Query 006804
Match_columns 630
No_of_seqs 373 out of 2132
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 1.6E-41 5.3E-46 345.8 25.6 251 1-327 4-259 (265)
2 2j63_A AP-endonuclease; base e 100.0 4E-40 1.4E-44 363.4 25.6 275 1-325 150-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 2.3E-36 7.9E-41 304.5 24.5 249 1-324 2-256 (257)
4 2jc5_A Exodeoxyribonuclease; h 100.0 3.4E-36 1.2E-40 302.8 22.1 251 1-326 2-257 (259)
5 2jc4_A Exodeoxyribonuclease II 100.0 1.4E-35 4.8E-40 297.8 23.9 250 1-324 1-255 (256)
6 1hd7_A DNA-(apurinic or apyrim 100.0 6.8E-36 2.3E-40 313.6 22.1 249 1-324 62-317 (318)
7 2o3h_A DNA-(apurinic or apyrim 100.0 1.9E-35 6.4E-40 303.4 23.3 249 1-324 29-284 (285)
8 1ako_A Exonuclease III; AP-end 100.0 8E-35 2.7E-39 294.3 22.3 251 1-324 1-267 (268)
9 1vyb_A ORF2 contains A reverse 100.0 3.2E-33 1.1E-37 277.1 21.9 227 1-324 8-238 (238)
10 2ei9_A Non-LTR retrotransposon 100.0 2.3E-30 7.9E-35 262.0 16.3 212 1-327 8-221 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 100.0 3.8E-28 1.3E-32 244.2 20.1 221 1-325 20-243 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 100.0 4.9E-27 1.7E-31 251.6 23.3 231 1-324 120-361 (362)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.9 1.6E-25 5.4E-30 223.1 24.0 231 1-324 14-255 (256)
14 3teb_A Endonuclease/exonucleas 99.9 1.6E-24 5.6E-29 218.3 18.0 240 1-325 4-266 (266)
15 3l1w_A Uncharacterized protein 99.9 1.2E-23 4.1E-28 212.0 23.4 240 1-327 1-253 (257)
16 4f1h_A Tyrosyl-DNA phosphodies 99.9 1.2E-23 4.1E-28 206.2 20.8 237 1-324 4-249 (250)
17 4gz1_A Tyrosyl-DNA phosphodies 99.9 6.3E-24 2.2E-28 211.2 18.3 236 1-326 10-255 (256)
18 3g6s_A Putative endonuclease/e 99.9 9E-23 3.1E-27 206.9 22.7 245 1-327 4-262 (267)
19 1zwx_A SMCL, sphingomyelinase- 99.9 8E-22 2.7E-26 203.2 19.2 212 1-266 11-256 (301)
20 3mpr_A Putative endonuclease/e 99.9 9.9E-21 3.4E-25 196.1 21.4 259 1-327 7-291 (298)
21 2ddr_A Sphingomyelin phosphodi 99.8 1.8E-20 6.2E-25 193.2 19.5 216 1-266 10-261 (306)
22 3i41_A Beta-hemolysin; beta to 99.8 4.1E-19 1.4E-23 186.2 20.0 211 1-267 30-275 (317)
23 3ngq_A CCR4-NOT transcription 99.8 3.2E-18 1.1E-22 185.0 18.6 177 1-194 32-260 (398)
24 4b8c_D Glucose-repressible alc 99.7 1.7E-17 5.9E-22 192.7 3.4 81 1-81 395-495 (727)
25 2a40_B Deoxyribonuclease-1; WA 99.6 1.5E-14 5.2E-19 146.5 14.9 158 1-193 1-174 (260)
26 2f1n_A CDT B, cytolethal diste 99.5 3.4E-14 1.2E-18 142.9 13.4 150 1-194 16-192 (262)
27 1sr4_B CDT B, cytolethal diste 99.5 2.9E-13 9.8E-18 137.4 17.9 40 1-40 5-47 (261)
28 1i9z_A Synaptojanin, phosphati 99.3 1.9E-11 6.5E-16 129.7 18.3 34 1-38 27-65 (347)
29 2imq_X Salivary nitrophorin; f 99.3 5.3E-12 1.8E-16 130.3 11.7 37 1-41 9-50 (282)
30 2xsw_A 72 kDa inositol polypho 99.3 1.9E-10 6.6E-15 122.4 19.7 74 1-82 28-107 (357)
31 3mtc_A Type II inositol-1,4,5- 98.9 3.3E-08 1.1E-12 102.9 17.8 37 1-41 10-50 (313)
32 4a9c_A Phosphatidylinositol-3, 98.7 5.5E-07 1.9E-11 93.9 17.2 70 2-82 11-101 (316)
33 1hy9_A Cocaine and amphetamine 82.4 0.82 2.8E-05 32.1 2.5 35 573-621 3-37 (41)
34 2zvk_U DNA polymerase ETA, pro 29.0 13 0.00044 23.4 0.2 13 464-476 7-19 (26)
35 2gai_A DNA topoisomerase I; zi 23.6 18 0.0006 40.9 0.2 23 595-625 589-611 (633)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=1.6e-41 Score=345.76 Aligned_cols=251 Identities=33% Similarity=0.591 Sum_probs=206.1
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||||++...++ .+.++|+.++|||||||||+.....+...+....||..++... +.+||.|||||+|
T Consensus 4 l~i~s~Nv~g~~~~~~~--~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~-----~~~~~~Gvail~k 76 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRK--GFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPA-----ERKGYSGVAMYTK 76 (265)
T ss_dssp EEEEEEECSCHHHHHHH--THHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECB-----SSTTSCCEEEEES
T ss_pred cEEEEEEcCCchhhhhh--hHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccC-----CCCCcCEEEEEEe
Confidence 69999999999987775 3999999999999999999988776654444468999887643 3467889999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~ 160 (630)
.+ +..+..++. ....|.+||++.+++..++|+|||+|+... ..+++.+
T Consensus 77 ~~----------~~~~~~~~~---------------------~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~-~~~~~~~ 124 (265)
T 3g91_A 77 VP----------PSSLREGFG---------------------VERFDTEGRIQIADFDDFLLYNIYFPNGAM-SEERLKY 124 (265)
T ss_dssp SC----------CSEEECCCS---------------------CHHHHSBSCEEEEECSSCEEEEEECCCCTT-CHHHHHH
T ss_pred cC----------hHHhccCCC---------------------CcccCCcCCEEEEEeCCEEEEEEEecCCCC-CchhHHH
Confidence 83 333333331 023578999999999999999999999885 5688999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCcceecccccCCCC
Q 006804 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (630)
Q Consensus 161 k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~ 235 (630)
|+.|++.|..+++.+...+.++||+||||+.+.++|..+.. .++...+ +.+|+.++ +.| |+|+||.+||..
T Consensus 125 r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~g--l~D~~r~~~p~~ 200 (265)
T 3g91_A 125 KLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVE-RAWIDKFI-ENG--YVDTFRMFNSDP 200 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHH-HHHHHHHH-HTT--EEETHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhcCCCCccCHHH-HHHHHHHH-hcC--cEEeeHhhCCCC
Confidence 99999999999998876789999999999999988876542 3455544 78899888 565 999999999997
Q ss_pred CCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCC
Q 006804 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315 (630)
Q Consensus 236 ~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SD 315 (630)
. .||||+.+.+++..|.|.||||||++..+.. .+.++.|.+. ..+||
T Consensus 201 ~-~yT~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~~~~~~i~~~-------------------~~~SD 247 (265)
T 3g91_A 201 G-QYTWWSYRTRARERNVGWRLDYFFVNEEFKG-------------KVKRSWILSD-------------------VMGSD 247 (265)
T ss_dssp C-CCSBCCSSTTTTTTTCCBCCEEEEEEGGGGG-------------GEEEEEECTT-------------------CCSSS
T ss_pred C-CCCCcCCCCCccccCceEEEEEEEECHHHHh-------------hhcEEEEeCC-------------------CCCCC
Confidence 6 6999999999988999999999999998644 6889999764 36899
Q ss_pred ccceEEEEeecC
Q 006804 316 HAPVYMCLGEVP 327 (630)
Q Consensus 316 H~PV~~~L~~~~ 327 (630)
|+||+++|....
T Consensus 248 H~Pv~~~~~~~~ 259 (265)
T 3g91_A 248 HCPIGLEIELLE 259 (265)
T ss_dssp BCCEEEEEECCC
T ss_pred cceEEEEhhhhh
Confidence 999999998543
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=4e-40 Score=363.43 Aligned_cols=275 Identities=26% Similarity=0.388 Sum_probs=199.2
Q ss_pred CEEEEeccccccccchhh-hHHHHHHhhcCCcEEEEeccccccccchhH--HHhhcCCcEEEeecccCCCCCCcceeEEE
Q 006804 1 MKIVTYNVNGLRQRVSQF-GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADGYESFFSCTRTSDKGRTGYSGVAT 77 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~-~~l~~~L~~l~aDIIcLQETk~~~~~l~~~--l~~~~GY~~~fs~~~~~~~gr~GysGVAI 77 (630)
|||+||||||++...++. ..|.++|..++|||||||||+...+.+... +....||+.||..+ .+..||+||||
T Consensus 150 LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~----~~~~g~~GVAI 225 (467)
T 2j63_A 150 YKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPC----AFKRGYSGTRT 225 (467)
T ss_dssp EEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECC----SSSTTSCCEEE
T ss_pred eEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecc----cCCCCcceEEE
Confidence 799999999998776542 359999999999999999999876655421 22357998777643 24568899999
Q ss_pred EEeecCCCCCcccccce--eeeecccccccccCcccccCcccccchhhcccCCCCcEEEEec----------ceEEEEEE
Q 006804 78 FCRVKSPFSSTEVALPV--AAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----------GHFILFNV 145 (630)
Q Consensus 78 lsR~~~~f~~~~~~~Pi--~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~----------~~~~LinV 145 (630)
|+|.++. ..++ ....++......+.....+.... .....|.+||+|.+++ ..|.|+|+
T Consensus 226 lsR~pi~------~~~l~~~~~~~~~~p~~~~~~~~~gs~~~----~~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinv 295 (467)
T 2j63_A 226 YMKNSTT------VKGLHARCTRGFALPSEPQADAAAGSRVL----VEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNT 295 (467)
T ss_dssp EEECCCC------CCTSCCEEEESSCCCCC-----------C----CCCCCCTTCCEEEEEECSSCCC----CCEEEEEE
T ss_pred EEeCCcc------ccccceeeeeccccccccccccccccccc----cccccCCCCcEEEEEEEeCCcccccCceEEEEEE
Confidence 9998531 0011 12234321100000000000000 0023578999998887 57999999
Q ss_pred ecCCCCCCchHHHHHHH-HHHHHHHHHHHHHHh------------------cCCeEEEeCCCCCCCCccccCCC------
Q 006804 146 YGPRADSEDTVRIQFKL-QFFHVLQKRWEFLLC------------------QGRRIFVVGDLNIAPAAIDRCDA------ 200 (630)
Q Consensus 146 Y~P~~~~~~~~r~~~k~-~fl~~L~~~i~~l~~------------------~g~pVII~GDFN~~~~~iD~~~~------ 200 (630)
|+|+.+. +.+++.+|+ .|++.|..+++.+.. .+.+||||||||+++..+|++++
T Consensus 296 YlP~~~~-~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~ 374 (467)
T 2j63_A 296 YVANSGM-GLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSM 374 (467)
T ss_dssp ECCCCCT-TSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHH
T ss_pred ECCCCCc-chHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhc
Confidence 9999864 356778887 466778888777642 35899999999999998888651
Q ss_pred --CCCCCchHHHHHHHHHHHHcCCcceecccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccc
Q 006804 201 --GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 278 (630)
Q Consensus 201 --~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~ 278 (630)
..+|...+ |.||..+|...+ |+|+||.+||...+.||||+++.+++..|.+.||||||++..+..
T Consensus 375 ~~~~gf~~~e-r~~~~~lL~~~g--L~DafR~~~p~~~~~yTw~s~r~~~~~~n~g~RIDyIlvS~~l~~---------- 441 (467)
T 2j63_A 375 QECSGFAPEE-RMSFRETMQRTN--SVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLAS---------- 441 (467)
T ss_dssp TTSTTSCHHH-HHHHHHHHHHTT--EEEHHHHHCTTBCSCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGG----------
T ss_pred ccccccCHHH-HHHHHHHHhhCC--CEEehHhhCCCCCCCccccCCCCCcccCCCCceeEEEEEcHHHHc----------
Confidence 24566655 889999887665 999999999976667999999999888899999999999987643
Q ss_pred cccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccceEEEEee
Q 006804 279 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325 (630)
Q Consensus 279 ~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SDH~PV~~~L~~ 325 (630)
.|.++.|+.. ..+||||||+++|..
T Consensus 442 ---~v~~~~I~~~-------------------~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 442 ---YVVDCFPMPT-------------------VMGSDHCPFQMWMRH 466 (467)
T ss_dssp ---GEEEEEECTT-------------------CCSSSBCCEEEEEEC
T ss_pred ---ceeEEEECCC-------------------CCCCCcccEEEEEEc
Confidence 6889999764 368999999999974
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.3e-36 Score=304.48 Aligned_cols=249 Identities=29% Similarity=0.400 Sum_probs=186.3
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||+|++.+.++ +.++|+.++|||||||||+.....+....+...||..++.. ..++.|||||+|
T Consensus 2 lrv~t~Nv~g~~~~~~~---i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 71 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHI---VIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG-------SKGRNGVAIASL 71 (257)
T ss_dssp EEEEEEECSCGGGTHHH---HHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE-------ETTEEEEEEEES
T ss_pred eEEEEEecCChHHHHHH---HHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEcC-------CCCccEEEEEEc
Confidence 69999999999877654 99999999999999999987655544333456799877652 246679999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~ 160 (630)
.++ .....++.+ ...| ++|++.++++.+.|+|+|+|+....+.++..+
T Consensus 72 ~~~----------~~~~~~~~~---------------------~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~~ 119 (257)
T 2voa_A 72 EEP----------EDVSFGLDS---------------------EPKD-EDRLIRAKIAGIDVINTYVPQGFKIDSEKYQY 119 (257)
T ss_dssp SCC----------EEEEESCSS---------------------SSCC-GGGEEEEEETTEEEEEEECCCCSCTTSHHHHH
T ss_pred cCh----------HHheecCCC---------------------Cccc-cCcEEEEEECCEEEEEEEeCCCCCCCcHHHHH
Confidence 831 112222210 0134 78998888889999999999976534467778
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCcceecccccCCCC
Q 006804 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (630)
Q Consensus 161 k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~ 235 (630)
|.+|++.|..+++.+...+.++||+||||+.+..+|.+... .++...+ +.+|..++ +.| |.|+||..+|..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~p~~ 195 (257)
T 2voa_A 120 KLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDA-RRAYKKIL-ELG--FVDVLRKIHPNE 195 (257)
T ss_dssp HHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHH-HHHHHHHH-TTT--CEEHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHhCCCCCCCHHH-HHHHHHHH-HcC--cEeeehhhCCCC
Confidence 88899988888877655678999999999998888765421 2344333 67888777 344 999999999985
Q ss_pred CCccccCCC-CCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCC
Q 006804 236 REAYTCWPS-NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314 (630)
Q Consensus 236 ~~~yT~ws~-~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~S 314 (630)
+.||||+. +.+++..+.+.||||||+++.+.. .+.++.|....+. ...+|
T Consensus 196 -~~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~---------------~~~~S 246 (257)
T 2voa_A 196 -RIYTFYDYRVKGAIERGLGWRGDAILATPPLAE-------------RCVDCYADIKPRL---------------AEKPS 246 (257)
T ss_dssp -CCCSBCCTTSTTTTTTTCCBCCEEEEECHHHHT-------------TEEEEEECCHHHH---------------SSSCC
T ss_pred -CCcceeccccCCceecCceEEEEEEEECHHHHh-------------hhheeEeehhhcc---------------CCCCC
Confidence 46999998 777766678999999999987532 4778888654211 02689
Q ss_pred CccceEEEEe
Q 006804 315 DHAPVYMCLG 324 (630)
Q Consensus 315 DH~PV~~~L~ 324 (630)
||+||+++|.
T Consensus 247 DH~pv~~~l~ 256 (257)
T 2voa_A 247 DHLPLVAVFD 256 (257)
T ss_dssp SBCCEEEEEC
T ss_pred CccCEEEEEe
Confidence 9999999986
No 4
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=3.4e-36 Score=302.84 Aligned_cols=251 Identities=29% Similarity=0.475 Sum_probs=191.6
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||+|++...++ .+.++|+.++|||||||||+.....+...++...||..++... +..++.|||||+|
T Consensus 2 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~-----~~~~~~G~ailsr 74 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKK--GFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCA-----EKRGYSGVAVYSK 74 (259)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECC-----SSTTCCCEEEEES
T ss_pred cEEEEEeeccHHHHHHh--HHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEecc-----CCCCcceEEEEEe
Confidence 69999999999876554 4999999999999999999877655544444567998877643 2345679999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~ 160 (630)
.++ .....++.. ...|.+||++.++++.+.|+|+|+|+... ..+|..+
T Consensus 75 ~~~----------~~~~~~~~~---------------------~~~~~~~r~~~~~~~~~~v~~~h~~~~~~-~~~r~~~ 122 (259)
T 2jc5_A 75 RKP----------DNVQIGMGI---------------------EEFDREGRFVRCDFGRLSVISLYLPSGSS-AEERQQV 122 (259)
T ss_dssp SCC----------SEEEESCSC---------------------HHHHTTCCEEEEEETTEEEEEEECCCCTT-CHHHHHH
T ss_pred cCc----------eeEEeCCCC---------------------CccCCCCeEEEEEcCCEEEEEEeccCCCC-CcHHHHH
Confidence 842 222222210 12356899999999999999999999875 3577888
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCcceecccccCCCC
Q 006804 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (630)
Q Consensus 161 k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~ 235 (630)
|+.|++.|.++++.+...+.++||+||||..+..+|..... .++...+ +.+|..++...| |.|+||..+|..
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--l~d~~~~~~~~~ 199 (259)
T 2jc5_A 123 KYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEE-REWIGKVIHKLG--WTDMWRTLYPDV 199 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCSTTCTTSTTSCHHH-HHHHHHHHHTTC--CEEHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHhccCC--cEEeeHhhCCCC
Confidence 88899999888887765689999999999998887765432 2333333 677888886555 999999999976
Q ss_pred CCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCC
Q 006804 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315 (630)
Q Consensus 236 ~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SD 315 (630)
.+ ||||+...+.+..+.+.||||||+++.+.. .+.++.|... ..+||
T Consensus 200 ~~-~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~-------------------~~~SD 246 (259)
T 2jc5_A 200 PG-YTWWSNRGQAYAKDVGWRIDYQMVTPELAA-------------KAVSAHVYKD-------------------EKFSD 246 (259)
T ss_dssp CC-CCEESCSSHHHHTTCEECCEEEEECHHHHT-------------TEEEEEECCS-------------------SCCSS
T ss_pred CC-ccEECCcCCCccCCCeeEEEEEEECHHHHh-------------HHhheeecCC-------------------CCCCC
Confidence 66 999998876665677899999999976532 4788888753 36899
Q ss_pred ccceEEEEeec
Q 006804 316 HAPVYMCLGEV 326 (630)
Q Consensus 316 H~PV~~~L~~~ 326 (630)
|+||+++|.+.
T Consensus 247 H~pv~~~l~~~ 257 (259)
T 2jc5_A 247 HAPLVVEYDYA 257 (259)
T ss_dssp BCCEEEEESCC
T ss_pred cccEEEEEecc
Confidence 99999999753
No 5
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=1.4e-35 Score=297.77 Aligned_cols=250 Identities=29% Similarity=0.449 Sum_probs=187.5
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||+|++.+.++ +.++|+.++|||||||||+.....+...++...||..++.. ..++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~~---i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 70 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLPQ---VQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSG-------QKTYNGVAIVSR 70 (256)
T ss_dssp CEEEEEECSCHHHHHHH---HHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEEC-------CSSSCCEEEEES
T ss_pred CEEEEEEcCCcHHHHHH---HHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECC-------CCcceEEEEEEC
Confidence 89999999999876553 99999999999999999987665443334456799877652 245679999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~ 160 (630)
.++ .....++.+ ...+.++|++.++++.+.|+|+|+|+....+.++..+
T Consensus 71 ~~~----------~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~ 119 (256)
T 2jc4_A 71 SVP----------QDVHFGLPA---------------------LPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKY 119 (256)
T ss_dssp SCC----------EEEEESCTT---------------------STTCCSCCEEEEEETTEEEEEEECCCCCSTTSHHHHH
T ss_pred CCh----------HHheecCCC---------------------CccCCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHHH
Confidence 831 112222210 0135688999888889999999999987544567778
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCC-----CCCCCchHHHHHHHHHHHHcCCcceecccccCCCC
Q 006804 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (630)
Q Consensus 161 k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~-----~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~ 235 (630)
|..+++.|.+.++.+...+.++||+||||..+...|.... ..++...+ +.+|+.++ ..| |.|+||..+|..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~~~~ 195 (256)
T 2jc4_A 120 KEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVE-RQWFQNLL-DLG--LTDSLRQVHPEG 195 (256)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHH-HHHHHHHH-TTT--CEEHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhHhCCCCCcCHHH-HHHHHHHH-hcC--cEEhhhhhCCCC
Confidence 8889999988888876678999999999998887775432 22344433 67787776 344 999999999985
Q ss_pred CCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCC
Q 006804 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315 (630)
Q Consensus 236 ~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SD 315 (630)
. .||||+...+.+..+.+.||||||+++.+.. .+.++.|....+. ...+||
T Consensus 196 ~-~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~---------------~~~~SD 246 (256)
T 2jc4_A 196 A-FYTWFDYRGAMFQRKLGLRIDHILVSPAMAA-------------ALKDVRVDLETRA---------------LERPSD 246 (256)
T ss_dssp C-CCCBCCTTTTHHHHTCCBCCEEEEECHHHHT-------------TEEEEEECHHHHT---------------SSSCCS
T ss_pred C-ceeeEcCCCCccccCcEEEEEEEEECHHHHh-------------heeEEEEEhhccc---------------CCCCCC
Confidence 3 5999998877666677899999999986532 4788888764211 136899
Q ss_pred ccceEEEEe
Q 006804 316 HAPVYMCLG 324 (630)
Q Consensus 316 H~PV~~~L~ 324 (630)
|+||+++|.
T Consensus 247 H~pv~~~l~ 255 (256)
T 2jc4_A 247 HAPVTAEFD 255 (256)
T ss_dssp BCCEEEEEC
T ss_pred cccEEEEec
Confidence 999999986
No 6
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=6.8e-36 Score=313.58 Aligned_cols=249 Identities=29% Similarity=0.478 Sum_probs=180.7
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCC-cEEEeecccCCCCCCcceeEEEEE
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~GysGVAIls 79 (630)
|||+||||+|++...++ .|.++|..++|||||||||+.....+...+....|| +.|+... ....|+.|||||+
T Consensus 62 lrv~t~Nv~g~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~----~~~~g~~Gvails 135 (318)
T 1hd7_A 62 LKICSWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP----SDKEGYSGVGLLS 135 (318)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC---------CCCEEEEE
T ss_pred eEEEEEecCcchhhhhh--hHHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEEEecC----CCCCccceEEEEE
Confidence 69999999999876554 399999999999999999987655444334446799 5666542 1235677999999
Q ss_pred eecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHH
Q 006804 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (630)
Q Consensus 80 R~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~ 159 (630)
|.+ ++.+..++. ....|.+||++.+++..|.|+|+|+|+... ..+++.
T Consensus 136 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~-~~~~~~ 183 (318)
T 1hd7_A 136 RQC----------PLKVSYGIG---------------------DEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE 183 (318)
T ss_dssp SSC----------CSEEEESCS---------------------CGGGSSSSCEEEEECSSCEEEEEECCCCCG-GGTTHH
T ss_pred cCC----------ceeEEecCC---------------------CcccCCCCcEEEEEcCCEEEEEEEcCCCCC-ccccHH
Confidence 983 233333321 012467899999999999999999998764 345677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCC-----CCCCCCchHHHHHH-HHHHHHcCCcceecccccCC
Q 006804 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHP 233 (630)
Q Consensus 160 ~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~-----~~~~~~~~~~r~~l-~~lL~~~g~~l~D~~R~~hP 233 (630)
+|..|+..|..+++.+... .++||+||||+.+..+|++. ...+|...+ +.+| ..++.. | |.|+||..+|
T Consensus 184 ~r~~~~~~l~~~l~~~~~~-~pvIl~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~ll~~-~--l~D~~r~~~p 258 (318)
T 1hd7_A 184 YRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYP 258 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcccC-CCEEEEeeCCCCChhhhccChhhcCCCCCcCHHH-HHHHHHHHhhC-C--CEEeehhhCC
Confidence 8889999888888876433 89999999999998888642 123455444 6788 777753 4 9999999999
Q ss_pred CCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCC
Q 006804 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 313 (630)
Q Consensus 234 ~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~ 313 (630)
...+.||||+...+++..+.+.||||||++..+.. .|.++.|... ..+
T Consensus 259 ~~~~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~v~~~~v~~~-------------------~~~ 306 (318)
T 1hd7_A 259 NTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK-------------------ALG 306 (318)
T ss_dssp TCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT-------------------CCS
T ss_pred CCCCCcceECCcCCCcccCCceEEEEEEECHHHHh-------------hhhheEeecc-------------------CCC
Confidence 86546999998877666678899999999987632 5788888753 357
Q ss_pred CCccceEEEEe
Q 006804 314 SDHAPVYMCLG 324 (630)
Q Consensus 314 SDH~PV~~~L~ 324 (630)
|||+||+++|.
T Consensus 307 SDH~Pv~~~l~ 317 (318)
T 1hd7_A 307 SDHCPITLYLA 317 (318)
T ss_dssp SSBCCEEEEEC
T ss_pred CCccCEEEEec
Confidence 99999999986
No 7
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=1.9e-35 Score=303.40 Aligned_cols=249 Identities=29% Similarity=0.474 Sum_probs=187.2
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCC-cEEEeecccCCCCCCcceeEEEEE
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~GysGVAIls 79 (630)
|||+||||+|++...++ .+.++|+.++|||||||||+.....+...+....|| ..++... ....|+.|||||+
T Consensus 29 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~----~~~~g~~Gvails 102 (285)
T 2o3h_A 29 LKIASWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP----SDKEGYSGVGLLS 102 (285)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECB----C--CCSCCEEEEE
T ss_pred eEEEEEecccChhhhhh--hHHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcEEEEecc----cCCcccceEEEEE
Confidence 69999999999876554 399999999999999999987655454334446789 5666542 1235667999999
Q ss_pred eecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHH
Q 006804 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (630)
Q Consensus 80 R~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~ 159 (630)
|.+ ++.+..++. ....+.++|++.++++.|.|+|+|+|+... ..++..
T Consensus 103 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~-~~~~~~ 150 (285)
T 2o3h_A 103 RQC----------PLKVSYGIG---------------------DEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE 150 (285)
T ss_dssp SSC----------CSEEEESCS---------------------CGGGSSBCCEEEEECSSCEEEEEECCCCCG-GGTTHH
T ss_pred ccC----------hHHeeeccC---------------------CcccCCCCcEEEEEeCCEEEEEEEcCCCCC-cchhHH
Confidence 983 233333221 012467899999999999999999998764 345677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCC-----CCCCchHHHHHH-HHHHHHcCCcceecccccCC
Q 006804 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHP 233 (630)
Q Consensus 160 ~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~-----~~~~~~~~r~~l-~~lL~~~g~~l~D~~R~~hP 233 (630)
+|..|++.|..+++.+. ...++||+||||+.+..+|.+... .++...+ +.+| ..++.. + |.|+||..+|
T Consensus 151 ~r~~~~~~l~~~l~~~~-~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~~l~~-~--l~D~~~~~~~ 225 (285)
T 2o3h_A 151 YRQRWDEAFRKFLKGLA-SRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYP 225 (285)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhc-cCCCEEEEEECCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHHhcC-C--CEEEEEecCC
Confidence 88899998888888764 358999999999998888864322 2344333 6788 888764 4 9999999999
Q ss_pred CCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCC
Q 006804 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 313 (630)
Q Consensus 234 ~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~ 313 (630)
...+.||||+...+.+..+.+.||||||+++.+.. .+.++.|... ..+
T Consensus 226 ~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~v~~~~v~~~-------------------~~~ 273 (285)
T 2o3h_A 226 NTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK-------------------ALG 273 (285)
T ss_dssp TCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT-------------------CCS
T ss_pred CCCCcEeEecCcCCccccCceeEEEEEEECHHHHh-------------hhhheEeecc-------------------CCC
Confidence 76545999998877666677899999999987532 5788888763 357
Q ss_pred CCccceEEEEe
Q 006804 314 SDHAPVYMCLG 324 (630)
Q Consensus 314 SDH~PV~~~L~ 324 (630)
|||+||+++|.
T Consensus 274 SDH~pv~~~l~ 284 (285)
T 2o3h_A 274 SDHCPITLYLA 284 (285)
T ss_dssp SSBCCEEEEEC
T ss_pred CCeecEEEEec
Confidence 99999999986
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=8e-35 Score=294.26 Aligned_cols=251 Identities=29% Similarity=0.515 Sum_probs=183.0
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||+|++.+.. .+.++|..++|||||||||+.....+...++...||..++... .++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~---~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~~-------~~~~G~ailsr 70 (268)
T 1ako_A 1 MKFVSFNINGLRARPH---QLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQ-------KGHYGVALLTK 70 (268)
T ss_dssp CEEEEEECSCGGGCHH---HHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEE-------TTEEEEEEEES
T ss_pred CEEEEEehhHHHHHHH---HHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEeCC-------CCcceEEEEEe
Confidence 8999999999987555 4999999999999999999876655443444557998877532 35679999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEec----ceEEEEEEecCCCCCCc-h
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSED-T 155 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~----~~~~LinVY~P~~~~~~-~ 155 (630)
.+ +.....++.+. ..+..++++.+.+ +.|.|+|+|+|+..... +
T Consensus 71 ~~----------~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 119 (268)
T 1ako_A 71 ET----------PIAVRRGFPGD---------------------DEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHP 119 (268)
T ss_dssp SC----------CSEEEESSTTC---------------------CHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCT
T ss_pred cC----------cceeeeCCCCc---------------------ccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccc
Confidence 84 22233222100 1134567776654 47999999999876422 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCC-----------CCCCCCchHHHHHHHHHHHHcCCcc
Q 006804 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----------AGPDFAKNEFRIWFRSMLVESGGSF 224 (630)
Q Consensus 156 ~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~-----------~~~~~~~~~~r~~l~~lL~~~g~~l 224 (630)
++...|..+++.|.+.++.+...+.++||+||||+.+...|... ...++.+.+ +.++..++ +.| |
T Consensus 120 ~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~l~-~~g--l 195 (268)
T 1ako_A 120 IKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWMDRLM-SWG--L 195 (268)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHH-HHHHHHHH-HTT--E
T ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHH-HHHHHHHh-cCC--C
Confidence 45667888898888888876556789999999999988877642 123444444 66776655 444 9
Q ss_pred eecccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcC
Q 006804 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 304 (630)
Q Consensus 225 ~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~ 304 (630)
.|+||..+|...+.||||+.+.+.++.+.+.||||||+++.+.. .+.++.|....+.
T Consensus 196 ~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~riD~il~s~~~~~-------------~~~~~~i~~~~~~---------- 252 (268)
T 1ako_A 196 VDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAE-------------CCVETGIDYEIRS---------- 252 (268)
T ss_dssp EEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHT-------------TEEEEEECHHHHT----------
T ss_pred EEeEhhhCCCCCCCeeEeCCcCCccccCceEEEEEEEeCHHHHH-------------HHHhceechhhcC----------
Confidence 99999999986667999999887776678899999999987532 4667888754211
Q ss_pred CCCCCCCCCCCccceEEEEe
Q 006804 305 GGMSTRLEGSDHAPVYMCLG 324 (630)
Q Consensus 305 ~g~~~~~~~SDH~PV~~~L~ 324 (630)
...+|||+||+++|.
T Consensus 253 -----~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 253 -----MEKPSDHAPVWATFR 267 (268)
T ss_dssp -----SSSCCSBCCEEEEEC
T ss_pred -----CCCCCCcccEEEEcc
Confidence 126799999999985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=3.2e-33 Score=277.12 Aligned_cols=227 Identities=23% Similarity=0.447 Sum_probs=162.6
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||+|++...++ ..+.++|+.++|||||||||+.....+.. +...||..+|... +..++.|||||+|
T Consensus 8 lri~t~Nv~g~~~~~~~-~~~~~~i~~~~~DIv~LQE~~~~~~~~~~--l~~~~y~~~~~~~-----~~~~~~Gvail~r 79 (238)
T 1vyb_A 8 ITILTLNINGLNSAIKR-HRLASWIKSQDPSVCCIQETHLTCRDTHR--LKIKGWRKIYQAN-----GKQKKAGVAILVS 79 (238)
T ss_dssp EEEEEEECSCCCSHHHH-HHHHHHHHHHCCSEEEEECCCCCTTSGGG--CCCTTCCEEEEEC-----CSSSSCCEEEEEC
T ss_pred ceEEEEecccCCchhhH-HHHHHHHHHcCCCEEEEecccCCCCCchh--HhhCCCCeEEEcc-----CCCCCceEEEEEe
Confidence 69999999999876643 35999999999999999999876554432 2346898755332 1123459999999
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEec----ceEEEEEEecCCCCCCchH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSEDTV 156 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~----~~~~LinVY~P~~~~~~~~ 156 (630)
.++ |+.... ...|.++|++.+++ ..+.|+|+|+|+... +
T Consensus 80 ~~~---------~~~~~~-------------------------~~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~---~ 122 (238)
T 1vyb_A 80 DKT---------DFKPTK-------------------------IKRDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P 122 (238)
T ss_dssp TTC---------CCEEEE-------------------------EEECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H
T ss_pred CCC---------Cccccc-------------------------eeEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc---H
Confidence 853 222111 01356788887754 579999999998652 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceecccccCCCCC
Q 006804 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236 (630)
Q Consensus 157 r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~~ 236 (630)
+|++.|...+..+ .+.++||+||||..+..+|... ..+.... +.+|..++...+ |.|+||..+|...
T Consensus 123 ------~~~~~l~~~l~~~--~~~~~Il~GDFN~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~--l~d~~~~~~~~~~ 189 (238)
T 1vyb_A 123 ------RFIKQVLSDLQRD--LDSHTLIMGDFNTPLSTLDRST--RQKVNKD-TQELNSALHQAD--LIDIYRTLHPKST 189 (238)
T ss_dssp ------HHHHHHHHHTTTT--CCTTEEEEEECSSCSSGGGBTT--CCCCCHH-HHHHHHHHHHTT--EEEHHHHHCTTCC
T ss_pred ------HHHHHHHHHHHhc--cCCCEEEEccCCCCCCccccCC--CCCCcHH-HHHHHHHHhhCC--CEEhhHhhCCCCC
Confidence 2344333333321 3689999999999888777653 2333333 677888887666 9999999999765
Q ss_pred CccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCc
Q 006804 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDH 316 (630)
Q Consensus 237 ~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SDH 316 (630)
+ ||||+.+.+. +.||||||+++.+.. .+.++.|.+. .+|||
T Consensus 190 ~-~T~~~~~~~~-----~~rID~i~~s~~~~~-------------~~~~~~v~~~--------------------~~SDH 230 (238)
T 1vyb_A 190 E-YTFFSAPHHT-----YSKIDHIVGSKALLS-------------KCKRTEIITN--------------------YLSDH 230 (238)
T ss_dssp C-CSEEETTTTE-----EECCEEEEEEGGGGG-------------GEEEEEEECC--------------------SSSSS
T ss_pred c-eeEEcCCCCc-----ccceEEEEeCHHHHh-------------hhhhceeecC--------------------CCCCc
Confidence 4 9999876543 679999999987632 5788888753 68999
Q ss_pred cceEEEEe
Q 006804 317 APVYMCLG 324 (630)
Q Consensus 317 ~PV~~~L~ 324 (630)
+||+++|+
T Consensus 231 ~pv~~~l~ 238 (238)
T 1vyb_A 231 SAIKLELR 238 (238)
T ss_dssp CEEEEEEC
T ss_pred ccEEEEeC
Confidence 99999984
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.97 E-value=2.3e-30 Score=262.04 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=143.5
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||||++.+.++ +.++|.+.+|||||||||+. ..||+ + .. . ++.||||+++
T Consensus 8 mki~s~Nvn~~r~~~~~---l~~~l~~~~~DIl~LQEt~~-----------~~gy~-~-~~-------~-~~~gvail~~ 63 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE---LPSIARDLGLDIVLVQEQYS-----------MVGFL-A-QC-------G-AHPKAGVYIR 63 (240)
T ss_dssp EEEEEEECTTCHHHHHT---HHHHHHHHTCSEEEEESCCT-----------TSSSE-E-CC-------S-SSCSEEEEES
T ss_pred ceEEEEecCccHHHHHH---HHHHHHHcCCCEEEeecceE-----------cCCce-E-ec-------c-CCCCEEEEEe
Confidence 69999999999987765 99999999999999999972 13787 3 21 1 2459999998
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecceEEEEEEecCCCCCCchHHHHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~~r~~~ 160 (630)
.+. .|+....+ ..+.+++++.++++.++|+|+|+|+... ..+
T Consensus 64 ~~~--------~~~~~~~~-------------------------~~~~~~~~i~i~~~~i~i~svY~P~~~~-----~~~ 105 (240)
T 2ei9_A 64 NRV--------LPCAVLHH-------------------------LSSTHITVVHIGGWDLYMVSAYFQYSDP-----IDP 105 (240)
T ss_dssp STT--------SCEEECGG-------------------------GCCSSEEEEEETTTTEEEEEEECCTTSC-----SHH
T ss_pred cCC--------cceeeecc-------------------------cCCCCEEEEEEeeccEEEEEEEcCCCCc-----hhH
Confidence 731 23322111 1134667888888889999999999864 245
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceecccc--cCCCCCCc
Q 006804 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS--KHPERREA 238 (630)
Q Consensus 161 k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~--~hP~~~~~ 238 (630)
++.|++.|... ..+.++|||||||+++..++.......+.+.+ |.+....|. + |.|.+|. ++|... .
T Consensus 106 ~~~~l~~l~~~-----~~~~~~Ii~GDfN~~~~~w~~~~~~~~~~~~~-r~~~~~~l~--~--~~d~~~l~~~~~~~~-~ 174 (240)
T 2ei9_A 106 YLHRLGNILDR-----LRGARVVICADTNAHSPLWHSLPRHYVGRGQE-VADRRAKME--D--FIGARRLVVHNADGH-L 174 (240)
T ss_dssp HHHHHHHHHHH-----TTTSCEEEEEECCCCCGGGTCCHHHHSSSCHH-HHHHHHHHH--H--HHHHTTCEECCCTTC-C
T ss_pred HHHHHHHHHHh-----cCCCcEEEEEecccccccccCCCCCCCCcchh-hHHHHHHHH--H--HHHhcCCEecCCCCC-C
Confidence 66666655432 13579999999999875432110000233322 444444552 2 8889884 477533 5
Q ss_pred cccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccc
Q 006804 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 318 (630)
Q Consensus 239 yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SDH~P 318 (630)
||||+.+. ++||||||+++.+. . ..+.|.. ..+|||+|
T Consensus 175 ~T~~s~~~-------~~rID~~l~s~~l~--------------~-~~~~i~~--------------------~~~SDH~P 212 (240)
T 2ei9_A 175 PTFSTANG-------ESYVDVTLSTRGVR--------------V-SEWRVTN--------------------ESSSDHRL 212 (240)
T ss_dssp CSEEETTE-------EECCEEEEECTTCC--------------E-EEEEECS--------------------CCSSSBCC
T ss_pred ceEeCCCC-------ceEEEEEEecCccc--------------c-CCeEECC--------------------CCCCCccc
Confidence 99998642 68999999998752 1 4455542 26899999
Q ss_pred eEEEEeecC
Q 006804 319 VYMCLGEVP 327 (630)
Q Consensus 319 V~~~L~~~~ 327 (630)
|.++|....
T Consensus 213 v~~~l~~~~ 221 (240)
T 2ei9_A 213 IVFGVGGGT 221 (240)
T ss_dssp EEEEEEC--
T ss_pred EEEEECCCC
Confidence 999998654
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.96 E-value=3.8e-28 Score=244.23 Aligned_cols=221 Identities=15% Similarity=0.136 Sum_probs=140.0
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEEEe
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (630)
|||+||||||++..... +.++|...+|||||||||+........ ...||..++... ...++.|||||++
T Consensus 20 lri~s~Nv~~~~~~~~~---l~~~i~~~~~DIv~lQE~~~~~~~~~~---~~~gy~~~~~~~-----~~~~~~GvaIl~~ 88 (245)
T 1wdu_A 20 YRVLQANLQRKKLATAE---LAIEAATRKAAIALIQEPYVGGAKSMK---GFRGVRVFQSTA-----QGDGTVKAAIAVF 88 (245)
T ss_dssp EEEEEEECTTCHHHHHH---HHHHHHHHTCSEEEEESCCC------C---CCSSCEEEECCC-----CTTCCCCEEEEEC
T ss_pred eeeeeeeccccHHHHHH---HHHHHhhcCCCEEEEEcccccCCcccc---CCCcceEecccc-----ccCCCCCeEEEEE
Confidence 69999999999875553 999999999999999999876443321 245887665321 1234569999997
Q ss_pred ecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCc-EEEEe--cceEEEEEEecCCCCCCchHH
Q 006804 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITD--HGHFILFNVYGPRADSEDTVR 157 (630)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~--~~~~~LinVY~P~~~~~~~~r 157 (630)
.+ ++.... +. ..+.++. ++.+. .+.|.|+|+|+|+...
T Consensus 89 ~~----------~~~~~~-~~-----------------------~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~----- 129 (245)
T 1wdu_A 89 DH----------DLDVIQ-YP-----------------------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP----- 129 (245)
T ss_dssp CS----------SCEEEE-CT-----------------------TTCCSSEEEEEEECSSCEEEEEEEECCTTSC-----
T ss_pred CC----------CcceEE-ec-----------------------ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC-----
Confidence 52 221111 10 0112222 22333 3579999999998753
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceecccccCCCCCC
Q 006804 158 IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 237 (630)
Q Consensus 158 ~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP~~~~ 237 (630)
...|++.|...++.+ ...++||+||||+.+..++... .... +.+|..++...+ | +..+|. +
T Consensus 130 ---~~~~~~~l~~~~~~~--~~~~~Ii~GDfN~~~~~~~~~~-----~~~~-~~~l~~~~~~~~--l----~~~~~~--~ 190 (245)
T 1wdu_A 130 ---IESYLEQIKRVERKM--GPKRLIFGGDANAKSTWWGSKE-----DDAR-GDQLMGTLGELG--L----HILNEG--D 190 (245)
T ss_dssp ---SHHHHHHHHHHHHTT--CSSSEEEEEECCCCCGGGTCSS-----CCHH-HHHHHHHHHHHT--C----EECCCS--C
T ss_pred ---HHHHHHHHHHHHHHh--CCCcEEEEeccccCcccCCCCC-----cCcc-hHHHHHHHHHCC--c----EEecCC--C
Confidence 123555555554432 4579999999999875543211 1122 456777776665 4 344553 3
Q ss_pred ccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCcc
Q 006804 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 317 (630)
Q Consensus 238 ~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~~~SDH~ 317 (630)
.||||+.+.+. +.+.||||||++..+.. .|.++.|... ..+|||+
T Consensus 191 ~~T~~~~~~~~---~~~~rID~i~~s~~~~~-------------~v~~~~v~~~-------------------~~~SDH~ 235 (245)
T 1wdu_A 191 VPTFDTIRGGK---RYQSRVDVTFCTEDMLD-------------LIDGWRVDED-------------------LVSSDHN 235 (245)
T ss_dssp CCSEEC--------CCEECCEEEEECGGGBT-------------TEEEEEECTT-------------------SSSSSBC
T ss_pred CCcEECCCCCC---CCCCEEEEEEeChHHHh-------------hccceEEcCC-------------------CCCCCcc
Confidence 59999886532 34799999999987643 5788888642 3789999
Q ss_pred ceEEEEee
Q 006804 318 PVYMCLGE 325 (630)
Q Consensus 318 PV~~~L~~ 325 (630)
||+++|.+
T Consensus 236 Pv~~~l~l 243 (245)
T 1wdu_A 236 GMVFNIRL 243 (245)
T ss_dssp CEEEEECC
T ss_pred cEEEEEEe
Confidence 99999975
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.95 E-value=4.9e-27 Score=251.57 Aligned_cols=231 Identities=15% Similarity=0.184 Sum_probs=141.2
Q ss_pred CEEEEeccccccc--cchhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEE
Q 006804 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (630)
Q Consensus 1 mrIlSwNInGlr~--~~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (630)
|||+||||+|+.. ...|...|.++|..++||||||||+.. ..+..-.....+|..|+. +..++.|+|||
T Consensus 120 lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~--~~~~~l~~~~~~y~~~~~-------~~~~~~G~aIl 190 (362)
T 4gew_A 120 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVD--RDLAPIDKLQSLYKIYYS-------NKGCQYYTAIL 190 (362)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECS--TTCHHHHGGGGTEEEEES-------STTSSSEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCCh--hHhHHHHHhcCCceEEeC-------CCCCCceEEEE
Confidence 7999999999854 333445699999999999999999853 223211123345555443 22445699999
Q ss_pred EeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCc-EEEE--e--cceEEEEEEecCCCCCC
Q 006804 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVIT--D--HGHFILFNVYGPRADSE 153 (630)
Q Consensus 79 sR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv--~--~~~~~LinVY~P~~~~~ 153 (630)
+|.++ ++. ...+.... ....+| ++.+ . ...|.|+|+|+++....
T Consensus 191 sk~~i---------~~~-~~~~~~~~---------------------~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~ 239 (362)
T 4gew_A 191 VSKMF---------DVE-KHDVIHFQ---------------------NSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 239 (362)
T ss_dssp EETTE---------EEE-EEEEEECT---------------------TCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred EeccC---------ccc-cccccCCC---------------------CCcccceEEEEEEEECCEEEEEEEecCCccccc
Confidence 99731 111 11110000 011222 2222 2 34799999999986543
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH--hcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceeccccc
Q 006804 154 DTVRIQFKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231 (630)
Q Consensus 154 ~~~r~~~k~~fl~~L~~~i~~l~--~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~ 231 (630)
..+ |...+..+...+..+. ..+.+|||+||||..+...+.. .. +|.|+|+..
T Consensus 240 ~~~----R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~~--------------------~~--gl~Da~~~~ 293 (362)
T 4gew_A 240 RPQ----RCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--------------------PD--GVKDAWEAA 293 (362)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCCC--------------------CT--TCEEHHHHT
T ss_pred hhH----HHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccchh--------------------cc--hHHHHHHHh
Confidence 222 3334444444444432 4568999999999865542210 02 499999998
Q ss_pred CCCCCCccccCCCCCCCccC--CccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCC
Q 006804 232 HPERREAYTCWPSNTGAEQF--NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMST 309 (630)
Q Consensus 232 hP~~~~~yT~ws~~~~a~~~--n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~ 309 (630)
++.....||||......... ..+.||||||+++.+ .+..+.+....+. + ..
T Consensus 294 ~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l---------------~~~~~~vi~~~ri------~------~~ 346 (362)
T 4gew_A 294 GSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRI------R------SC 346 (362)
T ss_dssp TCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEESSC---------------CEEEEEEECCSCC------T------TT
T ss_pred CCCCCCCcCcccccCcccccCCCCCcceEEEEEcCCc---------------ceeEEEEEeeeec------C------CC
Confidence 87655569999876554433 345799999999875 3445554432110 0 01
Q ss_pred CCCCCCccceEEEEe
Q 006804 310 RLEGSDHAPVYMCLG 324 (630)
Q Consensus 310 ~~~~SDH~PV~~~L~ 324 (630)
+..+|||+||+++|.
T Consensus 347 ~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 347 LCFPSDHWAINATFF 361 (362)
T ss_dssp SSCSCSSCEEEEEEE
T ss_pred CCCCCcccCEEEEEc
Confidence 235799999999995
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.94 E-value=1.6e-25 Score=223.15 Aligned_cols=231 Identities=15% Similarity=0.191 Sum_probs=137.0
Q ss_pred CEEEEecccccccc--chhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEE
Q 006804 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (630)
Q Consensus 1 mrIlSwNInGlr~~--~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (630)
|||+||||+|+... ..|...|.++|+.++||||||||+.- ..+ ..+....+|..++... ..+..|++|+
T Consensus 14 l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~-~~l~~~~~~~~~~~~~------~~~~~g~~il 84 (256)
T 4fva_A 14 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVD--RDL-APIDKLQSLYKIYYSN------KGCQYYTAIL 84 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECS--TTC-HHHHGGGGTEEEEESS------TTSSSEEEEE
T ss_pred EEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecCh--hHh-HHHHHhcCCceEeecC------CCCCcceEEE
Confidence 69999999998543 23334699999999999999999853 222 2233344444444322 2344699999
Q ss_pred EeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCc-EEEE--e--cceEEEEEEecCCCCCC
Q 006804 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVIT--D--HGHFILFNVYGPRADSE 153 (630)
Q Consensus 79 sR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv--~--~~~~~LinVY~P~~~~~ 153 (630)
++.++ ++.....+ .+. ....++ ++.+ . ...|.|+|+|+++....
T Consensus 85 ~~~~~---------~~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~ 133 (256)
T 4fva_A 85 VSKMF---------DVEKHDVI-HFQ---------------------NSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 133 (256)
T ss_dssp EETTC---------EEEEEEEE-ECT---------------------TCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred Eeecc---------cceecccc-cCC---------------------CCcccceeEEEEEEeCCeEEEEEEecCCCCCcc
Confidence 99742 22211111 000 001122 2222 2 35699999999886543
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH--hcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceeccccc
Q 006804 154 DTVRIQFKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231 (630)
Q Consensus 154 ~~~r~~~k~~fl~~L~~~i~~l~--~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~ 231 (630)
..++. ..+..+...+..+. ..+.+|||+||||..+...... .. +|.|+|+..
T Consensus 134 ~~~~~----~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~--------------------~~--~~~d~~~~~ 187 (256)
T 4fva_A 134 RPQRC----AQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--------------------PD--GVKDAWEAA 187 (256)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC--------------------CT--TCEEHHHHT
T ss_pred hHHHH----HHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh--------------------hc--chhhHHHHh
Confidence 22222 22333333333332 4578999999999765432110 02 389999988
Q ss_pred CCCCCCccccCCCCCCCcc--CCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCC
Q 006804 232 HPERREAYTCWPSNTGAEQ--FNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMST 309 (630)
Q Consensus 232 hP~~~~~yT~ws~~~~a~~--~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~ 309 (630)
++.....|||+........ ..+..||||||+++.+ .+..+.+....+.. ..
T Consensus 188 ~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~---------------~~~~~~~~~~~~~~------------~~ 240 (256)
T 4fva_A 188 GSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRIR------------SC 240 (256)
T ss_dssp TCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEESSC---------------CEEEEEEECCSCCT------------TT
T ss_pred CCCCCCCcccccccCcccccCCCCCcCeEEEEEcCCc---------------eeeEEEEEeeEecC------------CC
Confidence 7765556999876544322 2345799999999875 34555554321100 01
Q ss_pred CCCCCCccceEEEEe
Q 006804 310 RLEGSDHAPVYMCLG 324 (630)
Q Consensus 310 ~~~~SDH~PV~~~L~ 324 (630)
...+|||+||+++|.
T Consensus 241 ~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 241 LCFPSDHWAINATFF 255 (256)
T ss_dssp CSCSCSSCEEEEEEE
T ss_pred CCCcCcccCEEEEEc
Confidence 135799999999995
No 14
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.92 E-value=1.6e-24 Score=218.30 Aligned_cols=240 Identities=19% Similarity=0.189 Sum_probs=138.6
Q ss_pred CEEEEeccccccccc--hhhhHHHHHHhhcCCcEEEEeccccccc-----------c----chhHHHhhc--CCcEEEee
Q 006804 1 MKIVTYNVNGLRQRV--SQFGSLRKLLDSFDADIICFQETKLRRQ-----------E----LKSDLVMAD--GYESFFSC 61 (630)
Q Consensus 1 mrIlSwNInGlr~~~--~r~~~l~~~L~~l~aDIIcLQETk~~~~-----------~----l~~~l~~~~--GY~~~fs~ 61 (630)
|||+||||+++.... .+...|.++|..++||||||||+..... . +.+.+.... +|..++..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~ 83 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSN 83 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEE
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Confidence 799999998764321 1223588999999999999999964321 1 222222222 37665433
Q ss_pred cccCCCCCCcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEec----
Q 006804 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH---- 137 (630)
Q Consensus 62 ~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~---- 137 (630)
... ....+..|+|||+|.+ +.....+ .+... +. . ...+ ..+++.+.+
T Consensus 84 ~~~--~~~~~~~g~ailsr~~-----------~~~~~~~-~~~~~--~~----~--------~~~~-~r~~~~~~~~~~~ 134 (266)
T 3teb_A 84 SHI--GFGKYNEGVAVITRHK-----------IKAEDEF-YCTFA--QS----V--------RTIS-ARRIVSITINYEG 134 (266)
T ss_dssp EEE--CSTTEEEEEEEEESSC-----------CSEEEEE-ECSSC--CC----T--------TCTT-CCEEEEEEEEETT
T ss_pred ccc--CccccCCeEEEEECce-----------ecCceeE-EeCCC--CC----C--------CCcc-cceEEEEEEEeCC
Confidence 211 1123345999999873 2111111 00000 00 0 0011 123333332
Q ss_pred ceEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHH
Q 006804 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 217 (630)
Q Consensus 138 ~~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL 217 (630)
..|.|+|+|++........| ...+..|.+.+ ..+.++||+||||..+.. . ...++.++
T Consensus 135 ~~~~v~~~Hl~~~~~~~~~r----~~q~~~l~~~~----~~~~~~il~GDfN~~~~~-----------~---~~~~~~l~ 192 (266)
T 3teb_A 135 QDIEFYSCHMNLPNCETEDM----GKNIQTILNRT----QNSNLKILMGDFNTDAIG-----------N---VAAYENIL 192 (266)
T ss_dssp EEEEEEEEECCCTTCTTCCH----HHHHHHHHTSS----CSCCEEEEEEECCCCTTT-----------C---HHHHHHHH
T ss_pred eEEEEEEecCCCccCChHHH----HHHHHHHHHHH----hcCCcEEEEeECCCCCCC-----------C---CcHHHhhc
Confidence 57999999998864322233 33344443332 237899999999986521 0 12344444
Q ss_pred HHcCCcceecccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCC
Q 006804 218 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 297 (630)
Q Consensus 218 ~~~g~~l~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~ 297 (630)
.. +|.|+|+..++...+ |||............+.||||||+++.+ .+..+.+.....
T Consensus 193 -~~--~l~d~~~~~~~~~~~-~t~~~~~~~~~~~~~~~riD~i~~s~~~---------------~~~~~~v~~~~~---- 249 (266)
T 3teb_A 193 -SQ--GLFDTYVMAEKKDDG-ITVDKSIHGWDNDKAKKRLDYIFSNKEL---------------KVKESKVIFNNK---- 249 (266)
T ss_dssp -TT--TCEEHHHHCSEECCC-CCEECC------CTTEECCEEEEESSCC---------------CEEEEEEESSSS----
T ss_pred -cc--cccchHHhhccccCC-ccccCccCCcCcCCcCCeeEEEEeCCCe---------------EEEEEEEEeCCC----
Confidence 23 499999999987554 8884433222122467899999999875 567788776411
Q ss_pred CCCCCcCCCCCCCCCCCCccceEEEEee
Q 006804 298 GNAPRWKGGMSTRLEGSDHAPVYMCLGE 325 (630)
Q Consensus 298 ~~~~~w~~g~~~~~~~SDH~PV~~~L~~ 325 (630)
.+...|||+||+++|.+
T Consensus 250 -----------~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 250 -----------NKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp -----------SSCCCSSSCEEEEEECC
T ss_pred -----------CCCCcCCccCEEEEEEC
Confidence 11367999999999863
No 15
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.92 E-value=1.2e-23 Score=211.99 Aligned_cols=240 Identities=18% Similarity=0.145 Sum_probs=143.3
Q ss_pred CEEEEeccccccccc------hhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCccee
Q 006804 1 MKIVTYNVNGLRQRV------SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSG 74 (630)
Q Consensus 1 mrIlSwNInGlr~~~------~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysG 74 (630)
|||+||||++.+..- .+...+.++|..++||||||||+... .+ ..+....||..+..... .+ .+..|
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~-~~l~~~l~y~~~~~~~~---~~-~~~~g 73 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPN--QV-RDLKAYTTFTCLSAERE---GD-GQGEG 73 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHH--HH-HHHHHHSSSEEEEEESS---SS-SCSCE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHH--HH-HHHHhcCCCcEEEeccc---CC-CCCce
Confidence 799999999886542 23345999999999999999999632 22 23444459976554331 22 23459
Q ss_pred EEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEE---Ee----cceEEEEEEec
Q 006804 75 VATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI---TD----HGHFILFNVYG 147 (630)
Q Consensus 75 VAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~ii---v~----~~~~~LinVY~ 147 (630)
+|||+|.. ..|+.....+ .+... +... +. ..-..+.|.++ ++ ...+.|+|+|+
T Consensus 74 ~ail~r~~--------~~~~~~~~~~-~l~~~--~~~~-~~--------~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl 133 (257)
T 3l1w_A 74 LAILYNEQ--------KVQAIDTGYF-WLSET--PQQP-SI--------HPEAGCPRIALWGLFKETTQNTPFLVINVHL 133 (257)
T ss_dssp EEEEECTT--------TEEEEEEEEE-ESSSS--TTSS-CC--------CTTCSSCCEEEEEEEEETTCSSCEEEEEEEC
T ss_pred EEEEEEcc--------eEEEEecCeE-ECcCC--CCcc-cc--------cccccccceeEEEEEEEcCCCCEEEEEEeCC
Confidence 99999852 0233222111 01000 0000 00 00012345433 22 24699999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceec
Q 006804 148 PRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227 (630)
Q Consensus 148 P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~ 227 (630)
+..+. ..|..++..|.+.+++.+..+ ||||+||||..+.. . .++ +|. . +|.|+
T Consensus 134 ~~~~~------~~r~~q~~~l~~~i~~~~~~~-pvil~GDfN~~~~~------------~----~~~-~l~-~--~l~d~ 186 (257)
T 3l1w_A 134 DHISA------HARLAGMTVILEELHDKIAQY-PTLLMGDFNAESGE------------E----VHQ-LVQ-K--KFQDS 186 (257)
T ss_dssp CSSCH------HHHHHHHHHHHHHTHHHHHHS-CEEEEEECCCCTTS------------H----HHH-HHT-T--TCEEG
T ss_pred CCCCH------HHHHHHHHHHHHHHHHHcCCC-CEEEEeeCCCCCCc------------H----HHH-Hhh-h--hccch
Confidence 87542 235556666666666333344 99999999975432 1 122 332 2 49999
Q ss_pred ccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCC
Q 006804 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGM 307 (630)
Q Consensus 228 ~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~ 307 (630)
|+..++... .+||.+... .++.+.+.||||||+ ..+ .+.++.+.....
T Consensus 187 ~~~~~~~~~-~~t~~~~~~-~~~~~~~~riD~i~~-~~~---------------~~~~~~v~~~~~-------------- 234 (257)
T 3l1w_A 187 KNLATHYGP-RGTFQNFTY-TKPWAELEEIDYIYV-KGW---------------QVQQTASLTDSI-------------- 234 (257)
T ss_dssp GGTSEEESC-SCCBCTTCT-TCCGGGCBCCEEEEE-ESE---------------EEEEEEECCCCB--------------
T ss_pred hhhhcccCC-CCcccCCcc-cCCCCCCCceeEEEE-CCc---------------EEEEEEEeccCc--------------
Confidence 998876533 377755432 123345699999999 553 567777765311
Q ss_pred CCCCCCCCccceEEEEeecC
Q 006804 308 STRLEGSDHAPVYMCLGEVP 327 (630)
Q Consensus 308 ~~~~~~SDH~PV~~~L~~~~ 327 (630)
....+|||+||+++|.+..
T Consensus 235 -~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 235 -DGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp -TTBCSSSBCCEEEEEEEC-
T ss_pred -CCcccCCcceEEEEEEEEe
Confidence 1136899999999998643
No 16
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.91 E-value=1.2e-23 Score=206.24 Aligned_cols=237 Identities=16% Similarity=0.166 Sum_probs=135.5
Q ss_pred CEEEEecccccccc--chhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEE
Q 006804 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (630)
Q Consensus 1 mrIlSwNInGlr~~--~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (630)
|||+||||+|+... ..|...|.++|+.++||||||||+.. +.+ ..+....++..++... ..++.|++++
T Consensus 4 l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~-~~l~~~~~~~~~~~~~------~~~~~~~~~~ 74 (250)
T 4f1h_A 4 LSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIP--AYV-QYLKKRAVSYLFFEGS------DDGYFTGIML 74 (250)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECH--HHH-HHHHHHCTTEEEEESC------SSSSEEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCH--HHH-HHHHHhccCceeeccc------ccccCceeEE
Confidence 79999999998643 22334699999999999999999852 222 2344445555555432 2344577777
Q ss_pred EeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEE-EEe----cceEEEEEEecCCCCCC
Q 006804 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-ITD----HGHFILFNVYGPRADSE 153 (630)
Q Consensus 79 sR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~i-iv~----~~~~~LinVY~P~~~~~ 153 (630)
.+.+ .++.....+. . .....++.+ .+. ...+.++++|++.....
T Consensus 75 ~~~~---------~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~ 123 (250)
T 4f1h_A 75 RKSR---------VKFLESEIIC-F---------------------PTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQ 123 (250)
T ss_dssp ETTT---------CEEEEEEEEE-C---------------------TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG
T ss_pred eecc---------ccceeccccc-c---------------------cCccccceEEEEEEecCCcEEEEecccccccccc
Confidence 6653 2332221110 0 011223332 222 34689999999876532
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceecccccCC
Q 006804 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233 (630)
Q Consensus 154 ~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~hP 233 (630)
. ..+..++..|.+.+++. ..+.||||+||||+.+...+... + ....+.|+|+..++
T Consensus 124 ~----~~r~~q~~~~~~~l~~~-~~~~pvIl~GDfN~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~ 179 (250)
T 4f1h_A 124 S----QERTKQLRVVLQKIKEA-PEDAIVIFAGDTNLRDAEVANVG-----------------G--LPAGVCDVWEQLGK 179 (250)
T ss_dssp H----HHHHHHHHHHHHHHHHS-CTTEEEEEEEECCCCHHHHHTTT-----------------S--SCTTEEEHHHHTTC
T ss_pred H----HHHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCcchhhhh-----------------h--ccccchHHHHHhcC
Confidence 2 23344555555555442 35679999999997654322110 0 11248888888887
Q ss_pred CCCCccccCCCCCC--CccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCC
Q 006804 234 ERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRL 311 (630)
Q Consensus 234 ~~~~~yT~ws~~~~--a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~~ 311 (630)
.....++|+..... ......+.||||||+++..... . ..+....+....+ . ....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~--~--------~~~~~~~~~~~~~------~-------~~~~ 236 (250)
T 4f1h_A 180 QEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAP--P--------VTPDHMALIGMEK------L-------DCGR 236 (250)
T ss_dssp CGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSC--C--------CEEEEEEEECCSC------C-------TTSS
T ss_pred CccCCcccccccCCCCCcCCCCCccEEEEEEeCccccc--c--------eeeeEEEEecccc------c-------CCCC
Confidence 76555665544322 2233567899999999865320 0 0223333322100 0 0123
Q ss_pred CCCCccceEEEEe
Q 006804 312 EGSDHAPVYMCLG 324 (630)
Q Consensus 312 ~~SDH~PV~~~L~ 324 (630)
.+|||+||+++|+
T Consensus 237 ~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 237 YTSDHWGIYCTFN 249 (250)
T ss_dssp CSCSBCEEEEEEE
T ss_pred CCCcccCEEEEEe
Confidence 5799999999996
No 17
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.91 E-value=6.3e-24 Score=211.18 Aligned_cols=236 Identities=15% Similarity=0.124 Sum_probs=131.6
Q ss_pred CEEEEecccccccc--chhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCcceeEEEE
Q 006804 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (630)
Q Consensus 1 mrIlSwNInGlr~~--~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (630)
|||+||||+|+... ..|...|.++|+.++||||||||+. .+.+ ..+ ....+.+++... +..++ |.+++
T Consensus 10 l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~--~~~~-~~l-~~~~~~~~~~~~-----~~~~~-~~~~l 79 (256)
T 4gz1_A 10 ISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVI--PPYC-AYL-KKRAASYTIITG-----NEEGY-FTAIL 79 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEEC--HHHH-HHH-HHHCTTEEEEES-----CSSSS-EEEEE
T ss_pred EEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCC--HHHH-HHH-Hhhccccceeec-----cccCC-ceEEE
Confidence 69999999998643 2333469999999999999999984 2222 222 223333333322 22344 55666
Q ss_pred EeecCCCCCcccccceeee-ecccccccccCcccccCcccccchhhcccCCCCc-EEEEe----cceEEEEEEecCCCCC
Q 006804 79 CRVKSPFSSTEVALPVAAE-EGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITD----HGHFILFNVYGPRADS 152 (630)
Q Consensus 79 sR~~~~f~~~~~~~Pi~~e-egl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~----~~~~~LinVY~P~~~~ 152 (630)
++.. ++... ....... ....++ ++.+. ...+.|+|+|+++...
T Consensus 80 ~~~~----------~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~ 128 (256)
T 4gz1_A 80 LKKG----------RVKFKSQEIIPFP---------------------NTKMMRNLLCVNVSLGGNEFCLMTSHLESTRE 128 (256)
T ss_dssp EETT----------TEEEEEEEEEECT---------------------TCSSCCEEEEEEEEETTEEEEEEECBCCCSGG
T ss_pred EEec----------cccceecccccCC---------------------cccccceEEEEEEEeCCEEEEEEeeccccccc
Confidence 5552 22111 1110000 011122 22222 3579999999987653
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcceecccccC
Q 006804 153 EDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232 (630)
Q Consensus 153 ~~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D~~R~~h 232 (630)
.. ..+..++..+...+++. ..+.+|||+||||+.+...+. ..+ ....+.|+|+..+
T Consensus 129 ~~----~~~~~q~~~~~~~l~~~-~~~~pvIl~GDfN~~~~~~~~-----------------~~~--~~~~~~~~~~~~~ 184 (256)
T 4gz1_A 129 HS----AERIRQLKTVLGKMQEA-PDSTTVIFAGDTNLRDQEVIK-----------------CGG--LPDNVFDAWEFLG 184 (256)
T ss_dssp GH----HHHHHHHHHHHHHHHHS-CTTSEEEEEEECCCCHHHHHH-----------------HTC--SCTTEEEHHHHTT
T ss_pred ch----hhhhHHHHHHhhhhhhc-cCcceEEEeCccCCCcchhhh-----------------hhh--ccchhhhHHHHhc
Confidence 22 22334444444444432 456899999999975432111 011 1224889998887
Q ss_pred CCCCCccccCCCCC--CCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCC
Q 006804 233 PERREAYTCWPSNT--GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTR 310 (630)
Q Consensus 233 P~~~~~yT~ws~~~--~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g~~~~ 310 (630)
+.....|+|+.... .....+.+.||||||+++.... + .+..+++....+. ...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~----~--------~~~~~~~~~~~~~-------------~~~ 239 (256)
T 4gz1_A 185 KPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGH----L--------IPQSLDLVGLEKL-------------DCG 239 (256)
T ss_dssp CCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CS----E--------EEEEEEEECCSCC-------------TTS
T ss_pred CCCCCCcccccCCCCccccCCCCCccEEEEEEECCccc----e--------eeeEEEEEecccc-------------CCC
Confidence 66554466655432 2234467889999999876421 1 2344444332100 112
Q ss_pred CCCCCccceEEEEeec
Q 006804 311 LEGSDHAPVYMCLGEV 326 (630)
Q Consensus 311 ~~~SDH~PV~~~L~~~ 326 (630)
..+|||+||+++|++.
T Consensus 240 ~~~SDH~pv~a~~~iv 255 (256)
T 4gz1_A 240 RFPSDHWGLLCTLNVV 255 (256)
T ss_dssp SCSCSBCEEEEEEEEC
T ss_pred CCCCccccEEEEEEEE
Confidence 4679999999999863
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.90 E-value=9e-23 Score=206.95 Aligned_cols=245 Identities=17% Similarity=0.169 Sum_probs=144.3
Q ss_pred CEEEEecccccccc------chhhhHHHHHHhhcCCcEEEEeccccccccchhHHHhh-cCCcEEEeecccCCCCCCcce
Q 006804 1 MKIVTYNVNGLRQR------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA-DGYESFFSCTRTSDKGRTGYS 73 (630)
Q Consensus 1 mrIlSwNInGlr~~------~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~~-~GY~~~fs~~~~~~~gr~Gys 73 (630)
|||+||||++.+.. ..+...+.++|..++||||||||+... .+ ..+... .+|..+..... .+..+..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~-~~l~~~l~~y~~~~~~~~---~~~~~g~ 77 (267)
T 3g6s_A 4 VRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHN--QF-QDLRAGLPEYDGIGVGRD---DGKTAGE 77 (267)
T ss_dssp EEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHH--HH-HHHHHHCTTEEEECCCTT---TSSSSSC
T ss_pred EEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHH--HH-HHHHHhccCCcEEEecCC---CCCcCCc
Confidence 69999999987631 122345999999999999999999732 22 223333 68876553221 2222334
Q ss_pred eEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEE-EE--e----cceEEEEEEe
Q 006804 74 GVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-IT--D----HGHFILFNVY 146 (630)
Q Consensus 74 GVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~i-iv--~----~~~~~LinVY 146 (630)
|+|||+|.. ..|+.....+ .+... +... +.. ..-....|.+ .+ . ...|.|+|+|
T Consensus 78 ~~ail~~~s--------~~~~~~~~~~-~l~~~--~~~~-~~~-------~~~~~~~R~~~~~~~~~~~~~~~~~v~~~H 138 (267)
T 3g6s_A 78 YAPLFYRKD--------KYEVLDSNTF-WLAEN--PDSV-GMM-------GWDAVCVRIATWAKFKDKATGKIFMAVNTH 138 (267)
T ss_dssp BCCEEEETT--------TEEEEEEEEE-ESSSC--TTST-TCC-------CTTCSSCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred eeEEEEEcc--------ceEEEecccE-ecCCC--CCcc-ccc-------cccccCcceEEEEEEEEcCCCCEEEEEEeC
Confidence 699997752 1243222211 01000 0000 000 0011234532 22 2 2479999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCccee
Q 006804 147 GPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFD 226 (630)
Q Consensus 147 ~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~l~D 226 (630)
++.... ..|..++..|.+.++++. .+.++||+||||..+... .++ .|...+..|.|
T Consensus 139 l~~~~~------~~R~~q~~~l~~~l~~~~-~~~pvIl~GDfN~~~~~~----------------~~~-~l~~~~~~l~d 194 (267)
T 3g6s_A 139 FDHVGE------EARRQSALLIIRKIKEIV-GERPAVVTGDFNVTDASD----------------AYE-TITTNEFVMKD 194 (267)
T ss_dssp CCSSCH------HHHHHHHHHHHHHHHHHT-TTSCEEEEEECSSCTTSH----------------HHH-HHHSSSSCCEE
T ss_pred CCCCCH------HHHHHHHHHHHHHHHHhc-CCCCEEEEeECCCCCCCH----------------HHH-HhhcCCcchhh
Confidence 987541 334555666667776653 378999999999755421 122 23222114999
Q ss_pred cccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCC
Q 006804 227 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG 306 (630)
Q Consensus 227 ~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~~~~~~~~w~~g 306 (630)
+|+..++.....|||....... .+.+.||||||+++.+ .+..+.+....
T Consensus 195 ~~~~~~~~~~~~~T~~~~~~~~--~~~~~riD~I~~s~~~---------------~~~~~~v~~~~-------------- 243 (267)
T 3g6s_A 195 AYKTAARVTGVDYTFHDFARIP--AEDCEKIDFIFVTPQV---------------LVKSCEIPAEV-------------- 243 (267)
T ss_dssp HHHHCSEEEECSCSBCTTTTSC--GGGCCCCEEEEECTTS---------------EEEEEEECCCC--------------
T ss_pred hHhhhccccCCCCCEeCCCCCC--CCCCCcEeEEEeCCCc---------------eEEEEEEecCC--------------
Confidence 9998764322247877654321 2456899999999875 67788887641
Q ss_pred CCCCCCCCCccceEEEEeecC
Q 006804 307 MSTRLEGSDHAPVYMCLGEVP 327 (630)
Q Consensus 307 ~~~~~~~SDH~PV~~~L~~~~ 327 (630)
..+ ..|||+||++++...+
T Consensus 244 -~~~-~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 244 -PEA-LLSDHNPQLADLELEH 262 (267)
T ss_dssp -SSS-CCCSBCCEEEEEEEC-
T ss_pred -CCC-CCCCcccEEEEEEecc
Confidence 002 4799999999998654
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.88 E-value=8e-22 Score=203.21 Aligned_cols=212 Identities=15% Similarity=0.117 Sum_probs=116.2
Q ss_pred CEEEEecccccccc-------chhhhHHHHHHhhcCCcEEEEecccccc--ccchhHHHhhcCCcEEEeecccC---C--
Q 006804 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTRTS---D-- 66 (630)
Q Consensus 1 mrIlSwNInGlr~~-------~~r~~~l~~~L~~l~aDIIcLQETk~~~--~~l~~~l~~~~GY~~~fs~~~~~---~-- 66 (630)
|||+||||++++.. ..+...+...|...+||||||||+.... ..+.+.+ ..+|...+...... .
T Consensus 11 lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 88 (301)
T 1zwx_A 11 FKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNL--REMYPHQTPVIGRSKHGWDK 88 (301)
T ss_dssp CEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTTSCSTTCSE
T ss_pred eEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHH--hhcCCccccccCCccccccc
Confidence 79999999987432 1222335556778999999999997532 1221111 22333211110000 0
Q ss_pred ------CCCCcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCc-EEEEec--
Q 006804 67 ------KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH-- 137 (630)
Q Consensus 67 ------~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~~-- 137 (630)
....+..|||||+|. |+.....+. +.. . .+.+ . .+.| ++.+.+
T Consensus 89 ~~g~~~~~~~~~~G~ailSr~-----------pi~~~~~~~-~~~---~---~~~~--------~--~~~r~~~~~~~~~ 140 (301)
T 1zwx_A 89 TEGNYSNFALEDGGVAVVSQW-----------PIVEKSQHI-FQR---G---GGAD--------R--LSNKGFAYVKIMK 140 (301)
T ss_dssp EEC-----CCBCCCCEEEESS-----------CEEEEEEEE-CSC---C---CGGG--------G--GBCCEEEEEEEEE
T ss_pred cccccccccccCCCEEEEecC-----------CcccceEEE-ecC---C---CCcc--------c--ccCCCeEEEEEEE
Confidence 011244699999997 433222110 000 0 0000 0 1123 333332
Q ss_pred --ceEEEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHHHH-HhcCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHH
Q 006804 138 --GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW 212 (630)
Q Consensus 138 --~~~~LinVY~P~~~~~~--~~r~~~k~~fl~~L~~~i~~l-~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~ 212 (630)
..|.|+|+|+++..... ......|..++..|.++++.. ...+.++|||||||..+... .
T Consensus 141 ~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~----------------~ 204 (301)
T 1zwx_A 141 NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTD----------------E 204 (301)
T ss_dssp TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSH----------------H
T ss_pred CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcH----------------H
Confidence 47999999998764321 134456777888888877765 34568999999999876431 2
Q ss_pred HHHHHHHcCCcce--ecccccCCCCCCccccCCCCC----CCccCCccceEEEEEEeCCC
Q 006804 213 FRSMLVESGGSFF--DVFRSKHPERREAYTCWPSNT----GAEQFNYGTRIDHILCAGPC 266 (630)
Q Consensus 213 l~~lL~~~g~~l~--D~~R~~hP~~~~~yT~ws~~~----~a~~~n~gsRIDyILvs~~l 266 (630)
++.++...+ +. |+|+- . .|||..... ..++...+.||||||+++..
T Consensus 205 ~~~l~~~~~--~~~~d~~~g-----~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~~~~~ 256 (301)
T 1zwx_A 205 YHDMLKLLN--VSSPANFNG-----Q-MATWDPTTNSMLKESYPKAAPEYLDYIFVENGH 256 (301)
T ss_dssp HHHHHHHHT--BCCCTTCCT-----T-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTS
T ss_pred HHHHHHHcC--CCCCccccC-----C-CceECCccCccccccCCCCCcceEeEEEEeCCC
Confidence 334444344 54 88762 1 267643111 01222347899999999864
No 20
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=9.9e-21 Score=196.08 Aligned_cols=259 Identities=19% Similarity=0.208 Sum_probs=138.5
Q ss_pred CEEEEecccccccc--------chhhhHHHHHHhhcCCcEEEEeccccccccchhHHHh-hcCCcEEEeecccCCCCCCc
Q 006804 1 MKIVTYNVNGLRQR--------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVM-ADGYESFFSCTRTSDKGRTG 71 (630)
Q Consensus 1 mrIlSwNInGlr~~--------~~r~~~l~~~L~~l~aDIIcLQETk~~~~~l~~~l~~-~~GY~~~fs~~~~~~~gr~G 71 (630)
|||+||||+..+.. ..+...|.++|..++||||||||+.. +.+ +.+.. ..+|..+.. .+. .|...
T Consensus 7 lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~--~~~-~~l~~~l~~y~~~~~-~~~--~g~~~ 80 (298)
T 3mpr_A 7 LTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFL--HQL-KDMKEALPGYDYIGV-GRD--DGKDK 80 (298)
T ss_dssp EEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCH--HHH-HHHHHHSTTEEEECC-CTT--TSSSS
T ss_pred EEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCH--HHH-HHHHHhCCCCcEEEE-ecC--CCCCC
Confidence 69999999765431 12224699999999999999999963 222 22322 346765433 211 12122
Q ss_pred ceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEE-EE--e----cceEEEEE
Q 006804 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-IT--D----HGHFILFN 144 (630)
Q Consensus 72 ysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~i-iv--~----~~~~~Lin 144 (630)
..|+|||+|.. ..|+.....+ .+... +... +.+ .-....|.+ .+ . ...|.|+|
T Consensus 81 g~~~aily~~s--------r~~i~~~~~~-~l~~~--p~~~-~~~--------~~~~~~R~~~~~~~~~~~~g~~~~v~~ 140 (298)
T 3mpr_A 81 GEHSAIFYRTD--------KFDIVEKGDF-WLSET--PDVP-SKG--------WDAVLPRICSWGHFKCKDTGFEFLFFN 140 (298)
T ss_dssp SCBCCEEEETT--------TEEEEEEEEE-ESSSS--TTSS-CCC--------TTCSSCCEEEEEEEEETTTCCEEEEEE
T ss_pred CceeEEEEecC--------ceEEEeccEE-EccCC--CCcc-Ccc--------cccccCceeEEEEEEEcCCCCEEEEEE
Confidence 23599996641 1244322211 01000 0000 000 001133432 22 2 24799999
Q ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEeCCCCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCc
Q 006804 145 VYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS 223 (630)
Q Consensus 145 VY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~-~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~r~~l~~lL~~~g~~ 223 (630)
+|++..+ ...|...+..|.+.++.+.. .+.+||||||||..+.. ..++.+. .. +.
T Consensus 141 ~Hl~~~~------~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~----------------~~~~~l~-~~-g~ 196 (298)
T 3mpr_A 141 LHMDHIG------KKARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTH----------------QSYDAFV-SK-GV 196 (298)
T ss_dssp EECCSSC------HHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTS----------------HHHHHHH-TT-SS
T ss_pred ecCCCCC------HHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------------HHHHHHh-cC-Cc
Confidence 9998643 13355566666666666432 46899999999976532 1233333 22 25
Q ss_pred ceecccccCCCCCCccccCCCCCCCccCCccceEEEEEEeCCCcccccccccccccccceeeeEeecccccC--------
Q 006804 224 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW-------- 295 (630)
Q Consensus 224 l~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~ll~~~~~l~~~~~~~~~v~~~~Il~~~~~~-------- 295 (630)
|.|+|+...+.....+||...... ...+.||||||+++.+ .+..+.++......
T Consensus 197 l~D~~~~~~~~~~~~~T~~~~~~~---~~~~~rID~Il~s~~~---------------~v~~~~v~~~~~~~~~~~~~~~ 258 (298)
T 3mpr_A 197 LCDSYEKCDYRYALNGTFNNFDPN---SFTESRIDHIFVSPSF---------------HVKRYGVLTDTYRSVRENSKKE 258 (298)
T ss_dssp SEEHHHHCSEEECSSCSBCTTCTT---CCCSCCCEEEEECTTS---------------EEEEEEECCCCEEEECC-----
T ss_pred chhhHhhhcccCCCCCCccCCCCC---CCCCceEEEEEeCCCe---------------eEEEEEEecCccccCCCccccc
Confidence 999998776432223676544321 1246899999999875 56666665431100
Q ss_pred CCCCCC-CcCCCCCCCCCCCCccceEEEEeecC
Q 006804 296 KPGNAP-RWKGGMSTRLEGSDHAPVYMCLGEVP 327 (630)
Q Consensus 296 ~~~~~~-~w~~g~~~~~~~SDH~PV~~~L~~~~ 327 (630)
...+.+ .+.-........|||+||+++|....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~~ 291 (298)
T 3mpr_A 259 DVRDCPEEITIKAYEARTPSDHFPVKVELVFDL 291 (298)
T ss_dssp -----------CCEEEECSSSBCCEEEEEEECS
T ss_pred CcccchhhhccChhhcccCCCCCcEEEEEecch
Confidence 000000 00000000125699999999998643
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.85 E-value=1.8e-20 Score=193.25 Aligned_cols=216 Identities=15% Similarity=0.126 Sum_probs=115.0
Q ss_pred CEEEEecccccccc-------chhhhHHHHHHhhcCCcEEEEeccccccc--cchhHHHhhcCCcE--------------
Q 006804 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRRQ--ELKSDLVMADGYES-------------- 57 (630)
Q Consensus 1 mrIlSwNInGlr~~-------~~r~~~l~~~L~~l~aDIIcLQETk~~~~--~l~~~l~~~~GY~~-------------- 57 (630)
|||+||||++++.. ..+...+..++...+||||||||+..... .+.+.+ ..+|..
T Consensus 10 lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 87 (306)
T 2ddr_A 10 LKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNL--KKEYPNQTAVLGRSSGSEWD 87 (306)
T ss_dssp EEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHH--TTTCCEECCCTTSCCSTTSS
T ss_pred EEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHH--hhhCCceeeccCcccccccc
Confidence 69999999998531 12223355567788999999999965321 221111 223322
Q ss_pred -EEeecccCCCCCCcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCc-EEEE
Q 006804 58 -FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVIT 135 (630)
Q Consensus 58 -~fs~~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv 135 (630)
.+.... ....+..|||||+|. |+.....+. +.. + .+.+ ..+.| ++.+
T Consensus 88 ~~~~~~~---~~~~~~~G~ailSr~-----------pi~~~~~~~-~~~---~---~~~~----------~~~~r~~~~~ 136 (306)
T 2ddr_A 88 KTLGNYS---SSTPEDGGVAIVSKW-----------PIAEKIQYV-FAK---G---CGPD----------NLSNKGFVYT 136 (306)
T ss_dssp EEEESCC---TTCSSCCCCEEEESS-----------CEEEEEEEE-CSC---C---C--------------CCCCEEEEE
T ss_pred ccccccc---ccCccCCeEEEEECC-----------CcccccEEE-cCC---C---CCcc----------hhcCCCeEEE
Confidence 221110 111344699999997 443222110 000 0 0000 01334 3333
Q ss_pred ec----ceEEEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHHHH-HhcCCeEEEeCCCCCCCCccccCCCCCCCCchH
Q 006804 136 DH----GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNE 208 (630)
Q Consensus 136 ~~----~~~~LinVY~P~~~~~~--~~r~~~k~~fl~~L~~~i~~l-~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~ 208 (630)
.+ ..|.|+|+|+++..... ......|..++..|.++++.. ...+.++|||||||..+...|... . ..
T Consensus 137 ~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~-----s-~~ 210 (306)
T 2ddr_A 137 KIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN-----D-SE 210 (306)
T ss_dssp EEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT-----T-SH
T ss_pred EEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccC-----C-HH
Confidence 32 46999999998764210 123455777788888877765 234679999999999876554311 1 11
Q ss_pred HHHHHHHHHHHcCCcceecccccCCCCCCccccCCCCCC----CccCCccceEEEEEEeCCC
Q 006804 209 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPC 266 (630)
Q Consensus 209 ~r~~l~~lL~~~g~~l~D~~R~~hP~~~~~yT~ws~~~~----a~~~n~gsRIDyILvs~~l 266 (630)
++.++...+ +.|. . +... .|||...... .++...+.||||||+++.+
T Consensus 211 ----~~~l~~~~~--~~~~--~--~~g~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~s~~~ 261 (306)
T 2ddr_A 211 ----YASMFKTLN--ASVP--S--YTGH-TATWDATTNSIAKYNFPDSPAEYLDYIIASKDH 261 (306)
T ss_dssp ----HHHHHHHHT--BCCC--E--EEEC-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTS
T ss_pred ----HHHHHHhcC--CCCc--c--cCCC-CcccCCCCCccccccCCCCCcceeeEEEEeCCC
Confidence 333443333 4442 1 1112 3787432110 1122347899999999875
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.81 E-value=4.1e-19 Score=186.20 Aligned_cols=211 Identities=17% Similarity=0.203 Sum_probs=116.5
Q ss_pred CEEEEeccccccc-------cchhhhHHHHHHhhcCCcEEEEecccccc--ccchhHHHhhcCCcEEEeecccCCCCCCc
Q 006804 1 MKIVTYNVNGLRQ-------RVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTRTSDKGRTG 71 (630)
Q Consensus 1 mrIlSwNInGlr~-------~~~r~~~l~~~L~~l~aDIIcLQETk~~~--~~l~~~l~~~~GY~~~fs~~~~~~~gr~G 71 (630)
|||+||||+++.. ...|...+..++...+||||||||+.... +.+.+.+ ...|.+.+.... .++.+
T Consensus 30 lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L--~~~~py~~~~~g---~~~~~ 104 (317)
T 3i41_A 30 LKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNV--KKEYPYQTPVLG---RSQSG 104 (317)
T ss_dssp CCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTT---SCSTT
T ss_pred eEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHH--HHhCCcccccCC---ccccC
Confidence 7999999998742 22232345666777999999999996432 2222222 223433221110 11111
Q ss_pred -------c-------eeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcE-EEE-
Q 006804 72 -------Y-------SGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC-VIT- 135 (630)
Q Consensus 72 -------y-------sGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~-iiv- 135 (630)
| .|++||+|. |+.....+. +.. . .+.+ ..+.|. +.+
T Consensus 105 ~~~~~~~y~~~~~~~~G~~ilSr~-----------Pi~~~~~~~-~~~---~---~~~d----------~~~~r~~~~~~ 156 (317)
T 3i41_A 105 WDKTEGSYSSTVAEDGGVAIVSKY-----------PIKEKIQHV-FKS---G---CGFD----------NDSNKGFVYTK 156 (317)
T ss_dssp CSEEEESCCSSCSBCCCCEEEESS-----------CEEEEEEEE-CSC---C---CSSG----------GGBCCEEEEEE
T ss_pred ccCcccccccccccCCccEEEeCC-----------CCccceeEE-CCC---C---CCcc----------cccCcceEEEE
Confidence 1 499999998 443222110 000 0 0000 012222 222
Q ss_pred ---ecceEEEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHHHH-HhcCCeEEEeCCCCCCCCccccCCCCCCCCchHH
Q 006804 136 ---DHGHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF 209 (630)
Q Consensus 136 ---~~~~~~LinVY~P~~~~~~--~~r~~~k~~fl~~L~~~i~~l-~~~g~pVII~GDFN~~~~~iD~~~~~~~~~~~~~ 209 (630)
....|.|+|+|+++..... ......|..++..|.++++.. ...+.+|||+||||..+..
T Consensus 157 i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s--------------- 221 (317)
T 3i41_A 157 IEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT--------------- 221 (317)
T ss_dssp EEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS---------------
T ss_pred EEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC---------------
Confidence 2346999999998765310 233456777888888888775 3457899999999987643
Q ss_pred HHHHHHHHHHcCCcceecccccCCCCCCccccCCCCCC----CccCCccceEEEEEEeCCCc
Q 006804 210 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 267 (630)
Q Consensus 210 r~~l~~lL~~~g~~l~D~~R~~hP~~~~~yT~ws~~~~----a~~~n~gsRIDyILvs~~ll 267 (630)
..++.++...+ +.|.-. ..+ .|||+..... .++.+...||||||++...+
T Consensus 222 -~~~~~l~~~l~--l~~~~~-~g~----~~t~d~~~n~~~~~~~p~~~~~rLDyIlvs~~~~ 275 (317)
T 3i41_A 222 -PEFKDMLKNLN--VNDVLY-AGH----NSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHK 275 (317)
T ss_dssp -HHHHHHHHHHT--BCCCEE-EEC----SCSBCTTTCHHHHHHCTTCCCBCCEEEEEBTTSC
T ss_pred -HHHHHHHHhcC--CCCccc-CCC----CcccCCCCCccccccCCCCCCcceEEEEEeCCcC
Confidence 12333443333 665421 111 2676654321 22334567999999998863
No 23
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.78 E-value=3.2e-18 Score=184.97 Aligned_cols=177 Identities=20% Similarity=0.272 Sum_probs=95.7
Q ss_pred CEEEEecccccc---------------ccchhhhHHHHHHhhcCCcEEEEecccccc--ccchhHHHhhcCCcEEEeec-
Q 006804 1 MKIVTYNVNGLR---------------QRVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCT- 62 (630)
Q Consensus 1 mrIlSwNInGlr---------------~~~~r~~~l~~~L~~l~aDIIcLQETk~~~--~~l~~~l~~~~GY~~~fs~~- 62 (630)
+||+||||..-. ....|...|.++|..++||||||||++... +.+ ...+...||..+|...
T Consensus 32 ~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l-~~~L~~~gY~~v~~~k~ 110 (398)
T 3ngq_A 32 FTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLF-LPALKERGYDGFFSPKS 110 (398)
T ss_dssp EEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTH-HHHHHHTTEEEEEEESC
T ss_pred EEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHH-HHHHHhCCceEEEecCC
Confidence 589999996421 111233468999999999999999997532 223 2345567999877642
Q ss_pred ccC---CCCCCcceeEEEEEeecCCCCCcccccceeeeecccccccccC-cccccCcccccchhhcccCCCCcEEEEec-
Q 006804 63 RTS---DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG-SKIMEGLEDFSKDELLKIDSEGRCVITDH- 137 (630)
Q Consensus 63 ~~~---~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~-~~~~~~~~~~~~~~~~~~D~eGR~iiv~~- 137 (630)
+.. ..++.++.|||||+|.. .|++. +.+...+...+. +. .+-+.. -.+....|.-|-++.+++
T Consensus 111 r~~~~~~~~~~~~eG~AIfyr~~-~f~ll--------~~~~i~ls~~~~~~s--~~~~~~-~~Ri~t~~nval~~~L~~~ 178 (398)
T 3ngq_A 111 RAKIMSEQERKHVDGCAIFFKTE-KFTLV--------QKHTVEFNQVAMANS--DGSEAM-LNRVMTKDNIGVAVVLEVH 178 (398)
T ss_dssp TTSCCCHHHHHTCEEEEEEEETT-TEEEE--------EEEEEEHHHHHHHTC--TTCHHH-HHTTTTCCCEEEEEEEEEC
T ss_pred CccccccccccCcceeEEEEECC-cceEE--------eeeEEecCCCccccc--ccchhh-hcceeeccceeEEEEEEEc
Confidence 100 00123568999999973 33221 111111110000 00 000000 001111233333333432
Q ss_pred ----------------ceEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-------------cCCeEEEeCCC
Q 006804 138 ----------------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-------------QGRRIFVVGDL 188 (630)
Q Consensus 138 ----------------~~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~-------------~g~pVII~GDF 188 (630)
..|.|+|+|+-...... ..|+.+...|.+.++++.. ...||||||||
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~----~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDF 254 (398)
T 3ngq_A 179 KELFGAGMKPIHAADKQLLIVANAHMHWDPEYS----DVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADL 254 (398)
T ss_dssp GGGC-----------CCEEEEEEEECCCCTTCH----HHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEEC
T ss_pred ccccccccccccCCCCcEEEEEEeCcCCCCCCH----HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeC
Confidence 24899999997643322 3455555555566655532 24689999999
Q ss_pred CCCCCc
Q 006804 189 NIAPAA 194 (630)
Q Consensus 189 N~~~~~ 194 (630)
|..++.
T Consensus 255 Ns~P~s 260 (398)
T 3ngq_A 255 NSLPDS 260 (398)
T ss_dssp SCCTTS
T ss_pred CCCCCC
Confidence 998864
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.7e-17 Score=192.72 Aligned_cols=81 Identities=21% Similarity=0.406 Sum_probs=34.5
Q ss_pred CEEEEecccc--cc-------------ccchhhhHHHHHHhhcCCcEEEEecccccc-ccchhHHHhhcCCcEEEeeccc
Q 006804 1 MKIVTYNVNG--LR-------------QRVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRT 64 (630)
Q Consensus 1 mrIlSwNInG--lr-------------~~~~r~~~l~~~L~~l~aDIIcLQETk~~~-~~l~~~l~~~~GY~~~fs~~~~ 64 (630)
+++++|||.. +. ....|...|.++|..++||||||||+.... ..+....+...||.++|.....
T Consensus 395 ~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~~ 474 (727)
T 4b8c_D 395 FTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKAR 474 (727)
T ss_dssp -------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-----
T ss_pred eeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccCC
Confidence 4688999974 11 111233468999999999999999996421 1222234456789887743210
Q ss_pred C----CCCCCcceeEEEEEee
Q 006804 65 S----DKGRTGYSGVATFCRV 81 (630)
Q Consensus 65 ~----~~gr~GysGVAIlsR~ 81 (630)
. ..+..++.|||||+|.
T Consensus 475 ~~~~~~~~~~~~~G~AI~y~~ 495 (727)
T 4b8c_D 475 AKTMHSKDSKKVDGCCIFFKR 495 (727)
T ss_dssp -----------CCCCEEEC--
T ss_pred cccccccCCCCcccEEEEEEc
Confidence 0 0112345799999765
No 25
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.58 E-value=1.5e-14 Score=146.52 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=78.1
Q ss_pred CEEEEeccccccccchhhhHHHHHHhhc--CCcEEEEeccccccc-cch---hHHHh--hcCCcEEEeecccCCCCC-Cc
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF--DADIICFQETKLRRQ-ELK---SDLVM--ADGYESFFSCTRTSDKGR-TG 71 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~l--~aDIIcLQETk~~~~-~l~---~~l~~--~~GY~~~fs~~~~~~~gr-~G 71 (630)
|||+||||+.+.....+...+.+.|.+. +||||||||+.-... .+. +.+.. ..+|..+.... .+. .+
T Consensus 1 lrv~s~NI~~~g~~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~----~~~~~~ 76 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEP----LGRNSY 76 (260)
T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCC----BCSSSC
T ss_pred CEEEEEehhhhCCCccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEccc----CCCCCC
Confidence 7999999986532111112244555543 899999999964311 121 11111 13477665432 121 12
Q ss_pred ceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEe-----cceEEEEEEe
Q 006804 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD-----HGHFILFNVY 146 (630)
Q Consensus 72 ysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~-----~~~~~LinVY 146 (630)
..++++++|.. .+....... +.. +....+ . .....+.+.+... ...|+|+++|
T Consensus 77 ~~~~~~ly~~~----------~v~~~~~~~-~~~---~~~~~~------~--~~~~R~p~~~~~~~~~~~g~~~~vi~~H 134 (260)
T 2a40_B 77 KERYLFLFRPN----------KVSVLDTYQ-YDD---GCESCG------N--DSFSREPAVVKFSSHSTKVKEFAIVALH 134 (260)
T ss_dssp CBEEEEEECTT----------TCEEEEEEE-CCT---TSTTTH------H--HHCSSCCEEEEEECTTSSSSEEEEEECC
T ss_pred cEEEEEEEcCc----------eeEecCcee-ccC---CCcCCC------C--CceeeCCEEEEEEeCCCCCceEEEEEec
Confidence 24689999873 121111110 000 000000 0 0111222333332 3479999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHH--hcCCeEEEeCCCCCCCC
Q 006804 147 GPRADSEDTVRIQFKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPA 193 (630)
Q Consensus 147 ~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~--~~g~pVII~GDFN~~~~ 193 (630)
++.... . . ..+.|...++.+. ....++||+||||..+.
T Consensus 135 l~~~~~---~--~----q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 135 SAPSDA---V--A----EINSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp CCGGGH---H--H----HHHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred CCCCCc---H--H----HHHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 986431 1 1 1333444443332 24579999999998654
No 26
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.54 E-value=3.4e-14 Score=142.95 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=86.3
Q ss_pred CEEEEeccccccccchh-h-hHHHHHHhhcC-CcEEEEeccccc--------c---c-cc-hhHHHhhcC------CcEE
Q 006804 1 MKIVTYNVNGLRQRVSQ-F-GSLRKLLDSFD-ADIICFQETKLR--------R---Q-EL-KSDLVMADG------YESF 58 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r-~-~~l~~~L~~l~-aDIIcLQETk~~--------~---~-~l-~~~l~~~~G------Y~~~ 58 (630)
+||+|||++|-...... + ..+.++|...+ +|||+|||+-.. + . .. ..+++...| +.++
T Consensus 16 ~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~~~yi 95 (262)
T 2f1n_A 16 FRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYI 95 (262)
T ss_dssp CCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCEEEE
T ss_pred eEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCceEEE
Confidence 58999999996542221 1 24888999988 999999998622 1 0 00 011222333 6554
Q ss_pred EeecccCCCCCCcceeEEEEEeecCCCCCcccccceeeeecccccccccCcccccCcccccchhhcccCCCCcEEEEecc
Q 006804 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG 138 (630)
Q Consensus 59 fs~~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~~eegl~g~~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~ 138 (630)
|..... .+ .++.|+||++|.+. . +.+. +.. + . .....++.+..+
T Consensus 96 Y~~~~D--~~-~~r~nlAIlSr~~a-----------d--ev~v-Lp~---~---------------~-~~~Rp~lgiri~ 139 (262)
T 2f1n_A 96 YFSAVD--AL-GGRVNLALVSNRRA-----------D--EVFV-LSP---V---------------R-QGGRPLLGIRIG 139 (262)
T ss_dssp EEECSC--SS-SCSSCEEEEESSCC-----------S--EEEE-ECC---S---------------S-TTCCCEEEEEET
T ss_pred EEeecc--CC-CCceeeEEEEcccc-----------c--ceEE-CCC---C---------------C-CCCCceEEEEEC
Confidence 444322 22 34569999999842 2 1110 110 0 0 113345567778
Q ss_pred eEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC-----CeEEEeCCCCCCCCc
Q 006804 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-----RRIFVVGDLNIAPAA 194 (630)
Q Consensus 139 ~~~LinVY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~g-----~pVII~GDFN~~~~~ 194 (630)
.++++|+|+-+.+. .++. ...+.+.+++.. ... .++||+||||..|+.
T Consensus 140 ~~~ff~tHa~a~~g--~da~----a~v~~I~~~~~~--~~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 140 NDAFFTAHAIAMRN--NDAP----ALVEEVYNFFRD--SRDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp TEEEEEEECCSSSS--CSHH----HHHHHHHHHHHT--CSSHHHHTCEEEEEEECSSCHHH
T ss_pred CEEEEEEEecCCCC--ccHH----HHHHHHHHHHhc--CcccccCCCcEEEEecCCCCCcc
Confidence 89999999987643 2332 223333333332 122 499999999987665
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.51 E-value=2.9e-13 Score=137.38 Aligned_cols=40 Identities=33% Similarity=0.506 Sum_probs=30.3
Q ss_pred CEEEEeccccccccc-hhhh-HHHHHHhh-cCCcEEEEecccc
Q 006804 1 MKIVTYNVNGLRQRV-SQFG-SLRKLLDS-FDADIICFQETKL 40 (630)
Q Consensus 1 mrIlSwNInGlr~~~-~r~~-~l~~~L~~-l~aDIIcLQETk~ 40 (630)
+||+||||+|-...- .++. .+.++|.. .++||++|||+..
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~ 47 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGS 47 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCS
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCC
Confidence 689999999843311 1222 48999999 8899999999864
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.35 E-value=1.9e-11 Score=129.72 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=26.7
Q ss_pred CEEEEeccccccccchhhhHHHHHHhh---cCCcE--EEEecc
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS---FDADI--ICFQET 38 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~---l~aDI--IcLQET 38 (630)
+.|+||||+|.... . .|.++|.. ..||| |||||+
T Consensus 27 i~v~TwNv~g~~~~-~---~l~~~L~~~~~~~~DI~viglQEi 65 (347)
T 1i9z_A 27 IFVASYNLNGCSAT-T---KLENWLFPENTPLADIYVVGFQEI 65 (347)
T ss_dssp EEEEEEECTTCCCC-S---CCHHHHSCSSSCCCSEEEEEEECS
T ss_pred EEEEeEecCCCCCc-h---hHHHHhccccCCCCCEEEEEeEEe
Confidence 47899999997642 1 27888874 67999 899997
No 29
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.32 E-value=5.3e-12 Score=130.35 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=25.9
Q ss_pred CEEEEeccccccccchhhhHHHHHHh---hcCCcE--EEEeccccc
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLD---SFDADI--ICFQETKLR 41 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~---~l~aDI--IcLQETk~~ 41 (630)
|+|+||||++.... . .+.+++. ..+||| |||||+...
T Consensus 9 i~V~T~Nv~~~~~~-~---~l~~wl~~~~~~~pDI~viglQEv~~~ 50 (282)
T 2imq_X 9 VHTVSWNSGHERAP-T---NLEELLGLNSGETPDVIAVAVQGFGFQ 50 (282)
T ss_dssp EEEEEEEEETCCCC-S---CCHHHHTCTTSCCCSEEEEEEEESCTT
T ss_pred EEEEEEeCCCCcCc-h---hHHHHhcccccCCCCEEEEEeeeeccc
Confidence 58999999876432 1 1444554 688996 599999654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.25 E-value=1.9e-10 Score=122.37 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=44.0
Q ss_pred CEEEEeccccccccchhhhHHHHHHh----hcCCcE--EEEeccccccccchhHHHhhcCCcEEEeecccCCCCCCccee
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLD----SFDADI--ICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSG 74 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~----~l~aDI--IcLQETk~~~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysG 74 (630)
|.|+||||+|.+..... |.++|. ...||| |+|||+...+....+.+....|..+.+..+. .-+..+
T Consensus 28 i~v~TwNv~g~~~~~~~---L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s~-----~l~g~~ 99 (357)
T 2xsw_A 28 LFVATWNMQGQKELPPS---LDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSA-----AHGVLY 99 (357)
T ss_dssp EEEEEEECTTCSSCCSC---CHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEEE-----EETTEE
T ss_pred EEEEEEecCCCCCCccc---HHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhhh-----hhhhEE
Confidence 57899999997543332 555553 357896 8899997654333333333344443332221 123358
Q ss_pred EEEEEeec
Q 006804 75 VATFCRVK 82 (630)
Q Consensus 75 VAIlsR~~ 82 (630)
++||+|..
T Consensus 100 l~Vfvr~~ 107 (357)
T 2xsw_A 100 MSLFIRRD 107 (357)
T ss_dssp EEEEEEGG
T ss_pred EEEEEchH
Confidence 99999984
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.90 E-value=3.3e-08 Score=102.95 Aligned_cols=37 Identities=38% Similarity=0.477 Sum_probs=28.7
Q ss_pred CEEEEeccccccccchhhhHHHHHHhh--cCCc--EEEEeccccc
Q 006804 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS--FDAD--IICFQETKLR 41 (630)
Q Consensus 1 mrIlSwNInGlr~~~~r~~~l~~~L~~--l~aD--IIcLQETk~~ 41 (630)
|.|.||||||.+.+ . .|.++|.. ..|| ||+|||+.+.
T Consensus 10 i~v~TwNvng~~~~-~---~l~~wL~~~~~~pDI~viGlQE~~l~ 50 (313)
T 3mtc_A 10 FFAGTYNVNGQSPK-E---CLRLWLSNGIQAPDVYCVGFQELDLS 50 (313)
T ss_dssp EEEEEEECTTCCCC-S---CTHHHHSSSCCCCSEEEEEEECSCCS
T ss_pred EEEEEEEcCCccCc-h---hHHHHhcccCCCCCeEEEEEEecccc
Confidence 35789999998653 2 37888875 6799 7999999764
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.65 E-value=5.5e-07 Score=93.92 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=40.5
Q ss_pred EEEEeccccccccchhhhHHHHHHhh-------------cCCcEE--EEeccccccccchhHH---Hh---hcCCcEEEe
Q 006804 2 KIVTYNVNGLRQRVSQFGSLRKLLDS-------------FDADII--CFQETKLRRQELKSDL---VM---ADGYESFFS 60 (630)
Q Consensus 2 rIlSwNInGlr~~~~r~~~l~~~L~~-------------l~aDII--cLQETk~~~~~l~~~l---~~---~~GY~~~fs 60 (630)
-|.||||||...+ . .|.++|.- ..+||+ +|||.-.......+.+ +. ...|..+.+
T Consensus 11 ~vgTwNv~g~~p~-~---~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s 86 (316)
T 4a9c_A 11 FIGTWNMGSVPPP-K---NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAM 86 (316)
T ss_dssp EEEEEECTTSCCC-S---CCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEeEcCCcCCC-c---chhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEe
Confidence 5789999996433 2 26777652 347876 8899854332222211 11 135665554
Q ss_pred ecccCCCCCCcceeEEEEEeec
Q 006804 61 CTRTSDKGRTGYSGVATFCRVK 82 (630)
Q Consensus 61 ~~~~~~~gr~GysGVAIlsR~~ 82 (630)
.. -+.-.++||+|..
T Consensus 87 ~~-------L~gi~l~Vfvk~~ 101 (316)
T 4a9c_A 87 QS-------LWNIKVAVLVKPE 101 (316)
T ss_dssp EE-------ETTEEEEEEECGG
T ss_pred ee-------ehheeeeeEEeHH
Confidence 32 2334788898874
No 33
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=82.41 E-value=0.82 Score=32.11 Aligned_cols=35 Identities=34% Similarity=0.898 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCceeeEecCCCCCCCeeeeeccCCCCCCCCCCCCCCcee
Q 006804 573 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 621 (630)
Q Consensus 573 ~~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~ 621 (630)
..|.|. -||.|..| | |+-.||. |.=|+| ..||||+
T Consensus 3 ~~P~Cd-~GeqCAvR---k-G~Rigkl---C~C~rg------~~Cn~fl 37 (41)
T 1hy9_A 3 QVPMCD-AGEQCAVR---K-GARIGKL---CDCPRG------TSCNSFL 37 (41)
T ss_dssp CCCBCC-SSSCSEEE---C-SSSEEEC---CBCCTT------CCBCTTT
T ss_pred cCCcCC-ccchhhhh---c-ccccchh---cCCCCC------Ccchhhh
Confidence 479999 99999765 4 8888874 444434 7899996
No 34
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=29.01 E-value=13 Score=23.38 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=10.0
Q ss_pred cCccccccccccC
Q 006804 464 LGQLSLKSFFHKR 476 (630)
Q Consensus 464 ~~q~~l~~fF~~~ 476 (630)
.|-.+|-+||++=
T Consensus 7 ~g~~TLesFFK~L 19 (26)
T 2zvk_U 7 EGMQTLESFFKPL 19 (26)
T ss_pred cccccHHHHhccC
Confidence 3445999999984
No 35
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=23.62 E-value=18 Score=40.94 Aligned_cols=23 Identities=0% Similarity=-0.577 Sum_probs=9.0
Q ss_pred CCCeeeeeccCCCCCCCCCCCCCCceeeccC
Q 006804 595 TFGRRFFVCARAEGPASNPEANCGYFKWAFS 625 (630)
Q Consensus 595 n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~ 625 (630)
..|+.||.|.. -+ .|+|..|...
T Consensus 589 k~G~~f~gCs~------yp--~C~f~~~~~p 611 (633)
T 2gai_A 589 DEIAVIDDGKI------FL--GRKDSESGSP 611 (633)
T ss_dssp TSBCEEETTEE------EC------------
T ss_pred cCCCeEEeCCC------Cc--CCCCeecCCc
Confidence 45788999974 12 4999999763
Done!