Query 006804
Match_columns 630
No_of_seqs 373 out of 2132
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 14:44:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 2.1E-52 4.6E-57 421.7 19.4 252 1-324 1-260 (261)
2 PRK13911 exodeoxyribonuclease 100.0 2.4E-49 5.2E-54 404.8 23.8 244 1-323 1-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 6.9E-42 1.5E-46 353.5 23.9 251 1-324 1-267 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 5.9E-40 1.3E-44 336.3 23.2 249 1-323 1-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 3.6E-37 7.8E-42 314.4 24.4 248 1-323 1-254 (255)
6 PRK05421 hypothetical protein; 99.8 5.6E-20 1.2E-24 190.0 20.5 213 1-326 44-262 (263)
7 KOG1294 Apurinic/apyrimidinic 99.8 5.8E-21 1.2E-25 200.7 12.9 253 2-324 65-334 (335)
8 KOG1294 Apurinic/apyrimidinic 99.8 3.8E-18 8.3E-23 179.5 13.4 182 122-354 5-188 (335)
9 PLN03144 Carbon catabolite rep 99.7 1.9E-16 4.1E-21 178.3 19.3 182 1-194 255-470 (606)
10 PF03372 Exo_endo_phos: Endonu 99.7 1.4E-16 2.9E-21 158.0 13.2 75 4-82 1-83 (249)
11 COG3568 ElsH Metal-dependent h 99.7 4.5E-16 9.7E-21 157.8 16.9 232 1-326 10-258 (259)
12 KOG3873 Sphingomyelinase famil 99.7 6.1E-16 1.3E-20 159.7 12.3 256 1-329 9-296 (422)
13 TIGR03395 sphingomy sphingomye 99.6 7.3E-15 1.6E-19 153.4 20.1 166 1-193 1-191 (283)
14 PTZ00297 pantothenate kinase; 99.6 4.3E-14 9.4E-19 173.5 24.0 263 1-326 11-315 (1452)
15 KOG2756 Predicted Mg2+-depende 99.5 2.6E-13 5.6E-18 135.4 13.7 198 2-263 101-309 (349)
16 KOG2338 Transcriptional effect 99.5 2.4E-12 5.2E-17 139.0 18.7 146 18-194 151-307 (495)
17 PRK15251 cytolethal distending 99.4 3.4E-12 7.3E-17 130.6 18.4 150 1-194 25-199 (271)
18 PF06839 zf-GRF: GRF zinc fing 99.4 2.3E-13 4.9E-18 102.5 4.7 45 575-626 1-45 (45)
19 PF14529 Exo_endo_phos_2: Endo 99.3 4.4E-12 9.5E-17 114.0 9.7 98 140-267 1-99 (119)
20 COG3021 Uncharacterized protei 99.3 2.2E-11 4.8E-16 125.9 11.7 143 2-193 90-236 (309)
21 smart00476 DNaseIc deoxyribonu 99.1 2.4E-09 5.2E-14 111.2 17.3 75 1-82 18-104 (276)
22 COG5239 CCR4 mRNA deadenylase, 99.1 1.1E-09 2.4E-14 114.2 12.9 81 1-81 31-131 (378)
23 smart00128 IPPc Inositol polyp 98.9 9.6E-09 2.1E-13 108.9 13.3 157 2-193 6-195 (310)
24 KOG0620 Glucose-repressible al 98.9 3.4E-09 7.3E-14 113.8 8.7 68 19-88 53-121 (361)
25 KOG0566 Inositol-1,4,5-triphos 97.7 0.00038 8.3E-09 80.7 13.2 50 138-191 673-726 (1080)
26 COG2374 Predicted extracellula 97.6 0.00054 1.2E-08 78.2 12.7 129 160-327 653-790 (798)
27 KOG1956 DNA topoisomerase III 97.4 5.9E-05 1.3E-09 84.0 1.5 40 575-623 719-758 (758)
28 KOG4399 C2HC-type Zn-finger pr 96.8 0.00069 1.5E-08 68.1 2.8 51 572-629 11-61 (325)
29 PLN03191 Type I inositol-1,4,5 95.9 0.15 3.3E-06 58.1 14.3 17 311-327 577-593 (621)
30 COG5411 Phosphatidylinositol 5 84.2 1.7 3.6E-05 47.8 5.5 17 311-327 312-328 (460)
31 PF01396 zf-C4_Topoisom: Topoi 81.8 2.5 5.5E-05 30.8 3.9 36 576-625 3-38 (39)
32 PTZ00312 inositol-1,4,5-tripho 77.7 5.9 0.00013 41.6 6.5 56 138-193 80-142 (356)
33 PF06373 CART: Cocaine and amp 72.8 1.7 3.7E-05 35.5 1.0 44 560-621 26-69 (73)
34 PLN03191 Type I inositol-1,4,5 59.2 6.8 0.00015 45.1 2.7 36 2-39 111-149 (621)
35 PF04606 Ogr_Delta: Ogr/Delta- 57.9 11 0.00025 28.4 2.9 30 576-605 1-30 (47)
36 PF09507 CDC27: DNA polymerase 48.2 6.5 0.00014 43.3 0.3 15 462-476 416-430 (430)
37 PF05325 DUF730: Protein of un 41.3 38 0.00082 29.6 3.8 46 574-623 20-65 (122)
38 PF04216 FdhE: Protein involve 26.3 51 0.0011 34.6 2.8 30 575-605 173-202 (290)
39 cd01057 AAMH_A Aromatic and Al 23.6 39 0.00084 38.2 1.3 32 574-605 380-416 (465)
40 PRK09678 DNA-binding transcrip 22.8 1E+02 0.0022 25.8 3.2 31 575-605 2-32 (72)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-52 Score=421.68 Aligned_cols=252 Identities=37% Similarity=0.657 Sum_probs=220.1
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||||||.++++ +.++|.+.+||||||||||...+.++...+...||+.++.. |.+||+|||||+|
T Consensus 1 mkI~SwNVNgiRar~~~---~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~------gqKgysGVailsr 71 (261)
T COG0708 1 MKIASWNVNGLRARLKK---LLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNH------GQKGYSGVAILSK 71 (261)
T ss_pred CeeEEEehhhHHHHHHH---HHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEec------CcCCcceEEEEEc
Confidence 89999999999999997 99999999999999999999999998877778999777763 4589999999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~ 160 (630)
.+ |..+..|+.+. ...|.+||+|.+.+..|.|+|+|+|++...+.+++.+
T Consensus 72 ~~----------~~~v~~g~~~~--------------------~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~y 121 (261)
T COG0708 72 KP----------PDDVRRGFPGE--------------------EEDDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFDY 121 (261)
T ss_pred cC----------chhhhcCCCCC--------------------ccccccCcEEEEEECCEEEEEEEcCCCCCCCCcchHH
Confidence 84 44566666431 1257899999999999999999999999867788999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCC--------CCCCchHHHHHHHHHHHHcCCcceecccccC
Q 006804 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232 (630)
Q Consensus 161 k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~--------~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~h 232 (630)
|+.|++.|+.++++++..+.++|||||||++|.++|..+.. .+|.+++ |.||+.++. .| |+|+||.+|
T Consensus 122 Kl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~ee-R~~~~~ll~-~G--~~D~~R~~~ 197 (261)
T COG0708 122 KLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEE-RAWFRRLLN-AG--FVDTFRLFH 197 (261)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHH-HHHHHHHHH-cc--hhhhhHhhC
Confidence 99999999999999999999999999999999999976652 4577776 999998884 44 999999999
Q ss_pred CCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCC
Q 006804 233 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 312 (630)
Q Consensus 233 P~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~ 312 (630)
|.... ||||+++.+++..|.|.||||||+|+.+.. ++++|.|+.+.++|. .
T Consensus 198 p~~~~-YTwW~YR~~~~~~n~G~RID~~l~S~~L~~-------------~~~~a~I~~~~rg~e---------------~ 248 (261)
T COG0708 198 PEPEK-YTWWDYRANAARRNRGWRIDYILVSPALAD-------------RLKDAGIDREVRGWE---------------K 248 (261)
T ss_pred CCCCc-ccccccccchhhhcCceeEEEEEeCHHHHH-------------HHHhcCccHHHhcCC---------------C
Confidence 99876 999999999888889999999999998754 789999999866543 5
Q ss_pred CCCccceEEEEe
Q 006804 313 GSDHAPVYMCLG 324 (630)
Q Consensus 313 ~SDH~PV~~~L~ 324 (630)
+||||||+++|.
T Consensus 249 pSDHaPV~~e~~ 260 (261)
T COG0708 249 PSDHAPVWVELD 260 (261)
T ss_pred CCCcCcEEEEec
Confidence 699999999986
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=2.4e-49 Score=404.83 Aligned_cols=244 Identities=34% Similarity=0.610 Sum_probs=207.0
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||||||++.++ .+.++|.+++||||||||||++.+.+. ....||+.|+.+. +++||+|||||+|
T Consensus 1 mki~swNVNgir~~~~~--~~~~~l~~~~~DIiclQEtK~~~~~~~---~~~~gY~~~~~~~-----~~kgy~GVAi~~k 70 (250)
T PRK13911 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNT---FEFKGYFDFWNCA-----IKKGYSGVVTFTK 70 (250)
T ss_pred CEEEEEEeCChhHhhhh--hHHHHHHhcCCCEEEEEeecccccccc---cccCCceEEEEec-----ccCccceEEEEEc
Confidence 89999999999998864 499999999999999999999887763 3468999887543 4679999999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~ 160 (630)
.+ |+.+..|+.. ...|.|||+|.++++.|+|+|||+|+++. +.+|+.+
T Consensus 71 ~~----------~~~v~~~~~~---------------------~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~-~~~r~~~ 118 (250)
T PRK13911 71 KE----------PLSVSYGINI---------------------EEHDKEGRVITCEFESFYLVNVYTPNSQQ-ALSRLSY 118 (250)
T ss_pred CC----------chheEEcCCC---------------------CcccccCCEEEEEECCEEEEEEEecCCCC-CCcchHH
Confidence 83 5555555410 13578999999999999999999999885 4579999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCC-----CCCCCchHHHHHHHHHHHHcCCcceecccccCCCC
Q 006804 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (630)
Q Consensus 161 k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~-----~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~ 235 (630)
|++|+..|.++++.+ ..+.++|||||||++|.++|++++ ..+|.+++ |.||+.++. .| |+|+||.+||..
T Consensus 119 K~~~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~e-r~~f~~~l~-~g--l~D~~R~~~p~~ 193 (250)
T PRK13911 119 RMSWEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEE-RGKFSELLN-AG--FIDTFRYFYPNK 193 (250)
T ss_pred HHHHHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHH-HHHHHHHHh-cC--CeehhhhhCCCC
Confidence 999999999999886 567899999999999999999854 35677766 999999886 34 999999999997
Q ss_pred CCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCC
Q 006804 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315 (630)
Q Consensus 236 ~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SD 315 (630)
.+.||||+++.+++..|+|.||||||+++.+.. .+.++.|... ..+||
T Consensus 194 ~~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~-------------~~~~~~i~~~-------------------~~~SD 241 (250)
T PRK13911 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKT-------------RLKDALIYKD-------------------ILGSD 241 (250)
T ss_pred CCCCccCCCcCCccccCCcceEEEEEEChHHhh-------------hEEEEEECCC-------------------CCCCC
Confidence 778999999999999999999999999998743 6788888653 46899
Q ss_pred ccceEEEE
Q 006804 316 HAPVYMCL 323 (630)
Q Consensus 316 H~PV~~~L 323 (630)
||||+++|
T Consensus 242 H~Pv~~~~ 249 (250)
T PRK13911 242 HCPVGLEL 249 (250)
T ss_pred cccEEEEe
Confidence 99999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=6.9e-42 Score=353.47 Aligned_cols=251 Identities=29% Similarity=0.496 Sum_probs=195.9
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||||++..+++ +.++|++++|||||||||+...+.+....+...||..+|.. ..+|+|||||+|
T Consensus 1 mri~T~Nv~g~~~~~~~---i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~GvailSr 70 (268)
T PRK11756 1 MKFVSFNINGLRARPHQ---LEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHG-------QKGHYGVALLSK 70 (268)
T ss_pred CEEEEEEcCCHHHHHHH---HHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEeC-------CCCCCEEEEEEC
Confidence 89999999999876654 99999999999999999998766654445567899877642 357789999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEec----ceEEEEEEecCCCCCC-ch
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSE-DT 155 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~----~~~~LinVY~P~~~~~-~~ 155 (630)
.+ ++....++.+ ...+.++|++.+.+ +.|.|+|+|+|+.... ..
T Consensus 71 ~p----------~~~~~~~~~~---------------------~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~ 119 (268)
T PRK11756 71 QT----------PIAVRKGFPT---------------------DDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHP 119 (268)
T ss_pred CC----------hHHeEECCCC---------------------ccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcc
Confidence 84 2223332210 01245789987764 3599999999997642 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCC-----------CCCCCchHHHHHHHHHHHHcCCcc
Q 006804 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----------GPDFAKNEFRIWFRSMLVESGGSF 224 (630)
Q Consensus 156 ~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~-----------~~~~~~~~~r~~l~~lL~~~g~~l 224 (630)
.+..+|++|+..|..++.++...+.|||||||||+++..+|.+.+ ..+|.+.+ |.|++.++. . +|
T Consensus 120 ~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~e-r~~~~~l~~-~--~l 195 (268)
T PRK11756 120 TKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWLDRLMD-W--GL 195 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHH-HHHHHHHHh-C--Cc
Confidence 566788999999999998877778999999999999999988532 23455555 889987763 4 49
Q ss_pred eecccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcC
Q 006804 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 304 (630)
Q Consensus 225 ~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~ 304 (630)
+|+||.+||...+.||||+.+.+++..|+|.||||||+++.+.. +|++|.|..+.+..
T Consensus 196 ~D~~R~~~p~~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~~~-------------~v~~~~i~~~~~~~--------- 253 (268)
T PRK11756 196 VDTFRQLNPDVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLAE-------------RCVETGIDYDIRGM--------- 253 (268)
T ss_pred EeehhhhCCCCCCcccCcCCcccccccCCceEEEEEEeCHHHHh-------------hheEeEEeHHHhCC---------
Confidence 99999999985557999999998888899999999999987643 68999998763221
Q ss_pred CCCCCCCCCCCccceEEEEe
Q 006804 305 GGMSTRLEGSDHAPVYMCLG 324 (630)
Q Consensus 305 ~g~~~~~~~SDH~PV~~~L~ 324 (630)
..+||||||+++|.
T Consensus 254 ------~~~SDH~PV~~~~~ 267 (268)
T PRK11756 254 ------EKPSDHAPIWATFK 267 (268)
T ss_pred ------CCCCCcccEEEEEe
Confidence 35799999999986
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=5.9e-40 Score=336.32 Aligned_cols=249 Identities=35% Similarity=0.634 Sum_probs=199.2
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||+|++...++ +.++|+.++|||||||||+.....+...++...||..+++.. .|+.||||++|
T Consensus 1 mri~t~Ni~g~~~~~~~---~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~-------~g~~Gvailsr 70 (254)
T TIGR00195 1 MKIISWNVNGLRARLHK---GLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ-------KGYSGVAIFSK 70 (254)
T ss_pred CEEEEEEcCcHHHhHHH---HHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC-------CCcceEEEEEc
Confidence 89999999999877665 899999999999999999987655555556678998777532 46779999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~ 160 (630)
.. |+.+..++.. ...|.+||++.+++..+.|+|+|+|+.+....+++.+
T Consensus 71 ~~----------~~~~~~~~~~---------------------~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~~~~~~~~ 119 (254)
T TIGR00195 71 EE----------PLSVRRGFGV---------------------EEEDAEGRIIMAEFDSFLVINGYFPNGSRDDSEKLPY 119 (254)
T ss_pred CC----------cceEEECCCC---------------------cccccCCCEEEEEECCEEEEEEEccCCCCCCCccHHH
Confidence 62 5544443310 1246799999999888999999999976556678889
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCC-----CCCCCchHHHHHHHHHHHHcCCcceecccccCCCC
Q 006804 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (630)
Q Consensus 161 k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~-----~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~ 235 (630)
|++|+..|.+.+..+...+.||||+||||+.+..+|+.+. ..+|.+.+ |.+|+.++. .+ |+|+||.+||..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e-~~~~~~l~~-~~--l~D~~r~~~~~~ 195 (254)
T TIGR00195 120 KLQWLEALQNYLEKLVDKDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEE-REWLDRLLE-AG--LVDTFRKFNPDE 195 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChhhccChhhcCCCcCcChHH-HHHHHHHHH-cC--CEeeecccCCCC
Confidence 9999999999999887778999999999999999887643 24565554 788988874 44 999999999984
Q ss_pred CCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCC
Q 006804 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315 (630)
Q Consensus 236 ~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SD 315 (630)
+.||||+.+.+++..++|.||||||+++.+.. .|.+|.|...... ....||
T Consensus 196 -~~~T~~~~~~~~~~~~~g~RID~i~~s~~~~~-------------~v~~~~i~~~~~~---------------~~~~SD 246 (254)
T TIGR00195 196 -GAYSWWDYRTKARDRNRGWRIDYFLVSEPLKE-------------RCVDCGIDYDIRG---------------SEKPSD 246 (254)
T ss_pred -CCCcccCCcCCccccCCceEEEEEEECHHHHh-------------hhhEEEEcHHHhc---------------CCCCCC
Confidence 56999999888877899999999999988643 6889999764211 025799
Q ss_pred ccceEEEE
Q 006804 316 HAPVYMCL 323 (630)
Q Consensus 316 H~PV~~~L 323 (630)
|+||.++|
T Consensus 247 H~Pv~~~~ 254 (254)
T TIGR00195 247 HCPVVLEF 254 (254)
T ss_pred cccEEEeC
Confidence 99999975
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.6e-37 Score=314.35 Aligned_cols=248 Identities=37% Similarity=0.669 Sum_probs=191.6
Q ss_pred CEEEEeccccccccchhhhHH-HHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEE
Q 006804 1 MKIVTYNVNGLRQRVSQFGSL-RKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l-~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIls 79 (630)
|||+||||+|++...++ + .++|..++|||||||||+.....+...++...||..+|.... ..|+.|||||+
T Consensus 1 lri~t~Nv~g~~~~~~~---~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~G~ails 72 (255)
T TIGR00633 1 MKIISWNVNGLRARLHK---LFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHGAK-----SKGYSGVAILS 72 (255)
T ss_pred CEEEEEecccHHHHhhc---cHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEeecc-----cCCcceEEEEE
Confidence 89999999999887775 5 999999999999999999865444334456789988776431 13667999999
Q ss_pred eecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHH
Q 006804 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (630)
Q Consensus 80 R~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~ 159 (630)
|.+ +..+..++.. ...+.+||++.+.++.+.|+++|+|+.+..+.++..
T Consensus 73 r~~----------~~~~~~~~~~---------------------~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~~~~~~ 121 (255)
T TIGR00633 73 KVE----------PLDVRYGFGG---------------------EEHDEEGRVITAEFDGFTVVNVYVPNGGSRGLERLE 121 (255)
T ss_pred cCC----------cceEEECCCC---------------------CcccCCCcEEEEEECCEEEEEEEccCCCCCCchhHH
Confidence 973 2223332210 135678999999888999999999998755567778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCcceecccccCCC
Q 006804 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234 (630)
Q Consensus 160 ~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~ 234 (630)
+|+.|++.|...+.+++..+.++||+||||+++..+|+.+.. .++...+ +.+|+.++. .| |.|+||..+|.
T Consensus 122 ~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--l~D~~~~~~~~ 197 (255)
T TIGR00633 122 YKLQFWDALFQYYEKELDAGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEE-REWFDELLE-AG--LVDTFRHFNPD 197 (255)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChHHccChhhcCCCCCcCHHH-HHHHHHHHH-cC--CEecchhhCCC
Confidence 899999988887766666788999999999999888775432 2333333 678888775 54 99999999998
Q ss_pred CCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCC
Q 006804 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314 (630)
Q Consensus 235 ~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~S 314 (630)
..+.||||+.+...+..+.+.||||||++..+.. .+.++.|... ..+|
T Consensus 198 ~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~i~~~-------------------~~~S 245 (255)
T TIGR00633 198 TEGAYTWWDYRSGARDRNRGWRIDYFLVSEPLAE-------------RVVDSYIDSE-------------------IRGS 245 (255)
T ss_pred CCCcCcCcCCccCccccCCceEEEEEEECHHHHh-------------hhcEeEECCC-------------------CCCC
Confidence 7667999999877767788999999999987633 5677888643 3569
Q ss_pred CccceEEEE
Q 006804 315 DHAPVYMCL 323 (630)
Q Consensus 315 DH~PV~~~L 323 (630)
||+||+++|
T Consensus 246 DH~pv~~~~ 254 (255)
T TIGR00633 246 DHCPIVLEL 254 (255)
T ss_pred CcccEEEEE
Confidence 999999998
No 6
>PRK05421 hypothetical protein; Provisional
Probab=99.85 E-value=5.6e-20 Score=189.97 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=121.2
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||++.+..-.+ ...+.| ..+|||||||||+.... + ..++...||...|..+. ....+++||||++|
T Consensus 44 lri~t~NI~~~~~~~~~--~~l~~l-~~~~DiI~LQEv~~~~~-~-~~~~~~~~~~~~~~~~~---~~~~~~~GvaiLSR 115 (263)
T PRK05421 44 LRLLVWNIYKQQRAGWL--SVLKNL-GKDADLVLLQEAQTTPE-L-VQFATANYLAADQAPAF---VLPQHPSGVMTLSK 115 (263)
T ss_pred eeEEEEEccccccccHH--HHHHHh-ccCCCEEEEEecccCcc-h-HHHhhcccchHHhcccc---ccCCCccceeEeee
Confidence 69999999998765222 244555 89999999999976432 2 12344455654443221 12346789999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEE-Ee--c---ceEEEEEEecCCCCCCc
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-TD--H---GHFILFNVYGPRADSED 154 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~ii-v~--~---~~~~LinVY~P~~~~~~ 154 (630)
.+ +.....+.+. + ..-.++|.++ +. . +.+.|+|+|+++.....
T Consensus 116 ~p-----------i~~~~~~~~~------------~--------~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~ 164 (263)
T PRK05421 116 AH-----------PVYCCPLRER------------E--------PWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLGV 164 (263)
T ss_pred cc-----------cceeeccCCC------------C--------ccccCcceeEEEEEEeCCCCEEEEEEECccccCcCh
Confidence 84 2111111000 0 0011233332 22 2 35899999997653321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceecccccCCC
Q 006804 155 TVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 234 (630)
Q Consensus 155 ~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~ 234 (630)
.. +...+..|...+.. ...|+||+||||..... . ..+|..++...+ +.|.+ .|.
T Consensus 165 ~~----r~~q~~~l~~~~~~---~~~p~Il~GDFN~~~~~-----------~---~~~l~~~~~~~~--l~~~~---~~~ 218 (263)
T PRK05421 165 DV----YSKQLEPIGDQIAH---HSGPVILAGDFNTWSRK-----------R---MNALKRFARELG--LKEVR---FTD 218 (263)
T ss_pred HH----HHHHHHHHHHHHHh---CCCCEEEEcccccCccc-----------c---hHHHHHHHHHcC--CCccC---cCC
Confidence 22 33344444444432 35799999999963211 0 134556665544 55532 111
Q ss_pred CCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCC
Q 006804 235 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314 (630)
Q Consensus 235 ~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~S 314 (630)
... + ..++.||||||++ .+ .+.++.+.. ..+|
T Consensus 219 ~~~-~-----------~~~~~~ID~I~~~-~~---------------~v~~~~v~~--------------------~~~S 250 (263)
T PRK05421 219 DQR-R-----------RAFGRPLDFVFYR-GL---------------NVSKASVLV--------------------TRAS 250 (263)
T ss_pred ccc-c-----------cccCCCcceEEEC-Cc---------------EEEEEEcCC--------------------CCCC
Confidence 110 0 1125789999984 32 567777754 2689
Q ss_pred CccceEEEEeec
Q 006804 315 DHAPVYMCLGEV 326 (630)
Q Consensus 315 DH~PV~~~L~~~ 326 (630)
||+||+++|.+.
T Consensus 251 DH~Pv~a~l~l~ 262 (263)
T PRK05421 251 DHNPLLVEFSLK 262 (263)
T ss_pred CccCEEEEEEec
Confidence 999999999763
No 7
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.85 E-value=5.8e-21 Score=200.68 Aligned_cols=253 Identities=25% Similarity=0.421 Sum_probs=190.2
Q ss_pred EEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCC-cEEEeecccCCCCCCcceeEEEEEe
Q 006804 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 2 rIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
.|+.|||.+++...+. .-..++.....|++|+|||+.+-+..+...-...|| +.++.++ -++.+|.|++.+++
T Consensus 65 ~i~~~~i~~~~~~~~~--~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~~ 138 (335)
T KOG1294|consen 65 NICPWDIAGLEACEKF--SGDPEISSELRDLQCLLETKCTIDSGPCSHPTEKGYTHSLLSCA----SKKDGYSGEIDYSK 138 (335)
T ss_pred ecCchhhhhhhhhhcc--ccchhccccchhhhhhhhccceeccCcceecccCCcccceeecc----cccCCccceeeeee
Confidence 6788999999887765 366678888899999999998744443333347889 6677765 35578999999998
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~ 160 (630)
. .|+.+..++..+ + ..++..||+|++++..+.++|.|+|+...+ .....+
T Consensus 139 ~----------~p~~v~~~~~~~------------~-------s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~-~~~~~~ 188 (335)
T KOG1294|consen 139 F----------KPLKVHYGFGAM------------G-------SDHRPVGRVIIAEFEIFILINTYVPNIGGG-LVNLVY 188 (335)
T ss_pred c----------ccceeeeccccc------------C-------CccCccceEEEEeecceeeccccCcccccc-cchhhh
Confidence 7 366666554210 1 247889999999999999999999998763 344444
Q ss_pred H--HHHHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCcccc---CC-------CCCCCCchHHHHHH-HHHHHHcCCcc
Q 006804 161 K--LQFFHVLQKRWEFLLCQ---GRRIFVVGDLNIAPAAIDR---CD-------AGPDFAKNEFRIWF-RSMLVESGGSF 224 (630)
Q Consensus 161 k--~~fl~~L~~~i~~l~~~---g~pVII~GDFN~~~~~iD~---~~-------~~~~~~~~~~r~~l-~~lL~~~g~~l 224 (630)
+ ..+-..++..+..+-.. ..+++++||.|..|..+|. .. ...+|.+++ |.|| ..++. . +.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~-R~~~~~~~~~-~-~~~ 265 (335)
T KOG1294|consen 189 RILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGNTLSNAGFTPEE-RDSFFAELLE-K-GPL 265 (335)
T ss_pred hhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccccccccCCcCCCCCCHHH-hhhHHHhhcc-C-Ccc
Confidence 4 44444444444443211 2489999999999999884 11 124677666 8998 56653 2 369
Q ss_pred eecccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcC
Q 006804 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 304 (630)
Q Consensus 225 ~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~ 304 (630)
+|+||..|+.....||+|....+.+.++.+.|+||++++...+. .+.++.|..+
T Consensus 266 iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n-------------~~r~~~Ic~r------------- 319 (335)
T KOG1294|consen 266 IDTYRELHKDQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGPN-------------NGRRFYICSR------------- 319 (335)
T ss_pred eeehhhhcCCccccccchhhccccccCCCCCceeEEEecCcCCC-------------CCceeeeecC-------------
Confidence 99999999999877999999999999999999999999998765 6788888775
Q ss_pred CCCCCCCCCCCccceEEEEe
Q 006804 305 GGMSTRLEGSDHAPVYMCLG 324 (630)
Q Consensus 305 ~g~~~~~~~SDH~PV~~~L~ 324 (630)
.+.+||||||++.|.
T Consensus 320 -----~~~gsdh~pi~~~~~ 334 (335)
T KOG1294|consen 320 -----PIHGSDHCPITLEFF 334 (335)
T ss_pred -----ccCCCCCCCeeeeec
Confidence 158999999999885
No 8
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.76 E-value=3.8e-18 Score=179.47 Aligned_cols=182 Identities=34% Similarity=0.422 Sum_probs=127.6
Q ss_pred hhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCC
Q 006804 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG 201 (630)
Q Consensus 122 ~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~ 201 (630)
++..+|.+||++++++..+++++||+|....+...+ ++.|+..|..+++.+..+|+++++ |+++..+|.....
T Consensus 5 ~~~~~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~~~---~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~~ 77 (335)
T KOG1294|consen 5 EALELDSEGRCVIVDKEMFVLINVYCPRNSPEISKR---RLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEAC 77 (335)
T ss_pred hhhhhhccCCeeeeecccccccceeccccCCcchhh---hhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhhh
Confidence 345688999999999988999999999998755444 899999999999999999999998 8877776654332
Q ss_pred CCCCchH-HHHHHHHHHHHcCC-cceecccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCccccccccccccc
Q 006804 202 PDFAKNE-FRIWFRSMLVESGG-SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 279 (630)
Q Consensus 202 ~~~~~~~-~r~~l~~lL~~~g~-~l~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~ 279 (630)
..+.... ...++..++-.... ..+|..+..||+ .+.||+|.........+|+.+|||+.+.+-.++
T Consensus 78 ~~~~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v~----------- 145 (335)
T KOG1294|consen 78 EKFSGDPEISSELRDLQCLLETKCTIDSGPCSHPT-EKGYTHSLLSCASKKDGYSGEIDYSKFKPLKVH----------- 145 (335)
T ss_pred hccccchhccccchhhhhhhhccceeccCcceecc-cCCcccceeecccccCCccceeeeeecccceee-----------
Confidence 2222110 01222222211111 248999999999 667999999888888899999999998653211
Q ss_pred ccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccceEEEEeecCCCCCCCChhHHhhccccccchhHHHHH
Q 006804 280 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 354 (630)
Q Consensus 280 ~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SDH~PV~~~L~~~~~~~~~~~p~l~~~~~~~~~g~~~~l~~ 354 (630)
|..| .++|||+||...+... .....|...|.|.+-+.++.++-
T Consensus 146 -----------------------~~~~----~~~s~h~~~g~~i~~e-----~e~~~l~~~y~p~~~~~~~~~~~ 188 (335)
T KOG1294|consen 146 -----------------------YGFG----AMGSDHRPVGRVIIAE-----FEIFILINTYVPNIGGGLVNLVY 188 (335)
T ss_pred -----------------------eccc----ccCCccCccceEEEEe-----ecceeeccccCcccccccchhhh
Confidence 1111 1589999999876543 23456667777766666555443
No 9
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.72 E-value=1.9e-16 Score=178.26 Aligned_cols=182 Identities=21% Similarity=0.246 Sum_probs=95.3
Q ss_pred CEEEEeccccc---------------cccchhhhHHHHHHhhcCCcEEEEecccccc-ccchhHHHhhcCCcEEEeeccc
Q 006804 1 MKIVTYNVNGL---------------RQRVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRT 64 (630)
Q Consensus 1 mrIlSwNInGl---------------r~~~~r~~~l~~~L~~l~aDIIcLQETk~~~-~~l~~~l~~~~GY~~~fs~~~~ 64 (630)
+|||||||..- -..-.|+..|.+.|..++||||||||+.... +++....+...||..+|.....
T Consensus 255 frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~ 334 (606)
T PLN03144 255 FTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTT 334 (606)
T ss_pred EEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCC
Confidence 58999999631 1112234569999999999999999994321 1222334556799988753210
Q ss_pred C--CCCCCcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhc--ccCCCCcEEEEecc--
Q 006804 65 S--DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL--KIDSEGRCVITDHG-- 138 (630)
Q Consensus 65 ~--~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~--~~D~eGR~iiv~~~-- 138 (630)
. ..+..+..|+|||+|.. .|++.+.. ..+.+-.++... +.......+ .+.+. ..|.-+.++.++..
T Consensus 335 ~~~~~~~~~~DGcAIFyr~d-rFeLv~~~---~ief~~~~lslt--~~~~~s~~~--~~~l~Rl~kdNVAliv~Le~k~~ 406 (606)
T PLN03144 335 EVYTGNTYVIDGCATFFRRD-RFSLVKKY---EVEFNKAAQSLT--EALIPSAQK--KAALNRLLKDNVALIVVLEAKFG 406 (606)
T ss_pred ccccccccCCceeEEEEECc-ceEEEEee---eeeccchhhccC--ccccccccc--hhhhhhhccCcEEEEEEEEEecc
Confidence 0 01112346999999983 56554210 011110011000 000000000 00000 12333334444332
Q ss_pred -----------eEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEeCCCCCCCCc
Q 006804 139 -----------HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-QGRRIFVVGDLNIAPAA 194 (630)
Q Consensus 139 -----------~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~-~g~pVII~GDFN~~~~~ 194 (630)
.|.|+|+|+-.... ....|+.....|.+.++.+.. .+.|||||||||+.++.
T Consensus 407 ~~~~~~~~~~~~l~VaNTHL~~~p~----~~dvRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S 470 (606)
T PLN03144 407 NQGADNGGKRQLLCVANTHIHANQE----LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 470 (606)
T ss_pred cccccCCCCccEEEEEEeeeccCCc----cchhHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCC
Confidence 48899999833221 123345555556666665532 36799999999998864
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.70 E-value=1.4e-16 Score=158.01 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=42.6
Q ss_pred EEeccccccccc---hhhhHHHHHHhhcCCcEEEEeccccc--cccchhHHHhhcCC-cEEEeecccCCCCCC--cceeE
Q 006804 4 VTYNVNGLRQRV---SQFGSLRKLLDSFDADIICFQETKLR--RQELKSDLVMADGY-ESFFSCTRTSDKGRT--GYSGV 75 (630)
Q Consensus 4 lSwNInGlr~~~---~r~~~l~~~L~~l~aDIIcLQETk~~--~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~--GysGV 75 (630)
+||||+++..+. .+...|.++|..++||||||||++.. ...+.. .+....+ ..++.... .+.. +..|+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~g~ 76 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLSELLEE-QLRGYLGYYGSFWPGN---SPPSDAGGYGV 76 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHH-HHHTCTTHEEEEEETS---SSTTCSSSEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhh-hcccccccccceeccc---cccccccCceE
Confidence 799999943221 11234999999999999999999743 222221 1222222 23332221 0000 24699
Q ss_pred EEEEeec
Q 006804 76 ATFCRVK 82 (630)
Q Consensus 76 AIlsR~~ 82 (630)
+||+|.+
T Consensus 77 ~i~~r~~ 83 (249)
T PF03372_consen 77 AILSRSP 83 (249)
T ss_dssp EEEESSC
T ss_pred EEEEccc
Confidence 9999984
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.69 E-value=4.5e-16 Score=157.75 Aligned_cols=232 Identities=20% Similarity=0.167 Sum_probs=126.4
Q ss_pred CEEEEecccccccc----chhhhHHHHHHhhcCCcEEEEecccc----ccccchh---HHHhhcCCcEEEeecccCCCCC
Q 006804 1 MKIVTYNVNGLRQR----VSQFGSLRKLLDSFDADIICFQETKL----RRQELKS---DLVMADGYESFFSCTRTSDKGR 69 (630)
Q Consensus 1 mrIlSwNInGlr~~----~~r~~~l~~~L~~l~aDIIcLQETk~----~~~~l~~---~l~~~~GY~~~fs~~~~~~~gr 69 (630)
|+|+||||+-.... +.. ..+.+.+...++|||||||+.- .++.+.. .+....+..++++.........
T Consensus 10 ~~v~TyNih~~~~~~d~r~~~-~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 88 (259)
T COG3568 10 FKVLTYNIHKGFGAFDRRFDL-PRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYG 88 (259)
T ss_pred eEEEEEEEEEccCccCceecH-HHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCccccchhhhhhhcc
Confidence 58999999643332 222 3489999999999999999963 1222211 1223333333332211000022
Q ss_pred CcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEE-E--Ee---cceEEEE
Q 006804 70 TGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-I--TD---HGHFILF 143 (630)
Q Consensus 70 ~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~i-i--v~---~~~~~Li 143 (630)
.+..|+||++|.+ +..-... .+.. ..+.|.|-+ . ++ ++.|.|+
T Consensus 89 ~~~~GnaiLS~~p-----------i~~v~~~-------------~lp~-------~~~~~~Rgal~a~~~~~~g~~l~V~ 137 (259)
T COG3568 89 EGQHGNAILSRLP-----------IRDVENL-------------ALPD-------PTGLEPRGALLAEIELPGGKPLRVI 137 (259)
T ss_pred cceeeeEEEecCc-----------ccchhhc-------------cCCC-------CCCCCCceeEEEEEEcCCCCEEEEE
Confidence 4567999999763 2111111 0000 012244432 2 22 3489999
Q ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCc
Q 006804 144 NVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS 223 (630)
Q Consensus 144 nVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~ 223 (630)
|+|+--.. .. |++.+..|.+.+ .+...+|+|++||||..++.-++.-.. +..+. .+..
T Consensus 138 ~~HL~l~~---~~----R~~Q~~~L~~~~--~l~~~~p~vl~GDFN~~p~s~~yr~~~------------~~~~~-~~~~ 195 (259)
T COG3568 138 NAHLGLSE---ES----RLRQAAALLALA--GLPALNPTVLMGDFNNEPGSAEYRLAA------------RSPLN-AQAA 195 (259)
T ss_pred EEeccccH---HH----HHHHHHHHHhhc--cCcccCceEEEccCCCCCCCccceecc------------CCchh-hccc
Confidence 99996221 22 344444444311 123456999999999988775553211 01111 1113
Q ss_pred ceecccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCc
Q 006804 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 303 (630)
Q Consensus 224 l~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w 303 (630)
+.+++.-.++... -||-+.. ...||||||+++.+ .+..+.+..+.. |
T Consensus 196 ~~~~~~~a~~~~~--~tfps~~-------p~lriD~Ifvs~~~---------------~i~~~~v~~~~~---------a 242 (259)
T COG3568 196 LTGAFAPAVGRTI--RTFPSNT-------PLLRLDRIFVSKEL---------------AIRSVHVLTDRL---------A 242 (259)
T ss_pred cccccCcccCccc--CCCCCCC-------ccccccEEEecCcc---------------cEEEEEeecCCC---------c
Confidence 5555555544321 1222221 13589999999976 567777776511 1
Q ss_pred CCCCCCCCCCCCccceEEEEeec
Q 006804 304 KGGMSTRLEGSDHAPVYMCLGEV 326 (630)
Q Consensus 304 ~~g~~~~~~~SDH~PV~~~L~~~ 326 (630)
-..|||.||.++|.+.
T Consensus 243 -------~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 243 -------RVASDHLPLLAELRLK 258 (259)
T ss_pred -------cccccccceEEEEecC
Confidence 2689999999999864
No 12
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.65 E-value=6.1e-16 Score=159.68 Aligned_cols=256 Identities=18% Similarity=0.190 Sum_probs=141.9
Q ss_pred CEEEEeccccccc----cchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEE
Q 006804 1 MKIVTYNVNGLRQ----RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVA 76 (630)
Q Consensus 1 mrIlSwNInGlr~----~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVA 76 (630)
|||+|.|++|+.- +..|.+.+.+++.....||+.|||+|..+|.-.-...+..-|.+...+. .|-.| +|++
T Consensus 9 lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FH----SGimG-aGL~ 83 (422)
T KOG3873|consen 9 LRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFH----SGIMG-AGLC 83 (422)
T ss_pred eeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhh----ccccc-CceE
Confidence 6999999999842 2222245888999999999999999865543211112333454322222 24344 6999
Q ss_pred EEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEE---Eec--ceEEEEEEecCC--
Q 006804 77 TFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI---TDH--GHFILFNVYGPR-- 149 (630)
Q Consensus 77 IlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~ii---v~~--~~~~LinVY~P~-- 149 (630)
+|+|.+|-= -+.-...+.|.+.. ... =++| .|..|- +.+ ..+.+.|.|+.+
T Consensus 84 vfSK~PI~~-------t~~~~y~lNG~p~~---i~r--GDWf----------~GK~Vgl~~l~~~g~~v~~yntHLHAeY 141 (422)
T KOG3873|consen 84 VFSKHPILE-------TLFHRYSLNGYPHA---IHR--GDWF----------GGKGVGLTVLLVGGRMVNLYNTHLHAEY 141 (422)
T ss_pred EeecCchhh-------hhhhccccCCccce---eee--cccc----------ccceeEEEEEeeCCEEeeeeehhccccc
Confidence 999985310 00111222222211 000 0111 122221 122 234555554433
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceeccc
Q 006804 150 ADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR 229 (630)
Q Consensus 150 ~~~~~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R 229 (630)
+.. .++=+..|..+.-.|.++++...+.+.-||++||||.-|.++-++ +|...| |+|+|+
T Consensus 142 ~rq-~D~YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~~-----------------ll~~a~--l~daw~ 201 (422)
T KOG3873|consen 142 DRQ-NDEYLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLGHK-----------------LLLSAG--LVDAWT 201 (422)
T ss_pred ccc-CchhhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCcccccee-----------------eeeccc--hhhhHh
Confidence 332 223334455556667788888888889999999999887765442 222233 677777
Q ss_pred ccCCCC---------------CCccccCCCCC------CCccCCccceEEEEEEeCCCcccccccccccccccceeeeEe
Q 006804 230 SKHPER---------------REAYTCWPSNT------GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 288 (630)
Q Consensus 230 ~~hP~~---------------~~~yT~ws~~~------~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~I 288 (630)
..|++. +|. ||-+... .....-.+.||||||+.+.... ....++++
T Consensus 202 ~~h~~q~e~~~~r~s~~~~l~~g~-tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~------------~~~a~~~~ 268 (422)
T KOG3873|consen 202 SLHLDQCESDSFRLSEDKELVEGN-TCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCN------------AKIAEVEF 268 (422)
T ss_pred hhchhhhcCcccccchhhhhhcCC-cccCcchhhhHHHhCCCCccceeeeEEEEcCcceE------------EEeeeEEe
Confidence 777653 232 4433211 1111235889999999876421 13344444
Q ss_pred ecccccCCCCCCCCcCCCCCCCCCCCCccceEEEEeecCCC
Q 006804 289 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 329 (630)
Q Consensus 289 l~~~~~~~~~~~~~w~~g~~~~~~~SDH~PV~~~L~~~~~~ 329 (630)
... + .| ......|||..+++.|.+.+..
T Consensus 269 t~~-r--vP----------~~d~s~SDH~Al~a~L~I~~~~ 296 (422)
T KOG3873|consen 269 TEP-R--VP----------GEDCSYSDHEALMATLKIFKQP 296 (422)
T ss_pred cCC-C--CC----------CCCCCccchhhheeEEEeecCC
Confidence 331 1 11 1235789999999999987643
No 13
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.65 E-value=7.3e-15 Score=153.41 Aligned_cols=166 Identities=14% Similarity=0.161 Sum_probs=84.4
Q ss_pred CEEEEeccccccc-------cchhhhHHHHHHhhcCCcEEEEecccccc--ccchhHHHhhcCCcEEEeeccc-CC----
Q 006804 1 MKIVTYNVNGLRQ-------RVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTRT-SD---- 66 (630)
Q Consensus 1 mrIlSwNInGlr~-------~~~r~~~l~~~L~~l~aDIIcLQETk~~~--~~l~~~l~~~~GY~~~fs~~~~-~~---- 66 (630)
||||||||+.+.. .-.|...+...+...++|||||||+.-.. +.+.+.+...-.|...+..... .+
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~~~g~~~~~ 80 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRSKKGWDKTL 80 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccccccchhcc
Confidence 7999999986432 22233446667788899999999995432 1232222222223221110000 00
Q ss_pred ----CCCCcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEE--e--cc
Q 006804 67 ----KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVIT--D--HG 138 (630)
Q Consensus 67 ----~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv--~--~~ 138 (630)
.....-.|++||+|.+ +.....+ .+.. . .+.+. ....| ++.+ + ..
T Consensus 81 g~~~~~~~~~~G~~iLSr~P-----------i~~~~~~--~f~~--~---~~~d~--------~~~kg-~l~a~i~~~g~ 133 (283)
T TIGR03395 81 GNYSSSALEDGGVAIVSKWP-----------IEEKIQY--IFNK--G---CGADN--------LSNKG-FAYVKINKNGK 133 (283)
T ss_pred ccccccCccCCEEEEEECCC-----------ccccEEE--EccC--C---CCCcc--------ccCCc-eEEEEEecCCe
Confidence 0011224999999984 3211111 0000 0 00000 00112 2222 2 24
Q ss_pred eEEEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHHHH-HhcCCeEEEeCCCCCCCC
Q 006804 139 HFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPA 193 (630)
Q Consensus 139 ~~~LinVY~P~~~~~~--~~r~~~k~~fl~~L~~~i~~l-~~~g~pVII~GDFN~~~~ 193 (630)
.+.|+|+|+-+..... ......|...+..|.+++... +..+.+|||+||||..+.
T Consensus 134 ~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~ 191 (283)
T TIGR03395 134 KFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKG 191 (283)
T ss_pred EEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCC
Confidence 5899999997643210 011234667777777776542 234678999999998654
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=99.61 E-value=4.3e-14 Score=173.55 Aligned_cols=263 Identities=17% Similarity=0.192 Sum_probs=131.1
Q ss_pred CEEEEeccccccc---cchhhhHHHHHHhhc-CCcEEEEeccccccc-------cc-----hhHHHhhcCCcEEEeeccc
Q 006804 1 MKIVTYNVNGLRQ---RVSQFGSLRKLLDSF-DADIICFQETKLRRQ-------EL-----KSDLVMADGYESFFSCTRT 64 (630)
Q Consensus 1 mrIlSwNInGlr~---~~~r~~~l~~~L~~l-~aDIIcLQETk~~~~-------~l-----~~~l~~~~GY~~~fs~~~~ 64 (630)
+||+||||+.+.. .... ..+..+|+.+ ++|||||||+.-... +. ..+.+...||.+|......
T Consensus 11 l~VlTyNv~~~~~~~~~~~~-~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 89 (1452)
T PTZ00297 11 ARVLSYNFNILPRGCGGFQH-ERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELKARGFHHYVISKQP 89 (1452)
T ss_pred eEEEEEEccccCCCcccccH-HHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHHHHHhcCCceeEeecCc
Confidence 6999999985532 1222 3488899996 779999999964210 00 0123345698765432111
Q ss_pred CCCC-----CCcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCc-EEEEec-
Q 006804 65 SDKG-----RTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH- 137 (630)
Q Consensus 65 ~~~g-----r~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~~- 137 (630)
.-.. --+-.|+||++|++ +...+.+. +.. ....++ .-..|- .+.++.
T Consensus 90 ~~~~~~~~~~~~~~G~AILSR~P-----------I~~~~~~~-l~~-------~~~~~~-------~~~RG~L~a~I~vp 143 (1452)
T PTZ00297 90 SYLTMLRYNVCSDNGLIIASRFP-----------IWQRGSYT-FRN-------HERGEQ-------SVRRGCLFAEVEVP 143 (1452)
T ss_pred cccccccCccccCCEEEEEECCC-----------hhhceeee-cCc-------cccccc-------ccccceEEEEEEcc
Confidence 0000 00234999999994 32222110 000 000000 001121 122322
Q ss_pred ------ceEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHH---------hcCCeEEEeCCCCCCCCccccCCCCC
Q 006804 138 ------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL---------CQGRRIFVVGDLNIAPAAIDRCDAGP 202 (630)
Q Consensus 138 ------~~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~---------~~g~pVII~GDFN~~~~~iD~~~~~~ 202 (630)
+.+.++|+|+-..... ..| +..+.+|.++++..+ ....|+||+||||+.. +|+.....
T Consensus 144 ~~~g~~~~v~v~~tHL~~~~~~-~~R----~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~--~~~~~~~~ 216 (1452)
T PTZ00297 144 LAEGGSQRIVFFNVHLRQEDSL-PST----SSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNING--IDPHNGGH 216 (1452)
T ss_pred ccCCCCceEEEEEeCCCCCCCc-chH----HHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCcc--ccccccCC
Confidence 3689999998665432 223 344455555554311 2456999999999631 22211100
Q ss_pred CCCchHHHHHHHHHHHHcCCcceecccccC---CCCCCccccCCCCC-CCccCCccceEEEEEEeCCCcccccccccccc
Q 006804 203 DFAKNEFRIWFRSMLVESGGSFFDVFRSKH---PERREAYTCWPSNT-GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 278 (630)
Q Consensus 203 ~~~~~~~r~~l~~lL~~~g~~l~D~~R~~h---P~~~~~yT~ws~~~-~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~ 278 (630)
...+....++.+ ...+.++.|+|+..+ |......+||.... -.+......||||||+++.+
T Consensus 217 --~s~e~~~ml~~l-~~~~~~l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v------------ 281 (1452)
T PTZ00297 217 --PTKRFQELLNEL-QDLGSGVREVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCV------------ 281 (1452)
T ss_pred --ccHHHHHHHHHh-hhccccHhHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEeCCc------------
Confidence 011222333332 233334666654332 22222244444221 11111223699999998764
Q ss_pred cccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccceEEEEeec
Q 006804 279 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 326 (630)
Q Consensus 279 ~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SDH~PV~~~L~~~ 326 (630)
.|.++.|...... ....| ...|||+||+++|.+.
T Consensus 282 ---~v~~~~v~~~~~~----~~~~~-------~~~SDH~Pv~a~l~l~ 315 (1452)
T PTZ00297 282 ---QVEKPRIEKFVVS----SRRPY-------TYLSDHFGVSARLTLP 315 (1452)
T ss_pred ---eEEEEEEeccccc----CCCCC-------CCcCcCccEEEEEEeC
Confidence 5667777442110 00112 4689999999999874
No 15
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.49 E-value=2.6e-13 Score=135.38 Aligned_cols=198 Identities=17% Similarity=0.239 Sum_probs=118.8
Q ss_pred EEEEecccccc--ccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhh-cCCcEEEeecccCCCCCCcceeEEEE
Q 006804 2 KIVTYNVNGLR--QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA-DGYESFFSCTRTSDKGRTGYSGVATF 78 (630)
Q Consensus 2 rIlSwNInGlr--~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~-~GY~~~fs~~~~~~~gr~GysGVAIl 78 (630)
.+++|||.||. +...|.+++..+|..+.||||||||+--..... +-.. ..|..|++. ..+|.|.+++
T Consensus 101 S~~~WnidgLdln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~---~~K~~s~y~i~~~~-------~~~~~~~~~l 170 (349)
T KOG2756|consen 101 SLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSY---LKKRSSNYEIITGH-------EEGYFTAIML 170 (349)
T ss_pred EEEEeeccccccchHHHHHHHHHHHHHhcCCCEEEEeecCchhhHH---HHHhhhheeEEEec-------cceeeeeeee
Confidence 57899999874 334455679999999999999999994321111 1122 233444432 2467788888
Q ss_pred EeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEE-Ee----cceEEEEEEecCCCCCC
Q 006804 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-TD----HGHFILFNVYGPRADSE 153 (630)
Q Consensus 79 sR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~ii-v~----~~~~~LinVY~P~~~~~ 153 (630)
.+.+++-+..++ + ++ .....+|-+. ++ ...+.+++.|+-.....
T Consensus 171 ~~s~~~Vks~~~---------i--------~F--------------~NS~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h 219 (349)
T KOG2756|consen 171 KKSRVKVKSQEI---------I--------PF--------------PNSKMMRNLLIVEVNVSGNKLCLMTSHLESTRGH 219 (349)
T ss_pred ehhhcCccccce---------e--------cc--------------CcchhhheeEEEEEeecCceEEEEeccccCCCCC
Confidence 776433222110 0 00 0112344432 22 24589999998776666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceecccccC-
Q 006804 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH- 232 (630)
Q Consensus 154 ~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~h- 232 (630)
.++|..+-..-++.+++.|+.+ .+..||++||+|..-....+|. .+ . +++|+|-.+.
T Consensus 220 ~P~r~~qF~~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~ev~r~~-----lP-------------D--~~vDvWE~lg~ 277 (349)
T KOG2756|consen 220 APERMNQFKMVLKKMQEAIESL--PNATVIFGGDTNLRDREVTRCG-----LP-------------D--NIVDVWEFLGK 277 (349)
T ss_pred ChHHHHHHHHHHHHHHHHHHhC--CCceEEEcCcccchhhhcccCC-----CC-------------c--hHHHHHHHhCC
Confidence 6666554334455666666654 7789999999996533322221 11 1 3788888777
Q ss_pred CCCCCccccCCCCCCCccCC--ccceEEEEEEe
Q 006804 233 PERREAYTCWPSNTGAEQFN--YGTRIDHILCA 263 (630)
Q Consensus 233 P~~~~~yT~ws~~~~a~~~n--~gsRIDyILvs 263 (630)
|...+ |||-+.......++ ...|+|+||+.
T Consensus 278 p~~~~-FTwDT~~N~nl~G~~a~k~RfDRi~~r 309 (349)
T KOG2756|consen 278 PKHCQ-FTWDTQMNSNLGGTAACKLRFDRIFFR 309 (349)
T ss_pred CCcCc-eeeecccCcccchhHHHHHHHHHHhhh
Confidence 66554 99876654333322 33699999994
No 16
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.46 E-value=2.4e-12 Score=138.96 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=89.1
Q ss_pred hhHHHHHHhhcCCcEEEEecccccccc-chhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEeecCCCCCcccccceee
Q 006804 18 FGSLRKLLDSFDADIICFQETKLRRQE-LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAA 96 (630)
Q Consensus 18 ~~~l~~~L~~l~aDIIcLQETk~~~~~-l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~ 96 (630)
...|+..|..++||||||||+...... +....+...||..+|... .+ .+..||||+++.. .|++... .++..
T Consensus 151 ~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~r~----t~-~KthG~ai~w~~~-~F~lv~~-~~l~y 223 (495)
T KOG2338|consen 151 SQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRR----TG-TKTHGVAILWHSA-KFKLVNH-SELNY 223 (495)
T ss_pred hHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEEEec----cC-CCCceEEEEEecc-cceeccc-chhhc
Confidence 356999999999999999999754332 223445678999877643 12 2336999999873 5665411 11110
Q ss_pred eecccccccccCcccccCcccccchhhcccCCCCcEEEEec-------ceEEEEEEecCCCCCCchHHHHHHHHHHHHHH
Q 006804 97 EEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH-------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169 (630)
Q Consensus 97 eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~-------~~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~ 169 (630)
-. .-..+...|.-|-+|.+++ ..+.|+|.|+-.......+|+.+ ...|.
T Consensus 224 ~~--------------------~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q----~~iiL 279 (495)
T KOG2338|consen 224 FD--------------------SGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQ----VYIIL 279 (495)
T ss_pred cc--------------------ccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHH----HHHHH
Confidence 00 0112334455666666654 25888998875544333455444 44444
Q ss_pred HHHHHHHhc---CCeEEEeCCCCCCCCc
Q 006804 170 KRWEFLLCQ---GRRIFVVGDLNIAPAA 194 (630)
Q Consensus 170 ~~i~~l~~~---g~pVII~GDFN~~~~~ 194 (630)
+.+++.... .-|+|+|||||+.++.
T Consensus 280 ~~~~~~~~~~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338|consen 280 AELEKMSKSSKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred HHHHHHHhhcccCCCeEEecCCCCCCCC
Confidence 444444333 4599999999998853
No 17
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.45 E-value=3.4e-12 Score=130.65 Aligned_cols=150 Identities=14% Similarity=0.178 Sum_probs=88.0
Q ss_pred CEEEEeccccccccch-hhh-HHHHHHhhc-CCcEEEEecccccccc--------------ch-hH-H-----HhhcCCc
Q 006804 1 MKIVTYNVNGLRQRVS-QFG-SLRKLLDSF-DADIICFQETKLRRQE--------------LK-SD-L-----VMADGYE 56 (630)
Q Consensus 1 mrIlSwNInGlr~~~~-r~~-~l~~~L~~l-~aDIIcLQETk~~~~~--------------l~-~~-l-----~~~~GY~ 56 (630)
.+++|||.+|-..... ++. .+..+|... .+||++|||+-.-+.. +. .+ . ...+++.
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~l~~~srpgm~ 104 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWNLGTRSRPNQV 104 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCcccEEEEccCccCCCce
Confidence 4899999999854332 222 488888875 5999999998432111 01 00 0 0134566
Q ss_pred EEEeecccCCCCCCcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEe
Q 006804 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD 136 (630)
Q Consensus 57 ~~fs~~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~ 136 (630)
++|....+ .+ .|..|+||++|.+. . ...-+. . .......++.++
T Consensus 105 YiY~~aiD--~~-ggr~glAIlSr~~a----------~-~~~~l~---~-------------------p~~~~Rpilgi~ 148 (271)
T PRK15251 105 YIYYSRVD--VG-ANRVNLAIVSRRRA----------D-EVIVLR---P-------------------PTVASRPIIGIR 148 (271)
T ss_pred EEEEeccc--CC-CCceeEEEEecccc----------c-ceEEec---C-------------------CCCcccceEEEE
Confidence 66654432 23 34459999999842 1 111110 0 011233456667
Q ss_pred cceEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHH-HHHhcCCeEEEeCCCCCCCCc
Q 006804 137 HGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWE-FLLCQGRRIFVVGDLNIAPAA 194 (630)
Q Consensus 137 ~~~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~-~l~~~g~pVII~GDFN~~~~~ 194 (630)
.+.++++++|+.+.+.. + +...++.+.+... . ....++||+||||..|+.
T Consensus 149 i~~~~ffstH~~a~~~~--d----a~aiV~~I~~~f~~~--~~~~pw~I~GDFNr~P~s 199 (271)
T PRK15251 149 IGNDVFFSIHALANGGT--D----AGAIVRAVHNFFRPN--MRHINWMIAGDFNRSPDR 199 (271)
T ss_pred ecCeEEEEeeecCCCCc--c----HHHHHHHHHHHHhhc--cCCCCEEEeccCCCCCcc
Confidence 77789999999987432 2 3344555555543 2 123689999999987765
No 18
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This presumed zinc-binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to IPR000380 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=99.41 E-value=2.3e-13 Score=102.47 Aligned_cols=45 Identities=40% Similarity=0.897 Sum_probs=40.9
Q ss_pred CCCCCCCCCceeeEecCCCCCCCeeeeeccCCCCCCCCCCCCCCceeeccCC
Q 006804 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 626 (630)
Q Consensus 575 p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~~ 626 (630)
|.|. ||++|++++++|.|+|.||.||.|++... .+|+||+|.|+.
T Consensus 1 p~C~-Cg~~~~~~~s~k~~~N~GR~Fy~C~~~~~------~~C~fF~W~De~ 45 (45)
T PF06839_consen 1 PKCP-CGEPAVRRTSKKTGPNPGRRFYKCPNYKD------KGCNFFQWEDEM 45 (45)
T ss_pred CCCC-CCCEeEEEEEeCCCCCCCCcceECCCCCC------CCcCCEEeccCc
Confidence 7899 99999999999999999999999998433 789999999974
No 19
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.34 E-value=4.4e-12 Score=114.04 Aligned_cols=98 Identities=26% Similarity=0.368 Sum_probs=53.8
Q ss_pred EEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCch-HHHHHHHHHHH
Q 006804 140 FILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-EFRIWFRSMLV 218 (630)
Q Consensus 140 ~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~-~~r~~l~~lL~ 218 (630)
|+|+|||+|+.. .+..|++.|...+... ...++||+||||..+..++... .. ...+.|.+++.
T Consensus 1 i~i~~vY~pp~~--------~~~~~~~~l~~~~~~~--~~~~~Ii~GDFN~~~~~w~~~~------~~~~~~~~l~~~~~ 64 (119)
T PF14529_consen 1 ITIISVYAPPSS--------EREEFFDQLRQLLKNL--PPAPIIIGGDFNAHHPNWDSSN------TNSRRGEQLLDWLD 64 (119)
T ss_dssp EEEEEEE--TTS---------CHHHHHHHHHHHHCC--TTSSEEEEEE-----GGGT-SC------HHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCc--------cHHHHHHHHHHHHHhC--CCCCEEEEeECCCCchhhhhcc------ccchhHHHHHHHhh
Confidence 579999999976 2345666666655542 1129999999999766654321 11 22345667777
Q ss_pred HcCCcceecccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCc
Q 006804 219 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 267 (630)
Q Consensus 219 ~~g~~l~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll 267 (630)
+.+ |.++ ++... .|||++... ++|||+||++..+.
T Consensus 65 ~~~--l~~~----~~~~~-~~T~~~~~~-------~s~iD~~~~s~~~~ 99 (119)
T PF14529_consen 65 SHN--LVDL----NPPGR-PPTFISNSH-------GSRIDLILTSDNLL 99 (119)
T ss_dssp HCT--EEE-------TT----SEEECCC-------EE--EEEEEECCGC
T ss_pred hce--eeee----ecCCC-CCcccCCCC-------CceEEEEEECChHH
Confidence 665 7777 33223 389988754 68999999999864
No 20
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.27 E-value=2.2e-11 Score=125.86 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=81.6
Q ss_pred EEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEee
Q 006804 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRV 81 (630)
Q Consensus 2 rIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR~ 81 (630)
++++.|++.-+....+ +...+...++|+|.+||+..-..... ......|.+|..+. ++ .+--|+++++|.
T Consensus 90 ~~l~~N~r~~n~~~~k---~Lsl~~~~~~D~v~~~E~~~~~~~~~--~~l~~~yP~~~~~~----~~-~~~~~~a~~sr~ 159 (309)
T COG3021 90 WNLQKNVRFDNASVAK---LLSLIQQLDADAVTTPEGVQLWTAKV--GALAAQYPAFILCQ----HP-TGVFTLAILSRR 159 (309)
T ss_pred hhhhhhccccCcCHHH---HHHHHhhhCcchhhhHHHHHHhHhHH--HHHHHhCCceeecC----CC-CCeeeeeecccc
Confidence 5667777666555554 78888888899999999953222221 14566777666554 22 255588999887
Q ss_pred cCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEE----ecceEEEEEEecCCCCCCchHH
Q 006804 82 KSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVIT----DHGHFILFNVYGPRADSEDTVR 157 (630)
Q Consensus 82 ~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv----~~~~~~LinVY~P~~~~~~~~r 157 (630)
+ ++|.. ++-+. .....++.+.. +...++|+++|.-+.....
T Consensus 160 ~--------~~~~~--~~e~~----------------------~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~--- 204 (309)
T COG3021 160 P--------CCPLT--EAEPW----------------------LRLPKSALATAYPLPDGTELTVVALHAVNFPVGT--- 204 (309)
T ss_pred c--------ccccc--ccCcc----------------------ccCCccceeEEEEcCCCCEEEEEeeccccccCCc---
Confidence 3 12221 11111 11123333322 2346888888876433221
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCC
Q 006804 158 IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPA 193 (630)
Q Consensus 158 ~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~ 193 (630)
..++ ..+..|.+ .+..-..+||++||||+.+-
T Consensus 205 ~~~~-~ql~~l~~---~i~~~~gpvIlaGDfNa~pW 236 (309)
T COG3021 205 DPQR-AQLLELGD---QIAGHSGPVILAGDFNAPPW 236 (309)
T ss_pred cHHH-HHHHHHHH---HHHcCCCCeEEeecCCCcch
Confidence 2233 33333333 33345699999999998653
No 21
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.11 E-value=2.4e-09 Score=111.18 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=43.8
Q ss_pred CEEEEeccccccccch----hhhHHHHHHhhcCCcEEEEeccccccc-cchhHHH------hhcCCcEEEeecccCCCCC
Q 006804 1 MKIVTYNVNGLRQRVS----QFGSLRKLLDSFDADIICFQETKLRRQ-ELKSDLV------MADGYESFFSCTRTSDKGR 69 (630)
Q Consensus 1 mrIlSwNInGlr~~~~----r~~~l~~~L~~l~aDIIcLQETk~~~~-~l~~~l~------~~~GY~~~fs~~~~~~~gr 69 (630)
|||+||||+.+..... +...|.++|. ++|||++||+.-... .+. .++ ...+|..+.+.. .|+
T Consensus 18 l~I~SfNIr~fgd~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~-~ll~~Ln~~~~~~Y~~v~s~r----~gr 90 (276)
T smart00476 18 LRICAFNIQSFGDSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVP-KLMDQLNSDSPNTYSYVSSEP----LGR 90 (276)
T ss_pred EEEEEEECcccCCccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHH-HHHHHHhhcCCCCceEEecCC----CCC
Confidence 6999999985432211 1234566666 889999999964322 221 111 113787766543 233
Q ss_pred Ccc-eeEEEEEeec
Q 006804 70 TGY-SGVATFCRVK 82 (630)
Q Consensus 70 ~Gy-sGVAIlsR~~ 82 (630)
.+| .-.|+++|..
T Consensus 91 ~~~~E~~a~~Yr~d 104 (276)
T smart00476 91 NSYKEQYLFLYRSD 104 (276)
T ss_pred CCCCEEEEEEEecc
Confidence 332 3478888873
No 22
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.07 E-value=1.1e-09 Score=114.25 Aligned_cols=81 Identities=27% Similarity=0.368 Sum_probs=53.1
Q ss_pred CEEEEecccc---ccc-----------cchhhhHHHHHHhhcCCcEEEEecccccc-ccchhHHHhhcCCcEEEeecccC
Q 006804 1 MKIVTYNVNG---LRQ-----------RVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRTS 65 (630)
Q Consensus 1 mrIlSwNInG---lr~-----------~~~r~~~l~~~L~~l~aDIIcLQETk~~~-~~l~~~l~~~~GY~~~fs~~~~~ 65 (630)
++|||||+-. ++. .-.|++.|++.|..++||||||||+.... +.+..+.+-..||+..|.....+
T Consensus 31 ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~k 110 (378)
T COG5239 31 FTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKERK 110 (378)
T ss_pred eEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCCCc
Confidence 4799999832 111 11233578999999999999999996542 34555667788999977643221
Q ss_pred CC-----CCCcceeEEEEEee
Q 006804 66 DK-----GRTGYSGVATFCRV 81 (630)
Q Consensus 66 ~~-----gr~GysGVAIlsR~ 81 (630)
.+ ....--|++|+.+.
T Consensus 111 ~~~m~~~d~t~~dGc~if~k~ 131 (378)
T COG5239 111 VKWMIDYDTTKVDGCAIFLKR 131 (378)
T ss_pred ccccccccccccceEEEEEEe
Confidence 00 00123499999987
No 23
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.92 E-value=9.6e-09 Score=108.86 Aligned_cols=157 Identities=19% Similarity=0.188 Sum_probs=81.3
Q ss_pred EEEEeccccccccchhhhHHHHHHhh-------cCCcE--EEEecc-cccccc-----------chhHHHhh----cCCc
Q 006804 2 KIVTYNVNGLRQRVSQFGSLRKLLDS-------FDADI--ICFQET-KLRRQE-----------LKSDLVMA----DGYE 56 (630)
Q Consensus 2 rIlSwNInGlr~~~~r~~~l~~~L~~-------l~aDI--IcLQET-k~~~~~-----------l~~~l~~~----~GY~ 56 (630)
-|+||||+|....... .+..+|.. ..+|| |+|||+ .+.... ....+... ..|.
T Consensus 6 ~v~TwNv~~~~~~p~~--~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~Y~ 83 (310)
T smart00128 6 LVGTWNVGGLKADPKV--DVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQYN 83 (310)
T ss_pred EEEEEECCCccCCChh--hHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCceE
Confidence 5789999997522222 36667654 67999 669998 221110 00011111 3344
Q ss_pred EEEeecccCCCCCCcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEe
Q 006804 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD 136 (630)
Q Consensus 57 ~~fs~~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~ 136 (630)
...+.. .+..++.||+|.........+ ....+..|+.|. .....|.++.+.
T Consensus 84 ~v~~~~-------l~gi~l~vf~~~~~~~~i~~v-~~~~v~~G~~~~---------------------~~nKG~v~i~~~ 134 (310)
T smart00128 84 VLAKVR-------LVGILVLVFVKANHLVYIKDV-ETFTVKTGMGGL---------------------WGNKGAVAVRFK 134 (310)
T ss_pred EEeeee-------ecceEEEEEEehhhcCcccee-Eeeeeeccccce---------------------eecCceEEEEEE
Confidence 433321 343578888887532111100 000111222111 234566776666
Q ss_pred cc--eEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHH----H--HhcCCeEEEeCCCCCCCC
Q 006804 137 HG--HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF----L--LCQGRRIFVVGDLNIAPA 193 (630)
Q Consensus 137 ~~--~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~----l--~~~g~pVII~GDFN~~~~ 193 (630)
.. .|.++|.|++++... ...|..-+..+...+.- . +....++|++||||-..+
T Consensus 135 ~~~~~~~fv~~HL~a~~~~----~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 135 LSDTSFCFVNSHLAAGASN----VEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred EcCcEEEEEeeccccccch----hhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 53 599999999986542 33344444444322210 0 123578999999997544
No 24
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=98.90 E-value=3.4e-09 Score=113.76 Aligned_cols=68 Identities=26% Similarity=0.363 Sum_probs=43.3
Q ss_pred hHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccC-CCCCCcceeEEEEEeecCCCCCc
Q 006804 19 GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTS-DKGRTGYSGVATFCRVKSPFSST 88 (630)
Q Consensus 19 ~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~-~~gr~GysGVAIlsR~~~~f~~~ 88 (630)
..+.+.|...+||||||||+ .....+....+...||.+.|..-... ....+.-.|+|||.|. ..|++.
T Consensus 53 ~~~~~ei~~~~ad~icLqev-~~~~~~~~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~-s~f~li 121 (361)
T KOG0620|consen 53 QLLLEEILNYNADILCLQEV-DRYHDFFSPELEASGYSGIFIEKTRMGEVELEKIDGCAIFFKP-SLFQLI 121 (361)
T ss_pred HHHHHHHhCCCcceeecchh-hHHHHHccchhhhcCCcceeecccccchhhcccCceeeeeecc-hHHhhh
Confidence 45888888999999999999 33333333345566999988641000 0012334699999987 345543
No 25
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.00038 Score=80.73 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=27.5
Q ss_pred ceEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHH----HHhcCCeEEEeCCCCCC
Q 006804 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEF----LLCQGRRIFVVGDLNIA 191 (630)
Q Consensus 138 ~~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~----l~~~g~pVII~GDFN~~ 191 (630)
..|.+++-|+.++.. ....|..-|..+..-+.- .+.....|++|||||-.
T Consensus 673 TsfCFv~SHlAAG~s----nv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYR 726 (1080)
T KOG0566|consen 673 TSFCFVCSHLAAGQS----NVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYR 726 (1080)
T ss_pred ccEEEEecccccccc----hHhhhhhhHHHHHHhccccCCccccCCceEEEeccccee
Confidence 357788888876543 233333334333332221 01233579999999953
No 26
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=97.61 E-value=0.00054 Score=78.23 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHH--hcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceecccccCCCCCC
Q 006804 160 FKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 237 (630)
Q Consensus 160 ~k~~fl~~L~~~i~~l~--~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~~~ 237 (630)
.|.+..++|..++..+. ....+++|+||||.-.. + ++ + ..|...| +...--.+|+...+
T Consensus 653 ~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~-----------e-dp----I-~~l~~aG--y~~l~~~~~~~~~~ 713 (798)
T COG2374 653 TRVRAAQALAAFLATNPTGKADADIVILGDFNDYAF-----------E-DP----I-QALEGAG--YMNLAARFHDAGDR 713 (798)
T ss_pred HHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhh-----------c-cH----H-HHHhhcC--chhhhhhccCCCCc
Confidence 45556666777766431 23578999999995221 1 11 1 1233333 44443344444332
Q ss_pred ccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeeccc-------ccCCCCCCCCcCCCCCCC
Q 006804 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY-------KRWKPGNAPRWKGGMSTR 310 (630)
Q Consensus 238 ~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~-------~~~~~~~~~~w~~g~~~~ 310 (630)
|+ +.+.. +.-.|||||++..+.+++.. ..+..|-.+. .+++--++.-++. ...
T Consensus 714 -YS---Y~f~G----~~gtLDhaLas~sl~~~v~~----------a~ewHINAdE~~~ldYn~~Fk~q~~~~~~~--~~~ 773 (798)
T COG2374 714 -YS---YVFNG----QSGTLDHALASASLAAQVSG----------ATEWHINADEPDALDYNLEFKGQNVSLYKT--TNP 773 (798)
T ss_pred -eE---EEECC----ccchHhhhhhhhhhhhhccC----------ceeeeecccccchhhhhhhhcccccccccc--CCc
Confidence 44 33332 13459999999988764331 1222222110 0111001111111 123
Q ss_pred CCCCCccceEEEEeecC
Q 006804 311 LEGSDHAPVYMCLGEVP 327 (630)
Q Consensus 311 ~~~SDH~PV~~~L~~~~ 327 (630)
+..|||=||++.|++.-
T Consensus 774 fR~SDHDPvvvglnL~~ 790 (798)
T COG2374 774 FRASDHDPVVVGLNLLG 790 (798)
T ss_pred cccCCCCCeEEEEEecc
Confidence 56799999999998764
No 27
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair]
Probab=97.39 E-value=5.9e-05 Score=83.98 Aligned_cols=40 Identities=30% Similarity=0.752 Sum_probs=34.9
Q ss_pred CCCCCCCCCceeeEecCCCCCCCeeeeeccCCCCCCCCCCCCCCceeec
Q 006804 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623 (630)
Q Consensus 575 p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~ 623 (630)
..|. |+..++.+.|.|.|+|.||.||.|..+ +.|+||+|+
T Consensus 719 ~~c~-c~~ra~~l~v~k~~~nrGR~f~sc~~~--------k~c~ff~w~ 758 (758)
T KOG1956|consen 719 VTCG-CGTRAVKLLVAKTEPNRGRKFYSCLPE--------KSCNFFAWE 758 (758)
T ss_pred cccC-CcchhhhhhhhccCccCCCCCcccCCC--------CCcceEeeC
Confidence 4788 999888888999999999999999752 559999996
No 28
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=96.84 E-value=0.00069 Score=68.05 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCCceeeEecCCCCCCCeeeeeccCCCCCCCCCCCCCCceeeccCCCCC
Q 006804 572 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQ 629 (630)
Q Consensus 572 ~~~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~~~~~ 629 (630)
.++|+|+ ||. |.+. ||+.|+.--|+||+|+.-+ +...-|+||+|.++...+
T Consensus 11 ~~~P~C~-HGP-~LLF-~K~~~~E~~~~F~ACs~~R----~d~kfC~F~~~~d~~~~g 61 (325)
T KOG4399|consen 11 VPAPLCP-HGP-TLLF-VKVTQKEETRRFYACSACR----MDDKFCHFFMFEDEFFDG 61 (325)
T ss_pred CCCCcCC-CCC-eEEE-EEccCcchheeeehhhhhh----cchhccchhhhcccccCc
Confidence 5789999 984 5544 7888999999999998621 235689999999986543
No 29
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=95.86 E-value=0.15 Score=58.07 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.4
Q ss_pred CCCCCccceEEEEeecC
Q 006804 311 LEGSDHAPVYMCLGEVP 327 (630)
Q Consensus 311 ~~~SDH~PV~~~L~~~~ 327 (630)
+..|||.||++.|.+..
T Consensus 577 i~~SDHRPV~A~F~v~V 593 (621)
T PLN03191 577 IRLSDHRPVSSMFLVEV 593 (621)
T ss_pred cccCCchhcceEEEEEE
Confidence 57899999999998754
No 30
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=84.22 E-value=1.7 Score=47.78 Aligned_cols=17 Identities=41% Similarity=0.473 Sum_probs=14.0
Q ss_pred CCCCCccceEEEEeecC
Q 006804 311 LEGSDHAPVYMCLGEVP 327 (630)
Q Consensus 311 ~~~SDH~PV~~~L~~~~ 327 (630)
++.|||.||++.+....
T Consensus 312 l~~SDHrPV~a~~~~~i 328 (460)
T COG5411 312 LMISDHRPVYATFRAKI 328 (460)
T ss_pred eeecCCCeEEEEEecce
Confidence 47899999999998543
No 31
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=81.76 E-value=2.5 Score=30.75 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=27.0
Q ss_pred CCCCCCCCceeeEecCCCCCCCeeeeeccCCCCCCCCCCCCCCceeeccC
Q 006804 576 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFS 625 (630)
Q Consensus 576 ~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~ 625 (630)
.|+.||.+-+.+..++ | .||.|+. --.|.|..|..+
T Consensus 3 ~CP~Cg~~lv~r~~k~-g-----~F~~Cs~--------yP~C~~~~~~~~ 38 (39)
T PF01396_consen 3 KCPKCGGPLVLRRGKK-G-----KFLGCSN--------YPECKYTEPLPK 38 (39)
T ss_pred CCCCCCceeEEEECCC-C-----CEEECCC--------CCCcCCeEeCCC
Confidence 5888887777776654 3 9999986 126999999764
No 32
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=77.66 E-value=5.9 Score=41.58 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=35.7
Q ss_pred ceEEEEEEecCCCCCCchHH-------HHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCC
Q 006804 138 GHFILFNVYGPRADSEDTVR-------IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPA 193 (630)
Q Consensus 138 ~~~~LinVY~P~~~~~~~~r-------~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~ 193 (630)
..|.++|+|+-+....-..+ ..+|.+-|.........+.....++++.||||--.+
T Consensus 80 t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld 142 (356)
T PTZ00312 80 VVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLD 142 (356)
T ss_pred EEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeec
Confidence 46899999997765421111 223444444444445555566789999999997654
No 33
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=72.77 E-value=1.7 Score=35.53 Aligned_cols=44 Identities=32% Similarity=0.868 Sum_probs=16.9
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCCceeeEecCCCCCCCeeeeeccCCCCCCCCCCCCCCcee
Q 006804 560 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 621 (630)
Q Consensus 560 ~~~w~~~~~~~~~~~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~ 621 (630)
...|.+= ...+|.|. -||.|.+| | |+-.||. |-=|+| ..||||+
T Consensus 26 ~p~~EKK----~g~vP~Cd-~GE~CAvr---k-G~RIGkl---CdC~rG------~~CN~fl 69 (73)
T PF06373_consen 26 IPSWEKK----YGQVPSCD-VGEQCAVR---K-GPRIGKL---CDCPRG------TSCNFFL 69 (73)
T ss_dssp ----------------B---SSS-SEEE-----SSSEEE-----B--TT--------B-TTT
T ss_pred CChhhhh----cCcCCCCC-CCchhhhc---c-ccccccc---cCCCCC------CchhhhH
Confidence 3457652 23589999 99999765 4 8888884 444444 7899996
No 34
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=59.18 E-value=6.8 Score=45.11 Aligned_cols=36 Identities=33% Similarity=0.406 Sum_probs=25.1
Q ss_pred EEEEeccccccccchhhhHHHHHHhhcCC-c--EEEEeccc
Q 006804 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDA-D--IICFQETK 39 (630)
Q Consensus 2 rIlSwNInGlr~~~~r~~~l~~~L~~l~a-D--IIcLQETk 39 (630)
-|.||||+|-..+... .|..+|...++ | ||.|||+-
T Consensus 111 ~v~TWNV~g~~p~~~l--~l~~wl~~~~p~DiyviG~QE~v 149 (621)
T PLN03191 111 TIGTWNVAGRLPSEDL--EIEDWLSTEEPADIYIIGFQEVV 149 (621)
T ss_pred EEEEeecCCCCCcccC--CHHHhccCCCCCCEEEEeeEEec
Confidence 3689999997654332 37777776655 7 46679983
No 35
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=57.89 E-value=11 Score=28.38 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=27.4
Q ss_pred CCCCCCCCceeeEecCCCCCCCeeeeeccC
Q 006804 576 LCKGHKEPCVARVVKKPGPTFGRRFFVCAR 605 (630)
Q Consensus 576 ~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~ 605 (630)
.|+-||.+++.|+..+.-+..-+.+|.|..
T Consensus 1 ~CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N 30 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQLSPLTRELYCQCTN 30 (47)
T ss_pred CcCCCCCeeEEEEchhhCcceEEEEEEECC
Confidence 488899999999999999999999999975
No 36
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=48.16 E-value=6.5 Score=43.33 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=7.7
Q ss_pred cccCccccccccccC
Q 006804 462 SQLGQLSLKSFFHKR 476 (630)
Q Consensus 462 ~~~~q~~l~~fF~~~ 476 (630)
...+|+||||||+++
T Consensus 416 ~k~kQ~simsFF~KK 430 (430)
T PF09507_consen 416 KKKKQGSIMSFFKKK 430 (430)
T ss_dssp ---EE--GGGTSB--
T ss_pred CCCCCcchhhhccCC
Confidence 456899999999863
No 37
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=41.30 E-value=38 Score=29.58 Aligned_cols=46 Identities=22% Similarity=0.506 Sum_probs=32.2
Q ss_pred CCCCCCCCCCceeeEecCCCCCCCeeeeeccCCCCCCCCCCCCCCceeec
Q 006804 574 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 623 (630)
Q Consensus 574 ~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~ 623 (630)
+.-|. |+..-+..|. ..-...|..||.|+- --+..+..+|+|-.|-
T Consensus 20 ~ie~d-cnakvvvats-~dpvts~klyfscpy--eisdg~g~~~gfkrww 65 (122)
T PF05325_consen 20 PIECD-CNAKVVVATS-RDPVTSGKLYFSCPY--EISDGPGRGCGFKRWW 65 (122)
T ss_pred ceecc-CCceEEEEec-cCCcccceeeecCcc--ccccCCCCCccceeEE
Confidence 44688 8877665554 556788999999976 2222345799999984
No 38
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=26.34 E-value=51 Score=34.65 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=17.6
Q ss_pred CCCCCCCCCceeeEecCCCCCCCeeeeeccC
Q 006804 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 605 (630)
Q Consensus 575 p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~ 605 (630)
..|+.||.+-++-.+...+. .|++|..|+.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~-~G~R~L~Cs~ 202 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGER-EGKRYLHCSL 202 (290)
T ss_dssp SS-TTT---EEEEEEE-------EEEEEETT
T ss_pred CcCCCCCCcCceEEEecCCC-CccEEEEcCC
Confidence 58999999988888888777 8999999975
No 39
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=23.64 E-value=39 Score=38.20 Aligned_cols=32 Identities=28% Similarity=0.590 Sum_probs=23.2
Q ss_pred CCCCCCCCCCcee-----eEecCCCCCCCeeeeeccC
Q 006804 574 IPLCKGHKEPCVA-----RVVKKPGPTFGRRFFVCAR 605 (630)
Q Consensus 574 ~p~C~~~~~~~~~-----~~v~k~g~n~Gr~f~~C~~ 605 (630)
+++|..|+.||+. ......-.-.||.+|.|+.
T Consensus 380 p~~c~vC~~p~~~~~~~~~~~~~~~ey~G~~y~FCS~ 416 (465)
T cd01057 380 PPLCNVCQVPCVFTEDLTAEAPRVLEYNGRKYHFCSE 416 (465)
T ss_pred CCCCCCCCCeeccccCcccccceEEEECCEEEEecCH
Confidence 5699999999882 2222334467999999974
No 40
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=22.82 E-value=1e+02 Score=25.77 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCCCCCCCCceeeEecCCCCCCCeeeeeccC
Q 006804 575 PLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 605 (630)
Q Consensus 575 p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~ 605 (630)
-.|+-||.+++.|+.....+..=|++|.|..
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~~~~~Y~qC~N 32 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDTTKERYHQCQN 32 (72)
T ss_pred ccCCCCCCccEEEEChhcChhhheeeeecCC
Confidence 3688899999999998888889999999974
Done!