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 137/330 (41%), Gaps = 78/330 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I T+NVN L R + L D D++C QE K+ ++ + + A GY S+F+
Sbjct: 1 MRIATWNVNSLNVRKQH---VLDWLAQSDVDVLCLQELKIPDEKFPREALEAAGYRSWFA 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R PF T+V + + G ED ++
Sbjct: 58 -------GQKTYNGVAILARASLPFDETDVV------------------RNIPGFED-TQ 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
L+ +G +++ Y P + D+ + +K+Q+ LQ + L +
Sbjct: 92 QRLIAATIDGVRIVS---------AYFPNGQALDSDKFVYKMQWLDALQAWLKNELQRYP 142
Query: 181 RIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS-KHPER 235
++ ++GD NIAP D D G + + R F + LV G F D FR PE+
Sbjct: 143 KLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHF-AQLVALG--FVDAFRRFDQPEK 199
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
+T W A + N G RIDHIL + P L + TC C +
Sbjct: 200 --TFTWWDYRMLAFRRNAGLRIDHILLS-PALAE----------TC--TSCTV------- 237
Query: 296 KPGNAPR-WKGGMSTRLEGSDHAPVYMCLG 324
APR W+ + SDH PV LG
Sbjct: 238 --DRAPRAWE-------QPSDHTPVVAQLG 258
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 63/280 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R +++ DADI C QETK ++ +++ +L GY +++
Sbjct: 1 MKCISWNVNGIRACITK--GFEDRFRELDADIFCLQETKCQQGQVELEL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + P++ + G G+E+
Sbjct: 56 YA-----NRRGYSGTAVFTKKE----------PISVKNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F VY P + SE R++++ F L K L
Sbjct: 86 ------DKEGRVITLEFKEFYFVTVYTPNSQSELRRLEYRMEWERDFLAYLLK-----LQ 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
+ + + GDLN+A ID R +AG +E R F +L ESG F D FR
Sbjct: 135 ESKPVICCGDLNVAHEEIDLKNPKTNRKNAG---FTDEERACFTKVL-ESG--FIDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+P++ Y+ W A + N G RID+ + + P L +K
Sbjct: 189 FYPDKEGIYSWWSYRFKAREKNAGWRIDYFITS-PSLKEK 227
>gi|150007753|ref|YP_001302496.1| exodeoxyribonuclease [Parabacteroides distasonis ATCC 8503]
gi|256840019|ref|ZP_05545528.1| exodeoxyribonuclease III [Parabacteroides sp. D13]
gi|423331753|ref|ZP_17309537.1| exodeoxyribonuclease III (xth) [Parabacteroides distasonis
CL03T12C09]
gi|149936177|gb|ABR42874.1| exodeoxyribonuclease [Parabacteroides distasonis ATCC 8503]
gi|256738949|gb|EEU52274.1| exodeoxyribonuclease III [Parabacteroides sp. D13]
gi|409229594|gb|EKN22466.1| exodeoxyribonuclease III (xth) [Parabacteroides distasonis
CL03T12C09]
Length = 284
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 113/268 (42%), Gaps = 49/268 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+TYN NGLR V + L + L D++C QETKL+ + S+ GY+S+
Sbjct: 32 LKIITYNTNGLRAAVGK--GLPEWLAQEQPDVLCIQETKLQPDQFPSETFETLGYKSYLF 89
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E
Sbjct: 90 SAQ-----KKGYSGVAILTKQE----------PDHIEYGM-------------GIE---- 117
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
K D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 118 ----KYDNEGRFLRADFGDVSIVSVYHPSGTSGDE-RQDFKMIWLEDFQKYVVELQKSRP 172
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W L F D FR +P++
Sbjct: 173 NLILCGDYNICHEPIDIHDPIRN-AKNSGFLPEEREWMTRFL---SAGFTDTFRFLNPDK 228
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
+E YT W + N G RID+ + +
Sbjct: 229 QE-YTWWSYRFNSRSKNKGWRIDYCMVS 255
>gi|76810233|ref|YP_334150.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710b]
gi|76579686|gb|ABA49161.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710b]
Length = 322
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 136/329 (41%), Gaps = 76/329 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I T+NVN L R + L D D++C QE K+ ++ + + A GY S+F+
Sbjct: 65 MRIATWNVNSLNVRKQH---VLDWLAQSDVDVLCLQELKIPDEKFPREALEAAGYRSWFA 121
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R PF T++ + + G ED ++
Sbjct: 122 -------GQKTYNGVAILARASLPFDETDIV------------------RNIPGFED-AQ 155
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
L+ +G +++ Y P + D+ + +K+Q+ LQ + L +
Sbjct: 156 QRLIAATIDGVRIVS---------AYFPNGQALDSDKFVYKMQWLDALQAWLKDELQRYP 206
Query: 181 RIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS-KHPER 235
++ ++GD NIAP D D G + + R F + LV G F D FR + PE+
Sbjct: 207 KLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHF-AQLVALG--FVDAFRRFEQPEK 263
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
+T W A + N G RIDHIL + P L + +C V+
Sbjct: 264 --TFTWWDYRMLAFRRNAGLRIDHILLS-PAL-------AETCTSCTVDRV--------- 304
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYMCLG 324
PR T + SDH PV LG
Sbjct: 305 -----PR------TWEQPSDHTPVVAQLG 322
>gi|456825500|gb|EMF73896.1| exodeoxyribonuclease III [Leptospira interrogans serovar Canicola
str. LT1962]
Length = 254
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 116/281 (41%), Gaps = 50/281 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + + D ICFQETK + ++ L GY F
Sbjct: 1 MKFISLNCNGIRSSLEK--GLADYIRNTKPDFICFQETKANQDQVPPSLWEEGGYTPVFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA L + + KI+ G+ D
Sbjct: 59 SAE-----KKGYSGVAV-------------------------LYKKTPEKIIIGIGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D +R K++F + QK +
Sbjct: 86 ---PFFDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I V GD+NIA D D + + F R W L + D FR +P+++
Sbjct: 142 NIIVCGDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
E Y+ W GA N G RID+ K +++SH+
Sbjct: 199 E-YSWWTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 235
>gi|392398112|ref|YP_006434713.1| exodeoxyribonuclease III [Flexibacter litoralis DSM 6794]
gi|390529190|gb|AFM04920.1| exodeoxyribonuclease III [Flexibacter litoralis DSM 6794]
Length = 258
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 124/298 (41%), Gaps = 52/298 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNG+R + + L +ADIIC QE K+ + + L + GYES++
Sbjct: 1 MKIITYNVNGIRAALKK--DFSGWLKEINADIICLQEIKIEEKLVDKALFESLGYESYWF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A ++K PV+ E+G
Sbjct: 59 SAQ-----KKGYSGTAILTKIK----------PVSVEKG--------------------- 82
Query: 121 DELLKIDSEGRCVITDHG----HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
++ + D EGR + + F + NVY P S + +R ++K Q+ ++ E +
Sbjct: 83 SDMQQSDEEGRVLKANFDVNGVSFSVINVYIPSGSSGE-LRQEYKYQWLEEFEEYLEKVR 141
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKH 232
+ + I V GD NI ID + + + F R W E G D FR+ +
Sbjct: 142 SKQKNIVVCGDYNICHKEIDIHNPKSNKKSSGFLPEERKWLDDY--EKKG-MIDAFRNFN 198
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 290
E Y+ W N G RID+ + P D Q + V H + C +L+
Sbjct: 199 QEPHN-YSWWTYRNQCRAKNKGWRIDYHFVSAPFSEYMTDCQILSEVV-HSDHCPVLL 254
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 137/336 (40%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSEGQLDLEL---KGYYQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRANARKNNAGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
++ EGSDH PV + L
Sbjct: 235 ---------------------SQTEGSDHCPVVLFL 249
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 118/270 (43%), Gaps = 57/270 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNG+R + + G + L DI QETK +L ++ +GY S+F
Sbjct: 97 LKLCSWNVNGVRAWLGKEG--LEYLKKEQPDIFAIQETKCSDSKLPPEMKSVEGYHSYFL 154
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA ++K P+ + G G+E
Sbjct: 155 AG-----DQEGYSGVALLAKIK----------PLDVKYGI-------------GME---- 182
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
K D EGR + + F L VY P A + VR+ +++++ F K E
Sbjct: 183 ----KHDKEGRVITAEFDKFYLVAVYVPNA-GKKLVRLDYRMEWDKDFRAYLKELE---- 233
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAK------NEFRIWFRSMLVESGGSFFDVFRSK 231
+ + + GD+N+A ID A P K E R F ++L ESG F D FR
Sbjct: 234 AKKHVVLCGDMNVAHQEIDL--ANPKTNKKNAGFTQEERDGFTALL-ESG--FVDSFRHL 288
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHIL 261
+P+++ AYT W A N G R+D+ +
Sbjct: 289 YPDKKGAYTFWTYMMNARAKNVGWRLDYFI 318
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 123/276 (44%), Gaps = 68/276 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-EEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMITVYTPNSKDE-LQRLDYRMVWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L+ESG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLESG--FTDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
FR +P+ AY+ W A + N G RID+ + +
Sbjct: 186 FRYFYPDLEHAYSWWSYRANARKNNTGWRIDYFIVS 221
>gi|238561644|ref|ZP_00441777.2| exodeoxyribonuclease III [Burkholderia mallei GB8 horse 4]
gi|254200314|ref|ZP_04906680.1| exodeoxyribonuclease III [Burkholderia mallei FMH]
gi|254209389|ref|ZP_04915735.1| exodeoxyribonuclease III [Burkholderia mallei JHU]
gi|147749910|gb|EDK56984.1| exodeoxyribonuclease III [Burkholderia mallei FMH]
gi|147750162|gb|EDK57233.1| exodeoxyribonuclease III [Burkholderia mallei JHU]
gi|238524267|gb|EEP87701.1| exodeoxyribonuclease III [Burkholderia mallei GB8 horse 4]
Length = 269
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 136/329 (41%), Gaps = 76/329 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I T+NVN L R + L D D++C QE K+ ++ + + A GY S+F+
Sbjct: 12 MRIATWNVNSLNVRKQH---VLDWLAQSDVDVLCLQELKIPDEKFPREALEAAGYRSWFA 68
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R PF T++ + + G ED ++
Sbjct: 69 -------GQKTYNGVAILARASLPFDETDIV------------------RNIPGFED-AQ 102
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
L+ +G +++ Y P + D+ + +K+Q+ LQ + L +
Sbjct: 103 QRLIAATIDGVRIVS---------AYFPNGQALDSDKFVYKMQWLDALQAWLKDELQRYP 153
Query: 181 RIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS-KHPER 235
++ ++GD NIAP D D G + + R F + LV G F D FR + PE+
Sbjct: 154 KLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHF-AQLVALG--FVDAFRRFEQPEK 210
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
+T W A + N G RIDHIL + P L + +C V+
Sbjct: 211 --TFTWWDYRMLAFRRNAGLRIDHILLS-PAL-------AETCTSCTVDRV--------- 251
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYMCLG 324
PR T + SDH PV LG
Sbjct: 252 -----PR------TWEQPSDHTPVVAQLG 269
>gi|406897912|gb|EKD41704.1| hypothetical protein ACD_73C00569G0001 [uncultured bacterium]
Length = 250
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 118/265 (44%), Gaps = 54/265 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + S ADIIC QETK +++ DL + D +++
Sbjct: 1 MKMISWNVNGIRSILGK--GFLDFVGSSCADIICLQETKAHPEQV--DLTLNDYPHHYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A FC+V+ P+A++ G G+E+
Sbjct: 57 SAI-----KKGYSGTAIFCKVQ----------PIASQLGI-------------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLC 177
D+EGR + + + L NVY P A E T R+++ F + L+K L
Sbjct: 87 ------DNEGRVITLEFSDYYLVNVYTPNAQRELTRLDYRMKWDADFLNYLKK-----LE 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPE 234
+ + GDLN+A ID + + F R S ++ESG F D FR +
Sbjct: 136 SHKPVIFCGDLNVAHKEIDLANPKTNQGNAGFTPQERDGFSKILESG--FVDTFRLFN-N 192
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDH 259
YT W GA N G RID+
Sbjct: 193 SGGFYTWWSYMAGARPRNIGWRIDY 217
>gi|393722627|ref|ZP_10342554.1| exodeoxyribonuclease III Xth [Sphingomonas sp. PAMC 26605]
Length = 256
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 130/327 (39%), Gaps = 76/327 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYN+NG++ R+ + L + L D++C QE K + + GY +
Sbjct: 1 MKIVTYNINGIKARLPR---LLEYLAEQQPDVVCLQELKTSNETFPEADIRDAGYGVLW- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ ++GVA + + P V + G G E S+ +E
Sbjct: 57 ------HGQKSWNGVAILAKGQDP---------VERQRGLAGEPEDEHSRYLEA------ 95
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ID ++ ++Y P + + + +KL++ L KR LL +
Sbjct: 96 ----EIDG-----------LVVASIYLPNGNPQPGPKFDYKLRWIDRLAKRARDLLAEEL 140
Query: 181 RIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD N+ P D R + E R FR++L + + D R++HP
Sbjct: 141 PVVLAGDYNVIPNDDDTYSVRAMQTDALMQPESRAGFRTLLAQ---GWTDALRTRHPG-G 196
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+T W GA Q + G RIDH+L + + + + V++ DY+
Sbjct: 197 GVWTFWDYQAGAWQRDAGFRIDHLLLS--------PIAADRLIDAGVDK-----DYR--- 240
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL 323
R + SDHAP + L
Sbjct: 241 ------------AREKASDHAPTWATL 255
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 117/269 (43%), Gaps = 56/269 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNG+R + + G L S DADI QETK ++ ++ D+ GY +
Sbjct: 1 MKYVSWNVNGIRACLKK-GFLESF-KSLDADIFALQETKAQKDQIDLDI---PGYTLY-- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T+D + GYSG A R+K P++ G G+E++
Sbjct: 54 ---TNDAIKKGYSGTAILTRMK----------PLSVSYGI-------------GIEEY-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-----FL 175
D EGR + + + Y P + E RI ++++ WE +L
Sbjct: 86 ------DQEGRVITLEFEDYYFVPCYTPNSKKE-LARIDYRME--------WEDAFLAYL 130
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPE 234
+ + + GDLN+A ID + + F RS + E + D FR +P+
Sbjct: 131 DALNKPVILCGDLNVAHHEIDLKNPSSNHHNAGFSDQERSKMTELLSHGYIDTFRYLYPD 190
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+++AYT W + + N G RID+ + +
Sbjct: 191 KKDAYTWWSYMFKSRERNAGWRIDYFIVS 219
>gi|374723629|gb|EHR75709.1| exodeoxyribonuclease III [uncultured marine group II euryarchaeote]
Length = 259
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 124/327 (37%), Gaps = 74/327 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+ V++NVNG+R + + + DS DAD+ QE + ++L DGYE
Sbjct: 1 MRFVSWNVNGIRAAIRK--GIDGYFDSLDADVWMLQEVRCLPEQLPKGWNWPDGYEVNLH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT R +P S G I G
Sbjct: 59 AAE-----KKGYSGVATLSR--NPTDSVATG---------------KGGSIDLG------ 90
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR ++T HG N Y P +++ R FK + + L Q
Sbjct: 91 ------DTEGRVIVTQHGELTCINTYLPSGSNKEE-RQAFKEAWMEEWRDFLRPYLSQST 143
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ V GDLNIA D + + + F R WF +L + + DVFR E
Sbjct: 144 PVVVCGDLNIAHTEDDIWNPKGNAKSSGFLPHEREWFTELLND---GWHDVFRQHVGEGE 200
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 296
+ ++ W + A + G RID+ L +D + F + +
Sbjct: 201 KIFSWWSNRGQARIKDRGWRIDYFLL--------NDAAAERFESIRIER----------- 241
Query: 297 PGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+GG+ SDHAPV + L
Sbjct: 242 -------QGGLDV----SDHAPVILDL 257
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 125/275 (45%), Gaps = 53/275 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V + G + +FDAD C QE KL+ +++ + DGY +++
Sbjct: 1 MKFVSWNVNGLRA-VREKG-FEDIFKNFDADAFCLQEIKLQENQIE---LHFDGYYEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + + K P+ G G+E+
Sbjct: 56 YA-----NKKGYSGTAIYTKHK----------PIDVHYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ ++ + VY P A E R+ ++ ++ ++ ++ L + +
Sbjct: 86 ------DMEGRLITLEYENYYIATVYTPNAQPE-LARLAYRQKWEDDFREYFK-KLDEKK 137
Query: 181 RIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD+N+A ID + P F+ E + +M + SG F D FR +P++
Sbjct: 138 PVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKF--TMFLNSG--FIDTFRYFYPDK 193
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+ Y+ W A + N G RID+ C L +K
Sbjct: 194 TDEYSWWSYRFNARKNNAGWRIDY-FCVSDRLKEK 227
>gi|431779197|ref|ZP_19567393.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
gi|430642462|gb|ELB78239.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
Length = 250
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 119/270 (44%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V++ + ++ DAD C QETKL+ ++ DL GY +++
Sbjct: 1 MKFISWNVNGLRAIVNK--NFLEVFHELDADFFCLQETKLQAGQIDLDL---PGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + ++ + + +
Sbjct: 56 YAE-----RKGYSGTAIFAKKPALNATYGMGIDIH------------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQKRWEFLL 176
D+EGR + ++ F L Y P + SE R+ ++L+ F++ L+ L
Sbjct: 86 ------DTEGRLITLEYSDFFLVTCYTPNSQSE-LKRLDYRLEWEETFYNYLEN-----L 133
Query: 177 CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHP 233
+ + + V GDLN+A ID + + F R S L+++G F D FR +P
Sbjct: 134 KKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNG--FIDTFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+ Y+ W + + N G RID+ L +
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTS 221
>gi|116328536|ref|YP_798256.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331264|ref|YP_800982.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116121280|gb|ABJ79323.1| Exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116124953|gb|ABJ76224.1| Exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 254
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 109/268 (40%), Gaps = 47/268 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+++ N NG+R + + L + D ICFQETK ++++ L GY F
Sbjct: 1 MKLISLNCNGIRSSLGK--GLSDYIRDRKPDFICFQETKATQEQIPPSLWEEGGYTPVFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA L + KI GL D
Sbjct: 59 SAE-----KKGYSGVAV-------------------------LYKKPPQKITIGLGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ F L+N Y P + + VR K++F + QK +
Sbjct: 86 ---PFFDKEGRSIYLEYPDFALWNSYFPSGTTGE-VRQAVKMKFLDLFQKEAAKRRKKQP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD+NIA D D + + F R W + +E G + D FR +PE++
Sbjct: 142 NILLCGDINIAHTPQDIHDPKGNAKSSGFLPEEREWL-TQFLEKG--WVDTFRYLYPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAG 264
E Y+ W GA N G RID+
Sbjct: 199 E-YSWWTFRAGARAKNKGWRIDYFFVTA 225
>gi|269960966|ref|ZP_06175335.1| exodeoxyribonuclease III [Vibrio harveyi 1DA3]
gi|269834185|gb|EEZ88275.1| exodeoxyribonuclease III [Vibrio harveyi 1DA3]
Length = 268
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 53/282 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR R+ Q L+ L+D D+I QE K+ + + V A GY+ +F
Sbjct: 1 MKVISFNINGLRARLHQ---LQALIDKHQPDVIGLQEIKVHDEAFPIEDVEAMGYKVYFH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGF-TGLLETSGSKIMEGLEDFS 119
G+ + GVA C+ + P++ ++GF T E IM ED +
Sbjct: 58 -------GQKAHYGVAMLCKQE----------PISVQKGFPTDNEEHQKRMIMATFEDEN 100
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADS-EDTVRIQFKLQFFHVLQKRWEFLLCQ 178
++++ + N Y P+ D+ + +K QF+ L
Sbjct: 101 EEKV-----------------TVLNGYFPQGDNIAHETKYPYKRQFYKDLMTYLNNHHSN 143
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAK----------NEFRIWFRSMLVESGGSFFDVF 228
++ V+GD+NI+P D P+ + E R W +++L F D F
Sbjct: 144 DEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEEREWLQTLL---DWGFEDTF 200
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
R+ HPE + ++ + + N G RID IL A P L +K
Sbjct: 201 RNLHPEVDDRFSWFDYRSRGFDDNRGLRIDVIL-ATPSLAKK 241
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFMK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F K+ L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMEWEDDFRTYIKQ----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R ++E G F D +R +
Sbjct: 136 EKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FVDTYRHLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|336435960|ref|ZP_08615673.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008000|gb|EGN38019.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
Length = 250
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 72/275 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V + + + DADI C QETK++ +L +L DGY +++
Sbjct: 1 MKLVSWNVNGLRACVQK--GFQDIFREIDADIFCVQETKMQEGQLDLEL---DGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P+ G G+E+
Sbjct: 56 YAV-----KKGYSGTAVFTKQE----------PIGVTYGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-----FL 175
D EGR + + F VY P + +E R+ +++ RWE +L
Sbjct: 86 ------DQEGRVITCEFEDFYFVTVYTPNSQNE-LKRLDYRM--------RWEDDFRAYL 130
Query: 176 --LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFF 225
L + + + V GD+N+A A ID R +AG D + +F + L+++G F
Sbjct: 131 KALDEKKPVVVTGDMNVAHAEIDLKNPKSNRQNAGFTDEERGKF-----TELLDAG--FI 183
Query: 226 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 260
D FR +P++ Y+ W A + N G RID+
Sbjct: 184 DTFRYFYPDQEGIYSWWSYRFKAREKNAGWRIDYF 218
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F K+ L
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNS-KRGLERLDYRMEWEDDFRTYIKQ----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E + R ++E G F D +R +
Sbjct: 136 EKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FVDTYRHLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
P + AY+ W GA N G R+D+ + +
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 124/276 (44%), Gaps = 68/276 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF DAD C QETK++ + DL GYE
Sbjct: 1 MRFVSWNVNGLR------AALKKGFMESFKELDADAFCLQETKMQEGQAILDL---PGYE 51
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F R+K P++ G G+E
Sbjct: 52 QYFYSAE-----KKGYSGTAIFTRLK----------PLSVSYGI-------------GIE 83
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL 176
+ D+EGR + + L VY P + + +R+ +++ + + FLL
Sbjct: 84 EH--------DNEGRVITMEFEDVYLVTVYTPNSKN-GLLRLDYRMVWEDAFRA---FLL 131
Query: 177 -CQGRRIFVV-GDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227
+ ++ VV GDLN+A ID R +AG +E R F +L F D
Sbjct: 132 DLRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFTELL---AAGFVDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
FR+ +P+ AYT W A + N G RID+ L +
Sbjct: 186 FRALYPDLTGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 117/273 (42%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNGLR + + +AD+ C QE KL+ +++ DL GY ++++
Sbjct: 2 LKLISWNVNGLRAVMKK--GFMDFFTEVNADVFCLQEIKLQEGQIEMDL---PGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ + G GLE+
Sbjct: 57 YAH-----KKGYSGTAIFTKQK----------PLSIQYGL-------------GLEE--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQKRWE 173
+D+EGR + + ++ + VY P + +R+ ++L F L
Sbjct: 86 -----LDTEGRIITLEFDNYYVITVYTPNS-QHGLLRLDYRLLWEDAILSFVKALDNHKP 139
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRS 230
LLC GDLN+A ID + + + F + R + +E G F D FR
Sbjct: 140 VLLC--------GDLNVAHEEIDLRNPKANKKNSGFTLEERGKMTQFLEKG--FVDTFRH 189
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
HPE Y+ W + + N G RID+ L +
Sbjct: 190 FHPEEEGHYSWWSYRSNCREKNVGWRIDYFLAS 222
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 132/335 (39%), Gaps = 98/335 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L DL GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSEGQLDLDL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-EEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMITVYTPNSKDE-LQRLDYRMVWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 228
L + + + V GDLN+A ID R +AG +E R F +L F D F
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAG---FTDEERGKFTELL---AAGFTDTF 186
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288
R +P+ AY+ W A + N G RID+ + + D + H
Sbjct: 187 RHFYPDLEHAYSWWSYRANARKNNTGWRIDYFVVSNALDKYLVDAEIH------------ 234
Query: 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+ EGSDH PV + L
Sbjct: 235 --------------------AQTEGSDHCPVVLFL 249
>gi|420263761|ref|ZP_14766397.1| exodeoxyribonuclease [Enterococcus sp. C1]
gi|394769203|gb|EJF49066.1| exodeoxyribonuclease [Enterococcus sp. C1]
Length = 250
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 127/300 (42%), Gaps = 57/300 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + ++ ++ DAD C QETKL+ +++ DL GY +++
Sbjct: 1 MKFISWNVNGLRAIVKK--NFSEVFEALDADFFCLQETKLQEGQIELDL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P S L G+E+
Sbjct: 56 YAE-----KKGYSGTAIFA--KEPALSVRYGL---------------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQKRWEFLLC 177
D+EGR + ++ F L Y P + +E R+ ++ F L + L
Sbjct: 86 ------DTEGRVITLEYPEFFLITCYTPNSQNELRRLDYRMTWEDAFLAYLTE-----LK 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 233
Q + + + GDLN+A ID + + F R F ++L F D FR +P
Sbjct: 135 QQKSVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREKFSTLL---AAGFTDTFRYFYP 191
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 293
+ Y+ W A + N G RID+ + + + D + H + + C + +D K
Sbjct: 192 DAEGIYSWWSYRFNARKNNAGWRIDYFVVSDNLNERLLDAKIHTDIIGS-DHCPVELDLK 250
>gi|150951488|ref|XP_001387814.2| AP endonuclease [Scheffersomyces stipitis CBS 6054]
gi|149388636|gb|EAZ63791.2| AP endonuclease [Scheffersomyces stipitis CBS 6054]
Length = 482
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 132/329 (40%), Gaps = 70/329 (21%)
Query: 1 MKIVTYNVNGLRQRV-----SQFGSLRKLL-DSFDADIICFQETKLRRQELKS--DLVMA 52
++ VT+NVNG++ +QF LL S ADII QE KL + S ++
Sbjct: 24 IRYVTFNVNGVKTLFNYYPWTQFNQDYDLLFSSLQADIITLQELKLSSSNISSVKNIGHL 83
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEV---ALPVAAEEGFTGLLET--S 107
Y+SF S + + GYSGV F R+ S+ V + AEEG TG L + S
Sbjct: 84 PHYKSFISIPKV----KRGYSGVGLFVRIPREEESSAVRRNLQVIKAEEGITGYLSSGLS 139
Query: 108 GSKIMEGL----------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
G L +D L++DSEGRCV + + ++F +Y P +
Sbjct: 140 GDVCYRDLPESESIGGYPDDLDSVMGLELDSEGRCVCIELACNLVVFALYCPANSMGEDE 199
Query: 157 RIQFKLQFFHVLQKR-WEFLLCQGRRIFVVGDLNIAPAAIDRCDA--------------- 200
F+L F L KR + G+ + V+GD+N++ ID +
Sbjct: 200 GEAFRLNFLKNLLKRCYNLKYKHGKEVIVMGDINVSLDLIDSAEGIDDRQKQRLVLPKTD 259
Query: 201 GPDFAKNEFRIWF--------RSMLVESGGS------------------FFDVFRSKHPE 234
G DF + F R++L + +D R
Sbjct: 260 GIDFETINYDECFNFKRSTRARALLNQYTIQSLQHNLSLDRHPDYEQQFLYDTTRYLQGR 319
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCA 263
R + YT W + + N+G+RID IL +
Sbjct: 320 RMQMYTVWNTLNSSRAINFGSRIDLILAS 348
>gi|428772210|ref|YP_007163998.1| exodeoxyribonuclease III [Cyanobacterium stanieri PCC 7202]
gi|428686489|gb|AFZ46349.1| Exodeoxyribonuclease III [Cyanobacterium stanieri PCC 7202]
Length = 264
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 117/269 (43%), Gaps = 45/269 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ T+NVN +R R ++K L D DI+C QETK+ Q+ + GY+ +
Sbjct: 1 MKVATWNVNSIRTREDH---VKKWLVDQDIDILCLQETKVIDQDFPRQSFLDLGYQVYIF 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA F K P S + GF G+L+ ++
Sbjct: 58 -------GQKAYNGVAIFS--KKPLESIDY--------GFNGILK-------------NE 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
++ +D + R + + + N+Y P +S + + ++KLQ+ +LQ+ + Q
Sbjct: 88 KKVGNLDEQKRVISGVINNIRIVNLYVPNGNSLGSEKYEYKLQWLALLQEYLTTIDPQNT 147
Query: 181 RIFVVGDLNIAPAAIDRCDAGPD------FAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ V GD NIA D+ P+ A R + +L G DVFR HPE
Sbjct: 148 DLLVCGDFNIALE--DKDIYKPEGREKHVMATPTEREALKKVL---GLGLEDVFRKFHPE 202
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDHILCA 263
++ W G N G RIDHI +
Sbjct: 203 EGH-FSWWDYRQGGFAKNRGWRIDHIYLS 230
>gi|418670214|ref|ZP_13231586.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|421119287|ref|ZP_15579611.1| exodeoxyribonuclease III [Leptospira interrogans str. Brem 329]
gi|421136683|ref|ZP_15596781.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410019141|gb|EKO85968.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410347917|gb|EKO98768.1| exodeoxyribonuclease III [Leptospira interrogans str. Brem 329]
gi|410753985|gb|EKR15642.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
Length = 254
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 50/281 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + + D ICFQETK + ++ L GY F
Sbjct: 1 MKFISLNCNGIRSSLEK--GLADYIRNTKPDFICFQETKANQDQVPPSLWEEGGYTPVFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA L + KI+ G+ D
Sbjct: 59 SAE-----KKGYSGVAV-------------------------LYKKPPEKIIIGIGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D +R K++F + QK +
Sbjct: 86 ---PFFDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I V GD+NIA D D + + F R W L + D FR +P+++
Sbjct: 142 NIIVCGDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
E Y+ W GA N G RID+ K +++SH+
Sbjct: 199 E-YSWWTFRAGARAKNKGWRIDYFFVTEEL---KKNVKSHS 235
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKSLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+++EGSDH PV + L
Sbjct: 235 ---------------------SQIEGSDHCPVVLFL 249
>gi|303328283|ref|ZP_07358721.1| exodeoxyribonuclease III [Desulfovibrio sp. 3_1_syn3]
gi|302861613|gb|EFL84549.1| exodeoxyribonuclease III [Desulfovibrio sp. 3_1_syn3]
Length = 268
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 115/275 (41%), Gaps = 51/275 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+V++NVNGLR ++ + DA I+ QETK ++LK +L +G+E+ +S
Sbjct: 3 IKLVSWNVNGLRALSAK--PEWEWFARTDAQIVALQETKAHPEQLKEELASPEGWEAHWS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA F R+ +P + LP +G
Sbjct: 61 SSHV----KKGYSGVAVFSRM-TPL-AVRAELPDPQWQG--------------------- 93
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT----------VRIQFKLQFFHVLQK 170
EGR + + F FN Y P +E+ R+ +K+ FF
Sbjct: 94 --------EGRLLHLEFPDFHFFNGYFPNGGAEELDENGKPTGRFKRVPYKMGFFEAFLN 145
Query: 171 RWEFLLC-QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVF 228
E C + + I V GD NIA AID + F R+ L + + D F
Sbjct: 146 YAE--ECRKSKPIVVCGDFNIAHQAIDLARPKQNVKNTGFLPEERAFLDRFTAMGYVDTF 203
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
R H ++ + Y+ W T A + N G RID+ +
Sbjct: 204 RKVHGDQPDQYSWWSYKTRAREKNIGWRIDYFFVS 238
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 44/264 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR +++ + + DADI C QETK++ +L+ DL Y+ +++
Sbjct: 1 MKFVSWNVNGLRACMNK--GFMETFQTLDADIFCLQETKMQPHQLELDL---PRYKQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P+ G G+E+
Sbjct: 56 SAE-----KKGYSGTAIFTKVE----------PLNVSYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + + F + VY P + E R+ +++Q+ + + L + +
Sbjct: 86 ------DHEGRVITLEFDKFFMVCVYTPNSKRE-LERLDYRMQWEDAF-RNYLVELNKQK 137
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 239
+ + GDLN+A ID + + F RS + E F D FR +P++ Y
Sbjct: 138 PVVMCGDLNVAHKEIDLKNPKTNRRSAGFTDEERSKMTELLQAGFVDTFRYLYPDKTSIY 197
Query: 240 TCWPSNTGAEQFNYGTRIDHILCA 263
+ W A + N G RID+ + +
Sbjct: 198 SWWSYMRKARENNAGWRIDYFIVS 221
>gi|345893652|ref|ZP_08844445.1| exodeoxyribonuclease III [Desulfovibrio sp. 6_1_46AFAA]
gi|345045906|gb|EGW49804.1| exodeoxyribonuclease III [Desulfovibrio sp. 6_1_46AFAA]
Length = 268
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 112/265 (42%), Gaps = 31/265 (11%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+V++NVNGLR ++ + DA I+ QETK ++LK +L +G+E+ +S
Sbjct: 3 IKLVSWNVNGLRALSAK--PEWEWFARTDAQIVALQETKAHPEQLKEELASPEGWEAHWS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA F R+ E+ P EG LE G G F
Sbjct: 61 SSHV----KKGYSGVAVFSRMTPLAVRAELPDPQWQGEGRLLHLEFPGFHFFNGY--FPN 114
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-QG 179
++D G+ G F R+ +K+ FF E C +
Sbjct: 115 GGAEELDENGKPT----GRF---------------KRVPYKMGFFEAFLNYAE--ECRKS 153
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREA 238
+ I V GD NIA AID + F R+ L + + D FR H ++ +
Sbjct: 154 KPIVVCGDFNIAHQAIDLARPKQNVKNTGFLPEERAFLDRFTAMGYVDTFRKVHGDQPDQ 213
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCA 263
Y+ W T A + N G RID+ +
Sbjct: 214 YSWWSYKTRAREKNIGWRIDYFFVS 238
>gi|417770005|ref|ZP_12417918.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Pomona]
gi|418682137|ref|ZP_13243357.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|418703940|ref|ZP_13264822.1| exodeoxyribonuclease III [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418730649|ref|ZP_13289143.1| exodeoxyribonuclease III [Leptospira interrogans str. UI 12758]
gi|400326147|gb|EJO78416.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|409948022|gb|EKN98013.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Pomona]
gi|410766424|gb|EKR37109.1| exodeoxyribonuclease III [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410774858|gb|EKR54862.1| exodeoxyribonuclease III [Leptospira interrogans str. UI 12758]
gi|455670418|gb|EMF35400.1| exodeoxyribonuclease III [Leptospira interrogans serovar Pomona
str. Fox 32256]
gi|455789000|gb|EMF40941.1| exodeoxyribonuclease III [Leptospira interrogans serovar Lora str.
TE 1992]
Length = 254
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 108/267 (40%), Gaps = 47/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + + D ICFQETK + ++ L GY F
Sbjct: 1 MKFISLNCNGIRSSLEK--GLADYIRNTKPDFICFQETKANQDQVPPSLWEEGGYTPVFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA L + KI+ G+ D
Sbjct: 59 SAE-----KKGYSGVAV-------------------------LYKKPPEKIIIGIGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D +R K++F + QK +
Sbjct: 86 ---PFFDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I V GD+NIA D D + + F R W L + D FR +P+++
Sbjct: 142 NIIVCGDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWIDTFRYLYPDKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
E Y+ W GA N G RID+
Sbjct: 199 E-YSWWTFRAGARAKNKGWRIDYFFVT 224
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 126/304 (41%), Gaps = 65/304 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR + + D DADII QE KL +L+ D GY ++++
Sbjct: 1 MKFVSWNVNGLRAVMGK--GFMDFFDGIDADIIGLQEIKLSEGQLEWD---KPGYHAYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S V+ + EE
Sbjct: 56 YAE-----KKGYSGTAVFTK-KEPIS---VSYGIGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEFLLC 177
D EGR + + F Y P + +E R+ ++ F LQK L
Sbjct: 86 ------DHEGRVITLEFEDFYFITCYTPNSQNELKRLDYRMTWEDDFRAYLQK-----LN 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFR 229
+ + + + GDLN+A ID R +AG F E R+ + E F D FR
Sbjct: 135 EKKGVILCGDLNVAHEEIDIKNPKTNRHNAG--FTDEE-----RAKMTELLSAGFVDSFR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 289
+P++ + Y+ W A + N G RID+ + + + D + H V + C I
Sbjct: 188 YFYPDQTDIYSWWSYRFKAREKNAGWRIDYFIVSEDIKDRMKDSKIHTDVMGS-DHCPIE 246
Query: 290 IDYK 293
+D++
Sbjct: 247 LDFE 250
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 138/336 (41%), Gaps = 100/336 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL-- 175
D EGR + + F + VY P + E +R+ +++ + +K +L
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRK---YLKN 132
Query: 176 LCQGRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDV 227
L + + + V GDLN+A ID R +AG D + +F + L++SG F D
Sbjct: 133 LEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDT 185
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 287
FR +P + Y+ W A + N G RID+ + + D + H
Sbjct: 186 FRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH----------- 234
Query: 288 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 323
+++EGSDH PV + L
Sbjct: 235 ---------------------SQIEGSDHCPVVLFL 249
>gi|53724173|ref|YP_103357.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 23344]
gi|121601562|ref|YP_993558.1| exodeoxyribonuclease III [Burkholderia mallei SAVP1]
gi|124384052|ref|YP_001029013.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10229]
gi|126440535|ref|YP_001059656.1| exodeoxyribonuclease III [Burkholderia pseudomallei 668]
gi|126449755|ref|YP_001081066.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10247]
gi|126452052|ref|YP_001066939.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106a]
gi|134277971|ref|ZP_01764686.1| exodeoxyribonuclease III [Burkholderia pseudomallei 305]
gi|167003440|ref|ZP_02269226.1| exodeoxyribonuclease III [Burkholderia mallei PRL-20]
gi|167720390|ref|ZP_02403626.1| exodeoxyribonuclease III [Burkholderia pseudomallei DM98]
gi|167739381|ref|ZP_02412155.1| exodeoxyribonuclease III [Burkholderia pseudomallei 14]
gi|167816592|ref|ZP_02448272.1| exodeoxyribonuclease III [Burkholderia pseudomallei 91]
gi|167846507|ref|ZP_02472015.1| exodeoxyribonuclease III [Burkholderia pseudomallei B7210]
gi|167895086|ref|ZP_02482488.1| exodeoxyribonuclease III [Burkholderia pseudomallei 7894]
gi|167903470|ref|ZP_02490675.1| exodeoxyribonuclease III [Burkholderia pseudomallei NCTC 13177]
gi|167911721|ref|ZP_02498812.1| exodeoxyribonuclease III [Burkholderia pseudomallei 112]
gi|167919720|ref|ZP_02506811.1| exodeoxyribonuclease III [Burkholderia pseudomallei BCC215]
gi|217421040|ref|ZP_03452545.1| exodeoxyribonuclease III [Burkholderia pseudomallei 576]
gi|237813050|ref|YP_002897501.1| exodeoxyribonuclease III [Burkholderia pseudomallei MSHR346]
gi|242317870|ref|ZP_04816886.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106b]
gi|254178518|ref|ZP_04885173.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 10399]
gi|254184341|ref|ZP_04890931.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1655]
gi|254191371|ref|ZP_04897875.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|254195861|ref|ZP_04902287.1| exodeoxyribonuclease III [Burkholderia pseudomallei S13]
gi|254261312|ref|ZP_04952366.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710a]
gi|254297001|ref|ZP_04964454.1| exodeoxyribonuclease III [Burkholderia pseudomallei 406e]
gi|254357938|ref|ZP_04974211.1| exodeoxyribonuclease III [Burkholderia mallei 2002721280]
gi|386861112|ref|YP_006274061.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1026b]
gi|403519366|ref|YP_006653500.1| exodeoxyribonuclease III [Burkholderia pseudomallei BPC006]
gi|418533551|ref|ZP_13099416.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1026a]
gi|418540395|ref|ZP_13105940.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1258a]
gi|418546643|ref|ZP_13111846.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1258b]
gi|52427596|gb|AAU48189.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 23344]
gi|121230372|gb|ABM52890.1| exodeoxyribonuclease III [Burkholderia mallei SAVP1]
gi|124292072|gb|ABN01341.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10229]
gi|126220028|gb|ABN83534.1| exodeoxyribonuclease III [Burkholderia pseudomallei 668]
gi|126225694|gb|ABN89234.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106a]
gi|126242625|gb|ABO05718.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10247]
gi|134251621|gb|EBA51700.1| exodeoxyribonuclease III [Burkholderia pseudomallei 305]
gi|148027065|gb|EDK85086.1| exodeoxyribonuclease III [Burkholderia mallei 2002721280]
gi|157807529|gb|EDO84699.1| exodeoxyribonuclease III [Burkholderia pseudomallei 406e]
gi|157939043|gb|EDO94713.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|160699557|gb|EDP89527.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 10399]
gi|169652606|gb|EDS85299.1| exodeoxyribonuclease III [Burkholderia pseudomallei S13]
gi|184214872|gb|EDU11915.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1655]
gi|217396452|gb|EEC36469.1| exodeoxyribonuclease III [Burkholderia pseudomallei 576]
gi|237503790|gb|ACQ96108.1| exodeoxyribonuclease III [Burkholderia pseudomallei MSHR346]
gi|242141109|gb|EES27511.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106b]
gi|243061042|gb|EES43228.1| exodeoxyribonuclease III [Burkholderia mallei PRL-20]
gi|254220001|gb|EET09385.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710a]
gi|385361126|gb|EIF67023.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1026a]
gi|385362033|gb|EIF67884.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1258a]
gi|385363872|gb|EIF69626.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1258b]
gi|385658240|gb|AFI65663.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1026b]
gi|403075009|gb|AFR16589.1| exodeoxyribonuclease III [Burkholderia pseudomallei BPC006]
Length = 258
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 136/329 (41%), Gaps = 76/329 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I T+NVN L R + L D D++C QE K+ ++ + + A GY S+F+
Sbjct: 1 MRIATWNVNSLNVRKQH---VLDWLAQSDVDVLCLQELKIPDEKFPREALEAAGYRSWFA 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R PF T++ + + G ED ++
Sbjct: 58 -------GQKTYNGVAILARASLPFDETDIV------------------RNIPGFED-AQ 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
L+ +G +++ Y P + D+ + +K+Q+ LQ + L +
Sbjct: 92 QRLIAATIDGVRIVS---------AYFPNGQALDSDKFVYKMQWLDALQAWLKDELQRYP 142
Query: 181 RIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRS-KHPER 235
++ ++GD NIAP D D G + + R F + LV G F D FR + PE+
Sbjct: 143 KLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHF-AQLVALG--FVDAFRRFEQPEK 199
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 295
+T W A + N G RIDHIL + P L + +C V+
Sbjct: 200 --TFTWWDYRMLAFRRNAGLRIDHILLS-PAL-------AETCTSCTVDRV--------- 240
Query: 296 KPGNAPRWKGGMSTRLEGSDHAPVYMCLG 324
PR T + SDH PV LG
Sbjct: 241 -----PR------TWEQPSDHTPVVAQLG 258
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 120/281 (42%), Gaps = 65/281 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R V + LD F DADI C QETKL+ +++ DL GY
Sbjct: 1 MKFISWNVNGIRACVG-----KGFLDFFKEVDADIFCLQETKLQEGQIELDL---PGYFQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ R GYSG A F + K P K+M G+
Sbjct: 53 YWNYAE-----RKGYSGTAIFTK-KEPL------------------------KVMYGI-- 80
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEF 174
+ + D EGR + + F VY P + SE R +++ F L K
Sbjct: 81 ----NIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKRLEYRTRWEDDFIDYLTK---- 132
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFR 229
L + + V GD+N+A ID + F K E + S L++SG F D +R
Sbjct: 133 -LDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKF--SKLLDSG--FIDTYR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+P++ Y+ W A + N G RID+ CA L +
Sbjct: 188 YFNPDKEGVYSWWSYRFNARKNNAGWRIDY-FCASKKLEDR 227
>gi|429749865|ref|ZP_19282949.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429166659|gb|EKY08620.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 257
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 117/270 (43%), Gaps = 47/270 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI++YNVNG+R +++ + L S + D++C QE K ++ +++ GY +
Sbjct: 1 MKIISYNVNGIRAALTK--GFAQWLQSANPDVLCLQEIKALETQIPTEVFTQLGYTHQYY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA ++ P E G TG+ D+
Sbjct: 59 HSAE----KKGYSGVAILSKIA----------PKHVEVG-TGI-------------DY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+D EGR + D + ++Y P + D R+ FKL F QK + L +
Sbjct: 89 -----MDKEGRVLRADFEDVSVMSLYLPSGTNPD--RLDFKLTFMDDFQKYIDELKKKVP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NI AID D + + F R W + + +SG F D FR H E
Sbjct: 142 NLVICGDYNICHQAIDIHDPVRNATVSGFLPVERAWIDAFM-KSG--FIDSFRYFHKEPH 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
+ Y+ W A N G RID+ L A P
Sbjct: 199 Q-YSWWSYRANARNNNKGWRIDYHLVATPL 227
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 126/275 (45%), Gaps = 53/275 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V + G + +FDAD C QE KL+ +++ + DGY +++
Sbjct: 1 MKFVSWNVNGLRA-VREKG-FEDIFKNFDADAFCLQEIKLQENQIE---LHFDGYYEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + + K P+ G G+E+
Sbjct: 56 YA-----NKKGYSGTAIYTKHK----------PIDVHYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ ++ + VY P A E R+ ++ ++ ++ ++ L + +
Sbjct: 86 ------DMEGRLITLEYENYYIATVYTPNAQPE-LARLAYRQKWEEDFREYFK-KLDEKK 137
Query: 181 RIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD+N+A ID + P F+ E + ++L+ +G F D FR +P++
Sbjct: 138 PVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKF--TLLLNAG--FIDTFRYFYPDK 193
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+ Y+ W A + N G RID+ C L +K
Sbjct: 194 TDEYSWWSYRFNARKNNAGWRIDY-FCVSDRLKEK 227
>gi|120598407|ref|YP_962981.1| exonuclease III [Shewanella sp. W3-18-1]
gi|146293514|ref|YP_001183938.1| exonuclease III [Shewanella putrefaciens CN-32]
gi|120558500|gb|ABM24427.1| Exodeoxyribonuclease III [Shewanella sp. W3-18-1]
gi|145565204|gb|ABP76139.1| Exodeoxyribonuclease III [Shewanella putrefaciens CN-32]
Length = 270
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 120/283 (42%), Gaps = 61/283 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NGLR R+ Q L+ L+DS DII QETK+ + V A GY+ +
Sbjct: 1 MKIVSFNINGLRSRLHQ---LQALIDSHKPDIIGLQETKVHDEAFPLAEVEAMGYQVHYH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G + GVA +V P ++GF E + +++ G FS+
Sbjct: 58 -------GGKAHYGVAMLSKVA----------PQKIQKGFPSDDEDAQRRMIIGT--FSQ 98
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
+ GR + +FN Y P+ +S D + K +F+ L +
Sbjct: 99 -------ANGRPLT-------VFNGYFPQGESIDHPTKYPAKRKFYQDLMHYLQTNHSND 144
Query: 180 RRIFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSF 224
I ++GD+NI+P +D +C P E R W +++
Sbjct: 145 EDIAIIGDINISPTDLDIGIGEVNRKRWLKTGKCSFQP-----EEREWLKTL---QDWGL 196
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
D FR HPER E Y+ + + N G RID ++ A P L
Sbjct: 197 IDTFRQLHPERTERYSWFDYRSKGFDDNRGLRID-VILATPSL 238
>gi|294635923|ref|ZP_06714368.1| exodeoxyribonuclease III [Edwardsiella tarda ATCC 23685]
gi|451964626|ref|ZP_21917890.1| exodeoxyribonuclease III [Edwardsiella tarda NBRC 105688]
gi|291090755|gb|EFE23316.1| exodeoxyribonuclease III [Edwardsiella tarda ATCC 23685]
gi|451316746|dbj|GAC63252.1| exodeoxyribonuclease III [Edwardsiella tarda NBRC 105688]
Length = 269
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 116/282 (41%), Gaps = 61/282 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++N+NGLR R Q ++ ++ + D+I QETK+ + GY +
Sbjct: 1 MKFISFNINGLRARPHQLAAI---VEKHNPDVIGLQETKVHDDMFPLQDLAPLGYHLHY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA R+ P+A +GF G E + +I+
Sbjct: 57 ------HGQKGHYGVALLTRMA----------PLAVRKGFPGDAEDAQRRIIMA------ 94
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
+ T+ G + N Y P+ +S D ++ K +F+ LQ + L
Sbjct: 95 -----------DIPTEQGVLTVINGYFPQGESRDHPLKFPAKSKFYADLQDYLQQSLTPQ 143
Query: 180 RRIFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSF 224
++ ++GD+NI+PA ID +C P E R W +L
Sbjct: 144 DQVLIMGDMNISPADIDIGIGDESRRRWLRSGKCSFLP-----EERAWMDRLL---SWGL 195
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 266
D +R HPER + ++ + + N G RID +L + P
Sbjct: 196 VDTYRQAHPERDDRFSWFDYRSKGFDDNRGLRIDLLLASQPL 237
>gi|188581164|ref|YP_001924609.1| exodeoxyribonuclease III Xth [Methylobacterium populi BJ001]
gi|179344662|gb|ACB80074.1| exodeoxyribonuclease III Xth [Methylobacterium populi BJ001]
Length = 264
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 107/267 (40%), Gaps = 42/267 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I T+NVN ++QRV G L LD D++C QE K + + + A GY
Sbjct: 1 MRITTWNVNSIKQRV---GHLLGFLDEAKPDVVCLQELKCQDTSFPREEIEAAGYA---- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA V++P T++ G G E ++ +E L
Sbjct: 54 ---VETLGQKAYNGVALL--VRAPLQYTQLL------RGLPGDAEDEQARYIEAL----- 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ EG + + ++Y P + + +KL F L+ L+
Sbjct: 98 -----VHGEGVAPVR------IASIYLPNGNPAPGPKYSYKLAFMARLKAHARALMASED 146
Query: 181 RIFVVGDLNIAPAAIDRCDAGP----DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD N+ P D D E R FR++L E F D R+ P
Sbjct: 147 ALVLAGDFNVIPEPEDAADPAAWTQDALFLPETRRAFRALLAEG---FTDGLRACEPSA- 202
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
YT W G N+G RIDH+L +
Sbjct: 203 GLYTFWDYQAGCWPRNFGIRIDHLLLS 229
>gi|386314195|ref|YP_006010360.1| exodeoxyribonuclease III [Shewanella putrefaciens 200]
gi|319426820|gb|ADV54894.1| exodeoxyribonuclease III [Shewanella putrefaciens 200]
Length = 270
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 120/283 (42%), Gaps = 61/283 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NGLR R+ Q L+ L+DS DII QETK+ + V A GY+ +
Sbjct: 1 MKIVSFNINGLRSRLHQ---LQALIDSHKPDIIGLQETKVHDEAFPLAEVEAMGYQVHYH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G + GVA +V P ++GF E + +++ G FS+
Sbjct: 58 -------GGKAHYGVAMLSKVA----------PQKIQKGFPSDDEDAQRRMIIGT--FSQ 98
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
+ GR + +FN Y P+ +S D + K +F+ L +
Sbjct: 99 -------ANGRPLT-------VFNGYFPQGESIDHPTKYPAKRKFYQDLMHYLQTNHSND 144
Query: 180 RRIFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSF 224
I ++GD+NI+P +D +C P E R W +++
Sbjct: 145 EDIAIIGDINISPTDLDIGIGEVNRKRWLKTGKCSFQP-----EEREWLKTL---QDWGL 196
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
D FR HPER E Y+ + + N G RID ++ A P L
Sbjct: 197 IDTFRQLHPERTERYSWFDYRSKGFDDNRGLRID-VILATPSL 238
>gi|429093317|ref|ZP_19155913.1| Exodeoxyribonuclease III [Cronobacter dublinensis 1210]
gi|429095968|ref|ZP_19158074.1| Exodeoxyribonuclease III [Cronobacter dublinensis 582]
gi|426282308|emb|CCJ84187.1| Exodeoxyribonuclease III [Cronobacter dublinensis 582]
gi|426741729|emb|CCJ82026.1| Exodeoxyribonuclease III [Cronobacter dublinensis 1210]
Length = 268
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 115/283 (40%), Gaps = 61/283 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++N+NGLR R Q +L ++ D+I QETK+ + V GY F+
Sbjct: 1 MKFISFNINGLRARPHQLAAL---VEQHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA + A PV+ GF G E + +I
Sbjct: 57 ------HGQKGHYGVALLTK----------ATPVSVRRGFPGDGEEAQRRI--------- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
I +E I G + N Y P+ +S D V+ K +F+ LQ + L
Sbjct: 92 -----IMAEIPSAI---GDITVINGYFPQGESRDHEVKFPAKAKFYQDLQDYLDTALKND 143
Query: 180 RRIFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSF 224
+ ++GD+NI+P +D +C P E R W +L
Sbjct: 144 NPVLIMGDMNISPTDLDIGIGEESRKRWLRTGKCSFLP-----EEREWMGRLL---NWGL 195
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
D FR +PE R+ Y+ + + N G RID +L + P +
Sbjct: 196 TDTFRHANPETRDRYSWFDYRSKGFDENRGLRIDLLLASAPLM 238
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 122/279 (43%), Gaps = 61/279 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR + R + DAD C QETK++ +L D +GYES+++
Sbjct: 10 MKFISWNVNGLRACDGK--GFRDAFRNLDADFFCLQETKMQAGQLDIDF---EGYESYWN 64
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + P + V + EE
Sbjct: 65 YAE-----KKGYSGTAIFTK-HHPLN---VTYGLGHEEH--------------------- 94
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + + +F L VY P + E R+ +++ + + E+LL +
Sbjct: 95 ------DHEGRVITLEMDNFFLITVYTPNSQDE-LRRLDYRMTWEDAFR---EYLLELNK 144
Query: 181 R--IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ + V GDLN+A ID R +AG F E + L+ +G F D FR
Sbjct: 145 KKPVIVCGDLNVAHQEIDLKNPKTNRRNAG--FTDEEREK--MTQLLNAG--FTDTFRFF 198
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+P+ AY+ W A + N G RID+ L + CL+ K
Sbjct: 199 NPDLTGAYSWWSYRFRAREKNAGWRIDYFLVSN-CLNDK 236
>gi|418718987|ref|ZP_13278187.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|421092901|ref|ZP_15553629.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|410364277|gb|EKP15302.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. 200801926]
gi|410744140|gb|EKQ92881.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. UI 09149]
gi|456890159|gb|EMG01009.1| exodeoxyribonuclease III [Leptospira borgpetersenii str. 200701203]
Length = 254
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 110/266 (41%), Gaps = 47/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+++ N NG+R + + L + D ICFQETK ++++ L GY F
Sbjct: 1 MKLISLNCNGIRSSLGK--GLSDYIRDRKPDFICFQETKATQEQISPSLWEEGGYTPVFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + K P KI GL D
Sbjct: 59 SAE-----KKGYSGVAVLYK-KPP------------------------QKITIGLGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ F L+N Y P + + VR K++F + QK +
Sbjct: 86 ---PFFDKEGRSIYLEYPDFALWNSYFPSGTTGE-VRQAAKMKFLDLFQKEAAKRRKKQP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD+NIA D D + + F R W + +E G + D FR +PE++
Sbjct: 142 NILLCGDINIAHTPQDIHDPKGNAKSSGFLPEEREWL-TQFLEKG--WVDTFRYLYPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
E Y+ W GA N G RID+
Sbjct: 199 E-YSWWTFRAGARAKNKGWRIDYFFV 223
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 120/281 (42%), Gaps = 65/281 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R V + LD F DADI C QETKL+ +++ DL GY
Sbjct: 6 MKFISWNVNGIRACVG-----KGFLDFFKEVDADIFCLQETKLQEGQIELDL---PGYFQ 57
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ R GYSG A F + K P K+M G+
Sbjct: 58 YWNYAE-----RKGYSGTAIFTK-KEPL------------------------KVMYGI-- 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEF 174
+ + D EGR + + F VY P + SE R +++ F L K
Sbjct: 86 ----NIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKRLEYRTRWEDDFIDYLTK---- 137
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFR 229
L + + V GD+N+A ID + F K E + S L++SG F D +R
Sbjct: 138 -LDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKF--SKLLDSG--FIDTYR 192
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+P++ Y+ W A + N G RID+ CA L +
Sbjct: 193 YFNPDKEGVYSWWSYRFNARKNNAGWRIDY-FCASKKLEDR 232
>gi|359482196|ref|XP_002274714.2| PREDICTED: apurinic endonuclease-redox protein-like [Vitis
vinifera]
Length = 479
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 123/277 (44%), Gaps = 42/277 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKS-DLVMADGYE-S 57
+K++++NVNGLR + G S KL D D++ QETKL+ +++++ + +GYE S
Sbjct: 219 VKLMSWNVNGLRGLLKSKGFSALKLAQREDFDVLSLQETKLQEKDVEAIKQSVIEGYENS 278
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++C+ + + GYSG A R+K P++ G G+ D
Sbjct: 279 FWTCSVS----KLGYSGTAIISRIK----------PLSVRYGL-------------GISD 311
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
DSEGR + + F L + Y P + + R+ +++ + + L
Sbjct: 312 H--------DSEGRLLTAEFESFYLLSGYVPNS-GDGLKRLSYRVTQWDSALGSYMKELE 362
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES--GGSFFDVFRSKHPER 235
+ + + + GDLN A ID D + F R L ++ F D FR +HP
Sbjct: 363 KSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTDEERQSLEKNFLSKGFVDSFRKQHPGV 422
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
YT W G + N G R+D+ L + + HD
Sbjct: 423 V-GYTYWGYRNGCRKSNKGWRLDYFLVSESIADKVHD 458
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 125/280 (44%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ DL + Y
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQI--DLNPEEYY----- 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T + + GYSG A F + K P S T GL G+E+
Sbjct: 53 -TYWNYAVKKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFEDFHMITLYTPNS-KRGLERLDYRMKWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN++ ID + P F+ E R F +L E F D +R +
Sbjct: 136 KKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEE-REKFTKILEE---GFVDTYRFLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
PE+ AY+ W GA N G R+D+ + + H+ D
Sbjct: 192 PEQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|320536290|ref|ZP_08036333.1| exodeoxyribonuclease III [Treponema phagedenis F0421]
gi|320146850|gb|EFW38423.1| exodeoxyribonuclease III [Treponema phagedenis F0421]
Length = 258
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 119/265 (44%), Gaps = 48/265 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+ I+++NVNG+R V + G L + DI+C QE K R++++ +L +A +E
Sbjct: 2 LNIISWNVNGIRA-VEKKGFADWLYNE-SPDILCLQEIKARKEQVSGEL-LAPVWEGGTY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T R GYSG A F + E +IM+ LE+F
Sbjct: 59 KTFWQPAKRPGYSGTALFTKK-----------------------EPDNIRIMD-LEEF-- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT-VRIQFKLQFFHVLQKRWEFLLCQG 179
DSEGR + D G + + Y P +S+D R+ +KL+F +++ + L +G
Sbjct: 93 ------DSEGRVIAADFGKLTVISAYFP--NSQDAGARLAYKLEFCAAMREFCDNLQKEG 144
Query: 180 RRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234
+ + + GD NIA ID + P + E R W M V +G + D FR E
Sbjct: 145 QDVILCGDYNIAHKPIDLANPKTNEKNPGYLPEE-REW---MDVFTGAGYVDTFRHFCAE 200
Query: 235 RREAYTCWPSNTGAEQFNYGTRIDH 259
E YT W A + N G RID+
Sbjct: 201 -PEHYTWWTYRFKARERNVGWRIDY 224
>gi|444912439|ref|ZP_21232603.1| Exodeoxyribonuclease III [Cystobacter fuscus DSM 2262]
gi|444717021|gb|ELW57858.1| Exodeoxyribonuclease III [Cystobacter fuscus DSM 2262]
Length = 262
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 114/274 (41%), Gaps = 57/274 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+IV++NVNGL R + L + AD++ QE + R ++L ++ +G+
Sbjct: 1 MRIVSWNVNGL--RAAHKKGFLDWLAAEKADVVGVQEVRAREEQLPEEVRQPEGWR---- 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGV F R K+P V G+E+
Sbjct: 55 MAHIVSAKRPGYSGVGLFSR-KTPDDVVSVL----------------------GVEE--- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE--DTVRIQFKLQFFHVLQKRWEFLLCQ 178
+D+EGR + G + N Y P + + D R+ FKL F+ L + E L
Sbjct: 89 -----MDTEGRLQVARFGRLTVVNCYFPNGNGKERDNSRVPFKLAFYRRLFELLEKGLRD 143
Query: 179 GRRIFVVGDLNIAPAAID-------RCDAGPDF-AKNEFRIWFRSMLVESGGSFFDVFRS 230
G RI VVGD N A ID R +G + EF W R+ + D FR
Sbjct: 144 GERIVVVGDFNTAHQEIDLARPKDNRETSGFLLEERQEFCRWLRA-------GWVDTFR- 195
Query: 231 KHPERREA-YTCWPSNTGAEQFNYGTRIDHILCA 263
H E+ Y+ W G + N G R+D++L +
Sbjct: 196 -HFEKGAGHYSWWSQRFGVRERNVGWRLDYVLAS 228
>gi|313682316|ref|YP_004060054.1| exodeoxyribonuclease III [Sulfuricurvum kujiense DSM 16994]
gi|313155176|gb|ADR33854.1| exodeoxyribonuclease III [Sulfuricurvum kujiense DSM 16994]
Length = 258
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 47/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNG+R V++ G L+ I+C QE K +++ +L + FS
Sbjct: 5 IEIISWNVNGIRA-VAEKGGF-DWLEERQPHIVCLQEIKALSEQIPQNL-----FSHHFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG T +++ +S T + +
Sbjct: 58 NITVNSAEKKGYSGTLTASKLEPIYSDTRADIDIM------------------------- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+EGR V +G LFNVY P +D R+ +KL+F+ E L +G+
Sbjct: 93 -------NEGRIVEHHYGDIALFNVYFPNG-QKDEERLAYKLEFYERFLDYCEALRREGK 144
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+I + GD+N A ID + + + F R W +L + D FR H ++
Sbjct: 145 KIIICGDVNTAHRPIDLKNPKSNEKTSGFLPIERDWIDKLL---SHGYIDTFRHVHGDKE 201
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
Y+ W A N G RID+ +
Sbjct: 202 NEYSWWSYRFSARSKNVGWRIDYFFIS 228
>gi|115440517|ref|NP_001044538.1| Os01g0801100 [Oryza sativa Japonica Group]
gi|113534069|dbj|BAF06452.1| Os01g0801100 [Oryza sativa Japonica Group]
Length = 310
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 116/275 (42%), Gaps = 42/275 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
MKI+++N+NGL V+ G S R L + D++C QET L ++++ + Y+S++
Sbjct: 54 MKILSWNINGLHDVVTTKGFSARDLAQRENFDVLCLQETHLEEKDVEKFKNLIADYDSYW 113
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
SC+ + R GYSG A RVK P++ + G G+ E
Sbjct: 114 SCSVS----RLGYSGTAVISRVK----------PISVQYGI-GIREH------------- 145
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D EGR + + F L N Y P + R+ +++ + + +L +
Sbjct: 146 -------DHEGRVITLEFDGFYLVNAYVPNS-GRFLRRLNYRVNNWDPCFSNYVKILEKS 197
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--SGGSFFDVFRSKHPERRE 237
+ + V GDLN A +ID + F I R S D FR +HP
Sbjct: 198 KPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHPN-AV 256
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
YT W N N G R+D+ L + + HD
Sbjct: 257 GYTFWGENQRIT--NKGWRLDYFLASESITDKVHD 289
>gi|418738616|ref|ZP_13295009.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410745314|gb|EKQ98224.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 254
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 109/266 (40%), Gaps = 47/266 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+++ N NG+R + + L + D ICFQETK ++++ L GY F
Sbjct: 1 MKLISLNCNGIRSSLEK--GLSDYIRDRKPDFICFQETKATQEQIPPSLWEEGGYTPVFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA L + KI GL D
Sbjct: 59 SAE-----KKGYSGVAV-------------------------LYKKPPQKITIGLGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ F L+N Y P + + VR K++F + QK +
Sbjct: 86 ---PFFDKEGRSIYLEYPDFALWNSYFPSGTTGE-VRQAAKMKFLDLFQKEAAKRRKKQP 141
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I + GD+NIA D D + + F R W + +E G + D FR +PE++
Sbjct: 142 NILLCGDINIAHTPQDIHDPKGNAKSSGFLPEEREWL-TQFLEKG--WVDTFRYLYPEKQ 198
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILC 262
E Y+ W GA N G RID+
Sbjct: 199 E-YSWWTFRAGARAKNKGWRIDYFFV 223
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 123/271 (45%), Gaps = 57/271 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
E+ + D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 82 -EIEEHDQEGRLITLEFEDFYMITLYTPNS-KRGLERLDYRMKWEDDFRSYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A ID + P F+ E R F +L E F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
++ AY+ W GA N G R+D+ + +
Sbjct: 192 SDQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|71083659|ref|YP_266379.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|71062772|gb|AAZ21775.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
Length = 258
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 113/277 (40%), Gaps = 56/277 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M I ++NVN +R R+ ++++ L F D++ QE K + + D A YES
Sbjct: 1 MIITSWNVNSVRARIE---NIKEYLQKFSPDVVMMQEIKTQDETFPYDDFSALDYESHVF 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE-DFS 119
G+ Y+GVA + K +E ++ D
Sbjct: 58 -------GQKSYNGVAIISKHK-----------------------------LENVKIDLI 81
Query: 120 KDELLKIDSEGRCVITDHGH----FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFL 175
KD+L + R + + H L N+Y P + DT + +K + L K+ + L
Sbjct: 82 KDKL----KQSRIISAELKHKKKNIQLINIYTPNGNPVDTDKYTYKKNWLDKLIKQLKTL 137
Query: 176 LCQGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231
+ I + GD NI P+A D + + E R FR M+ F D +R
Sbjct: 138 SKKNENIILAGDFNILPSAEDAYNIKGFEDDALYRLEIRKKFREMI---NLGFHDAYRHI 194
Query: 232 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 268
H E +E YT W GA Q N G RIDH L + L+
Sbjct: 195 HGE-KEGYTYWDYMRGAWQKNNGLRIDHFLVSNSLLN 230
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 120/276 (43%), Gaps = 70/276 (25%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNG+R + + + + DADI C QE+K+ +L+ DL GY +++
Sbjct: 3 KMISWNVNGIRACIEK--GFLDVFKNMDADIFCIQESKVSEGQLELDL---PGYYDYWNY 57
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ + GYSGVA F + K PV G G+E+
Sbjct: 58 AQ-----KKGYSGVAMFTKDK----------PVKVTYGM-------------GIEEH--- 86
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE--FL---- 175
D+EGR + + ++ + Y P + + T R+++++ WE FL
Sbjct: 87 -----DNEGRIITAEFENYYMLTCYTPNSQRQLT-RLEYRMD--------WEDAFLDYIK 132
Query: 176 -LCQGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227
L Q + + GDLN+A A ID R +AG F E + M V F D
Sbjct: 133 NLSQKKPLIYCGDLNVAFADIDLKNPKTNRKNAG--FTDEE----RQKMAVVQASGFTDS 186
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
FR +P+ Y+ W GA N G RID+ + +
Sbjct: 187 FRYLYPDLEGVYSWWSYMGGARSKNIGWRIDYFMVS 222
>gi|218709053|ref|YP_002416674.1| exonuclease III [Vibrio splendidus LGP32]
gi|218322072|emb|CAV18146.1| Exodeoxyribonuclease III [Vibrio splendidus LGP32]
Length = 268
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 119/276 (43%), Gaps = 54/276 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR R+ Q L+ ++D D+I QE K+ + V A GY+ +F
Sbjct: 1 MKVISFNINGLRARLHQ---LQAIIDKHQPDVIGLQEIKVHDEAFPLADVEAMGYKVYFH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGF-TGLLETSGSKIMEGLEDFS 119
G+ + GVA C+ + P++ ++GF T + IM ED
Sbjct: 58 -------GQKAHYGVAMLCKQE----------PISVQKGFPTDNEDHQKRMIMATFED-- 98
Query: 120 KDELLKIDSEGRCVITDHGHFI-LFNVYGPRADS-EDTVRIQFKLQFFHVLQKRWEFLLC 177
+HG + + N Y P+ D+ + + +K QF+ L
Sbjct: 99 ----------------EHGEKVTVLNGYFPQGDNIKHETKYPYKRQFYKDLMTYLNDYHN 142
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAK----------NEFRIWFRSMLVESGGSFFDV 227
+ ++ V+GD+NI+P ID P+ + E R W ++++ F D
Sbjct: 143 KDEQVIVMGDINISPTDIDIGIGEPNAKRWLKTGKCSFQPEEREWLKTLM---DWGFVDS 199
Query: 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
FR HPE + Y+ + + N G RID +L
Sbjct: 200 FRLLHPEVNDQYSWFDYRSKGFVDNRGLRIDVVLAT 235
>gi|429108463|ref|ZP_19170332.1| Exodeoxyribonuclease III [Cronobacter malonaticus 681]
gi|429109963|ref|ZP_19171733.1| Exodeoxyribonuclease III [Cronobacter malonaticus 507]
gi|426295186|emb|CCJ96445.1| Exodeoxyribonuclease III [Cronobacter malonaticus 681]
gi|426311120|emb|CCJ97846.1| Exodeoxyribonuclease III [Cronobacter malonaticus 507]
Length = 268
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 61/288 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++N+NGLR R Q +L ++ D+I QETK+ + V GY F+
Sbjct: 1 MKFISFNINGLRARPHQLAAL---VEQHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA + A PV+ GF G E + +I+
Sbjct: 57 ------HGQKGHYGVALLTK----------ATPVSVRRGFPGDGEEAQRRIIMA------ 94
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
+ + G + N Y P+ +S D V+ K +F+ LQ E L
Sbjct: 95 -----------EIPSSIGDITVINGYFPQGESRDHEVKFPAKAKFYQDLQDYLETALSND 143
Query: 180 RRIFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSF 224
+ + ++GD+NI+P +D +C P E R W +L
Sbjct: 144 KPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLP-----EEREWMGRLL---NWGL 195
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
D FR +PE + Y+ + + N G RID +L + P + + D
Sbjct: 196 KDTFRHANPETSDRYSWFDYRSKGFDDNRGLRIDLLLASDPLMARLAD 243
>gi|119899953|ref|YP_935166.1| exodeoxyribonuclease III [Azoarcus sp. BH72]
gi|119672366|emb|CAL96280.1| Exodeoxyribonuclease III [Azoarcus sp. BH72]
Length = 260
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 127/297 (42%), Gaps = 47/297 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I++ N+NG+R ++ L + +AD++C QE K + +L + GY+ +F
Sbjct: 2 LRIISANLNGIRSATTK--GFLDWLPAQNADVVCVQELKAQAGDLTDAMRAPAGYQGWFH 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV + R K+P +++EGL
Sbjct: 60 YAE-----KKGYSGVGIYSR-KAP------------------------DRVVEGL----- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
+ ID+EGR + D G + ++Y P S + R Q K F R L G+
Sbjct: 85 -GIADIDAEGRYLQADFGALSVISLYLPSGSSSEE-RQQAKFSFMERFMPRLAELRRCGQ 142
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NIA ID + + + F R W ++ G + DV+R+ +PE
Sbjct: 143 EVVICGDWNIAHREIDLKNWKSNQKNSGFLPEERAWIGTLFDTHG--WVDVYRALYPEAT 200
Query: 237 -EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 292
++YT W + A N G RID+ + A P + + S + +++DY
Sbjct: 201 GDSYTWWSNRGQAWAKNVGWRIDYQI-ATPGIAARARAGSVYKAQRFSDHAPLVVDY 256
>gi|88608769|ref|YP_506301.1| exodeoxyribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600938|gb|ABD46406.1| exodeoxyribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 265
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 113/266 (42%), Gaps = 43/266 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ T+NVN +RQR ++ LL S + D++ QE K + + + Y
Sbjct: 7 LKVATWNVNSIRQRAE---AVSALLVSENLDVLLLQELKCQESDFPLHVFNDLSYNVILK 63
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GY+GVA R S E+ + A + +EG+ F
Sbjct: 64 CQK-------GYNGVAIASRWPITKISDEIYMDGEA-------------RYIEGVISFFD 103
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-FLLCQG 179
+C+ L ++Y P A + + R ++K+QF L +R +LL
Sbjct: 104 ----------KCI-------RLISIYIPNAQAAGSPRFEYKMQFHDALARRIHGYLLNNN 146
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREA 238
+ + GD+N AP ID D F I RS L E FD FR K+P ++E
Sbjct: 147 DIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERSKLRELLNLGLFDTFRMKYPTKQE- 205
Query: 239 YTCWPSNTGAEQFNYGTRIDHILCAG 264
++ W G Q N G RIDHIL +
Sbjct: 206 FSWWDYRGGGLQRNEGMRIDHILASA 231
>gi|421124299|ref|ZP_15584559.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410438218|gb|EKP87314.1| exodeoxyribonuclease III [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
Length = 267
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 50/281 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + + D ICFQETK + ++ L GY F
Sbjct: 14 MKFISLNCNGIRSSLEK--GLADYIRNTKPDFICFQETKANQDQVPPSLWEEGGYTPVFH 71
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA L + KI+ G+ D
Sbjct: 72 SAE-----KKGYSGVAV-------------------------LYKKPPEKIIIGIGD--- 98
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D +R K++F + QK +
Sbjct: 99 ---PFFDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQP 154
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I V GD+NIA D D + + F R W L + D FR +P+++
Sbjct: 155 NIIVCGDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWVDTFRYLYPDKQ 211
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 277
E Y+ W GA N G RID+ K +++SH+
Sbjct: 212 E-YSWWTFRAGARAKNKGWRIDYFFVTE---ELKKNVKSHS 248
>gi|429120205|ref|ZP_19180889.1| Exodeoxyribonuclease III [Cronobacter sakazakii 680]
gi|426325271|emb|CCK11626.1| Exodeoxyribonuclease III [Cronobacter sakazakii 680]
Length = 268
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 114/283 (40%), Gaps = 61/283 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++N+NGLR R Q +L ++ D+I QETK+ + V GY F+
Sbjct: 1 MKFISFNINGLRARPHQLAAL---VEQHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA + A PV+ GF G E + +I+
Sbjct: 57 ------HGQKGHYGVALLTK----------ATPVSVRRGFPGDGEEAQRRIIMA------ 94
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQKRWEFLLCQG 179
+ + G + N Y P+ +S D V+ K +F+ LQ E L
Sbjct: 95 -----------EIPSSIGDITVINGYFPQGESRDHEVKFPAKAKFYQDLQDYLETALSNN 143
Query: 180 RRIFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSF 224
+ + ++GD+NI+P +D +C P E R W +L
Sbjct: 144 KPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLP-----EEREWMGRLL---NWGL 195
Query: 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267
D FR +PE + Y+ + + N G RID +L + P +
Sbjct: 196 KDTFRHANPETSDRYSWFDYRSKGFDDNRGLRIDLLLASDPLM 238
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 121/284 (42%), Gaps = 58/284 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + ++ ++ DAD C QETKL+ +++ DL GY +++
Sbjct: 1 MKFISWNVNGLRAIVKK--NFSEVFEALDADFFCLQETKLQEGQIELDL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P S L G+E+
Sbjct: 56 YAE-----KKGYSGTAIFA--KEPALSVRYGL---------------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQKRWEFLLC 177
D+EGR + ++ F L Y P + +E R+ ++ F L + L
Sbjct: 86 ------DTEGRVITLEYPEFFLITCYTPNSQNELRRLDYRMTWEDAFLAYLTE-----LK 134
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
Q + + + GDLN+A ID + + F E R F ++L F D FR +
Sbjct: 135 QQKPVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEE-REKFSTLL---AAGFTDTFRYFY 190
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
P+ Y+ W A + N G RID+ + + + D + H
Sbjct: 191 PDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNERLLDAKIH 234
>gi|418700055|ref|ZP_13261000.1| exodeoxyribonuclease III [Leptospira interrogans serovar Bataviae
str. L1111]
gi|421116292|ref|ZP_15576680.1| exodeoxyribonuclease III [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410012296|gb|EKO70399.1| exodeoxyribonuclease III [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410760927|gb|EKR27120.1| exodeoxyribonuclease III [Leptospira interrogans serovar Bataviae
str. L1111]
Length = 267
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 108/267 (40%), Gaps = 47/267 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + + D ICFQETK + ++ L GY F
Sbjct: 14 MKFISLNCNGIRSSLEK--GLADYIRNTKPDFICFQETKANQDQVPPSLWEEGGYTPVFH 71
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA L + KI+ G+ D
Sbjct: 72 SAE-----KKGYSGVAV-------------------------LYKKPPEKIIIGIGD--- 98
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR + ++ +F L+N+Y P + D +R K++F + QK +
Sbjct: 99 ---PFFDKEGRSIYLEYPNFALWNLYFPSGTTGD-IRQAAKMKFLDLFQKESSKRRKKQP 154
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
I V GD+NIA D D + + F R W L + D FR +P+++
Sbjct: 155 NIIVCGDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFL---NKGWIDTFRYLYPDKQ 211
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
E Y+ W GA N G RID+
Sbjct: 212 E-YSWWTFRAGARAKNKGWRIDYFFVT 237
>gi|303256316|ref|ZP_07342332.1| exodeoxyribonuclease III [Burkholderiales bacterium 1_1_47]
gi|302861045|gb|EFL84120.1| exodeoxyribonuclease III [Burkholderiales bacterium 1_1_47]
Length = 262
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 109/263 (41%), Gaps = 47/263 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+T N NG+R V++ L DADI+C QE K + E+ ++ + + +
Sbjct: 6 LKIITINTNGIRSAVNK--GFHLWLAKQDADIVCIQELKAQPDEVPDEINLDGAFYRYVH 63
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSG A R K EV + EE
Sbjct: 64 CAE-----KKGYSGCAILTRKK----PDEVIIGFGNEE---------------------- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D EGR V + I+ ++Y P S + R Q K +F V++ R + LL GR
Sbjct: 93 -----FDREGRYVEARFNNLIVVSIYFPSGSSSEE-RQQAKFRFLDVIKGRLDELLRDGR 146
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 236
+ + GD NIA ID + + + F R W L E + DVFR P R
Sbjct: 147 DVVLCGDFNIAHKEIDIKNWKGNLKNSGFLPEERQWITDRLRE---GWQDVFRRLDP-RP 202
Query: 237 EAYTCWPSNTGAEQFNYGTRIDH 259
+ +T W + A N G RID+
Sbjct: 203 DRFTWWSNRGRARINNVGWRIDY 225
>gi|298375698|ref|ZP_06985655.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_19]
gi|298268198|gb|EFI09854.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_19]
Length = 284
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 113/268 (42%), Gaps = 49/268 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+TYN NGLR V + L + L D++C QETKL+ + S+ GY+S+
Sbjct: 32 LKIITYNTNGLRAAVGK--GLPEWLAQEQPDVLCIQETKLQPDQFPSETFETLGYKSYLF 89
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E
Sbjct: 90 SAQ-----KKGYSGVAILTKQE----------PDHIEYGM-------------GIE---- 117
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
K D+EGR + D G + +VY P S D R FK+ + QK L
Sbjct: 118 ----KYDNEGRFLRADFGDVSIVSVYHPSGTSGDE-RQDFKMIWLEDFQKYVVELQKSRP 172
Query: 181 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 235
+ + GD NI ID D + AKN E R W L F D FR +P++
Sbjct: 173 NLILCGDYNICHEPIDIHDPIRN-AKNSGFLPEEREWMTRFL---SAGFTDTFRFLNPDK 228
Query: 236 REAYTCWPSNTGAEQFNYGTRIDHILCA 263
+E YT W + N G RID+ + +
Sbjct: 229 QE-YTWWSYRFNSRFKNKGWRIDYCMVS 255
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 41/256 (16%)
Query: 23 KLLDSFDADIICFQETKLRRQELKS-DLVMADGYESFFSCTRTSDKGRTGYSGVATFCRV 81
+L++S DADI+C QETKL+ ++ + + ++ G + + S + GYSGVA R
Sbjct: 3 QLINSEDADILCLQETKLKDSDVAACEKLLRPGLQDWHFYFNNS-IAKKGYSGVAVLSRA 61
Query: 82 KSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFI 141
K P S T GL G ED D EGR + ++ F
Sbjct: 62 K-PLSVT------------NGL----------GKEDH--------DQEGRVITAEYPSFY 90
Query: 142 LFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG 201
+ NVY P + E R+++++ + V + L + + + GDLN A ID D
Sbjct: 91 VVNVYVPNS-GEGLKRLEYRVGSWDVAFADYLAGLGAKKPVILTGDLNCAHQEIDIHDPK 149
Query: 202 PDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 257
+ F R F + L++ G F D FR K+P+ YT W TGA N G R+
Sbjct: 150 RNLKSAGFTEEERKSFSAQLLQRG--FKDTFREKYPD-VVGYTYWNYRTGARVRNRGWRL 206
Query: 258 DHILCAGPCLHQKHDL 273
D+ L + + HD+
Sbjct: 207 DYFLVSEALAERVHDI 222
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 123/291 (42%), Gaps = 71/291 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V+ + DAD C QETKL+ ++ DL + D Y +++
Sbjct: 1 MKFISWNVNGLRAAVTH--GFMDTFNQLDADFFCVQETKLQLGQI--DLKLPDNYYQYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P+ A G G+++F
Sbjct: 57 YA-----DKKGYSGTAIFTKHK----------PLNASLGI-------------GIDEF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQKRWE 173
D EGR + ++ F L Y P + + R+ F+ L + + L + +
Sbjct: 87 ------DHEGRVITLEYPSFYLITCYTPNS-GQQLKRLDFRQNWNKAFLDYINQLSAKKD 139
Query: 174 FLLCQGRRIFVVGDLNIAPAAIDRCD-------AG-PDFAKNEFRIWFRSMLVESGGSFF 225
+ C GDLN+A ID + AG D +N+F + L+ES +F
Sbjct: 140 VIFC--------GDLNVAHETIDLKNPSSNHHAAGFTDEERNDF-----THLLES--NFV 184
Query: 226 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
D +R +PE E Y+ W + N G RID+ + + Q D + H
Sbjct: 185 DTYRHFYPEVTEQYSWWSYRFHSRDRNAGWRIDYFVTSTGLTDQLVDAKIH 235
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 50/267 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K +++NVNGLR + + + DAD C QETKL+ +++ DL GY +++
Sbjct: 4 LKYISWNVNGLRACMKK--GFMQSFKELDADCFCLQETKLQPDQIELDL---PGYYQYWN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F ++K P++ G G+E+
Sbjct: 59 SAV-----KKGYSGTALFTKIK----------PLSVTYGI-------------GMEEH-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQKRWEFLLC 177
D EGR + D L Y P R + T R++++ F K++ L
Sbjct: 89 ------DQEGRVITADFNDHCLVTCYTPNSQRGLARLTYRMKWEDDF-----KKYLLDLS 137
Query: 178 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERR 236
+ + + + GDLN+A ID + + F R+ + E F D FR H +++
Sbjct: 138 KKKPVILCGDLNVAHEEIDLANPASNHMNAGFTDDERNKMTELLSDGFTDSFRYLHQDKK 197
Query: 237 EAYTCWPSNTGAEQFNYGTRIDHILCA 263
+AY+ W + + N G RID+ L +
Sbjct: 198 DAYSWWSYFAKSRERNIGWRIDYFLVS 224
>gi|55296320|dbj|BAD68138.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|55297697|dbj|BAD68287.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
Length = 307
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 116/275 (42%), Gaps = 42/275 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
MKI+++N+NGL V+ G S R L + D++C QET L ++++ + Y+S++
Sbjct: 51 MKILSWNINGLHDVVTTKGFSARDLAQRENFDVLCLQETHLEEKDVEKFKNLIADYDSYW 110
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
SC+ + R GYSG A RVK P++ + G G+ E
Sbjct: 111 SCSVS----RLGYSGTAVISRVK----------PISVQYGI-GIREH------------- 142
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG 179
D EGR + + F L N Y P + R+ +++ + + +L +
Sbjct: 143 -------DHEGRVITLEFDGFYLVNAYVPNS-GRFLRRLNYRVNNWDPCFSNYVKILEKS 194
Query: 180 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--SGGSFFDVFRSKHPERRE 237
+ + V GDLN A +ID + F I R S D FR +HP
Sbjct: 195 KPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHPN-AV 253
Query: 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 272
YT W N N G R+D+ L + + HD
Sbjct: 254 GYTFWGENQRIT--NKGWRLDYFLASESITDKVHD 286
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 62/273 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + ++ ++ DAD C QETKL+ +++ DL GY +++
Sbjct: 1 MKFISWNVNGLRAIVKK--NFSEVFEALDADFFCLQETKLQEGQIELDL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P S L G+E+
Sbjct: 56 YAE-----KKGYSGTAIFA--KEPALSVRYGL---------------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQKRWEFLLC 177
D+EGR + ++ F L Y P + +E R+ ++ F L + L
Sbjct: 86 ------DTEGRVITLEYPEFFLITCYTPNSQNELRRLDYRMTWEDAFLAYLTE-----LK 134
Query: 178 QGRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 230
Q + + + GDLN+A ID + AG F E R F ++L F D FR
Sbjct: 135 QQKPVILCGDLNVAHKNIDIKNWKTNQKSAG--FTPEE-REKFSTLL---AAGFTDTFRY 188
Query: 231 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 263
+P+ Y+ W A + N G RID+ + +
Sbjct: 189 FYPDAEGIYSWWSYRFNARKNNAGWRIDYFVVS 221
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 120/281 (42%), Gaps = 65/281 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R V + LD F DAD+ C QETKL+ +++ DL GY
Sbjct: 1 MKFISWNVNGIRACVG-----KGFLDFFKEVDADVFCLQETKLQEGQIELDL---PGYFQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ R GYSG A F + K P K+M G+
Sbjct: 53 YWNYAE-----RKGYSGTAIFTK-KEPL------------------------KVMYGI-- 80
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQKRWEF 174
+ + D EGR + + F VY P + SE R +++ F L K
Sbjct: 81 ----NIEEHDKEGRVITLEFEDFYFVTVYTPNSQSELKRLEYRTRWEDDFIDYLTK---- 132
Query: 175 LLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFR 229
L + + V GD+N+A ID + F K E + S L++SG F D +R
Sbjct: 133 -LDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKF--SKLLDSG--FIDTYR 187
Query: 230 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
+P++ Y+ W A + N G RID+ CA L +
Sbjct: 188 YFNPDKEGVYSWWSYRFNARKNNAGWRIDY-FCASKKLEDR 227
>gi|374287729|ref|YP_005034814.1| putative exodeoxyribonuclease [Bacteriovorax marinus SJ]
gi|301166270|emb|CBW25845.1| putative exodeoxyribonuclease [Bacteriovorax marinus SJ]
Length = 256
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 116/263 (44%), Gaps = 42/263 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NV G+R + G L+ A++ CFQETK ++L LV + + ++
Sbjct: 1 MKIYSWNVAGIRA-CEKKGLYDWYLEEL-AEVYCFQETKALPEQLNDQLVNPKSHSAIYA 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV+T+ VKS GL G+E+F
Sbjct: 59 PAV-----KKGYSGVSTW--VKSGIEHKHT----------IGL----------GIEEF-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGR 180
D+EGR +IT+ +F LFN Y P D R+ +K+ + ++++ + L Q +
Sbjct: 90 ------DNEGRTIITEFDNFFLFNCYFPNG-QRDHARVPYKMSYCKAIEEKAQELHQQFK 142
Query: 181 R-IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML--VESGGSFFDVFRSKHPERRE 237
+ I + GD N A ID + + F R + E G + D+FR PE
Sbjct: 143 KDIIITGDYNTAHHPIDLANPKTNTKSTGFLPLEREWMDHFEEIG-YVDIFRHFTPEENG 201
Query: 238 AYTCWPSNTGAEQFNYGTRIDHI 260
YT W + + N G RID+
Sbjct: 202 HYTWWTYRSNCRERNIGWRIDYF 224
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 120/283 (42%), Gaps = 56/283 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNGLR V + + DAD+ C QETKL+ ++ DL GY +++
Sbjct: 6 LKLISWNVNGLRAAVKH--GFLDVFNELDADMFCVQETKLQEGQIDLDL---PGYHQYWN 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + PVA G G+ +F
Sbjct: 61 YAE-----KKGYSGTAIFTKRE----------PVAVSYGL-------------GIPEF-- 90
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + ++ F L Y P + E R+ +++ + F K+ L
Sbjct: 91 ------DQEGRVITLEYEEFFLVTCYTPNSQPE-LRRLDYRMNWDDAFRAYVKQ----LA 139
Query: 178 QGRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233
+ + GDLN+A ID R + +E R F +L +SG F D +R +P
Sbjct: 140 DTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTELL-QSG--FTDTYRYFYP 196
Query: 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 276
++ Y+ W A N G RID+ + + Q D + H
Sbjct: 197 DKEGVYSWWSYRFNARANNAGWRIDYFVTSQALDKQLADAKIH 239
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 65/300 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEKS-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVLQKRWEFLLC 177
D EGR + + F + +Y P + R+ +++++ F KR L
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNS-KRGLERLDYRMEWEDDFRAYIKR----LD 135
Query: 178 QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232
+ + + GDLN+A +D + P F+ E R F +L E+G F D +R +
Sbjct: 136 EKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE-REKFTCVL-EAG--FIDTYRYLY 191
Query: 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ--------SHNFVTCHVN 284
P++ AY+ W A N G R+D+ + + H+ D + H V H+N
Sbjct: 192 PDQEGAYSWWSYRMDARAKNIGWRLDYFVISERLKHKITDAKINSEVMGSDHCPVELHIN 251
>gi|444427648|ref|ZP_21223022.1| exonuclease III [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444239109|gb|ELU50686.1| exonuclease III [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 268
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 122/282 (43%), Gaps = 53/282 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR R+ Q L+ L+D D+I QE K+ + + V A GY+ +F
Sbjct: 1 MKVISFNINGLRARLHQ---LQALIDKHQPDVIGLQEIKVHDEAFPIEDVEAMGYKVYFH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGF-TGLLETSGSKIMEGLEDFS 119
G+ + GVA C+ + P++ ++GF T E IM E
Sbjct: 58 -------GQKAHYGVAMLCKQE----------PISVQKGFPTDNEEHQKRMIMVTFE--- 97
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADS-EDTVRIQFKLQFFHVLQKRWEFLLCQ 178
D G V +G+F P+ D+ + +K QF+ L
Sbjct: 98 -------DENGEKVTVLNGYF-------PQGDNIAHETKYPYKRQFYKDLMTYLNDHHTN 143
Query: 179 GRRIFVVGDLNIAPAAIDRCDAGPDFAK----------NEFRIWFRSMLVESGGSFFDVF 228
++ V+GD+NI+P D P+ + E R W +++L F D F
Sbjct: 144 DEQLIVMGDINISPIDSDIGIGEPNRKRWLKTGKCSFQPEEREWLKTLL---DWGFEDTF 200
Query: 229 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 270
R+ HPE + ++ + + N G RID IL A P L +K
Sbjct: 201 RNLHPEVNDRFSWFDYRSRGFDDNRGLRIDVIL-ATPSLAKK 241
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,992,451,345
Number of Sequences: 23463169
Number of extensions: 418709139
Number of successful extensions: 966609
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 4631
Number of HSP's that attempted gapping in prelim test: 950542
Number of HSP's gapped (non-prelim): 10458
length of query: 630
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 481
effective length of database: 8,863,183,186
effective search space: 4263191112466
effective search space used: 4263191112466
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)