Query 006806
Match_columns 630
No_of_seqs 410 out of 1443
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3po3_S Transcription elongatio 100.0 7.5E-40 2.6E-44 317.4 10.9 160 337-542 4-178 (178)
2 1pqv_S STP-alpha, transcriptio 100.0 8.1E-36 2.8E-40 311.1 14.3 153 345-542 142-309 (309)
3 1w4s_A Polybromo, polybromo 1 100.0 1.7E-29 5.9E-34 243.2 9.5 140 103-249 3-144 (174)
4 2lw4_A Transcription elongatio 99.9 7.3E-27 2.5E-31 211.3 3.7 102 345-488 6-109 (113)
5 3swr_A DNA (cytosine-5)-methyl 99.9 6.1E-25 2.1E-29 258.1 17.8 141 100-249 132-283 (1002)
6 3ndq_A Transcription elongatio 99.9 5E-25 1.7E-29 197.8 6.5 97 345-483 10-108 (108)
7 3av4_A DNA (cytosine-5)-methyl 99.9 8.1E-24 2.8E-28 253.8 13.8 141 100-249 443-595 (1330)
8 2dme_A PHD finger protein 3; P 99.9 7.4E-24 2.5E-28 193.5 5.5 105 346-489 7-113 (120)
9 4dov_A ORC1, origin recognitio 99.8 2.7E-19 9.1E-24 170.1 16.9 141 102-249 8-162 (163)
10 3swr_A DNA (cytosine-5)-methyl 99.8 2.4E-18 8.2E-23 202.5 14.6 133 117-250 321-504 (1002)
11 4ft4_B DNA (cytosine-5)-methyl 99.8 9.2E-19 3.1E-23 201.2 10.1 132 117-249 44-182 (784)
12 3av4_A DNA (cytosine-5)-methyl 99.7 6.7E-18 2.3E-22 203.0 11.6 132 117-249 633-814 (1330)
13 1tfi_A Transcriptional elongat 99.3 1.6E-12 5.3E-17 101.6 4.4 42 500-542 6-50 (50)
14 2fl7_A Regulatory protein SIR3 99.2 1.4E-11 5E-16 123.2 6.0 121 127-248 49-191 (232)
15 1m4z_A Origin recognition comp 99.2 1.1E-11 3.8E-16 124.5 4.5 125 127-252 49-195 (238)
16 1qyp_A RNA polymerase II; tran 99.1 7.6E-11 2.6E-15 93.9 4.0 42 500-542 12-56 (57)
17 3h0g_I DNA-directed RNA polyme 98.9 7.4E-10 2.5E-14 99.9 4.0 39 502-541 71-112 (113)
18 1twf_I B12.6, DNA-directed RNA 98.9 1E-09 3.5E-14 100.3 4.2 40 502-542 71-113 (122)
19 3qt1_I DNA-directed RNA polyme 98.7 1.3E-09 4.5E-14 101.1 0.0 39 502-541 91-132 (133)
20 1k81_A EIF-2-beta, probable tr 81.6 1 3.4E-05 32.6 2.9 31 504-540 1-32 (36)
21 2akl_A PHNA-like protein PA012 77.9 0.74 2.5E-05 42.5 1.4 33 499-540 22-55 (138)
22 2fiy_A Protein FDHE homolog; F 76.8 1.8 6E-05 45.2 4.1 50 502-553 181-241 (309)
23 2xzm_6 RPS27E; ribosome, trans 73.0 1.2 4E-05 38.0 1.3 29 503-538 32-60 (81)
24 1qxf_A GR2, 30S ribosomal prot 72.1 0.96 3.3E-05 37.1 0.5 30 503-539 7-36 (66)
25 3j20_W 30S ribosomal protein S 66.6 1.5 5.2E-05 35.6 0.6 29 503-538 15-43 (63)
26 3u5c_b RP61, YS20, 40S ribosom 63.6 1.5 5.2E-05 37.3 0.1 29 503-538 34-62 (82)
27 3iz6_X 40S ribosomal protein S 63.2 1.1 3.9E-05 38.4 -0.8 30 503-539 36-65 (86)
28 1vq8_Z 50S ribosomal protein L 53.0 4.2 0.00014 34.6 1.0 37 495-539 19-55 (83)
29 1pft_A TFIIB, PFTFIIBN; N-term 52.2 6.8 0.00023 29.5 2.0 31 503-540 5-35 (50)
30 2g2k_A EIF-5, eukaryotic trans 46.9 11 0.00039 36.0 3.1 48 504-555 97-146 (170)
31 2e9h_A EIF-5, eukaryotic trans 45.8 14 0.00047 35.0 3.4 46 503-552 103-150 (157)
32 4ayb_P DNA-directed RNA polyme 43.5 3.7 0.00013 31.6 -0.7 31 503-539 3-33 (48)
33 1wii_A Hypothetical UPF0222 pr 43.3 30 0.001 29.5 4.8 38 502-541 22-59 (85)
34 3j21_i 50S ribosomal protein L 43.0 15 0.0005 31.4 2.8 39 494-540 26-64 (83)
35 2d74_B Translation initiation 42.0 9 0.00031 35.9 1.5 31 504-540 105-136 (148)
36 1kdx_A CBP; complex (transcrip 40.2 64 0.0022 27.3 6.4 65 349-452 12-76 (81)
37 1ffk_W Ribosomal protein L37AE 39.6 19 0.00064 30.0 2.9 38 494-539 18-55 (73)
38 3iz5_m 60S ribosomal protein L 38.9 18 0.00062 31.4 2.8 39 494-540 27-65 (92)
39 3h0g_L DNA-directed RNA polyme 38.6 14 0.00046 30.0 1.9 30 502-540 20-49 (63)
40 2ca6_A RAN GTPase-activating p 38.1 8.8 0.0003 39.1 0.9 12 40-51 330-341 (386)
41 3izc_m 60S ribosomal protein R 35.1 22 0.00076 30.8 2.8 39 494-540 27-65 (92)
42 1nee_A EIF-2-beta, probable tr 33.8 13 0.00045 34.4 1.2 29 504-538 103-132 (138)
43 2pk7_A Uncharacterized protein 33.4 14 0.00047 30.4 1.1 42 502-552 7-48 (69)
44 3llr_A DNA (cytosine-5)-methyl 32.3 21 0.00071 33.6 2.3 43 127-171 13-58 (154)
45 2hf1_A Tetraacyldisaccharide-1 32.3 17 0.00057 29.7 1.5 41 503-552 8-48 (68)
46 2jr6_A UPF0434 protein NMA0874 32.0 17 0.00057 29.7 1.4 42 502-552 7-48 (68)
47 4a17_Y RPL37A, 60S ribosomal p 30.1 22 0.00074 31.5 1.9 39 494-540 27-65 (103)
48 3cw2_K Translation initiation 29.4 12 0.0004 34.7 0.1 30 503-538 103-133 (139)
49 1twf_L ABC10-alpha, DNA-direct 29.2 19 0.00065 29.6 1.3 29 502-539 27-55 (70)
50 2js4_A UPF0434 protein BB2007; 28.7 24 0.00084 28.9 1.9 42 502-552 7-48 (70)
51 3jyw_9 60S ribosomal protein L 28.6 24 0.00082 29.3 1.8 42 491-540 14-55 (72)
52 2gfu_A DNA mismatch repair pro 28.4 31 0.0011 31.2 2.7 45 126-172 18-68 (134)
53 1dl6_A Transcription factor II 27.0 20 0.00069 28.2 1.1 30 504-540 12-41 (58)
54 3zzs_A Transcription attenuati 26.7 79 0.0027 25.6 4.4 48 166-216 13-60 (65)
55 3cc2_Z 50S ribosomal protein L 25.7 32 0.0011 31.1 2.2 37 495-539 52-88 (116)
56 2a7y_A Hypothetical protein RV 24.7 42 0.0014 28.6 2.6 43 132-175 7-49 (83)
57 2e2z_A TIM15; protein import, 24.6 21 0.00072 31.4 0.8 34 502-539 12-48 (100)
58 2vut_I AREA, nitrogen regulato 24.6 11 0.00037 28.3 -0.9 31 505-541 3-34 (43)
59 1gnf_A Transcription factor GA 24.2 11 0.00038 28.6 -0.9 32 504-541 5-37 (46)
60 1i7f_A Heat shock protein 33; 23.1 22 0.00075 36.6 0.8 49 499-550 223-281 (292)
61 2k3r_A Ribonuclease P protein 22.9 54 0.0019 29.5 3.2 37 503-541 60-101 (123)
62 1dxg_A Desulforedoxin; non-hem 22.7 31 0.0011 24.5 1.3 12 528-539 5-16 (36)
63 3o9x_A Uncharacterized HTH-typ 22.4 69 0.0024 27.9 3.8 37 504-541 3-48 (133)
64 2k0n_A Mediator of RNA polymer 21.8 1.7E+02 0.0059 24.7 5.7 66 348-452 8-73 (85)
65 3cng_A Nudix hydrolase; struct 21.4 55 0.0019 30.2 3.1 30 505-539 5-35 (189)
66 3ga8_A HTH-type transcriptiona 21.1 84 0.0029 25.5 3.8 37 504-541 3-48 (78)
67 3zte_A Tryptophan operon RNA-b 21.0 84 0.0029 26.2 3.6 48 166-216 21-68 (78)
68 3j20_Y 30S ribosomal protein S 21.0 64 0.0022 24.7 2.8 29 504-540 20-48 (50)
69 2eqj_A Metal-response element- 20.7 85 0.0029 25.7 3.6 28 130-159 13-40 (66)
70 2m0o_A PHD finger protein 1; t 20.3 69 0.0023 27.0 3.0 29 129-159 25-53 (79)
71 2qkd_A Zinc finger protein ZPR 20.1 79 0.0027 34.1 4.3 39 502-540 219-260 (404)
72 4hcz_A PHD finger protein 1; p 20.1 1E+02 0.0035 24.6 3.8 28 130-159 3-30 (58)
73 1nui_A DNA primase/helicase; z 20.1 41 0.0014 33.0 2.0 30 502-538 13-42 (255)
No 1
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=100.00 E-value=7.5e-40 Score=317.38 Aligned_cols=160 Identities=18% Similarity=0.283 Sum_probs=135.1
Q ss_pred hhhhccccCCcChhhHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCcccccccccCCccccccCCCCCCCChh
Q 006806 337 YNILSKFKALTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPD 416 (630)
Q Consensus 337 ~~~l~~~~~lTgd~~RDK~le~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 416 (630)
-++.|+++ +|||++||||+++|++||+...+.. +.
T Consensus 4 ~~d~v~~~-~~~d~vRdk~~~lL~~aL~~~~~~~--------------------------------------------~~ 38 (178)
T 3po3_S 4 KNDGVDTA-IYHHKLRDQVLKALYDVLAKESEHP--------------------------------------------PQ 38 (178)
T ss_dssp ------------CHHHHHHHHHHHHHTTSSSSCS--------------------------------------------TT
T ss_pred cCCCcCcC-cCCChHHHHHHHHHHHHHhcCCCCc--------------------------------------------hh
Confidence 35678888 7999999999999999998865321 34
Q ss_pred hHHHHHHHHHHHHHHHcCc-ChH-HHHHHHHHHHHhcc--cCHHHHHHhhcCCCCccccccCChhhhcChHhHHHHHhcC
Q 006806 417 TAIAAVTALEKASHDTLSL-DFQ-KYNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKEGLTAEEMAKKE 492 (630)
Q Consensus 417 ~v~~~A~~IE~alf~~~~~-~~~-kYk~KiRSL~fNLK--kNp~Lr~rVl~GeIsP~~La~Ms~eEMASdelkeer~k~~ 492 (630)
.+..+|.+||.+||..|++ ++. +|++++|||+|||| +||.|+++|++|+|+|..||.|+++||||+++++++++.+
T Consensus 39 ~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e~~~ 118 (178)
T 3po3_S 39 SILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIA 118 (178)
T ss_dssp HHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHSSSCSHHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCCCCCHHHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHHHHH
Confidence 7789999999999999986 454 89999999999998 9999999999999999999999999999999999998777
Q ss_pred Cchhhhccc--------CccccCCCCCCceEEEEeeeccCCCc---eEEEcCcCCcccccc
Q 006806 493 PDESEQMQM--------TDARCSRCNECKVGLRDIIQAGHGDR---YQLECIACGHSWYAS 542 (630)
Q Consensus 493 ~e~i~~~~m--------~~~~C~~C~~~k~~y~q~q~tRsADE---~Fv~C~~Cg~rWk~s 542 (630)
.+.|.++++ +.+.|++||++++.|+|+| +||||| +||.|.+|||+|+||
T Consensus 119 ~e~l~~~~~~~~~~~~t~~~~Cp~C~~~~a~~~q~Q-~rsaDE~mt~f~~C~~C~~~w~f~ 178 (178)
T 3po3_S 119 KQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQ-TRSAAAPLTTFCTCEACGNRWKFS 178 (178)
T ss_dssp HHHHHHTBCCCCCCCCBSSSCCSSSCCSCEECCCCC-CSCTTSCCCCCEEETTTCCEECCC
T ss_pred HHHHHHhhhccccCCCcCCcCCCCCCCCceEEEEee-cccCCCCCcEEEEcCCCCCeeccC
Confidence 778877765 2479999999999999999 999999 899999999999986
No 2
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=8.1e-36 Score=311.14 Aligned_cols=153 Identities=20% Similarity=0.348 Sum_probs=137.0
Q ss_pred CCcChhhHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCcccccccccCCccccccCCCCCCCChhhHHHHHHH
Q 006806 345 ALTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTA 424 (630)
Q Consensus 345 ~lTgd~~RDK~le~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~v~~~A~~ 424 (630)
..|||.+||+|+++|+++|....... +..+..+|.+
T Consensus 142 ~~~~d~~R~k~r~~L~~aL~~~~~~~--------------------------------------------~~~~~~~A~~ 177 (309)
T 1pqv_S 142 AIYHHKLRDQVLKALYDVLAKESEHP--------------------------------------------PQSILHTAKA 177 (309)
T ss_pred CcCChHHHHHHHHHHHHHHhcCCCcc--------------------------------------------chhHHHHHHH
Confidence 36889999999999999997653210 2366789999
Q ss_pred HHHHHHHHcCcChHH--HHHHHHHHHHhcc--cCHHHHHHhhcCCCCccccccCChhhhcChHhHHHHHhcCCchhhhcc
Q 006806 425 LEKASHDTLSLDFQK--YNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKEGLTAEEMAKKEPDESEQMQ 500 (630)
Q Consensus 425 IE~alf~~~~~~~~k--Yk~KiRSL~fNLK--kNp~Lr~rVl~GeIsP~~La~Ms~eEMASdelkeer~k~~~e~i~~~~ 500 (630)
||.+||+.|+++..+ |++++|||+|||| +||.|+++||+|+|+|.+||.|+++||||+++++++++...+.|.+++
T Consensus 178 IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasde~k~~~~~~~~e~l~~~~ 257 (309)
T 1pqv_S 178 IESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQ 257 (309)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999887777 9999999999998 999999999999999999999999999999999999877777777665
Q ss_pred c--------CccccCCCCCCceEEEEeeeccCCCc---eEEEcCcCCcccccc
Q 006806 501 M--------TDARCSRCNECKVGLRDIIQAGHGDR---YQLECIACGHSWYAS 542 (630)
Q Consensus 501 m--------~~~~C~~C~~~k~~y~q~q~tRsADE---~Fv~C~~Cg~rWk~s 542 (630)
+ +.++|++||+++|+|+|+| +||||| +||.|.+|||+|+||
T Consensus 258 ~~~~~~~~~~~~~C~~C~~~~~~~~q~Q-~rsaDe~~t~f~~C~~Cg~~w~fc 309 (309)
T 1pqv_S 258 GATIERSVTDRFTCGKCKEKKVSYYQLQ-TRSADEPLTTFCTCEACGNRWKFS 309 (309)
T ss_pred hccccccCcccccCCCCCCCeeEEEEee-cccCCCCCcEEEEeCCCCCceecC
Confidence 5 3589999999999999999 999999 999999999999986
No 3
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.96 E-value=1.7e-29 Score=243.20 Aligned_cols=140 Identities=24% Similarity=0.443 Sum_probs=104.3
Q ss_pred ccccceeecCCCCCcceeeeeEEEcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEEecccccCCCCC
Q 006806 103 PVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRKGG 182 (630)
Q Consensus 103 ~iG~pvk~~gKG~~~r~~Y~sf~~dG~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPeEt~~~~~ 182 (630)
|.|.| |++.+++.||++|.++|..|+|||||||.+++.+.+||||+|.+||++.+|.++|+|+|||||+||.+...
T Consensus 3 ~~g~~----~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~ 78 (174)
T 1w4s_A 3 SSGSA----GLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLAT 78 (174)
T ss_dssp ---------------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTT
T ss_pred ccCCc----cccCCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccC
Confidence 44553 33445789999999999999999999999987668999999999999989999999999999999998665
Q ss_pred CCCCCCCCCeeEeeCCcccccccccceecEEEEcCccccC-CC-CCCCCceEEeeeeecCCcEEeecCC
Q 006806 183 GNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-PN-RKQHPGFIVQKVYDTVERKLWKLTD 249 (630)
Q Consensus 183 g~~~~~~~nELFlS~h~D~~plesIigKC~V~~i~ey~ql-P~-~~~~~~F~Cr~vYD~~~kkl~~l~d 249 (630)
+.+ ++||||+|+|++++|+++|+|||.|++..+|.++ |. ....+.|||+..||...++|..+..
T Consensus 79 ~~~---~~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i~~ 144 (174)
T 1w4s_A 79 RKF---LEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKL 144 (174)
T ss_dssp CEE---ETTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEECSS
T ss_pred CcC---CCCeeEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccCcc
Confidence 555 6999999999999999999999999999999775 32 2234789999999999999988765
No 4
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.93 E-value=7.3e-27 Score=211.26 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=89.5
Q ss_pred CCcChhhHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCcccccccccCCccccccCCCCCCCChhhHHHHHHH
Q 006806 345 ALTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTA 424 (630)
Q Consensus 345 ~lTgd~~RDK~le~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~v~~~A~~ 424 (630)
++|||++||||+++|++||....+.... ...+..+|.+
T Consensus 6 p~t~D~vRdk~~e~L~~aL~~~~~~~~~------------------------------------------~~~~~~~A~~ 43 (113)
T 2lw4_A 6 PVTCDAVRNKCREMLTAALQTDHDHVAI------------------------------------------GADCERLSAQ 43 (113)
T ss_dssp CCCCSTTHHHHHHHHHHHHHSSTHHHHH------------------------------------------TCCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCcccc------------------------------------------cchHHHHHHH
Confidence 4699999999999999999764432110 1245679999
Q ss_pred HHHHHHHHcCcChHHHHHHHHHHHHhcc--cCHHHHHHhhcCCCCccccccCChhhhcChHhHHHH
Q 006806 425 LEKASHDTLSLDFQKYNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKEGLTAEEM 488 (630)
Q Consensus 425 IE~alf~~~~~~~~kYk~KiRSL~fNLK--kNp~Lr~rVl~GeIsP~~La~Ms~eEMASdelkeer 488 (630)
||.+||..|++++.+|++|+|||+|||| +||+||++|++|+|+|++||.||++||||+|++++|
T Consensus 44 IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np~Lr~~vl~G~i~p~~l~~Ms~eEmAs~elk~~r 109 (113)
T 2lw4_A 44 IEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIR 109 (113)
T ss_dssp HHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSSHHHHHHHTTSSCHHHHHHSCHHHHHCTTTTTCS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHH
Confidence 9999999999888899999999999998 899999999999999999999999999999888665
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.92 E-value=6.1e-25 Score=258.06 Aligned_cols=141 Identities=20% Similarity=0.287 Sum_probs=121.9
Q ss_pred CccccccceeecCCCCCcceeeeeEEEcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEEecccccCC
Q 006806 100 DAKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADR 179 (630)
Q Consensus 100 ~a~~iG~pvk~~gKG~~~r~~Y~sf~~dG~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPeEt~~ 179 (630)
...|+|.|+ |+..++.+|+++.++|..|+|||||||.+++...+||||+|++||++.+|.+||+|+|||||+||.+
T Consensus 132 ~~~W~G~p~----k~~~~~~~Y~s~~v~g~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~l 207 (1002)
T 3swr_A 132 RISWVGEAV----KTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVL 207 (1002)
T ss_dssp CEEEESCCC----CCBTTEEECSEEEETTEEEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTT
T ss_pred cccccCccc----ccccCceeeeEEEECCEEEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhccc
Confidence 445999999 5555799999999999999999999999988778889999999999988999999999999999997
Q ss_pred CCCCCCCCCCCCeeEeeCCcccccccccceecEEEEcCcccc----------CC-CCCCCCceEEeeeeecCCcEEeecC
Q 006806 180 KGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQ----------LP-NRKQHPGFIVQKVYDTVERKLWKLT 248 (630)
Q Consensus 180 ~~~g~~~~~~~nELFlS~h~D~~plesIigKC~V~~i~ey~q----------lP-~~~~~~~F~Cr~vYD~~~kkl~~l~ 248 (630)
.. . ++++|||+|+||+++++++|+|||+|++...+.. .+ ....++.|||+..||...+.|.+|+
T Consensus 208 g~--~---~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp 282 (1002)
T 3swr_A 208 GA--T---SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPP 282 (1002)
T ss_dssp GG--G---SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEECCC
T ss_pred cc--C---CCCCceEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccCCC
Confidence 42 2 5899999999999999999999999999755111 11 1123689999999999999999997
Q ss_pred C
Q 006806 249 D 249 (630)
Q Consensus 249 d 249 (630)
.
T Consensus 283 ~ 283 (1002)
T 3swr_A 283 K 283 (1002)
T ss_dssp C
T ss_pred h
Confidence 6
No 6
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.91 E-value=5e-25 Score=197.79 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=82.6
Q ss_pred CCcChhhHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCcccccccccCCccccccCCCCCCCChhhHHHHHHH
Q 006806 345 ALTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTA 424 (630)
Q Consensus 345 ~lTgd~~RDK~le~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~v~~~A~~ 424 (630)
++|||++||||+++|++||+...+.... ...+..+|.+
T Consensus 10 ~~t~d~vR~k~~~lL~~aL~~~~d~~~~------------------------------------------~~~~~~lA~~ 47 (108)
T 3ndq_A 10 PSTSDSVRLKCREMLAAALRTGDDYIAI------------------------------------------GADEEELGSQ 47 (108)
T ss_dssp CCCCCHHHHHHHHHHHHHTTGGGHHHHH------------------------------------------TCCHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHcCCCCCcc------------------------------------------cccHHHHHHH
Confidence 3699999999999999999886532110 1256689999
Q ss_pred HHHHHHHHcCcChHHHHHHHHHHHHhcc--cCHHHHHHhhcCCCCccccccCChhhhcChH
Q 006806 425 LEKASHDTLSLDFQKYNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKEGL 483 (630)
Q Consensus 425 IE~alf~~~~~~~~kYk~KiRSL~fNLK--kNp~Lr~rVl~GeIsP~~La~Ms~eEMASde 483 (630)
||.+||..|++++.+|++|+|||+|||| +||+||++|++|+|+|++||.||++||||+|
T Consensus 48 IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~~vl~G~isp~~lv~Ms~eEmAS~E 108 (108)
T 3ndq_A 48 IEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDE 108 (108)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHHTCTTCHHHHHHHHHTSSCHHHHHHCCTTTC----
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCcCHHHHhCCCHHHccCCC
Confidence 9999999999888899999999999999 9999999999999999999999999999974
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.90 E-value=8.1e-24 Score=253.84 Aligned_cols=141 Identities=18% Similarity=0.309 Sum_probs=118.1
Q ss_pred CccccccceeecCCCCCcceeeeeEEEcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEEecccccCC
Q 006806 100 DAKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADR 179 (630)
Q Consensus 100 ~a~~iG~pvk~~gKG~~~r~~Y~sf~~dG~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPeEt~~ 179 (630)
+-.|+|+|++.. .+++||+++.++|.+|+|||||||.+++++.++|||+|++||++.+|..||+|+|||||+||.+
T Consensus 443 ~i~W~G~p~k~~----~~~~~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvl 518 (1330)
T 3av4_A 443 RISWLGQPMKIE----ENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVL 518 (1330)
T ss_dssp CEEEESSCSCCC------CEEECSEEEESSEEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTT
T ss_pred CceEccCceecc----CCceeeeEEEECCEEEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHccc
Confidence 345999988443 4699999999999999999999999887566789999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCeeEeeCCcccccccccceecEEEEcCc---cccC----CCC-----CCCCceEEeeeeecCCcEEeec
Q 006806 180 KGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPI---HKQL----PNR-----KQHPGFIVQKVYDTVERKLWKL 247 (630)
Q Consensus 180 ~~~g~~~~~~~nELFlS~h~D~~plesIigKC~V~~i~e---y~ql----P~~-----~~~~~F~Cr~vYD~~~kkl~~l 247 (630)
.. .++++|||+|+|+|++||++|+|||+|+++.. |..+ +.. .....|||+..||...++|++|
T Consensus 519 g~-----~~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~l 593 (1330)
T 3av4_A 519 GA-----TSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFESP 593 (1330)
T ss_dssp GG-----GSCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEECC
T ss_pred cc-----ccCCCeEEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCCc
Confidence 32 25999999999999999999999999999776 3221 111 2346899999999999999999
Q ss_pred CC
Q 006806 248 TD 249 (630)
Q Consensus 248 ~d 249 (630)
+.
T Consensus 594 p~ 595 (1330)
T 3av4_A 594 PK 595 (1330)
T ss_dssp CC
T ss_pred Cc
Confidence 76
No 8
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.4e-24 Score=193.49 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=91.5
Q ss_pred CcChhhHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCcccccccccCCccccccCCCCCCCChhhHHHHHHHH
Q 006806 346 LTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTAL 425 (630)
Q Consensus 346 lTgd~~RDK~le~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~v~~~A~~I 425 (630)
.++|.+||+|+++|+++|.......+. ... ...+..+|.+|
T Consensus 7 ~~~d~~Rd~~r~~L~eaL~~~~~~~~~--------------------------------------~~~-~~~~~~lA~~I 47 (120)
T 2dme_A 7 GSADQIRQSVRHSLKDILMKRLTDSNL--------------------------------------KVP-EEKAAKVATKI 47 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTTC--------------------------------------CCC-HHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhcccccc--------------------------------------ccc-hhHHHHHHHHH
Confidence 367999999999999999877653110 000 35678999999
Q ss_pred HHHHHHHcCcChHHHHHHHHHHHHhcc--cCHHHHHHhhcCCCCccccccCChhhhcChHhHHHHH
Q 006806 426 EKASHDTLSLDFQKYNQKLRQLLFNLK--STALLARRLLNGELEPSKILNMSPNELKEGLTAEEMA 489 (630)
Q Consensus 426 E~alf~~~~~~~~kYk~KiRSL~fNLK--kNp~Lr~rVl~GeIsP~~La~Ms~eEMASdelkeer~ 489 (630)
|.+||+.|++++.+|++|+|||+|||| +||.||++||+|+|+|++||.||++||||+|++++|+
T Consensus 48 E~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~~vl~G~i~p~~lv~Ms~eEmAS~elk~~r~ 113 (120)
T 2dme_A 48 EKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRR 113 (120)
T ss_dssp HHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHHHHHHHTSSCTTHHHHSCTTTTTTCCSTTTCT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHH
Confidence 999999999888899999999999998 9999999999999999999999999999999987764
No 9
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.82 E-value=2.7e-19 Score=170.09 Aligned_cols=141 Identities=22% Similarity=0.288 Sum_probs=110.8
Q ss_pred cccccceeecCCCCCcceeeeeEEE--cC---eEEeeCCeEEEcCCCCCCCCeEEEEeEEeeC---CCCceEEEEEEEec
Q 006806 102 KPVGELVRFSGKGRGRRSHYEAFEF--DG---NKYELEDPVLLTPEDTNQKPYVAIIKEITQS---KDGSMMVTGQWFYR 173 (630)
Q Consensus 102 ~~iG~pvk~~gKG~~~r~~Y~sf~~--dG---~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~---~dG~~~VrVqWFYR 173 (630)
.|+|.|+ ... +....+|+++.+ .| ..++|||||+|.+++ ...||||+|+.|+++ ....+.++||||||
T Consensus 8 sW~g~~l-~dr--kl~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D-~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R 83 (163)
T 4dov_A 8 SWVGRPL-PNR--KQFQQMYREICMKINDGSEIHIKVGQFVLIQGED-NKKPYVAKLIELFQNGAEVPPKKCARVQWFVR 83 (163)
T ss_dssp EEESCCC-CCC--CTTEEEESEEEEECTTSCEEEEETTCEEEECCSS-SSCCEEEEEEEEEEETTSSSCEEEEEEEEEEE
T ss_pred EEeccCc-CCC--cccceeeeEEEEecCCCCCeEEeeCCEEEEeCCc-ccCChhHHHHHHHhccccCCCceEEEEEeeec
Confidence 5888888 322 123568999988 56 899999999999887 578899999999985 23468899999999
Q ss_pred ccccCCCCCCCCC--CCCCCeeEeeCCcc---cccccccceecEEEEcCccccCCCC-CCCCceEEeeeeecCCcEEeec
Q 006806 174 PEEADRKGGGNWL--SRDTRELFYSFHRD---EVPAESVMHKCVVHFVPIHKQLPNR-KQHPGFIVQKVYDTVERKLWKL 247 (630)
Q Consensus 174 PeEt~~~~~g~~~--~~~~nELFlS~h~D---~~plesIigKC~V~~i~ey~qlP~~-~~~~~F~Cr~vYD~~~kkl~~l 247 (630)
|+|++... +.+. .++.+|||+++|.+ .+++++|+|+|.|+.+..+..+|.. ....+||.+..+|.. +|.-|
T Consensus 84 ~~EiP~~k-~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k--~f~pl 160 (163)
T 4dov_A 84 FLEIPVSK-RHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKK--DFAPL 160 (163)
T ss_dssp GGGSCTTT-GGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSS--CEEEC
T ss_pred hhhccccc-hhhccCCCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCC--cceeC
Confidence 99998521 1111 14689999999884 7899999999999999999999844 556899999999954 45555
Q ss_pred CC
Q 006806 248 TD 249 (630)
Q Consensus 248 ~d 249 (630)
++
T Consensus 161 ~~ 162 (163)
T 4dov_A 161 PP 162 (163)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 10
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.76 E-value=2.4e-18 Score=202.46 Aligned_cols=133 Identities=21% Similarity=0.284 Sum_probs=110.3
Q ss_pred cceeeeeEEEcCeEEeeCCeEEEcCCC-----------------------------------------CCCCCeEEEEeE
Q 006806 117 RRSHYEAFEFDGNKYELEDPVLLTPED-----------------------------------------TNQKPYVAIIKE 155 (630)
Q Consensus 117 ~r~~Y~sf~~dG~~YkVGD~VyV~~e~-----------------------------------------~~~~pyIArI~~ 155 (630)
++.+|.+|.++|..|+|||+|||.++. ...+++||+|.+
T Consensus 321 ~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~IgrI~~ 400 (1002)
T 3swr_A 321 SRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 400 (1002)
T ss_dssp SCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEEEEE
T ss_pred CcEEEEEEEECCEEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceeeEEeE
Confidence 478999999999999999999999832 123678999999
Q ss_pred EeeCCCCc-------eEEEEEEEecccccCCCCCCCCCCCCCCeeEeeCCcccccccccceecEEEEcCccccCC---CC
Q 006806 156 ITQSKDGS-------MMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLP---NR 225 (630)
Q Consensus 156 I~e~~dG~-------~~VrVqWFYRPeEt~~~~~g~~~~~~~nELFlS~h~D~~plesIigKC~V~~i~ey~qlP---~~ 225 (630)
||.+..+. .+|+|+|||||+||.+.. ......+.||||+|+|.+++|+.+|.|||.|++..++.... ..
T Consensus 401 i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~-~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~~~ 479 (1002)
T 3swr_A 401 IFCPKKSNGRPNETDIKIRVNKFYRPENTHKST-PASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSM 479 (1002)
T ss_dssp EEECCCSSSSCCSSCCEEEEEECBCGGGSTTCG-GGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHHHH
T ss_pred EEecCCccccCCCccEEEEEEEEECcccccccc-cccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchhhcc
Confidence 99766554 999999999999998533 22345689999999999999999999999999998886532 11
Q ss_pred CCCCceEEeeeeecCCcEEeecCCc
Q 006806 226 KQHPGFIVQKVYDTVERKLWKLTDK 250 (630)
Q Consensus 226 ~~~~~F~Cr~vYD~~~kkl~~l~dk 250 (630)
..++.|||..+||..++.|..++..
T Consensus 480 ~~p~~fyf~~~Yd~~~~~f~~~p~~ 504 (1002)
T 3swr_A 480 GGPNRFYFLEAYNAKSKSFEDPPNH 504 (1002)
T ss_dssp TSSSEEEEEEEEETTTTEEECCCST
T ss_pred CCCCeEEEEEEEeCCCCeeecCccc
Confidence 2458899999999999999987643
No 11
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.75 E-value=9.2e-19 Score=201.17 Aligned_cols=132 Identities=19% Similarity=0.316 Sum_probs=108.8
Q ss_pred cceeeeeEEEcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEEecccccCCCC----CCCCCCCCCCe
Q 006806 117 RRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRKG----GGNWLSRDTRE 192 (630)
Q Consensus 117 ~r~~Y~sf~~dG~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPeEt~~~~----~g~~~~~~~nE 192 (630)
.|+||.++.++|+.|+|||||||..+. +.++|||+|.+||++.+|..+|+|+|||||+||+... ...-..++.||
T Consensus 44 ~~~~~~~~~~~~~~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~ 122 (784)
T 4ft4_B 44 ARCHYRSAKVDNVVYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRR 122 (784)
T ss_dssp EEEECSEEEETTEEEETTCEEEECCST-TSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTB
T ss_pred cceeeeeeeECCEEEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccccce
Confidence 479999999999999999999999865 6788999999999999999999999999999998521 01123468999
Q ss_pred eEeeCCcccccccccceecEEEEcCccccCCC---CCCCCceEEeeeeecCCcEEeecCC
Q 006806 193 LFYSFHRDEVPAESVMHKCVVHFVPIHKQLPN---RKQHPGFIVQKVYDTVERKLWKLTD 249 (630)
Q Consensus 193 LFlS~h~D~~plesIigKC~V~~i~ey~qlP~---~~~~~~F~Cr~vYD~~~kkl~~l~d 249 (630)
||+|++++++++++|+|||+|+++....+++. ......|||.+.|......+..++.
T Consensus 123 ~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 182 (784)
T 4ft4_B 123 VFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISS 182 (784)
T ss_dssp EEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEEEC--
T ss_pred EEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCccCCCc
Confidence 99999999999999999999999887655431 1123569999999888877777654
No 12
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.72 E-value=6.7e-18 Score=202.98 Aligned_cols=132 Identities=23% Similarity=0.310 Sum_probs=108.7
Q ss_pred cceeeeeEEEcCeEEeeCCeEEEcCCC-----------------------------------------CCCCCeEEEEeE
Q 006806 117 RRSHYEAFEFDGNKYELEDPVLLTPED-----------------------------------------TNQKPYVAIIKE 155 (630)
Q Consensus 117 ~r~~Y~sf~~dG~~YkVGD~VyV~~e~-----------------------------------------~~~~pyIArI~~ 155 (630)
++.+|.+|.++|..|+|||||||.++. ...+++||+|.+
T Consensus 633 ~~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI~e 712 (1330)
T 3av4_A 633 GRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 712 (1330)
T ss_dssp SSEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEEEE
T ss_pred CceeeeEEEECCEEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEEEEE
Confidence 578999999999999999999998762 024568999999
Q ss_pred EeeCCC------CceEEEEEEEecccccCCCCCCCCCCCCCCeeEeeCCcccccccccceecEEEEcCccccC--C-CCC
Q 006806 156 ITQSKD------GSMMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL--P-NRK 226 (630)
Q Consensus 156 I~e~~d------G~~~VrVqWFYRPeEt~~~~~g~~~~~~~nELFlS~h~D~~plesIigKC~V~~i~ey~ql--P-~~~ 226 (630)
||.+.+ +..+|+|+|||||+||.+...+ ....+.||||+|++.+++|+++|.|||.|++..++... | ...
T Consensus 713 I~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~-~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~~ 791 (1330)
T 3av4_A 713 IHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNG-SYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQG 791 (1330)
T ss_dssp CCCCEETTEECSSCCEEEEEEEECTTTSTTGGGT-TTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHHT
T ss_pred EEecCCccccCCCceEEEEEEeeChhhccccccc-ccccCcceEEeeccceecCHHHcCceEEEEecccccccccccccC
Confidence 997654 5799999999999999864322 23468999999999999999999999999999887663 2 122
Q ss_pred CCCceEEeeeeecCCcEEeecCC
Q 006806 227 QHPGFIVQKVYDTVERKLWKLTD 249 (630)
Q Consensus 227 ~~~~F~Cr~vYD~~~kkl~~l~d 249 (630)
.++.|||+..||..++.|-.+|.
T Consensus 792 g~d~Fy~~~~Yd~~~k~~~~~P~ 814 (1330)
T 3av4_A 792 GPDRFYFLEAYNSKTKNFEDPPN 814 (1330)
T ss_dssp STTEEEESCEEETTTTEEECCCG
T ss_pred CCCeEEEEEEecccCCeeccCch
Confidence 46899999999999998865443
No 13
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.29 E-value=1.6e-12 Score=101.62 Aligned_cols=42 Identities=19% Similarity=0.482 Sum_probs=38.7
Q ss_pred ccCccccCCCCCCceEEEEeeeccCCCc---eEEEcCcCCcccccc
Q 006806 500 QMTDARCSRCNECKVGLRDIIQAGHGDR---YQLECIACGHSWYAS 542 (630)
Q Consensus 500 ~m~~~~C~~C~~~k~~y~q~q~tRsADE---~Fv~C~~Cg~rWk~s 542 (630)
+...+.|++|+++++.|+|+| +||||| +||.|.+|||+|+++
T Consensus 6 ~t~~~~Cp~Cg~~~a~f~q~Q-~RsaDE~mT~Fy~C~~Cg~~w~~~ 50 (50)
T 1tfi_A 6 QTDLFTCGKCKKKNCTYTQVQ-TRSADEPMTTFVVCNECGNRWKFC 50 (50)
T ss_dssp ECCCSCCSSSCSSCEEEEEEC-SSSSSSCCEEEEEESSSCCEEECC
T ss_pred eeCccCCCCCCCCEEEEEEec-CcCCCCCceEEEEcCCCCCeEEeC
Confidence 345689999999999999999 999999 999999999999974
No 14
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.18 E-value=1.4e-11 Score=123.23 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=91.7
Q ss_pred cCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC-CCceEEEEEEEecccccCC-------CCC-----CCCCC------
Q 006806 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK-DGSMMVTGQWFYRPEEADR-------KGG-----GNWLS------ 187 (630)
Q Consensus 127 dG~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~~-dG~~~VrVqWFYRPeEt~~-------~~~-----g~~~~------ 187 (630)
||..|++||+|.|..+. .+.+.|+.|..|.-+. +..+.+.|.||+|..|+.. .+. +...+
T Consensus 49 Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (232)
T 2fl7_A 49 DGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFF 127 (232)
T ss_dssp TCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHH
T ss_pred CCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhh
Confidence 89999999999998754 4556688888886654 5578999999999999964 111 11122
Q ss_pred --CCCCeeEeeCCcccccccccceecEEEEcCccccCC-CCCCCCceEEeeeeecCCcEEeecC
Q 006806 188 --RDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLP-NRKQHPGFIVQKVYDTVERKLWKLT 248 (630)
Q Consensus 188 --~~~nELFlS~h~D~~plesIigKC~V~~i~ey~qlP-~~~~~~~F~Cr~vYD~~~kkl~~l~ 248 (630)
...||||+|.+.+.+-+.+|+++|+|+...+|..+. +......||||+++|+...+|..+.
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD 191 (232)
T 2fl7_A 128 NEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPID 191 (232)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEECC
T ss_pred cccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCcccccc
Confidence 589999999999999999999999999999999863 2334689999999999877776553
No 15
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.17 E-value=1.1e-11 Score=124.48 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=98.8
Q ss_pred cCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC-CCceEEEEEEEecccccCC-------CCC-----CCCCC------
Q 006806 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK-DGSMMVTGQWFYRPEEADR-------KGG-----GNWLS------ 187 (630)
Q Consensus 127 dG~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~~-dG~~~VrVqWFYRPeEt~~-------~~~-----g~~~~------ 187 (630)
||..|++||+|.|..+. .+.+.|+.|..|.-+. ++.+.+.|.||+|..|+.. .+. +...+
T Consensus 49 Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (238)
T 1m4z_A 49 DGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFS 127 (238)
T ss_dssp TCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHHH
T ss_pred CCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhh
Confidence 89999999999998764 4566688888886654 5678899999999999964 111 11122
Q ss_pred --CCCCeeEeeCCcccccccccceecEEEEcCccccCC-CCCCCCceEEeeeeecCCcEEeecCCccc
Q 006806 188 --RDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLP-NRKQHPGFIVQKVYDTVERKLWKLTDKDY 252 (630)
Q Consensus 188 --~~~nELFlS~h~D~~plesIigKC~V~~i~ey~qlP-~~~~~~~F~Cr~vYD~~~kkl~~l~dkDy 252 (630)
...||||+|.+.+.+-+.+|+++|+|+...+|..+. +......||||+++|+....|..+.-.++
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~ 195 (238)
T 1m4z_A 128 ETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIEDV 195 (238)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECCHHHH
T ss_pred cccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCccccccHHHH
Confidence 589999999999999999999999999999998763 22456899999999998777776533333
No 16
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.06 E-value=7.6e-11 Score=93.95 Aligned_cols=42 Identities=24% Similarity=0.625 Sum_probs=38.2
Q ss_pred ccCccccCCCCCCceEEEEeeeccCCCc---eEEEcCcCCcccccc
Q 006806 500 QMTDARCSRCNECKVGLRDIIQAGHGDR---YQLECIACGHSWYAS 542 (630)
Q Consensus 500 ~m~~~~C~~C~~~k~~y~q~q~tRsADE---~Fv~C~~Cg~rWk~s 542 (630)
..+.+.|++||+.++.|+|+| +||||| +||.|.+|||+|+..
T Consensus 12 ~~~~~~Cp~Cg~~~~~~~q~Q-~rsadep~T~fy~C~~Cg~~w~~~ 56 (57)
T 1qyp_A 12 PTTKITCPKCGNDTAYWWEMQ-TRAGDEPSTIFYKCTKCGHTWRSY 56 (57)
T ss_dssp CEEECCCTTTCCSEEEEEEEC-CSSSSCSSEEEEEESSSCCEEECC
T ss_pred CceEeECCCCCCCEEEEEEee-cccCCCCCcEEEEcCCCCCEeccC
Confidence 335789999999999999999 999999 999999999999864
No 17
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.89 E-value=7.4e-10 Score=99.94 Aligned_cols=39 Identities=23% Similarity=0.633 Sum_probs=36.8
Q ss_pred CccccCCCCCCceEEEEeeeccCCCc---eEEEcCcCCccccc
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDR---YQLECIACGHSWYA 541 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE---~Fv~C~~Cg~rWk~ 541 (630)
+.+.|++||++++.|+|+| +||||| +||.|.+|||+|+.
T Consensus 71 ~~~~Cp~C~~~~a~~~q~q-~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 71 SDKECPRCHQHEAVFYQTH-SRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp CCSCCSSSCCSCEEEECCC-CSSCCCCCCCEEEESSSCCCCCC
T ss_pred cccCCCCCCCceEEEEEEe-cccCCCCCeeEEEcCCCCCEEec
Confidence 5689999999999999999 999999 99999999999984
No 18
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=98.86 E-value=1e-09 Score=100.29 Aligned_cols=40 Identities=18% Similarity=0.485 Sum_probs=37.7
Q ss_pred CccccCCCCCCceEEEEeeeccCCCc---eEEEcCcCCcccccc
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDR---YQLECIACGHSWYAS 542 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE---~Fv~C~~Cg~rWk~s 542 (630)
+.+.|++||++++.|+|+| +||||| +||.|.+|||+|+.+
T Consensus 71 t~~~Cp~C~~~~a~~~q~q-~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 71 SDRECPKCHSRENVFFQSQ-QRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCCCTTTCCCCEEEEECS-SCCTTCCCCEEEEETTTCCEEECC
T ss_pred cCCCCCCCCCCEEEEEEec-CccCCCCceEEEEeCCCCCEeccC
Confidence 5789999999999999999 999999 999999999999864
No 19
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.3e-09 Score=101.09 Aligned_cols=39 Identities=23% Similarity=0.669 Sum_probs=0.0
Q ss_pred CccccCCCCCCceEEEEeeeccCCCc---eEEEcCcCCccccc
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDR---YQLECIACGHSWYA 541 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE---~Fv~C~~Cg~rWk~ 541 (630)
+.+.|++|+++++.|+|+| +||||| +||.|.+|||+|+.
T Consensus 91 t~~~CpkCg~~~a~f~q~Q-~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 91 SDRECPKCHSRENVFFQLQ-IRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -------------------------------------------
T ss_pred ccCCCCCCCCceEEEEEEe-eecCCCCCcEEEEcCCCCCEeCc
Confidence 4689999999999999999 999999 99999999999985
No 20
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=81.64 E-value=1 Score=32.57 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=23.3
Q ss_pred cccCCCCCCceEEEEeeeccCCCc-eEEEcCcCCcccc
Q 006806 504 ARCSRCNECKVGLRDIIQAGHGDR-YQLECIACGHSWY 540 (630)
Q Consensus 504 ~~C~~C~~~k~~y~q~q~tRsADE-~Fv~C~~Cg~rWk 540 (630)
+.|+.|++.++.+.-. +. .|..|..||+++-
T Consensus 1 VlC~~C~~peT~l~~~------~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 1 VICRECGKPDTKIIKE------GRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCCSSSCSCEEEEEEE------TTEEEEEEETTTEEEE
T ss_pred CCCcCCCCCCcEEEEe------CCcEEEEhhcCCCccc
Confidence 4699999998654321 23 8899999998875
No 21
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=77.90 E-value=0.74 Score=42.46 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=24.2
Q ss_pred cccC-ccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 499 MQMT-DARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 499 ~~m~-~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
..|. .-.|++|...- +| +.+ ..|.|..|+|.|.
T Consensus 22 ~~M~~lP~CP~C~sey-tY-eDg-------~l~vCPeC~hEW~ 55 (138)
T 2akl_A 22 HMVSTLPPCPQCNSEY-TY-EDG-------ALLVCPECAHEWS 55 (138)
T ss_dssp -CCCCSCCCTTTCCCC-CE-ECS-------SSEEETTTTEEEC
T ss_pred cccccCCCCCCCCCcc-eE-ecC-------CeEECCccccccC
Confidence 3453 46899999864 33 444 6899999999996
No 22
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=76.81 E-value=1.8 Score=45.15 Aligned_cols=50 Identities=20% Similarity=0.398 Sum_probs=32.9
Q ss_pred CccccCCCCCCceEEEEeeeccCCCc--eEEEcCcCCccccccc---------ccccceeecC
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDR--YQLECIACGHSWYASR---------DEASSLTIDG 553 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE--~Fv~C~~Cg~rWk~sr---------d~~s~l~~~~ 553 (630)
..-.|+-||.. .....+. .+...+ .|..|.-||+.|.+-| +.+..++++.
T Consensus 181 ~~~~CPvCGs~-P~~s~l~-~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~~~e~ 241 (309)
T 2fiy_A 181 SRTLCPACGSP-PMAGMIR-QGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEH 241 (309)
T ss_dssp TCSSCTTTCCC-EEEEEEE-C----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEECCCC
T ss_pred cCCCCCCCCCc-CceeEEe-ecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEEEecC
Confidence 35679999986 4455444 323233 8999999999999544 4566666663
No 23
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=72.99 E-value=1.2 Score=37.97 Aligned_cols=29 Identities=17% Similarity=0.568 Sum_probs=25.8
Q ss_pred ccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcc
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHS 538 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~r 538 (630)
+++|+.|++-.+-|...| +.|.|..||..
T Consensus 32 ~VkCp~C~n~q~VFShA~-------t~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQ-------STIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEETTCS-------SCEECSSSCCE
T ss_pred EeECCCCCCeeEEEecCc-------cEEEccCCCCE
Confidence 579999999988888888 89999999964
No 24
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=72.09 E-value=0.96 Score=37.08 Aligned_cols=30 Identities=23% Similarity=0.604 Sum_probs=26.3
Q ss_pred ccccCCCCCCceEEEEeeeccCCCceEEEcCcCCccc
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSW 539 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rW 539 (630)
+++|+.|++..+-|...| +-|.|..||..-
T Consensus 7 ~VKCp~C~niq~VFShA~-------tvV~C~~Cg~~L 36 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPS-------TIVKCIICGRTV 36 (66)
T ss_dssp EEECTTTCCEEEEESSCS-------SCEECSSSCCEE
T ss_pred EEECCCCCCceEEEecCc-------eEEEcccCCCEE
Confidence 579999999998888888 899999999643
No 25
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.59 E-value=1.5 Score=35.63 Aligned_cols=29 Identities=17% Similarity=0.643 Sum_probs=25.6
Q ss_pred ccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcc
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHS 538 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~r 538 (630)
+++|+.|++..+-|...| +-+.|..||..
T Consensus 15 ~VkCp~C~~~q~VFSha~-------t~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPA-------TKVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEESSCS-------SCEECSSSCCE
T ss_pred EEECCCCCCeeEEEecCC-------eEEEccCcCCE
Confidence 589999999988888888 89999999954
No 26
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=63.63 E-value=1.5 Score=37.31 Aligned_cols=29 Identities=17% Similarity=0.487 Sum_probs=26.0
Q ss_pred ccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcc
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHS 538 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~r 538 (630)
+++|+.|++..+-|...| +-|.|..||..
T Consensus 34 ~VkCp~C~~~q~VFSha~-------t~V~C~~Cg~~ 62 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQ-------TAVTCESCSTI 62 (82)
T ss_dssp EEECTTSCSCEEEESBCS-------SCCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCC-------eEEEccccCCE
Confidence 689999999998888888 89999999954
No 27
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=63.23 E-value=1.1 Score=38.42 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=26.2
Q ss_pred ccccCCCCCCceEEEEeeeccCCCceEEEcCcCCccc
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSW 539 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rW 539 (630)
+++|+.|++..+-|...| +.|.|..||..-
T Consensus 36 ~VkCp~C~~~~~VFShA~-------t~V~C~~CgtvL 65 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQ-------TVVVCPGCQTVL 65 (86)
T ss_dssp EEECTTTCCEEEEETTCS-------SCCCCSSSCCCC
T ss_pred EEECCCCCCeeEEEecCC-------cEEEccCCCCEe
Confidence 589999999988888888 899999999543
No 28
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=53.05 E-value=4.2 Score=34.63 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=25.0
Q ss_pred hhhhcccCccccCCCCCCceEEEEeeeccCCCceEEEcCcCCccc
Q 006806 495 ESEQMQMTDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSW 539 (630)
Q Consensus 495 ~i~~~~m~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rW 539 (630)
+|...|-..+.|+.||... .+.... -...|..||+.+
T Consensus 19 ~ie~~q~~~y~Cp~CG~~~-v~r~at-------GiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 19 EIESEMNEDHACPNCGEDR-VDRQGT-------GIWQCSYCDYKF 55 (83)
T ss_dssp HHHHHHHSCEECSSSCCEE-EEEEET-------TEEEETTTCCEE
T ss_pred HHHHhccccCcCCCCCCcc-eeccCC-------CeEECCCCCCEe
Confidence 4444455688999999753 333333 478999999864
No 29
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=52.25 E-value=6.8 Score=29.51 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=21.4
Q ss_pred ccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
.+.|+.|+.....|..-. .-+.|..||.-+-
T Consensus 5 ~~~CP~C~~~~l~~d~~~-------gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELIYDPER-------GEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEEEETTT-------TEEEESSSCCBCC
T ss_pred cEeCcCCCCcceEEcCCC-------CeEECcccCCccc
Confidence 467999998554442221 4589999998775
No 30
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=46.87 E-value=11 Score=36.05 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=32.3
Q ss_pred cccCCCCCCceEEEEeeeccCCCc-eEEEcCcCCcccccc-cccccceeecCCC
Q 006806 504 ARCSRCNECKVGLRDIIQAGHGDR-YQLECIACGHSWYAS-RDEASSLTIDGPG 555 (630)
Q Consensus 504 ~~C~~C~~~k~~y~q~q~tRsADE-~Fv~C~~Cg~rWk~s-rd~~s~l~~~~~~ 555 (630)
+.|+.|+.+.+.+.-- +-+. .|..|..||.+--.. +.-+++.-+..|.
T Consensus 97 VlC~~C~sPdT~L~k~----~~~r~~~l~C~ACGa~~~V~~~~kl~t~i~knpp 146 (170)
T 2g2k_A 97 VLCPECENPETDLHVN----PKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPP 146 (170)
T ss_dssp HSCTTTSSSCEEEEEE----TTTTEEEEEETTTCCCCCSCSSSSHHHHHHTSCC
T ss_pred EECCCCCCCccEEEEe----cCCCEEEEEccccCCccccccccceeeeeeecCC
Confidence 6799999998654321 1244 889999999776543 5556666665443
No 31
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.78 E-value=14 Score=35.00 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=30.1
Q ss_pred ccccCCCCCCceEEEEeeeccCCCc-eEEEcCcCCccccc-ccccccceeec
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDR-YQLECIACGHSWYA-SRDEASSLTID 552 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE-~Fv~C~~Cg~rWk~-srd~~s~l~~~ 552 (630)
-+.|+.|+...+.+.-. .-+. .|..|..||.+--. .|.-+++.-|.
T Consensus 103 YVlC~~C~sPdT~L~~~----~~~r~~~l~C~ACGa~~~V~~~~Kl~~~i~k 150 (157)
T 2e9h_A 103 FVLCPECENPETDLHVN----PKKQTIGNSCKACGYRGMLDTHHKLCTFILK 150 (157)
T ss_dssp TTSCTTTCCSCCEEEEE----TTTTEEEEECSSSCCEEECCCCSSHHHHHHH
T ss_pred eEECCCCCCCccEEEEe----cCCCEEEEEccCCCCCCcccchhhhhhhhhc
Confidence 36799999998754321 2244 88999999976643 24455544444
No 32
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=43.46 E-value=3.7 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=17.3
Q ss_pred ccccCCCCCCceEEEEeeeccCCCceEEEcCcCCccc
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSW 539 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rW 539 (630)
-+.|.+||.. .++.++-.. --+.|..||++-
T Consensus 3 iY~C~rCg~~-fs~~el~~l-----P~IrCpyCGyri 33 (48)
T 4ayb_P 3 VYRCGKCWKT-FTDEQLKVL-----PGVRCPYCGYKI 33 (48)
T ss_dssp --CCCCTTTT-CCCCCSCCC-----SSSCCTTTCCSC
T ss_pred EEEeeccCCC-ccHHHHhhC-----CCcccCccCcEE
Confidence 4678888854 443333200 236888888774
No 33
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=43.31 E-value=30 Score=29.52 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=25.9
Q ss_pred CccccCCCCCCceEEEEeeeccCCCceEEEcCcCCccccc
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWYA 541 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk~ 541 (630)
+.|.|+.|++.++---.+- +..---.+.|..||.++..
T Consensus 22 t~F~CPfCnh~~sV~vkid--k~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMD--RARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEE--TTTTEEEEEESSSCCEEEE
T ss_pred CeEcCCCCCCCCeEEEEEE--ccCCEEEEEcccCCCeEEe
Confidence 5799999999864333332 3222277899999987753
No 34
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.04 E-value=15 Score=31.41 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=26.9
Q ss_pred chhhhcccCccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 494 DESEQMQMTDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 494 e~i~~~~m~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
.+|...|.....|+.|++..+. |.|- -...|..||..|-
T Consensus 26 kkie~~q~~ky~CpfCGk~~vk-------R~a~-GIW~C~kCg~~~A 64 (83)
T 3j21_i 26 AAVEAKMRQKHTCPVCGRKAVK-------RIST-GIWQCQKCGATFA 64 (83)
T ss_dssp HHHHHHHHSCBCCSSSCSSCEE-------EEET-TEEEETTTCCEEE
T ss_pred HHHHHHhhcccCCCCCCCceeE-------ecCc-CeEEcCCCCCEEe
Confidence 3555556678899999988643 2111 4678999998763
No 35
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=41.98 E-value=9 Score=35.93 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=23.2
Q ss_pred cccCCCCCCceEEEEeeeccCCCc-eEEEcCcCCcccc
Q 006806 504 ARCSRCNECKVGLRDIIQAGHGDR-YQLECIACGHSWY 540 (630)
Q Consensus 504 ~~C~~C~~~k~~y~q~q~tRsADE-~Fv~C~~Cg~rWk 540 (630)
+.|+.|+++.+.+ . + -+. .|..|..||.+.-
T Consensus 105 VlC~~C~sPdT~L---~--k-~~r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 105 VICPVCGSPDTKI---I--K-RDRFHFLKCEACGAETP 136 (148)
T ss_dssp SSCSSSCCTTCCC---C--B-SSSSBCCCCSSSCCCCC
T ss_pred EECCCCCCcCcEE---E--E-eCCEEEEEecCCCCCcc
Confidence 7899999998643 2 2 234 8899999997653
No 36
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=40.23 E-value=64 Score=27.28 Aligned_cols=65 Identities=12% Similarity=0.238 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCcccccccccCCccccccCCCCCCCChhhHHHHHHHHHHH
Q 006806 349 ETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTALEKA 428 (630)
Q Consensus 349 d~~RDK~le~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~v~~~A~~IE~a 428 (630)
...|+..+++|+++|-...+.... ++.. -..++..|..+|..
T Consensus 12 ~~lR~hlv~Klv~aI~P~pdp~a~-----------------------------------~d~r---m~~l~~yArkvE~~ 53 (81)
T 1kdx_A 12 QDLRSHLVHKLVQAIFPTPDPAAL-----------------------------------KDRR---MENLVAYAKKVEGD 53 (81)
T ss_dssp HHHHHHHHHHHHHHHSCCSSGGGG-----------------------------------GSHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhh-----------------------------------hhHH---HHHHHHHHHHHHHH
Confidence 678999999999998665432111 0000 34678899999999
Q ss_pred HHHHcCcChHHHHHHHHHHHHhcc
Q 006806 429 SHDTLSLDFQKYNQKLRQLLFNLK 452 (630)
Q Consensus 429 lf~~~~~~~~kYk~KiRSL~fNLK 452 (630)
+|+.-. +...|=.-+--.+.+|+
T Consensus 54 ~ye~A~-srdeYY~llA~kiykiq 76 (81)
T 1kdx_A 54 MYESAN-SRDEYYHLLAEKIYKIQ 76 (81)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHH
Confidence 998764 45578777777777764
No 37
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=39.64 E-value=19 Score=30.01 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=26.2
Q ss_pred chhhhcccCccccCCCCCCceEEEEeeeccCCCceEEEcCcCCccc
Q 006806 494 DESEQMQMTDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSW 539 (630)
Q Consensus 494 e~i~~~~m~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rW 539 (630)
.+|...|-....|+.|++..+. +..- -...|..||..|
T Consensus 18 kkie~~q~~ky~C~fCgk~~vk-R~a~-------GIW~C~~C~~~~ 55 (73)
T 1ffk_W 18 RDVEIKHKKKYKCPVCGFPKLK-RAST-------SIWVCGHCGYKI 55 (73)
T ss_pred HHHHHhcccCccCCCCCCceeE-EEEe-------EEEECCCCCcEE
Confidence 4555556678899999976553 1211 467999999875
No 38
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=38.93 E-value=18 Score=31.37 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=26.5
Q ss_pred chhhhcccCccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 494 DESEQMQMTDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 494 e~i~~~~m~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
.+|...|-....|+.||+..+. |.|- -...|..||..|-
T Consensus 27 kkie~~q~~ky~CpfCgk~~vk-------R~a~-GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 27 KKMEVSQHSKYFCEFCGKFAVK-------RKAV-GIWGCKDCGKVKA 65 (92)
T ss_dssp HHHHHHHHSCBCCTTTCSSCBE-------EEET-TEEECSSSCCEEE
T ss_pred HHHHHHHhccccCcccCCCeeE-------ecCc-ceEEcCCCCCEEe
Confidence 3455556677899999988653 2111 4678999998763
No 39
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.60 E-value=14 Score=30.02 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=20.5
Q ss_pred CccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
..+.|++||... . .... .-+.|..||||--
T Consensus 20 v~Y~C~~Cg~~~-~------l~~~--~~iRC~~CG~RIL 49 (63)
T 3h0g_L 20 MIYLCADCGARN-T------IQAK--EVIRCRECGHRVM 49 (63)
T ss_dssp CCCBCSSSCCBC-C------CCSS--SCCCCSSSCCCCC
T ss_pred eEEECCCCCCee-e------cCCC--CceECCCCCcEEE
Confidence 358899999653 2 1211 4588999999864
No 40
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=38.10 E-value=8.8 Score=39.12 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=5.6
Q ss_pred hhhhhccccccc
Q 006806 40 SKRKRIKLQEEE 51 (630)
Q Consensus 40 ~~~~~~~~~~~~ 51 (630)
...+.++|.+.+
T Consensus 330 ~~~~~~~l~~~d 341 (386)
T 2ca6_A 330 STRGRGELDELD 341 (386)
T ss_dssp HHHTCCEECCCC
T ss_pred hhcCcchhhhcc
Confidence 444455554433
No 41
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=35.09 E-value=22 Score=30.84 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=26.5
Q ss_pred chhhhcccCccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 494 DESEQMQMTDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 494 e~i~~~~m~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
.+|...|-....|+.|++..+. |.|- -...|..||..|-
T Consensus 27 kkie~~q~~ky~CpfCgk~~vk-------R~a~-GIW~C~~C~~~~A 65 (92)
T 3izc_m 27 KKLEIQQHARYDCSFCGKKTVK-------RGAA-GIWTCSCCKKTVA 65 (92)
T ss_dssp HHHHHHHHSCCCCSSSCSSCCE-------EEET-TEEECTTTCCEEE
T ss_pred HHHHHHHhcCCcCCCCCCceee-------eccc-ceEEcCCCCCEEe
Confidence 3555556678899999987653 2111 3678999998763
No 42
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=33.83 E-value=13 Score=34.40 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=22.1
Q ss_pred cccCCCCCCceEEEEeeeccCCCc-eEEEcCcCCcc
Q 006806 504 ARCSRCNECKVGLRDIIQAGHGDR-YQLECIACGHS 538 (630)
Q Consensus 504 ~~C~~C~~~k~~y~q~q~tRsADE-~Fv~C~~Cg~r 538 (630)
+.|+.|+++.+.+..- +. .|..|..||.+
T Consensus 103 VlC~~C~sPdT~l~k~------~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIRE------GRISLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEE------TTTTEEECSTTSCC
T ss_pred EECCCCCCcCcEEEEc------CCeEEEEccCCCCC
Confidence 6799999998754321 24 89999999964
No 43
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.37 E-value=14 Score=30.35 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=31.4
Q ss_pred CccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccccccccccceeec
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWYASRDEASSLTID 552 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk~srd~~s~l~~~ 552 (630)
.-..|+.|++. -.|. .++....|..|| .++.=+|-|-+|..+
T Consensus 7 eiL~CP~ck~~-L~~~-------~~~~~LiC~~cg-~~YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 7 DILACPICKGP-LKLS-------ADKTELISKGAG-LAYPIRDGIPVMLES 48 (69)
T ss_dssp GTCCCTTTCCC-CEEC-------TTSSEEEETTTT-EEEEEETTEECCCGG
T ss_pred hheeCCCCCCc-CeEe-------CCCCEEEcCCCC-cEecCcCCeeeeChh
Confidence 34689999975 3332 123678899998 777889999998877
No 44
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=32.28 E-value=21 Score=33.59 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=31.2
Q ss_pred cCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCC---CceEEEEEEE
Q 006806 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKD---GSMMVTGQWF 171 (630)
Q Consensus 127 dG~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~~d---G~~~VrVqWF 171 (630)
+|..|.+||.|..+-. +-+.|-|+|........ ..-.+.|+||
T Consensus 13 dg~~f~~GDLVWaKvk--G~PwWPa~V~~~~~~~k~~~~~~~~~V~FF 58 (154)
T 3llr_A 13 DGRGFGIGELVWGKLR--GFSWWPGRIVSWWMTGRSRAAEGTRWVMWF 58 (154)
T ss_dssp SSCCCCTTCEEEECCT--TSCCEEEEEECGGGTTSCCCCTTEEEEEET
T ss_pred cCCCCccCCEEEEecC--CCCCCCEEEecccccccccCCCCEEEEEEe
Confidence 7889999999999874 48999999998753211 1234556665
No 45
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=32.27 E-value=17 Score=29.75 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=31.0
Q ss_pred ccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccccccccccceeec
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWYASRDEASSLTID 552 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk~srd~~s~l~~~ 552 (630)
-..|+.|++. -.|.. ++....|..|| .++.=+|-|-+|..+
T Consensus 8 iL~CP~ck~~-L~~~~-------~~~~LiC~~cg-~~YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 8 ILVCPLCKGP-LVFDK-------SKDELICKGDR-LAFPIKDGIPMMLES 48 (68)
T ss_dssp ECBCTTTCCB-CEEET-------TTTEEEETTTT-EEEEEETTEECCCGG
T ss_pred heECCCCCCc-CeEeC-------CCCEEEcCCCC-cEecCCCCeeeeChh
Confidence 4689999975 44432 23667899998 777889999998877
No 46
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.03 E-value=17 Score=29.74 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=31.4
Q ss_pred CccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccccccccccceeec
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWYASRDEASSLTID 552 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk~srd~~s~l~~~ 552 (630)
.-..|+.|++. -.|.. ++....|..|| .++.=+|-|-+|..+
T Consensus 7 ~iL~CP~ck~~-L~~~~-------~~~~LiC~~cg-~~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 7 DILVCPVTKGR-LEYHQ-------DKQELWSRQAK-LAYPIKDGIPYMLEN 48 (68)
T ss_dssp CCCBCSSSCCB-CEEET-------TTTEEEETTTT-EEEEEETTEECCCTT
T ss_pred hheECCCCCCc-CeEeC-------CCCEEEcCCCC-cEecCCCCeeeeChh
Confidence 44789999975 44432 22667899998 777889999998866
No 47
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=30.12 E-value=22 Score=31.52 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=26.0
Q ss_pred chhhhcccCccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 494 DESEQMQMTDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 494 e~i~~~~m~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
.+|...|-....|+.||+..+. |.|- -...|..||..|-
T Consensus 27 kkIE~~q~aky~CpfCgk~~vK-------R~a~-GIW~C~kCg~~~A 65 (103)
T 4a17_Y 27 KKFEITQHAKYGCPFCGKVAVK-------RAAV-GIWKCKPCKKIIA 65 (103)
T ss_dssp HHHHHHHHSCEECTTTCCEEEE-------EEET-TEEEETTTTEEEE
T ss_pred HHHHHHhhcCCCCCCCCCceee-------ecCc-ceEEcCCCCCEEe
Confidence 3455556677899999977542 2111 3678999998764
No 48
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=29.37 E-value=12 Score=34.75 Aligned_cols=30 Identities=23% Similarity=0.641 Sum_probs=19.0
Q ss_pred ccccCCCCCCceEEEEeeeccCCCc-eEEEcCcCCcc
Q 006806 503 DARCSRCNECKVGLRDIIQAGHGDR-YQLECIACGHS 538 (630)
Q Consensus 503 ~~~C~~C~~~k~~y~q~q~tRsADE-~Fv~C~~Cg~r 538 (630)
-+.|+.|+++.+. +. + -+. .|..|..||.+
T Consensus 103 yVlC~~C~sPdT~---l~--k-~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKSLDTI---LK--K-EKKSWYIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSSSCCC---SC--S-SCSTTTSSCCC----
T ss_pred eeECCCCCCcCcE---EE--E-eCCeEEEEecCCCCC
Confidence 3789999999864 32 2 234 88999999964
No 49
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=29.17 E-value=19 Score=29.60 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=18.7
Q ss_pred CccccCCCCCCceEEEEeeeccCCCceEEEcCcCCccc
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSW 539 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rW 539 (630)
..+.|+.||..- . ....|. +.|..||+|-
T Consensus 27 v~Y~C~~CG~~~-e------~~~~d~--irCp~CG~RI 55 (70)
T 1twf_L 27 LKYICAECSSKL-S------LSRTDA--VRCKDCGHRI 55 (70)
T ss_dssp CCEECSSSCCEE-C------CCTTST--TCCSSSCCCC
T ss_pred EEEECCCCCCcc-e------eCCCCC--ccCCCCCceE
Confidence 457899999652 1 222233 4799999953
No 50
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.67 E-value=24 Score=28.91 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=31.2
Q ss_pred CccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccccccccccceeec
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWYASRDEASSLTID 552 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk~srd~~s~l~~~ 552 (630)
.-..|+.|++. -.|.. ++....|..|| .++.=+|-|-+|..+
T Consensus 7 ~iL~CP~ck~~-L~~~~-------~~~~LiC~~cg-~~YPI~dGIPvmL~~ 48 (70)
T 2js4_A 7 DILVCPVCKGR-LEFQR-------AQAELVCNADR-LAFPVRDGVPIMLEA 48 (70)
T ss_dssp CCCBCTTTCCB-EEEET-------TTTEEEETTTT-EEEEEETTEECCCGG
T ss_pred hheECCCCCCc-CEEeC-------CCCEEEcCCCC-ceecCCCCeeeeChh
Confidence 45789999984 44332 23567899999 777788999888877
No 51
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=28.62 E-value=24 Score=29.32 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=29.3
Q ss_pred cCCchhhhcccCccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 491 KEPDESEQMQMTDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 491 ~~~e~i~~~~m~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
+.-.+|...|-....|+.|++..+ .|.|- -...|..||..|-
T Consensus 14 K~vkkie~~q~~ky~C~fCgk~~v-------kR~a~-GIW~C~~C~~~~A 55 (72)
T 3jyw_9 14 RQVKKLEIQQHARYDCSFCGKKTV-------KRGAA-GIWTCSCCKKTVA 55 (72)
T ss_dssp TTTHHHHHHHHSCBCCSSCCSSCB-------SBCSS-SCBCCSSSCCCCC
T ss_pred HHHHHHHHHhccCccCCCCCCcee-------EecCC-CeEECCCCCCEEe
Confidence 445566666778899999998764 24332 3568999997763
No 52
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.43 E-value=31 Score=31.17 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=31.6
Q ss_pred EcCeEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC-----CC-ceEEEEEEEe
Q 006806 126 FDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK-----DG-SMMVTGQWFY 172 (630)
Q Consensus 126 ~dG~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~~-----dG-~~~VrVqWFY 172 (630)
.+|..|.+||.|..+-. +-+.|-|+|...-... .| ...+.|+||-
T Consensus 18 ~~~~~~~~GdlVwaK~~--g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg 68 (134)
T 2gfu_A 18 PTSSDFSPGDLVWAKME--GYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFD 68 (134)
T ss_dssp CSSCCCCTTSEEEECCT--TSCCEEEECCCCSSTTCCEEESSSCEEEEEEECS
T ss_pred CcCCCCCCCCEEEEeec--CCCCCCeeecchhhhhhhhhccCCCceEEEEECC
Confidence 46789999999999875 4889999998764321 11 2356666664
No 53
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.01 E-value=20 Score=28.15 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=19.5
Q ss_pred cccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 504 ARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 504 ~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
..|+.|+.....|-. ..--+.|..||.-..
T Consensus 12 ~~Cp~C~~~~lv~D~-------~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVEDY-------RAGDMICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEECS-------SSCCEECTTTCCEEC
T ss_pred ccCcCCCCCceeEeC-------CCCeEEeCCCCCEEe
Confidence 479999986543211 114589999996554
No 54
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=26.70 E-value=79 Score=25.56 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=36.4
Q ss_pred EEEEEEecccccCCCCCCCCCCCCCCeeEeeCCcccccccccceecEEEEc
Q 006806 166 VTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFV 216 (630)
Q Consensus 166 VrVqWFYRPeEt~~~~~g~~~~~~~nELFlS~h~D~~plesIigKC~V~~i 216 (630)
|.|.=+-|..||.-... +..+..||......+-.++-.|.|++.|+..
T Consensus 13 V~VigltRg~dtkfhht---EkLdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHS---EKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCCCE---EEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccchhh---hccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 66666778888842222 2248999999999999999999999999863
No 55
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=25.67 E-value=32 Score=31.08 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=24.1
Q ss_pred hhhhcccCccccCCCCCCceEEEEeeeccCCCceEEEcCcCCccc
Q 006806 495 ESEQMQMTDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSW 539 (630)
Q Consensus 495 ~i~~~~m~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rW 539 (630)
+|...|-....|+.||+..+. |.|- -...|..||..|
T Consensus 52 kiE~~q~akytCPfCGk~~vK-------R~av-GIW~C~~Cgk~f 88 (116)
T 3cc2_Z 52 EIESEMNEDHACPNCGEDRVD-------RQGT-GIWQCSYCDYKF 88 (116)
T ss_dssp HHHHHHHSCEECSSSCCEEEE-------EEET-TEEEETTTCCEE
T ss_pred HHHHHhccCCcCCCCCCceeE-------ecCc-eeEECCCCCCEE
Confidence 444445567889999975331 2111 367899999875
No 56
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=24.74 E-value=42 Score=28.58 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=34.2
Q ss_pred eeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEEeccc
Q 006806 132 ELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPE 175 (630)
Q Consensus 132 kVGD~VyV~~e~~~~~pyIArI~~I~e~~dG~~~VrVqWFYRPe 175 (630)
.+||.+.|....-..+...|.|+++.-. +|..=+.|+|+--..
T Consensus 7 ~vGDrlvv~g~~vg~~~R~GeIvEV~g~-dG~PPY~VRw~ddGH 49 (83)
T 2a7y_A 7 KVGDYLVVKGTTTERHDQHAEIIEVRSA-DGSPPYVVRWLVNGH 49 (83)
T ss_dssp CTTEEEEESCTTTSCCEEEEEEEECSCS-SSCSCEEEEETTTTE
T ss_pred cCCCEEEEecCcCCCCCcEEEEEEEECC-CCCCCEEEEecCCCc
Confidence 5899999998876788899999999865 677777899964333
No 57
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=24.60 E-value=21 Score=31.44 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=23.8
Q ss_pred CccccCCCCCCceEEEEeeeccCCCc---eEEEcCcCCccc
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDR---YQLECIACGHSW 539 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE---~Fv~C~~Cg~rW 539 (630)
..|.|..|+.+.. ..+ -+.|=+ .|+.|..|.++-
T Consensus 12 l~FTC~~C~tRs~--k~i--Sk~aY~~GvViv~C~gC~n~H 48 (100)
T 2e2z_A 12 IAFTCKKCNTRSS--HTM--SKQAYEKGTVLISCPHCKVRH 48 (100)
T ss_dssp EEEEETTTTEEEE--EEE--EHHHHHTSEEEEECTTTCCEE
T ss_pred EEEEccCCCCcch--hhc--CHHHhhCCEEEEEcCCCccce
Confidence 4699999998753 222 233333 999999999773
No 58
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=24.57 E-value=11 Score=28.25 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=21.8
Q ss_pred ccCCCCCCceEEEEeeeccCCCc-eEEEcCcCCccccc
Q 006806 505 RCSRCNECKVGLRDIIQAGHGDR-YQLECIACGHSWYA 541 (630)
Q Consensus 505 ~C~~C~~~k~~y~q~q~tRsADE-~Fv~C~~Cg~rWk~ 541 (630)
.|..|+-..+. ++ |...+ . +.|+.||.+|+.
T Consensus 3 ~C~~C~tt~Tp--~W---R~gp~G~-~LCNaCGl~~k~ 34 (43)
T 2vut_I 3 TCTNCFTQTTP--LW---RRNPEGQ-PLCNACGLFLKL 34 (43)
T ss_dssp CCSSSCCCCCS--CC---EECTTSC-EECHHHHHHHHH
T ss_pred cCCccCCCCCC--cc---ccCCCCC-cccHHHHHHHHH
Confidence 58999977653 22 33344 5 899999999974
No 59
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=24.18 E-value=11 Score=28.65 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=22.9
Q ss_pred cccCCCCCCceEEEEeeeccCCCc-eEEEcCcCCccccc
Q 006806 504 ARCSRCNECKVGLRDIIQAGHGDR-YQLECIACGHSWYA 541 (630)
Q Consensus 504 ~~C~~C~~~k~~y~q~q~tRsADE-~Fv~C~~Cg~rWk~ 541 (630)
..|..|+-.++. + =|...+ . +.|+.||..|+.
T Consensus 5 ~~C~~C~tt~Tp--~---WR~gp~G~-~LCNaCGl~~k~ 37 (46)
T 1gnf_A 5 RECVNCGATATP--L---WRRDRTGH-YLCNACGLYHKM 37 (46)
T ss_dssp CCCTTTCCCCCS--S---CBCCTTCC-CBCSHHHHHHHH
T ss_pred CCCCCcCCCCCC--c---CccCCCCC-ccchHHHHHHHH
Confidence 469999977643 1 244445 5 899999999974
No 60
>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone, chaperone; 2.70A {Escherichia coli} SCOP: d.193.1.1 PDB: 1xjh_A
Probab=23.13 E-value=22 Score=36.55 Aligned_cols=49 Identities=12% Similarity=0.375 Sum_probs=6.2
Q ss_pred cccCccccCCCCCCceEEEEeeeccCCCc----------eEEEcCcCCccccccccccccee
Q 006806 499 MQMTDARCSRCNECKVGLRDIIQAGHGDR----------YQLECIACGHSWYASRDEASSLT 550 (630)
Q Consensus 499 ~~m~~~~C~~C~~~k~~y~q~q~tRsADE----------~Fv~C~~Cg~rWk~srd~~s~l~ 550 (630)
.+...|.| .|...++. .-+. +=..+| .-+.|.=||..+.|+.+++..|-
T Consensus 223 ~~~v~f~C-~CSrer~~-~aL~-slg~~El~~mi~e~g~iev~C~FC~~~Y~F~~~dl~~l~ 281 (292)
T 1i7f_A 223 PQDVEFKC-TCSRERSA-DALK-TLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEIR 281 (292)
T ss_dssp CCCCCCCC-C----------------------------------------------------
T ss_pred CCCCCeeC-CCCHHHHH-HHHH-hCCHHHHHHHHHcCCCEEEEeeCCCCEEEeCHHHHHHHH
Confidence 34467999 78866552 2222 111222 66899999999999999998875
No 61
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=22.92 E-value=54 Score=29.48 Aligned_cols=37 Identities=19% Similarity=0.506 Sum_probs=22.2
Q ss_pred ccccCCCCC---C--ceEEEEeeeccCCCceEEEcCcCCccccc
Q 006806 503 DARCSRCNE---C--KVGLRDIIQAGHGDRYQLECIACGHSWYA 541 (630)
Q Consensus 503 ~~~C~~C~~---~--k~~y~q~q~tRsADE~Fv~C~~Cg~rWk~ 541 (630)
..-|.+|+. + .++.. +. ..+..-..|+|..||+.=++
T Consensus 60 R~~Ck~C~s~LIPG~t~~vr-i~-~~~k~~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 60 RRYCKKCHAFLVPGINARVR-LR-QKRMPHIVVKCLECGHIMRY 101 (123)
T ss_dssp TSBCTTTCCBCCBTTTEEEE-EE-CSSSCEEEEEETTTTEEEEE
T ss_pred HHhccCCCCEeECCCceEEE-Ee-cCCccEEEEECCCCCCEEEE
Confidence 356999987 2 23322 22 11112278899999987664
No 62
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=22.73 E-value=31 Score=24.49 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=9.9
Q ss_pred eEEEcCcCCccc
Q 006806 528 YQLECIACGHSW 539 (630)
Q Consensus 528 ~Fv~C~~Cg~rW 539 (630)
.||.|..|||--
T Consensus 5 ~fY~C~~CGniv 16 (36)
T 1dxg_A 5 DVYKCELCGQVV 16 (36)
T ss_dssp CEEECTTTCCEE
T ss_pred cEEEcCCCCcEE
Confidence 699999999743
No 63
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.39 E-value=69 Score=27.86 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=22.0
Q ss_pred cccCCCCCCceEE--EEeeeccCCCc-------eEEEcCcCCccccc
Q 006806 504 ARCSRCNECKVGL--RDIIQAGHGDR-------YQLECIACGHSWYA 541 (630)
Q Consensus 504 ~~C~~C~~~k~~y--~q~q~tRsADE-------~Fv~C~~Cg~rWk~ 541 (630)
..|+.|+...... ..+. ..--++ ..+.|..||..+..
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~-~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIP-YTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEE-EEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred cCCCcCCCCceeeceEEEE-EEECCEEEEECCCceeECCCCCCEeec
Confidence 3799999764321 1111 112222 46799999988874
No 64
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=21.84 E-value=1.7e+02 Score=24.66 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=48.0
Q ss_pred ChhhHHHHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCcccccccccCCccccccCCCCCCCChhhHHHHHHHHHH
Q 006806 348 GETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTALEK 427 (630)
Q Consensus 348 gd~~RDK~le~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~v~~~A~~IE~ 427 (630)
....|-+-+.-|++.|..+..-. |+ +. .+ .+...--|...|.
T Consensus 8 s~~ERsknv~eL~qiLmDIn~iN--------GG----------~~---~~-----------------~EKlk~~A~~FEa 49 (85)
T 2k0n_A 8 SNAERAKNVNGLLQVLMDINTLN--------GG----------SS---DT-----------------ADKIRIHAKNFEA 49 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--------SC----------ST---TH-----------------HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcc--------CC----------ch---hH-----------------HHHHHHHHHHHHH
Confidence 36779999999999998876431 11 00 01 4566678999999
Q ss_pred HHHHHcCcChHHHHHHHHHHHHhcc
Q 006806 428 ASHDTLSLDFQKYNQKLRQLLFNLK 452 (630)
Q Consensus 428 alf~~~~~~~~kYk~KiRSL~fNLK 452 (630)
+||.... ....|-+-+|..+.-++
T Consensus 50 aLyaksS-SK~eYmdsMr~ki~aMr 73 (85)
T 2k0n_A 50 ALFAKSS-SKKEYMDSMNEKVAVMR 73 (85)
T ss_dssp HHHHSCC-SHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHHH
Confidence 9998763 56789999999887764
No 65
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=21.41 E-value=55 Score=30.20 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=19.1
Q ss_pred ccCCCCCCceEEEEeeeccCCCc-eEEEcCcCCccc
Q 006806 505 RCSRCNECKVGLRDIIQAGHGDR-YQLECIACGHSW 539 (630)
Q Consensus 505 ~C~~C~~~k~~y~q~q~tRsADE-~Fv~C~~Cg~rW 539 (630)
-|++||..-. +. ....+. ....|..||..+
T Consensus 5 ~C~~CG~~~~----~~-~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 5 FCSQCGGEVI----LR-IPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp BCTTTCCBCE----EE-CCTTCSSCEEEETTTTEEE
T ss_pred cCchhCCccc----cc-cccCCCCcceECCCCCCcc
Confidence 4999998742 11 223344 677899999433
No 66
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=21.10 E-value=84 Score=25.54 Aligned_cols=37 Identities=27% Similarity=0.618 Sum_probs=22.2
Q ss_pred cccCCCCCCce--EEEEeeeccCCCc-------eEEEcCcCCccccc
Q 006806 504 ARCSRCNECKV--GLRDIIQAGHGDR-------YQLECIACGHSWYA 541 (630)
Q Consensus 504 ~~C~~C~~~k~--~y~q~q~tRsADE-------~Fv~C~~Cg~rWk~ 541 (630)
.+|+-|+.... ..+.+. ..-... ....|..||..|..
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~-~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIP-YTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEE-EEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred eECCCCCCCeeEeEEEEEE-EEECCEEEEEcCceeEECCCCCCEEEC
Confidence 47999997543 112221 112233 45799999999873
No 67
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=21.02 E-value=84 Score=26.22 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=36.7
Q ss_pred EEEEEEecccccCCCCCCCCCCCCCCeeEeeCCcccccccccceecEEEEc
Q 006806 166 VTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFV 216 (630)
Q Consensus 166 VrVqWFYRPeEt~~~~~g~~~~~~~nELFlS~h~D~~plesIigKC~V~~i 216 (630)
|.|.=+-|..||.-... +..+..||......+-.++-.|.|++.|+..
T Consensus 21 V~VIGltRG~dtkfhHt---EkLdkGEVmIaQFTehtsaiKiRGkA~I~t~ 68 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHS---EKLDKGEVMICQFTEHTSAIKVRGEALIQTA 68 (78)
T ss_dssp EEEEEEECSSSCCEEEE---EEECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeeccCCccccee---hccCCCcEEEEEeecceeEEEEeeeEEEEec
Confidence 66666778888742111 2238899999999999999999999999874
No 68
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.00 E-value=64 Score=24.67 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=18.3
Q ss_pred cccCCCCCCceEEEEeeeccCCCceEEEcCcCCcccc
Q 006806 504 ARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHSWY 540 (630)
Q Consensus 504 ~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~rWk 540 (630)
-.|++||.. +... . +. .-+.|..||+...
T Consensus 20 k~CP~CG~~-~fm~--~---~~--~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 20 KFCPRCGPG-VFMA--D---HG--DRWACGKCGYTEW 48 (50)
T ss_dssp EECSSSCSS-CEEE--E---CS--SEEECSSSCCEEE
T ss_pred ccCCCCCCc-eEEe--c---CC--CeEECCCCCCEEE
Confidence 359999975 3222 2 11 3468999998653
No 69
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=20.67 E-value=85 Score=25.65 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=24.0
Q ss_pred EEeeCCeEEEcCCCCCCCCeEEEEeEEeeC
Q 006806 130 KYELEDPVLLTPEDTNQKPYVAIIKEITQS 159 (630)
Q Consensus 130 ~YkVGD~VyV~~e~~~~~pyIArI~~I~e~ 159 (630)
.|++||.|+..=.+ ...|.|.|.+|...
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccC
Confidence 68999999998644 78999999999964
No 70
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.25 E-value=69 Score=26.97 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=25.2
Q ss_pred eEEeeCCeEEEcCCCCCCCCeEEEEeEEeeC
Q 006806 129 NKYELEDPVLLTPEDTNQKPYVAIIKEITQS 159 (630)
Q Consensus 129 ~~YkVGD~VyV~~e~~~~~pyIArI~~I~e~ 159 (630)
..|.+|+.|++.-.+ ..+|.|.|.+|...
T Consensus 25 ~~f~eGeDVLarwsD--GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTT--SCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecC--CCEEeEEEEEeccC
Confidence 478999999998866 88999999999854
No 71
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=20.13 E-value=79 Score=34.08 Aligned_cols=39 Identities=23% Similarity=0.452 Sum_probs=24.6
Q ss_pred CccccCCCCCCceEEEEeeeccCCCc---eEEEcCcCCcccc
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDR---YQLECIACGHSWY 540 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE---~Fv~C~~Cg~rWk 540 (630)
....|+.|++.-.+-..+..+-.--| .-+.|..||++..
T Consensus 219 ~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp EEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred ecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 35679999976443222222333444 4479999998875
No 72
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.11 E-value=1e+02 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.0
Q ss_pred EEeeCCeEEEcCCCCCCCCeEEEEeEEeeC
Q 006806 130 KYELEDPVLLTPEDTNQKPYVAIIKEITQS 159 (630)
Q Consensus 130 ~YkVGD~VyV~~e~~~~~pyIArI~~I~e~ 159 (630)
.+.+|+.|++.-.+ ..+|.|.|++|...
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSA 30 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecC
Confidence 46889999998866 88999999999854
No 73
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.06 E-value=41 Score=33.04 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=19.7
Q ss_pred CccccCCCCCCceEEEEeeeccCCCceEEEcCcCCcc
Q 006806 502 TDARCSRCNECKVGLRDIIQAGHGDRYQLECIACGHS 538 (630)
Q Consensus 502 ~~~~C~~C~~~k~~y~q~q~tRsADE~Fv~C~~Cg~r 538 (630)
-...||.||.....+.- . |-. +.|.+||+.
T Consensus 13 ~~~~CP~Cg~~d~~~~~-~-----dg~-~~C~~Cg~~ 42 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLF-S-----DGH-TFCYVCEKW 42 (255)
T ss_dssp EEECCSSSCCSSCEEEE-T-----TSC-EEETTTCCE
T ss_pred cCCcCCCCCCCCCceEe-C-----CCC-eecccCCCc
Confidence 35789999986542222 1 113 899999964
Done!