BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006805
(630 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55G83|ABKC_DICDI Probable serine/threonine-protein kinase abkC OS=Dictyostelium
discoideum GN=abkC PE=3 SV=1
Length = 689
Score = 300 bits (769), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/494 (35%), Positives = 261/494 (52%), Gaps = 71/494 (14%)
Query: 179 VECVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWA 238
+ V + +R L LG++ PS++ P F P +ELW ++L T++ +G +IK+GQW
Sbjct: 151 INLVKIGIRVLELGLILLPSVLTFPCC--FIPGVKELWWQLLLETIQFSGTCWIKFGQWI 208
Query: 239 ATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAF-GRRLSEIFDGFEEAPVASGSI 297
+TRPDLFP L +K S+LHS+ P HSF +T ++IE +F G+ + ++F F+E P+ASGS+
Sbjct: 209 STRPDLFPDLLIEKFSQLHSQCPSHSFQFTNESIENSFNGKSIKDLFLWFDEEPMASGSV 268
Query: 298 AQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRL 357
AQVH+A G+ V VKV HP V +I+RDF II S IP +KWL L
Sbjct: 269 AQVHKA---LTMDGK-----VAVVKVLHPNVKSNIKRDFFIIYSLIWAFSHIPEMKWLSL 320
Query: 358 DESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGE 417
ES+ +F MM Q DL EA+HL+RF NF+ +V FPKP+YPLV VLVE++E G
Sbjct: 321 PESILEFGKSMMKQADLELEASHLNRFNSNFKYNSEVIFPKPLYPLVSKEVLVESFEPGS 380
Query: 418 CVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQK---KSSQ 474
+ ++ + H LA IG A ++M+LVDNF+HAD+HPGN+LVR + KS
Sbjct: 381 PIMDFIKKNDHH---NPTLAKIGLSAYMQMMLVDNFVHADLHPGNVLVRTSDDDNFKSID 437
Query: 475 KRLFR----------------------------------------------------SKP 482
F+ S P
Sbjct: 438 NNYFKKYNNDNDQQQQQQYNLPFKRKLYDTIEKSHKKFDSMLGGIQLKSIDFKEHQKSSP 497
Query: 483 HVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKA--FIEE 540
+IFLDVG+ +L + D+ + +E F + +G+ AE +R +++ C + F E
Sbjct: 498 KLIFLDVGLVTQLGQQDKDHFIELFTEIVNGNGKEGAELLIRYAREAKCTEEEMYQFKER 557
Query: 541 VDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLEGWQRKLDPG 600
+ F + VH + M ++L VR + V ++ N T+++ T+VLEG ++LDP
Sbjct: 558 MGTLFNQVQNSKLSEVHVGQFMSEILGLVREYHVKIESNFATLVMGTIVLEGLGKQLDPS 617
Query: 601 YNVMDTLQTLLLKA 614
++ LLK+
Sbjct: 618 LGLLKAAIPFLLKS 631
>sp|Q02981|YP109_YEAST ABC1 family protein YPL109C, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YPL109C PE=1
SV=2
Length = 657
Score = 235 bits (599), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/497 (29%), Positives = 243/497 (48%), Gaps = 76/497 (15%)
Query: 177 SLVECVILLMRALYLGVLFSPSIMMAPFADSFGPQFR------------ELWLHVVLRTL 224
++VE V ++R L + +F P +++ P + FG + + +W ++ + L
Sbjct: 111 NIVEPVCTILRFLEISAIFLPLLLLYPIS-WFGHKLKITDTNITETRGSLIWCQLLRKAL 169
Query: 225 ETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFG-RRLSEI 283
E AGP+FIK GQWA +R D+F LC +L +LHS HS ++T + + +A ++ +
Sbjct: 170 ELAGPSFIKLGQWAGSRTDIFSHALCHELGKLHSNVTAHSLSFTLEKLSQALKVDKIEDA 229
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVV--------AVKVRHPGVGESIRRD 335
FD F P+ GSIAQV+ L +Y K I + A+K+ HP V IRRD
Sbjct: 230 FDEFNRTPIGVGSIAQVYVGELSQKYI-DKYDNIQIGKDGNRWCAIKILHPNVRSQIRRD 288
Query: 336 FVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVS 395
I+ A + IP ++WL L V QF++ M Q+DL EA +L RF NF+ V
Sbjct: 289 LKIMKFCADAINWIPTMEWLSLPSEVDQFSILMNIQLDLRIEALNLERFNENFKNSIQVK 348
Query: 396 FPKPVYPLVHPAVLVETYEQGECVSRYVDELQ--GHERLKSALAHIGTHALLKMLLVDNF 453
FPKP PL + V+ E + G + +++ + L ++ A L+ML++D+F
Sbjct: 349 FPKPFLPLSNRDVMFEEHVYGLSMEKFLSTKKQINDVELCKKVSDPFVDAFLQMLILDDF 408
Query: 454 IHADMHPGNILVRVAQK-------------------------KSSQKRLFRSK------- 481
+HAD+HPGN+++R + + Q + F K
Sbjct: 409 VHADLHPGNVIIRFVKTNKYGTNIISSELESYRITHDLRKKIEEDQDQDFVGKLKSVLTN 468
Query: 482 --PHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKAFIE 539
P + F+D G+ EL++ +R+N + F A+AR DG A E + S+ P+ I+
Sbjct: 469 YTPQICFIDTGIITELNEKNRINFIALFNALARFDGYRAGELMIERSR-----TPETAID 523
Query: 540 EVDEAFAFWGTPEGDLVHP----------AECMQQLLEKVRRHRVNVDGNVCTVMVTTLV 589
+ E FAF D V + + Q+L VR H V ++ + +V+V L+
Sbjct: 524 K--EVFAFKVEKLVDKVKQRTFTLGTVSIGDLLDQMLSMVRSHHVRMESDFVSVVVAILL 581
Query: 590 LEGWQRKLDPGYNVMDT 606
LEG R+LDP ++ ++
Sbjct: 582 LEGIGRQLDPNLDLFES 598
>sp|Q9P7M0|YOS3_SCHPO ABC1 family protein C21C3.03, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC21C3.03 PE=3 SV=2
Length = 692
Score = 229 bits (584), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 152/505 (30%), Positives = 237/505 (46%), Gaps = 69/505 (13%)
Query: 184 LLMRALYLGVLFSPSIMMAPFA--------DSFGPQFRELWLHVVLRTLETAGPAFIKWG 235
+L+R+ L ++FSP I+ PF S +WL ++ LE AG FIK G
Sbjct: 154 ILLRSFNLFIIFSPIIITLPFIALISFLHLRSLSSLTVSIWLRFLVTQLERAGATFIKLG 213
Query: 236 QWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFG-RRLSEIFDGFEEAPVAS 294
QWAA+R DLFP CK LS+LHS HS AYT+ I + + + EIF F P+
Sbjct: 214 QWAASRTDLFPPAFCKTLSKLHSHVTPHSLAYTQSVICKTYKVESIEEIFVNFNPIPIGV 273
Query: 295 GSIAQVHRASLR-------------------FRYPGQKVKPIV--VAVKVRHPGVGESIR 333
G+IAQV+ A+++ FR P+ VA+KV HP V + I
Sbjct: 274 GAIAQVYTATIKKAATQQDNSYFTSMLQSIGFRQKNISDAPVTQDVAIKVLHPNVEKYIS 333
Query: 334 RDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKD 393
D I+ AK+ +++P++KWL L + V+ F + Q++L EA HL++F NFR +
Sbjct: 334 LDLQILGFFAKLINLVPSMKWLSLPDEVKVFGAMLNQQLNLHYEALHLNQFRLNFRGNRY 393
Query: 394 VSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNF 453
V FP P +L+E Y G +S ++ G LA+ G +AL +ML+VDNF
Sbjct: 394 VEFPAPYDDYTTNQILLEDYMPGIPLSAFLKHKSG--PFNKLLANTGNNALFQMLIVDNF 451
Query: 454 IHADMHPGNILVRVAQKKSSQKRLFRS--------------------------------K 481
HAD+HPGN+LV+ K K +F +
Sbjct: 452 THADLHPGNVLVKFY--KGIPKTIFNQDNEINDSIYKILSTCSTEEWDSAMEELNILGYR 509
Query: 482 PHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQ-QNCPNPKAFIEE 540
P ++FLD G+ +LS D+ N ++ F+AV G A + S+Q + N F +
Sbjct: 510 PTLVFLDAGLVTKLSTQDQKNFLDLFQAVLTFHGYEAGLLMVERSRQTERVINKDIFALK 569
Query: 541 VDEAFAFWGTPEGDL--VHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLEGWQRKLD 598
++ L + +Q+++ R H V ++ N +++ L++EG R+L
Sbjct: 570 MEHLLNEIQKSTLSLKSLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAGRQLY 629
Query: 599 PGYNVMDTLQTLLLKADWAKSLSYT 623
P +++ L A ++S T
Sbjct: 630 PEMDLLSNATPYLRSASSKSNVSLT 654
>sp|Q7Z695|ADCK2_HUMAN Uncharacterized aarF domain-containing protein kinase 2 OS=Homo
sapiens GN=ADCK2 PE=2 SV=1
Length = 626
Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 173/339 (51%), Gaps = 21/339 (6%)
Query: 295 GSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKW 354
GS A V RA + P + I VAVKV HPG+ + D +++ + +++ V+P +KW
Sbjct: 285 GSNAGVSRAQVPGHQP-EATNLISVAVKVLHPGLLAQVHMDLLLMKIGSRVLGVLPGIKW 343
Query: 355 LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYE 414
L L E V++F M+ Q+DL EA +L F NFR K V FP P+ P V VLVETYE
Sbjct: 344 LSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYE 403
Query: 415 QGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQ 474
+ VS Y + LK +A +G + LLKM+ VDNF+HAD+HPGNILV+ A SS
Sbjct: 404 ESVPVSSY-QQAGIPVDLKRKIARLGINMLLKMIFVDNFVHADLHPGNILVQGANGLSSS 462
Query: 475 KR-----------LFRSKP------HVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRT 517
+ L + P ++ LD G+ AEL D N F AV G+
Sbjct: 463 QEAQLQQADICDTLVVAVPSSLCPLRLVLLDAGIVAELQAPDLRNFRAVFMAVVMGQGQR 522
Query: 518 AAECTLRLSKQQNCPNPKAFIEEVDEAF--AFWGTPEGDLVHPAECMQQLLEKVRRHRVN 575
AE L ++ C + + F E+ A T + +H + + + + + H+V
Sbjct: 523 VAELILHHARASECRDVEGFKTEMAMLVTQARKNTITLEKLHVSSLLSSVFKLLMTHKVK 582
Query: 576 VDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLKA 614
++ N +++ +VLEG R LDP ++++ + LL
Sbjct: 583 LESNFASIVFAIMVLEGLGRSLDPKLDILEAARPFLLTG 621
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 210 PQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTK 269
P LWLH++L+ ET+GP +IK GQWA+TR DLF C + S+LH + H + +T+
Sbjct: 124 PSVSTLWLHLLLKATETSGPTYIKLGQWASTRRDLFSEAFCAQFSKLHVRVTPHPWTHTE 183
Query: 270 KTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRA 303
+ + +AFG I PV SG +AQV++A
Sbjct: 184 RFLRQAFGDDWGSILSFENREPVGSGCVAQVYKA 217
>sp|Q6NSR3|ADCK2_MOUSE Uncharacterized aarF domain-containing protein kinase 2 OS=Mus
musculus GN=Adck2 PE=2 SV=1
Length = 617
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 164/319 (51%), Gaps = 24/319 (7%)
Query: 317 IVVAVKVRHPGVGESIRRDFVIINLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAR 376
I VAVKV HPG+ + D +++ + +K ++P VKWL L E V++F M+ Q DL
Sbjct: 297 IPVAVKVLHPGLLSQVSMDLLLMKIGSKALGLLPGVKWLSLPEIVEEFEKLMVQQTDLRY 356
Query: 377 EAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSAL 436
EA +L F +NF+ V FP P+ PL+ +LVETYE+ VS Y + LK +
Sbjct: 357 EAQNLEHFQHNFQDMASVKFPTPLRPLITRDILVETYEESVPVSSY-QQAGIPTDLKRKI 415
Query: 437 AHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHV------------ 484
A +G + LLKM+ VDNF+H D+HPGNILV+ A S + + + +V
Sbjct: 416 AQLGINMLLKMIFVDNFVHGDLHPGNILVQGADGVSPSLEMQQQQVNVCDTLVATIAPAL 475
Query: 485 -----IFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKAFIE 539
+ LD G+ A+L +D N F+AV G AE L ++ C + + F
Sbjct: 476 CPLRLVLLDAGIVAKLQASDLRNFRAVFQAVVMGQGHRVAELMLHHAQANECRDVERFKA 535
Query: 540 E----VDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLEGWQR 595
E V +A T E +H + + + + + H+V ++ N +++V +VLEG R
Sbjct: 536 EMATLVTQARKNIVTLEK--LHVSSLLSSVFKLLMTHKVKLESNFASIVVAIMVLEGLGR 593
Query: 596 KLDPGYNVMDTLQTLLLKA 614
LDP ++++ + L K
Sbjct: 594 SLDPTLDILEAAKPFLFKG 612
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 181 CVILLMRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAAT 240
C+ L +RA L F P + + P P LWLH++ + ET+GP +IK GQWA+T
Sbjct: 96 CLRLGLRAGVLLAKFFPLLFLYPLT-YLAPGLSTLWLHLLFKATETSGPTYIKLGQWAST 154
Query: 241 RPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQV 300
R DLF C + S+LH + H +A T+ +++AFG + PV SG +AQV
Sbjct: 155 RRDLFSEAFCTQFSKLHVQVTPHPWARTEYLLQQAFGEDWGSLLFFETREPVGSGCVAQV 214
Query: 301 HRA 303
++A
Sbjct: 215 YKA 217
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 191/402 (47%), Gaps = 35/402 (8%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP F+K+GQ +TR DL P D+ +L+ L + P TIERAF R + E
Sbjct: 56 ALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRPVGE 115
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIIN-L 341
+F FE PVAS SIAQVH A +R R+ ++ VAVKV PG+ I D ++ +
Sbjct: 116 VFVSFERVPVASASIAQVHFAIVRDRHGVER----EVAVKVLRPGMLPVIDNDLGLMRAM 171
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + S+ K L+ + V +F ++ ++DL REAA+ ++ N R V P+ ++
Sbjct: 172 AGWVESLSADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEILW 231
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSA------LAHIGTHALLKMLLVDNFIH 455
HP VLV +G +S+ ERL++A LA G + D F H
Sbjct: 232 DFCHPEVLVMERMKGVPISQI-------ERLRAAGVDIRQLARDGVTIFFTQVFRDGFFH 284
Query: 456 ADMHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDG 515
ADMHPGNI +V+ + S R I LD G+ L++ D+ L + F A RRD
Sbjct: 285 ADMHPGNI--QVSLEPGSFGR-------YISLDFGIVGSLTEFDKEYLAQNFTAFFRRDY 335
Query: 516 RTAAECTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRR 571
+ AE L + I E++ A P D + + +L + RR
Sbjct: 336 KRVAE----LHVESGWVPADTRINELESAIRAVCEPYFDRPLKEISLGMVLMRLFQTSRR 391
Query: 572 HRVNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLK 613
V + + + T L +EG R+LDP ++ T + L K
Sbjct: 392 FHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWSTAKPFLEK 433
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 131/451 (29%), Positives = 204/451 (45%), Gaps = 41/451 (9%)
Query: 186 MRALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLR------------------TLETA 227
MR Y G+ + + F++ WL VV R LE
Sbjct: 1 MRRFYRGIFIVWVALRYGLDELVLTSFQKPWLRVVARIVSIGRNLDAPRGQRLREALERL 60
Query: 228 GPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGF 287
GP F+K+GQ +TR DL P D+ +L+ L + P A TIERAF R + ++F F
Sbjct: 61 GPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRPVGDVFVQF 120
Query: 288 EEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAAK-IS 346
+E P+AS SIAQVH A++R + + VAVKV P + I +D ++ + A +
Sbjct: 121 DETPIASASIAQVHFATIR----TDEGEVREVAVKVLRPSMRGVIEKDLALMAMMAGWVE 176
Query: 347 SVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHP 406
+ P K L+ E V +F ++ ++DL REAA+ ++ N + V P+ + HP
Sbjct: 177 KLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEMFWDFCHP 236
Query: 407 AVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVR 466
V+V G +++ +D L+ LA G + D F HADMHPGNI V
Sbjct: 237 EVIVMERMNGVPIAQ-LDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVS 295
Query: 467 VAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLS 526
+A + + I LD G+ L+++D+ L + F A RRD + AE L
Sbjct: 296 LAPETFGR---------YISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHL--- 343
Query: 527 KQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNVDGNVCT 582
+ I+E++ A P D + + +L + RR V + +
Sbjct: 344 -ESGWVPEGTRIDELEGAIRTVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVL 402
Query: 583 VMVTTLVLEGWQRKLDPGYNVMDTLQTLLLK 613
+ T L +EG R+LDP ++ T + L K
Sbjct: 403 LQKTLLNIEGLGRQLDPELDLWHTAKPFLEK 433
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 196/430 (45%), Gaps = 51/430 (11%)
Query: 212 FRELWLHVVLRT------------------LETAGPAFIKWGQWAATRPDLFPRDLCKKL 253
FR+ WL V R LE+ GP F+K+GQ +TR DL P D+ +L
Sbjct: 27 FRQPWLRAVTRVITFGRKLDAPRGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADEL 86
Query: 254 SELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQK 313
+ L + P TIERAF R + E+F F+ PVAS SIAQVH A +R R +
Sbjct: 87 ALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAR 146
Query: 314 VKPIVVAVKVRHPGVGESIRRDFVIINLAAK-ISSVIPAVKWLRLDESVQQFAVFMMSQV 372
VAVKV PG+ I +D ++ + A + S+ K L+ E V +F ++ ++
Sbjct: 147 ----EVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSADGKRLKPREVVAEFDNYLHDEL 202
Query: 373 DLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERL 432
DL REAA+ ++ N + V P+ + H VLV +G +++ ERL
Sbjct: 203 DLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQV-------ERL 255
Query: 433 KSA------LAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHVIF 486
+SA LA G + D F HADMHPGNI V +A + + I
Sbjct: 256 RSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGR---------YIS 306
Query: 487 LDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLR---LSKQQNCPNPKAFIEEVDE 543
LD G+ L++ D+ L + F A RRD + AE + + +A I V E
Sbjct: 307 LDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEAAIRTVCE 366
Query: 544 AFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLEGWQRKLDPGYNV 603
+ E L + +L + RR +V + + + T L +EG R+LDP ++
Sbjct: 367 PYFDRPLKEISL---GMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDL 423
Query: 604 MDTLQTLLLK 613
T + L K
Sbjct: 424 WSTAKPFLEK 433
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 194/424 (45%), Gaps = 39/424 (9%)
Query: 212 FRELWLHVVLRT------------------LETAGPAFIKWGQWAATRPDLFPRDLCKKL 253
FR+ WL V R LE+ GP F+K+GQ +TR DL P D+ +L
Sbjct: 27 FRQPWLRAVTRVITFGRKLDAPRGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADEL 86
Query: 254 SELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLRFRYPGQK 313
+ L + P TIERAF R + E+F F+ PVAS SIAQVH A +R R +
Sbjct: 87 ALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAR 146
Query: 314 VKPIVVAVKVRHPGVGESIRRDFVIINLAAK-ISSVIPAVKWLRLDESVQQFAVFMMSQV 372
VAVKV PG+ I +D ++ + A + S+ K L+ E V +F ++ ++
Sbjct: 147 ----EVAVKVLRPGMLPVIDKDLALMRMMAGWVESLSADGKRLKPREVVAEFDNYLHDEL 202
Query: 373 DLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDELQGHERL 432
DL REAA+ ++ N + V P+ + H VLV +G +++ VD L+
Sbjct: 203 DLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQ-VDRLRSAGVD 261
Query: 433 KSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMT 492
LA G + D F HADMHPGNI V +A + + I LD G+
Sbjct: 262 IPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGR---------YISLDFGIV 312
Query: 493 AELSKTDRVNLVEFFKAVARRDGRTAAECTLR---LSKQQNCPNPKAFIEEVDEAFAFWG 549
L++ D+ L + F A RRD + AE + + +A I V E +
Sbjct: 313 GTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEAAIRTVCEPYFDRP 372
Query: 550 TPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQT 609
E L + +L + RR +V + + + T L +EG R+LDP ++ T +
Sbjct: 373 LKEISL---GMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWSTAKP 429
Query: 610 LLLK 613
L K
Sbjct: 430 FLEK 433
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/401 (30%), Positives = 189/401 (47%), Gaps = 35/401 (8%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
LE GP F+K+GQ +TR DL P D+ ++L+ L + P TIERAF ++L +I
Sbjct: 57 LEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAFRKKLDQI 116
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA 343
F FE PVAS SIAQVH A + R Q+ VAVKV PG+ I +D ++++ A
Sbjct: 117 FVSFEREPVASASIAQVHFAVISDRNGVQR----DVAVKVLRPGMKTVIDKDLALMHMMA 172
Query: 344 K-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ + + K L+ + V +F ++ ++DL REA++ ++ N V P+ +
Sbjct: 173 RWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPEVYWD 232
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSA------LAHIGTHALLKMLLVDNFIHA 456
V+V G +S+ ERL+ A LA G + D F HA
Sbjct: 233 FCRSDVMVMQRMTGVPISQV-------ERLREAGVDIPKLARDGVTIFFTQVFRDGFFHA 285
Query: 457 DMHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGR 516
DMHPGNI+V + + + I LD G+ L++ D+ L + F A RRD +
Sbjct: 286 DMHPGNIMVSLEPETFGR---------YISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYK 336
Query: 517 TAAECTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRH 572
AE L + P ++E++ A P D + + +L + RR
Sbjct: 337 RVAE----LHIESGWVPPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRF 392
Query: 573 RVNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLK 613
+V + + + T L +EG R+LDP ++ T + L K
Sbjct: 393 QVEIQPQLVLLQKTLLNIEGLGRQLDPNLDLWSTAKPFLEK 433
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 186/395 (47%), Gaps = 25/395 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP F+K+GQ +TR DL P D+ +L++L + P +ER+ G+ LS
Sbjct: 56 ALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSLGKPLSA 115
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NL 341
+F F+ PVAS SIAQVH A+LR G VAVKV PG+ I D ++ ++
Sbjct: 116 LFHRFDHHPVASASIAQVHFATLR----GGPDDGREVAVKVLRPGMLPVIDSDLALMRDV 171
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + + K L+ E V +F ++ ++DL REAA+ S+ NF + + + P+ +
Sbjct: 172 ATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSELLLVPEVFW 231
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
V V G VS + DEL+ LA G + D F HADMHPG
Sbjct: 232 DWCTSEVFVMERMHGVRVS-HADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMHPG 290
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NILV VA + S I LD G+ LS+ D+ L + F A +RD A
Sbjct: 291 NILVSVAPE---------SLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVA-- 339
Query: 522 TLRLSKQQNCPNPKAFIEEVDEAF-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNV 576
L + + +EE++ A ++ P G+ + + +L + RR V V
Sbjct: 340 --LLHVESGWAPEETRVEELEGAIRACCEPYFDRPLGE-ISLGLVLMRLFQTSRRFNVEV 396
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+LDP ++ T + L
Sbjct: 397 QPQLVLLQKTLLNVEGLGRQLDPDLDLWKTAKPFL 431
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 184/395 (46%), Gaps = 23/395 (5%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 396 QPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 184/395 (46%), Gaps = 23/395 (5%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 396 QPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 184/395 (46%), Gaps = 23/395 (5%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 396 QPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 184/395 (46%), Gaps = 23/395 (5%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 396 QPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 184/395 (46%), Gaps = 23/395 (5%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 396 QPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 184/395 (46%), Gaps = 23/395 (5%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 396 QPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 184/395 (46%), Gaps = 23/395 (5%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 396 QPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 184/395 (46%), Gaps = 23/395 (5%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE+ GP F+K+GQ +TR DL P D +L++L + P A +E++ G R+
Sbjct: 54 RALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGARID 113
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-N 340
+FD FE PVAS SIAQVH A L+ G+ K VAVKV P + I D ++ +
Sbjct: 114 VLFDEFERVPVASASIAQVHFAKLK---QGEH-KGKAVAVKVLRPNMLPVIDSDLALMRD 169
Query: 341 LAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
+A + + L+ E V +F ++ ++DL REAA+ S+ NF + P+
Sbjct: 170 IATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMF 229
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ PAVLV G +S+ VD L+ LA G + D F HADMHP
Sbjct: 230 WDYSTPAVLVMERMTGVPISQ-VDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V + K + I LD G+ LS D+ L + F A +RD A
Sbjct: 289 GNIQVSLDPKHFGR---------YIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVA- 338
Query: 521 CTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNV 576
TL L P+ + +EE++ A P D + + + +L RR V +
Sbjct: 339 -TLHLESGWVPPDTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEI 395
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 396 QPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 181/395 (45%), Gaps = 29/395 (7%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE+ GP FIK+GQ +TRPDL P D +L++L K P +++ IE++ G+ + +
Sbjct: 57 ALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQSIEK 116
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
++ FE P+AS SIAQVH+A L + G++ VAVKV P + I +D ++
Sbjct: 117 LYAEFETEPIASASIAQVHKARL---HSGEQ-----VAVKVLRPNLLPVIEQDLSLMRFG 168
Query: 343 AK-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + + K L+ E V +F ++ ++DL REAA+ S+ NF+ + PK Y
Sbjct: 169 AGWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFY 228
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
VL + G VS + +L+ LA G + D F HADMHPG
Sbjct: 229 DYCTSDVLTIEWMDGTPVSD-IAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPG 287
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NILV + I LD G+ L+ D+ L F A RD R A
Sbjct: 288 NILVAADNR-------------YIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATA 334
Query: 522 TLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDG 578
+ + +A + V E + P + + +L E RR V +
Sbjct: 335 HIESGWVPADTRAEELEAAVRAVCE--PVFNKPISQISF-GLVLMRLFEVSRRFNVEIQP 391
Query: 579 NVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLK 613
+ + T L +EG R+LDP ++ T + L+K
Sbjct: 392 QLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVK 426
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 187/402 (46%), Gaps = 27/402 (6%)
Query: 222 RTLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLS 281
R LE GP F+K+GQ +TR DL P DL +L L K P + + IE + +S
Sbjct: 57 RALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEESLKSPVS 116
Query: 282 EIFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINL 341
E+F F+ P+AS SIAQVH A+L+ G++ V VKV PG+ ++IR D ++ L
Sbjct: 117 ELFADFQTYPMASASIAQVHAATLK---NGKE-----VVVKVIRPGIEKTIRLDIALMLL 168
Query: 342 AAK-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPV 400
A+ + + K L E V+ + ++ ++DL REAA+ S+ NF + + P+
Sbjct: 169 VARLVENYWEDGKRLHPVEVVKDYEHTIIDELDLQREAANTSQLKRNFAGSELIYIPEVY 228
Query: 401 YPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHP 460
+ + H VLV G ++ V++L+ LA G + D+F HADMHP
Sbjct: 229 WEMTHSRVLVMERIYGVPIAD-VEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHP 287
Query: 461 GNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAE 520
GNI V V+ + P I +D G+ L+ D+ L A RRD R A
Sbjct: 288 GNIFVDVSNP---------ANPRYIAIDCGIVGTLTPEDQSYLARNLLAFFRRDYRQVAV 338
Query: 521 CTLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVD 577
+ + +A I V E + P D+ + + +L + RR + V
Sbjct: 339 LHISSGWVPGHTRVNEFEAAIRTVCE--PIFERPLKDISF-GQFLMRLFQTARRFDMEVQ 395
Query: 578 GNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLKADWAKS 619
+ + T L +EG R+L P ++ T Q L +W K
Sbjct: 396 PQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFL--ENWMKQ 435
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 182/394 (46%), Gaps = 27/394 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP F+K+GQ +TR DL P D+ +L++L + P ++ + ++ GR + E
Sbjct: 56 ALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRPIEE 115
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ PVAS SIAQVH L + G++ VAVKV P V I D ++ +A
Sbjct: 116 VFASFDADPVASASIAQVHFGVL---HDGRE-----VAVKVLRPNVLNIIEADLALLRVA 167
Query: 343 AK-ISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + + P + LR E V +F ++ ++DL REAA+ ++ N + P+ ++
Sbjct: 168 AAWLERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIW 227
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
L VLV G +S+ ++ L+ LA G + D F HADMHPG
Sbjct: 228 DLSSAEVLVMERMHGVPISQ-IETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPG 286
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI+V A + I LD G+ L D+ L + F A RRD R AE
Sbjct: 287 NIMVSTAPATFGR---------YIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAE- 336
Query: 522 TLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNVD 577
L + ++E++ A P D + + + +L + RR V +
Sbjct: 337 ---LHIESGWVPASTRVDELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTSRRFNVEIQ 393
Query: 578 GNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+LDP ++ T + L
Sbjct: 394 PQLVLLQKTLLNVEGLGRQLDPELDLWQTAKPFL 427
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 180/395 (45%), Gaps = 29/395 (7%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE+ GP FIK+GQ +TRPDL P D +L++L K P +++ IE++ G+ + +
Sbjct: 57 ALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQSIEK 116
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINL- 341
++ FE P+AS SIAQVH+A L + G++ VAVKV P + I +D ++
Sbjct: 117 LYAEFETEPIASASIAQVHKARL---HSGER-----VAVKVLRPNLLPLIEQDLSLMRFG 168
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
AA + + + L+ E V +F ++ ++DL REAA+ + NF + PK Y
Sbjct: 169 AAWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFY 228
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
VL + G V+ + +L+ LA G + D F HADMHPG
Sbjct: 229 DYCTSDVLTIEWMDGTPVAD-IAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPG 287
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NILV + I LD G+ L+ D+ L F A RD R A
Sbjct: 288 NILVAADNR-------------YIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATA 334
Query: 522 TLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDG 578
+ + +A + V E + P + + +L E RR V +
Sbjct: 335 HIESGWVPADTRAEELEAAVRAVCE--PVFNKPISQISF-GLVLMRLFEVSRRFNVEIQP 391
Query: 579 NVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLK 613
+ + T L +EG R+LDP ++ T + L+K
Sbjct: 392 QLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVK 426
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 180/394 (45%), Gaps = 23/394 (5%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE+ GP F+K+GQ +TR DL P D+ +L++L + P A + +E A G +
Sbjct: 55 ALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAPVDV 114
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NL 341
+FD FE PVAS SIAQVH A+++ GQ VAVKV P + I D ++ ++
Sbjct: 115 LFDDFERVPVASASIAQVHFATVK---AGQHAGK-AVAVKVLRPNMLPVIDSDLALLRDI 170
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + K L+ E V +F ++ ++DL REAA+ S+ NF + P+ +
Sbjct: 171 AVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYW 230
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
P VLV G +S+ V+ L+ LA G + D F HADMHPG
Sbjct: 231 EFCTPTVLVMERMVGVPISQ-VETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V + + I LD G+ LS D+ L + F A +RD A
Sbjct: 290 NIQVSLDPAHFGR---------YIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVA-- 338
Query: 522 TLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNVD 577
TL L P + +EE++ A P D + + + +L RR V +
Sbjct: 339 TLHLESGWVPPTTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQ 396
Query: 578 GNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 397 PQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 181/400 (45%), Gaps = 36/400 (9%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
LE+ GP F+K+GQ +TR DL P + +L+ L + P ++ +ER+ GR++ E+
Sbjct: 56 LESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEEL 115
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NLA 342
F F+ PVAS S+AQVH+A LR G+ + VAVKV PG+ I +D ++ LA
Sbjct: 116 FVDFDLKPVASASVAQVHKAWLRQPDGGRGRE---VAVKVLRPGILPVIEQDLSLMRTLA 172
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ + K L+ E V +F ++ ++D+ EAA+ S+ NF+ + P+ Y
Sbjct: 173 GWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYD 232
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSA------LAHIGTHALLKMLLVDNFIHA 456
VL + G V + ERL+ A L+ G + F HA
Sbjct: 233 YSSREVLTLEWMHGIPVGQI-------ERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHA 285
Query: 457 DMHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGR 516
DMHPGNI V + I LD G+ L+ TD+ L F A RD
Sbjct: 286 DMHPGNIFVAADGR-------------YIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYH 332
Query: 517 TAAECTLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHR 573
A + + + +A + V E + P ++ + +L E RR
Sbjct: 333 RVATAHIESGWVPRDTRAEELEAAVRTVCE--PIFEKPLSEISF-GMVLLRLFETSRRFN 389
Query: 574 VNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLK 613
V + + + T L +EG R+LDP ++ DT + L K
Sbjct: 390 VEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPFLTK 429
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 178/402 (44%), Gaps = 31/402 (7%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP F+K+GQ +TR DL P D+ + L +L + P + IE++ G +SE
Sbjct: 58 ALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAPVSE 117
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINL- 341
+F F P+AS S+AQVH A+L GQK V VKV PG+ + IR+D ++ L
Sbjct: 118 LFAEFSPDPMASASVAQVHAATLP---NGQK-----VVVKVLRPGIEKVIRQDLGLMYLM 169
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + K L E V + + ++DL REAA+ S+ NF + P +
Sbjct: 170 AGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENSPLIYIPFIDW 229
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
+VLV G ++ V L+ LA G + D+F HADMHPG
Sbjct: 230 DYTRKSVLVMERIHGIPIAD-VPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPG 288
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V V+ + P I +D G+ L+ D+ L A RRD R A+
Sbjct: 289 NIFVDVSNP---------ADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQ- 338
Query: 522 TLRLSKQQNCPNPKAFIEEVDEAF-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNV 576
L Q P+ + E + A + P D+ + +L + RR + V
Sbjct: 339 ---LHIQSGWVPPETRVNEFEAAIRTVCEPIFERPLKDISF-GHFLLRLFQTARRFNMEV 394
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLKADWAK 618
+ + T L +EG R+L P ++ T Q L DW +
Sbjct: 395 QPQLVLLQKTLLNVEGLGRQLYPDLDLWSTAQPFL--EDWMR 434
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 180/393 (45%), Gaps = 23/393 (5%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
LE+ GP F+K+GQ +TR DL P D+ +L++L + P A +E++ G + +
Sbjct: 56 LESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAPVDVL 115
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NLA 342
FD FE PVAS SIAQVH A+++ GQ VAVKV P + I D ++ ++A
Sbjct: 116 FDDFERVPVASASIAQVHFATVK---AGQHAGK-AVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ K L+ E V +F ++ ++DL REAA+ S+ NF + P+ +
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWE 231
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
P VLV G +S+ V+ L+ LA G + D F HADMHPGN
Sbjct: 232 FCTPTVLVMERMVGVPISQ-VETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V + + I LD G+ LS D+ L + F A +RD A T
Sbjct: 291 IQVSLDPAHFGR---------YIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVA--T 339
Query: 523 LRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNVDG 578
L L P + +EE++ A P D + + + +L RR V +
Sbjct: 340 LHLESGWVPPTTR--VEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQP 397
Query: 579 NVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 398 QLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q9CKD4|UBIB_PASMU Probable ubiquinone biosynthesis protein UbiB OS=Pasteurella
multocida (strain Pm70) GN=ubiB PE=3 SV=1
Length = 527
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 177/400 (44%), Gaps = 27/400 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK GQ +TR DLFP D+ +L+ L + + IE+A G L
Sbjct: 61 LQELGPVWIKLGQMLSTRRDLFPPDIADELALLQDQVDPFDGKIARAQIEKALGAPLETW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYP--GQKVKPIVVAVKVRHPGVGESIRRDFVIINL 341
FD F E +AS SIAQVH A + P ++ V +KV P + + I D ++L
Sbjct: 121 FDEFNETALASASIAQVHTAKFKQNAPHLENRLAGKEVVLKVLRPNIQQMINAD---LSL 177
Query: 342 AAKISSVIPAVKW----LRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFP 397
K++S IP +K LR E V+++ + ++DL RE A+ + NF + P
Sbjct: 178 MYKVASWIPRIKAEGRRLRPVEVVREYEKNLRDELDLRREMANAIQLRANFENSPMLYIP 237
Query: 398 KPVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHAD 457
+ H V+V G VS ++EL + LA G + D+F HAD
Sbjct: 238 EMYKQFCHQTVIVMERIYGIPVSN-IEELHANGTNMKLLAERGVQVFFTQVFRDSFFHAD 296
Query: 458 MHPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRT 517
MHPGNI V A P I +D G+ L+ D+ L E F A RD R
Sbjct: 297 MHPGNIFVNRAHP---------DDPQYIGIDCGIVGRLNDHDKRYLAESFVAFFNRDYRR 347
Query: 518 AAECTLR---LSKQQNCPN-PKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHR 573
AE + K N + +AF E + FA P ++ + L R +
Sbjct: 348 VAEMHVASGWTPKDTNIDDFEQAFREVCEPIFA---KPLSEISF-GHVLLNLFNVAREYN 403
Query: 574 VNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLK 613
+ V + + T L +EG R+L P ++ DT + L K
Sbjct: 404 MEVQPQLVLLQKTLLYIEGLGRQLYPQLDLWDTAKPFLQK 443
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 174/395 (44%), Gaps = 29/395 (7%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
E GP FIK+GQ +TR DL P DL ++L+ L + P ++ IE+A G+ +
Sbjct: 60 AFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQIEQALGQPIEA 119
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F++ P+AS S+AQVH A L K + +KV P + I D ++ L
Sbjct: 120 LFADFDQQPLASASVAQVHTARL-------KENNAEIVIKVIRPDIKPVINDDIRLMRLC 172
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
AKI + + LR E ++++ ++ +++L EAA+ + NF + P
Sbjct: 173 AKIVAFLIPNNRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSHLYVPLVYSD 232
Query: 403 LVHPAVLVETYEQGECVS-RYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
+VLV G VS R E G + LK LA G + D+F HADMHPG
Sbjct: 233 YCRESVLVMERIYGIPVSDRAALEANGTD-LK-LLAERGVEVFFTQVFRDSFFHADMHPG 290
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
N+ V P I +D G+ L++ D+ L E F A RD R AE
Sbjct: 291 NVFVSYEHPHD---------PQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAE- 340
Query: 522 TLRLSKQQNCPNPKAFIEEVDEAF-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNV 576
L Q P +EE + A + P ++ + + L RR ++V
Sbjct: 341 ---LHVQSGWVPPDTKVEEFESALRTVLEPIFAKPLAEISF-GQVLLNLFNTARRFNMHV 396
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R L P ++ T + L
Sbjct: 397 QPQLVLLQKTLLYIEGLGRHLYPQLDLWQTAKPFL 431
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 176/393 (44%), Gaps = 25/393 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L L + P + K IE G+++SE
Sbjct: 62 ALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQLGKKISE 121
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ P+AS S+AQVH A L+ G++ V VKV PG+ I +D + +
Sbjct: 122 VFSRFDVEPLASASVAQVHAAQLK---TGEE-----VVVKVIRPGLKPIIAQDLAWLFIL 173
Query: 343 AKISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A+ + + A + L + V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 174 ARAAEKVSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
P VLV G V+ +K LA G + D+F HADMHPG
Sbjct: 234 DWCRPKVLVMERIYGIQVTDLATLADQRTDMK-MLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V S P I +D G+ L+ D+ L A +RD R A+
Sbjct: 293 NIFVSTVNPWS---------PQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQL 343
Query: 522 TLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDG 578
+ + + +A I V E + P D+ + + +L + RR + V
Sbjct: 344 HIDSGWVPAETKLNEFEAAIRTVCE--PIFEKPLKDISF-GQVLMRLFQTARRFNMEVQP 400
Query: 579 NVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+L P ++ +T Q L
Sbjct: 401 QLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFL 433
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 186/424 (43%), Gaps = 37/424 (8%)
Query: 187 RALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFP 246
R L L F P I S G + R L+ GP F+K+GQ +TR DL P
Sbjct: 30 RWLRLAKPFVPRISAEIVEQSRGRRLR--------LALQELGPIFVKFGQILSTRRDLVP 81
Query: 247 RDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLR 306
+D+ +L L + + IE A G+ + F F+ P+AS SI+QVH A+L
Sbjct: 82 QDIGDELVMLQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLH 141
Query: 307 FRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NLAAKISSVIPAVKWLRLDESVQQFA 365
R V VKV P + I D ++ +LA + P +R E V +
Sbjct: 142 DRR--------AVVVKVLRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVAEIE 193
Query: 366 VFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECV-SRYVD 424
+ +++DL RE A+ S + D+ P+ ++ H A V T E+ + S +
Sbjct: 194 TTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWS--HTAERVLTLERMYGIPSDDIA 251
Query: 425 ELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHV 484
L + AL+ G + DNF HAD H GNI V S R +S P
Sbjct: 252 LLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWV-----DSDPAR--KSNPRF 304
Query: 485 IFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKAFIEEVDEA 544
I LD G+ +LS+ D+ L E F A+ +D R AE L + P IEE++ A
Sbjct: 305 IVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAE----LHVEAGWIPPHVRIEELEAA 360
Query: 545 F-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLEGWQRKLDP 599
++ P + AE M +L RR+++ + + + T L +EG R+LDP
Sbjct: 361 ARSVCEPYFTRPLSQ-ISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDP 419
Query: 600 GYNV 603
++
Sbjct: 420 ELDI 423
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 186/424 (43%), Gaps = 37/424 (8%)
Query: 187 RALYLGVLFSPSIMMAPFADSFGPQFRELWLHVVLRTLETAGPAFIKWGQWAATRPDLFP 246
R L L F P I S G + R L+ GP F+K+GQ +TR DL P
Sbjct: 30 RWLRLAKPFVPRISAEIVEQSRGRRLR--------LALQELGPIFVKFGQILSTRRDLVP 81
Query: 247 RDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEIFDGFEEAPVASGSIAQVHRASLR 306
+D+ +L L + + IE A G+ + F F+ P+AS SI+QVH A+L
Sbjct: 82 QDIGDELVMLQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLH 141
Query: 307 FRYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NLAAKISSVIPAVKWLRLDESVQQFA 365
R V VKV P + I D ++ +LA + P +R E V +
Sbjct: 142 DRR--------AVVVKVLRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVAEIE 193
Query: 366 VFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECV-SRYVD 424
+ +++DL RE A+ S + D+ P+ ++ H A V T E+ + S +
Sbjct: 194 TTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWS--HTAERVLTLERMYGIPSDDIA 251
Query: 425 ELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAQKKSSQKRLFRSKPHV 484
L + AL+ G + DNF HAD H GNI V S R +S P
Sbjct: 252 LLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWV-----DSDPAR--KSNPRF 304
Query: 485 IFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECTLRLSKQQNCPNPKAFIEEVDEA 544
I LD G+ +LS+ D+ L E F A+ +D R AE L + P IEE++ A
Sbjct: 305 IVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAE----LHVEAGWIPPHVRIEELEAA 360
Query: 545 F-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGNVCTVMVTTLVLEGWQRKLDP 599
++ P + AE M +L RR+++ + + + T L +EG R+LDP
Sbjct: 361 ARSVCEPYFTRPLSQ-ISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDP 419
Query: 600 GYNV 603
++
Sbjct: 420 ELDI 423
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 182/400 (45%), Gaps = 39/400 (9%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L+ L K P K IE G ++ +
Sbjct: 63 ALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQ 122
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRD----FVI 338
+F FE P+AS S+AQVH A L+ G++ V VKV P + IR D F++
Sbjct: 123 VFARFEREPLASASVAQVHAARLK---SGEE-----VVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 339 INLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPK 398
LA ++SS + L E V + ++ ++DL REAA+ S+ NF + P+
Sbjct: 175 ARLAERVSS---EARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQ 231
Query: 399 PVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADM 458
+ P VLV G V+ ++ L+ ALA G + D+F HADM
Sbjct: 232 VYWDWCRPKVLVMERIYGIPVTD-LETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADM 290
Query: 459 HPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDR----VNLVEFFKAVARRD 514
HPGNI V S P I +D G+ L+ D+ NL+ FFK RD
Sbjct: 291 HPGNIFVSTRAPWS---------PQYIAVDCGIVGSLTDEDQDYLARNLIAFFK----RD 337
Query: 515 GRTAAECTLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRR 571
R A+ + + + + +A I V E + P D+ + + +L + RR
Sbjct: 338 YRKVAQLHIDSGWVPAETKVNDFEAAIRTVCE--PIFEKPLKDISF-GQVLLRLFQTARR 394
Query: 572 HRVNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + + + T L +EG R+L P ++ T Q L
Sbjct: 395 FNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|C5BCA6|UBIB_EDWI9 Probable ubiquinone biosynthesis protein UbiB OS=Edwardsiella
ictaluri (strain 93-146) GN=ubiB PE=3 SV=1
Length = 543
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 174/393 (44%), Gaps = 26/393 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+T GP +IK+GQ +TR DLF + +L+ L + A ++ IE + G L +
Sbjct: 61 LQTLGPVWIKFGQMLSTRRDLFAPAIADQLALLQDRVAPFDGALARRQIEASLGGPLEQW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINLA 342
FD F+ +AS SIAQVH A+LR G++ V +KV P + IR D ++ LA
Sbjct: 121 FDDFDSQALASASIAQVHTATLREN--GRE-----VVLKVIRPDIQPIIRADVRLMYRLA 173
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ ++P + LR E V+++ ++ +++L REAA+ + NF + P+
Sbjct: 174 GWVPKLLPDGRRLRPREVVREYEKTLLDELNLLREAANAIQLRRNFDASPMLYIPEVFSD 233
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
+VLV G VS + L+ LA G + D+F HADMHPGN
Sbjct: 234 YCRESVLVMERIYGVPVSD-IAALRAQNTNMKLLAERGVQVFFTQVFRDSFFHADMHPGN 292
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V + P I +D G+ L+K D+ L E F A RD R AE
Sbjct: 293 IFVSYEHPQD---------PQYIGIDCGIVGSLNKADKRYLAENFIAFFNRDYRKVAE-- 341
Query: 523 LRLSKQQNCPNPKAFIEEVDEAFAFWGTP----EGDLVHPAECMQQLLEKVRRHRVNVDG 578
L P IEE + A P D + + L RR + V
Sbjct: 342 --LHVDSGWVPPDTNIEEFEFAIRTVCEPIFEKPLDQISFGHVLLNLFNTARRFNMEVQP 399
Query: 579 NVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+L P ++ T + L
Sbjct: 400 QLVLLQKTLLYVEGLGRQLYPQLDLWTTAKPFL 432
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 182/400 (45%), Gaps = 39/400 (9%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L+ L K P K IE G ++ +
Sbjct: 63 ALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQ 122
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRD----FVI 338
+F FE P+AS S+AQVH A L+ G++ V VKV P + IR D F++
Sbjct: 123 VFARFEREPLASASVAQVHAARLK---SGEE-----VVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 339 INLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPK 398
LA ++SS + L E V + ++ ++DL REAA+ S+ NF + P+
Sbjct: 175 ARLAERVSS---EARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQ 231
Query: 399 PVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADM 458
+ P VLV G V+ ++ L+ ALA G + D+F HADM
Sbjct: 232 VYWDWCRPKVLVMERIYGIPVTD-LETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADM 290
Query: 459 HPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDR----VNLVEFFKAVARRD 514
HPGNI V S P I +D G+ L+ D+ NL+ FFK RD
Sbjct: 291 HPGNIFVSTRAPWS---------PQYIAVDCGIVGSLTDEDQDYLARNLIAFFK----RD 337
Query: 515 GRTAAECTLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRR 571
R A+ + + + + +A I V E + P D+ + + +L + RR
Sbjct: 338 YRKVAQLHIDSGWVPAETKVNDFEAAIRTVCE--PIFEKPLKDISF-GQVLLRLFQTARR 394
Query: 572 HRVNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + + + T L +EG R+L P ++ T Q L
Sbjct: 395 FNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/399 (30%), Positives = 182/399 (45%), Gaps = 39/399 (9%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP FIK+GQ +TR DL P D+ +L+ L K P K IE G ++ ++
Sbjct: 64 LQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQV 123
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRD----FVII 339
F FE P+AS S+AQVH A L+ G++ V VKV P + IR D F++
Sbjct: 124 FARFEREPLASASVAQVHAARLK---SGEE-----VVVKVIRPNLEPVIRSDIAWLFILA 175
Query: 340 NLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKP 399
LA ++SS + L E V + ++ ++DL REAA+ S+ NF + P+
Sbjct: 176 RLAERVSS---EARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQV 232
Query: 400 VYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMH 459
+ P VLV G V+ ++ L+ ALA G + D+F HADMH
Sbjct: 233 YWDWCRPKVLVMERIYGIPVTD-LETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMH 291
Query: 460 PGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDR----VNLVEFFKAVARRDG 515
PGNI V S P I +D G+ L+ D+ NL+ FFK RD
Sbjct: 292 PGNIFVSTRAPWS---------PQYIAVDCGIVGSLTDEDQDYLARNLIAFFK----RDY 338
Query: 516 RTAAECTLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRH 572
R A+ + + + + +A I V E + P D+ + + +L + RR
Sbjct: 339 RKVAQLHIDSGWVPAETKVNDFEAAIRTVCE--PIFEKPLKDISF-GQVLLRLFQTARRF 395
Query: 573 RVNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + + + T L +EG R+L P ++ T Q L
Sbjct: 396 NMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 182/400 (45%), Gaps = 39/400 (9%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L+ L K P K IE G ++ +
Sbjct: 63 ALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQ 122
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRD----FVI 338
+F FE P+AS S+AQVH A L+ G++ V VKV P + IR D F++
Sbjct: 123 VFARFEREPLASASVAQVHAARLK---SGEE-----VVVKVIRPNLEPVIRSDIAWLFIL 174
Query: 339 INLAAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPK 398
LA ++SS + L E V + ++ ++DL REAA+ S+ NF + P+
Sbjct: 175 ARLAERVSS---EARRLHPVEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQ 231
Query: 399 PVYPLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADM 458
+ P VLV G V+ ++ L+ ALA G + D+F HADM
Sbjct: 232 VYWDWCRPKVLVMERIYGIPVTD-LETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADM 290
Query: 459 HPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDR----VNLVEFFKAVARRD 514
HPGNI V S P I +D G+ L+ D+ NL+ FFK RD
Sbjct: 291 HPGNIFVSTRAPWS---------PQYIAVDCGIVGSLTDEDQDYLARNLIAFFK----RD 337
Query: 515 GRTAAECTLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRR 571
R A+ + + + + +A I V E + P D+ + + +L + RR
Sbjct: 338 YRKVAQLHIDSGWVPAETKVNDFEAAIRTVCE--PIFEKPLKDISF-GQVLLRLFQTARR 394
Query: 572 HRVNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + + + T L +EG R+L P ++ T Q L
Sbjct: 395 FNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFL 434
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/397 (30%), Positives = 177/397 (44%), Gaps = 33/397 (8%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP FIK+GQ +TR DL P D+ +L+ L + P IER G +S+
Sbjct: 62 ALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAPVSQ 121
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ P+AS S+AQVH A L+ G++ V VKV PG+ IR+D + L
Sbjct: 122 LFARFDSQPLASASVAQVHAAQLK---SGEE-----VVVKVVRPGLKPVIRQDLAWLFLL 173
Query: 343 AKISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A+I+ A + LR E V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 174 ARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYW 233
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
L VLV G V+ +K LA G + D+F HADMHPG
Sbjct: 234 DLCRHQVLVMERIYGVPVTDLATLADQRTDMK-LLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDR----VNLVEFFKAVARRDGRT 517
NI V S P I +D G+ L+ D+ NL+ FFK RD R
Sbjct: 293 NIFVSTRTPWS---------PQYIAIDCGIIGSLTDEDQDYLARNLIAFFK----RDYRK 339
Query: 518 AAECTLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRV 574
A+ + + +A I V E + P D+ + + +L + RR +
Sbjct: 340 VAQLHIDSGWVPADTKVNEFEAAIRTVCE--PIFEKPLKDISF-GQLLLRLFQTARRFNM 396
Query: 575 NVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
V + + T L +EG R+L P ++ T Q L
Sbjct: 397 EVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPFL 433
>sp|B2VG47|UBIB_ERWT9 Probable ubiquinone biosynthesis protein UbiB OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=ubiB PE=3
SV=1
Length = 545
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 176/401 (43%), Gaps = 26/401 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
LE GP +IK+GQ +TR DLFP + +L+ L K A KK IE + G +
Sbjct: 60 ALEQLGPVWIKFGQMMSTRRDLFPPHIADQLAMLQDKVAPFDGAQAKKLIEHSLGAPVES 119
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINL 341
FD F+ P+AS SIAQVH A+L+ G++ V +KV P + I+ D +I L
Sbjct: 120 QFDDFDIVPLASASIAQVHTATLKEN--GRE-----VVIKVIRPDILPVIKADMKLIYRL 172
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + ++P + LR E V + ++ +++L REAA+ + NF + + P+
Sbjct: 173 ARWVPRLLPDGRRLRPQEVVADYEKTLLDELNLLREAANAIQLRRNFADGQMLYVPEIYS 232
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
+LV G +S V L+ H LA G + D+F HADMHPG
Sbjct: 233 DYCSENMLVMERIYGIPISD-VATLEQHGVNMKLLAERGVQVFFTQVFRDSFFHADMHPG 291
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V + P I +D G+ L+K D+ L E F A RD R AE
Sbjct: 292 NIFVSYEHPED---------PQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAEL 342
Query: 522 TLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDG 578
+ + N + + I V E E H + L RR + V
Sbjct: 343 HVDSGWVPADTNVEDFEFAIRTVCEPIFEKPLAEISFGH---VLLNLFNTARRFNMEVQP 399
Query: 579 NVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLKADWAKS 619
+ + T L +EG R+L P ++ T + L +W K
Sbjct: 400 QLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFL--ENWIKD 438
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 175/393 (44%), Gaps = 25/393 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L L + P + K IE G+++SE
Sbjct: 62 ALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEEQLGKKISE 121
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ P+AS S+AQVH A L+ G++ V VKV PG+ I +D + +
Sbjct: 122 VFSRFDVDPLASASVAQVHAAQLK---TGEE-----VVVKVIRPGLKPIIGQDLAWLFIL 173
Query: 343 AKISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A+ + A + L + V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 174 ARAAERFSADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
P VLV G V+ +K LA G + D+F HADMHPG
Sbjct: 234 DWCRPKVLVMERIYGVQVTDLATLADQRTDMK-MLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V S P I +D G+ L+ D+ L A +RD R A+
Sbjct: 293 NIFVSTVNPWS---------PQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQL 343
Query: 522 TLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDG 578
+ + + +A I V E + P D+ + + +L + RR + V
Sbjct: 344 HIDSGWVPAETKLNEFEAAIRTVCE--PIFEKPLKDISF-GQVLMRLFQTARRFNMEVQP 400
Query: 579 NVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+L P ++ +T Q L
Sbjct: 401 QLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFL 433
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 118/394 (29%), Positives = 178/394 (45%), Gaps = 25/394 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
LE+ GP F+K+GQ +TR DL D+ +L++L + P A IE++ G + I
Sbjct: 56 LESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAPVDTI 115
Query: 284 FDGFEEAPVASGSIAQVHRASLRF-RYPGQKVKPIVVAVKVRHPGVGESIRRDFVII-NL 341
FD FE PVAS SIAQVH A+L+ ++ G++ VAVKV P + I D ++ ++
Sbjct: 116 FDDFERVPVASASIAQVHFATLKIGQHAGKQ-----VAVKVLRPNMLPVIDSDLALLRDI 170
Query: 342 AAKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A + K L+ E V +F ++ ++DL REAA+ S+ NF + P+ +
Sbjct: 171 AVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYW 230
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
VLV G +S+ VD L+ LA G + D F HADMHPG
Sbjct: 231 EYCTANVLVMERMVGVPISQ-VDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPG 289
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V + + I LD G+ LS D+ L + F A +RD A
Sbjct: 290 NIQVSLDPAHFGR---------YIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATL 340
Query: 522 TLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDL----VHPAECMQQLLEKVRRHRVNVD 577
L + +EE++ A P D + + + +L RR V +
Sbjct: 341 HL----ESGWVPATTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQ 396
Query: 578 GNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R LDP ++ T + L
Sbjct: 397 PQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q2NWT9|UBIB_SODGM Probable ubiquinone biosynthesis protein UbiB OS=Sodalis
glossinidius (strain morsitans) GN=ubiB PE=3 SV=1
Length = 544
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 183/407 (44%), Gaps = 41/407 (10%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK+GQ +TR DLFP + +L+ L + A + IER+ G+ L
Sbjct: 61 LQELGPVWIKFGQMLSTRRDLFPPAIADQLAMLQDRVQPFDGALARAHIERSMGQPLETW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINLA 342
FD F++ P+AS SIAQVH A L+ GQ+ V +KV P + I+ D ++ LA
Sbjct: 121 FDDFQQEPLASASIAQVHTARLK---NGQE-----VVIKVIRPDILPMIKADMRLMYRLA 172
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ + ++P + LR E V ++ ++ +++L REAA+ + NF D S P P
Sbjct: 173 SWVPHLLPDGRRLRPVEVVLEYEKTLLDELNLLREAANAIQLRRNF----DGS-PMLYIP 227
Query: 403 LVHPAVLVETYEQGECVSRY-VDELQGHERLKSA---LAHIGTHALLKMLLVDNFIHADM 458
V+P ET E + V+++ E+ + LA G + D+F H DM
Sbjct: 228 EVYPDYCSETMMVMERIYGVPVNDVAALEKQGTNMKLLAERGVQVFFTQVFRDSFFHGDM 287
Query: 459 HPGNILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTA 518
HPGNI V ++ P I +D G+ L+K D+ L E F A RD R
Sbjct: 288 HPGNIFVSFEHPEN---------PQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKV 338
Query: 519 AECTLRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHP------AECMQQLLEKVRRH 572
AE L P +E+ + FA E P + L RR
Sbjct: 339 AE----LHVDSGWVPPDTNVEDFE--FAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRF 392
Query: 573 RVNVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLKADWAKS 619
+ V + + T L +EG R+L P ++ T + L +W K
Sbjct: 393 NMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFL--EEWIKD 437
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 176/395 (44%), Gaps = 30/395 (7%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
E GP FIK+GQ +TR DL P D+ ++L+ L + P ++ IE + G + +
Sbjct: 61 FEALGPIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEASLGCTIETL 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIIN-LA 342
FD F+E P+AS SIAQVH A R + G++ + +KV P + I D ++ LA
Sbjct: 121 FDDFDETPLASASIAQVHTA--RLKENGRE-----IVIKVIRPDIEPVIEADLRLMQALA 173
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
++ +P LR E V+++ ++ +++L REAA+ + NF + + P+
Sbjct: 174 RLVARFVPQSGRLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSEALYVPEVFTE 233
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
VLV G VS + L+ + LA G + D+F HADMHPGN
Sbjct: 234 HCREQVLVMERIYGIPVSD-IAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGN 292
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V ++ P I +D G+ L++ D+ L E F A RD R AE
Sbjct: 293 IFVSYEHPEN---------PLWIGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAE-- 341
Query: 523 LRLSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHP------AECMQQLLEKVRRHRVNV 576
L + P ++E + FA E P + L RR + V
Sbjct: 342 --LHVESGWVPPDTKVDEFE--FAIRTVLEPIFEKPLSEISFGHVLLNLFNTARRFNMQV 397
Query: 577 DGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+L P ++ T + L
Sbjct: 398 QPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYL 432
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 177/397 (44%), Gaps = 33/397 (8%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L L + P + IE G ++ E
Sbjct: 63 ALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAKVGE 122
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ P+AS S+AQVH A L+ G++ V VKV PG+ I +D + L
Sbjct: 123 VFSRFDVEPLASASVAQVHAARLK---SGEE-----VVVKVVRPGLKPVIAQDLAWLFLI 174
Query: 343 AKISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
AK + A + L E V + + ++DL REAA+ S+ NF + + P+ +
Sbjct: 175 AKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYW 234
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
L P VLV G V+ +K LA G + D+F HADMHPG
Sbjct: 235 DLCRPKVLVMERIYGVPVTDMATLADQRTDMK-MLAERGVEVFFTQVFRDSFFHADMHPG 293
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDR----VNLVEFFKAVARRDGRT 517
NI V + S P I +D G+ L+ D+ NL+ FFK RD R
Sbjct: 294 NIFVSTVKPWS---------PQYIAIDCGIVGSLTAEDQDYLARNLIAFFK----RDYRR 340
Query: 518 AAECTLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRV 574
A+ + + Q +A I V E + P D+ + + +L + RR +
Sbjct: 341 VAQLHIDSGWVPAQTKVNEFEAAIRTVCE--PIFEKPLKDISF-GQVLMRLFQTARRFNM 397
Query: 575 NVDGNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
V + + T L +EG R+L P ++ T + L
Sbjct: 398 EVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFL 434
>sp|Q0I208|UBIB_HAES1 Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus somnus
(strain 129Pt) GN=ubiB PE=3 SV=1
Length = 544
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 172/394 (43%), Gaps = 25/394 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK GQ +TR DLFP ++ +L+ L S ++ IE+A G L
Sbjct: 61 LQELGPVWIKLGQMLSTRRDLFPAEIADELALLQDNVEAFSGKIARQQIEQALGSSLENW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFV-IINLA 342
F F+E +AS SIAQVH A L+ +K V +KV P + I D + LA
Sbjct: 121 FTDFDENALASASIAQVHTAKLKLGEEQEK----EVVIKVLRPNIQPQIEADLSWMYKLA 176
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ + LR E +Q++ + ++DL E A+ + NF + PK
Sbjct: 177 GLLPKLFREGYRLRAVEVIQEYEKTLRDELDLRVEMANAIKLRENFLDSPMLYIPKMYEA 236
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
H V+V G VS V+ LQ + LA G + D+F HADMHPGN
Sbjct: 237 FCHKNVIVMERIYGIPVSD-VETLQRNGTDMKLLAERGVQVFFTQVFRDSFFHADMHPGN 295
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V + P I +D G+ +L+++D+ L E F A RD R A+
Sbjct: 296 IFVNPH---------YPENPQYIGIDCGIVGKLNESDKRYLAESFVAFFNRDYRRVAQMH 346
Query: 523 LRLSKQQNCPNPKAFIEEVDEAF-----AFWGTPEGDLVHPAECMQQLLEKVRRHRVNVD 577
+ N I++ ++AF + P ++ A+ + L R + V
Sbjct: 347 VDAGWTPQDTN----IDDFEQAFREVCEPIFAKPLSEISF-AQVLLNLFNVAREFNMQVQ 401
Query: 578 GNVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+L P ++ DT + L
Sbjct: 402 PQLVLLQKTLLYIEGLGRQLYPQLDLWDTAKPFL 435
>sp|Q7MZ83|UBIB_PHOLL Probable ubiquinone biosynthesis protein UbiB OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=ubiB PE=3
SV=1
Length = 545
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 175/400 (43%), Gaps = 26/400 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP +IK+GQ +TR DLFP + +L+ L + A ++ IE A G L
Sbjct: 61 LQELGPVWIKFGQMLSTRRDLFPPAIADQLALLQDRVASFDGALARQYIETALGGALETW 120
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDF-VIINLA 342
FD FE +AS SIAQVH A R + GQ+ + +KV P + I+ D ++ LA
Sbjct: 121 FDDFEPIALASASIAQVHTA--RLKENGQE-----IVIKVIRPDILPIIKADIRLMYRLA 173
Query: 343 AKISSVIPAVKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+ ++P + LR E V+++ ++ +++L REAA+ + NF + P+
Sbjct: 174 NWVPMLLPDGRRLRPREVVREYEKTLIDELNLLREAANAIQLRRNFENSSTLYVPEIYSD 233
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
VLV G VS ++ L+ LA G + D+F HADMHPGN
Sbjct: 234 YCRENVLVMERVYGIPVSD-IEALEAQNTNMRLLAERGVQVFFTQVFRDSFFHADMHPGN 292
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V + P I +D G+ L+K D+ L E F A RD R AE
Sbjct: 293 IFVSYEHPED---------PFYIGIDYGIVGSLNKDDKRYLAENFIAFFNRDYRKVAELH 343
Query: 523 LR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGN 579
+ + N + + I V E E H + L RR + V
Sbjct: 344 VDSGWVPSDTNVEDFEFAIRTVCEPIFEKPLAEISFGH---VLLNLFNTARRFNMAVQPQ 400
Query: 580 VCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLLLKADWAKS 619
+ + T L +EG R+L P ++ T + L +W S
Sbjct: 401 LVLLQKTLLYVEGLGRQLYPQLDLWKTAKPFL--EEWLHS 438
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 173/392 (44%), Gaps = 25/392 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP FIK+GQ +TR DL P D+ +L L + P IE G R+ ++
Sbjct: 63 LQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAINLIEEQLGARICDV 122
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA 343
F F+E P+AS S+AQVH A L+ G++ V VKV PG+ I +D + + A
Sbjct: 123 FSRFDETPLASASVAQVHAACLK---TGEE-----VVVKVVRPGLKPVIGQDLAWLFILA 174
Query: 344 KISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+++ + A + L + V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 175 RMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWD 234
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
P VLV G V+ +K LA G + D+F HADMHPGN
Sbjct: 235 WCRPKVLVMERIYGLQVTDMAGLADQRTDMK-LLAERGVEIFFTQIFRDSFFHADMHPGN 293
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V S P I +D G+ L+ D+ L A +RD R A+
Sbjct: 294 IFVSTVNPWS---------PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLH 344
Query: 523 LR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGN 579
+ + + +A I V E + P D+ + + +L + RR + V
Sbjct: 345 IDSGWVPAETKLNEFEAAIRTVCE--PIFEKPLKDISF-GQVLMRLFQTARRFNMEVQPQ 401
Query: 580 VCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+L P ++ T Q L
Sbjct: 402 LVLLQKTLLNIEGLGRQLYPDLDLWSTAQPYL 433
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 176/393 (44%), Gaps = 25/393 (6%)
Query: 223 TLETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSE 282
L+ GP FIK+GQ +TR DL P D+ +L L + P + IE G+++S+
Sbjct: 62 ALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQLGKKISD 121
Query: 283 IFDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLA 342
+F F+ P+AS S+AQVH A L+ G++ V VKV PG+ I +D + +
Sbjct: 122 VFSRFDIEPLASASVAQVHAAKLK---TGEE-----VVVKVIRPGLKPIIAQDLAWLFIL 173
Query: 343 AKISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVY 401
A+ + + A + L + V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 174 ARAAEKLSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233
Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPG 461
P VLV G V+ +K LA G + D+F HADMHPG
Sbjct: 234 DWCRPKVLVMERIYGIQVTDLATLADQRTDMK-MLAERGVEIFFTQVFRDSFFHADMHPG 292
Query: 462 NILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAEC 521
NI V Q S P I +D G+ L+ D+ L A +RD R A+
Sbjct: 293 NIFVSTVQPWS---------PQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQL 343
Query: 522 TLR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDG 578
+ + + +A I V E + P D+ + + +L + RR + V
Sbjct: 344 HIDSGWVPAETKLNEFEAAIRTVCE--PIFEKPLKDISF-GQVLMRLFQTARRFNMEVQP 400
Query: 579 NVCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+L P ++ +T Q L
Sbjct: 401 QLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFL 433
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 174/392 (44%), Gaps = 25/392 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP FIK+GQ +TR DL P D+ +L L + P K IE G R+ ++
Sbjct: 63 LQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAIKLIEEQLGARICDV 122
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA 343
F F+E P+AS S+AQVH A L+ G++ V VKV PG+ I +D + + A
Sbjct: 123 FSRFDEKPLASASVAQVHAACLK---TGEE-----VVVKVVRPGLKPIIGQDLAWLFILA 174
Query: 344 KISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+++ + A + L + V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 175 RMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANASQLRRNFEGSDLLYVPQVYWD 234
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
P VLV G V+ +K LA G + D+F HADMHPGN
Sbjct: 235 WCRPKVLVMERIYGLQVTDMAGLADQRTDMK-LLAERGVEIFFTQIFRDSFFHADMHPGN 293
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V + P I +D G+ L+ D+ L A +RD R A+
Sbjct: 294 IFVSTVNPWA---------PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLH 344
Query: 523 LR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGN 579
+ + + +A I V E + P D+ + + +L + RR + V
Sbjct: 345 IDSGWVPAETKLNEFEAAIRTVCE--PIFEKPLKDISF-GQVLMRLFQTARRFNMEVQPQ 401
Query: 580 VCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+L P ++ T Q L
Sbjct: 402 LVLLQKTLLNIEGLGRQLYPELDLWSTAQPYL 433
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 174/392 (44%), Gaps = 25/392 (6%)
Query: 224 LETAGPAFIKWGQWAATRPDLFPRDLCKKLSELHSKAPEHSFAYTKKTIERAFGRRLSEI 283
L+ GP FIK+GQ +TR DL P D+ +L L + P K IE G R+ ++
Sbjct: 63 LQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAIKLIEEQLGARICDV 122
Query: 284 FDGFEEAPVASGSIAQVHRASLRFRYPGQKVKPIVVAVKVRHPGVGESIRRDFVIINLAA 343
F F+E P+AS S+AQVH A L+ G++ V VKV PG+ I +D + + A
Sbjct: 123 FSRFDETPLASASVAQVHAACLK---TGEE-----VVVKVVRPGLKPIIGQDLAWLFILA 174
Query: 344 KISSVIPA-VKWLRLDESVQQFAVFMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYP 402
+++ + A + L + V + + ++DL REAA+ S+ NF + P+ +
Sbjct: 175 RMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWD 234
Query: 403 LVHPAVLVETYEQGECVSRYVDELQGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGN 462
P VLV G V+ +K LA G + D+F HADMHPGN
Sbjct: 235 WCRPKVLVMERIYGLQVTDMAGLADQRTDMK-MLAERGVEIFFTQIFRDSFFHADMHPGN 293
Query: 463 ILVRVAQKKSSQKRLFRSKPHVIFLDVGMTAELSKTDRVNLVEFFKAVARRDGRTAAECT 522
I V + P I +D G+ L+ D+ L A +RD R A+
Sbjct: 294 IFVSTVNPWA---------PKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLH 344
Query: 523 LR---LSKQQNCPNPKAFIEEVDEAFAFWGTPEGDLVHPAECMQQLLEKVRRHRVNVDGN 579
+ + + +A I V E + P D+ + + +L + RR + V
Sbjct: 345 IDSGWVPAETKLNEFEAAIRTVCE--PIFEKPLKDISF-GQVLMRLFQTARRFNMEVQPQ 401
Query: 580 VCTVMVTTLVLEGWQRKLDPGYNVMDTLQTLL 611
+ + T L +EG R+L P ++ T Q L
Sbjct: 402 LVLLQKTLLNIEGLGRQLYPELDLWSTAQPYL 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,114,050
Number of Sequences: 539616
Number of extensions: 8883362
Number of successful extensions: 27787
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 26977
Number of HSP's gapped (non-prelim): 214
length of query: 630
length of database: 191,569,459
effective HSP length: 124
effective length of query: 506
effective length of database: 124,657,075
effective search space: 63076479950
effective search space used: 63076479950
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)