BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006807
(630 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid11 PE=3 SV=1
Length = 478
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 151/252 (59%), Gaps = 17/252 (6%)
Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARL--YLYGSCANSFGVSKSDIDVCLAI 441
+Y L P+ EE +++++ + L ++ E DA+L +++GS N+ + +SD+DVC+
Sbjct: 54 LYMRLKPSNEEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNLAIQQSDVDVCIIT 113
Query: 442 NDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVN 501
N S+ S +LA +L S ++ + ++RARVPIVK+ DP I CD+ INN +A +N
Sbjct: 114 NGSKYLNSTC--QLAQLLYSYGMKQIVCVSRARVPIVKIWDPQFDIHCDLNINNDVAKIN 171
Query: 502 TKLLRDYAQIDVRLQQLAFIVKHWAKSRGV-NVTYQGTLSSYAYVLMCIHFLQQRRPAIL 560
TK+LR + ID R++ L I+K+WAK R + + GT++SY M ++FLQ R P IL
Sbjct: 172 TKMLRLFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQTRNPPIL 231
Query: 561 PCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSR---NKESIGRLVWAFFNYWAYGHDYA 617
P + + ++ DD + VD + GF + NK S+GRL+ FF Y+ + +Y
Sbjct: 232 PAMLDL-----MSNDDNKMF----VDDIVGFKEKATLNKTSLGRLLIDFFYYYGFSFNYL 282
Query: 618 SNVISVRTGSTI 629
+V+SVR+G+ +
Sbjct: 283 DSVVSVRSGTVL 294
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1
Length = 1495
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 149/264 (56%), Gaps = 11/264 (4%)
Query: 377 LNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDID 436
L+ + Y+ P E ++ + LE + +++P +L L+GS N FG +SD+D
Sbjct: 1001 LDQVCIQCYKDFSPTIIEDQAREHIRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLD 1060
Query: 437 VCLAINDSE----INKSEVLLKLADILQSDN-LQNVQALTRARVPIVKLMDPVTGISCDI 491
VC+ IN E ++ + +LA +L+ + L+N+ +T A+VPIVK +G+ DI
Sbjct: 1061 VCMTINGLETAEGLDCVRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDI 1120
Query: 492 CINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHF 551
+ N LA+ NT+LL Y+ ID R++ L + +K + K + +G+LSSYAY LM ++F
Sbjct: 1121 SLYNTLALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYF 1180
Query: 552 LQQRRPAILPCLQGM---EKTYSVTVDDIECAYFDQVDKLHGFGS---RNKESIGRLVWA 605
LQQR P ++P LQ + EK + VD +FDQ+D+L + S +N ES+G+L
Sbjct: 1181 LQQRNPPVIPVLQEIYKGEKKPEIFVDGWNIYFFDQIDELPTYWSECGKNTESVGQLWLG 1240
Query: 606 FFNYWAYGHDYASNVISVRTGSTI 629
++ D+ +VIS+R S +
Sbjct: 1241 LLRFYTEEFDFKEHVISIRRKSLL 1264
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 115/261 (44%), Gaps = 36/261 (13%)
Query: 404 LLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQ-SD 462
++E + + PD L LYGS + G SD+++ + + +++ +VLL + + L+ SD
Sbjct: 322 IMENVFQHKLPDCSLRLYGSSCSRLGFKNSDVNIDIQF-PAIMSQPDVLLLVQECLKNSD 380
Query: 463 NLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIV 522
+ +V A ARVP+V + +G+ C + N A + TK L +++ +L L
Sbjct: 381 SFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACLTTKHLTALGKLEPKLVPLVIAF 440
Query: 523 KHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQG-------MEKTYSVTVD 575
++WAK ++ +G L Y + LM I FLQQR+ +LP G + K + +
Sbjct: 441 RYWAKLCSIDRPEEGGLPPYVFALMAIFFLQQRKEPLLPVYLGSWIEGFSLSKLGNFNLQ 500
Query: 576 DIE--CAYFDQVDKLHGFGSRNKES-------------------------IGRLVWAFFN 608
DIE ++ D G KE +G+L
Sbjct: 501 DIEKDVVIWEHTDSAAGDTGITKEEAPRETPIKRGQVSLILDVKHQPSVPVGQLWVELLR 560
Query: 609 YWAYGHDYASNVISVRTGSTI 629
++A + A VIS+R +
Sbjct: 561 FYALEFNLADLVISIRVKELV 581
>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid13 PE=1 SV=1
Length = 578
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 149/262 (56%), Gaps = 7/262 (2%)
Query: 373 DIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWP--DARLYLYGSCANSFGV 430
D +++ +Y+S+I + ++ + LE+++ KE+P + + L+GS +
Sbjct: 47 DTDLISSQLYELYDSIILNDSGLERRYAFVQKLEQILKKEFPYKNIKTSLFGSTQSLLAS 106
Query: 431 SKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCD 490
+ SDID+C+ + + + + A + L+ V ++ A+VPIVK+ D +SCD
Sbjct: 107 NASDIDLCIITDPPQCAPTTCEVSAA--FARNGLKKVVCISTAKVPIVKVWDSELQLSCD 164
Query: 491 ICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQ-GTLSSYAYVLMCI 549
IN ++ +NT+L+R Y D R++ L ++K+WAK R +N + GTL+SY M I
Sbjct: 165 CNINKTISTLNTRLMRSYVLCDPRVRPLIVMIKYWAKRRCLNDAAEGGTLTSYTISCMVI 224
Query: 550 HFLQQRRPAILPCLQGME--KTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFF 607
+FLQ+R P ILP LQ + + S D ++ ++FD D +HGFG +N+ES+G L FF
Sbjct: 225 NFLQKRDPPILPSLQMLPHLQDSSTMTDGLDVSFFDDPDLVHGFGDKNEESLGILFVEFF 284
Query: 608 NYWAYGHDYASNVISVRTGSTI 629
++ Y DY V+S+R G+ +
Sbjct: 285 RFFGYLFDYEHFVLSIRHGTFL 306
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2
Length = 1644
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 146/253 (57%), Gaps = 14/253 (5%)
Query: 385 YESLIPAEEEKAKQKKLLTLLEKLVCKEWPD-ARLYLYGSCANSFGVSKSDIDVCLAI-- 441
++ L P E+ ++++L LEK + KE+ + ARL L+GS N FG SD+D+C+ +
Sbjct: 976 FDELSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEG 1035
Query: 442 --NDSEINKSEVLLKLADILQSD-NLQNVQALTRARVPIVKLMDPVTGISCDICINNLLA 498
N ++N E++ LA IL+ L+N+ +T A+VPIVK +G+ DI + N LA
Sbjct: 1036 HENAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLA 1095
Query: 499 VVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPA 558
NT++L YA ID R+Q L + +K +AK + +G+LSSYAY+LM ++FLQQR+P
Sbjct: 1096 QHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPP 1155
Query: 559 ILPCLQGM---EKTYSVTVDDIECAYFDQVDKLH----GFGSRNKESIGRLVWAFFNYWA 611
++P LQ + ++ VD +FD+ ++L G +N ES+G L ++
Sbjct: 1156 VIPVLQEIFDGKQIPQRMVDGWNAFFFDKTEELKKRLPSLG-KNTESLGELWLGLLRFYT 1214
Query: 612 YGHDYASNVISVR 624
D+ VIS+R
Sbjct: 1215 EEFDFKEYVISIR 1227
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 405 LEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNL 464
+ K++ P+ L LYGS F + SD+++ + ++N ++L+++ IL+ L
Sbjct: 403 MSKVIMTFLPECSLRLYGSSLTKFALKSSDVNIDIKF-PPKMNHPDLLIQVLGILKKSAL 461
Query: 465 Q-NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVK 523
+V++ A+VP+V D + + C + N +A + T LL +++ L +
Sbjct: 462 YIDVESDFHAKVPVVVCKDRKSALLCRVSAGNDMACLTTDLLAALGKVEPVFTPLVLAFR 521
Query: 524 HWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQG 565
+WAK ++ G + SY + LM + FLQQR+P +LPCL G
Sbjct: 522 YWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLPCLLG 563
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 146/253 (57%), Gaps = 14/253 (5%)
Query: 385 YESLIPAEEEKAKQKKLLTLLEKLVCKEWPD-ARLYLYGSCANSFGVSKSDIDVCLAI-- 441
++ L P E+ ++++L LEK + KE+ + ARL L+GS N FG SD+D+C+ +
Sbjct: 959 FDELSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEG 1018
Query: 442 --NDSEINKSEVLLKLADILQSD-NLQNVQALTRARVPIVKLMDPVTGISCDICINNLLA 498
N ++N E++ LA IL+ L+N+ +T A+VPIVK +G+ DI + N LA
Sbjct: 1019 HENAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLA 1078
Query: 499 VVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPA 558
NT++L YA ID R+Q L + +K +AK + +G+LSSYAY+LM ++FLQQR+P
Sbjct: 1079 QHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPP 1138
Query: 559 ILPCLQGM---EKTYSVTVDDIECAYFDQVDKLH----GFGSRNKESIGRLVWAFFNYWA 611
++P LQ + ++ VD +FD+ ++L G +N ES+G L ++
Sbjct: 1139 VIPVLQEIFDGKQIPQRMVDGWNAFFFDKTEELKKRLPSLG-KNTESLGELWLGLLRFYT 1197
Query: 612 YGHDYASNVISVR 624
D+ VIS+R
Sbjct: 1198 EEFDFKEYVISIR 1210
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 2/169 (1%)
Query: 398 QKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLAD 457
+++++ + K++ P+ L LYGS F + SD+++ + ++N ++L+K+
Sbjct: 376 RQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKF-PPKMNHPDLLIKVLG 434
Query: 458 ILQSDNLQ-NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQ 516
IL+ + L +V++ A+VP+V D +G+ C + N +A + T LL +I+
Sbjct: 435 ILKKNVLYVDVESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKIEPVFI 494
Query: 517 QLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQG 565
L ++WAK ++ G + SY + LM + FLQQR+P +LPCL G
Sbjct: 495 PLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLPCLLG 543
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 148/265 (55%), Gaps = 13/265 (4%)
Query: 377 LNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDID 436
L+ + Y+ P E ++ + LE + +++P +L L+GS N FG +SD+D
Sbjct: 997 LDQVCVQCYKDFSPTIVEDQAREHIRQNLESFIKQDFPGTKLSLFGSSKNGFGFKQSDLD 1056
Query: 437 VCLAINDSE----INKSEVLLKLADILQSDN-LQNVQALTRARVPIVKLMDPVTGISCDI 491
VC+ IN E ++ + +LA +L+ + L+N+ +T A+VPIVK +G+ DI
Sbjct: 1057 VCMTINGHETAEGLDCVRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDI 1116
Query: 492 CINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHF 551
+ N LA+ NT+LL Y+ ID R++ L + +K + K + +G+LSSYAY LM ++F
Sbjct: 1117 SLYNTLALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYF 1176
Query: 552 LQQRRPAILPCLQGM---EKTYSVTVDDIECAYFDQVDKLHG----FGSRNKESIGRLVW 604
LQQR P ++P LQ + EK + VD +FDQ+++L +G +N E +G+L
Sbjct: 1177 LQQRSPPVIPVLQEIYKGEKKPEILVDGWNIYFFDQINELPTCWPEYG-KNTEPVGQLWL 1235
Query: 605 AFFNYWAYGHDYASNVISVRTGSTI 629
++ D+ +VIS+R S +
Sbjct: 1236 GLLRFYTEEFDFKEHVISIRRKSLL 1260
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 36/261 (13%)
Query: 404 LLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQ-SD 462
++E + + PD L LYGS + G SD+++ + + +++ +VLL + + L+ SD
Sbjct: 322 VMESVFRHKLPDCSLRLYGSSCSRLGFRDSDVNIDVQF-PAVMSQPDVLLLVQECLKNSD 380
Query: 463 NLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIV 522
+ +V A ARVP+V D +G+ C + N A + TK L +++ RL L
Sbjct: 381 SFIDVDADFHARVPVVVCRDKQSGLLCKVSAGNENAWLTTKHLTALGKLEPRLVPLVIAF 440
Query: 523 KHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQG-------MEKTYSVTVD 575
++WAK ++ +G L Y + LM + FLQQR+ +LP G + K + ++
Sbjct: 441 RYWAKLCSIDRPEEGGLPPYVFALMAVFFLQQRKEPLLPVYLGSWIEEFSLNKLGNFSLK 500
Query: 576 DIE--CAYFDQVDKLHGFGSRNKES-------------------------IGRLVWAFFN 608
D+E ++ D G S KE +G+L
Sbjct: 501 DVEKDSVVWEYTDNSTGDTSSAKEEAPKETAAKKGQVPLTFNIKHQPSVPVGQLWVELLR 560
Query: 609 YWAYGHDYASNVISVRTGSTI 629
++A + A VIS+R I
Sbjct: 561 FYALEFNLADLVISIRVKELI 581
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1
SV=1
Length = 509
Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 136/259 (52%), Gaps = 35/259 (13%)
Query: 395 KAKQKKLLTLLEKLVCKE---------WPDARLYLYGSCANSFGVSKSDIDVCLAINDSE 445
+A Q+++ L +K +C+ +P +RLYL GS N FG+ SD D+CL + +
Sbjct: 192 QALQQQVCDLKKKDICRAELQREIQQIFPQSRLYLVGSSLNGFGIRSSDADLCLVLKEEP 251
Query: 446 INKSEVLLKLADILQSDNLQNVQAL-----TRARVPIVKLMDPVTGISCDICINNLLAVV 500
+N++ + +L + + RA+VPIVK D V+G D+ +NN++ +
Sbjct: 252 MNQNTEARHILSLLHKHFYTRLSYIERPQFIRAKVPIVKFRDKVSGAEFDLNVNNVVGIR 311
Query: 501 NTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAIL 560
NT LLR YA +D R++ L ++K WA G+N +GTLSSY VLM +H+LQ IL
Sbjct: 312 NTFLLRTYAYLDKRVRPLVLVIKKWANHHGINDASRGTLSSYTIVLMVLHYLQTLPEPIL 371
Query: 561 PCLQGMEKTYSVTVDDIECAYFDQVDKLH----------GFGSRNKESIGRLVWAFFNYW 610
P LQ K Y EC FD+ +LH F S+N+ +G L+ F Y+
Sbjct: 372 PSLQ---KKYP------EC--FDRTMQLHLVHQAPRNIPQFLSKNETPLGDLLLGFLKYF 420
Query: 611 AYGHDYASNVISVRTGSTI 629
A D++ ++IS+R +
Sbjct: 421 AVEFDWSKDIISLREAKAL 439
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2
SV=1
Length = 528
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 133/259 (51%), Gaps = 35/259 (13%)
Query: 395 KAKQKKLLTLLEKLVCKE---------WPDARLYLYGSCANSFGVSKSDIDVCLAINDSE 445
+A Q+++ L +K +C+ +P +RLYL GS N FG SD D+CL + D
Sbjct: 211 QALQQQVCDLKKKDICRAELQREIQQIFPQSRLYLVGSSLNGFGTRSSDADLCLVLKDEP 270
Query: 446 INKSEVLLKLADILQSDNLQNVQALTR-----ARVPIVKLMDPVTGISCDICINNLLAVV 500
+N+ + +L + + R A+VPIVK D V+G D+ +NN++ +
Sbjct: 271 MNQHTEARHILSLLHKHFYTRLSYIERPQFIKAKVPIVKFRDKVSGAEFDLNVNNVVGIR 330
Query: 501 NTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAIL 560
NT LLR YA I+ R++ L ++K WA G+N +GTLSSY VLM +H+LQ I+
Sbjct: 331 NTFLLRTYAYIENRVRPLVLVIKMWANYHGLNDASRGTLSSYTLVLMALHYLQTLPEPII 390
Query: 561 PCLQGMEKTYSVTVDDIECAYFDQVDKLH----------GFGSRNKESIGRLVWAFFNYW 610
P LQ K Y EC FD +LH + S+N+ +G L+ F Y+
Sbjct: 391 PSLQ---KKYP------EC--FDSTMQLHLVHHAPRNIPKYLSKNETPLGDLLLGFLKYF 439
Query: 611 AYGHDYASNVISVRTGSTI 629
A D++ ++ISVR +
Sbjct: 440 AIEFDWSKDIISVREAKAL 458
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1
SV=1
Length = 509
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 26/240 (10%)
Query: 405 LEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINK---SEVLLKLADILQS 461
L++ + + +P +RLYL GS N FG SD D+CL + + +N+ + +L L L
Sbjct: 211 LQREIQQIFPQSRLYLVGSSLNGFGTRISDADLCLVLKEEPMNQHTEATQILGLLHKLFY 270
Query: 462 DNLQNVQAL--TRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLA 519
L ++ L RA+VPIVK D V+G D+ +NN++ + NT LLR YA ++ R++ L
Sbjct: 271 TRLSYIERLQFIRAKVPIVKFRDKVSGAEFDLNVNNVVGIRNTFLLRTYAYLESRVRPLV 330
Query: 520 FIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIEC 579
++K WA G+N +GTLSSY VLM +H+LQ ILP LQ K Y EC
Sbjct: 331 LVIKKWANHHGINDASRGTLSSYTLVLMVLHYLQTLPEPILPSLQ---KKYP------EC 381
Query: 580 AYFD---QVDKLHG-------FGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
FD Q++ +H + S+N+ +G L+ F Y+A D++ ++ISVR G +
Sbjct: 382 --FDLSMQLNLVHHAPRNIPPYLSKNETPLGDLLLGFLKYFAVEFDWSKDIISVREGKAL 439
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1
Length = 489
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 134/261 (51%), Gaps = 11/261 (4%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++ + ++ K++ L+ + K +P A+++L GS N FG SD
Sbjct: 161 KLSQQILNLFFACEQQSDDLEKKESCRAALQTDIQKIFPCAKVFLGGSSLNGFGSRSSDA 220
Query: 436 DVCLAINDSEINKSE----VLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDI 491
D+CL I + +N + VL + +L + L RA+VPIVK D ++G+ D+
Sbjct: 221 DLCLVIEEGPVNHRKDAVYVLSLVRKLLYKLSYIEKPQLIRAKVPIVKFRDRISGVEFDL 280
Query: 492 CINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHF 551
NN + + NT LLR YA ++ R++ L ++K WA +N +GTLSSY VLM +H+
Sbjct: 281 NFNNTVGIRNTFLLRTYAFVEKRVRPLVLVIKKWANHHCINDASRGTLSSYTLVLMVLHY 340
Query: 552 LQQRRPAILPCLQGMEKTYSVTVD---DIECAYFDQVDKLHGFGSRNKESIGRLVWAFFN 608
LQ ++PCLQ + Y D DI D + F SRN+ S+G L F
Sbjct: 341 LQTLPEPVIPCLQ---RDYPTCFDPKMDIHLVPSGPSD-IPAFVSRNQSSLGDLFLGFLR 396
Query: 609 YWAYGHDYASNVISVRTGSTI 629
Y+A + VISVR T+
Sbjct: 397 YYATVFKWDKQVISVRMARTL 417
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 131/247 (53%), Gaps = 10/247 (4%)
Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAIND 443
+Y + +++E +++ L L + + PDA L +GS + + SD+D+C+ + D
Sbjct: 51 VYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLM-D 109
Query: 444 SEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPV-----TGISCDICINNLLA 498
S + + L+ + L ++ + + L RAR+PI+KL CDI NN LA
Sbjct: 110 SRVQSDTIALQFYEELIAEGFEG-KFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLA 168
Query: 499 VVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFL-QQRRP 557
+ NT LL Y ++D RL+ + +VKHWAK + +N Y GTLSSY YVLM +++L +P
Sbjct: 169 IHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKP 228
Query: 558 AILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYA 617
+ P L VD + + D+++ + S+N S+G L+ FF ++AY +
Sbjct: 229 PVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIP--PSQNYSSLGSLLHGFFRFYAYKFEPR 286
Query: 618 SNVISVR 624
V++ R
Sbjct: 287 EKVVTFR 293
>sp|Q9VD44|GLD2A_DROME Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster
GN=Gld2 PE=1 SV=3
Length = 1364
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 10/257 (3%)
Query: 382 LAIYESLIPAEEEKAKQK---KLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVC 438
L++++ + +++ + K +L + + K +P LYL GS + FG SD+D+C
Sbjct: 938 LSVWKKFLESQQTRHVYKIKMRLWRAIYTVAMKNYPRYGLYLVGSSISYFGSKCSDMDIC 997
Query: 439 LAIN-----DSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICI 493
+ DS + L + ++L N+ L ARVPI++ D + DI
Sbjct: 998 MLACTNPNIDSRMEAVYHLHVMKELLGRTNMFQDFNLIEARVPILRFTDRCHKVEVDINF 1057
Query: 494 NNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ 553
NN + + NT LL Y+Q+D R++ +A VK WA+ +N T+SSY+ +LM IHFLQ
Sbjct: 1058 NNSVGIRNTHLLYCYSQLDWRVRPMALTVKQWAQYHNINNAKNMTISSYSLMLMVIHFLQ 1117
Query: 554 -QRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAY 612
P +LPCL + + + Y D + + + S N +++G L+ +F +Y++
Sbjct: 1118 VGASPPVLPCLHNLYPEKFGLLQPNDFGYVDMNEVMAPYQSDNSQTLGDLLLSFLHYYSV 1177
Query: 613 GHDYASNVISVRTGSTI 629
DY IS+R G +
Sbjct: 1178 -FDYGKYAISIRVGGVL 1193
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1
Length = 484
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 139/272 (51%), Gaps = 27/272 (9%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++E+ + K++ L++ + +P +RL+L GS N FG SD
Sbjct: 155 KLSQQILELFETCQQQASDLKKKELCRAQLQREIQLLFPQSRLFLVGSSLNGFGARSSDG 214
Query: 436 DVCLAINDS----EINKSEVLLKLADILQSDNLQNVQA------LTRARVPIVKLMDPVT 485
D+CL + + ++N+ + ++ + L RA+VPIVK D V+
Sbjct: 215 DLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVS 274
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYV 545
+ D+ +NN + + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ V
Sbjct: 275 CVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHEINDASRGTLSSYSLV 334
Query: 546 LMCIHFLQQRRPAILPCLQGM-EKTYSVTVDDIECAYFDQVDKLHG-------FGSRNKE 597
LM +H+LQ ILP LQ + +++S +V Q+ +H + S+N+
Sbjct: 335 LMVLHYLQTLPEPILPSLQKIYPESFSTSV---------QLHLVHHAPCNVPPYLSKNES 385
Query: 598 SIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
S+G L+ F Y+A D+ + +ISVR I
Sbjct: 386 SLGDLLLGFLKYYATEFDWNTQMISVREAKAI 417
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1
Length = 484
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 139/272 (51%), Gaps = 27/272 (9%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++E+ + K++ L++ + +P +RL+L GS N FG SD
Sbjct: 155 KLSQQILELFETCQQQASDLKKKELCRAQLQREIQLLFPQSRLFLVGSSLNGFGARSSDG 214
Query: 436 DVCLAINDS----EINKSEVLLKLADILQSDNLQNVQA------LTRARVPIVKLMDPVT 485
D+CL + + ++N+ + ++ + L RA+VPIVK D V+
Sbjct: 215 DLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVS 274
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYV 545
+ D+ +NN + + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ V
Sbjct: 275 CVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLV 334
Query: 546 LMCIHFLQQRRPAILPCLQGM-EKTYSVTVDDIECAYFDQVDKLHG-------FGSRNKE 597
LM +H+LQ ILP LQ + +++S +V Q+ +H + S+N+
Sbjct: 335 LMVLHYLQTLPEPILPSLQKIYPESFSTSV---------QLHLVHHAPCNVPPYLSKNES 385
Query: 598 SIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
S+G L+ F Y+A D+ + +ISVR I
Sbjct: 386 SLGDLLLGFLKYYATEFDWNTQMISVREAKAI 417
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1
Length = 484
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 137/266 (51%), Gaps = 15/266 (5%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++E+ + K++ T L++ + +P +RL+L GS N FG SD
Sbjct: 155 KLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDG 214
Query: 436 DVCLAINDS----EINKSEVLLKLADILQSDNLQNVQA------LTRARVPIVKLMDPVT 485
D+CL + + ++N+ + ++ + L RA+VPIVK D V+
Sbjct: 215 DLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVS 274
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYV 545
+ D+ +NN++ + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ V
Sbjct: 275 CVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLV 334
Query: 546 LMCIHFLQQRRPAILPCLQGMEKTYSVTVD-DIECAYFDQVD-KLHGFGSRNKESIGRLV 603
LM +H+LQ ILP LQ K Y + I+ Q + + S+N+ ++G L+
Sbjct: 335 LMVLHYLQTLPEPILPSLQ---KIYPESFSPAIQLHLVHQAPCNVPPYLSKNESNLGDLL 391
Query: 604 WAFFNYWAYGHDYASNVISVRTGSTI 629
F Y+A D+ S +ISVR I
Sbjct: 392 LGFLKYYATEFDWNSQMISVREAKAI 417
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1
Length = 484
Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 141/272 (51%), Gaps = 27/272 (9%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++E+ + K++ T L++ + +P +RL+L GS N FG SD
Sbjct: 155 KLSQQILELFEACQQQVSDLKKKELCRTELQREIQLLFPQSRLFLVGSSLNGFGTRSSDG 214
Query: 436 DVCLAINDS----EINKSEVLLKLADILQSDNLQNVQA------LTRARVPIVKLMDPVT 485
D+CL + + ++N+ + ++ + L RA+VPIVK D V+
Sbjct: 215 DLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVS 274
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYV 545
+ D+ +NN++ + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ V
Sbjct: 275 CVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLV 334
Query: 546 LMCIHFLQQRRPAILPCLQGM-EKTYSVTVDDIECAYFDQVDKLHG-------FGSRNKE 597
LM +H+LQ ILP +Q + +++S ++ Q+ +H + S+N+
Sbjct: 335 LMVLHYLQTLPEPILPSIQKIYPESFSPSI---------QLHLVHQAPCNVPPYLSKNES 385
Query: 598 SIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
++G L+ F Y+A D+ S +ISVR I
Sbjct: 386 NLGDLLLGFLKYYATEFDWNSQMISVREAKAI 417
>sp|O17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 OS=Caenorhabditis elegans GN=gld-2
PE=1 SV=2
Length = 1113
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 13/257 (5%)
Query: 385 YESLIPAEEEKAKQK-KLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAIND 443
Y + + +E ++K L +L + +P + LY+ GS N FG + SD+D+CL I +
Sbjct: 556 YHNKVSQTDEMLQRKLHLRDMLYTAISPVFPLSGLYVVGSSLNGFGNNSSDMDLCLMITN 615
Query: 444 SEI---NKSEVLLKLA-DILQSDNLQNVQALTRARVPIVKL--MDPVTGISCDICINNLL 497
++ N + V+L L LQ + Q L A+VPI+++ P I+ D+ NN +
Sbjct: 616 KDLDQKNDAVVVLNLILSTLQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSV 675
Query: 498 AVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRP 557
A+ NT LL Y+ D R++ L +VK WAK +G+N + + +SY+ VLM IHFLQ
Sbjct: 676 AIRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSYSLVLMVIHFLQCGPT 735
Query: 558 AILPCL-QGMEKTYSVTVD----DIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAY 612
+LP L Q +S VD ++ A + D + S K ++G L+ F +Y+A
Sbjct: 736 KVLPNLQQSYPNRFSNKVDVRTLNVTMALEEVADDIDQSLSE-KTTLGELLIGFLDYYAN 794
Query: 613 GHDYASNVISVRTGSTI 629
+Y + IS+R G +
Sbjct: 795 EFNYDRDAISIRQGRRV 811
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster
GN=wisp PE=1 SV=1
Length = 1373
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 25/234 (10%)
Query: 417 RLYLYGSCANSFGVSKSDIDVCL------------------AINDSEINKSEVLLKLADI 458
R+ L GS FG SDID+CL N+ +L +
Sbjct: 1012 RICLVGSTITGFGTDSSDIDMCLLPEQGVHPHQHQYHQHHHFHNEKRTEALIILTLFNAV 1071
Query: 459 LQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQL 518
L+ + L ARVPI++ D GI D+ NN + + NT LL+ YAQ+D R + L
Sbjct: 1072 LKDTEVFQDFNLIEARVPILRFKDISNGIEVDLNFNNCVGIKNTYLLQLYAQMDWRTRPL 1131
Query: 519 AFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQR-RPAILPCLQGM--EKTYSVTVD 575
IVK WA+ +N + T+SSY+ VLM +H+LQ P +LPCL + EK +
Sbjct: 1132 VVIVKLWAQYHDINDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHSLYPEK---FQLG 1188
Query: 576 DIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
+C D ++ + + + N +++G + FF Y++ D+ + IS+RTG +
Sbjct: 1189 QQDCLDLDLIEPIEPYQALNTQTLGEHLLGFFKYYS-TFDFRNFAISIRTGGVL 1241
>sp|Q4KMD7|STPAP_DANRE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio
rerio GN=tut1 PE=2 SV=1
Length = 797
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 168/354 (47%), Gaps = 50/354 (14%)
Query: 322 DDESELKNDTHERNDKKHRNS--RDKEIRSDNRGKRLLSQRMRNL-KWQIE-CRADIGRL 377
D ++ L H+ N K R KE + +RGK+ + +L K E C+A +
Sbjct: 102 DVQTTLAQPQHQLNGLKLRVKPREKKEFKLASRGKQDCKNTLISLDKLNFELCKA--MSV 159
Query: 378 NAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDV 437
N + ESL + EK + L+ LL+++ + +PD ++ +GS N+FG+ D+D+
Sbjct: 160 NEQIQKVVESLELKDNEKKVRDLLVQLLQEVFTEFFPDCQIVPFGSSVNTFGLHSCDLDL 219
Query: 438 CLAINDSEI----------------------------------NKSEVLLKLADILQS-- 461
L + ++++ + +E+L +A IL+
Sbjct: 220 FLDLENTKVFQARAKSSEQTGENQSEDCRSEDSILSDIDLSTASPAEILELVAVILRKCV 279
Query: 462 DNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFI 521
+ VQAL+ AR+P+VK + DI INN LAV NTK L+ + ID RL+ L +
Sbjct: 280 PGVHKVQALSTARLPVVKFSHKELNLQGDITINNRLAVRNTKFLQLCSGIDSRLRPLVYT 339
Query: 522 VKHWAKSRGVNVTYQG---TLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIE 578
++ WAK + + G L++YA L+ I FLQ R P +LP + + K + ++
Sbjct: 340 IRLWAKQKQLAGNLSGPGPLLNNYALTLLVIFFLQNRDPPVLPSVNQL-KNMACEEEECA 398
Query: 579 CAYFDQVDKLHGFG---SRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
+D F S+N E + L++ FF +++ D+ ++V+S+R G +
Sbjct: 399 IEEWDCTFPSQPFSVPPSKNTEDLCTLLFGFFTFYS-KFDFPASVVSLRDGHVL 451
>sp|Q9NVV4|PAPD1_HUMAN Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1
SV=1
Length = 582
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 37/267 (13%)
Query: 393 EEKAKQKKL-LTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSE------ 445
EE K + L +L+E + +PD + +GS N+FG D+D+ L ++++
Sbjct: 201 EENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHK 260
Query: 446 ------------------INKSEVLLKLADILQ--SDNLQNVQALTRARVPIVKLMDPVT 485
I ++L L + L VQ + AR P+V+ +
Sbjct: 261 ISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQAS 320
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSYAY 544
G CD+ NN +A+ +++LL Y +D R++ L F V+ WA++ + + G +++++
Sbjct: 321 GFQCDLTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSL 380
Query: 545 VLMCIHFLQQRRPAILPCLQGMEKTYS-----VTVDDIECAYFDQVDKLHGFGSRNKESI 599
+M I FLQ+R P ILP L + KT + ++ C + + ++ S+N E++
Sbjct: 381 TMMVIFFLQRRSPPILPTLDSL-KTLADAEDKCVIEGNNCTFVRDLSRIK--PSQNTETL 437
Query: 600 GRLVWAFFNYWAYGHDYASNVISVRTG 626
L+ FF Y+ + N I++R G
Sbjct: 438 ELLLKEFFEYFG-NFAFDKNSINIRQG 463
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 27/290 (9%)
Query: 289 LGLDKR--RENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDK- 345
LG+ KR R+ P + + ++ DF + D +DE + ND + N+ ++S+++
Sbjct: 132 LGIPKREGRKTNPVHDKAVENNSDFIK--FDWNSDEDEDSVSNDKSKNNESLKKSSKNEI 189
Query: 346 ---------------EIRSDNRGKRLLSQRM--RNLKW--QIECRADIGRL-NAPFLAIY 385
E NR ++ + + ++ W Q + ++ R+ + L
Sbjct: 190 PGFMRQRGRFFHEANEKSDSNRKRKRQAYELDSQSCPWHRQYKVEREVSRIFHQDILHFI 249
Query: 386 ESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSE 445
+ + P EE A +K L++ + + V ++WPD LY++GS + SD+D+ + +
Sbjct: 250 DYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEHH 309
Query: 446 INKSEV-LLKLADILQSDNLQN-VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTK 503
++ + LA L+ L + VQ +T A VPI+K +DP+T + DI N +
Sbjct: 310 YRGTKKDMFVLAHHLKKLKLASEVQVITTANVPIIKFVDPLTKVHVDISFNQPGGLKTCL 369
Query: 504 LLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ 553
++ + + L+ L I+KH+ R +N + G LSSYA V + + FLQ
Sbjct: 370 VVNGFMKKYPALRPLVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVSFLQ 419
>sp|Q9D0D3|PAPD1_MOUSE Poly(A) RNA polymerase, mitochondrial OS=Mus musculus GN=Mtpap PE=2
SV=1
Length = 585
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 125/268 (46%), Gaps = 39/268 (14%)
Query: 393 EEKAKQKKL-LTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDS------- 444
EE + + L +L+E + +P + +GS N+FG D+D+ L ++++
Sbjct: 204 EENIRLRHLTCSLIEDIAAAYFPSCVIRPFGSSVNTFGKLGCDLDMFLDLDETGKLDVHK 263
Query: 445 -----------------EINKSEVLLKLADILQSDNL----QNVQALTRARVPIVKLMDP 483
I ++L + + L DN VQ + AR P+V+
Sbjct: 264 NTGNFFMEFQVKNVPSERIATQKILSVIGECL--DNFGPGCVGVQKILNARCPLVRFSHQ 321
Query: 484 VTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSY 542
+G CD+ NN +A+ +++LL Y +D R++ L F V+ WA++ + + G ++++
Sbjct: 322 GSGFQCDLTANNSIALKSSELLYIYGSLDSRVRALVFSVRCWARAHSLTSSIPGAWITNF 381
Query: 543 AYVLMCIHFLQQRRPAILPCLQGMEKTYSV----TVDDIECAYFDQVDKLHGFGSRNKES 598
+ +M I FLQ+R P ILP L ++ ++ C + V+K+ G N E+
Sbjct: 382 SLTVMVIFFLQRRSPPILPTLDSLKSIADAEDRCILEGNNCTFVQDVNKIQPSG--NTET 439
Query: 599 IGRLVWAFFNYWAYGHDYASNVISVRTG 626
+ L+ FF Y+ + N I++R G
Sbjct: 440 LELLIKEFFEYFG-NFAFNKNSINIRQG 466
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 19/227 (8%)
Query: 416 ARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQS---DNLQNVQALTR 472
++ +GS SD+D L I S+ E LL D ++S + NV +
Sbjct: 922 VKIACFGSYRTGLMTKNSDLD--LVIYSSK----EALLPYYDRVKSIIKNEFSNVMPIRG 975
Query: 473 ARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVN 532
AR+PI+K I CD+ +NLL + N+ L+ +Y+ ID R++ L +VK+WA +R ++
Sbjct: 976 ARIPIIKFTGQY-NIHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVKYWASNRLID 1034
Query: 533 VTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDD-----IECAYFDQVDK 587
T+ SSY + +M I +LQQ ILP LQ + YS V D + C + +
Sbjct: 1035 KTHHAFPSSYTWCIMVIFYLQQIPEPILPNLQKLSTQYSKIVRDNDYGNVNCWFNRDTEC 1094
Query: 588 LHGFGSRNKESIGRLVWAFFNYWA----YGHDYASNVISVRTGSTIR 630
G + +++I L+ FF Y+ Y D+ + +I + + R
Sbjct: 1095 YRGSMQKGRKNIALLLRGFFCYYGLTTQYSFDWEAYMIDISSSQLKR 1141
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 8/175 (4%)
Query: 390 PAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKS 449
P+ EE + + ++ + + V + WPDA L+++GS + + SDID + SE+
Sbjct: 192 PSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVT---SELGGK 248
Query: 450 EV---LLKLADILQSDNLQN-VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLL 505
E L LA L+ NL V+ + +ARVPI+K ++P +GI D+ + KL+
Sbjct: 249 ESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIDVSFERTNGIEAAKLI 308
Query: 506 RDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAIL 560
R++ L++L IVK + +R +N + G L ++ + + FL P I+
Sbjct: 309 REWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHM-HPRII 362
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus
GN=TUT1 PE=2 SV=1
Length = 871
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 105/199 (52%), Gaps = 8/199 (4%)
Query: 435 IDVCLAINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTGISCDIC 492
+++ A+ + +L + IL+ + VQ + AR P+VK +G+ DI
Sbjct: 324 VELAEALKGEKAEGGAMLELVGSILRGCVPGVYRVQTVPSARCPVVKFCHRPSGLHGDIS 383
Query: 493 INNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFL 552
++N LA+ N++ L +++D R++ L + ++ WA+ RG++ + L++YA L+ I+FL
Sbjct: 384 LSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGSGP-LLNNYALTLLVIYFL 442
Query: 553 QQRRPAILPCLQGMEKTYS--VTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYW 610
Q R P +LP + + + V VD +C++ +L S NKE + L+ FF+
Sbjct: 443 QTRDPPVLPTVSQLTQKAGEQVEVDGWDCSFPRDASRLE--PSTNKEPLSSLLAQFFSCV 500
Query: 611 AYGHDYASNVISVRTGSTI 629
+ D +++S+R G +
Sbjct: 501 SC-WDLRGSLLSLREGQAL 518
>sp|D2HS90|STPAP_AILME Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Ailuropoda
melanoleuca GN=TUT1 PE=3 SV=1
Length = 869
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 105/201 (52%), Gaps = 10/201 (4%)
Query: 435 IDVCLAINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTGISCDIC 492
+++ A++ + +L + IL+ + VQ + AR P+VK +G+ D+
Sbjct: 323 LELAEALSGEKTEGVAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVS 382
Query: 493 INNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFL 552
++N LA+ N++ L +++D R++ L + ++ WA+ RG++ + LS+YA L+ I+FL
Sbjct: 383 LSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGSGP-LLSNYALTLLVIYFL 441
Query: 553 QQRRPAILPCLQGMEKTYS----VTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFN 608
Q R P +LP + + + V VD +C++ L S NKE + L+ FF+
Sbjct: 442 QTRDPPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASGLE--PSTNKEPLSSLLAQFFS 499
Query: 609 YWAYGHDYASNVISVRTGSTI 629
+ D +++S+R G +
Sbjct: 500 CVSC-WDLRGSLLSLREGQAL 519
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus
norvegicus GN=Tut1 PE=2 SV=1
Length = 866
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 10/207 (4%)
Query: 429 GVSKSDIDVCLAINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTG 486
G + ++++ A D + + VL + IL+ + VQ + AR P+VK +G
Sbjct: 319 GKHRKELELAEASKDEKEEATAVLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSG 378
Query: 487 ISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVL 546
+ DI ++N LA+ N++ L +++D R++ L + ++ WA+ G++ L++YA L
Sbjct: 379 LHGDISLSNRLALYNSRFLNLCSEMDSRVRPLVYTLRCWAQHNGLS-GGGPLLNNYALTL 437
Query: 547 MCIHFLQQRRPAILPCLQGMEKTYS----VTVDDIECAYFDQVDKLHGFGSRNKESIGRL 602
+ I+FLQ R P +LP + + + V VD +C++ +L S N E + L
Sbjct: 438 LVIYFLQTRDPPVLPTVAQLTQRSGEGEQVEVDGWDCSFPKDASRLE--PSTNVEPLSSL 495
Query: 603 VWAFFNYWAYGHDYASNVISVRTGSTI 629
+ FF+ + D + +++S+R G +
Sbjct: 496 LAQFFSCVSC-WDLSGSLLSLREGQAL 521
>sp|Q9H6E5|STPAP_HUMAN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Homo
sapiens GN=TUT1 PE=1 SV=2
Length = 874
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 91/167 (54%), Gaps = 8/167 (4%)
Query: 467 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWA 526
VQ + AR P+VK +G+ D+ ++N LA+ N++ L +++D R++ L + ++ WA
Sbjct: 358 VQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWA 417
Query: 527 KSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCL----QGMEKTYSVTVDDIECAYF 582
+ RG++ + LS+YA L+ I+FLQ R P +LP + Q + V VD +C++
Sbjct: 418 QGRGLSGSGP-LLSNYALTLLVIYFLQTRDPPVLPTVSQLTQKAGEGEQVEVDGWDCSFP 476
Query: 583 DQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
+L S N E + L+ FF+ + D +++S+R G +
Sbjct: 477 RDASRLE--PSINVEPLSSLLAQFFSCVSC-WDLRGSLLSLREGQAL 520
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%)
Query: 390 PAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKS 449
P EE A +++++ +E +V WP A + ++GS + + SDID+ + K
Sbjct: 3 PCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVV------FGKW 56
Query: 450 E--VLLKLADILQSDNLQ---NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKL 504
E L L L+ N+ +++ L +A VPI+KL D T + DI N V +
Sbjct: 57 ERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEF 116
Query: 505 LRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ 553
+++Y + L L ++K + R +N + G +SSY+ +LM I FLQ
Sbjct: 117 IKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 13/185 (7%)
Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAIND 443
YE + P EE+ + ++++ +E ++ + WP A + ++GS + SDID+ +
Sbjct: 141 FYEYMSPRPEEEKMRMEVVSRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVV---- 196
Query: 444 SEINKSE--VLLKLADILQSDNLQN---VQALTRARVPIVKLMDPVTGISCDICINNLLA 498
K E L L + L+ + + V+ L +A VPI+KL D T + DI N
Sbjct: 197 --FGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNG 254
Query: 499 VVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ--QRR 556
V L++D+ + L L ++K + R +N + G + SY+ LM + FLQ R
Sbjct: 255 VRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPRE 314
Query: 557 PAILP 561
A +P
Sbjct: 315 DACIP 319
>sp|A9JTS5|STPAP_XENTR Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus
tropicalis GN=tut1 PE=2 SV=1
Length = 843
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 96/187 (51%), Gaps = 11/187 (5%)
Query: 434 DIDVCLAINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTGISCDI 491
D DV ++ ++ E+L + +L+ + VQ++ AR P++ +G+ D+
Sbjct: 285 DEDVTPGLSLKGLSSEEILEVVGKVLRHCVPGVHGVQSVPTARRPVIHFQHKTSGLRGDV 344
Query: 492 CINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQG---TLSSYAYVLMC 548
+NN LA+ N+ LR + +D R+ QL + V++WA+ + G L++YA L+
Sbjct: 345 TLNNRLALRNSSFLRLCSDLDARVPQLVYTVRYWARVNQLAGNPFGGGPLLNNYALTLLV 404
Query: 549 IHFLQQRRPAILPCLQGMEKTYS----VTVDDIECAYFDQVDKLHGFGSRNKESIGRLVW 604
FLQ R P +LP L + + + +D +C++ ++ G N++S+ L+
Sbjct: 405 FFFLQTRNPPVLPTLVHLREETANEVPQVIDGWDCSFPSDPAQVKESG--NQQSLSSLLS 462
Query: 605 AFFNYWA 611
FF+++A
Sbjct: 463 EFFSFYA 469
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCL--AI 441
YE + P EE+ + +++ +E ++ + WP A + ++GS + SDID+ +
Sbjct: 127 FYEYMSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKW 186
Query: 442 NDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVN 501
+ + E L+ + D+ V+ L +A VPI+KL D T + DI N V
Sbjct: 187 ENLPLWTLEEALRKHKVADEDS---VKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRA 243
Query: 502 TKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ--QRRPAI 559
L++D+ + L L ++K + R +N + G + SY+ LM + FLQ R A
Sbjct: 244 ADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDAC 303
Query: 560 LP 561
+P
Sbjct: 304 IP 305
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%)
Query: 390 PAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKS 449
P EE A +++++ +E +V WP A + ++GS + + SDID+ + K
Sbjct: 3 PCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVV------FGKW 56
Query: 450 E--VLLKLADILQSDNLQ---NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKL 504
E L L L+ N+ +++ L +A VPI+KL D T + DI N V +
Sbjct: 57 ERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEF 116
Query: 505 LRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ 553
+++Y + L L ++K + R +N + G +SSY+ +LM I FLQ
Sbjct: 117 IKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4
PE=1 SV=1
Length = 845
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 3/184 (1%)
Query: 373 DIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDA--RLYLYGSCANSFGV 430
+I L+ + +Y + P E E + K+ + V + W ++ ++GS + +
Sbjct: 76 NIQGLHEEIVDMYHWIKPNEIESRLRTKVFEKVRDSVLRRWKQKTIKISMFGSLRTNLFL 135
Query: 431 SKSDIDVCLAINDSEINKSEVLLKLADILQSDNL-QNVQALTRARVPIVKLMDPVTGISC 489
SDIDV + +D + L + A L++DN+ ++V A VPIVK++D T +S
Sbjct: 136 PTSDIDVLVECDDWVGTPGDWLAETARGLEADNIAESVMVYGGAFVPIVKMVDRDTRLSI 195
Query: 490 DICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCI 549
DI N + V + + ++ L ++K + R +N T+ G LSSY VL+ +
Sbjct: 196 DISFNTVQGVRAASYIAKVKEEFPLIEPLVLLLKQFLHYRNLNQTFTGGLSSYGLVLLLV 255
Query: 550 HFLQ 553
+F Q
Sbjct: 256 NFFQ 259
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Query: 413 WPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQN-VQALT 471
WPDA L+ +GS A + SDID + + + L LA L+ + L V +
Sbjct: 231 WPDANLHCFGSYATDLYLPGSDIDCVVNSKSGDKDNKNALYSLASYLKRNGLATQVSVIA 290
Query: 472 RARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGV 531
+ARVPI+K ++P + I D+ V K++R + L++L IVK + +R +
Sbjct: 291 KARVPIIKFVEPASQIHIDLSFERTNGVEAAKIIRGWLHDTPGLRELVLIVKQFLHARRL 350
Query: 532 NVTYQGTLSSYAYVLMCIHFLQ 553
N + G L ++ + + FL+
Sbjct: 351 NDVHIGGLGGFSIICLAYSFLK 372
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus
musculus GN=Tut1 PE=1 SV=1
Length = 869
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 440 AINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTGISCDICINNLL 497
A D + + VL + IL+ + VQ + AR P+VK +G+ D+ ++N L
Sbjct: 332 ASKDEKEEAAAVLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRL 391
Query: 498 AVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRP 557
A+ N++ L +++D R++ L + ++ WA+ G++ L++YA L+ I+FLQ R P
Sbjct: 392 ALYNSRFLNLCSEMDGRVRPLVYTLRCWAQHNGLS-GGGPLLNNYALTLLVIYFLQTRDP 450
Query: 558 AILPCLQGMEKTYS----VTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFN 608
+LP + + + V VD +C++ +L S N E + L+ FF+
Sbjct: 451 PVLPTVAQLTQRAGEGEQVEVDGWDCSFPKDASRLE--PSTNVEPLSSLLAQFFS 503
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%)
Query: 368 IECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANS 427
++ A+ + A + + E +E E+ + ++ L++++ + +P ++ +GS NS
Sbjct: 150 VQALAEAADVGAQMVKLVELRELSEAERQLRNLVVALMQEVFTEFFPGCVVHPFGSTVNS 209
Query: 428 FGVSKSDIDVCLAINDSE 445
F V D+D+ L + D E
Sbjct: 210 FDVHGCDLDLFLDMGDME 227
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 82/164 (50%), Gaps = 1/164 (0%)
Query: 390 PAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKS 449
P++ E + + + L + V + W DA L+++GS A + SDID + + +
Sbjct: 189 PSKNEIKCRNRTIDKLRRAVKELWSDADLHVFGSFATDLYLPGSDIDCVVNSRNRDKEDR 248
Query: 450 EVLLKLADILQSDNLQ-NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDY 508
+ +LA L++ L ++ + + RVPI+K ++P + + D+ + KL+R++
Sbjct: 249 NYIYELARHLKNKGLAIRMEVIVKTRVPIIKFIEPQSQLHIDVSFERTNGLEAAKLIREW 308
Query: 509 AQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFL 552
+ L++L I+K + SR +N + G L + + + FL
Sbjct: 309 LRDSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLVYSFL 352
>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid12 PE=1 SV=1
Length = 336
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 353 GKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKE 412
GK LL + ++ W E +D NA + E + P EE +K LL L+ + +
Sbjct: 2 GKVLL--ELHSVPWNEEGLSD----NARLYSFLEFVSPKIEELKYRKLLLEKLQTHIREV 55
Query: 413 WPDARLYLYGSCANSFGVSKSDIDVCL-AINDSEINKSEVLLKLADILQSDNLQNVQALT 471
DA L +YGS +S SD+DV L + E+ K V + L L +D +
Sbjct: 56 VLDAELQVYGSMYIGTTLSISDVDVSLKSPRVGELEKRRVTMVLRKYLDAD----ADFHS 111
Query: 472 RARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGV 531
ARVP + L+D V+GI D+ N A +L + Y + +L ++KHW R +
Sbjct: 112 SARVPRINLVD-VSGIGVDLTFGNDKACRTAELQKAYNEEHPIFGRLLMLLKHWLFERDL 170
Query: 532 NVTYQGTLSSYAYVLMCIHFLQQR 555
+ G ++S A M I +L+ R
Sbjct: 171 ENVHHGGIASCALSYMLIGWLEMR 194
>sp|Q9R0L6|PCM1_MOUSE Pericentriolar material 1 protein OS=Mus musculus GN=Pcm1 PE=1 SV=2
Length = 2025
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 34/113 (30%)
Query: 19 EFLLSLLQKPQQHPQAP-------------------PHQTPPQQPSLPNDPAVA---AVG 56
+ L L+++ QHP+ P P P Q +L N P +
Sbjct: 1074 QMLTELMRQQNQHPEKPRSKERGSSASHPSSPNLFCPFSFPTQPVNLFNLPGFTNFPSFA 1133
Query: 57 PTINFQPQWPSNGCDL-----PPTWPRTPLPLN------FLGFPQNPWASSST 98
P +NF P +PSN D PT + PL N ++ FP+ P+ SSS+
Sbjct: 1134 PGMNFSPLFPSNFGDFSQNVSTPTEQQQPLAQNPSGKTEYMAFPK-PFESSSS 1185
>sp|Q8ZTC3|CCA_PYRAE CCA-adding enzyme OS=Pyrobaculum aerophilum (strain ATCC 51768 /
IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=cca PE=3
SV=1
Length = 419
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 385 YESLIPAEEEKAKQKKLLTLLEKLVCKEWP----DARLYLYGSCAN-SFGVSKSDIDVCL 439
Y+ +IP+EEE+ + +++ +++LV + DA + +YGS A ++ + DID+ +
Sbjct: 12 YKLVIPSEEEEKRIREVTQKVKRLVSQIIEEGGIDALVDVYGSGARGTWLPGQRDIDIFV 71
Query: 440 AINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKL 480
+ND I +V+ L + L AL A+ P V L
Sbjct: 72 VLNDRRIKPEDVVKILTSRFTTLGLN--WALRYAQHPYVSL 110
>sp|A1RS16|CCA_PYRIL CCA-adding enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM
9189) GN=cca PE=3 SV=1
Length = 418
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 385 YESLIPAEEEKAKQKKLLTLLEKLVC----KEWPDARLYLYGSCANSFGV-SKSDIDVCL 439
Y+ + P+EEE+ + KK+ ++ L+ K +A + +YGS A S + + DID+ +
Sbjct: 12 YKLVTPSEEEERELKKVTEKVKALIADAINKYGIEAEIGVYGSSARSTWLPGQRDIDIFI 71
Query: 440 AINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDIC 492
+ + IN +V+ L+ + ++ A+ P + L+ V G D+
Sbjct: 72 VLTNRNINIKDVITLLSRYFSERGVT--WSMRYAQHPYLSLL--VDGYEVDVV 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,271,212
Number of Sequences: 539616
Number of extensions: 11716712
Number of successful extensions: 39064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 38217
Number of HSP's gapped (non-prelim): 830
length of query: 630
length of database: 191,569,459
effective HSP length: 124
effective length of query: 506
effective length of database: 124,657,075
effective search space: 63076479950
effective search space used: 63076479950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)