BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006806
(630 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 111 SGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQW 170
+G R++ + F + Y + D V + P + N +P++ I+ + + G + G W
Sbjct: 938 TGLSGLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCW 997
Query: 171 FYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFV 216
FYRP E +L +E+F S + ++VP ++ KCVV FV
Sbjct: 998 FYRPNETFHLATRKFLE---KEVFKSDYYNKVPVSKILGKCVVMFV 1040
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 111 SGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQW 170
+G R++ + F + Y + D V + P + N +P++ I+ + + G + G W
Sbjct: 938 AGLSGLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCW 997
Query: 171 FYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFV 216
FYRP E +L +E+F S + ++VP ++ KCVV FV
Sbjct: 998 FYRPNETFHLATRKFLE---KEVFKSDYYNKVPVSKILGKCVVMFV 1040
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++ + F + Y + D V + P + N +P++ I+ + + G + G WFYRP E
Sbjct: 943 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1002
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFV 216
+L +E+F S + ++VP ++ KCVV FV
Sbjct: 1003 FHLATRKFLE---KEVFKSDYYNKVPVSKILGKCVVMFV 1038
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Bahcc1 PE=2 SV=2
Length = 2643
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 103 PVGELVRFSG--------KGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIK 154
P +L ++SG KG+ R+ Y+A + D + PY+ I+
Sbjct: 2483 PARQLWKWSGNPTQRRGMKGKARKLFYKAIVRGKETLRIGDCAVFLSAGRPNLPYIGRIE 2542
Query: 155 EITQSKDGSMMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVV 213
+ +S +M+V +WFY PEE G S L+ S H DE +++ HKC V
Sbjct: 2543 SLWESWGSNMVVKVKWFYHPEETKL---GKRQSDGKNALYQSCHEDENDVQTISHKCQV 2598
>sp|P53236|RSC1_YEAST Chromatin structure-remodeling complex subunit RSC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC1 PE=1 SV=1
Length = 928
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 30/166 (18%)
Query: 93 EEEQPQEDAKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLL-TPEDTNQKPYVA 151
E +P ED P GEL R + E + KY++ D VLL P D N KP V
Sbjct: 342 ELSKPDEDYLPEGEL----------RYPLDDVEINDEKYQIGDWVLLHNPNDIN-KPIVG 390
Query: 152 IIKEITQSKDGSMMVTGQWFYRPEE----ADRKGGGNWLSRDTRELFYSFHRDEVPAESV 207
I + + DG+ + W++RPE+ DR N + + + +RD P + +
Sbjct: 391 QIFRLWSTTDGNKWLNACWYFRPEQTVHRVDRLFYKNEVMKTGQ------YRDH-PIQDI 443
Query: 208 MHKC-VVHFVPIHKQLPNRKQH-PGFIVQKVY---DTVERKL--WK 246
KC V+HF + P+ K + P F+ + Y D V K+ WK
Sbjct: 444 KGKCYVIHFTRFQRGDPSTKVNGPQFVCEFRYNESDKVFNKIRTWK 489
>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=BAHCC1 PE=1 SV=3
Length = 2608
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 113 KGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFY 172
KG+ R+ Y+A + D + PY+ I+ + +S +M+V +WFY
Sbjct: 2466 KGKARKLFYKAIVRGEETLRVGDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFY 2525
Query: 173 RPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVV 213
PEE G L+ S H DE +++ HKC V
Sbjct: 2526 HPEETKL---GKRQCDGKNALYQSCHEDENDVQTISHKCQV 2563
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1
Length = 1658
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 105 GELVRFSG-KGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGS 163
G R +G KGR R+ Y+ + + D + +PY+ I+ + ++ G+
Sbjct: 1485 GTAYRKAGVKGRARKQFYKTIKRGKETITVGDSAVFLSTGRPDRPYIGRIESMWETTTGN 1544
Query: 164 MMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKC-VVHF 215
+V WFY PEE G + LF S H DE +++ H+C V+ F
Sbjct: 1545 KVVRVAWFYHPEETT----GCPKLKFPGALFESPHEDENDVQTISHRCEVLQF 1593
>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein OS=Homo sapiens
GN=TNRC18 PE=1 SV=3
Length = 2968
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 113 KGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFY 172
KG+ R+ Y+A + D + PY+ I+ + +S +M+V +WFY
Sbjct: 2801 KGKARKLFYKAIVRGKEMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNNMVVRVKWFY 2860
Query: 173 RPEEADRKG----GGNWLSRDTRE------------------LFYSFHRDEVPAESVMHK 210
PEE G +W + +R L+ S H DE ++V HK
Sbjct: 2861 HPEETSPGKQFHQGQHWDQKSSRSLPAALRVSSQRKDFMERALYQSSHVDENDVQTVSHK 2920
Query: 211 CVV 213
C+V
Sbjct: 2921 CLV 2923
>sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 protein OS=Mus musculus
GN=Tnrc18 PE=1 SV=2
Length = 2878
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 113 KGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFY 172
KG+ R+ Y+A + D + PY+ I+ + +S +M+V +WFY
Sbjct: 2711 KGKARKLFYKAIVRGKEMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNNMVVRVKWFY 2770
Query: 173 RPEEA------------DRKGGGNWLS--------RDT--RELFYSFHRDEVPAESVMHK 210
PEE D+K G + + +D R L+ S H DE ++V HK
Sbjct: 2771 HPEETSPGKQFHEGQHWDQKSGHSLPAALRASSQRKDFMERALYQSSHVDENDVQTVSHK 2830
Query: 211 CVV 213
C+V
Sbjct: 2831 CLV 2833
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 118 RSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEA 177
R++Y+A D K E+ D VL+ P+D + ++A + + Q G MM QWF E
Sbjct: 732 RAYYKAAMLDDEKIEIGDCVLIHPDDPTKPLFMARVIYMWQESQGEMMFHAQWFVYGSET 791
Query: 178 DRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPN 224
+ D E+F + SV KC V I+K PN
Sbjct: 792 VLGE-----TSDPLEVFPIDECQDTYLGSVNAKCTV----IYKAPPN 829
>sp|Q6BSE2|ORC1_DEBHA Origin recognition complex subunit 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=ORC1 PE=3 SV=2
Length = 810
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 109 RFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTG 168
R S +G+ S + + + ++ E+++ L + N P VAI+KEI D + +
Sbjct: 35 RRSRRGKSTSSQKISLKREEDELEIKEGDFLLVQQDNNSPEVAIVKEIKFGNDNFLDIIV 94
Query: 169 QWFYR---PEEADRKGGGNWLSR---DTRELFYSFHRDEVPAESVMHKC 211
WF R EEAD + R + ELF + + DEV ++ K
Sbjct: 95 SWFIRMRDIEEADLPKVEEYKERSQLNENELFITSYLDEVKLGEIIDKV 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,181,276
Number of Sequences: 539616
Number of extensions: 11435296
Number of successful extensions: 130203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 1725
Number of HSP's that attempted gapping in prelim test: 71958
Number of HSP's gapped (non-prelim): 29718
length of query: 630
length of database: 191,569,459
effective HSP length: 124
effective length of query: 506
effective length of database: 124,657,075
effective search space: 63076479950
effective search space used: 63076479950
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)