Query 006807
Match_columns 630
No_of_seqs 195 out of 1364
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8f_A Poly(A) RNA polymerase 100.0 1.1E-51 3.6E-56 444.4 25.6 255 371-629 38-299 (405)
2 3pq1_A Poly(A) RNA polymerase; 100.0 6.6E-52 2.3E-56 451.5 23.3 246 375-623 132-408 (464)
3 4fh3_A Poly(A) RNA polymerase 100.0 6.6E-49 2.2E-53 411.6 26.3 248 376-627 15-268 (349)
4 3hj4_A Minor editosome-associa 100.0 1.2E-48 4.1E-53 416.6 18.3 249 375-629 5-272 (384)
5 3nyb_A Poly(A) RNA polymerase 100.0 2.6E-47 8.8E-52 399.1 24.0 232 366-627 10-242 (323)
6 2ikf_A RNA uridylyl transferas 100.0 1.1E-44 3.7E-49 382.8 19.2 244 375-629 26-287 (353)
7 2b4v_A RNA editing complex pro 100.0 2.4E-43 8.1E-48 385.5 21.0 243 370-629 13-377 (468)
8 1q79_A Poly(A) polymerase alph 100.0 5.2E-34 1.8E-38 314.8 19.9 203 376-621 37-286 (514)
9 2hhp_A Poly(A) polymerase; tem 100.0 1.2E-33 4.1E-38 312.9 21.5 203 376-621 24-273 (530)
10 1r89_A TRNA nucleotidyltransfe 99.3 5.3E-11 1.8E-15 129.2 17.0 162 379-551 5-182 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.0 8.2E-09 2.8E-13 108.6 20.1 174 381-555 11-243 (349)
12 4at7_A Interleukin enhancer-bi 98.1 2.9E-05 1E-09 82.3 13.8 175 374-554 24-229 (364)
13 1no5_A Hypothetical protein HI 97.8 8.7E-05 3E-09 66.0 9.4 58 402-461 14-71 (114)
14 1ylq_A Putative nucleotidyltra 97.6 0.0001 3.4E-09 63.8 6.9 43 401-443 3-46 (96)
15 1wot_A Putative minimal nucleo 97.2 0.00045 1.5E-08 59.9 6.2 41 402-443 13-53 (98)
16 2rff_A Putative nucleotidyltra 96.9 0.0011 3.6E-08 59.2 5.9 47 397-443 11-61 (111)
17 4ebj_A Aminoglycoside nucleoti 96.2 0.0058 2E-07 62.2 6.0 44 402-445 26-70 (272)
18 4at7_B NF90, interleukin enhan 95.8 0.039 1.3E-06 59.0 10.6 162 385-554 20-263 (383)
19 1kny_A Kntase, kanamycin nucle 95.7 0.0068 2.3E-07 60.9 4.4 44 400-443 14-59 (253)
20 3jz0_A Lincosamide nucleotidyl 92.2 0.57 1.9E-05 48.3 10.0 90 398-499 24-118 (287)
21 2fmp_A DNA polymerase beta; nu 92.0 0.75 2.6E-05 48.2 10.9 132 399-537 156-297 (335)
22 2bcq_A DNA polymerase lambda; 90.6 1.4 4.9E-05 46.2 11.2 131 399-537 153-291 (335)
23 2ihm_A POL MU, DNA polymerase 86.7 3.3 0.00011 43.8 10.8 63 399-463 160-222 (360)
24 1jms_A Terminal deoxynucleotid 82.8 13 0.00043 39.7 13.2 64 399-463 180-244 (381)
25 3b0x_A DNA polymerase beta fam 78.7 10 0.00035 42.2 11.3 120 399-537 164-284 (575)
26 1jaj_A DNA polymerase beta-lik 73.6 5.1 0.00017 38.4 6.1 106 413-534 29-138 (174)
27 2pbe_A AAD6, aminoglycoside 6- 49.1 13 0.00046 38.0 4.3 44 400-443 8-53 (294)
28 2fcl_A Hypothetical protein TM 44.6 89 0.0031 29.3 8.9 41 415-463 33-76 (169)
29 1v4a_A Glutamate-ammonia-ligas 33.1 67 0.0023 34.6 6.8 45 415-459 154-206 (440)
30 2nrk_A Hypothetical protein GR 23.4 2.8E+02 0.0097 25.9 8.5 122 399-529 20-144 (173)
31 3k7d_A Glutamate-ammonia-ligas 22.5 1.3E+02 0.0046 32.9 6.9 28 416-443 235-262 (498)
No 1
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=1.1e-51 Score=444.45 Aligned_cols=255 Identities=30% Similarity=0.525 Sum_probs=233.9
Q ss_pred chhhhcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCccchHH
Q 006807 371 RADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSE 450 (630)
Q Consensus 371 ~~dId~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k~e 450 (630)
..++++|+.+|.++|+++.||++|.+.|++++.+|+++|++.||+++|++|||+++|+++++|||||||..+... ...+
T Consensus 38 ~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~-~~~~ 116 (405)
T 4e8f_A 38 PNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV-QSDT 116 (405)
T ss_dssp CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC----CTT
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCC-CHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999886532 2234
Q ss_pred HHHHHHHHHhhCCCcceEEeeeeeeceEEEe-cccC----CeeeeEEeeccchhhchHHHHHHhhcChhhHHHHHHHHHH
Q 006807 451 VLLKLADILQSDNLQNVQALTRARVPIVKLM-DPVT----GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHW 525 (630)
Q Consensus 451 iL~~LakiLr~~~~~nV~~I~~ARVPIIKf~-d~~t----gI~~DISfnN~~Gv~nT~LL~~y~~~dPrlR~LvllVK~W 525 (630)
++.++++.|++. ..++..|.+||||||||+ |+.+ |++|||||+|..|+.+|.+|+.|++.+|++|+|+++||+|
T Consensus 117 ~l~~l~~~L~~~-~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~w 195 (405)
T 4e8f_A 117 IALQFYEELIAE-GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHW 195 (405)
T ss_dssp HHHHHHHHHHHT-TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 788899999877 567899999999999999 8888 9999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcccCCCChHHHHHHHHHHh-hhcCCCcccccccccccccceecCcccccccccccccCCCCCCcCCHHHHHH
Q 006807 526 AKSRGVNVTYQGTLSSYAYVLMCIHFL-QQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVW 604 (630)
Q Consensus 526 AK~rGLnd~~~GgLSSYaLiLMVI~FL-Q~~~PpILP~Lqel~~~~~~~Vd~~~~~f~d~~e~L~~~~s~N~~SLgeLLl 604 (630)
|+++||++++.||||||+|++|||+|| |...||+||+||++.......+++|+|.|.+++.. .|+..|..++|+||+
T Consensus 196 ak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~--~~~~~n~~slg~LL~ 273 (405)
T 4e8f_A 196 AKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLED--IPPSQNYSSLGSLLH 273 (405)
T ss_dssp HHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGG--SCCCSCCCCHHHHHH
T ss_pred HHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhh--hccccccccHHHHHH
Confidence 999999999999999999999999999 77889999999999887778899999999887543 366778999999999
Q ss_pred HHHHHHhcCCCCCCceEEec-CCCcC
Q 006807 605 AFFNYWAYGHDYASNVISVR-TGSTI 629 (630)
Q Consensus 605 ~FF~yYs~~FDy~~~VISIR-~G~il 629 (630)
+||+||+.+|||.+.+|||| .|+++
T Consensus 274 ~FF~yY~~~Fd~~~~vIsir~~g~~~ 299 (405)
T 4e8f_A 274 GFFRFYAYKFEPREKVVTFRRPDGYL 299 (405)
T ss_dssp HHHHHHHHTCCTTTBEECSSSTTCCC
T ss_pred HHHHHHhcccCCCCcEEEEecCCccc
Confidence 99999998899999999999 77665
No 2
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=6.6e-52 Score=451.46 Aligned_cols=246 Identities=24% Similarity=0.503 Sum_probs=199.7
Q ss_pred hcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCcc--------
Q 006807 375 GRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEI-------- 446 (630)
Q Consensus 375 d~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i-------- 446 (630)
+.|+.||.+||+++.||++|.+.|..++.+|+++|+..||+++|++|||++||+++++|||||||..+....
T Consensus 132 ~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g 211 (464)
T 3pq1_A 132 ESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISG 211 (464)
T ss_dssp SSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEEC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCccccccccccc
Confidence 579999999999999999999999999999999999999999999999999999999999999997653210
Q ss_pred ----------------chHHHHHHHHHHHhhC--CCcceEEeeeeeeceEEEecccCCeeeeEEeeccchhhchHHHHHH
Q 006807 447 ----------------NKSEVLLKLADILQSD--NLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDY 508 (630)
Q Consensus 447 ----------------~k~eiL~~LakiLr~~--~~~nV~~I~~ARVPIIKf~d~~tgI~~DISfnN~~Gv~nT~LL~~y 508 (630)
...++|..+++.|++. ++.+|+.|.+||||||||+|..+|++|||||+|.+|+.||++|+.|
T Consensus 212 ~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~ll~~y 291 (464)
T 3pq1_A 212 NFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIY 291 (464)
T ss_dssp C---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHHHHHH
T ss_pred chhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHHHHHH
Confidence 0135788899999863 5788999999999999999999999999999999999999999999
Q ss_pred hhcChhhHHHHHHHHHHHHhcCCCCcccCC-CChHHHHHHHHHHhhhcCCCccccccccccc----ccceecCccccccc
Q 006807 509 AQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSYAYVLMCIHFLQQRRPAILPCLQGMEKT----YSVTVDDIECAYFD 583 (630)
Q Consensus 509 ~~~dPrlR~LvllVK~WAK~rGLnd~~~Gg-LSSYaLiLMVI~FLQ~~~PpILP~Lqel~~~----~~~~Vd~~~~~f~d 583 (630)
+..||++|+|+++||+||+.+||++++.|| ||||+|++|||+|||.+.||+||+||++... ....+++|+|.|++
T Consensus 292 ~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~ 371 (464)
T 3pq1_A 292 GALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVR 371 (464)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC--------------
T ss_pred HHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccc
Confidence 999999999999999999999999999998 9999999999999999999999999998642 23578999999999
Q ss_pred ccccccCCCCCCcCCHHHHHHHHHHHHhcCCCCCCceEEe
Q 006807 584 QVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISV 623 (630)
Q Consensus 584 ~~e~L~~~~s~N~~SLgeLLl~FF~yYs~~FDy~~~VISI 623 (630)
+++++. ...|+.++++||++||+||+ +|||.+++|||
T Consensus 372 dl~~l~--~~~N~~slgeLL~gFF~yYa-~FDf~~~vIsI 408 (464)
T 3pq1_A 372 DLSRIK--PSQNTETLELLLKEFFEYFG-NFAXXXXXXXX 408 (464)
T ss_dssp ---------CCCCCCHHHHHHHHHHHGG-GCCCCCCCCCC
T ss_pred cHhhcC--CCCCcCCHHHHHHHHHHHHH-hCCCccccccc
Confidence 888774 46799999999999999999 79999999999
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=6.6e-49 Score=411.63 Aligned_cols=248 Identities=30% Similarity=0.563 Sum_probs=219.1
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCccchHHHHHHH
Q 006807 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKL 455 (630)
Q Consensus 376 ~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k~eiL~~L 455 (630)
+|...+.++|+.+.||++|.+.|++++++|+++|++.||+++|++|||+++|+++++||||+||..+.. .....+..++
T Consensus 15 el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~-~~~~~~~~~~ 93 (349)
T 4fh3_A 15 EFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSR-VQSDTIALQF 93 (349)
T ss_dssp HHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTT-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCC-CChHHHHHHH
Confidence 345556667999999999999999999999999999999999999999999999999999999987654 3444455555
Q ss_pred HHHHhhCCCcceEEeeeeeeceEEEeccc-----CCeeeeEEeeccchhhchHHHHHHhhcChhhHHHHHHHHHHHHhcC
Q 006807 456 ADILQSDNLQNVQALTRARVPIVKLMDPV-----TGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRG 530 (630)
Q Consensus 456 akiLr~~~~~nV~~I~~ARVPIIKf~d~~-----tgI~~DISfnN~~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~rG 530 (630)
.+.+.... .++..|.+||||||||++.. +++.|||||+|.+|++||++|+.|+..+|+||+|+++||+|||++|
T Consensus 94 ~~~~~~~~-~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~ 172 (349)
T 4fh3_A 94 YEELIAEG-FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQ 172 (349)
T ss_dssp HHHHHHTT-EEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhc-ccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcC
Confidence 55444433 46778999999999999753 6899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCChHHHHHHHHHHhhh-cCCCcccccccccccccceecCcccccccccccccCCCCCCcCCHHHHHHHHHHH
Q 006807 531 VNVTYQGTLSSYAYVLMCIHFLQQ-RRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNY 609 (630)
Q Consensus 531 Lnd~~~GgLSSYaLiLMVI~FLQ~-~~PpILP~Lqel~~~~~~~Vd~~~~~f~d~~e~L~~~~s~N~~SLgeLLl~FF~y 609 (630)
|++++.|+||||+|++|||+|||+ ..||++|+++.........+++|+|.|.+.++.+. ...|..++|+||++||+|
T Consensus 173 l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~n~~slg~LL~~FF~~ 250 (349)
T 4fh3_A 173 INSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIP--PSQNYSSLGSLLHGFFRF 250 (349)
T ss_dssp CCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSC--CCSCCCCHHHHHHHHHHH
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhcc--cccCcccHHHHHHHHHHH
Confidence 999999999999999999999996 56899999988766667788999999988877764 467889999999999999
Q ss_pred HhcCCCCCCceEEecCCC
Q 006807 610 WAYGHDYASNVISVRTGS 627 (630)
Q Consensus 610 Ys~~FDy~~~VISIR~G~ 627 (630)
|+.+|||.+.+||++.++
T Consensus 251 Y~~~Fd~~~~vIsi~~~~ 268 (349)
T 4fh3_A 251 YAYKFEPREKVVTFRRPD 268 (349)
T ss_dssp HHHTCCTTTBCBCSSSTT
T ss_pred hhhccCCCCceEEecCCC
Confidence 998899999999999864
No 4
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=1.2e-48 Score=416.60 Aligned_cols=249 Identities=24% Similarity=0.373 Sum_probs=207.4
Q ss_pred hcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCc-----cchH
Q 006807 375 GRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSE-----INKS 449 (630)
Q Consensus 375 d~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~-----i~k~ 449 (630)
.+|+.||++||+++.||++|.+.|++++.+|+++|++.||+++|++|||+++|+++++|||||||..+... +.+.
T Consensus 5 ~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~~ 84 (384)
T 3hj4_A 5 REFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERV 84 (384)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccchh
Confidence 46899999999999999999999999999999999999999999999999999999999999999886532 2221
Q ss_pred H---HH--HHHHHHHhhCCCcceEEeeeeeeceEEEecccCCeeeeEEeeccchhhchHHHHHHhhcCh-hhHHHHHHHH
Q 006807 450 E---VL--LKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDV-RLQQLAFIVK 523 (630)
Q Consensus 450 e---iL--~~LakiLr~~~~~nV~~I~~ARVPIIKf~d~~tgI~~DISfnN~~Gv~nT~LL~~y~~~dP-rlR~LvllVK 523 (630)
. .+ .++++.+...++.++. |.+||||||||+|+.+|++|||||+|..|+.||++|+.|++.+| ++|+|+++||
T Consensus 85 ~~~~~lrll~L~k~~~~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y~~~~p~rlr~LvllvK 163 (384)
T 3hj4_A 85 DEQNNKRMTRFGKEASAMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVK 163 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcccCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 11 1234444444566665 56999999999999999999999999999999999999999955 7999999999
Q ss_pred HHHHhcCCCCcccCCCChHHHHHHHHHHhhhcCCCccccccccccccc-ceecCcccccccccccccC---CCCCCcCCH
Q 006807 524 HWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYS-VTVDDIECAYFDQVDKLHG---FGSRNKESI 599 (630)
Q Consensus 524 ~WAK~rGLnd~~~GgLSSYaLiLMVI~FLQ~~~PpILP~Lqel~~~~~-~~Vd~~~~~f~d~~e~L~~---~~s~N~~SL 599 (630)
+||+++||++++.|+||||+|++|||+|||++ ++||+||++...+. +.+++++ +..+..++.. ..+.|+++|
T Consensus 164 ~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~--~vLP~Lq~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~s~N~~sL 239 (384)
T 3hj4_A 164 AWGKAREVIAPERSTFNSFTVTTMALMVLQEL--GLLPVFSKPTGEFGELTVADAE--MLLQEFKLPPIYDSLHDDDEKL 239 (384)
T ss_dssp HHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHH--TSSCCCCCCCSTTSCCCHHHHH--HHHTTCCCCGGGGGCSSCHHHH
T ss_pred HHHHHcCCCCccCCCccHHHHHHHHHHHHhcC--CCCCccccccccCCcccccccH--hhhhhhcCCCCcCcCCCCcccH
Confidence 99999999999999999999999999999997 79999999765442 2334443 2222222221 235688999
Q ss_pred HHH----HHHHHHHHhcCCCCCCceEEecCCCcC
Q 006807 600 GRL----VWAFFNYWAYGHDYASNVISVRTGSTI 629 (630)
Q Consensus 600 geL----Ll~FF~yYs~~FDy~~~VISIR~G~il 629 (630)
|+| |++||+||+ +|||.+++|||+..+..
T Consensus 240 geL~~~lL~~Ff~yY~-~Fdf~~~vISi~~p~~~ 272 (384)
T 3hj4_A 240 GEAVFFCLQRFAEYYA-KYDFSAGTVSLIHPRRH 272 (384)
T ss_dssp HHHHHHHHHHHHHHHH-HCCTTTBCBCSSSTTCB
T ss_pred HHHHHHHHHHHHHHhe-ecCCCCCEEEecCCccc
Confidence 999 999999999 89999999999986543
No 5
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-47 Score=399.09 Aligned_cols=232 Identities=23% Similarity=0.409 Sum_probs=211.1
Q ss_pred cccccchhhhcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCc
Q 006807 366 WQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSE 445 (630)
Q Consensus 366 ~~~~c~~dId~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~ 445 (630)
++.++..-.+.|+.||.+|++++.|+++|.+.|++++++|++++++.||+++|++|||+++|+++++||||+++..+...
T Consensus 10 ~~~~~~~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~ 89 (323)
T 3nyb_A 10 DHSKQKEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGG 89 (323)
T ss_dssp CCTTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCG
T ss_pred CccccchHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCC
Confidence 34556677888999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred cchHHHHHHHHHHHhhCC-CcceEEeeeeeeceEEEecccCCeeeeEEeeccchhhchHHHHHHhhcChhhHHHHHHHHH
Q 006807 446 INKSEVLLKLADILQSDN-LQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKH 524 (630)
Q Consensus 446 i~k~eiL~~LakiLr~~~-~~nV~~I~~ARVPIIKf~d~~tgI~~DISfnN~~Gv~nT~LL~~y~~~dPrlR~LvllVK~ 524 (630)
....+++..+++.|++.+ +.+|++|.+||||||||+|+.+|++|||||++.+|+++|++|+.|+..+|++|+|+++||+
T Consensus 90 ~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK~ 169 (323)
T 3nyb_A 90 KESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLIREWLDDTPGLRELVLIVKQ 169 (323)
T ss_dssp GGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344578999999998755 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccCCCChHHHHHHHHHHhhhcCCCcccccccccccccceecCcccccccccccccCCCCCCcCCHHHHHH
Q 006807 525 WAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVW 604 (630)
Q Consensus 525 WAK~rGLnd~~~GgLSSYaLiLMVI~FLQ~~~PpILP~Lqel~~~~~~~Vd~~~~~f~d~~e~L~~~~s~N~~SLgeLLl 604 (630)
|||++||++++.||||||+|++||++|||.+ |+++|.- ..+..++|+||+
T Consensus 170 wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~-p~~~~~~-----------------------------~~~~~~lg~LL~ 219 (323)
T 3nyb_A 170 FLHARRLNNVHTGGLGGFSIICLVFSFLHMH-PRIITNE-----------------------------IDPKDNLGVLLI 219 (323)
T ss_dssp HHHHTTCSCGGGTCCCHHHHHHHHHHHHHTC-HHHHTTC-----------------------------BCGGGCHHHHHH
T ss_pred HHHHcCCCCccCCCcCHHHHHHHHHHHHHhC-CccCccc-----------------------------CCccccHHHHHH
Confidence 9999999999999999999999999999996 5554420 013468999999
Q ss_pred HHHHHHhcCCCCCCceEEecCCC
Q 006807 605 AFFNYWAYGHDYASNVISVRTGS 627 (630)
Q Consensus 605 ~FF~yYs~~FDy~~~VISIR~G~ 627 (630)
+||+||+.+|||.+.+|||+.|+
T Consensus 220 ~Ff~~Y~~~Fd~~~~~Isv~~g~ 242 (323)
T 3nyb_A 220 EFFELYGKNFGYDDVALGSSDGY 242 (323)
T ss_dssp HHHHHHHHTCCTTTEEEEESSSC
T ss_pred HHHHHhccccCCCCcEEEEecCC
Confidence 99999998999999999999986
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.1e-44 Score=382.84 Aligned_cols=244 Identities=22% Similarity=0.347 Sum_probs=204.3
Q ss_pred hcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEeccee-cCCCCCCCCceEEeecCCC-------cc
Q 006807 375 GRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCA-NSFGVSKSDIDVCLAINDS-------EI 446 (630)
Q Consensus 375 d~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~a-tGl~lp~SDIDI~L~~~~~-------~i 446 (630)
..|+.++.++++.+.++.+|.+.|++++++|+++|++.||+++|++|||++ +|+++++||||+||..+.. +.
T Consensus 26 ~~l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~ 105 (353)
T 2ikf_A 26 AVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDA 105 (353)
T ss_dssp HHHHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCC
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccc
Confidence 446889999999999999999999999999999999999999999999997 9999999999999976421 10
Q ss_pred -------chHHHHHHHHHHHhhCC-CcceEEeeeeeeceEEEecccCCeeeeEEeeccchhhchHHHHHHhhcChhhHHH
Q 006807 447 -------NKSEVLLKLADILQSDN-LQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQL 518 (630)
Q Consensus 447 -------~k~eiL~~LakiLr~~~-~~nV~~I~~ARVPIIKf~d~~tgI~~DISfnN~~Gv~nT~LL~~y~~~dPrlR~L 518 (630)
...+++.+++++|++.. +.+|+.|.+||||||||++ .++++|||||+|.+|+.+|++|+.|+..+|+||+|
T Consensus 106 ~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~-~~~i~~Dis~~n~~g~~~t~ll~~~~~~~p~~r~l 184 (353)
T 2ikf_A 106 ATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG-GGAVDFDITAYRRNGVRNSALLRAYFEQNPPCRWL 184 (353)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC-SSSCEEEEEESCCHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc-CCCcEEEEEecCccHHHHHHHHHHHHHhCccHHHH
Confidence 01467888999998744 5789999999999999998 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccc-CCCChHHHHHHHHHHhhh-cCCCcccccccccccccceecCcccccccccccccCCCCCCc
Q 006807 519 AFIVKHWAKSRGVNVTYQ-GTLSSYAYVLMCIHFLQQ-RRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNK 596 (630)
Q Consensus 519 vllVK~WAK~rGLnd~~~-GgLSSYaLiLMVI~FLQ~-~~PpILP~Lqel~~~~~~~Vd~~~~~f~d~~e~L~~~~s~N~ 596 (630)
+++||+|||++||++++. |+||||+|++|||+|||+ ..||++|+++.... .++.+.. |. .+ .+...|.
T Consensus 185 ~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~----~~~~~~~-~~----~~-~~~~~~~ 254 (353)
T 2ikf_A 185 SMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVS----RVEPLPP-HL----PL-EEPADEG 254 (353)
T ss_dssp HHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGG----GSCSSCC-CC----CC-CCCTTTT
T ss_pred HHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChh----hccCCCc-CC----cc-ccCCCCc
Confidence 999999999999999999 999999999999999986 46789998864321 1222221 11 11 1234578
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCceEEecCCCcC
Q 006807 597 ESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629 (630)
Q Consensus 597 ~SLgeLLl~FF~yYs~~FDy~~~VISIR~G~il 629 (630)
.++|+||++||+||+.+|||.+.+|||+.|+++
T Consensus 255 ~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~ 287 (353)
T 2ikf_A 255 LELGTQVLDFLHFFLHEFDSDKQVISLNRPGIT 287 (353)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTEEECSSSSSCE
T ss_pred ccHHHHHHHHHHHhccccCcCceEEEcCCCcce
Confidence 899999999999999889999999999998764
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=2.4e-43 Score=385.46 Aligned_cols=243 Identities=24% Similarity=0.309 Sum_probs=203.6
Q ss_pred cchhhhcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecce-ecCCCCCCCCceEEeecCCCccch
Q 006807 370 CRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSC-ANSFGVSKSDIDVCLAINDSEINK 448 (630)
Q Consensus 370 c~~dId~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~-atGl~lp~SDIDI~L~~~~~~i~k 448 (630)
++..+..|...+.+......+++++.+.|+++++.|+.++++.||+++|++|||+ .+|+++++||||+|++.+......
T Consensus 13 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~ 92 (468)
T 2b4v_A 13 SPDHYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSH 92 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCH
T ss_pred ChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccc
Confidence 4556778888999999999999999999999999999999999999999999999 699999999999999886432221
Q ss_pred -H--HHHHHHHHHHhhC--C--CcceEEeeeeeeceEEEe----cc----------------------------------
Q 006807 449 -S--EVLLKLADILQSD--N--LQNVQALTRARVPIVKLM----DP---------------------------------- 483 (630)
Q Consensus 449 -~--eiL~~LakiLr~~--~--~~nV~~I~~ARVPIIKf~----d~---------------------------------- 483 (630)
. ..+.+|++.|++. + +.+++.|.+||||||||+ |+
T Consensus 93 ~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 172 (468)
T 2b4v_A 93 EVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGDNDV 172 (468)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHHHH
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccccccccccccc
Confidence 1 2245689999876 5 578999999999999997 21
Q ss_pred ---------------------------------------------------------------------cCCeeeeEEee
Q 006807 484 ---------------------------------------------------------------------VTGISCDICIN 494 (630)
Q Consensus 484 ---------------------------------------------------------------------~tgI~~DISfn 494 (630)
.+|++|||||+
T Consensus 173 ~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DISfn 252 (468)
T 2b4v_A 173 EYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDISFV 252 (468)
T ss_dssp HHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSCEEEESC
T ss_pred cchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccccccceEEEEecc
Confidence 14789999998
Q ss_pred ccchhhchHHHHHHhhcChh-hHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHHHHhhhc------CCCccccccccc
Q 006807 495 NLLAVVNTKLLRDYAQIDVR-LQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQR------RPAILPCLQGME 567 (630)
Q Consensus 495 N~~Gv~nT~LL~~y~~~dPr-lR~LvllVK~WAK~rGLnd~~~GgLSSYaLiLMVI~FLQ~~------~PpILP~Lqel~ 567 (630)
.+|+.||++|++|++.||+ +|+|+++||+|||+++|++++.|+||||+|++|||||||+. .|+++|++|++.
T Consensus 253 -~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~ 331 (468)
T 2b4v_A 253 -GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLP 331 (468)
T ss_dssp -SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSC
T ss_pred -hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhcc
Confidence 9999999999999999999 99999999999999999999999999999999999999975 377888888764
Q ss_pred ccccceecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHhcCCCCCCceEEecCCCcC
Q 006807 568 KTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629 (630)
Q Consensus 568 ~~~~~~Vd~~~~~f~d~~e~L~~~~s~N~~SLgeLLl~FF~yYs~~FDy~~~VISIR~G~il 629 (630)
... .| ..+...|..++|+||++||+||+.+|||.+.+|||+.|+++
T Consensus 332 ~~~---------~~-------~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~ 377 (468)
T 2b4v_A 332 RYP---------DF-------SPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRS 377 (468)
T ss_dssp SSC---------CC-------CCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCE
T ss_pred ccc---------CC-------CcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCcce
Confidence 211 11 11334577899999999999999999999999999999764
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=5.2e-34 Score=314.81 Aligned_cols=203 Identities=20% Similarity=0.303 Sum_probs=178.0
Q ss_pred cccHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhh----------------CCCcEEEEecceecCCCCCCCCceE
Q 006807 376 RLNAPFLAIYES--LIPAEEEKAKQKKLLTLLEKLVCKE----------------WPDARLYLYGSCANSFGVSKSDIDV 437 (630)
Q Consensus 376 ~L~~ell~~~~~--l~PT~EE~~~Reqvl~~Le~iI~~~----------------~P~a~V~~FGS~atGl~lp~SDIDI 437 (630)
+++.+|.++++. +.||+||.++|++++.+|+++|++. .++++|++|||+++|+++|+||||+
T Consensus 37 ~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~ 116 (514)
T 1q79_A 37 LLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDA 116 (514)
T ss_dssp HHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEE
T ss_pred HhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEeeeeccCCCCCCCceeE
Confidence 356677777776 8899999999999999999999842 3579999999999999999999999
Q ss_pred EeecCCCccchHHHHHHHHHHHhh-CCCcceEEeeeeeeceEEEecccCCeeeeEEeecc--------------------
Q 006807 438 CLAINDSEINKSEVLLKLADILQS-DNLQNVQALTRARVPIVKLMDPVTGISCDICINNL-------------------- 496 (630)
Q Consensus 438 ~L~~~~~~i~k~eiL~~LakiLr~-~~~~nV~~I~~ARVPIIKf~d~~tgI~~DISfnN~-------------------- 496 (630)
+++.+.. ..+.+++..+++.|++ ..+.++..|..|+||||||+. +|++|||+|++.
T Consensus 117 ~~v~p~~-~~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~~p~~l~l~~~~~L~~l 193 (514)
T 1q79_A 117 LCVAPRH-VDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCF--DGIEIDILFARLALQTIPEDLDLRDDSLLKNL 193 (514)
T ss_dssp EEEECTT-SCHHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSCSSBCTTCCTTCGGGGTTC
T ss_pred EEecCCc-CCHHHHHHHHHHHHhcCccCceEEEecCCcccEEEEEE--CCeeEEEEEecCCcccCcccccCCchhhhccc
Confidence 8888654 4456778888999986 567899999999999999985 799999999863
Q ss_pred --------chhhchHHHHHHhhcChhhHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHHHHhhhcCCCcccccccccc
Q 006807 497 --------LAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEK 568 (630)
Q Consensus 497 --------~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~rGLnd~~~GgLSSYaLiLMVI~FLQ~~~PpILP~Lqel~~ 568 (630)
+|++.+.+|..++..++.||.++++||+|||+||||+++.|+||||+|++||+++||.+ |
T Consensus 194 d~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~-P----------- 261 (514)
T 1q79_A 194 DIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLY-P----------- 261 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHS-T-----------
T ss_pred chhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhC-C-----------
Confidence 36667888999999999999999999999999999999999999999999999999985 2
Q ss_pred cccceecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHhcCCCCCCceE
Q 006807 569 TYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVI 621 (630)
Q Consensus 569 ~~~~~Vd~~~~~f~d~~e~L~~~~s~N~~SLgeLLl~FF~yYs~~FDy~~~VI 621 (630)
..++++||..||+||+ .|||.+.|+
T Consensus 262 ---------------------------~~s~~~LL~~FF~~y~-~~dw~~pV~ 286 (514)
T 1q79_A 262 ---------------------------NAIASTLVHKFFLVFS-KWEWPNPVL 286 (514)
T ss_dssp ---------------------------TCCHHHHHHHHHHHHH-SCCTTSCBC
T ss_pred ---------------------------CCCHHHHHHHHHHHHh-cCCCCCCeE
Confidence 1357899999999999 799998776
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.2e-33 Score=312.93 Aligned_cols=203 Identities=20% Similarity=0.332 Sum_probs=179.2
Q ss_pred cccHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhh---------CC-------CcEEEEecceecCCCCCCCCceE
Q 006807 376 RLNAPFLAIYES--LIPAEEEKAKQKKLLTLLEKLVCKE---------WP-------DARLYLYGSCANSFGVSKSDIDV 437 (630)
Q Consensus 376 ~L~~ell~~~~~--l~PT~EE~~~Reqvl~~Le~iI~~~---------~P-------~a~V~~FGS~atGl~lp~SDIDI 437 (630)
+++.+|.++++. +.||+||.++|++++.+|+++|++. +| +++|++|||+++|+++|+||||+
T Consensus 24 ~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDID~ 103 (530)
T 2hhp_A 24 KLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDT 103 (530)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEEE
T ss_pred hhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEecccccCCCCCCCceeE
Confidence 467788888887 8899999999999999999999862 12 69999999999999999999999
Q ss_pred EeecCCCccchHHHHHHHHHHHhh-CCCcceEEeeeeeeceEEEecccCCeeeeEEeecc--------------------
Q 006807 438 CLAINDSEINKSEVLLKLADILQS-DNLQNVQALTRARVPIVKLMDPVTGISCDICINNL-------------------- 496 (630)
Q Consensus 438 ~L~~~~~~i~k~eiL~~LakiLr~-~~~~nV~~I~~ARVPIIKf~d~~tgI~~DISfnN~-------------------- 496 (630)
+++.+.. +.+.+++..++.+|++ ..+.++..|..|+||||||+. +|++|||+|++.
T Consensus 104 ~v~~p~~-~~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~ip~~l~l~~~~~L~~l 180 (530)
T 2hhp_A 104 LVVVPKH-VTREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKF--SGISIDLICARLDQPQVPLSLTLSDKNLLRNL 180 (530)
T ss_dssp EEEECTT-CCHHHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSSSCBCTTCCSCCGGGGTTC
T ss_pred EEecCCc-CCHHHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEE--CCEeeEEEEeccccccCCcccCCCchhhhhcc
Confidence 9888653 4456788889999986 467899999999999999985 899999999764
Q ss_pred --------chhhchHHHHHHhhcChhhHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHHHHhhhcCCCcccccccccc
Q 006807 497 --------LAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEK 568 (630)
Q Consensus 497 --------~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~rGLnd~~~GgLSSYaLiLMVI~FLQ~~~PpILP~Lqel~~ 568 (630)
+|++.+++|..++..++.||.++++||+|||+||||+++.|+||||+|++||+++||.+ |
T Consensus 181 d~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~-P----------- 248 (530)
T 2hhp_A 181 DEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLY-P----------- 248 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHS-T-----------
T ss_pred chhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcC-C-----------
Confidence 46778899999999999999999999999999999999999999999999999999975 2
Q ss_pred cccceecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHhcCCCCCCceE
Q 006807 569 TYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVI 621 (630)
Q Consensus 569 ~~~~~Vd~~~~~f~d~~e~L~~~~s~N~~SLgeLLl~FF~yYs~~FDy~~~VI 621 (630)
..++++||..||+||+ .|||.+.|+
T Consensus 249 ---------------------------~~s~~~LL~~FF~~y~-~~dw~~pV~ 273 (530)
T 2hhp_A 249 ---------------------------NACSAVILNRFFIILS-EWNWPQPVI 273 (530)
T ss_dssp ---------------------------TCCHHHHHHHHHHHHH-HCCTTSCEE
T ss_pred ---------------------------CCCHHHHHHHHHHHHh-cCCCCCceE
Confidence 1367899999999999 699997655
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.28 E-value=5.3e-11 Score=129.18 Aligned_cols=162 Identities=22% Similarity=0.268 Sum_probs=123.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecceecCCCCCC-CCceEEeecCCCccchHHH----HH
Q 006807 379 APFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSK-SDIDVCLAINDSEINKSEV----LL 453 (630)
Q Consensus 379 ~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~-SDIDI~L~~~~~~i~k~ei----L~ 453 (630)
.-+.++++.+.|+++|.+.-+...+.|...|++ ++ +++.+.||++.|+++++ |||||.+.++... ...++ +.
T Consensus 5 ~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~-~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~-~~e~l~~~~l~ 81 (437)
T 1r89_A 5 EILEKALELVIPDEEEVRKGREAEEELRRRLDE-LG-VEYVFVGSYARNTWLKGSLEIDVFLLFPEEF-SKEELRERGLE 81 (437)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HT-CCEEEEHHHHHTCCCTTCCEEEEEEEECTTS-CHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh-CC-CeEEEeccccCCCcCCCCCCceEEEEcCCCC-CHHHHHHHHHH
Confidence 346788999999999999999999999999998 43 79999999999999985 8999999987542 22222 12
Q ss_pred HHHHHHhhCCCcceEEeeeeeeceEEEecccCCeeeeE--Eeecc------chhhchHHHHHHhhcChh-hHHHHHHHHH
Q 006807 454 KLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDI--CINNL------LAVVNTKLLRDYAQIDVR-LQQLAFIVKH 524 (630)
Q Consensus 454 ~LakiLr~~~~~nV~~I~~ARVPIIKf~d~~tgI~~DI--SfnN~------~Gv~nT~LL~~y~~~dPr-lR~LvllVK~ 524 (630)
.+.++++ +. .+..|..|.|+.. ..|+++|| |+.-. .++..|.+...|+..... ++.+|+++|+
T Consensus 82 ~~~e~l~-----~~-~~~ya~hpyV~~~--f~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLLK~ 153 (437)
T 1r89_A 82 IGKAVLD-----SY-EIRYAEHPYVHGV--VKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLKG 153 (437)
T ss_dssp HHHHHSS-----SE-EEEESSSEEEEEE--ETTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred HHHHHHH-----Hh-hhhccCCceEEEE--ecceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhhhhHHHHHHH
Confidence 2223333 12 3567778888875 35899998 33322 344556788888865332 8999999999
Q ss_pred HHHhcCCCCc--ccCCCChHHHHHHHHHH
Q 006807 525 WAKSRGVNVT--YQGTLSSYAYVLMCIHF 551 (630)
Q Consensus 525 WAK~rGLnd~--~~GgLSSYaLiLMVI~F 551 (630)
|+|..|++++ +.+|+|||++-||+++|
T Consensus 154 f~k~~~~ygse~k~~gfSsYllELLv~~y 182 (437)
T 1r89_A 154 FLKANGIYGAEYKVRGFSGYLCELLIVFY 182 (437)
T ss_dssp HHHHTTCBCCSTTTCCBCHHHHHHHHHHH
T ss_pred HHHhCCcCCCcccCCCCCHHHHHHHHHHH
Confidence 9999999887 46789999999999996
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.05 E-value=8.2e-09 Score=108.59 Aligned_cols=174 Identities=16% Similarity=0.312 Sum_probs=106.3
Q ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhh-CCC-------cEEEEecceecCCCCC-CCCceEEeecCCCc-cc--
Q 006807 381 FLAIY-ESLIPAEEEKAKQKKLLTLLEKLVCKE-WPD-------ARLYLYGSCANSFGVS-KSDIDVCLAINDSE-IN-- 447 (630)
Q Consensus 381 ll~~~-~~l~PT~EE~~~Reqvl~~Le~iI~~~-~P~-------a~V~~FGS~atGl~lp-~SDIDI~L~~~~~~-i~-- 447 (630)
+.+|. +.+.|+.++.+.-+..++.|...|++. +.+ .++...||++.|++++ .|||||+|.++... ..
T Consensus 11 l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~~~ 90 (349)
T 1px5_A 11 LDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFEDQ 90 (349)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTTHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchhhH
Confidence 55566 789999999998899999999999874 322 3678899999999997 48999999886532 11
Q ss_pred ---hHHHHHHHHHHHhh----CCCc-ceEEee-eeeece-EEEe--c--ccCCeeeeEE--eeccc--------------
Q 006807 448 ---KSEVLLKLADILQS----DNLQ-NVQALT-RARVPI-VKLM--D--PVTGISCDIC--INNLL-------------- 497 (630)
Q Consensus 448 ---k~eiL~~LakiLr~----~~~~-nV~~I~-~ARVPI-IKf~--d--~~tgI~~DIS--fnN~~-------------- 497 (630)
..+++..+.+.|.. ..+. .+++.. .-+.|. |.+. . ...+++|||. |.+..
T Consensus 91 ~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~~~~y~ 170 (349)
T 1px5_A 91 LRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYV 170 (349)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCChHHHH
Confidence 13566666666653 2232 233211 112442 3333 2 1246888874 33210
Q ss_pred -hh--------------hchHHHHHHhhc-ChhhHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHHHHhhhc
Q 006807 498 -AV--------------VNTKLLRDYAQI-DVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQR 555 (630)
Q Consensus 498 -Gv--------------~nT~LL~~y~~~-dPrlR~LvllVK~WAK~rGLnd~~~GgLSSYaLiLMVI~FLQ~~ 555 (630)
.+ ..+.+...|+.. ...++.|+++||+|-+..+.. ....+++||+|.+|++++....
T Consensus 171 ~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~~-~~~~~~ssy~lELL~~~a~e~~ 243 (349)
T 1px5_A 171 QLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKT-HGNKLPPQYALELLTVYAWEQG 243 (349)
T ss_dssp HHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTT-CSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhhc-ccCCCCChHHHHHHHHHHHHhC
Confidence 01 114455555543 347899999999999887642 2346899999999999988764
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.09 E-value=2.9e-05 Score=82.25 Aligned_cols=175 Identities=14% Similarity=0.169 Sum_probs=115.9
Q ss_pred hhcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhC--CC------cEEEEecceecCCCCCCC-CceEEeecCCC
Q 006807 374 IGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEW--PD------ARLYLYGSCANSFGVSKS-DIDVCLAINDS 444 (630)
Q Consensus 374 Id~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~--P~------a~V~~FGS~atGl~lp~S-DIDI~L~~~~~ 444 (630)
-..|+..|++=...+.|+++|...-..++.+|+.+|.... |+ ..|...||++.|+.+.++ |+|+||.+...
T Consensus 24 d~~~~~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~l 103 (364)
T 4at7_A 24 ETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKIL 103 (364)
T ss_dssp CHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSC
T ss_pred hHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCC
Confidence 3467788888889999999999999999999999988642 32 368999999999999876 89999887654
Q ss_pred ccch--HHHHHHHHHHHhhCC-CcceE--------EeeeeeeceEEEe-----------cccCCeeeeEEeeccchhhch
Q 006807 445 EINK--SEVLLKLADILQSDN-LQNVQ--------ALTRARVPIVKLM-----------DPVTGISCDICINNLLAVVNT 502 (630)
Q Consensus 445 ~i~k--~eiL~~LakiLr~~~-~~nV~--------~I~~ARVPIIKf~-----------d~~tgI~~DISfnN~~Gv~nT 502 (630)
+... ..++.++.+.|+... -..+. .|..+. +.+++. ++..=++..+|.....+++.+
T Consensus 104 PT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I~~~~-~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLaalRhA 182 (364)
T 4at7_A 104 PTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSD-ATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHA 182 (364)
T ss_dssp CBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEEECSS-CEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEEecCC-CcEEEEEEeCChhhccCChhHhcCHHHHHHHHHHhhhh
Confidence 4221 124456666665321 11111 122111 112221 111112223344555667778
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHHHHhhh
Q 006807 503 KLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQ 554 (630)
Q Consensus 503 ~LL~~y~~~dPrlR~LvllVK~WAK~rGLnd~~~GgLSSYaLiLMVI~FLQ~ 554 (630)
+++..-+ ....++.+++++|..+++. ...+.|+.|++-+|+.+.+-.
T Consensus 183 kWfq~na-~~s~v~~lIRIlkDlc~R~----~~w~pL~~waLELL~~~Ai~s 229 (364)
T 4at7_A 183 RWFEENA-SQSTVKVLIRLLKDLRIRF----PGFEPLTPWILDLLGHYAVMN 229 (364)
T ss_dssp HHHHHHC-CCHHHHHHHHHHHHHHHHC----GGGTTCCHHHHHHHHHHHHHS
T ss_pred HHHHhhc-cccccceeehhhHHHHHhc----CCcCCCCHHHHHHHHHHHHhc
Confidence 8777643 3567889999999966665 334689999999999887765
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.79 E-value=8.7e-05 Score=65.97 Aligned_cols=58 Identities=16% Similarity=0.317 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCccchHHHHHHHHHHHhh
Q 006807 402 LTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQS 461 (630)
Q Consensus 402 l~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k~eiL~~LakiLr~ 461 (630)
++.|..++++.++...|++|||++.|-+.++|||||+|..... .... .+..|...|..
T Consensus 14 ~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~-~~~~-~~~~l~~~l~~ 71 (114)
T 1no5_A 14 LAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEP-LDFL-ARDRLKEAFSE 71 (114)
T ss_dssp HHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSC-CCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCC-CCHH-HHHHHHHHHHh
Confidence 4456677777777789999999999999999999999987642 2322 23345555543
No 14
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.61 E-value=0.0001 Score=63.81 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEecceecCCCCCC-CCceEEeecCC
Q 006807 401 LLTLLEKLVCKEWPDARLYLYGSCANSFGVSK-SDIDVCLAIND 443 (630)
Q Consensus 401 vl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~-SDIDI~L~~~~ 443 (630)
+++.+.+.+++.++..++++|||++.|-+.++ |||||+|..+.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 46678888888888899999999999999999 99999987754
No 15
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.22 E-value=0.00045 Score=59.91 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCC
Q 006807 402 LTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAIND 443 (630)
Q Consensus 402 l~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~ 443 (630)
.+.++.++++ ++-..+++|||++.|-+.++|||||+|....
T Consensus 13 ~~~i~~l~~~-~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 13 REAVLSLCAR-HGAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HHHHHHHHHH-HTCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred HHHHHHHHHH-cCCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 3334444444 4567899999999999999999999997653
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.93 E-value=0.0011 Score=59.18 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHH---hhCCC-cEEEEecceecCCCCCCCCceEEeecCC
Q 006807 397 KQKKLLTLLEKLVC---KEWPD-ARLYLYGSCANSFGVSKSDIDVCLAIND 443 (630)
Q Consensus 397 ~Reqvl~~Le~iI~---~~~P~-a~V~~FGS~atGl~lp~SDIDI~L~~~~ 443 (630)
.+..+++.+++++. +.+++ ..+++|||++.|-+.++|||||+|....
T Consensus 11 ~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 11 SQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 34445555555444 34655 5799999999999999999999998754
No 17
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=96.16 E-value=0.0058 Score=62.21 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCCC-cEEEEecceecCCCCCCCCceEEeecCCCc
Q 006807 402 LTLLEKLVCKEWPD-ARLYLYGSCANSFGVSKSDIDVCLAINDSE 445 (630)
Q Consensus 402 l~~Le~iI~~~~P~-a~V~~FGS~atGl~lp~SDIDI~L~~~~~~ 445 (630)
+..+.+.|.+.+++ .+|++|||++.|-+.+.|||||+|.+...+
T Consensus 26 L~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~~~ 70 (272)
T 4ebj_A 26 IARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVSTQD 70 (272)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESSTT
T ss_pred HHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecCCC
Confidence 34444555566665 689999999999999999999999886543
No 18
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=95.79 E-value=0.039 Score=59.02 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=96.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhh--C---------C--------------------------C----cEEEEecc
Q 006807 385 YESLIPAEEEKAKQKKLLTLLEKLVCKE--W---------P--------------------------D----ARLYLYGS 423 (630)
Q Consensus 385 ~~~l~PT~EE~~~Reqvl~~Le~iI~~~--~---------P--------------------------~----a~V~~FGS 423 (630)
...+.|++||.+..+.++..++..++.+ | . . .-|.-+|+
T Consensus 20 H~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~ 99 (383)
T 4at7_B 20 HSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGL 99 (383)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHH
T ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEece
Confidence 4678999999999999999999888621 0 0 0 23677999
Q ss_pred eecCCCCCC-CCceEEeecCCCccchHHHHHHHHHHHh----hCC--CcceEE-eeeeeeceEEEecccCCeeeeEEeec
Q 006807 424 CANSFGVSK-SDIDVCLAINDSEINKSEVLLKLADILQ----SDN--LQNVQA-LTRARVPIVKLMDPVTGISCDICINN 495 (630)
Q Consensus 424 ~atGl~lp~-SDIDI~L~~~~~~i~k~eiL~~LakiLr----~~~--~~nV~~-I~~ARVPIIKf~d~~tgI~~DISfnN 495 (630)
++-|+-+.+ -++|+||+....+ ..+++.++++.|. ... -..|.. ...|.+=| .......+.|-|++..
T Consensus 100 laKGlLLkGd~~veLVvlck~kP--T~~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i--~~~~~p~~~v~I~lTS 175 (383)
T 4at7_B 100 VAKGLLLKGDLDLELVLLCKEKP--TTALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVI--KNTKEPPLSLTIHLTS 175 (383)
T ss_dssp HHHTCCCTTCCEEEEEEEESSCC--BHHHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEE--ECSSSSCCEEEEEEEC
T ss_pred ecccceECCCCceeEEEEeCCCC--cHHHHHHHHHHHHHHHhhccCCceEEeecCCcceEEE--ecCCCCCeEEEEEECC
Confidence 999999975 5899998876543 3567777766553 211 111211 11221111 1111122444444432
Q ss_pred ---------------------------------cchhhchHHHHHHhhcChhhHHHHHHHHHHHHhcCCCCcccCCCChH
Q 006807 496 ---------------------------------LLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSY 542 (630)
Q Consensus 496 ---------------------------------~~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~rGLnd~~~GgLSSY 542 (630)
.-+++.++++..-+..-..+..|++++|..+++. .....|+.|
T Consensus 176 p~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~----~~~~pL~~w 251 (383)
T 4at7_B 176 PVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV----PTWGPLRGW 251 (383)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHC----GGGGGGTTH
T ss_pred cccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhc----CCcCCCcHh
Confidence 2223333333332222235678999999966655 234679999
Q ss_pred HHHHHHHHHhhh
Q 006807 543 AYVLMCIHFLQQ 554 (630)
Q Consensus 543 aLiLMVI~FLQ~ 554 (630)
++-+|+.+.+-.
T Consensus 252 aLELL~~~ai~s 263 (383)
T 4at7_B 252 PLELLCEKSIGT 263 (383)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC
Confidence 999999987753
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=95.72 E-value=0.0068 Score=60.88 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhCC--CcEEEEecceecCCCCCCCCceEEeecCC
Q 006807 400 KLLTLLEKLVCKEWP--DARLYLYGSCANSFGVSKSDIDVCLAIND 443 (630)
Q Consensus 400 qvl~~Le~iI~~~~P--~a~V~~FGS~atGl~lp~SDIDI~L~~~~ 443 (630)
.++..+...+.+.++ -..|++|||++.|-+.++|||||+|....
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 14 KIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 344455555555666 46899999999999999999999888754
No 20
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=92.18 E-value=0.57 Score=48.32 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCC---ccchHHHHHHHHHHHhhCCCcceEEeeeee
Q 006807 398 QKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDS---EINKSEVLLKLADILQSDNLQNVQALTRAR 474 (630)
Q Consensus 398 Reqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~---~i~k~eiL~~LakiLr~~~~~nV~~I~~AR 474 (630)
.+.+++.|.+.+++.-.-..|.++||+++|-....||+||++.+... .......+..+...+- .....
T Consensus 24 ~~e~l~~I~~~~~~d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~~~f~~~~Wl~~fG~~~~---------~f~~~ 94 (287)
T 3jz0_A 24 QKELIANVKNLTESDERITACMMYGSFTKGEGDQYSDIEFYIFLKHSITSNFDSSNWLFDVAPYLM---------LYKNE 94 (287)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGTTTCCHHHHHHHHCCEEE---------EEECT
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEECCccCCCCCCccceeEEEEEcCcchhhhhhHHHHHHhhhhhe---------Eeecc
Confidence 34566666666665322346899999999998899999999987652 2222333433332211 01111
Q ss_pred ec--eEEEecccCCeeeeEEeeccchh
Q 006807 475 VP--IVKLMDPVTGISCDICINNLLAV 499 (630)
Q Consensus 475 VP--IIKf~d~~tgI~~DISfnN~~Gv 499 (630)
.. ++-| ..|+.||+.|-....+
T Consensus 95 ~~~~l~lF---~Dg~riDl~l~~~~~l 118 (287)
T 3jz0_A 95 YGTEVVIF---DNLIRGEFHFLSEKDM 118 (287)
T ss_dssp TSCEEEEE---TTSCEEEEEEEEGGGG
T ss_pred cceEEEEe---cCCcEEEEEEeeHHHH
Confidence 11 3344 3689999998655433
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=92.04 E-value=0.75 Score=48.23 Aligned_cols=132 Identities=14% Similarity=0.045 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCccch---HHHHHHHHHHHhhCCC-cceEEeeeee
Q 006807 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINK---SEVLLKLADILQSDNL-QNVQALTRAR 474 (630)
Q Consensus 399 eqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k---~eiL~~LakiLr~~~~-~nV~~I~~AR 474 (630)
..+.+.|.+.++...|.+++.+-||+.-|-.+ ..||||+|..+...... ..++..+...|...++ ..+......+
T Consensus 156 ~~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k 234 (335)
T 2fmp_A 156 LQMQDIVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETK 234 (335)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSE
T ss_pred HHHHHHHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCce
Confidence 45566677777788889999999999988665 56999999876322111 1345666666766543 3333333334
Q ss_pred eceE-EEeccc-----CCeeeeEEeeccchhhchHHHHHHhhcChhhHHHHHHHHHHHHhcCCCCcccC
Q 006807 475 VPIV-KLMDPV-----TGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQG 537 (630)
Q Consensus 475 VPII-Kf~d~~-----tgI~~DISfnN~~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~rGLnd~~~G 537 (630)
+=+| ++.... .++.|||-+......-.+-+-.+ -. +...+-++.||+++|+.=+..|
T Consensus 235 ~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~~~~aLl~fT---GS---~~fnr~lR~~A~~kG~kl~e~G 297 (335)
T 2fmp_A 235 FMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFT---GS---DIFNKNMRAHALEKGFTINEYT 297 (335)
T ss_dssp EEEEECCCCCTTCCCCCCEEEEEEECCGGGHHHHHHHHH---CC---HHHHHHHHHHHHHTTEEECSSC
T ss_pred EEEEEEeCCcccccCCCceEEEEEEECHHHHHHHHHHhh---CC---HHHHHHHHHHHHHcCCcccccc
Confidence 3332 222111 27999999886544433322211 11 2334678889998887433333
No 22
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=90.62 E-value=1.4 Score=46.15 Aligned_cols=131 Identities=13% Similarity=0.120 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCccchHHHHHHHHHHHhhCCC-cceEEe----e-e
Q 006807 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNL-QNVQAL----T-R 472 (630)
Q Consensus 399 eqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k~eiL~~LakiLr~~~~-~nV~~I----~-~ 472 (630)
..+.+.|.+.++...|.+.+.+-||+.-|-.+ ..||||+|..+.... ...++..+...|...++ ..+... . .
T Consensus 153 ~~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~-~~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~ 230 (335)
T 2bcq_A 153 TEIEQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRS-HRGIFSRLLDSLRQEGFLTDDLVSQEENGQQ 230 (335)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSST-TTTCHHHHHHHHHHTTCEEEEEECCTTSTTC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCchh-hhhHHHHHHHHHHhCCchHHHhhccccCCCC
Confidence 45566777777888889999999999988766 569999998765432 23456677777766543 221111 0 1
Q ss_pred eee-ceEEEec-ccCCeeeeEEeeccchhhchHHHHHHhhcChhhHHHHHHHHHHHHhcCCCCcccC
Q 006807 473 ARV-PIVKLMD-PVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQG 537 (630)
Q Consensus 473 ARV-PIIKf~d-~~tgI~~DISfnN~~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~rGLnd~~~G 537 (630)
.++ =|.++.. ...++.|||-+......-.+-+-.+ -. +...+-++.||+++|+.=+..|
T Consensus 231 ~k~~~v~~l~~~~~~~~rVDl~~vp~~~~g~ALl~fT---GS---~~fnr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 231 QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFT---GS---AHFNRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEECCSSTTCCCEEEEEEECCGGGHHHHHHHHH---CC---HHHHHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEccCCCCCceEEEEEEECHHHHHHHHHHhh---CC---HHHHHHHHHHHHHcCCCccccc
Confidence 122 1112211 1267899998876544433322211 11 2344678999999887543333
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=86.68 E-value=3.3 Score=43.81 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCccchHHHHHHHHHHHhhCC
Q 006807 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDN 463 (630)
Q Consensus 399 eqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k~eiL~~LakiLr~~~ 463 (630)
+.+.+.|.+.++...|.+++.+-||+.-|-.+ ..||||+|..+..... ..++..+...|...+
T Consensus 160 ~~i~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~ 222 (360)
T 2ihm_A 160 EALQQLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQG 222 (360)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCC
Confidence 45666777777788889999999999988766 5699999987654322 246777777776654
No 24
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=82.80 E-value=13 Score=39.70 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCccch-HHHHHHHHHHHhhCC
Q 006807 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINK-SEVLLKLADILQSDN 463 (630)
Q Consensus 399 eqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k-~eiL~~LakiLr~~~ 463 (630)
+.+.+.|.+.++...|.+++.+-||+.-|-.+ ..||||+|..+...... ..++..+...|...+
T Consensus 180 ~~ia~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~ 244 (381)
T 1jms_A 180 EAVSMLVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQG 244 (381)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCC
Confidence 35566667777778889999999999988766 45999999876543211 236667777776654
No 25
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=78.73 E-value=10 Score=42.20 Aligned_cols=120 Identities=15% Similarity=0.105 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCccchHHHHHHHHHHHhhCC-CcceEEeeeeeece
Q 006807 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDN-LQNVQALTRARVPI 477 (630)
Q Consensus 399 eqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k~eiL~~LakiLr~~~-~~nV~~I~~ARVPI 477 (630)
+.+.+.|.+.++..-+..++.+-||+.-|-.+ ..||||++..+.. .. +.+.|.+.. +..+......++-+
T Consensus 164 ~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~~----~~----v~~~l~~~~~~~~~~~~g~~k~~~ 234 (575)
T 3b0x_A 164 LSLARSLLEAIRALPGVERAELCGSARRYKDT-VGDLDFLVASREG----ER----AVEGFVRLPQVKEVYAKGKERATV 234 (575)
T ss_dssp HHHHHHHHHHHHTSTTCCEEEECHHHHTTCSE-ESSEEEEEECSSH----HH----HHHHHHTSTTEEEEEEECSSEEEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEEccccccCCCc-cCCeEEEEeCCCH----HH----HHHHHHhCcchhhHhhcCCCceEE
Confidence 34556666777777778999999999988665 4599999987542 22 334444332 22221111222222
Q ss_pred EEEecccCCeeeeEEeeccchhhchHHHHHHhhcChhhHHHHHHHHHHHHhcCCCCcccC
Q 006807 478 VKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQG 537 (630)
Q Consensus 478 IKf~d~~tgI~~DISfnN~~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~rGLnd~~~G 537 (630)
++ ..++.|||-+......-.+-+-.+ -. +...+-++.||+++|+.=+..|
T Consensus 235 -~~---~~~~rvDl~~~~~~~~~~al~~~T---Gs---~~~n~~lR~~A~~~g~~l~~~g 284 (575)
T 3b0x_A 235 -FL---KNGLQVDLRVVPPESYGAGLQYLT---GS---AAHSIRLRALAQEKGLKLSEYG 284 (575)
T ss_dssp -EE---TTSCEEEEEEECGGGHHHHHHHHH---CC---HHHHHHHHHHHHHTTCEEETTE
T ss_pred -Ec---cCCcEEEEEEECHHHHHHHHHHhh---CC---HHHHHHHHHHHHHcCCCcchhh
Confidence 22 358999999886544433322211 11 2344678999999888544444
No 26
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=73.57 E-value=5.1 Score=38.36 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=60.1
Q ss_pred CCCcEEEEecceecCCCCCCCCceEEeecCCCccchHHHHHHHHHHHhh--CCC-c-ceEEeeeeeeceEEEecccCCee
Q 006807 413 WPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQS--DNL-Q-NVQALTRARVPIVKLMDPVTGIS 488 (630)
Q Consensus 413 ~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k~eiL~~LakiLr~--~~~-~-nV~~I~~ARVPIIKf~d~~tgI~ 488 (630)
+|++++.+-||+.-|-.+ ..|||+++..+.. ..+.+.|.+ .++ . ++......++-+ ++.....++.
T Consensus 29 ~~g~~v~iaGS~RRgket-~gDiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~~~~~r 98 (174)
T 1jaj_A 29 ILSKNIVAVGSLRREEKM-LNDVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWEKKTYQ 98 (174)
T ss_dssp ECTTTEEEEEHHHHTCSE-ECCEEEEEEESSH--------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESSSCCEE
T ss_pred CCCcEEEEeccccCCCCC-CCCEEEEEecCCH--------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCCCCceE
Confidence 467899999999988766 4599999987541 223334444 322 2 222111222212 3321126899
Q ss_pred eeEEeeccchhhchHHHHHHhhcChhhHHHHHHHHHHHHhcCCCCc
Q 006807 489 CDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVT 534 (630)
Q Consensus 489 ~DISfnN~~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~rGLnd~ 534 (630)
|||-+......-.+-+-.+ -. +....-++.||+++|+.=+
T Consensus 99 VDl~~vp~~~fg~ALl~fT---GS---k~hn~~lR~~A~~kG~~L~ 138 (174)
T 1jaj_A 99 LDLFTALAEEKPYAIFHFT---GP---VSYLIRIRAALKKKNYKLN 138 (174)
T ss_dssp EEEEEEETTCHHHHHHHHH---SC---HHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEeCHHHHHHHHHHhH---CC---HHHHHHHHHHHHHcCCCcC
Confidence 9999886544443332222 11 2334677889999877433
No 27
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=49.09 E-value=13 Score=37.96 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecceecCC--CCCCCCceEEeecCC
Q 006807 400 KLLTLLEKLVCKEWPDARLYLYGSCANSF--GVSKSDIDVCLAIND 443 (630)
Q Consensus 400 qvl~~Le~iI~~~~P~a~V~~FGS~atGl--~lp~SDIDI~L~~~~ 443 (630)
.+++.|.++.+..-.=-.|.+.||.+++- .-.-||+||++.+..
T Consensus 8 em~~~i~~~a~~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcCCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 45666666665432123588999999965 677899999998864
No 28
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=44.60 E-value=89 Score=29.29 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=29.3
Q ss_pred CcEEEEecceec---CCCCCCCCceEEeecCCCccchHHHHHHHHHHHhhCC
Q 006807 415 DARLYLYGSCAN---SFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDN 463 (630)
Q Consensus 415 ~a~V~~FGS~at---Gl~lp~SDIDI~L~~~~~~i~k~eiL~~LakiLr~~~ 463 (630)
++...+.||++. |.....-||||.+.. +-..++.++|...+
T Consensus 33 ~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~--------~da~~~~~~L~~~g 76 (169)
T 2fcl_A 33 XVNWVVTGSLSFALQGVPVEVHDIDIQTDE--------EGAYEIERIFSEFV 76 (169)
T ss_dssp SCCEEEEHHHHHHHTTCCCCCCSEEEEECH--------HHHHHHHHHTGGGE
T ss_pred CCCEEEeHHHHHHHcCCCCCCCccEEEecc--------cCHHHHHHHHHHHh
Confidence 788999999974 677777899998832 23456667776543
No 29
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=33.10 E-value=67 Score=34.63 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=31.8
Q ss_pred CcEEEEecceecCCCCCCCCceEEeecCCC--------ccchHHHHHHHHHHH
Q 006807 415 DARLYLYGSCANSFGVSKSDIDVCLAINDS--------EINKSEVLLKLADIL 459 (630)
Q Consensus 415 ~a~V~~FGS~atGl~lp~SDIDI~L~~~~~--------~i~k~eiL~~LakiL 459 (630)
...|..+||+.-+=-...||||++++.+.. .+...+++.+|++.+
T Consensus 154 ~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l 206 (440)
T 1v4a_A 154 PLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRL 206 (440)
T ss_dssp CCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHH
T ss_pred CEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHH
Confidence 367899999998888899999988887532 123345666665543
No 30
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, enterococcus FAE PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis} SCOP: d.218.1.14
Probab=23.36 E-value=2.8e+02 Score=25.94 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecceec-CCCCCCCCceEEeecCCCccchHHHHHHHHHHHhhCCCcceEE-eeeeeec
Q 006807 399 KKLLTLLEKLVCKEWPDARLYLYGSCAN-SFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQA-LTRARVP 476 (630)
Q Consensus 399 eqvl~~Le~iI~~~~P~a~V~~FGS~at-Gl~lp~SDIDI~L~~~~~~i~k~eiL~~LakiLr~~~~~nV~~-I~~ARVP 476 (630)
++...+|..++... -++|.=.||++- |+.- .-.|||.|.+..... +..+...|...++.-.-. -...|.=
T Consensus 20 ~~e~~~l~~~l~~~--~~~I~HIGSTsVpGl~A-KPIIDI~v~V~~~~~-----~~~~~~~L~~~Gy~~~~e~~~~~r~~ 91 (173)
T 2nrk_A 20 EEEAQALKQILKEN--CLKVEHIGSTSVPNLAA-KPIIDFLVIVEEIEK-----VDLLQWEFERIGYEYMGEFGLSGRRY 91 (173)
T ss_dssp HHHHHHHHHHHGGG--EEEEEEESGGGSTTCCB-CSCEEEEEEESCSGG-----GGGGHHHHHHTTCEECTTTTSTTEEE
T ss_pred HHHHHHHHHhcCCc--cceEEEECCCCCCCCCc-CCeeEEEeccCCHHH-----HHHHHHHHHHCCCEECCCCCCCccEE
Confidence 34445555555433 378888999964 6554 347887777754321 112333444444321100 0001111
Q ss_pred eEEEecccCCeeeeEEeecc-chhhchHHHHHHhhcChhhHHHHHHHHHHHHhc
Q 006807 477 IVKLMDPVTGISCDICINNL-LAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSR 529 (630)
Q Consensus 477 IIKf~d~~tgI~~DISfnN~-~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~r 529 (630)
..|- +...-..+-|+.... ..+..--+++.|+..+|..+.-.--+|.=+...
T Consensus 92 f~k~-~~~r~~hlHv~~~g~~~~~~~~L~FRDyLr~~p~~~~~Y~~lK~~la~~ 144 (173)
T 2nrk_A 92 LRKG-PIKRTHHVHIYQFDNTQEILRHLAFRNYLRENPAIATTYGTLKKQLAQA 144 (173)
T ss_dssp EEEC-SSSCCEEEEEEETTCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTT
T ss_pred EEcC-CCCceEEEEEEecCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 1111 111223445555444 456677789999999999999999999877655
No 31
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=22.52 E-value=1.3e+02 Score=32.94 Aligned_cols=28 Identities=18% Similarity=0.042 Sum_probs=23.7
Q ss_pred cEEEEecceecCCCCCCCCceEEeecCC
Q 006807 416 ARLYLYGSCANSFGVSKSDIDVCLAIND 443 (630)
Q Consensus 416 a~V~~FGS~atGl~lp~SDIDI~L~~~~ 443 (630)
..|.-+|++.-+=-...||||++++.+.
T Consensus 235 ~aviamGklGg~EL~~~SDiDlifv~~~ 262 (498)
T 3k7d_A 235 FAVVGYGKLGGWELGYSSDLDLIFLHDC 262 (498)
T ss_dssp EEEEEEHHHHTTCCCTTCCEEEEEEECC
T ss_pred EEEEeeccccccccCcccccceeeeecC
Confidence 5788899998887788999999988754
Done!