Your job contains 1 sequence.
>006806
MGNRRFAQVSTSDEDEDVPPPSSRTRKSEENKEQQSLRQSKRKRIKLQEEEDYEEPEEER
KASKRERRDKGKVREAEKPRNDGVEDEEEEEEEEEQPQEDAKPVGELVRFSGKGRGRRSH
YEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRK
GGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTV
ERKLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPEETAAREQEDQLKAKRSLRKK
NISPLDVSREEDSTTRSDQYVKAETPGSCTSNASEYYNILSKFKALTGETHRDKWLERLL
QGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIA
AVTALEKASHDTLSLDFQKYNQKLRQLLFNLKSTALLARRLLNGELEPSKILNMSPNELK
EGLTAEEMAKKEPDESEQMQMTDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY
ASRDEASSLTIDGPGSAAKSVGIVPLATAKFDSLEKNLLSPRESEKLANDVLKKSSEAYM
PVLEAQRSFGKSKTEENSDASNAKKADVQS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006806
(630 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2123136 - symbol:AT4G11560 species:3702 "Arabi... 1545 6.4e-166 2
TAIR|locus:2040209 - symbol:AT2G25120 species:3702 "Arabi... 566 9.3e-67 3
TAIR|locus:2097134 - symbol:AT3G43990 species:3702 "Arabi... 509 2.6e-63 3
TAIR|locus:2121601 - symbol:AT4G23120 species:3702 "Arabi... 515 2.6e-57 2
TAIR|locus:2097915 - symbol:SUO "'shuttle' in chinese" sp... 267 1.9e-18 3
TAIR|locus:2097925 - symbol:AT3G48060 species:3702 "Arabi... 267 3.0e-18 3
ZFIN|ZDB-GENE-010501-3 - symbol:pbrm1l "polybromo 1, like... 160 4.2e-08 2
TAIR|locus:2120693 - symbol:EBS "EARLY BOLTING IN SHORT D... 143 2.5e-07 1
UNIPROTKB|E1BNH8 - symbol:E1BNH8 "Uncharacterized protein... 154 5.9e-07 1
UNIPROTKB|E7EVG2 - symbol:PBRM1 "Protein polybromo-1" spe... 150 1.4e-06 1
UNIPROTKB|Q86U86 - symbol:PBRM1 "Protein polybromo-1" spe... 150 1.6e-06 1
MGI|MGI:1923998 - symbol:Pbrm1 "polybromo 1" species:1009... 149 2.0e-06 1
UNIPROTKB|H0Y5B5 - symbol:PBRM1 "Protein polybromo-1" spe... 146 2.6e-06 1
UNIPROTKB|E2RRR3 - symbol:PBRM1 "Uncharacterized protein"... 146 4.2e-06 1
UNIPROTKB|E2RRL7 - symbol:PBRM1 "Uncharacterized protein"... 146 4.4e-06 1
RGD|1565549 - symbol:Pbrm1 "polybromo 1" species:10116 "R... 146 4.4e-06 1
UNIPROTKB|F1NLL8 - symbol:PBRM1 "Protein polybromo-1" spe... 143 8.9e-06 1
UNIPROTKB|Q90941 - symbol:PBRM1 "Protein polybromo-1" spe... 143 8.9e-06 1
UNIPROTKB|F1NFN2 - symbol:BAHD1 "Uncharacterized protein"... 135 1.3e-05 1
TAIR|locus:2137256 - symbol:AT4G04260 species:3702 "Arabi... 124 1.6e-05 1
TAIR|locus:2026874 - symbol:AT1G68580 species:3702 "Arabi... 141 3.2e-05 2
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 120 0.00026 1
UNIPROTKB|F1PKB9 - symbol:BAHD1 "Uncharacterized protein"... 126 0.00040 2
>TAIR|locus:2123136 [details] [associations]
symbol:AT4G11560 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA]
InterPro:IPR001025 InterPro:IPR003618 Pfam:PF01426 Pfam:PF07500
PROSITE:PS51038 PROSITE:PS51321 SMART:SM00439 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 HOGENOM:HOG000237923
EMBL:AY080679 EMBL:AY133747 IPI:IPI00528925 RefSeq:NP_192893.2
UniGene:At.44003 ProteinModelPortal:Q8RXT5 PaxDb:Q8RXT5
PRIDE:Q8RXT5 EnsemblPlants:AT4G11560.1 GeneID:826760
KEGG:ath:AT4G11560 TAIR:At4g11560 eggNOG:NOG282987
InParanoid:Q8RXT5 OMA:KELDPPV PhylomeDB:Q8RXT5
ProtClustDB:CLSN2690291 Genevestigator:Q8RXT5 Uniprot:Q8RXT5
Length = 587
Score = 1545 (548.9 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
Identities = 298/465 (64%), Positives = 360/465 (77%)
Query: 101 AKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK 160
A PVG+ V +GKG+G+R+H+ F +DGN Y+LE PVLL PED +QKPYVAIIK+ITQ+K
Sbjct: 101 ACPVGDSVNVTGKGKGKRTHFNQFAYDGNTYDLEVPVLLVPEDKSQKPYVAIIKDITQTK 160
Query: 161 DGSMMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHK 220
DGSMM+ GQWFYRPEEA+++GGGNW S DTRELFYSFHRDEVPAESVMH+CVV+FVP HK
Sbjct: 161 DGSMMILGQWFYRPEEAEKRGGGNWQSSDTRELFYSFHRDEVPAESVMHRCVVYFVPAHK 220
Query: 221 QLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPE 280
QLP RK +PGFIV+KVYDTVE+KLWKLTDKDYED+KQ EID+LV+KT LGDLPD+E E
Sbjct: 221 QLPKRKNNPGFIVRKVYDTVEKKLWKLTDKDYEDSKQREIDVLVKKTMNVLGDLPDLESE 280
Query: 281 ETAAREQEDQLKAKRSLRKKNISPLDVSREEDSTTRSDQYVKAETPGSCTSNASEYYNIL 340
+ +QE+ LKAKRS RK NISP+DV REED++ +KAETPGS +SE+Y IL
Sbjct: 281 DMLV-DQENVLKAKRSFRKVNISPVDVRREEDAS------LKAETPGSGAGISSEHYAIL 333
Query: 341 SKFKALTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENG 400
KF +LTG+ HRDK L +LL+ +Q+IC ++ A K G E ++K ENG
Sbjct: 334 EKFDSLTGDAHRDKCLGKLLEAVQHICYIPENKQAGDEAKVGSDASHLEQDEKDTKPENG 393
Query: 401 SREKGQKNGKSFIWPDTAIAAVTALEKASHDTLSLDFQKYNQKLRQLLFNLKSTALLARR 460
EK F+WPD A+ V ALE ASH +L+ DFQKYNQK+R L+FNLK+TALLARR
Sbjct: 394 KDEK-------FLWPDAAVPQVCALENASHASLASDFQKYNQKMRTLVFNLKNTALLARR 446
Query: 461 LLNGELEPSKILNMSPNELKEGLTAEEMAKKEPDESEQMQMTDARCSRCNECKVGLRDII 520
LLNGELEP+ ILNMSP ELKEGLTA+E KKEPD++++MQMT RCSRC++ VGLRDII
Sbjct: 447 LLNGELEPATILNMSPTELKEGLTADETTKKEPDDADRMQMTSVRCSRCSQLTVGLRDII 506
Query: 521 QAGHGDRYQLECIACGHSWYASRDEASSLTI--DGPGSAAKSVGI 563
QAGHGDRYQLEC+ CG+SWYASRDE S+LTI D P + I
Sbjct: 507 QAGHGDRYQLECVDCGYSWYASRDEVSTLTIVTDKPAQGTEKEDI 551
Score = 765 (274.4 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
Identities = 166/311 (53%), Positives = 205/311 (65%)
Query: 286 EQEDQLKAKRSLRKKNISPLDVSREE-DSTTRSDQYVKAETPGSCTSNASEYYNILSKFK 344
E ED L + ++ K S V+ D D +KAETPGS +SE+Y IL KF
Sbjct: 278 ESEDMLVDQENVLKAKRSFRKVNISPVDVRREEDASLKAETPGSGAGISSEHYAILEKFD 337
Query: 345 ALTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREK 404
+LTG+ HRDK L +LL+ +Q+IC ++ A K G E ++K ENG EK
Sbjct: 338 SLTGDAHRDKCLGKLLEAVQHICYIPENKQAGDEAKVGSDASHLEQDEKDTKPENGKDEK 397
Query: 405 GQKNGKSFIWPDTAIAAVTALEKASHDTLSLDFQKYNQKLRQLLFNLKSTALLARRLLNG 464
F+WPD A+ V ALE ASH +L+ DFQKYNQK+R L+FNLK+TALLARRLLNG
Sbjct: 398 -------FLWPDAAVPQVCALENASHASLASDFQKYNQKMRTLVFNLKNTALLARRLLNG 450
Query: 465 ELEPSKILNMSPNELKEGLTAEEMAKKEPDESEQMQMTDARCSRCNECKVGLRDIIQAGH 524
ELEP+ ILNMSP ELKEGLTA+E KKEPD++++MQMT RCSRC++ VGLRDIIQAGH
Sbjct: 451 ELEPATILNMSPTELKEGLTADETTKKEPDDADRMQMTSVRCSRCSQLTVGLRDIIQAGH 510
Query: 525 GDRYQLECIACGHSWYASRDEASSLTI--DGPGSAAKSVGIVPLATAKFDSLEKNLLSPR 582
GDRYQLEC+ CG+SWYASRDE S+LTI D P T K D +EKNL SPR
Sbjct: 511 GDRYQLECVDCGYSWYASRDEVSTLTIVTDKPAQG----------TEKED-IEKNLTSPR 559
Query: 583 ESEKLANDVLK 593
E+ K ++ LK
Sbjct: 560 ETNKPKDEALK 570
Score = 91 (37.1 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 3 NRRFAQVSTSDEDEDVPPPSSRTRKSEENKEQQSLRQSKRKRIKL 47
+RRFAQVS SDE++DVP S+ R S +E R+ KRK +KL
Sbjct: 4 SRRFAQVS-SDEEDDVPITRSKGRNSASPEESLGKRR-KRKTVKL 46
Score = 41 (19.5 bits), Expect = 1.2e-160, Sum P(2) = 1.2e-160
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 2 GNRRFAQVSTSDED--EDVPPPSSRTRKSEENKEQ 34
GN+ ++ D+D E+ P + + EE +E+
Sbjct: 63 GNKEDEDMAEGDDDQAEEETNPEAEEEEDEEEEEK 97
Score = 37 (18.1 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 241 ERKLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPEE 281
+RK + +K+ ED + + D ++T + D E EE
Sbjct: 56 DRKKKRKGNKEDEDMAEGDDDQAEEETNPEAEEEEDEEEEE 96
>TAIR|locus:2040209 [details] [associations]
symbol:AT2G25120 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001025 Pfam:PF01426 PROSITE:PS51038 SMART:SM00439
EMBL:CP002685 GO:GO:0003677 IPI:IPI00531195 RefSeq:NP_180084.1
UniGene:At.52905 ProteinModelPortal:F4IRK4
EnsemblPlants:AT2G25120.1 GeneID:817050 KEGG:ath:AT2G25120
OMA:KKDCEEK PhylomeDB:F4IRK4 Uniprot:F4IRK4
Length = 380
Score = 566 (204.3 bits), Expect = 9.3e-67, Sum P(3) = 9.3e-67
Identities = 107/202 (52%), Positives = 149/202 (73%)
Query: 101 AKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEI-TQS 159
AKP+GE+ + +GKG+ ++SH++ F F GN+Y LED V L P+D N KPY AIIK+I +
Sbjct: 66 AKPLGEVSKVTGKGKKKKSHFKTFTFRGNQYALEDSVQLVPDDPNSKPYCAIIKDIYIPN 125
Query: 160 KDGSMMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIH 219
K+ + + WFYRPE+ D+K G W S+D+R LFYSFHRDEV AESV HKCVV+FVP +
Sbjct: 126 KEKYVKLAVHWFYRPEDVDKKHVGKWESKDSRNLFYSFHRDEVFAESVKHKCVVNFVPEN 185
Query: 220 KQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEP 279
KQ+PNR++HP FIVQ VYD V++K+ K TDK+++ ++++EID LV KT RLGDLPDIE
Sbjct: 186 KQIPNRREHPCFIVQNVYDFVKKKVRKFTDKNFDVHQKNEIDRLVAKTSLRLGDLPDIEK 245
Query: 280 EETAAREQEDQLKAKRSLRKKN 301
++ K KR++++K+
Sbjct: 246 DQVTKTS-----KGKRTVQRKS 262
Score = 100 (40.3 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 27/87 (31%), Positives = 52/87 (59%)
Query: 285 REQEDQLKAKRSLRKKNISPLDVSREE-DSTTRSDQYVKAETPGSCTSNASEYYNILSKF 343
+ + D+L AK SLR ++ P D+ +++ T++ + V+ ++P + T Y +IL F
Sbjct: 223 KNEIDRLVAKTSLRLGDL-P-DIEKDQVTKTSKGKRTVQRKSPKTSTV----YKSILEDF 276
Query: 344 KALTGETHRDKWLERLLQGLQYICNSA 370
LTG++ RDK L LL+ +++ C ++
Sbjct: 277 DLLTGDSDRDKRLGELLEAVKHECRTS 303
Score = 99 (39.9 bits), Expect = 9.3e-67, Sum P(3) = 9.3e-67
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 401 SREKGQKNGKSFIWPDTAIAAVTALEKASHDTLSLDFQKYNQKLRQLLFNLK 452
S++KG ++ S+ WPD + V ALE +D+++ D KY+ KL L+ LK
Sbjct: 303 SKKKGARDDDSY-WPDDVVPVVRALEHVFYDSMAEDMSKYHHKLEILVDELK 353
Score = 44 (20.5 bits), Expect = 9.3e-67, Sum P(3) = 9.3e-67
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 10 STSDEDEDVPPPSSRTRKSEENKEQQSLRQSKRKRIK 46
++ DED + T K + +++ ++K+KR K
Sbjct: 9 ASQDEDNVALSNTKETEKKQRKRKKDCEEKNKKKRKK 45
>TAIR|locus:2097134 [details] [associations]
symbol:AT3G43990 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001025 InterPro:IPR003618 Pfam:PF01426 PROSITE:PS51038
SMART:SM00439 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.472.30 EMBL:AL163975 HOGENOM:HOG000237923
ProtClustDB:CLSN2683146 IPI:IPI00530281 PIR:T48953
RefSeq:NP_189985.1 UniGene:At.53714 ProteinModelPortal:Q9LXW1
SMR:Q9LXW1 PaxDb:Q9LXW1 PRIDE:Q9LXW1 EnsemblPlants:AT3G43990.1
GeneID:823516 KEGG:ath:AT3G43990 TAIR:At3g43990 eggNOG:NOG279418
OMA:KCERMSS PhylomeDB:Q9LXW1 Genevestigator:Q9LXW1 Uniprot:Q9LXW1
Length = 380
Score = 509 (184.2 bits), Expect = 2.6e-63, Sum P(3) = 2.6e-63
Identities = 102/219 (46%), Positives = 148/219 (67%)
Query: 101 AKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEI-TQS 159
AK +G+ ++F+GKG+ ++ HYE FEF G +Y L+D VLL PED QK Y+AIIK+I +Q
Sbjct: 54 AKSIGKPIKFTGKGQNKKCHYETFEFHGKQYRLKDFVLLYPEDNKQKEYIAIIKDIYSQE 113
Query: 160 KDGSMMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIH 219
KDG + + QWFYR E+ + K G W + + RE+F+SFH DEV AESV +KC+V+FVP
Sbjct: 114 KDGLVKMEVQWFYRREDIEEKHFGKWKTENPREIFFSFHCDEVFAESVKYKCLVYFVPDD 173
Query: 220 KQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEP 279
KQ+PNR H GFIVQ VYD V +K+ K + + +E+ ++ EID+LV KT +R+G+L D+E
Sbjct: 174 KQIPNRIHHSGFIVQMVYDNVRKKVRKFSHEGFEEEQKFEIDMLVAKTVSRIGNLVDVEK 233
Query: 280 EETAAREQEDQLKAKRSLRK-KNISPLDVSREEDSTTRS 317
+T + KR +RK + +S +S + +S S
Sbjct: 234 VQTTTIPRR-----KRIVRKCERMSSNPISEKLESLPSS 267
Score = 128 (50.1 bits), Expect = 2.6e-63, Sum P(3) = 2.6e-63
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 419 IAAVTALEKASHDTLSLDFQKYNQKLRQLLFNLKSTALLARRLLNGELEPSKILNMSPNE 478
+ V ALE+A +D+ + D KYN KL L+ LK++ +LA RLLNGEL+P + + M+ +
Sbjct: 299 VQMVLALEEALYDSFADDVPKYNYKLELLVERLKNSRVLATRLLNGELKPEQAIKMA--D 356
Query: 479 LKEGLTAEEMA 489
+E E++A
Sbjct: 357 FEEPKLVEDVA 367
Score = 39 (18.8 bits), Expect = 2.6e-63, Sum P(3) = 2.6e-63
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 22 SSRTRKSEENKEQQSLRQSK 41
+++ R+ EE+KE Q +++K
Sbjct: 26 TTKKRRVEESKEMQVKKKAK 45
>TAIR|locus:2121601 [details] [associations]
symbol:AT4G23120 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR001025 Pfam:PF01426 PROSITE:PS51038
SMART:SM00439 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
EMBL:AL031018 EMBL:AL161558 EMBL:AL022347 IPI:IPI00520892
PIR:T04829 RefSeq:NP_194043.1 UniGene:At.54486
ProteinModelPortal:O65464 SMR:O65464 PaxDb:O65464
EnsemblPlants:AT4G23120.1 GeneID:828411 KEGG:ath:AT4G23120
TAIR:At4g23120 eggNOG:NOG239021 HOGENOM:HOG000237923
InParanoid:O65464 OMA:KLEWRPE PhylomeDB:O65464
ProtClustDB:CLSN2683146 ArrayExpress:O65464 Genevestigator:O65464
Uniprot:O65464
Length = 360
Score = 515 (186.3 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 107/220 (48%), Positives = 150/220 (68%)
Query: 101 AKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEI-TQS 159
A+ +G + +GKG ++ HY+ F+F NKY LED VLL PED +KPYVAIIK+I TQ
Sbjct: 29 AQAIGLSHKCTGKGEKKKCHYKTFQFHANKYGLEDSVLLVPED-GEKPYVAIIKDIYTQR 87
Query: 160 KDGSMMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIH 219
K+G + + QW YRPEE ++K GNW S+ +R+LFYSFHRDEV AESV C+VHFV +
Sbjct: 88 KEGHVKLEVQWLYRPEEVEKKYVGNWKSKGSRDLFYSFHRDEVFAESVKDDCIVHFVQEN 147
Query: 220 KQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEP 279
KQ+PNR++HPGFIVQ VYD V++KL KLT ++ ++ EID V+KT R+G L DI
Sbjct: 148 KQIPNRRKHPGFIVQHVYDNVKKKLRKLTFNGFDLQQKREIDHFVEKTILRIGHLRDI-- 205
Query: 280 EETAAREQEDQL-KAKRSLRKKNI-SPLDVSREEDSTTRS 317
+EQ+ + ++KR++ + I ++ SRE ++ S
Sbjct: 206 ----VKEQKTLISRSKRTVPQSYIIKAVETSRESNNVVNS 241
Score = 92 (37.4 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 401 SREKGQKNGKSFIWPDTAIAAVTALEKASHDTLSLDFQKYNQKLRQLLFNLK 452
SR+K + SF WP+ ++ V+ALE+A +D+L D KY+ K+ L+ LK
Sbjct: 273 SRKKQAGDYDSF-WPNDVVSVVSALEQALYDSLKDDIAKYSNKVEILVGKLK 323
Score = 70 (29.7 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 307 VSREEDSTTRSDQYVKAETPGSCTSNASEYYNILSKFKALTGETHRDKWLERLLQGLQYI 366
+SR + + +S Y+ S SN + +IL F LTG++ RDK LE LL+ ++
Sbjct: 213 ISRSKRTVPQS--YIIKAVETSRESN-NVVNSILESFDLLTGDSDRDKSLEELLEVVKPK 269
Query: 367 CNSA 370
C ++
Sbjct: 270 CRTS 273
>TAIR|locus:2097915 [details] [associations]
symbol:SUO "'shuttle' in chinese" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0035278 "negative regulation of translation
involved in gene silencing by miRNA" evidence=IDA]
InterPro:IPR001025 InterPro:IPR003617 InterPro:IPR017923
Pfam:PF01426 Pfam:PF08711 PROSITE:PS51038 PROSITE:PS51319
SMART:SM00439 SMART:SM00509 GO:GO:0005634 EMBL:CP002686
GO:GO:0003677 GO:GO:0006351 GO:GO:0000932 GO:GO:0035278
Gene3D:1.20.930.10 SUPFAM:SSF47676 IPI:IPI00524563
RefSeq:NP_190388.2 RefSeq:NP_850669.2 UniGene:At.19774 PRIDE:F4JCS8
EnsemblPlants:AT3G48050.1 EnsemblPlants:AT3G48050.2 GeneID:823960
KEGG:ath:AT3G48050 OMA:DVNTESW ArrayExpress:F4JCS8 Uniprot:F4JCS8
Length = 1613
Score = 267 (99.0 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 55/149 (36%), Positives = 85/149 (57%)
Query: 123 AFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRKGG 182
+F DG K + D L P + P++ II+ I ++ + + W YRP E + G
Sbjct: 43 SFSKDGRKISVGDCALFKPPQ-DCPPFIGIIRLIIAEEEDKLKLGVNWLYRPTEL-KLGK 100
Query: 183 GNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVER 242
G L + ELFYSFH D +PA S++H C V F+P +LP+ F+ ++VYD
Sbjct: 101 GILLEAEPNELFYSFHEDNIPAASLLHPCKVAFLPRGVELPSGIS--SFVCRRVYDVTNE 158
Query: 243 KLWKLTDKDYEDNKQHEIDLLVQKTQARL 271
+LW LTD+DY D++Q E+D L+ KT++ +
Sbjct: 159 RLWWLTDQDYIDDRQLEVDKLLCKTRSEM 187
Score = 49 (22.3 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 333 ASEYYNILSKFKALTGETHRDKWLERLLQG 362
A++ ++ LS+F L G D+WL+ + +G
Sbjct: 309 ATDKFDCLSRFVQLRGLPVFDEWLQEVHKG 338
Score = 40 (19.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 580 SPRESEKLANDVLKKSSEAY--MPV-LEAQRS--FGKS----KTEENSDASNAKKA 626
SP++S++L +D L A +PV L A ++ GKS ++ +NS+ KKA
Sbjct: 345 SPKDSDRLVDDFLLVLLRALDKLPVNLNALQTCNIGKSVNHLRSHKNSEIG--KKA 398
Score = 39 (18.8 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 346 LTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKG 405
L E+ + L+ +L G Q S + D+ +GG D + DK+ G G+ G
Sbjct: 682 LNAESWQSNELKDILTGSQEAAGSP-LVAGDE--RGG----DLKDSDKASGNVKGTSSLG 734
Query: 406 Q--KNGK 410
K+G+
Sbjct: 735 NEFKSGE 741
Score = 38 (18.4 bits), Expect = 8.5e-18, Sum P(4) = 8.5e-18
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 556 SAAKSVGIVPLATAKFDSLEKN-LLSPRESEKLANDVLKKSS 596
+ + VG+ LA+ D + K+ + SP S+ N V+ ++S
Sbjct: 768 AGSDDVGMNLLASVAADEMSKSPVASPSVSQP-PNSVMNENS 808
Score = 37 (18.1 bits), Expect = 8.5e-18, Sum P(4) = 8.5e-18
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 469 SKILNMSP---NELKEGLTAEEMAKKEP 493
S +LN NELK+ LT + A P
Sbjct: 679 SSVLNAESWQSNELKDILTGSQEAAGSP 706
Score = 37 (18.1 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 579 LSPRESEKLANDVLKKSSEA 598
LSP+E+E L K+S+A
Sbjct: 1080 LSPKEAEDLERPNGPKTSDA 1099
>TAIR|locus:2097925 [details] [associations]
symbol:AT3G48060 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001025 InterPro:IPR003617
InterPro:IPR017923 Pfam:PF01426 Pfam:PF08711 PROSITE:PS51038
PROSITE:PS51319 SMART:SM00439 SMART:SM00509 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351
EMBL:AL049658 Gene3D:1.20.930.10 SUPFAM:SSF47676 UniGene:At.19774
IPI:IPI00534352 PIR:T06677 RefSeq:NP_190389.1 UniGene:At.48751
ProteinModelPortal:Q9SU69 SMR:Q9SU69 STRING:Q9SU69 PaxDb:Q9SU69
PRIDE:Q9SU69 EnsemblPlants:AT3G48060.1 GeneID:823961
KEGG:ath:AT3G48060 TAIR:At3g48060 eggNOG:NOG298939
HOGENOM:HOG000083288 InParanoid:Q9SU69 OMA:TERVECL PhylomeDB:Q9SU69
ProtClustDB:CLSN2684022 Genevestigator:Q9SU69 Uniprot:Q9SU69
Length = 1611
Score = 267 (99.0 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 55/149 (36%), Positives = 85/149 (57%)
Query: 123 AFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRKGG 182
+F DG K + D L P + P++ II+ I ++ + + W YRP E + G
Sbjct: 43 SFSKDGRKISVGDCALFKPPQ-DCPPFIGIIRLIIAEEEDKLKLGVNWLYRPTEL-KLGK 100
Query: 183 GNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVER 242
G L + ELFYSFH D +PA S++H C V F+P +LP+ F+ ++VYD
Sbjct: 101 GILLEAEPNELFYSFHEDNIPAASLLHPCKVAFLPRGVELPSGIS--SFVCRRVYDVTNE 158
Query: 243 KLWKLTDKDYEDNKQHEIDLLVQKTQARL 271
+LW LTD+DY D++Q E+D L+ KT++ +
Sbjct: 159 RLWWLTDQDYIDDRQLEVDKLLCKTRSEM 187
Score = 47 (21.6 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 333 ASEYYNILSKFKALTGETHRDKWLERLLQG 362
A+ ++ LS+F L G D+WL+ + +G
Sbjct: 309 ATNRFDCLSRFVQLRGLPVFDEWLQEVHKG 338
Score = 40 (19.1 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 579 LSPRESEKLANDVLKKSSEA 598
LSP+E+E L K+S+A
Sbjct: 1080 LSPKEAEDLKRPNAPKTSDA 1099
Score = 40 (19.1 bits), Expect = 3.0e-18, Sum P(3) = 3.0e-18
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 580 SPRESEKLANDVLKKSSEAY--MPV-LEAQRS--FGKS----KTEENSDASNAKKA 626
SP++S++L +D L A +PV L A ++ GKS ++ +NS+ KKA
Sbjct: 345 SPKDSDRLVDDFLLVLLRALDKLPVNLNALQTCNIGKSVNHLRSHKNSEIG--KKA 398
Score = 38 (18.4 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
Identities = 36/139 (25%), Positives = 56/139 (40%)
Query: 469 SKILNMSP---NELKEGLTAEEMAKKEP-----DESEQMQMTDARCSRCNECKVGLRDII 520
S +LN NELK+ LT + A P DE E + S + L +
Sbjct: 678 SSVLNAESWQSNELKDILTGSQEATGSPLVVAGDEREGALKDSDKASGNVKATSSLGNEF 737
Query: 521 QAG--HGDRYQLECIACGHSWYASRDEASSLTIDGPGSAAKSVGIVPLATAKFDSLEKN- 577
++G HG A S + +SL GS VG+ LA+ D + K+
Sbjct: 738 KSGERHGGTLS-SMNALIESCVRYSETNASLA----GS--DDVGMNLLASVAADEMSKSP 790
Query: 578 LLSPRESEKLANDVLKKSS 596
+ SP S+ N ++ ++S
Sbjct: 791 VASPSVSQP-PNSLMNENS 808
>ZFIN|ZDB-GENE-010501-3 [details] [associations]
symbol:pbrm1l "polybromo 1, like" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR009071 InterPro:IPR001025
InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297 SMART:SM00439
Pfam:PF00505 ZFIN:ZDB-GENE-010501-3 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00390000003017 EMBL:BX546446 EMBL:BX649498
IPI:IPI00993768 Ensembl:ENSDART00000131203 Uniprot:E7EZ71
Length = 1648
Score = 160 (61.4 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 41/134 (30%), Positives = 68/134 (50%)
Query: 116 GRRSHY-EAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRP 174
G +S Y + F+ N Y + D V + P + N +P+V I+++ + + G + G WFYRP
Sbjct: 926 GSQSSYSQDCSFENNTYSIGDYVYVQPAEANLQPHVVCIEKLWKDESGQQWMYGCWFYRP 985
Query: 175 EEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-PNR-KQHPGFI 232
EE +L + E+F S + + VP ++ KC V FV + +L P K ++
Sbjct: 986 EETFHLATRKFLEK---EIFKSDYNNRVPFSKILGKCFVLFVKDYFKLQPEGFKPEDVYV 1042
Query: 233 VQKVYDTVERKLWK 246
+ Y TV K +K
Sbjct: 1043 CESRY-TVRTKAFK 1055
Score = 56 (24.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 467 EPSKILNMSPNELK--EGLTAEEMAKKEPDESEQMQMTDARCSRCNE 511
+P ++L+ S LK EGL+AE + D+S + Q D R SR E
Sbjct: 1562 KPQRLLH-SEAYLKYIEGLSAESSTVSKWDQSLKAQRKDCRLSREQE 1607
>TAIR|locus:2120693 [details] [associations]
symbol:EBS "EARLY BOLTING IN SHORT DAYS" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009845 "seed germination" evidence=IMP]
[GO:0009911 "positive regulation of flower development"
evidence=IGI] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] InterPro:IPR001025 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 Pfam:PF01426 PROSITE:PS50016
PROSITE:PS51038 SMART:SM00249 SMART:SM00439 EMBL:CP002687
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0009845
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0009911 InterPro:IPR019786 PROSITE:PS01359
IPI:IPI00541104 RefSeq:NP_193945.2 UniGene:At.49737
ProteinModelPortal:F4JL28 SMR:F4JL28 PRIDE:F4JL28
EnsemblPlants:AT4G22140.1 GeneID:828303 KEGG:ath:AT4G22140
OMA:NQPYVAR Uniprot:F4JL28
Length = 234
Score = 143 (55.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 118 RSHYEAFEFDG-NKY-ELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPE 175
R +++ G NK D VL+ P D + PYVA +++I ++ V +W+YRPE
Sbjct: 16 RKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCRWYYRPE 75
Query: 176 EADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPN 224
E+ GG +ELF S H D A ++ KC+VH + +L N
Sbjct: 76 ESL---GGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLEN 121
>UNIPROTKB|E1BNH8 [details] [associations]
symbol:E1BNH8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0007507 "heart development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR001025 InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297
SMART:SM00439 Pfam:PF00505 GO:GO:0008285 GO:GO:0007507
GO:GO:0000776 GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001890
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 OMA:WLKVGDC GeneTree:ENSGT00390000003017
EMBL:DAAA02054367 IPI:IPI00699896 Ensembl:ENSBTAT00000019672
Uniprot:E1BNH8
Length = 1664
Score = 154 (59.3 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 46/202 (22%), Positives = 91/202 (45%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + N +P++ I+ + + G + G WFYRP E
Sbjct: 920 RTYSQDCSFKNSMYHVGDYVYVEPSEVNLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 979
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-P-NRKQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P N + F+ +
Sbjct: 980 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCES 1036
Query: 236 VYDTVER-----KLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPEETAAREQEDQ 290
Y + KLW + + ++ L V + + + + E+ ++ +
Sbjct: 1037 RYSAKTKSFKKIKLWTMPVSSVRFVPR-DVPLPVVRVASVFANADKADDEKNTDNSEDSR 1095
Query: 291 LKAKRSLRK-KNISPLDVSREE 311
+ +L K K P+++S E
Sbjct: 1096 TEDSCNLEKEKEDVPVEMSNGE 1117
>UNIPROTKB|E7EVG2 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR001025 InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297
SMART:SM00439 Pfam:PF00505 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 EMBL:AC104446
HGNC:HGNC:30064 ChiTaRS:PBRM1 EMBL:AC112215 IPI:IPI00916875
ProteinModelPortal:E7EVG2 SMR:E7EVG2 Ensembl:ENST00000423351
UCSC:uc003dez.1 ArrayExpress:E7EVG2 Bgee:E7EVG2 Uniprot:E7EVG2
Length = 1461
Score = 150 (57.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 46/202 (22%), Positives = 91/202 (45%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + N +P++ I+ + + G + G WFYRP E
Sbjct: 944 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1003
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-P-NRKQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P N + F+ +
Sbjct: 1004 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCES 1060
Query: 236 VYDTVER-----KLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPEETAAREQEDQ 290
Y + KLW + + ++ L V + + + + E+ ++ +
Sbjct: 1061 RYSAKTKSFKKIKLWTMPISSVRFVPR-DVPLPVVRVASVFANADKGDDEKNTDNSEDSR 1119
Query: 291 LKAKRSLRK-KNISPLDVSREE 311
+ +L K K P+++S E
Sbjct: 1120 AEDNFNLEKEKEDVPVEMSNGE 1141
>UNIPROTKB|Q86U86 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0001890 "placenta
development" evidence=IEA] [GO:0007507 "heart development"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=NAS] [GO:0007067 "mitosis"
evidence=TAS] [GO:0000228 "nuclear chromosome" evidence=NAS]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR001025 InterPro:IPR001487
Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51038 SMART:SM00297 SMART:SM00439 Pfam:PF00505
GO:GO:0008285 GO:GO:0007507 GO:GO:0000776 GO:GO:0007067
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0001890 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 eggNOG:COG5076 InterPro:IPR018359 GO:GO:0000228
MIM:144700 CTD:55193 HOVERGEN:HBG079860 KO:K11757 EMBL:AF197569
EMBL:AF225870 EMBL:AF225871 EMBL:AF225872 EMBL:AF177387
EMBL:AY281068 EMBL:BC115009 EMBL:BC115010 EMBL:BC115011
EMBL:BC129934 EMBL:BC129935 EMBL:AK056541 IPI:IPI00023097
IPI:IPI00301041 IPI:IPI00334894 IPI:IPI00384176 IPI:IPI00398781
IPI:IPI00640304 IPI:IPI00873041 IPI:IPI00909142 IPI:IPI00910435
RefSeq:NP_060783.3 UniGene:Hs.189920 UniGene:Hs.476320 PDB:2KTB
PDB:3G0J PDB:3HMF PDB:3IU5 PDB:3IU6 PDB:3K2J PDB:3LJW PDB:3MB4
PDB:3TLP PDBsum:2KTB PDBsum:3G0J PDBsum:3HMF PDBsum:3IU5
PDBsum:3IU6 PDBsum:3K2J PDBsum:3LJW PDBsum:3MB4 PDBsum:3TLP
ProteinModelPortal:Q86U86 SMR:Q86U86 DIP:DIP-33045N IntAct:Q86U86
MINT:MINT-1195749 STRING:Q86U86 PhosphoSite:Q86U86 DMDM:73921624
PaxDb:Q86U86 PRIDE:Q86U86 Ensembl:ENST00000296302
Ensembl:ENST00000337303 Ensembl:ENST00000356770
Ensembl:ENST00000394830 Ensembl:ENST00000409057
Ensembl:ENST00000409114 Ensembl:ENST00000409767
Ensembl:ENST00000410007 Ensembl:ENST00000412587 GeneID:55193
KEGG:hsa:55193 UCSC:uc003deq.2 UCSC:uc003der.2 UCSC:uc003des.2
UCSC:uc003det.2 UCSC:uc003deu.2 UCSC:uc003dew.2 UCSC:uc003dey.2
UCSC:uc010hmk.1 GeneCards:GC03M052579 H-InvDB:HIX0003364
HGNC:HGNC:30064 HPA:HPA015629 MIM:606083 neXtProt:NX_Q86U86
PharmGKB:PA162398846 InParanoid:Q86U86 OMA:WLKVGDC PhylomeDB:Q86U86
ChEMBL:CHEMBL1795184 ChiTaRS:PBRM1 EvolutionaryTrace:Q86U86
GenomeRNAi:55193 NextBio:59051 ArrayExpress:Q86U86 Bgee:Q86U86
Genevestigator:Q86U86 GermOnline:ENSG00000163939 Uniprot:Q86U86
Length = 1689
Score = 150 (57.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 46/202 (22%), Positives = 91/202 (45%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + N +P++ I+ + + G + G WFYRP E
Sbjct: 945 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1004
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-P-NRKQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P N + F+ +
Sbjct: 1005 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCES 1061
Query: 236 VYDTVER-----KLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPEETAAREQEDQ 290
Y + KLW + + ++ L V + + + + E+ ++ +
Sbjct: 1062 RYSAKTKSFKKIKLWTMPISSVRFVPR-DVPLPVVRVASVFANADKGDDEKNTDNSEDSR 1120
Query: 291 LKAKRSLRK-KNISPLDVSREE 311
+ +L K K P+++S E
Sbjct: 1121 AEDNFNLEKEKEDVPVEMSNGE 1142
>MGI|MGI:1923998 [details] [associations]
symbol:Pbrm1 "polybromo 1" species:10090 "Mus musculus"
[GO:0000776 "kinetochore" evidence=IDA] [GO:0001890 "placenta
development" evidence=IMP] [GO:0001974 "blood vessel remodeling"
evidence=TAS] [GO:0003007 "heart morphogenesis" evidence=TAS]
[GO:0003349 "epicardium-derived cardiac endothelial cell
differentiation" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IC] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007507 "heart development"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0060948 "cardiac vascular smooth
muscle cell development" evidence=TAS] [GO:0060979 "vasculogenesis
involved in coronary vascular morphogenesis" evidence=TAS]
InterPro:IPR009071 InterPro:IPR001025 InterPro:IPR001487
Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51038 SMART:SM00297 SMART:SM00439 MGI:MGI:1923998
Pfam:PF00505 GO:GO:0005634 GO:GO:0045893 GO:GO:0008285
GO:GO:0000776 GO:GO:0003677 GO:GO:0003007 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001974 GO:GO:0001890
GO:GO:0060979 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
eggNOG:COG5076 InterPro:IPR018359 GO:GO:0060948 EMBL:AC154446
HOVERGEN:HBG079860 OrthoDB:EOG41NTK5 ChiTaRS:PBRM1 EMBL:AC154727
EMBL:BC023452 EMBL:BC029037 EMBL:BC055456 EMBL:BC055708
EMBL:BF451491 EMBL:CN530699 EMBL:AK009582 EMBL:AK030781
EMBL:AK030252 EMBL:AK166588 IPI:IPI00856358 IPI:IPI01023209
UniGene:Mm.27913 PDB:2YQD PDBsum:2YQD ProteinModelPortal:Q8BSQ9
SMR:Q8BSQ9 DIP:DIP-48885N IntAct:Q8BSQ9 STRING:Q8BSQ9
PhosphoSite:Q8BSQ9 PaxDb:Q8BSQ9 PRIDE:Q8BSQ9
Ensembl:ENSMUST00000112094 Ensembl:ENSMUST00000112095
GeneTree:ENSGT00390000003017 EvolutionaryTrace:Q8BSQ9 Bgee:Q8BSQ9
Genevestigator:Q8BSQ9 GO:GO:0003349 Uniprot:Q8BSQ9
Length = 1634
Score = 149 (57.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 46/202 (22%), Positives = 91/202 (45%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + N +P++ I+ + + G + G WFYRP E
Sbjct: 945 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1004
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-P-NRKQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P N + F+ +
Sbjct: 1005 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCES 1061
Query: 236 VYDTVER-----KLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPEETAAREQEDQ 290
Y + KLW + + ++ L V + + + + E+ +++
Sbjct: 1062 RYSAKTKSFKKIKLWTMPISSVRFVPR-DVPLPVVRVASVFANADKGDDEKNTDNSDDNR 1120
Query: 291 LKAKRSLRK-KNISPLDVSREE 311
+ +L K K P+++S E
Sbjct: 1121 AEDNFNLEKEKEDVPVEMSNGE 1142
>UNIPROTKB|H0Y5B5 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001025
InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297 SMART:SM00439
GO:GO:0003677 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 EMBL:AC104446 HGNC:HGNC:30064 ChiTaRS:PBRM1
EMBL:AC112215 ProteinModelPortal:H0Y5B5 Ensembl:ENST00000446103
Bgee:H0Y5B5 Uniprot:H0Y5B5
Length = 1085
Score = 146 (56.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 35/132 (26%), Positives = 64/132 (48%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + N +P++ I+ + + G + G WFYRP E
Sbjct: 903 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 962
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-P-NRKQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P N + F+ +
Sbjct: 963 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCES 1019
Query: 236 VYDTVERKLWKL 247
Y + K+
Sbjct: 1020 RYSAKTKSFKKI 1031
>UNIPROTKB|E2RRR3 [details] [associations]
symbol:PBRM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR001025 InterPro:IPR001487
Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51038 SMART:SM00297 SMART:SM00439 Pfam:PF00505
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00390000003017 EMBL:AAEX03012193
EMBL:AAEX03012194 EMBL:AAEX03012195 Ensembl:ENSCAFT00000014499
Uniprot:E2RRR3
Length = 1635
Score = 146 (56.5 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 45/202 (22%), Positives = 91/202 (45%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + + +P++ I+ + + G + G WFYRP E
Sbjct: 946 RTYSQDCSFKNSMYHVGDYVYVEPAEASLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1005
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-P-NRKQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P N + F+ +
Sbjct: 1006 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCES 1062
Query: 236 VYDTVER-----KLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPEETAAREQEDQ 290
Y + KLW + + ++ L V + + + + E+ ++ +
Sbjct: 1063 RYSAKTKSFKKIKLWTMPISSVRFVPR-DVPLPVVRVASVFANADKGDDEKNTDNSEDSR 1121
Query: 291 LKAKRSLRK-KNISPLDVSREE 311
+ +L K K P+++S E
Sbjct: 1122 TEDSYNLEKEKEDVPVEMSNGE 1143
>UNIPROTKB|E2RRL7 [details] [associations]
symbol:PBRM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR001025 InterPro:IPR001487
Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51038 SMART:SM00297 SMART:SM00439 Pfam:PF00505
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 OMA:WLKVGDC GeneTree:ENSGT00390000003017
EMBL:AAEX03012193 EMBL:AAEX03012194 EMBL:AAEX03012195
Ensembl:ENSCAFT00000014524 Uniprot:E2RRL7
Length = 1689
Score = 146 (56.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 45/202 (22%), Positives = 91/202 (45%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + + +P++ I+ + + G + G WFYRP E
Sbjct: 945 RTYSQDCSFKNSMYHVGDYVYVEPAEASLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1004
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-P-NRKQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P N + F+ +
Sbjct: 1005 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCES 1061
Query: 236 VYDTVER-----KLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPEETAAREQEDQ 290
Y + KLW + + ++ L V + + + + E+ ++ +
Sbjct: 1062 RYSAKTKSFKKIKLWTMPISSVRFVPR-DVPLPVVRVASVFANADKGDDEKNTDNSEDSR 1120
Query: 291 LKAKRSLRK-KNISPLDVSREE 311
+ +L K K P+++S E
Sbjct: 1121 TEDSYNLEKEKEDVPVEMSNGE 1142
>RGD|1565549 [details] [associations]
symbol:Pbrm1 "polybromo 1" species:10116 "Rattus norvegicus"
[GO:0000776 "kinetochore" evidence=IEA;ISO] [GO:0001890 "placenta
development" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0007507 "heart development"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA;ISO] InterPro:IPR009071 InterPro:IPR001025
InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297 SMART:SM00439
Pfam:PF00505 RGD:1565549 GO:GO:0008285 GO:GO:0007507 GO:GO:0000776
GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0001890 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
OrthoDB:EOG41NTK5 GeneTree:ENSGT00390000003017 IPI:IPI00766567
Ensembl:ENSRNOT00000016581 UCSC:RGD:1565549 NextBio:655693
ArrayExpress:D3ZT52 Uniprot:D3ZT52
Length = 1704
Score = 146 (56.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 45/202 (22%), Positives = 91/202 (45%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + N +P++ I+ + + G + G WFYRP E
Sbjct: 960 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1019
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-PNR-KQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P + F+ +
Sbjct: 1020 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPETFRDEDVFVCES 1076
Query: 236 VYDTVER-----KLWKLTDKDYEDNKQHEIDLLVQKTQARLGDLPDIEPEETAAREQEDQ 290
Y + KLW + + ++ L V + + + + E++ +++
Sbjct: 1077 RYSAKTKSFKKIKLWTMPISSVRFVPR-DVPLPVVRVASVFANADKGDEEKSTDNSDDNR 1135
Query: 291 LKAKRSLRK-KNISPLDVSREE 311
+ +L K K P+++S E
Sbjct: 1136 AEDSFNLEKEKEDVPVEMSNGE 1157
>UNIPROTKB|F1NLL8 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000776
"kinetochore" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] InterPro:IPR009071
InterPro:IPR001025 InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297
SMART:SM00439 Pfam:PF00505 GO:GO:0008285 GO:GO:0000776
GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 IPI:IPI00571677 OMA:WLKVGDC
GeneTree:ENSGT00390000003017 EMBL:AADN02052994
Ensembl:ENSGALT00000002415 Uniprot:F1NLL8
Length = 1630
Score = 143 (55.4 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 34/132 (25%), Positives = 64/132 (48%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + N +P++ I+ + + G + G WFYRP E
Sbjct: 943 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1002
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-P-NRKQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P N + ++ +
Sbjct: 1003 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCES 1059
Query: 236 VYDTVERKLWKL 247
Y + K+
Sbjct: 1060 RYSAKTKSFKKI 1071
>UNIPROTKB|Q90941 [details] [associations]
symbol:PBRM1 "Protein polybromo-1" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR001025
InterPro:IPR001487 Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297 SMART:SM00439
Pfam:PF00505 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 eggNOG:COG5076 InterPro:IPR018359 EMBL:X90849
IPI:IPI00571677 PIR:JC5056 RefSeq:NP_990496.1 UniGene:Gga.3045
PDB:1W4S PDBsum:1W4S ProteinModelPortal:Q90941 SMR:Q90941
STRING:Q90941 PRIDE:Q90941 GeneID:396074 KEGG:gga:396074 CTD:55193
HOGENOM:HOG000045795 HOVERGEN:HBG079860 InParanoid:Q90941 KO:K11757
OrthoDB:EOG41NTK5 EvolutionaryTrace:Q90941 NextBio:20816133
Uniprot:Q90941
Length = 1633
Score = 143 (55.4 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 34/132 (25%), Positives = 64/132 (48%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + N +P++ I+ + + G + G WFYRP E
Sbjct: 943 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1002
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-P-NRKQHPGFIVQK 235
+L + E+F S + ++VP ++ KCVV FV + +L P N + ++ +
Sbjct: 1003 FHLATRKFLEK---EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCES 1059
Query: 236 VYDTVERKLWKL 247
Y + K+
Sbjct: 1060 RYSAKTKSFKKI 1071
>UNIPROTKB|F1NFN2 [details] [associations]
symbol:BAHD1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0005677 "chromatin silencing
complex" evidence=IEA] [GO:0031507 "heterochromatin assembly"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001025 Pfam:PF01426
PROSITE:PS51038 SMART:SM00439 GO:GO:0045892 GO:GO:0003677
GO:GO:0003682 GO:GO:0005677 GO:GO:0031507
GeneTree:ENSGT00390000003967 EMBL:AADN02040035 EMBL:AADN02040036
EMBL:AADN02040037 EMBL:AADN02040038 EMBL:AADN02040039
IPI:IPI00582870 Ensembl:ENSGALT00000007423 OMA:HQNEIFA
Uniprot:F1NFN2
Length = 473
Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 36/98 (36%), Positives = 49/98 (50%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQK-PYVAIIKEITQS-KDGSMMVTGQWFYRPE 175
R Y+A E DG + D VLL + PYVA I + + K G +M++ W+YRPE
Sbjct: 309 RKSYQAVERDGEIIRVRDTVLLKSGPRKKSMPYVAKISALWEDPKTGELMMSLLWYYRPE 368
Query: 176 EADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVV 213
+GG N S E+F S H+DE + KC V
Sbjct: 369 HT--QGGRN-PSMHQNEIFASRHQDENSVACIEEKCYV 403
>TAIR|locus:2137256 [details] [associations]
symbol:AT4G04260 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] InterPro:IPR001025 Pfam:PF01426 PROSITE:PS51038
SMART:SM00439 EMBL:CP002687 GO:GO:0003677 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
IPI:IPI00527780 RefSeq:NP_192335.2 UniGene:At.54133
ProteinModelPortal:F4JGB7 SMR:F4JGB7 EnsemblPlants:AT4G04260.1
GeneID:825742 KEGG:ath:AT4G04260 Uniprot:F4JGB7
Length = 193
Score = 124 (48.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 139 LTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFH 198
+ P D + PYVA +++I ++ V +W+Y PEE+ GG L +ELF S H
Sbjct: 1 MRPSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESH--GGRRQL-HGAKELFLSDH 57
Query: 199 RDEVPAESVMHKCVVHFVPIHKQLPN 224
D A ++ KC+VH + +L N
Sbjct: 58 FDVQSAHTIEGKCIVHTFKNYTRLEN 83
>TAIR|locus:2026874 [details] [associations]
symbol:AT1G68580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR001025 Pfam:PF01426
PROSITE:PS51038 SMART:SM00439 INTERPRO:IPR008395 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009506 GO:GO:0003677 Pfam:PF05641
InterPro:IPR014002 SMART:SM00743 EMBL:AY128327 EMBL:BT008396
IPI:IPI00516313 RefSeq:NP_177025.2 UniGene:At.47248
ProteinModelPortal:Q8L7Q0 PaxDb:Q8L7Q0 PRIDE:Q8L7Q0
EnsemblPlants:AT1G68580.2 GeneID:843187 KEGG:ath:AT1G68580
TAIR:At1g68580 eggNOG:NOG246853 HOGENOM:HOG000242436
InParanoid:Q8L7Q0 OMA:DLYEDSK PhylomeDB:Q8L7Q0
ProtClustDB:CLSN2680593 ArrayExpress:Q8L7Q0 Genevestigator:Q8L7Q0
Uniprot:Q8L7Q0
Length = 648
Score = 141 (54.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 45/158 (28%), Positives = 76/158 (48%)
Query: 102 KPVGELVRFSGKG-----RGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEI 156
+P+ ++ FS G R RR HY+++ +G + + D V + E K VA I+++
Sbjct: 117 EPIQQIKTFSWMGFSWTCRKRRKHYQSYLRNGVRISVNDFVYVLAEQ--HKRLVAYIEDL 174
Query: 157 TQSKDGSMMVTGQWFYRPEEADRKGGGNWLSRDT--RELFYSFHRDEVPAESVMHKCVVH 214
+ G MV +WF++ EE G+ LS D RE+F+S +R ++ E + + V
Sbjct: 175 YEDSKGKKMVVVRWFHKTEEV-----GSVLSDDDNDREIFFSLNRQDISIECIDYLATV- 228
Query: 215 FVPIHKQ----LPNRKQHPGFIVQKVYDTVERKLWKLT 248
P H + +P Q F QK+Y K + +T
Sbjct: 229 LSPQHYEKFLKVPMHVQTVAFFCQKLYGDDGLKPYDIT 266
Score = 38 (18.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 380 KGGCKGVDHESEDKSVGTENGSREKGQKNGKS 411
KG CK S D + + S KG ++G S
Sbjct: 333 KGDCKS----SPDSVLAVTDASIFKGDEDGSS 360
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 36/138 (26%), Positives = 62/138 (44%)
Query: 415 PDTAIAAVTALEKASHDTLSLDFQK-YNQKLRQLLFNLK--STALLARRLLNGELEPSKI 471
P ++ A+E A++D + ++ Y K+R L NLK S L R+L+ E+ P +
Sbjct: 165 PKAVLSKAAAVEAAAYDAYGPETKEPYRTKIRSLFQNLKNKSNPTLRVRVLSNEVTPERF 224
Query: 472 LNMSPNELKEG--------LTAEEMAKKEPDESEQMQMTDARCSRCNECKVGLRDIIQAG 523
+ M+ EL+ + E M K ++E+ T +C +C + KV +
Sbjct: 225 VKMTHEELRSDEQREKDRKIQKENMDKAMVAQAERSISTSLQCGKCGQRKVTYTEAQTRS 284
Query: 524 HGDRYQL--ECIACGHSW 539
+ L C+ CG SW
Sbjct: 285 ADEPMTLFCTCMHCGKSW 302
>UNIPROTKB|F1PKB9 [details] [associations]
symbol:BAHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0031507
"heterochromatin assembly" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001025 Pfam:PF01426 PROSITE:PS51038 SMART:SM00439
GO:GO:0045892 GO:GO:0003677 GO:GO:0003682 OMA:RACPQSA GO:GO:0005677
GO:GO:0031507 GeneTree:ENSGT00390000003967 EMBL:AAEX03016066
Ensembl:ENSCAFT00000014534 Uniprot:F1PKB9
Length = 776
Score = 126 (49.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 34/99 (34%), Positives = 49/99 (49%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLT--PEDTNQKPYVAIIKEITQSKD-GSMMVTGQWFYRP 174
R Y+A E G + D VLL P T+ PYVA I + ++ + G +M++ W+YRP
Sbjct: 612 RKSYQAVERHGETIRVRDTVLLKSGPRKTST-PYVAKISALWENPESGELMMSLLWYYRP 670
Query: 175 EEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVV 213
E GG S E+F S H+D+ + KC V
Sbjct: 671 EHLQ---GGRSPSMHENEVFASRHQDQNSVACIEEKCYV 706
Score = 45 (20.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 11 TSDEDEDVPPPSSRTRKSEENKEQQSLRQSKRKRI 45
++DE +++PP + + E L Q +++R+
Sbjct: 85 SADEADELPPDLPKPPSPAPSGEDTGLTQPRKRRL 119
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 630 592 0.00084 120 3 11 23 0.49 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 620 (66 KB)
Total size of DFA: 331 KB (2168 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 66.28u 0.15s 66.43t Elapsed: 00:00:03
Total cpu time: 66.29u 0.15s 66.44t Elapsed: 00:00:03
Start: Fri May 10 14:39:08 2013 End: Fri May 10 14:39:11 2013