Query 006808
Match_columns 630
No_of_seqs 589 out of 3918
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 14:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0291 WD40-repeat-containing 100.0 1.9E-51 4.1E-56 408.8 42.0 492 2-586 306-858 (893)
2 KOG0319 WD40-repeat-containing 100.0 4.9E-48 1.1E-52 384.3 25.3 516 2-585 104-773 (775)
3 KOG0271 Notchless-like WD40 re 100.0 2.9E-46 6.3E-51 344.4 23.4 322 3-378 115-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-43 3E-48 331.1 22.2 282 2-378 174-458 (459)
5 KOG0306 WD40-repeat-containing 100.0 6.5E-41 1.4E-45 333.7 28.2 461 4-590 374-865 (888)
6 KOG0286 G-protein beta subunit 100.0 6.9E-38 1.5E-42 279.8 28.7 280 4-378 56-343 (343)
7 KOG0271 Notchless-like WD40 re 100.0 3.1E-39 6.6E-44 298.1 20.2 285 62-381 113-440 (480)
8 KOG0310 Conserved WD40 repeat- 100.0 1.7E-35 3.6E-40 282.4 27.3 445 3-582 26-483 (487)
9 KOG4547 WD40 repeat-containing 100.0 1.6E-34 3.6E-39 283.0 30.5 493 14-576 2-525 (541)
10 KOG0291 WD40-repeat-containing 100.0 6.8E-33 1.5E-37 276.8 40.4 324 5-380 147-508 (893)
11 KOG0315 G-protein beta subunit 100.0 2.5E-34 5.3E-39 251.3 25.6 274 18-382 11-290 (311)
12 KOG0279 G protein beta subunit 100.0 1.8E-33 4E-38 250.1 28.5 287 3-380 15-313 (315)
13 KOG0295 WD40 repeat-containing 100.0 2.5E-34 5.5E-39 264.4 21.7 279 4-378 109-404 (406)
14 KOG0318 WD40 repeat stress pro 100.0 1.6E-32 3.5E-37 263.7 34.9 359 4-382 60-562 (603)
15 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-34 2.6E-39 271.5 18.1 235 4-280 218-458 (459)
16 KOG0284 Polyadenylation factor 100.0 5.9E-35 1.3E-39 272.2 15.9 280 4-379 97-379 (464)
17 KOG0285 Pleiotropic regulator 100.0 7.1E-33 1.5E-37 254.0 23.0 284 6-380 154-439 (460)
18 KOG0263 Transcription initiati 100.0 5E-33 1.1E-37 280.7 23.0 239 9-286 382-653 (707)
19 KOG0265 U5 snRNP-specific prot 100.0 2.6E-32 5.7E-37 245.2 24.1 285 3-379 47-337 (338)
20 KOG0279 G protein beta subunit 100.0 9.2E-32 2E-36 239.3 26.3 240 5-282 65-313 (315)
21 KOG0286 G-protein beta subunit 100.0 1.3E-31 2.8E-36 239.7 26.3 232 9-280 101-343 (343)
22 KOG0266 WD40 repeat-containing 100.0 2.1E-31 4.5E-36 277.3 31.0 280 4-379 160-453 (456)
23 KOG0315 G-protein beta subunit 100.0 3.5E-31 7.6E-36 231.6 24.4 249 3-293 40-299 (311)
24 KOG0296 Angio-associated migra 100.0 6.8E-31 1.5E-35 242.1 27.2 323 3-379 64-397 (399)
25 KOG0273 Beta-transducin family 100.0 7.5E-31 1.6E-35 249.2 26.2 336 3-379 178-522 (524)
26 KOG0263 Transcription initiati 100.0 3.1E-31 6.8E-36 267.8 22.8 200 3-233 451-652 (707)
27 KOG0293 WD40 repeat-containing 100.0 5.2E-31 1.1E-35 246.0 21.4 282 4-380 225-513 (519)
28 KOG0276 Vesicle coat complex C 100.0 1.1E-30 2.3E-35 255.8 24.5 247 3-290 13-265 (794)
29 KOG0316 Conserved WD40 repeat- 100.0 1.8E-30 3.9E-35 225.3 22.7 248 2-293 16-268 (307)
30 cd00200 WD40 WD40 domain, foun 100.0 2E-29 4.3E-34 248.8 33.2 278 3-378 9-289 (289)
31 PLN00181 protein SPA1-RELATED; 100.0 2.2E-29 4.7E-34 282.1 37.2 304 3-379 483-792 (793)
32 KOG0282 mRNA splicing factor [ 100.0 1.1E-30 2.4E-35 249.1 18.1 283 4-378 215-503 (503)
33 KOG0273 Beta-transducin family 100.0 1.4E-29 3.1E-34 240.6 25.1 248 4-294 236-494 (524)
34 KOG0281 Beta-TrCP (transducin 100.0 3.3E-31 7.2E-36 242.0 12.3 279 2-382 196-479 (499)
35 KOG0645 WD40 repeat protein [G 100.0 6.3E-29 1.4E-33 220.3 26.1 289 62-380 12-311 (312)
36 KOG0275 Conserved WD40 repeat- 100.0 2.5E-30 5.5E-35 234.1 15.2 284 9-378 217-507 (508)
37 KOG0318 WD40 repeat stress pro 100.0 6.4E-28 1.4E-32 232.3 32.2 316 10-380 195-602 (603)
38 KOG0278 Serine/threonine kinas 100.0 5.8E-30 1.3E-34 224.0 14.8 278 3-380 14-297 (334)
39 KOG0295 WD40 repeat-containing 100.0 3E-29 6.6E-34 231.0 20.3 236 5-281 152-405 (406)
40 KOG0284 Polyadenylation factor 100.0 1.1E-29 2.5E-34 237.0 15.0 240 3-281 138-379 (464)
41 KOG0306 WD40-repeat-containing 100.0 3.1E-28 6.6E-33 243.6 25.6 316 5-380 67-580 (888)
42 KOG1446 Histone H3 (Lys4) meth 100.0 4.9E-27 1.1E-31 213.6 30.4 250 3-293 14-273 (311)
43 KOG0319 WD40-repeat-containing 100.0 3.6E-28 7.9E-33 243.0 25.1 271 12-378 330-617 (775)
44 KOG0292 Vesicle coat complex C 100.0 5.5E-28 1.2E-32 245.5 24.9 251 3-292 9-290 (1202)
45 KOG0643 Translation initiation 100.0 2.3E-27 4.9E-32 209.9 21.8 277 86-380 22-317 (327)
46 KOG0281 Beta-TrCP (transducin 100.0 1.2E-28 2.6E-33 225.3 13.2 236 3-286 237-481 (499)
47 KOG0285 Pleiotropic regulator 100.0 1.4E-27 2.9E-32 219.4 19.2 242 61-382 148-391 (460)
48 KOG0266 WD40 repeat-containing 100.0 7.5E-27 1.6E-31 243.2 27.2 237 5-281 205-453 (456)
49 KOG0283 WD40 repeat-containing 100.0 6.1E-27 1.3E-31 238.9 25.1 259 3-286 267-580 (712)
50 KOG0645 WD40 repeat protein [G 100.0 6.6E-26 1.4E-30 201.2 27.8 270 9-326 18-308 (312)
51 KOG0640 mRNA cleavage stimulat 100.0 8.9E-28 1.9E-32 216.6 16.0 302 3-379 112-425 (430)
52 KOG1407 WD40 repeat protein [F 100.0 2.5E-26 5.4E-31 202.8 24.2 246 3-288 20-267 (313)
53 KOG0277 Peroxisomal targeting 100.0 9.8E-27 2.1E-31 204.5 21.2 283 8-378 11-307 (311)
54 PTZ00421 coronin; Provisional 100.0 9.8E-26 2.1E-30 233.6 30.9 255 12-288 27-296 (493)
55 KOG0282 mRNA splicing factor [ 99.9 1.9E-27 4.1E-32 227.1 15.2 243 67-380 216-462 (503)
56 KOG0316 Conserved WD40 repeat- 99.9 3.4E-26 7.5E-31 198.8 21.0 264 86-381 29-300 (307)
57 KOG0265 U5 snRNP-specific prot 99.9 7.2E-26 1.6E-30 203.9 23.4 237 2-279 89-335 (338)
58 KOG0276 Vesicle coat complex C 99.9 2.6E-26 5.6E-31 225.3 22.3 236 3-278 55-295 (794)
59 KOG0289 mRNA splicing factor [ 99.9 9.2E-26 2E-30 212.5 24.9 278 9-378 223-504 (506)
60 KOG0313 Microtubule binding pr 99.9 6.9E-26 1.5E-30 210.1 23.6 271 17-327 115-416 (423)
61 KOG0277 Peroxisomal targeting 99.9 3.1E-26 6.6E-31 201.4 18.3 236 11-281 66-308 (311)
62 cd00200 WD40 WD40 domain, foun 99.9 6.2E-25 1.3E-29 216.6 30.1 233 9-280 55-289 (289)
63 KOG0296 Angio-associated migra 99.9 1.7E-25 3.7E-30 206.5 23.8 274 86-382 76-358 (399)
64 KOG0305 Anaphase promoting com 99.9 1.2E-25 2.5E-30 224.1 24.3 272 12-381 184-462 (484)
65 PTZ00420 coronin; Provisional 99.9 1.1E-24 2.3E-29 226.7 32.2 228 23-284 50-295 (568)
66 KOG0292 Vesicle coat complex C 99.9 8E-26 1.7E-30 229.9 23.0 236 3-280 51-319 (1202)
67 KOG0274 Cdc4 and related F-box 99.9 1.8E-25 3.8E-30 231.7 25.8 236 9-291 212-450 (537)
68 KOG1539 WD repeat protein [Gen 99.9 7.2E-24 1.6E-28 215.0 35.9 313 12-380 165-648 (910)
69 PLN00181 protein SPA1-RELATED; 99.9 1.5E-24 3.3E-29 243.1 33.0 238 4-281 533-792 (793)
70 KOG0310 Conserved WD40 repeat- 99.9 3.3E-25 7.1E-30 212.3 21.6 231 9-279 72-306 (487)
71 KOG0305 Anaphase promoting com 99.9 5.8E-25 1.2E-29 219.2 24.1 240 4-284 218-463 (484)
72 KOG0308 Conserved WD40 repeat- 99.9 2.2E-25 4.8E-30 220.0 20.3 319 15-381 35-394 (735)
73 KOG0772 Uncharacterized conser 99.9 2E-25 4.3E-30 214.5 18.9 283 3-325 167-483 (641)
74 KOG0288 WD40 repeat protein Ti 99.9 6.4E-26 1.4E-30 212.4 15.0 277 4-377 176-458 (459)
75 KOG0973 Histone transcription 99.9 5.9E-25 1.3E-29 230.1 23.4 297 9-381 17-356 (942)
76 KOG0275 Conserved WD40 repeat- 99.9 6E-26 1.3E-30 205.9 13.2 238 1-280 261-507 (508)
77 KOG0641 WD40 repeat protein [G 99.9 1E-23 2.2E-28 182.1 24.0 298 3-379 32-348 (350)
78 PTZ00421 coronin; Provisional 99.9 2.3E-23 5E-28 216.0 31.0 203 3-234 75-294 (493)
79 KOG0313 Microtubule binding pr 99.9 2.8E-24 6.1E-29 199.4 21.3 239 3-282 144-418 (423)
80 KOG2096 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 191.0 24.2 286 3-377 86-399 (420)
81 KOG0274 Cdc4 and related F-box 99.9 4.4E-24 9.6E-29 221.4 24.7 239 2-290 248-490 (537)
82 KOG1408 WD40 repeat protein [F 99.9 2.9E-24 6.3E-29 213.7 21.4 335 8-380 327-713 (1080)
83 KOG0268 Sof1-like rRNA process 99.9 2.8E-25 6.1E-30 204.8 13.0 280 62-379 64-344 (433)
84 KOG0294 WD40 repeat-containing 99.9 1.3E-23 2.9E-28 190.5 22.3 241 3-285 43-284 (362)
85 KOG0973 Histone transcription 99.9 9.4E-24 2E-28 221.2 24.6 243 3-284 69-357 (942)
86 KOG0278 Serine/threonine kinas 99.9 5.7E-25 1.2E-29 192.8 13.0 242 3-286 59-301 (334)
87 KOG0641 WD40 repeat protein [G 99.9 8.8E-23 1.9E-27 176.4 26.1 245 3-281 89-348 (350)
88 KOG0288 WD40 repeat protein Ti 99.9 2.4E-24 5.2E-29 201.9 17.5 233 4-279 220-458 (459)
89 PTZ00420 coronin; Provisional 99.9 1.1E-22 2.5E-27 211.6 30.7 183 92-283 50-249 (568)
90 KOG0643 Translation initiation 99.9 9.9E-24 2.1E-28 187.0 19.4 271 4-325 11-313 (327)
91 KOG0300 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 189.9 20.4 277 12-379 155-475 (481)
92 KOG0293 WD40 repeat-containing 99.9 8.8E-24 1.9E-28 197.9 18.6 241 3-283 269-514 (519)
93 KOG0647 mRNA export protein (c 99.9 1.1E-22 2.4E-27 183.6 24.7 247 5-288 29-287 (347)
94 KOG0299 U3 snoRNP-associated p 99.9 9.1E-24 2E-28 200.9 18.5 295 5-377 144-453 (479)
95 KOG0283 WD40 repeat-containing 99.9 2.6E-23 5.7E-28 212.6 21.4 202 114-379 366-575 (712)
96 KOG1446 Histone H3 (Lys4) meth 99.9 3.4E-22 7.4E-27 182.2 24.2 244 115-385 12-267 (311)
97 KOG0772 Uncharacterized conser 99.9 7.3E-23 1.6E-27 197.0 20.8 291 65-378 167-485 (641)
98 KOG0294 WD40 repeat-containing 99.9 4.8E-22 1E-26 180.5 23.8 223 86-380 53-281 (362)
99 KOG4283 Transcription-coupled 99.9 2.8E-22 6.1E-27 180.1 21.8 250 114-379 98-364 (397)
100 KOG0264 Nucleosome remodeling 99.9 2.2E-22 4.8E-27 191.7 21.6 254 4-282 125-404 (422)
101 KOG0269 WD40 repeat-containing 99.9 7.5E-23 1.6E-27 206.1 19.1 238 11-282 45-296 (839)
102 KOG0646 WD40 repeat protein [G 99.9 3.2E-22 6.8E-27 190.9 22.1 281 22-382 12-309 (476)
103 KOG0289 mRNA splicing factor [ 99.9 8.6E-22 1.9E-26 186.0 22.9 237 9-281 265-505 (506)
104 KOG0301 Phospholipase A2-activ 99.9 5.3E-22 1.1E-26 197.8 20.7 267 4-327 15-286 (745)
105 KOG1332 Vesicle coat complex C 99.9 6.8E-22 1.5E-26 173.2 18.6 237 12-281 18-285 (299)
106 KOG0650 WD40 repeat nucleolar 99.9 8.2E-22 1.8E-26 193.1 21.2 288 3-377 400-732 (733)
107 KOG1274 WD40 repeat protein [G 99.9 2.2E-21 4.7E-26 199.5 25.3 235 10-283 18-263 (933)
108 KOG0269 WD40 repeat-containing 99.9 1.1E-22 2.4E-27 204.9 15.4 235 12-281 94-339 (839)
109 KOG1407 WD40 repeat protein [F 99.9 5.8E-21 1.3E-25 169.0 24.3 226 4-273 65-293 (313)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4.2E-25 186.8 31.3 269 17-381 1-280 (300)
111 KOG0640 mRNA cleavage stimulat 99.9 5.6E-22 1.2E-26 179.3 17.5 242 4-281 173-425 (430)
112 KOG1273 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 175.8 21.4 246 8-288 26-286 (405)
113 KOG2055 WD40 repeat protein [G 99.9 2.4E-21 5.1E-26 184.5 22.2 290 3-380 213-512 (514)
114 KOG0299 U3 snoRNP-associated p 99.9 3E-21 6.6E-26 183.8 21.2 225 9-271 206-444 (479)
115 KOG1036 Mitotic spindle checkp 99.9 9.2E-21 2E-25 172.0 23.1 247 5-293 15-273 (323)
116 KOG0639 Transducin-like enhanc 99.9 4.7E-22 1E-26 190.7 15.1 272 10-323 424-698 (705)
117 KOG1539 WD repeat protein [Gen 99.9 1.2E-20 2.6E-25 191.9 25.8 329 16-382 123-608 (910)
118 KOG0321 WD40 repeat-containing 99.9 2.8E-21 6E-26 190.9 20.4 290 5-382 49-393 (720)
119 KOG2106 Uncharacterized conser 99.9 2.1E-19 4.6E-24 172.9 32.2 346 9-379 250-625 (626)
120 KOG0301 Phospholipase A2-activ 99.9 4.6E-21 1E-25 191.2 21.3 223 11-282 64-288 (745)
121 KOG0268 Sof1-like rRNA process 99.9 2.5E-22 5.3E-27 185.5 11.3 265 10-327 71-343 (433)
122 KOG0639 Transducin-like enhanc 99.9 1.3E-21 2.8E-26 187.6 16.5 230 10-281 470-703 (705)
123 KOG0302 Ribosome Assembly prot 99.9 8.2E-21 1.8E-25 176.4 21.2 203 16-233 164-381 (440)
124 KOG2106 Uncharacterized conser 99.9 2.9E-20 6.3E-25 178.8 24.6 315 4-377 155-518 (626)
125 KOG1063 RNA polymerase II elon 99.9 2.5E-20 5.5E-25 185.8 23.9 341 9-379 271-762 (764)
126 KOG0264 Nucleosome remodeling 99.9 7.6E-21 1.7E-25 181.3 18.9 245 86-380 137-404 (422)
127 KOG0267 Microtubule severing p 99.9 3E-22 6.5E-27 200.3 9.5 224 12-274 35-260 (825)
128 KOG0646 WD40 repeat protein [G 99.9 1.4E-20 3.1E-25 179.6 20.3 198 86-291 93-316 (476)
129 KOG0647 mRNA export protein (c 99.9 4.1E-20 8.8E-25 167.1 22.0 255 66-388 28-288 (347)
130 KOG1063 RNA polymerase II elon 99.9 1.9E-20 4E-25 186.8 21.6 334 8-382 148-650 (764)
131 KOG1408 WD40 repeat protein [F 99.9 8.3E-21 1.8E-25 189.3 17.9 242 5-283 461-714 (1080)
132 KOG0270 WD40 repeat-containing 99.9 4.4E-20 9.5E-25 175.3 20.7 252 16-289 191-456 (463)
133 KOG2048 WD40 repeat protein [G 99.9 2.1E-19 4.5E-24 179.2 26.4 240 4-283 70-320 (691)
134 KOG2919 Guanine nucleotide-bin 99.9 7E-20 1.5E-24 166.9 21.1 261 11-290 55-336 (406)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.2E-19 1.8E-23 175.0 30.3 240 10-291 35-288 (300)
136 KOG0267 Microtubule severing p 99.9 7.2E-22 1.6E-26 197.6 8.0 210 86-308 40-251 (825)
137 KOG2445 Nuclear pore complex c 99.9 1.9E-19 4E-24 163.2 22.7 240 10-282 18-318 (361)
138 KOG1273 WD40 repeat protein [G 99.8 1.1E-20 2.4E-25 171.5 13.8 256 120-390 26-292 (405)
139 KOG2048 WD40 repeat protein [G 99.8 1.2E-18 2.6E-23 173.8 29.1 241 2-284 24-277 (691)
140 KOG0300 WD40 repeat-containing 99.8 4.7E-20 1E-24 167.4 16.5 188 86-285 160-389 (481)
141 KOG0308 Conserved WD40 repeat- 99.8 5.9E-20 1.3E-24 182.0 17.9 234 12-282 80-327 (735)
142 KOG1332 Vesicle coat complex C 99.8 9.6E-20 2.1E-24 159.8 16.8 192 86-282 23-241 (299)
143 KOG2055 WD40 repeat protein [G 99.8 3E-19 6.6E-24 170.2 20.0 245 3-282 257-512 (514)
144 KOG4328 WD40 protein [Function 99.8 9.8E-19 2.1E-23 166.7 20.6 282 2-319 185-484 (498)
145 KOG4328 WD40 protein [Function 99.8 4.7E-19 1E-23 168.8 18.3 206 64-282 185-399 (498)
146 KOG1036 Mitotic spindle checkp 99.8 4.9E-18 1.1E-22 154.4 23.5 248 67-382 15-264 (323)
147 KOG4378 Nuclear protein COP1 [ 99.8 3.8E-18 8.3E-23 163.9 22.3 285 27-362 12-306 (673)
148 KOG1274 WD40 repeat protein [G 99.8 5.7E-18 1.2E-22 174.6 23.9 263 68-364 16-285 (933)
149 KOG0307 Vesicle coat complex C 99.8 2.2E-19 4.7E-24 189.5 13.3 247 65-329 64-327 (1049)
150 KOG2445 Nuclear pore complex c 99.8 3.2E-17 6.9E-22 148.9 24.2 268 62-379 11-317 (361)
151 KOG0270 WD40 repeat-containing 99.8 7.7E-18 1.7E-22 160.2 21.1 206 67-283 175-405 (463)
152 KOG1445 Tumor-specific antigen 99.8 2.7E-18 5.8E-23 169.4 17.3 121 4-148 80-201 (1012)
153 KOG1034 Transcriptional repres 99.8 6.1E-18 1.3E-22 154.8 17.5 296 4-379 39-382 (385)
154 KOG2096 WD40 repeat protein [G 99.8 1.3E-17 2.9E-22 151.8 17.9 189 9-228 191-400 (420)
155 KOG1009 Chromatin assembly com 99.8 5.9E-18 1.3E-22 159.2 16.0 258 113-379 61-371 (434)
156 KOG0321 WD40 repeat-containing 99.8 2.6E-17 5.7E-22 163.0 21.1 244 4-284 101-393 (720)
157 KOG1034 Transcriptional repres 99.8 1E-17 2.2E-22 153.3 16.8 238 9-281 93-382 (385)
158 KOG4227 WD40 repeat protein [G 99.8 5E-17 1.1E-21 151.8 21.0 311 3-379 56-386 (609)
159 KOG0307 Vesicle coat complex C 99.8 1.7E-18 3.6E-23 182.9 12.4 239 10-285 69-330 (1049)
160 KOG0303 Actin-binding protein 99.8 2.4E-17 5.3E-22 154.3 18.4 208 3-234 81-298 (472)
161 KOG4283 Transcription-coupled 99.8 8.8E-17 1.9E-21 145.0 20.5 292 4-325 44-361 (397)
162 KOG4378 Nuclear protein COP1 [ 99.8 5.1E-17 1.1E-21 156.2 19.5 187 86-285 91-283 (673)
163 KOG2110 Uncharacterized conser 99.8 1.8E-15 4E-20 141.1 28.6 234 9-285 9-251 (391)
164 KOG1188 WD40 repeat protein [G 99.8 5.8E-17 1.3E-21 149.3 18.5 278 86-380 40-346 (376)
165 KOG1007 WD repeat protein TSSC 99.8 1.4E-16 3.1E-21 143.3 20.4 259 86-379 76-360 (370)
166 KOG0302 Ribosome Assembly prot 99.7 5.7E-17 1.2E-21 151.1 16.5 206 115-380 149-378 (440)
167 KOG1538 Uncharacterized conser 99.7 6.4E-17 1.4E-21 160.7 17.5 260 96-380 33-293 (1081)
168 KOG0303 Actin-binding protein 99.7 2.9E-16 6.4E-21 147.2 20.7 207 60-285 77-297 (472)
169 KOG0290 Conserved WD40 repeat- 99.7 3.4E-16 7.5E-21 141.0 18.5 242 4-272 97-356 (364)
170 KOG1587 Cytoplasmic dynein int 99.7 9.5E-16 2.1E-20 158.2 23.2 250 3-283 242-517 (555)
171 KOG1188 WD40 repeat protein [G 99.7 3.1E-16 6.8E-21 144.6 16.8 189 18-233 41-245 (376)
172 KOG0650 WD40 repeat nucleolar 99.7 3.7E-16 8E-21 153.8 18.1 243 111-378 394-678 (733)
173 COG2319 FOG: WD40 repeat [Gene 99.7 3.7E-14 8.1E-19 148.3 33.8 322 4-381 66-401 (466)
174 COG2319 FOG: WD40 repeat [Gene 99.7 3.3E-14 7.2E-19 148.7 33.3 319 5-381 111-443 (466)
175 KOG0649 WD40 repeat protein [G 99.7 6.1E-15 1.3E-19 129.7 22.2 226 9-281 14-273 (325)
176 PRK11028 6-phosphogluconolacto 99.7 2E-14 4.3E-19 145.1 29.0 186 86-283 46-259 (330)
177 KOG0642 Cell-cycle nuclear pro 99.7 8.7E-17 1.9E-21 157.5 10.7 254 114-386 291-567 (577)
178 KOG0642 Cell-cycle nuclear pro 99.7 2.8E-16 6E-21 154.0 14.1 242 5-287 296-566 (577)
179 PF04003 Utp12: Dip2/Utp12 Fam 99.7 8.5E-17 1.8E-21 132.9 8.0 99 485-583 9-110 (110)
180 KOG0644 Uncharacterized conser 99.7 3.3E-16 7.1E-21 159.6 13.8 245 4-292 191-478 (1113)
181 KOG1240 Protein kinase contain 99.7 6.6E-15 1.4E-19 156.4 23.8 340 3-378 1048-1431(1431)
182 KOG1445 Tumor-specific antigen 99.7 8.3E-16 1.8E-20 152.1 15.5 241 13-282 587-844 (1012)
183 KOG1517 Guanine nucleotide bin 99.7 1.9E-14 4.1E-19 150.6 25.1 287 12-380 1071-1381(1387)
184 KOG1524 WD40 repeat-containing 99.7 2.9E-15 6.3E-20 145.7 17.9 176 85-277 74-250 (737)
185 KOG1007 WD repeat protein TSSC 99.7 9.4E-15 2E-19 131.7 18.9 201 9-231 127-362 (370)
186 KOG0771 Prolactin regulatory e 99.7 1.9E-15 4.1E-20 143.6 14.8 194 10-232 149-356 (398)
187 PRK11028 6-phosphogluconolacto 99.6 1.1E-13 2.5E-18 139.6 27.7 238 10-282 39-304 (330)
188 KOG2919 Guanine nucleotide-bin 99.6 1.1E-14 2.4E-19 133.4 17.7 226 14-272 120-360 (406)
189 KOG0322 G-protein beta subunit 99.6 8.7E-15 1.9E-19 130.4 16.4 229 86-379 25-322 (323)
190 KOG1963 WD40 repeat protein [G 99.6 1.9E-13 4.2E-18 141.3 28.0 167 115-290 203-383 (792)
191 KOG1963 WD40 repeat protein [G 99.6 1.7E-13 3.6E-18 141.8 27.2 296 9-381 209-539 (792)
192 KOG2110 Uncharacterized conser 99.6 1.2E-12 2.5E-17 122.6 29.7 190 9-232 50-250 (391)
193 KOG1272 WD40-repeat-containing 99.6 2.8E-15 6E-20 143.6 10.4 225 10-280 134-360 (545)
194 KOG1009 Chromatin assembly com 99.6 1.2E-13 2.6E-18 130.5 21.0 242 4-286 66-376 (434)
195 KOG1587 Cytoplasmic dynein int 99.6 1.3E-13 2.7E-18 142.6 23.2 244 65-380 242-516 (555)
196 KOG2111 Uncharacterized conser 99.6 7.9E-13 1.7E-17 121.3 25.3 234 9-284 9-258 (346)
197 KOG2139 WD40 repeat protein [G 99.6 3E-13 6.4E-18 125.9 22.1 194 5-230 100-309 (445)
198 KOG1334 WD40 repeat protein [G 99.6 5E-14 1.1E-18 135.9 16.2 284 4-325 143-462 (559)
199 KOG0649 WD40 repeat protein [G 99.6 6.3E-13 1.4E-17 117.2 21.5 241 3-280 62-314 (325)
200 KOG4497 Uncharacterized conser 99.6 1.9E-14 4E-19 132.1 12.3 223 11-288 14-246 (447)
201 KOG1517 Guanine nucleotide bin 99.6 2E-13 4.3E-18 143.1 21.4 254 4-284 1110-1383(1387)
202 KOG1523 Actin-related protein 99.6 1.6E-13 3.4E-18 125.9 17.9 200 3-233 10-239 (361)
203 KOG0771 Prolactin regulatory e 99.6 4.4E-14 9.6E-19 134.4 14.0 199 121-379 148-353 (398)
204 KOG0322 G-protein beta subunit 99.6 4.5E-14 9.8E-19 125.9 13.0 237 4-281 15-322 (323)
205 KOG0644 Uncharacterized conser 99.6 4.6E-15 1E-19 151.4 7.6 240 114-382 187-428 (1113)
206 PRK01742 tolB translocation pr 99.6 4.2E-13 9.2E-18 139.7 22.1 235 96-360 184-426 (429)
207 KOG1524 WD40 repeat-containing 99.5 2.6E-13 5.7E-18 132.2 17.8 205 18-278 76-282 (737)
208 KOG0290 Conserved WD40 repeat- 99.5 8.9E-13 1.9E-17 119.3 19.7 204 66-284 97-320 (364)
209 KOG2394 WD40 protein DMR-N9 [G 99.5 1.1E-13 2.4E-18 135.1 14.8 136 65-209 219-384 (636)
210 KOG1538 Uncharacterized conser 99.5 2.7E-13 5.8E-18 135.3 17.4 229 4-281 54-292 (1081)
211 KOG2394 WD40 protein DMR-N9 [G 99.5 1E-12 2.2E-17 128.4 20.4 164 86-256 185-383 (636)
212 PF02239 Cytochrom_D1: Cytochr 99.5 3.3E-12 7.2E-17 128.6 24.9 320 18-379 6-346 (369)
213 PRK01742 tolB translocation pr 99.5 6.6E-13 1.4E-17 138.3 20.2 189 4-230 204-401 (429)
214 KOG2139 WD40 repeat protein [G 99.5 2.4E-12 5.1E-17 120.0 20.2 195 65-282 98-309 (445)
215 PF08662 eIF2A: Eukaryotic tra 99.5 2.5E-12 5.5E-17 117.5 19.8 132 96-232 37-181 (194)
216 KOG3881 Uncharacterized conser 99.5 2.5E-12 5.4E-17 121.3 19.8 190 18-235 116-325 (412)
217 KOG2321 WD40 repeat protein [G 99.5 4.4E-12 9.4E-17 125.0 21.6 185 86-284 145-345 (703)
218 KOG1354 Serine/threonine prote 99.5 4.4E-12 9.6E-17 117.5 17.7 252 10-285 30-362 (433)
219 KOG2111 Uncharacterized conser 99.5 8.9E-11 1.9E-15 108.0 25.7 141 92-233 109-259 (346)
220 KOG4227 WD40 repeat protein [G 99.4 3.4E-12 7.3E-17 119.9 16.1 194 86-284 68-276 (609)
221 KOG3881 Uncharacterized conser 99.4 1.4E-11 3E-16 116.3 20.1 190 86-287 115-325 (412)
222 PRK03629 tolB translocation pr 99.4 2.7E-11 6E-16 125.9 24.7 235 97-359 180-427 (429)
223 KOG1310 WD40 repeat protein [G 99.4 1.6E-12 3.4E-17 127.3 13.9 206 3-235 50-308 (758)
224 KOG1523 Actin-related protein 99.4 9.4E-12 2E-16 114.4 17.4 206 65-285 10-239 (361)
225 PRK05137 tolB translocation pr 99.4 7.2E-11 1.6E-15 123.5 26.8 214 27-284 182-414 (435)
226 PRK04922 tolB translocation pr 99.4 7.5E-11 1.6E-15 123.2 26.7 213 27-283 184-412 (433)
227 PF02239 Cytochrom_D1: Cytochr 99.4 4E-11 8.6E-16 120.9 22.9 192 86-288 5-208 (369)
228 KOG1334 WD40 repeat protein [G 99.4 8.9E-13 1.9E-17 127.4 10.1 274 86-378 154-464 (559)
229 PRK03629 tolB translocation pr 99.4 6.1E-11 1.3E-15 123.3 24.7 191 9-233 202-409 (429)
230 PRK02889 tolB translocation pr 99.4 5.7E-11 1.2E-15 123.6 24.1 202 97-320 177-391 (427)
231 PF08662 eIF2A: Eukaryotic tra 99.4 3.2E-11 6.9E-16 110.3 19.6 154 121-290 9-186 (194)
232 PRK04922 tolB translocation pr 99.4 5.2E-11 1.1E-15 124.4 23.8 175 97-286 185-372 (433)
233 KOG1310 WD40 repeat protein [G 99.4 2.7E-12 5.9E-17 125.7 12.7 212 62-289 48-310 (758)
234 PF10282 Lactonase: Lactonase, 99.4 1.4E-09 3.1E-14 109.9 31.4 242 11-285 42-327 (345)
235 PRK05137 tolB translocation pr 99.4 1.4E-10 3E-15 121.4 24.3 195 4-233 202-415 (435)
236 KOG1240 Protein kinase contain 99.4 2.6E-11 5.7E-16 129.6 18.1 266 101-381 1034-1335(1431)
237 PRK02889 tolB translocation pr 99.3 2.6E-10 5.7E-15 118.7 23.9 173 86-274 207-392 (427)
238 KOG1272 WD40-repeat-containing 99.3 9.4E-13 2E-17 126.5 5.1 191 86-292 141-333 (545)
239 KOG4497 Uncharacterized conser 99.3 4.2E-10 9.2E-15 103.9 20.3 234 2-275 90-425 (447)
240 PF10282 Lactonase: Lactonase, 99.3 4.8E-09 1E-13 106.0 28.1 277 89-380 2-322 (345)
241 KOG2315 Predicted translation 99.2 1.2E-09 2.7E-14 108.1 21.4 132 140-288 252-395 (566)
242 TIGR02800 propeller_TolB tol-p 99.2 2.9E-09 6.2E-14 111.5 25.8 178 86-280 201-395 (417)
243 PRK01029 tolB translocation pr 99.2 4.1E-09 8.8E-14 109.2 26.4 184 90-286 203-407 (428)
244 COG2706 3-carboxymuconate cycl 99.2 1.9E-08 4.1E-13 95.1 27.7 240 10-281 44-320 (346)
245 KOG0974 WD-repeat protein WDR6 99.2 2.4E-10 5.2E-15 120.9 16.7 192 13-232 95-290 (967)
246 KOG0280 Uncharacterized conser 99.2 2.4E-10 5.3E-15 104.0 14.3 198 8-232 124-335 (339)
247 KOG2321 WD40 repeat protein [G 99.2 2.7E-10 5.8E-15 112.7 15.7 190 12-232 140-345 (703)
248 TIGR02800 propeller_TolB tol-p 99.2 2.3E-09 4.9E-14 112.3 23.9 174 97-285 171-357 (417)
249 PRK00178 tolB translocation pr 99.2 7.7E-09 1.7E-13 108.4 26.6 181 86-282 210-406 (430)
250 PRK04792 tolB translocation pr 99.2 4.2E-09 9.1E-14 110.1 24.2 191 9-232 221-427 (448)
251 PRK00178 tolB translocation pr 99.2 4.4E-09 9.6E-14 110.3 24.4 175 97-286 180-367 (430)
252 PRK04792 tolB translocation pr 99.2 1.3E-08 2.8E-13 106.4 26.8 180 86-281 229-424 (448)
253 COG2706 3-carboxymuconate cycl 99.2 2.6E-08 5.6E-13 94.2 25.7 274 89-380 5-321 (346)
254 KOG2314 Translation initiation 99.2 8E-09 1.7E-13 102.0 22.8 307 9-369 214-556 (698)
255 KOG1064 RAVE (regulator of V-A 99.2 1.9E-10 4.2E-15 127.2 12.3 183 11-234 2214-2402(2439)
256 KOG0309 Conserved WD40 repeat- 99.2 1.7E-10 3.7E-15 117.1 10.7 203 4-234 25-236 (1081)
257 COG5354 Uncharacterized protei 99.1 3.6E-08 7.8E-13 96.7 26.1 330 5-381 34-396 (561)
258 PRK01029 tolB translocation pr 99.1 1.2E-08 2.6E-13 105.7 23.9 196 9-233 188-406 (428)
259 COG5354 Uncharacterized protei 99.1 1.8E-08 4E-13 98.7 22.7 307 5-372 73-421 (561)
260 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.4E-07 5.2E-12 91.4 30.6 224 27-290 27-338 (352)
261 KOG0974 WD-repeat protein WDR6 99.1 2.3E-09 5E-14 113.6 17.1 185 86-283 99-289 (967)
262 KOG2315 Predicted translation 99.1 2.1E-08 4.5E-13 99.6 22.5 299 9-360 38-411 (566)
263 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.2E-07 2.5E-12 93.6 27.3 263 96-380 27-330 (352)
264 TIGR03300 assembly_YfgL outer 99.1 6.6E-08 1.4E-12 99.6 26.9 224 16-290 64-305 (377)
265 PLN02919 haloacid dehalogenase 99.1 1.7E-07 3.7E-12 107.1 31.2 249 11-286 573-892 (1057)
266 KOG0280 Uncharacterized conser 99.1 5.5E-08 1.2E-12 89.0 21.2 261 95-378 45-331 (339)
267 COG5170 CDC55 Serine/threonine 99.0 8E-09 1.7E-13 94.9 15.7 249 9-280 30-365 (460)
268 KOG1064 RAVE (regulator of V-A 99.0 1.9E-09 4.1E-14 119.6 13.0 180 86-291 2220-2407(2439)
269 KOG1354 Serine/threonine prote 99.0 1.4E-08 3E-13 94.7 15.8 248 86-381 37-360 (433)
270 TIGR03300 assembly_YfgL outer 99.0 8.3E-08 1.8E-12 98.8 23.7 228 16-291 104-347 (377)
271 PF04762 IKI3: IKI3 family; I 99.0 3.8E-07 8.3E-12 102.3 30.2 238 4-281 76-378 (928)
272 KOG4547 WD40 repeat-containing 99.0 8.6E-08 1.9E-12 96.0 20.8 189 86-283 5-221 (541)
273 PF08625 Utp13: Utp13 specific 99.0 4.6E-10 1E-14 94.8 3.9 92 492-584 49-141 (141)
274 KOG1409 Uncharacterized conser 98.9 7.3E-08 1.6E-12 90.0 17.9 232 14-284 33-272 (404)
275 KOG4190 Uncharacterized conser 98.9 3.8E-09 8.1E-14 104.0 8.5 173 113-293 731-917 (1034)
276 KOG2314 Translation initiation 98.9 7.3E-07 1.6E-11 88.6 24.2 272 11-321 255-559 (698)
277 KOG2041 WD40 repeat protein [G 98.9 1.7E-07 3.6E-12 95.5 20.0 264 5-295 14-309 (1189)
278 KOG1832 HIV-1 Vpr-binding prot 98.9 1E-09 2.2E-14 113.7 4.2 197 149-379 1091-1290(1516)
279 KOG4532 WD40-like repeat conta 98.9 4.7E-07 1E-11 81.9 19.9 195 86-286 84-286 (344)
280 PF13360 PQQ_2: PQQ-like domai 98.9 2.2E-06 4.7E-11 82.1 26.5 217 26-287 2-235 (238)
281 KOG3914 WD repeat protein WDR4 98.9 2.1E-08 4.6E-13 95.7 11.6 158 12-196 69-232 (390)
282 KOG1409 Uncharacterized conser 98.8 2.1E-07 4.7E-12 87.0 17.3 197 2-232 67-272 (404)
283 COG4946 Uncharacterized protei 98.8 4.4E-07 9.6E-12 88.3 19.8 173 13-218 327-507 (668)
284 PF15492 Nbas_N: Neuroblastoma 98.8 1.6E-06 3.4E-11 79.9 22.0 198 11-235 49-264 (282)
285 PRK04043 tolB translocation pr 98.8 1.2E-06 2.6E-11 90.3 23.2 191 9-233 191-403 (419)
286 KOG4190 Uncharacterized conser 98.8 4.6E-08 1E-12 96.5 11.0 191 86-291 747-957 (1034)
287 KOG1912 WD40 repeat protein [G 98.8 7.5E-07 1.6E-11 91.8 19.9 243 10-283 20-305 (1062)
288 PRK11138 outer membrane biogen 98.8 1.3E-06 2.7E-11 90.5 21.9 228 17-291 120-362 (394)
289 KOG4714 Nucleoporin [Nuclear s 98.8 1.4E-07 3.1E-12 84.8 12.4 144 86-231 101-255 (319)
290 PLN02919 haloacid dehalogenase 98.7 3.9E-06 8.4E-11 96.2 27.4 212 10-234 628-892 (1057)
291 COG4946 Uncharacterized protei 98.7 7.5E-06 1.6E-10 80.0 24.8 170 86-272 332-508 (668)
292 PRK04043 tolB translocation pr 98.7 8.5E-06 1.8E-10 84.1 27.1 176 89-282 203-400 (419)
293 PF08450 SGL: SMP-30/Gluconola 98.7 9.8E-06 2.1E-10 77.9 25.9 191 86-290 12-220 (246)
294 KOG3914 WD repeat protein WDR4 98.7 2.1E-07 4.5E-12 89.1 13.3 160 119-291 64-232 (390)
295 PF08450 SGL: SMP-30/Gluconola 98.7 2.3E-05 5.1E-10 75.3 27.4 217 11-271 5-244 (246)
296 KOG4532 WD40-like repeat conta 98.6 7.7E-06 1.7E-10 74.2 20.3 188 17-234 84-286 (344)
297 PRK11138 outer membrane biogen 98.6 1.1E-05 2.3E-10 83.6 24.1 235 16-288 68-318 (394)
298 PF07433 DUF1513: Protein of u 98.6 2.9E-05 6.3E-10 74.0 24.4 194 86-291 17-256 (305)
299 PF13360 PQQ_2: PQQ-like domai 98.6 1.9E-05 4.1E-10 75.6 23.9 188 14-234 33-234 (238)
300 PF07433 DUF1513: Protein of u 98.6 8.3E-05 1.8E-09 71.0 27.1 199 9-235 8-252 (305)
301 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00012 2.6E-09 66.5 26.1 143 17-189 23-167 (354)
302 KOG2041 WD40 repeat protein [G 98.6 1.9E-06 4.2E-11 88.0 16.2 280 66-364 15-323 (1189)
303 KOG2695 WD40 repeat protein [G 98.6 3.1E-07 6.7E-12 86.0 9.1 141 90-235 228-381 (425)
304 KOG2114 Vacuolar assembly/sort 98.5 2.8E-05 6E-10 81.8 24.0 193 12-233 30-246 (933)
305 PF15492 Nbas_N: Neuroblastoma 98.5 9.4E-05 2E-09 68.5 24.4 198 89-292 11-269 (282)
306 PF04762 IKI3: IKI3 family; I 98.5 3.1E-05 6.7E-10 87.3 25.7 198 66-284 76-335 (928)
307 KOG2695 WD40 repeat protein [G 98.5 7.6E-07 1.7E-11 83.4 9.3 154 133-295 228-389 (425)
308 PF09384 UTP15_C: UTP15 C term 98.5 2.9E-07 6.3E-12 79.3 6.0 90 489-579 59-148 (148)
309 KOG1275 PAB-dependent poly(A) 98.5 4.3E-06 9.3E-11 88.1 15.3 183 85-280 146-340 (1118)
310 COG5170 CDC55 Serine/threonine 98.5 5.3E-06 1.2E-10 76.7 14.2 192 86-284 38-311 (460)
311 KOG0309 Conserved WD40 repeat- 98.4 7.6E-07 1.6E-11 91.3 9.5 200 3-232 114-341 (1081)
312 PF00400 WD40: WD domain, G-be 98.4 9.8E-07 2.1E-11 57.2 6.5 39 189-228 1-39 (39)
313 KOG1832 HIV-1 Vpr-binding prot 98.4 2E-07 4.2E-12 97.2 4.3 193 66-294 1102-1303(1516)
314 KOG1275 PAB-dependent poly(A) 98.4 4.2E-06 9.1E-11 88.1 14.0 179 16-228 146-340 (1118)
315 KOG2066 Vacuolar assembly/sort 98.4 1.5E-05 3.2E-10 83.2 17.8 175 86-282 49-233 (846)
316 KOG4714 Nucleoporin [Nuclear s 98.4 9.4E-07 2E-11 79.7 7.2 148 128-283 100-255 (319)
317 PF04053 Coatomer_WDAD: Coatom 98.3 0.00014 3E-09 74.9 22.5 216 9-283 36-263 (443)
318 KOG1912 WD40 repeat protein [G 98.3 8.5E-05 1.8E-09 77.2 20.3 154 117-281 15-185 (1062)
319 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00064 1.4E-08 61.9 22.9 187 86-289 23-213 (354)
320 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00069 1.5E-08 68.8 26.7 304 14-369 1-347 (353)
321 PF00400 WD40: WD domain, G-be 98.3 2.8E-06 6E-11 55.0 5.9 33 113-145 7-39 (39)
322 KOG2066 Vacuolar assembly/sort 98.2 0.0001 2.3E-09 77.1 19.3 173 17-232 49-235 (846)
323 KOG1920 IkappaB kinase complex 98.2 0.00025 5.5E-09 77.7 22.7 194 9-233 72-325 (1265)
324 cd00216 PQQ_DH Dehydrogenases 98.2 0.0003 6.5E-09 74.7 23.3 235 18-292 111-434 (488)
325 KOG1645 RING-finger-containing 98.2 5.1E-05 1.1E-09 73.0 15.4 238 3-282 193-461 (463)
326 KOG0882 Cyclophilin-related pe 98.2 1.1E-05 2.4E-10 78.5 9.8 199 86-291 20-240 (558)
327 KOG0882 Cyclophilin-related pe 98.1 7.6E-05 1.6E-09 72.8 14.9 244 12-289 15-312 (558)
328 KOG3617 WD40 and TPR repeat-co 98.1 0.00014 3.1E-09 76.2 17.3 107 11-147 21-131 (1416)
329 PRK02888 nitrous-oxide reducta 98.1 0.0013 2.8E-08 69.0 23.2 247 20-283 69-405 (635)
330 PRK02888 nitrous-oxide reducta 98.0 0.00054 1.2E-08 71.7 19.9 102 125-231 284-405 (635)
331 KOG3621 WD40 repeat-containing 98.0 5.9E-05 1.3E-09 77.8 12.2 155 9-190 37-200 (726)
332 KOG1008 Uncharacterized conser 98.0 2E-06 4.2E-11 87.2 1.2 196 67-282 58-275 (783)
333 PF08553 VID27: VID27 cytoplas 98.0 0.00054 1.2E-08 74.4 19.1 148 17-186 493-646 (794)
334 COG3391 Uncharacterized conser 98.0 0.0096 2.1E-07 61.0 27.4 189 88-289 88-290 (381)
335 PF08553 VID27: VID27 cytoplas 97.9 0.00091 2E-08 72.7 20.3 141 86-229 493-646 (794)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.011 2.4E-07 63.2 27.4 151 18-192 121-338 (527)
337 COG3386 Gluconolactonase [Carb 97.9 0.0021 4.5E-08 63.0 20.0 196 86-293 37-253 (307)
338 PF02897 Peptidase_S9_N: Proly 97.9 0.028 6.1E-07 58.7 29.9 194 10-230 128-357 (414)
339 COG0823 TolB Periplasmic compo 97.9 0.00081 1.8E-08 69.1 17.7 134 96-233 218-361 (425)
340 KOG1645 RING-finger-containing 97.9 7E-05 1.5E-09 72.1 9.1 152 98-255 175-339 (463)
341 KOG1008 Uncharacterized conser 97.9 3.7E-06 8.1E-11 85.2 0.5 192 13-231 66-276 (783)
342 KOG1920 IkappaB kinase complex 97.8 0.005 1.1E-07 68.0 23.3 200 66-284 69-324 (1265)
343 PF00780 CNH: CNH domain; Int 97.8 0.015 3.2E-07 56.9 25.5 232 14-296 4-269 (275)
344 PF11768 DUF3312: Protein of u 97.8 0.00039 8.5E-09 70.9 14.1 80 3-113 259-338 (545)
345 PF11768 DUF3312: Protein of u 97.8 0.00014 3E-09 74.1 10.9 91 98-190 238-332 (545)
346 cd00216 PQQ_DH Dehydrogenases 97.8 0.0086 1.9E-07 63.7 24.8 195 17-235 61-324 (488)
347 COG0823 TolB Periplasmic compo 97.8 0.00072 1.6E-08 69.5 16.0 179 9-218 196-388 (425)
348 PF03178 CPSF_A: CPSF A subuni 97.8 0.01 2.2E-07 59.5 23.8 179 27-231 2-203 (321)
349 KOG2114 Vacuolar assembly/sort 97.8 0.0016 3.4E-08 69.1 18.0 186 86-284 35-245 (933)
350 PF06433 Me-amine-dh_H: Methyl 97.8 0.032 6.9E-07 54.4 25.4 194 11-235 100-325 (342)
351 PF14583 Pectate_lyase22: Olig 97.8 0.02 4.3E-07 56.8 24.4 191 86-286 48-276 (386)
352 PF08596 Lgl_C: Lethal giant l 97.7 0.013 2.7E-07 59.8 22.3 216 9-235 5-295 (395)
353 COG3391 Uncharacterized conser 97.7 0.018 3.9E-07 59.0 23.6 193 10-233 78-286 (381)
354 PF14583 Pectate_lyase22: Olig 97.6 0.019 4.1E-07 57.0 22.3 194 12-234 42-276 (386)
355 KOG3621 WD40 repeat-containing 97.6 0.00046 9.9E-09 71.5 11.1 115 116-231 32-155 (726)
356 KOG3617 WD40 and TPR repeat-co 97.6 0.00041 9E-09 72.9 10.1 107 121-230 19-131 (1416)
357 PF06977 SdiA-regulated: SdiA- 97.5 0.093 2E-06 49.7 24.0 186 11-227 27-247 (248)
358 PF03178 CPSF_A: CPSF A subuni 97.5 0.013 2.8E-07 58.7 19.5 175 97-282 3-202 (321)
359 KOG4499 Ca2+-binding protein R 97.5 0.01 2.2E-07 53.5 15.9 199 86-293 27-252 (310)
360 PF06433 Me-amine-dh_H: Methyl 97.4 0.034 7.4E-07 54.2 20.1 177 96-284 17-215 (342)
361 PF04053 Coatomer_WDAD: Coatom 97.4 0.014 3E-07 60.4 18.3 131 86-232 44-175 (443)
362 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.022 4.7E-07 45.6 14.7 102 6-142 2-109 (111)
363 KOG2079 Vacuolar assembly/sort 97.2 0.0041 8.8E-08 67.8 12.9 93 86-178 99-194 (1206)
364 PRK13616 lipoprotein LpqB; Pro 97.2 0.065 1.4E-06 57.8 22.2 127 97-230 380-527 (591)
365 PF08596 Lgl_C: Lethal giant l 97.2 0.042 9.2E-07 56.1 19.8 212 2-229 85-334 (395)
366 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.16 3.4E-06 51.8 23.5 73 161-235 309-403 (415)
367 PF05096 Glu_cyclase_2: Glutam 97.2 0.19 4.1E-06 47.4 22.2 175 12-218 51-249 (264)
368 KOG2395 Protein involved in va 97.2 0.022 4.7E-07 57.6 16.7 137 90-231 350-501 (644)
369 PF05694 SBP56: 56kDa selenium 97.2 0.24 5.2E-06 49.9 23.5 150 86-235 141-347 (461)
370 KOG4640 Anaphase-promoting com 97.2 0.0021 4.5E-08 66.0 9.6 93 66-169 21-115 (665)
371 KOG2395 Protein involved in va 97.1 0.0077 1.7E-07 60.7 12.9 148 16-186 344-499 (644)
372 COG3490 Uncharacterized protei 97.1 0.019 4.1E-07 53.5 14.4 125 87-217 81-243 (366)
373 PF00780 CNH: CNH domain; Int 97.1 0.3 6.5E-06 47.6 24.9 140 86-234 7-169 (275)
374 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.4 8.7E-06 48.7 26.7 163 98-272 160-347 (353)
375 KOG4640 Anaphase-promoting com 97.1 0.0024 5.2E-08 65.6 9.1 91 118-209 21-115 (665)
376 PF06977 SdiA-regulated: SdiA- 97.1 0.28 6E-06 46.5 23.1 156 68-233 24-203 (248)
377 COG3490 Uncharacterized protei 97.0 0.17 3.6E-06 47.5 19.5 181 86-280 125-346 (366)
378 COG3386 Gluconolactonase [Carb 97.0 0.31 6.8E-06 47.8 22.8 143 118-272 111-275 (307)
379 PF04841 Vps16_N: Vps16, N-ter 97.0 0.31 6.7E-06 50.5 23.8 34 199-233 216-249 (410)
380 PF02897 Peptidase_S9_N: Proly 96.9 0.68 1.5E-05 48.3 26.2 188 86-282 135-357 (414)
381 PF04192 Utp21: Utp21 specific 96.9 0.0047 1E-07 57.8 8.6 94 485-579 132-235 (237)
382 TIGR03074 PQQ_membr_DH membran 96.9 0.32 7E-06 54.1 24.0 197 86-290 194-485 (764)
383 smart00320 WD40 WD40 repeats. 96.8 0.0034 7.3E-08 39.3 5.3 39 189-228 2-40 (40)
384 KOG4441 Proteins containing BT 96.8 0.19 4.2E-06 54.2 21.3 182 86-283 333-547 (571)
385 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.44 9.6E-06 51.0 23.9 199 17-234 69-337 (527)
386 PF04841 Vps16_N: Vps16, N-ter 96.7 0.66 1.4E-05 48.0 23.7 83 125-211 186-271 (410)
387 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.13 2.9E-06 41.2 13.6 99 120-225 2-109 (111)
388 TIGR03074 PQQ_membr_DH membran 96.6 0.86 1.9E-05 50.8 24.4 206 17-235 194-482 (764)
389 PHA02713 hypothetical protein; 96.6 0.23 4.9E-06 53.8 19.7 182 86-284 304-535 (557)
390 smart00320 WD40 WD40 repeats. 96.5 0.0072 1.6E-07 37.7 5.2 31 115-145 10-40 (40)
391 PRK13616 lipoprotein LpqB; Pro 96.4 0.15 3.3E-06 55.1 17.3 101 118-226 350-472 (591)
392 PF05096 Glu_cyclase_2: Glutam 96.3 0.98 2.1E-05 42.7 20.2 162 117-288 44-209 (264)
393 PF05694 SBP56: 56kDa selenium 96.1 1.1 2.4E-05 45.3 19.9 193 86-284 87-344 (461)
394 PF12894 Apc4_WD40: Anaphase-p 95.9 0.021 4.5E-07 38.1 4.8 34 3-39 11-44 (47)
395 PF12234 Rav1p_C: RAVE protein 95.9 0.34 7.3E-06 51.9 16.0 98 89-186 43-155 (631)
396 KOG4499 Ca2+-binding protein R 95.7 0.28 6.2E-06 44.6 12.6 92 70-169 162-263 (310)
397 PHA03098 kelch-like protein; P 95.7 0.71 1.5E-05 50.0 18.6 142 86-233 295-467 (534)
398 PF14761 HPS3_N: Hermansky-Pud 95.6 0.88 1.9E-05 41.4 15.2 137 87-229 29-213 (215)
399 KOG1897 Damage-specific DNA bi 95.5 5.3 0.00011 44.4 25.7 130 140-281 471-612 (1096)
400 PHA02713 hypothetical protein; 95.4 0.56 1.2E-05 50.8 16.2 141 86-233 352-536 (557)
401 KOG2079 Vacuolar assembly/sort 95.3 0.071 1.5E-06 58.7 8.9 99 128-229 98-202 (1206)
402 COG5167 VID27 Protein involved 95.2 0.41 9E-06 48.5 13.0 153 12-187 474-632 (776)
403 KOG1897 Damage-specific DNA bi 95.2 2.3 4.9E-05 47.1 19.2 174 98-281 752-941 (1096)
404 COG3204 Uncharacterized protei 95.1 1.7 3.7E-05 41.3 16.1 156 68-232 88-265 (316)
405 KOG2444 WD40 repeat protein [G 95.0 0.059 1.3E-06 48.8 6.0 139 89-231 33-178 (238)
406 PHA03098 kelch-like protein; P 95.0 1.6 3.6E-05 47.2 18.6 143 86-233 343-514 (534)
407 KOG2444 WD40 repeat protein [G 95.0 0.093 2E-06 47.6 7.2 102 86-187 70-177 (238)
408 KOG1916 Nuclear protein, conta 94.9 0.029 6.3E-07 60.2 4.4 118 67-192 182-328 (1283)
409 PF12894 Apc4_WD40: Anaphase-p 94.8 0.096 2.1E-06 34.9 5.2 34 117-151 11-44 (47)
410 PHA02790 Kelch-like protein; P 94.7 3.2 6.9E-05 44.2 19.2 140 86-233 272-426 (480)
411 PF14870 PSII_BNR: Photosynthe 94.6 5 0.00011 39.3 19.9 153 115-279 142-301 (302)
412 COG3204 Uncharacterized protei 94.5 4.7 0.0001 38.5 17.9 116 115-231 83-211 (316)
413 KOG4441 Proteins containing BT 94.5 2.5 5.4E-05 45.8 17.9 175 86-274 285-486 (571)
414 TIGR03118 PEPCTERM_chp_1 conse 94.4 5 0.00011 38.6 20.0 213 6-233 23-282 (336)
415 KOG3630 Nuclear pore complex, 94.4 0.95 2.1E-05 50.6 14.2 128 89-218 116-262 (1405)
416 PF14870 PSII_BNR: Photosynthe 94.3 5.7 0.00012 38.9 20.4 137 86-227 156-301 (302)
417 PHA02790 Kelch-like protein; P 94.1 4.7 0.0001 42.9 19.0 140 86-232 319-472 (480)
418 PF15390 DUF4613: Domain of un 94.0 1.7 3.7E-05 45.3 14.2 117 116-233 55-189 (671)
419 PF10647 Gmad1: Lipoprotein Lp 93.9 6.3 0.00014 37.8 21.2 109 118-226 66-192 (253)
420 PRK10115 protease 2; Provision 93.7 14 0.00031 41.2 26.0 98 86-186 138-254 (686)
421 COG3823 Glutamine cyclotransfe 93.6 4.3 9.2E-05 36.6 14.2 171 16-218 55-247 (262)
422 PF10446 DUF2457: Protein of u 93.5 0.043 9.4E-07 54.4 2.0 13 529-542 14-26 (458)
423 PF07995 GSDH: Glucose / Sorbo 93.4 9.5 0.00021 38.3 26.4 28 10-39 6-33 (331)
424 PF10168 Nup88: Nuclear pore c 93.4 5.1 0.00011 44.5 17.9 35 115-149 144-181 (717)
425 PRK10115 protease 2; Provision 93.4 16 0.00034 40.8 31.3 188 11-230 132-344 (686)
426 PF12234 Rav1p_C: RAVE protein 93.4 1.5 3.2E-05 47.2 13.3 105 123-230 35-156 (631)
427 KOG3630 Nuclear pore complex, 93.3 0.48 1E-05 52.8 9.6 153 9-178 104-262 (1405)
428 PRK13684 Ycf48-like protein; P 93.2 10 0.00022 38.1 20.7 151 117-281 172-330 (334)
429 PF10168 Nup88: Nuclear pore c 93.0 2.6 5.6E-05 46.7 14.9 27 119-146 86-112 (717)
430 TIGR02604 Piru_Ver_Nterm putat 93.0 3.9 8.3E-05 41.8 15.5 19 118-136 124-142 (367)
431 PF10647 Gmad1: Lipoprotein Lp 92.9 9.1 0.0002 36.7 21.4 93 86-178 77-184 (253)
432 PF08728 CRT10: CRT10; InterP 92.8 4.8 0.0001 43.9 16.1 101 86-186 114-245 (717)
433 COG1520 FOG: WD40-like repeat 92.2 15 0.00033 37.5 20.2 202 86-292 68-278 (370)
434 PF14727 PHTB1_N: PTHB1 N-term 92.1 16 0.00035 37.7 28.3 183 86-284 145-362 (418)
435 TIGR02604 Piru_Ver_Nterm putat 92.1 6 0.00013 40.4 15.7 118 97-217 48-201 (367)
436 PF15390 DUF4613: Domain of un 91.7 20 0.00043 37.9 19.4 116 67-188 58-187 (671)
437 PF14761 HPS3_N: Hermansky-Pud 91.6 11 0.00023 34.6 16.5 101 130-233 29-166 (215)
438 PF14781 BBS2_N: Ciliary BBSom 91.5 7.3 0.00016 32.6 12.7 107 123-233 4-128 (136)
439 PF02333 Phytase: Phytase; In 91.4 18 0.00038 36.6 21.7 191 16-232 67-292 (381)
440 COG4257 Vgb Streptogramin lyas 91.4 13 0.00029 35.2 16.7 184 86-283 73-263 (353)
441 KOG2377 Uncharacterized conser 91.2 9.2 0.0002 38.8 14.7 143 89-231 36-186 (657)
442 PF07569 Hira: TUP1-like enhan 91.1 1.3 2.9E-05 41.2 8.8 28 125-152 18-45 (219)
443 PF04931 DNA_pol_phi: DNA poly 90.8 0.22 4.8E-06 56.2 3.9 12 575-586 624-635 (784)
444 PF07250 Glyoxal_oxid_N: Glyox 90.8 2.5 5.4E-05 39.8 10.2 141 141-290 48-205 (243)
445 COG5167 VID27 Protein involved 90.6 3.9 8.6E-05 41.8 11.8 134 92-231 486-633 (776)
446 KOG4460 Nuclear pore complex, 90.5 6 0.00013 40.8 12.9 94 119-233 105-201 (741)
447 PF03022 MRJP: Major royal jel 90.4 19 0.00041 35.2 19.7 134 97-232 35-217 (287)
448 KOG1916 Nuclear protein, conta 90.3 0.48 1.1E-05 51.4 5.5 161 96-287 153-328 (1283)
449 PF10313 DUF2415: Uncharacteri 90.2 1.4 3.1E-05 28.5 5.5 31 118-148 1-34 (43)
450 PF10214 Rrn6: RNA polymerase 90.1 16 0.00035 41.4 17.8 112 118-232 146-278 (765)
451 PF04931 DNA_pol_phi: DNA poly 89.8 0.29 6.3E-06 55.3 3.8 14 530-543 586-599 (784)
452 PF11715 Nup160: Nucleoporin N 89.5 5.7 0.00012 43.1 13.5 73 86-158 158-259 (547)
453 PF10313 DUF2415: Uncharacteri 89.3 1.3 2.7E-05 28.7 4.8 32 4-37 1-35 (43)
454 PF10395 Utp8: Utp8 family; I 89.3 19 0.00041 39.1 16.2 169 4-196 130-314 (670)
455 KOG2247 WD40 repeat-containing 89.2 0.077 1.7E-06 53.4 -1.2 141 9-178 38-178 (615)
456 KOG2280 Vacuolar assembly/sort 88.9 27 0.00059 38.0 16.8 146 86-235 94-251 (829)
457 PF14655 RAB3GAP2_N: Rab3 GTPa 88.8 2.7 5.8E-05 43.1 9.4 85 8-112 310-406 (415)
458 PF07676 PD40: WD40-like Beta 88.2 2.1 4.6E-05 27.0 5.5 32 196-227 5-38 (39)
459 PRK13684 Ycf48-like protein; P 87.7 33 0.00071 34.5 18.4 109 116-228 213-329 (334)
460 PF10395 Utp8: Utp8 family; I 87.4 48 0.001 36.1 23.4 163 117-291 129-314 (670)
461 PF07569 Hira: TUP1-like enhan 87.4 3.5 7.6E-05 38.4 8.6 61 86-147 22-95 (219)
462 KOG1898 Splicing factor 3b, su 87.2 41 0.00088 38.2 17.2 172 98-281 855-1047(1205)
463 KOG1983 Tomosyn and related SN 86.8 52 0.0011 38.4 19.1 27 9-35 39-65 (993)
464 TIGR03118 PEPCTERM_chp_1 conse 86.4 33 0.00072 33.2 19.1 194 86-290 34-287 (336)
465 KOG2280 Vacuolar assembly/sort 85.8 12 0.00027 40.4 12.3 181 96-291 64-255 (829)
466 PF08728 CRT10: CRT10; InterP 85.4 40 0.00086 37.2 16.1 108 120-229 103-245 (717)
467 KOG1900 Nuclear pore complex, 85.3 13 0.00029 42.9 12.9 145 24-188 96-273 (1311)
468 PF10214 Rrn6: RNA polymerase 85.2 74 0.0016 36.2 22.7 115 65-188 145-277 (765)
469 PLN02193 nitrile-specifier pro 84.9 57 0.0012 34.6 20.3 144 86-233 176-354 (470)
470 PLN00033 photosystem II stabil 84.9 50 0.0011 34.0 16.7 107 116-227 279-396 (398)
471 PF14727 PHTB1_N: PTHB1 N-term 83.9 57 0.0012 33.7 24.0 141 86-229 37-203 (418)
472 PF12768 Rax2: Cortical protei 83.9 26 0.00057 34.0 12.9 94 96-191 16-127 (281)
473 COG3823 Glutamine cyclotransfe 83.5 35 0.00076 31.0 13.8 102 128-233 55-161 (262)
474 KOG2377 Uncharacterized conser 83.5 56 0.0012 33.4 15.8 121 2-149 65-187 (657)
475 TIGR02276 beta_rpt_yvtn 40-res 83.0 6.6 0.00014 25.0 6.1 40 127-167 1-41 (42)
476 TIGR02276 beta_rpt_yvtn 40-res 82.9 5.3 0.00011 25.5 5.6 29 169-197 1-32 (42)
477 PLN00033 photosystem II stabil 82.5 63 0.0014 33.3 18.5 102 121-227 242-353 (398)
478 COG4590 ABC-type uncharacteriz 82.1 6.6 0.00014 39.7 8.0 145 86-234 232-390 (733)
479 KOG2247 WD40 repeat-containing 81.6 0.22 4.9E-06 50.2 -2.1 132 89-226 49-184 (615)
480 COG4590 ABC-type uncharacteriz 80.7 30 0.00065 35.2 12.0 163 4-192 221-391 (733)
481 KOG1896 mRNA cleavage and poly 80.7 1.2E+02 0.0026 35.3 18.8 141 86-232 1046-1215(1366)
482 PF07676 PD40: WD40-like Beta 80.4 3.9 8.5E-05 25.7 4.1 26 7-32 10-38 (39)
483 PF07995 GSDH: Glucose / Sorbo 79.9 44 0.00096 33.5 13.6 99 119-219 3-133 (331)
484 KOG1991 Nuclear transport rece 79.8 12 0.00026 41.9 9.7 43 493-535 754-796 (1010)
485 PF14781 BBS2_N: Ciliary BBSom 79.7 36 0.00077 28.6 12.9 124 11-152 4-130 (136)
486 KOG1824 TATA-binding protein-i 79.6 14 0.0003 41.2 10.0 45 500-544 204-250 (1233)
487 TIGR03548 mutarot_permut cycli 78.4 75 0.0016 31.6 19.5 103 128-233 72-197 (323)
488 PLN02153 epithiospecifier prot 78.3 79 0.0017 31.8 20.7 62 86-149 33-111 (341)
489 PHA02608 67 prohead core prote 76.5 1.7 3.7E-05 31.6 1.6 19 547-565 12-30 (80)
490 PF12657 TFIIIC_delta: Transcr 74.6 23 0.00049 31.6 8.8 32 200-231 86-122 (173)
491 KOG1900 Nuclear pore complex, 74.3 24 0.00053 40.9 10.4 100 170-276 90-201 (1311)
492 PF03022 MRJP: Major royal jel 73.8 93 0.002 30.4 17.0 137 140-283 35-216 (287)
493 PF12657 TFIIIC_delta: Transcr 73.4 24 0.00053 31.4 8.7 29 161-189 6-34 (173)
494 PF13449 Phytase-like: Esteras 73.3 1E+02 0.0023 30.8 17.5 144 118-268 20-230 (326)
495 PF08801 Nucleoporin_N: Nup133 72.9 80 0.0017 32.9 13.8 158 21-229 40-218 (422)
496 PF07250 Glyoxal_oxid_N: Glyox 72.1 91 0.002 29.5 14.1 147 30-203 49-213 (243)
497 PF03088 Str_synth: Strictosid 71.7 37 0.00079 26.4 8.0 63 121-184 1-85 (89)
498 COG4257 Vgb Streptogramin lyas 71.3 98 0.0021 29.6 19.5 235 7-283 65-306 (353)
499 COG4247 Phy 3-phytase (myo-ino 70.9 94 0.002 29.3 19.0 189 14-227 64-285 (364)
500 PF01731 Arylesterase: Arylest 70.6 25 0.00054 27.1 6.8 51 179-232 36-86 (86)
No 1
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-51 Score=408.77 Aligned_cols=492 Identities=18% Similarity=0.230 Sum_probs=360.8
Q ss_pred CCcccceeEeEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
+..+| .+++|+..|+++|.|+. =|.+-||++.+...+...++|...+.++.|+|+
T Consensus 306 s~~~I--~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD---------------------- 361 (893)
T KOG0291|consen 306 SDQKI--LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD---------------------- 361 (893)
T ss_pred cccee--eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC----------------------
Confidence 34678 56699999999999987 489999999999988888888777777777776
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
++++++|+.||.|+|||..++-|..++. .|++.|+++.|+..|+.+++++.||+|+.||+..+++.++|.....
T Consensus 362 -----gq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 362 -----GQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred -----CcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 8999999999999999999999998886 6999999999999999999999999999999999999999987654
Q ss_pred -CeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 -GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 -~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
...|++..|.|..+.+|+ =.|++|++++|+.+..+.||.+||.+++|+|.+..|++++ +|++|++|++-.....
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~- 513 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT- 513 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCce-
Confidence 778999999999998888 3899999999999999999999999999999999988877 8999999999776432
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
..++........ +.|. |+|..|++++.||.|.+||.+.+.++.....-+-... ++.....+.+
T Consensus 514 ---vEtl~i~sdvl~-vsfr-----PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~--------gR~~~D~~ta 576 (893)
T KOG0291|consen 514 ---VETLEIRSDVLA-VSFR-----PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSG--------GRKETDRITA 576 (893)
T ss_pred ---eeeEeeccceeE-EEEc-----CCCCeEEEEEecceEEEEEhhhceeeccccchhhccc--------cccccceeeh
Confidence 344555544444 3444 9999999999999999999988776644332211111 0000001100
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc--------------
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR-------------- 382 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~-------------- 382 (630)
. .+ ........+.+|+||.+| ++|+..+.+.++++..+
T Consensus 577 ~-----------------~s----------a~~K~Ftti~ySaDG~~I-lAgG~sn~iCiY~v~~~vllkkfqiS~N~sL 628 (893)
T KOG0291|consen 577 E-----------------NS----------AKGKTFTTICYSADGKCI-LAGGESNSICIYDVPEGVLLKKFQISDNRSL 628 (893)
T ss_pred h-----------------hc----------ccCCceEEEEEcCCCCEE-EecCCcccEEEEECchhheeeeEEeccccch
Confidence 0 00 111234556666666666 66665555555444322
Q ss_pred -----------------eeecccCCc-----cccccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhhcc-
Q 006808 383 -----------------VTALDRANA-----EDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKD- 439 (630)
Q Consensus 383 -----------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 439 (630)
...++..+. .+..+|+.+.+++..|+.++.. ..+.....+.|..+.....+-
T Consensus 629 dg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeI-----rv~sv~fsPtgraFAaatTEGl 703 (893)
T KOG0291|consen 629 DGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEI-----RVTSVQFSPTGRAFAAATTEGL 703 (893)
T ss_pred hHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceE-----EEEEEEECCCcCeeeeecccce
Confidence 111111111 1347888899988888766632 333333345554443332110
Q ss_pred -------ccc-cccccccccCHHHHHHhcCcccCCCcCCCCchhhhhhhccc---------cccccCChhHHHHHHhccC
Q 006808 440 -------DKV-EVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLS 502 (630)
Q Consensus 440 -------~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~q~l---------~~~~~~~~~~i~~tv~~l~ 502 (630)
.-. ..-.-...++-+.-.++|. ...+..+|.-+| ++++.+|...|+.++..||
T Consensus 704 ~IYsld~~~~FDPf~LD~~vTPe~v~~al~----------~qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp 773 (893)
T KOG0291|consen 704 LIYSLDTTILFDPFDLDVDVTPESVREALR----------EQEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLP 773 (893)
T ss_pred EEEecCCceEEcccccccccCHHHHHHHHh----------cchHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCc
Confidence 000 0000111222222223332 223444555445 3777889999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccccCCCCh-hHHHHHHHHHHHHHHHhhHhHHhccc-hHHHHH
Q 006808 503 PTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESL-TPMLSSLYKITVSREAAFQSLLRLSG-RLQLTM 580 (630)
Q Consensus 503 ~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l-~~~l~~L~~~~~~~~~~~~~l~~l~g-~l~~~~ 580 (630)
..|+.+||++|++ +..+..|.+++++|+++||.+||+++.....+ .+.|..||+.|.++.+.+.+|+.++- .|.+++
T Consensus 774 ~~y~erll~~l~~-~l~~s~HieF~l~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv 852 (893)
T KOG0291|consen 774 TAYLERLLKALSR-FLENSPHIEFYLRWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLV 852 (893)
T ss_pred HHHHHHHHHHHHH-HHhcCchHHHHHHHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999996 44577799999999999999999999887765 67899999999999999999998876 777888
Q ss_pred HHHHHH
Q 006808 581 AQIDRA 586 (630)
Q Consensus 581 ~~~~~~ 586 (630)
..++.+
T Consensus 853 ~~~~~~ 858 (893)
T KOG0291|consen 853 SKRQSR 858 (893)
T ss_pred hhhhhh
Confidence 777776
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-48 Score=384.34 Aligned_cols=516 Identities=16% Similarity=0.171 Sum_probs=386.9
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++|| +.++|+|.|.+||+|+.||.++|||+..+.+++.|++|.+.+..+.|.|...
T Consensus 104 He~Pv--i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~--------------------- 160 (775)
T KOG0319|consen 104 HEAPV--ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN--------------------- 160 (775)
T ss_pred cCCCe--EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc---------------------
Confidence 57899 8889999999999999999999999999999999999999888888877610
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-----
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----- 156 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~----- 156 (630)
..+|++|..|+.|++||+.+..........|.+.|++++|++++..++++|.|..+.+||+.+.+...++.
T Consensus 161 ----~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~ 236 (775)
T KOG0319|consen 161 ----RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESL 236 (775)
T ss_pred ----hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhe
Confidence 35689999999999999997665334456899999999999999999999999999999985432211111
Q ss_pred --------------------------------------------------------------------------------
Q 006808 157 -------------------------------------------------------------------------------- 156 (630)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (630)
T Consensus 237 E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~ 316 (775)
T KOG0319|consen 237 ESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIV 316 (775)
T ss_pred eeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEe
Confidence
Q ss_pred ----------------------------------------------cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC
Q 006808 157 ----------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (630)
Q Consensus 157 ----------------------------------------------~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~ 188 (630)
+|...|.++....+|-+|++|+ .++++|-+++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 4556677777556778889988 7999997754
Q ss_pred Cc----eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee----eecCCceeeeeEEecCCcc
Q 006808 189 HK----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL----AMEHPAVFMDCRCIDNGGV 260 (630)
Q Consensus 189 ~~----~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 260 (630)
+. ++....+|.+.|.+++++..+.-++++++.|+++++|++...+.......+ ....+...+.++.++
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia---- 472 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA---- 472 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec----
Confidence 43 455568999999999998776544444457999999999873322111222 223455567777777
Q ss_pred CCCCCEEEEEecCCcEEEEEcCCcccccc---cCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCc
Q 006808 261 DDAGLYVLAISETGVCYIWYGQNIEELRN---TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL 337 (630)
Q Consensus 261 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~ 337 (630)
|+...|+|||.|.+.+||+++.+..+.. |+...+.+. |++..+ .++++|.|.++++|. ..
T Consensus 473 -~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~----Fs~~dq----~laT~SgD~TvKIW~-----is--- 535 (775)
T KOG0319|consen 473 -PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS----FSKNDQ----LLATCSGDKTVKIWS-----IS--- 535 (775)
T ss_pred -CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE----eccccc----eeEeccCCceEEEEE-----ec---
Confidence 9999999999999999999997776554 444555555 788877 899999999887743 32
Q ss_pred cCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc--eeecccCCccccccCCCcccchhhhhhcccCCC
Q 006808 338 LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLPKILDSYDKKNRHQNLS 415 (630)
Q Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (630)
...++.++.||...|..+.|-.+|.+| +|++.||.+++|+++++ ...++. +..+.|.....+.....++
T Consensus 536 ~fSClkT~eGH~~aVlra~F~~~~~ql-iS~~adGliKlWnikt~eC~~tlD~--------H~DrvWaL~~~~~~~~~~t 606 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAVLRASFIRNGKQL-ISAGADGLIKLWNIKTNECEMTLDA--------HNDRVWALSVSPLLDMFVT 606 (775)
T ss_pred cceeeeeecCccceeEeeeeeeCCcEE-EeccCCCcEEEEeccchhhhhhhhh--------ccceeEEEeecCccceeEe
Confidence 456677888999999999999999999 99999999999999876 666666 3344554444444555566
Q ss_pred CCccccccccccchhhhhhhhhccccccccccccccCHHHHHHhcCcccCCCcCCCCchhhhhhhccc---c----cccc
Q 006808 416 SDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---D----FETN 488 (630)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~q~l---~----~~~~ 488 (630)
+++|. .+..|++.+..+..++.+-.....++-|.|.+.-.++....+.-|+..|..+. . +.+.
T Consensus 607 gg~Dg----------~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~ 676 (775)
T KOG0319|consen 607 GGGDG----------RIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRE 676 (775)
T ss_pred cCCCe----------EEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhc
Confidence 66665 33455555433311111111111112233332222223344444444444333 1 2333
Q ss_pred CChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhc-ccccCCCChhHHHHHHHHHHHHHHHhhH
Q 006808 489 IPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHG-HHLLSQESLTPMLSSLYKITVSREAAFQ 567 (630)
Q Consensus 489 ~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~-~~l~~~~~l~~~l~~L~~~~~~~~~~~~ 567 (630)
.+...+..+|.+|...+...||+++. .|++|+++....+..|..+|..|. ..|...|...+.+..|.+|+++|+.++.
T Consensus 677 r~~e~l~~av~~L~~dq~~~Ll~~~~-~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid 755 (775)
T KOG0319|consen 677 RDPEELGQAVFRLNEDQPEALLQFVV-KWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRID 755 (775)
T ss_pred CCcHHHHHHHHHhhhhhHHHHHHHHH-HhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHH
Confidence 45678999999999999999999999 899999999999999999999765 6788899999999999999999999999
Q ss_pred hHHhccchHHHHHHHHHH
Q 006808 568 SLLRLSGRLQLTMAQIDR 585 (630)
Q Consensus 568 ~l~~l~g~l~~~~~~~~~ 585 (630)
++.+-...|++++.+|+.
T Consensus 756 ~~~~~~~lLdf~~~eM~~ 773 (775)
T KOG0319|consen 756 RLVQDSALLDFTWFEMRI 773 (775)
T ss_pred HHhhhhHHHHHhhhheec
Confidence 999999999999998864
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-46 Score=344.40 Aligned_cols=322 Identities=18% Similarity=0.252 Sum_probs=271.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| +|++|+|+|..||+|+.|.++|+||+.+.....+.++|...+. |++|.|.
T Consensus 115 ~e~V--l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVl------------------cvawsPD------ 168 (480)
T KOG0271|consen 115 GEAV--LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVL------------------CVAWSPD------ 168 (480)
T ss_pred CCcE--EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEE------------------EEEECCC------
Confidence 3688 9999999999999999999999999999999999987766555 5555554
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-----~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+..|++|+.+|+|++||+.+|+.+.+.+.+|...|++++|.| .+++|++++.||.|+|||+..++++..+.+
T Consensus 169 ---gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 169 ---GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred ---cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence 788999999999999999999999899999999999999976 567899999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEe-----------eCCcE-----------
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----------DNGKY----------- 213 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-----------p~~~~----------- 213 (630)
|..+|+|++|--+| ++++++ ++|++|+...|.+.+.++||...|+.++.+ |.+++
T Consensus 246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 99999999998655 888888 899999999999999999999999999877 33333
Q ss_pred --------------EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 214 --------------VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 214 --------------l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
+++++ +|.++.+|+....++. +..+..+...+..+.|+ ||+++||+++.|..|++|
T Consensus 325 l~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kkp----i~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKKP----ITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKLW 394 (480)
T ss_pred HHHHHHhhccCcceeEEec-CCceEEEecccccccc----hhhhhchhhheeeEEEC-----CCccEEEEeecccceeee
Confidence 77776 7999999998776533 44444555566667777 999999999999999999
Q ss_pred EcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC
Q 006808 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (630)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (630)
+..+|+.+.++..+...+... ..+.+.+ .+++++.|.+++.|+.+ .......+.+|..+|.++.|+|
T Consensus 395 ~g~tGk~lasfRGHv~~VYqv-awsaDsR----LlVS~SkDsTLKvw~V~--------tkKl~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 395 DGRTGKFLASFRGHVAAVYQV-AWSADSR----LLVSGSKDSTLKVWDVR--------TKKLKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred eCCCcchhhhhhhccceeEEE-EeccCcc----EEEEcCCCceEEEEEee--------eeeecccCCCCCceEEEEEecC
Confidence 999999887776554333221 1566666 89999999877765533 3344456779999999999999
Q ss_pred Ccceeeccccceeccccce
Q 006808 360 DGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 360 dg~~l~~s~s~d~~~~~w~ 378 (630)
||..+ ++|+.|+.+|+|.
T Consensus 462 DG~rV-~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 462 DGQRV-ASGGKDKVLRLWR 479 (480)
T ss_pred CCcee-ecCCCceEEEeec
Confidence 99999 9999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-43 Score=331.15 Aligned_cols=282 Identities=18% Similarity=0.212 Sum_probs=250.1
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+.|| ..+.||+|++.|||||.+|.++||+..+...+++|.+|...+.. +.|.|...
T Consensus 174 d~rPi--s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~------------------~~fhP~~~--- 230 (459)
T KOG0272|consen 174 DTRPI--SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGA------------------AVFHPVDS--- 230 (459)
T ss_pred CCCcc--eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceee------------------EEEccCCC---
Confidence 35788 77799999999999999999999999999999999987765554 44544421
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+..+++|+.||++++|++.+...+..+ .+|...|..++|+|+|++|.|++.|.+-++||+.++..+....+|...
T Consensus 231 ----~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 231 ----DLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred ----ccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence 556999999999999999988877666 489999999999999999999999999999999999999889999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
|.+++|+|||.++++|+ ..-+|||+++|+++..+.+|..+|.+|.|+|+|-.+++++ .|++++|||++... .
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~-----~ 379 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRS-----E 379 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeecccc-----c
Confidence 99999999999999999 6779999999999999999999999999999999999988 59999999999876 4
Q ss_pred eeeecCCceeeeeEEecCCccCC-CCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
...++.+...++-+.|. | .|.+|++++.|++++||...++.+++
T Consensus 380 ly~ipAH~nlVS~Vk~~-----p~~g~fL~TasyD~t~kiWs~~~~~~~k------------------------------ 424 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYS-----PQEGYFLVTASYDNTVKIWSTRTWSPLK------------------------------ 424 (459)
T ss_pred ceecccccchhhheEec-----ccCCeEEEEcccCcceeeecCCCcccch------------------------------
Confidence 56677777788888887 6 68999999999999999876665432
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.+.||.+.|.++.++|||.++ +|+|.|+++|+|.
T Consensus 425 -------------------------sLaGHe~kV~s~Dis~d~~~i-~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 -------------------------SLAGHEGKVISLDISPDSQAI-ATSSFDRTIKLWR 458 (459)
T ss_pred -------------------------hhcCCccceEEEEeccCCceE-EEeccCceeeecc
Confidence 334899999999999999999 9999999999995
No 5
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.5e-41 Score=333.66 Aligned_cols=461 Identities=19% Similarity=0.241 Sum_probs=336.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.||.+ +||.+...+++|+. +.++||+..+.+++.++... .+.|..|.|-
T Consensus 374 ~dVRsl--~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--------------------y~l~~~Fvpg------- 423 (888)
T KOG0306|consen 374 SDVRSL--CVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--------------------YILASKFVPG------- 423 (888)
T ss_pred hheeEE--EeecCceeeeecCC-CcEEEEEccCcceeEEeccc--------------------cEEEEEecCC-------
Confidence 467666 99999988888875 68999999999999988621 2334445553
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-----Ccee------
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLL------ 152 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-----~~~~------ 152 (630)
..++++|..+|.+.+||+.+...+-++ .+|.+.|++++.+||+..+++||.|.+|++||+.- |...
T Consensus 424 --d~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 424 --DRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred --CceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 778999999999999999998887555 48999999999999999999999999999999641 2111
Q ss_pred --EEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 153 --GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 153 --~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
+++. -...|.|+.++|||++|+++- ++|++|-+.+-+...++.||.-||.++.+|||++.+++++ .|++|++|-
T Consensus 501 ~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiWG 578 (888)
T KOG0306|consen 501 HTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIWG 578 (888)
T ss_pred cceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCCceEEec
Confidence 1222 346899999999999999987 8999999999999999999999999999999999999988 699999999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccccc
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (630)
+.-+. |...+-.+...+.++-|. |....+.+++.||.++-||....+.+
T Consensus 579 LdFGD-----CHKS~fAHdDSvm~V~F~-----P~~~~FFt~gKD~kvKqWDg~kFe~i--------------------- 627 (888)
T KOG0306|consen 579 LDFGD-----CHKSFFAHDDSVMSVQFL-----PKTHLFFTCGKDGKVKQWDGEKFEEI--------------------- 627 (888)
T ss_pred cccch-----hhhhhhcccCceeEEEEc-----ccceeEEEecCcceEEeechhhhhhh---------------------
Confidence 99887 433443344444455555 88899999999999999998655442
Q ss_pred chhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccceeeccc
Q 006808 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDR 388 (630)
Q Consensus 309 ~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~ 388 (630)
+++.+|..+|+|++.+|+|.++ +|+|+|.++|+|+.....-.++.
T Consensus 628 ----------------------------------q~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE~tde~~~lEe 672 (888)
T KOG0306|consen 628 ----------------------------------QKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWERTDEILILEE 672 (888)
T ss_pred ----------------------------------eeeccchheeeeeEEcCCCCeE-EeccCCceeEeeeccCcceeeeh
Confidence 2444889999999999999999 99999999999998755444433
Q ss_pred CCccccccCCCcccchhhhhhccc-CCCCCccccccccccchhhhhhhhhccccccccccccccCHHHHHHhcCcccCC-
Q 006808 389 ANAEDAVLPLPKILDSYDKKNRHQ-NLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNK- 466 (630)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~- 466 (630)
... .++..... -++ +.++...+.+..|... ... -+..+.....+..++++.+....
T Consensus 673 ekE-------------~ErEe~yE~l~~-~~e~~~~~~~~~g~~~-----~~s---kkTieSvk~aE~i~ea~di~~~e~ 730 (888)
T KOG0306|consen 673 EKE-------------GEREEEYETLLA-SEEVVAGDGSADGDAG-----VAS---KKTIESVKSAERILEALDIGREEL 730 (888)
T ss_pred hhh-------------hhhHHHHHHhhh-hcccccCCCccccccc-----chh---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 100 00000000 000 0000000000000000 000 01112222233345555432110
Q ss_pred ---CcC-CCCchhhhhhhccc---------cccccCChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006808 467 ---DDL-LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYF 533 (630)
Q Consensus 467 ---~~~-~~~~~~~~~l~q~l---------~~~~~~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ 533 (630)
... |+ .+. .+|++++ +++..++...++.++.-||++|+..+|+++.. +.+++.+.+.+++.+.+
T Consensus 731 ~~~ee~~~g-~P~-npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~-~~q~~~~veLv~rv~~f 807 (888)
T KOG0306|consen 731 TQLEEYSPG-HPH-NPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDE-CIQRKSKVELVCRVLFF 807 (888)
T ss_pred HhHHhhcCC-CCC-cHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHH-HHcCCCcceeEeeeeee
Confidence 111 22 122 3444444 35566777899999999999999999998884 55577899999999999
Q ss_pred HHHHhcccccCCCChhHHHHHHHHHHHHHHHhhHhHHhccc-hHHHHHHHHHHHhhcc
Q 006808 534 ILVNHGHHLLSQESLTPMLSSLYKITVSREAAFQSLLRLSG-RLQLTMAQIDRAAQDK 590 (630)
Q Consensus 534 ll~~h~~~l~~~~~l~~~l~~L~~~~~~~~~~~~~l~~l~g-~l~~~~~~~~~~~~~~ 590 (630)
|+++|..++.+.+++++.|..++..+++-++.++..++.+- .|.++..+.+.+.+..
T Consensus 808 L~rih~~~it~~~~~kp~l~~i~s~l~~~v~q~rdv~G~NlagL~~l~~E~e~r~~v~ 865 (888)
T KOG0306|consen 808 LLRIHHKQITAHKNMKPLLEKIKSKLREIVEQLRDVLGFNLAGLSLLKQEWEDRENVK 865 (888)
T ss_pred hhhhhhhhhccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhchhcch
Confidence 99999999999999999999999999999998888877665 6777777777665533
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.9e-38 Score=279.79 Aligned_cols=280 Identities=16% Similarity=0.203 Sum_probs=243.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.| .++.|++|+++++++|.||.+.|||.-+....+.++-....+-.+.|+|.
T Consensus 56 ~Ki--~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS------------------------- 108 (343)
T KOG0286|consen 56 NKI--YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS------------------------- 108 (343)
T ss_pred cce--eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC-------------------------
Confidence 456 66699999999999999999999999998888888777767776777766
Q ss_pred cCCcEEEEEeCCCeEEEEEccCC--e---eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAG--Q---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~--~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
+++++.|+-|....||++.+. + .+.+.+.+|++.+.|+.|-+| .+|++++.|.++.+||+++++.+..|.+|
T Consensus 109 --g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 --GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred --CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCC
Confidence 889999999999999999855 2 344556799999999999885 47999999999999999999999999999
Q ss_pred CCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 159 ~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.+.|.+++++| +++.+++|+ +..++||++.+.++++|.+|...|+++.|.|+|.-|++++ +|++.++||++..+..
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQEL 264 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcEE
Confidence 99999999999 999999998 8999999999999999999999999999999999999887 7999999999998754
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (630)
.++........+..+.|+ ..|++|++|..|.++.+||.-.++.
T Consensus 265 ---a~ys~~~~~~gitSv~FS-----~SGRlLfagy~d~~c~vWDtlk~e~----------------------------- 307 (343)
T KOG0286|consen 265 ---AVYSHDSIICGITSVAFS-----KSGRLLFAGYDDFTCNVWDTLKGER----------------------------- 307 (343)
T ss_pred ---eeeccCcccCCceeEEEc-----ccccEEEeeecCCceeEeeccccce-----------------------------
Confidence 455544445566777787 8899999999999999999733221
Q ss_pred hccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+..+.+|.+.|.|+..+|||.-+ +|||+|..+|+|.
T Consensus 308 --------------------------vg~L~GHeNRvScl~~s~DG~av-~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 308 --------------------------VGVLAGHENRVSCLGVSPDGMAV-ATGSWDSTLRIWA 343 (343)
T ss_pred --------------------------EEEeeccCCeeEEEEECCCCcEE-EecchhHheeecC
Confidence 11344899999999999999999 9999999999994
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-39 Score=298.08 Aligned_cols=285 Identities=20% Similarity=0.252 Sum_probs=226.6
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcE
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v 141 (630)
||. ..+.|+.|.|. +..|++|++|.++++||+.+.....+. ++|...|.|++|+|||+.|++|+.||.|
T Consensus 113 GH~-e~Vl~~~fsp~---------g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 113 GHG-EAVLSVQFSPT---------GSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred CCC-CcEEEEEecCC---------CceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCCcchhhccccCCeE
Confidence 553 35556666663 778999999999999999999888666 5899999999999999999999999999
Q ss_pred EEEeCCCCceeE-EeecCCCCeEEEEEcc-----CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcE
Q 006808 142 CEIDPLTGSLLG-KFRASTKGISCMAVSS-----DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 142 ~iwd~~~~~~~~-~~~~~~~~v~~l~~~p-----~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 213 (630)
++||..+|+++. .+.+|...|++++|.| ..++|++++ |+|+|||+..++++..+.+|+.+|+|+.|--+| +
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-l 260 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-L 260 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-e
Confidence 999999987654 6999999999999976 567899988 899999999999999999999999999997554 5
Q ss_pred EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEec------CCccCCCC-----------------------
Q 006808 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID------NGGVDDAG----------------------- 264 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~----------------------- 264 (630)
+++++ .|++|++|+...+... ..+..+...++.+..+ .+.|.|.+
T Consensus 261 iySgS-~DrtIkvw~a~dG~~~-----r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 261 IYSGS-QDRTIKVWRALDGKLC-----RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred EEecC-CCceEEEEEccchhHH-----HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence 55555 8999999999887532 2222222222222222 01122333
Q ss_pred --CEEEEEecCCcEEEEEcCCcc----cccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCcc
Q 006808 265 --LYVLAISETGVCYIWYGQNIE----ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL 338 (630)
Q Consensus 265 --~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~ 338 (630)
..+++|+.|+++.+|+....+ .+..|+.....+. |+|+++ +|++|++|..+++|+++ .
T Consensus 335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fSPd~r----~IASaSFDkSVkLW~g~--------t 398 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FSPDGR----YIASASFDKSVKLWDGR--------T 398 (480)
T ss_pred CcceeEEecCCceEEEecccccccchhhhhchhhheeeEE----ECCCcc----EEEEeecccceeeeeCC--------C
Confidence 459999999999999965444 3344555555555 899999 99999999988887643 3
Q ss_pred CceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
...+.++.+|-..|+.++||.|.++| +|||.|.++++|++..
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLl-VS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLL-VSGSKDSTLKVWDVRT 440 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEE-EEcCCCceEEEEEeee
Confidence 34445677999999999999999999 9999999999999954
No 8
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=282.43 Aligned_cols=445 Identities=15% Similarity=0.179 Sum_probs=307.9
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++|. +++|||... -+|+.+. -++.||+..+.....++..-...+.+..|..+
T Consensus 26 ~~~vs--sl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D----------------------- 79 (487)
T KOG0310|consen 26 HNSVS--SLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD----------------------- 79 (487)
T ss_pred cCcce--eEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecC-----------------------
Confidence 35774 449999654 3444443 58999999887777666544444443333333
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
|.++++|...|.|+|||+.+...+ +.+.+|+.+|..+.|+|+++ .|++|+.|+.+++||+.+......+.+|..
T Consensus 80 ----G~LlaaGD~sG~V~vfD~k~r~iL-R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD 154 (487)
T KOG0310|consen 80 ----GRLLAAGDESGHVKVFDMKSRVIL-RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD 154 (487)
T ss_pred ----CeEEEccCCcCcEEEeccccHHHH-HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc
Confidence 889999999999999996664444 55568999999999999555 578889999999999998887668999999
Q ss_pred CeEEEEEccC-CCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 GISCMAVSSD-GKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.|.|.+|+|. +.++++|+ |.|++||++.. ..+.++. |..+|..+.|-|.|..++++| ...+++||+.++...
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~ql- 230 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQL- 230 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCcee-
Confidence 9999999995 45778887 99999999987 5666666 899999999999999998876 568999999977644
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
+.....+...++|+.+. .++..|++++-||.+++||+.+.+.+...+
T Consensus 231 ---l~~~~~H~KtVTcL~l~-----s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------------------- 277 (487)
T KOG0310|consen 231 ---LTSMFNHNKTVTCLRLA-----SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------------------- 277 (487)
T ss_pred ---hhhhhcccceEEEEEee-----cCCceEeecccccceEEEEccceEEEEeee-------------------------
Confidence 22233244455677776 688999999999999999976554432211
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccceeecccCCcccccc
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVL 396 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~ 396 (630)
-.++|.+++.+||++.+ +.|..+|.+.+..... . ..+.
T Consensus 278 -------------------------------~~~pvLsiavs~dd~t~-viGmsnGlv~~rr~~~--k--------~k~s 315 (487)
T KOG0310|consen 278 -------------------------------YPGPVLSIAVSPDDQTV-VIGMSNGLVSIRRREV--K--------KKPS 315 (487)
T ss_pred -------------------------------cccceeeEEecCCCceE-EEecccceeeeehhhc--c--------cCCC
Confidence 12378999999999998 8888788876643211 0 0111
Q ss_pred CCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhhccccccccccccccCHHHHHHhcCcccCCCcCCCCchhh
Q 006808 397 PLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALE 476 (630)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 476 (630)
+.|++... |. ....+...+.+++.+.++. +. + + ....-....+.+|. .+...+.|.
T Consensus 316 ~~~~~r~~--r~-~~~~v~~r~~~~~~~~ddi------v~-n-~----~~r~~L~~~Dk~Lk---------~F~~kkALd 371 (487)
T KOG0310|consen 316 KEPKRRAD--RS-DGFFVKVRGQNYKGQKDDI------VV-N-E----VKRLKLTYFDKRLK---------QFKHKKALD 371 (487)
T ss_pred cccccccc--cc-ccceEeeecccccccccee------Ee-c-c----ccccCCchHHHHHh---------hhhHHHHHH
Confidence 11111000 00 0000000000001000000 00 0 0 00000011111222 122223332
Q ss_pred hhhh-ccc-----cccccC-ChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccccCCCChh
Q 006808 477 ATLF-NGI-----DFETNI-PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLT 549 (630)
Q Consensus 477 ~~l~-q~l-----~~~~~~-~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l~ 549 (630)
.+|. +.- .+++.+ .+..+..++..+....+.+||.||...+ +.++....++.|+..+|.+++..+...|.+.
T Consensus 372 ~vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~~l-~~~rf~~~L~~~~~~iLd~Y~~~i~~s~~l~ 450 (487)
T KOG0310|consen 372 HVLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVKNL-TVVRFASILMEVVSVILDLYARDIEGSPMLA 450 (487)
T ss_pred HHhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHhhhccCHHHH
Confidence 2222 111 123333 4568999999999999999999999555 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhccchHHHHHHH
Q 006808 550 PMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQ 582 (630)
Q Consensus 550 ~~l~~L~~~~~~~~~~~~~l~~l~g~l~~~~~~ 582 (630)
+.+..|+..+++.+....+++++.|+|+|+...
T Consensus 451 k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL~~~ 483 (487)
T KOG0310|consen 451 KLIQALRGKVEQEVRVQKELLRLIGMLDMLGSI 483 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 999999999999999999999999999999853
No 9
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=283.01 Aligned_cols=493 Identities=31% Similarity=0.405 Sum_probs=340.9
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc-----------cccc
Q 006808 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR-----------KKKR 82 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~-----------~~~~ 82 (630)
.|-+.|||....||.++||++.+++...+|.+. .+.+..+++..|.-.-. ..++
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~---------------~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPI---------------ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccc---------------hhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 456689999999999999999999998887632 45555667777752211 1111
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
..+...++.|+..|.|.+|++..|+....+. ..|.++|.++.++.+-..|++++.|+.+..|+....+.++.++.....
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 2357789999999999999999999987776 679999999999998889999999999999999999999999998899
Q ss_pred eEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeC-----CcEEEEEeeCCCeEEEEEcCC-Cccc
Q 006808 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-----GKYVLSSAVGERYIALWRTDG-VKKQ 235 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~l~~~~~~d~~i~vwd~~~-~~~~ 235 (630)
+.+++++|||.++++++++|++||+++++.+.+|+||.++|+++.|..+ |.+++++...++.|.+|-+.. .+..
T Consensus 147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk 226 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK 226 (541)
T ss_pred cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence 9999999999999999999999999999999999999999999999887 888888776788899998876 3444
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (630)
...|.+..++.+......... +..+.+.++.+..+-+..|...+...+...+..+....-.+ .++ -++
T Consensus 227 s~~~sl~~~dipv~~ds~~~e----d~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~-~s~-------g~~ 294 (541)
T KOG4547|consen 227 SLSCSLTVPDIPVTSDSGLLE----DGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNAD-SSK-------GFL 294 (541)
T ss_pred hhheeeccCCCCeEecccccc----ccccceEEeeeccCceeeeccccHHHHhcCccccccceeee-ccc-------chh
Confidence 456777777777666554432 11223555555555555666666666665555543332111 111 255
Q ss_pred hccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCc-ceeeccccceeccccceeccceeecccCCcccc
Q 006808 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG-VLLPMSQSLLKSKRGRYVQNRVTALDRANAEDA 394 (630)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 394 (630)
++.++- . ...++++||...++.|+.+....+.-..+.-..++ ... ++...-....-..+.|.++.+.. +
T Consensus 295 a~~~~~-~---~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~-~~~~~~k~~~rqv~~n~~~k~~~----~- 364 (541)
T KOG4547|consen 295 AALFGI-D---KAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGK-LKLVTSKEGKRQVVLNSVAKLGE----A- 364 (541)
T ss_pred hhhccc-c---hhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcc-cceeeeecccceeecchhhhhcc----h-
Confidence 555532 1 14567889999888888776654443322222111 110 11000000000000111111100 0
Q ss_pred ccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhhccccccccccccccCHHHHHHhcCcccCCCc---CCC
Q 006808 395 VLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDD---LLS 471 (630)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~ 471 (630)
.+. + +..+ +...+.. .......|+.++.|+.++.+...... ...
T Consensus 365 -~~~-------q-~~~p-------------------~~~~l~v-----~~~~g~iEv~~earl~~l~i~~~~~~~k~~~~ 411 (541)
T KOG4547|consen 365 -EVI-------Q-EEPP-------------------LTEDLPV-----LTKGGDIEVSTEARLSALDINLTSNADKSDES 411 (541)
T ss_pred -hhh-------c-ccCc-------------------chhcchh-----hhcCCcceeeehhhhhhcccccccccchhhhh
Confidence 000 0 0000 0011111 11345667888999999887654421 122
Q ss_pred Cchhhhhhhccc---------cccccCChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccc
Q 006808 472 NSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHL 542 (630)
Q Consensus 472 ~~~~~~~l~q~l---------~~~~~~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l 542 (630)
....+..+.|+| .++...+++.|+.++.+++++++.+||+.+..+|++++.+++.++.|++++|..|++||
T Consensus 412 tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h~~yl 491 (541)
T KOG4547|consen 412 TLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSHNSYL 491 (541)
T ss_pred ccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhccccee
Confidence 334566778888 38888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhHhHHhccchH
Q 006808 543 LSQESLTPMLSSLYKITVSREAAFQSLLRLSGRL 576 (630)
Q Consensus 543 ~~~~~l~~~l~~L~~~~~~~~~~~~~l~~l~g~l 576 (630)
++.|+....|..+.+...++.+.+..++...++|
T Consensus 492 ~sv~~~~~~l~~~~~~~~~~ae~~~~~la~~~~l 525 (541)
T KOG4547|consen 492 SSVPDQLETLSGKMQKDLRTAEQLGHLLAMELQL 525 (541)
T ss_pred ecCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999855555555555555555555554444433
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-33 Score=276.79 Aligned_cols=324 Identities=16% Similarity=0.181 Sum_probs=263.1
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcE--EEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.| +++.|+.|.++|++||.|-+++||.+...+- ...+.+|...+..+.|..+
T Consensus 147 di--~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~------------------------ 200 (893)
T KOG0291|consen 147 DI--TSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN------------------------ 200 (893)
T ss_pred ce--eEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC------------------------
Confidence 56 6679999999999999999999999876554 5556666655555554443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccC-----------------------Cee-----e-----EEccCCCCCCEEEEEEecCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSA-----------------------GQL-----K-----WRLSDCHPGGVSAISFATHG 129 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~-----------------------~~~-----~-----~~~~~~h~~~v~~~~~s~~g 129 (630)
..-+++.+.||.+.+|.+.. ++. . ..++......|++.+|++.-
T Consensus 201 ---~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t 277 (893)
T KOG0291|consen 201 ---SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT 277 (893)
T ss_pred ---cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc
Confidence 55589999999999998761 111 1 12223344789999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEE
Q 006808 130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMT 206 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~ 206 (630)
+.|++|-..|...+|.+....+++.+.....+|..++|+..|.+||.|+ |.+.||+..+..-+....+|...+++++
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 9999999999999999999999999998888999999999999999998 7999999999988888999999999999
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
++|||+++++++ .||.|+|||..++- |..++..+...++.+.|. ..|+.+++.+.||+|+.||+..++.
T Consensus 358 YSpDgq~iaTG~-eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~-----~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 358 YSPDGQLIATGA-EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFT-----ARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ECCCCcEEEecc-CCCcEEEEeccCce-----EEEEeccCCCceEEEEEE-----ecCCEEEEeecCCeEEeeeecccce
Confidence 999999999998 69999999999876 677777777777777777 8899999999999999999999988
Q ss_pred ccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeec
Q 006808 287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM 366 (630)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~ 366 (630)
.+++..+.....+....-|.+. .+.+|+.|. ++..+|. ......++.+.||.++|.+++|+|+|..| +
T Consensus 427 fRTft~P~p~QfscvavD~sGe----lV~AG~~d~----F~IfvWS---~qTGqllDiLsGHEgPVs~l~f~~~~~~L-a 494 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGE----LVCAGAQDS----FEIFVWS---VQTGQLLDILSGHEGPVSGLSFSPDGSLL-A 494 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCC----EEEeeccce----EEEEEEE---eecCeeeehhcCCCCcceeeEEccccCeE-E
Confidence 8877655433222222344454 667777653 3333333 44567778899999999999999999999 9
Q ss_pred cccceeccccceec
Q 006808 367 SQSLLKSKRGRYVQ 380 (630)
Q Consensus 367 s~s~d~~~~~w~~~ 380 (630)
|+|+|+++|+|++-
T Consensus 495 S~SWDkTVRiW~if 508 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIF 508 (893)
T ss_pred eccccceEEEEEee
Confidence 99999999999984
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=251.28 Aligned_cols=274 Identities=15% Similarity=0.216 Sum_probs=219.7
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (630)
-+||++|.|.+||+|...+|.|..+++-..+.++.+...|+ ...|+ +.....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd---------------------------k~~LA-aa~~qh 62 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD---------------------------KKDLA-AAGNQH 62 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC---------------------------cchhh-hccCCe
Confidence 48999999999999999999999999876666666665555 34444 445567
Q ss_pred EEEEEccCCee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEE
Q 006808 98 VLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (630)
Q Consensus 98 v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 176 (630)
|++||+.++.. ....+.+|+..|+++.|..+|+++++||.||+++|||++...+.+.|+ +..+|+++..+|+...|++
T Consensus 63 vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis 141 (311)
T KOG0315|consen 63 VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELIS 141 (311)
T ss_pred eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEe
Confidence 99999998876 334456899999999999999999999999999999999988777777 6699999999999999999
Q ss_pred eC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc-ceeeeeec-CCceeee
Q 006808 177 AA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-ASCVLAME-HPAVFMD 251 (630)
Q Consensus 177 ~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~~ 251 (630)
|. |.|++||+....+...+ +....+|.++...|+|.+++++. ..|+.++|++....... ...+..+. |......
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEE
Confidence 98 99999999988665554 34456899999999999998887 58999999997754221 11222333 4555555
Q ss_pred eEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEE
Q 006808 252 CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTF 331 (630)
Q Consensus 252 ~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 331 (630)
|. ++ ||+++|++++.|.+++||+.++. ++..
T Consensus 221 C~-lS-----Pd~k~lat~ssdktv~iwn~~~~--~kle----------------------------------------- 251 (311)
T KOG0315|consen 221 CL-LS-----PDVKYLATCSSDKTVKIWNTDDF--FKLE----------------------------------------- 251 (311)
T ss_pred EE-EC-----CCCcEEEeecCCceEEEEecCCc--eeeE-----------------------------------------
Confidence 54 44 99999999999999999998654 1100
Q ss_pred EEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 332 VAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 332 ~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
..+.+|...++.++||.||+|| +|+|.|...|+|++..+
T Consensus 252 -----------~~l~gh~rWvWdc~FS~dg~Yl-vTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 252 -----------LVLTGHQRWVWDCAFSADGEYL-VTASSDHTARLWDLSAG 290 (311)
T ss_pred -----------EEeecCCceEEeeeeccCccEE-EecCCCCceeecccccC
Confidence 0334777789999999999999 99999999999998653
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-33 Score=250.10 Aligned_cols=287 Identities=18% Similarity=0.247 Sum_probs=233.0
Q ss_pred CcccceeEeEECCC-CCEEEEeeCCCcEEEEECC-----CCcEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTL-----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
++-|+.+ +..+. .+.+.+++.|.++.+|++. .|..++.+++|...+..+..+++
T Consensus 15 ~d~Vt~l--a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d------------------ 74 (315)
T KOG0279|consen 15 TDWVTAL--AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD------------------ 74 (315)
T ss_pred CceEEEE--EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC------------------
Confidence 3456444 66665 4688999999999999874 46678889988888877777776
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+++.++++.|+.+++||+.+++...++ .+|...|.+++|++|++.+++|+.|.+|++|++. +.+..++.
T Consensus 75 ---------g~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~ 143 (315)
T KOG0279|consen 75 ---------GNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH 143 (315)
T ss_pred ---------CceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence 889999999999999999999877666 5899999999999999999999999999999976 55656655
Q ss_pred cC--CCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 157 AS--TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 157 ~~--~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
.+ .+.|.|++|+|+ ..+|++++ ++|++||+++.+....+.+|++.++.+++||||...++++ .||.+.+||++
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~ 222 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLN 222 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCceEEEEEcc
Confidence 44 579999999997 67888888 8999999999999999999999999999999999999888 79999999999
Q ss_pred CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccch
Q 006808 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (630)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (630)
.++ +.+.+++.. .+..++|+ |+.-+|+++.. -.|+|||+.++..+...++...... .+
T Consensus 223 ~~k-----~lysl~a~~-~v~sl~fs-----pnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s--------~~-- 280 (315)
T KOG0279|consen 223 EGK-----NLYSLEAFD-IVNSLCFS-----PNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPS--------SK-- 280 (315)
T ss_pred CCc-----eeEeccCCC-eEeeEEec-----CCceeEeeccC-CceEEEeccchhhhhhccccccccc--------cc--
Confidence 987 456666554 55667776 87666666655 4599999999887766543321110 00
Q ss_pred hhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 311 ~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
...-.-++++||+||..| ++|-.|+.+++|.+.
T Consensus 281 ------------------------------------~~~~~clslaws~dG~tL-f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 281 ------------------------------------AGDPICLSLAWSADGQTL-FAGYTDNVIRVWQVA 313 (315)
T ss_pred ------------------------------------cCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEee
Confidence 001134689999999999 999999999999873
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-34 Score=264.38 Aligned_cols=279 Identities=15% Similarity=0.251 Sum_probs=242.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+|+.+ -|+|+-..+++++.|++|++||+.+|++...+++|..++..+.|...
T Consensus 109 ~~vt~v--~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~------------------------- 161 (406)
T KOG0295|consen 109 SSVTRV--IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS------------------------- 161 (406)
T ss_pred cceeee--eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC-------------------------
Confidence 467444 89999999999999999999999999999999988777666655544
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.++++++.|=.+++||..+.....+...+|...|.+++|-|.|.++++++.|.+|++|++.++-++.+|.+|...|.
T Consensus 162 --Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 162 --GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred --ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 788999999999999999874332344468999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeC---------------CcEEEEEeeCCCeEEE
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------GKYVLSSAVGERYIAL 226 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~---------------~~~l~~~~~~d~~i~v 226 (630)
.++.+.||.++++++ .++++|-+.++++...+..|..+|.+++|.|. ++++.+++ .|++|++
T Consensus 240 ~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktIk~ 318 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTIKI 318 (406)
T ss_pred EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceEEE
Confidence 999999999999999 79999999999998999999999999999763 23565555 8999999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccc
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKS 306 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (630)
||+.++. |++++..+...++.+.|+ |.|+||+++..|+++++||+++++.+....
T Consensus 319 wdv~tg~-----cL~tL~ghdnwVr~~af~-----p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------- 373 (406)
T KOG0295|consen 319 WDVSTGM-----CLFTLVGHDNWVRGVAFS-----PGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------- 373 (406)
T ss_pred EeccCCe-----EEEEEecccceeeeeEEc-----CCCeEEEEEecCCcEEEEEeccceeeeccC---------------
Confidence 9999986 788888888888888887 999999999999999999998887654332
Q ss_pred ccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 307 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.|...|.++.|+.+..++ +|||.|.+.++|+
T Consensus 374 ----------------------------------------ah~hfvt~lDfh~~~p~V-vTGsVdqt~KvwE 404 (406)
T KOG0295|consen 374 ----------------------------------------AHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE 404 (406)
T ss_pred ----------------------------------------CCcceeEEEecCCCCceE-Eeccccceeeeee
Confidence 455577888888888888 9999999999986
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-32 Score=263.74 Aligned_cols=359 Identities=18% Similarity=0.189 Sum_probs=255.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccc----c-ccccceeeEEeccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER----E-HLSVDYTCMKWLSV 76 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~----~-~~~~~~~~~~w~~~ 76 (630)
.++ ....|||.|.|+|+|...|+|||||+.... +..+|+...+++..+.|..+-.+ | -...-...+.|..-
T Consensus 60 ~~v--tVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 60 HQV--TVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred cee--EEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 355 445899999999999999999999987533 45677888888888888765111 0 00112333444432
Q ss_pred cccc------cc-------ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 006808 77 DRKK------KR-------KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE 143 (630)
Q Consensus 77 ~~~~------~~-------~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~i 143 (630)
..-. ++ ....-.+++|+.|+.|.+|.=.--+...++ ..|..-|.|+.|+|||.+|++++.||++.+
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEEE
Confidence 2100 00 001456899999999999986555554343 569999999999999999999999999999
Q ss_pred EeCCCCceeEEee---cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee--------------------------
Q 006808 144 IDPLTGSLLGKFR---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-------------------------- 192 (630)
Q Consensus 144 wd~~~~~~~~~~~---~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~-------------------------- 192 (630)
||-.+|+.+..+. +|.+.|++++|+||++.+++++ .+++|||+.+.+++
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 9999999999998 8999999999999999999998 79999999765433
Q ss_pred -----------------eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc------eee---------
Q 006808 193 -----------------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------SCV--------- 240 (630)
Q Consensus 193 -----------------~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~------~~~--------- 240 (630)
..+.||...|+++..+|++++|++++ .||.|.-|+..++..... ..+
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 24457899999999999999999988 699999999876642100 000
Q ss_pred --e------------------------eecCCcee--------eeeE-EecC---------------------CccCCCC
Q 006808 241 --L------------------------AMEHPAVF--------MDCR-CIDN---------------------GGVDDAG 264 (630)
Q Consensus 241 --~------------------------~~~~~~~~--------~~~~-~~~~---------------------~~~~~~~ 264 (630)
+ .++++... +.++ |... ..++|++
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG 455 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC
Confidence 0 00000000 0000 0000 0245999
Q ss_pred CEEEEEecCCcEEEEEcCCcccc-----cccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccC
Q 006808 265 LYVLAISETGVCYIWYGQNIEEL-----RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK 339 (630)
Q Consensus 265 ~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~ 339 (630)
..++.|+.||.|+||.+.-+... ..+......+. ++|+++ +++++-..+.+-+|+ -....
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va----ySpd~~----yla~~Da~rkvv~yd-------~~s~~ 520 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA----YSPDGA----YLAAGDASRKVVLYD-------VASRE 520 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCCceEEE----ECCCCc----EEEEeccCCcEEEEE-------cccCc
Confidence 99999999999999998665432 22333333333 799988 888887654332222 11112
Q ss_pred ceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 340 PSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 340 ~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.......+|+..|.+++|||++..+ +|||-|.++.+|++++.
T Consensus 521 ~~~~~w~FHtakI~~~aWsP~n~~v-ATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 521 VKTNRWAFHTAKINCVAWSPNNKLV-ATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eecceeeeeeeeEEEEEeCCCceEE-EeccccceEEEEEccCh
Confidence 2333556799999999999999999 99999999999999754
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=271.48 Aligned_cols=235 Identities=17% Similarity=0.232 Sum_probs=204.2
Q ss_pred cccceeEeEECCC--CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.| .++.|+|. +.-+|+|+.||++++|++.+...+..+.+|...+..+.|.|.
T Consensus 218 ~~v--~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs----------------------- 272 (459)
T KOG0272|consen 218 SRV--GAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS----------------------- 272 (459)
T ss_pred cce--eeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC-----------------------
Confidence 455 55699996 669999999999999999988888888866655555555444
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
|.+|++++.|.+-++||+.++..+ -...||+.+|.+++|+|||..+++||.|..-++||+++|+++..+.+|..+
T Consensus 273 ----G~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~ 347 (459)
T KOG0272|consen 273 ----GKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE 347 (459)
T ss_pred ----Cceeeecccccchhhcccccchhh-HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccc
Confidence 899999999999999999999876 445699999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
|.+++|+|+|..||+|+ ++++|||++..+.+.++++|..-|+.|.|+| .|.+|++++ .|+++++|...+..+.
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~~--- 423 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSPL--- 423 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCcccc---
Confidence 99999999999999999 8999999999999999999999999999999 566676666 7999999998887633
Q ss_pred eeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 239 CVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
..+ +|...++ ++.++ +++.+|++++.|.++++|.
T Consensus 424 --ksLaGHe~kV~-s~Dis-----~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 --KSLAGHEGKVI-SLDIS-----PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --hhhcCCccceE-EEEec-----cCCceEEEeccCceeeecc
Confidence 333 4555544 45555 8999999999999999995
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.9e-35 Score=272.19 Aligned_cols=280 Identities=15% Similarity=0.197 Sum_probs=231.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+|..+ .|.|+|+.|++|+..|.+.+|+..+......+..|.+. +.++.|.+.
T Consensus 97 c~V~~v--~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~------------------Vr~m~ws~~------- 149 (464)
T KOG0284|consen 97 CPVNVV--RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP------------------VRTMKWSHN------- 149 (464)
T ss_pred cceeeE--EEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc------------------ceeEEEccC-------
Confidence 477555 99999999999999999999997544433334445444 445555554
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.++++|..+|.|++|++.-+... .+...|...|++++|+|+...|++|+.||+|+|||....+..+.+.+|...|.
T Consensus 150 --g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 150 --GTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred --CCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 889999999999999999876654 44445668999999999999999999999999999999999899999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+++|+|...+|++++ +.|++||.+++.++.++.+|...|..+.|+|++++|++++ .|..++++|+++.+. ++
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkE-----l~ 300 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKE-----LF 300 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHH-----HH
Confidence 999999999999999 7999999999999999999999999999999999999988 799999999996542 23
Q ss_pred eec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 242 AME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
.+. |...+.+..|.+ -...++.+|+.||.|..|.+...+.+... +
T Consensus 301 ~~r~Hkkdv~~~~WhP-----~~~~lftsgg~Dgsvvh~~v~~~~p~~~i--------------~--------------- 346 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHP-----LNESLFTSGGSDGSVVHWVVGLEEPLGEI--------------P--------------- 346 (464)
T ss_pred Hhhcchhhheeecccc-----ccccceeeccCCCceEEEeccccccccCC--------------C---------------
Confidence 333 556566655554 45688999999999999988522221110 0
Q ss_pred ccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..|...|++++|+|=|.+| ++||.|+++|+|..
T Consensus 347 -------------------------~AHd~~iwsl~~hPlGhil-~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 347 -------------------------PAHDGEIWSLAYHPLGHIL-ATGSNDRTVRFWTR 379 (464)
T ss_pred -------------------------cccccceeeeeccccceeE-eecCCCcceeeecc
Confidence 1677899999999999999 99999999999976
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.1e-33 Score=253.95 Aligned_cols=284 Identities=14% Similarity=0.216 Sum_probs=238.0
Q ss_pred cceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 6 V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
||++ ++.|-.++|++|+.|++++|||+.+|++..++.+|...+..+.+++.
T Consensus 154 Vr~v--avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r--------------------------- 204 (460)
T KOG0285|consen 154 VRSV--AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR--------------------------- 204 (460)
T ss_pred EEEE--eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc---------------------------
Confidence 5444 99999999999999999999999999999999999888887777765
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
..++++++.|+.|+.||+..++.+..+ .||-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|.++
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence 678999999999999999999998666 5899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.+.|....+++|+ ++|++||+..|+...++..|...|++++.+|....|++++ .| .|+-|++..+... ..+
T Consensus 284 ~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~-----~nl 356 (460)
T KOG0285|consen 284 MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFL-----QNL 356 (460)
T ss_pred EeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchh-----hcc
Confidence 9999888999998 8999999999999999999999999999999988888776 34 6999999988643 224
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 323 (630)
..+..++..+... +..++++|+.+|.|.+||.++|-..+..+. .+-.|+.+
T Consensus 357 sgh~~iintl~~n------sD~v~~~G~dng~~~fwdwksg~nyQ~~~t--------------------~vqpGSl~--- 407 (460)
T KOG0285|consen 357 SGHNAIINTLSVN------SDGVLVSGGDNGSIMFWDWKSGHNYQRGQT--------------------IVQPGSLE--- 407 (460)
T ss_pred ccccceeeeeeec------cCceEEEcCCceEEEEEecCcCcccccccc--------------------cccCCccc---
Confidence 4555566666654 456888999999999999988855332211 11112221
Q ss_pred cCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
....|.+.+|...|..| +||..|++|++|.-.
T Consensus 408 ------------------------sEagI~as~fDktg~rl-it~eadKtIk~~keD 439 (460)
T KOG0285|consen 408 ------------------------SEAGIFASCFDKTGSRL-ITGEADKTIKMYKED 439 (460)
T ss_pred ------------------------cccceeEEeecccCceE-EeccCCcceEEEecc
Confidence 11246677788888888 999999999999753
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5e-33 Score=280.69 Aligned_cols=239 Identities=15% Similarity=0.219 Sum_probs=206.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcE-------------------------------EEEecccccccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-------------------------------QTEFADIASTETTSLYGN 57 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-------------------------------~~~~~~~~~~~~~~~~s~ 57 (630)
.|+.|++|+.+||.|-.|..|++|.+...+. ..++.+|.+++..+.|+|
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 6779999999999999999999999874321 122333444444444443
Q ss_pred cccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC
Q 006808 58 RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137 (630)
Q Consensus 58 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 137 (630)
+ .++|++|+.|++|++|.+.+..++..+. ||..||+++.|+|.|-+|+|+|.
T Consensus 462 d---------------------------~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 462 D---------------------------RRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred c---------------------------ccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCC
Confidence 3 7899999999999999999999986664 99999999999999999999999
Q ss_pred CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEE
Q 006808 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
|++.++|.....++.+.|.+|-+.|.|+.|+|+..++++|+ .+|++||+.+|..++.|.||.++|++++|||+|++|+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 99999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred EEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
+++ .|+.|.+||+.++... ....+| ...+..+.|+ .+|..||+|+.|+.|++||+.....
T Consensus 594 Sg~-ed~~I~iWDl~~~~~v----~~l~~H-t~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 594 SGD-EDGLIKIWDLANGSLV----KQLKGH-TGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred ecc-cCCcEEEEEcCCCcch----hhhhcc-cCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhcc
Confidence 998 6999999999998754 233445 6667777787 9999999999999999999865433
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=245.15 Aligned_cols=285 Identities=14% Similarity=0.185 Sum_probs=227.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECC-CCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+.| .++.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+.+..+.|..+
T Consensus 47 ~geI--~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d----------------------- 101 (338)
T KOG0265|consen 47 KGEI--YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD----------------------- 101 (338)
T ss_pred cceE--EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-----------------------
Confidence 3567 677999999999999999999999964 33345566666666555555444
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
++.|++++.|.+|+.||+.+|+...++ ++|..-|+++.-+.-|.. +.+++.|+++++||+++..+++++. ...
T Consensus 102 ----~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 102 ----GSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred ----CCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence 788999999999999999999998776 479999999986655554 6678899999999999999988876 356
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
+++++.|..++..+.+|+ +.|++||++.+....++.||..+|+.+..+|+|.++++-+ .|.++++||++...+. .+
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~-~R 253 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPS-QR 253 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCC-Cc
Confidence 899999999999999999 8999999999999999999999999999999999999988 5999999999875443 22
Q ss_pred eeeeec--CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 239 CVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 239 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
|+..+. .+......+..+ ++|++..+.+|+.|..+++||..+...+
T Consensus 254 ~v~if~g~~hnfeknlL~cs---wsp~~~~i~ags~dr~vyvwd~~~r~~l----------------------------- 301 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCS---WSPNGTKITAGSADRFVYVWDTTSRRIL----------------------------- 301 (338)
T ss_pred eEEEeecchhhhhhhcceee---ccCCCCccccccccceEEEeecccccEE-----------------------------
Confidence 333322 222222222211 2389999999999999999997433221
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..+.+|.+.|++++|+|...+| .+++.|+++++-++
T Consensus 302 --------------------------yklpGh~gsvn~~~Fhp~e~ii-ls~~sdk~i~lgei 337 (338)
T KOG0265|consen 302 --------------------------YKLPGHYGSVNEVDFHPTEPII-LSCSSDKTIYLGEI 337 (338)
T ss_pred --------------------------EEcCCcceeEEEeeecCCCcEE-EEeccCceeEeecc
Confidence 1344889999999999999999 99999999987543
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-32 Score=239.30 Aligned_cols=240 Identities=16% Similarity=0.215 Sum_probs=195.5
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
-|.++ +.++||+++++++.|+++++||+.+|+..+.|-+|...+.++.|+++
T Consensus 65 ~v~dv--~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d-------------------------- 116 (315)
T KOG0279|consen 65 FVSDV--VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD-------------------------- 116 (315)
T ss_pred Eecce--EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC--------------------------
Confidence 35445 89999999999999999999999999999999887766665555555
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
++.|++|+.|.+|++|++..+.........|+..|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.+
T Consensus 117 -n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 117 -NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred -CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence 6779999999999999998765553333334789999999997 6789999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
+.++++|||.++++|+ |.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++........
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cCCceEEEeccchhhhhhccc
Confidence 9999999999999998 899999999999987776 88899999999986555544 366799999998764311111
Q ss_pred eeecC-----CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 241 LAMEH-----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 241 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
...+. ....+. ++|+ ++|..|++|-.|+.|++|.+.
T Consensus 273 d~~g~s~~~~~~~cls-laws-----~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLS-LAWS-----ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccCCcEEEE-EEEc-----CCCcEEEeeecCCcEEEEEee
Confidence 11111 223333 3444 899999999999999999863
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=239.72 Aligned_cols=232 Identities=17% Similarity=0.280 Sum_probs=199.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCC------cEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++|+|+|.|+++|+|+-|+...||++.+. ....++.+|.+...++. |..
T Consensus 101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~------------------f~d------- 155 (343)
T KOG0286|consen 101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR------------------FLD------- 155 (343)
T ss_pred EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEE------------------EcC-------
Confidence 89999999999999999999999999855 34455666655444433 333
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
...|+++++|.+..+||+.+++....+ .+|.+.|.++.++| +++.|++|+-|+..++||++.+.++++|.+|...
T Consensus 156 ---D~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 156 ---DNHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred ---CCceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence 345899999999999999999998666 58999999999999 9999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
|.+++|.|+|.-+++|+ +++++||++..+.+..+... ..+|++++||..|++|+++. .|.++.+||.-.++..
T Consensus 232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~v-- 308 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGERV-- 308 (343)
T ss_pred cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccceE--
Confidence 99999999999999999 89999999999988888632 35899999999999999886 6999999998887643
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
-.+..+..-+.++..+ |||..+++|+.|..++||.
T Consensus 309 ---g~L~GHeNRvScl~~s-----~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 ---GVLAGHENRVSCLGVS-----PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---EEeeccCCeeEEEEEC-----CCCcEEEecchhHheeecC
Confidence 2333455566777776 9999999999999999994
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=277.30 Aligned_cols=280 Identities=23% Similarity=0.325 Sum_probs=227.2
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..| .|+.|+|+|++|++++.|+.+++|+..++. ...++.+|...+..+.|+++
T Consensus 160 ~sv--~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d----------------------- 214 (456)
T KOG0266|consen 160 PSV--TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD----------------------- 214 (456)
T ss_pred Cce--EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-----------------------
Confidence 456 566999999999999999999999998777 66666666655555555554
Q ss_pred cccCCcEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+.++++|+.|++|+|||+.. +..+..+ .+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|..
T Consensus 215 ----~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~ 289 (456)
T KOG0266|consen 215 ----GSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD 289 (456)
T ss_pred ----CcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence 77899999999999999944 4566454 59999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCc--eeeEeecCCCC--eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~--v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
+|++++|++++.+|++++ +.|++||+.++. ++..+.++... ++++.|+|++.++++++ .|+.+++|++..+..
T Consensus 290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKS 368 (456)
T ss_pred ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcc
Confidence 999999999999999998 899999999998 56777777655 99999999999999988 699999999998764
Q ss_pred ccceeeeeecCCce--eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhh
Q 006808 235 QSASCVLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (630)
Q Consensus 235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (630)
. .. ...|... .+....+ ++.+.++++|+.|+.|++|+..++..+...
T Consensus 369 ~---~~-~~~~~~~~~~~~~~~~-----~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l---------------------- 417 (456)
T KOG0266|consen 369 V---GT-YTGHSNLVRCIFSPTL-----STGGKLIYSGSEDGSVYVWDSSSGGILQRL---------------------- 417 (456)
T ss_pred e---ee-ecccCCcceeEecccc-----cCCCCeEEEEeCCceEEEEeCCccchhhhh----------------------
Confidence 4 11 2223332 2222222 378999999999999999999776543322
Q ss_pred hhhhccccccccCCceeEEEEEcCccCceeeEEecc-CCCcEEEeecCCcceeecccc--ceecccccee
Q 006808 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (630)
Q Consensus 313 ~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~ 379 (630)
.+| ...+..++++|...++ ++++ .|+.+++|..
T Consensus 418 ---------------------------------~~h~~~~~~~~~~~~~~~~~-~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 418 ---------------------------------EGHSKAAVSDLSSHPTENLI-ASSSFEGDGLIRLWKY 453 (456)
T ss_pred ---------------------------------cCCCCCceeccccCCCcCee-eecCcCCCceEEEecC
Confidence 244 4567778888888888 7666 6888888864
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.5e-31 Score=231.60 Aligned_cols=249 Identities=18% Similarity=0.297 Sum_probs=204.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.+.|+.+ ...||+++||+++. ..||+||+.++. .+.+|.+|...+..+.|..+
T Consensus 40 dsqVNrL--eiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d---------------------- 94 (311)
T KOG0315|consen 40 DSQVNRL--EITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD---------------------- 94 (311)
T ss_pred ccceeeE--EEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeec----------------------
Confidence 4567666 99999999999987 589999998876 47888877766666555555
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec-CC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-ST 159 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~ 159 (630)
+.++++|+.||+++|||++...+...+ .|.++|+++..+|+...|++|..+|.|++||+....+...+-. ..
T Consensus 95 -----grWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 95 -----GRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred -----CeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 889999999999999999996665333 5889999999999998999999999999999998877766544 34
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCc------eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHK------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~------~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.+|.++.+.|||.+++.+. |++++|++-+.. ++..|+.|.+.+..+.+||++++|+++++ |.+++||+...
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-dktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-DKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC-CceEEEEecCC
Confidence 5899999999999999988 999999987643 45678899999999999999999999985 99999999988
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.-+. ....-.|......|. |+ .||.||++|+.|+.+++|++..++.++...+.
T Consensus 247 ~~kl---e~~l~gh~rWvWdc~-FS-----~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 247 FFKL---ELVLTGHQRWVWDCA-FS-----ADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred ceee---EEEeecCCceEEeee-ec-----cCccEEEecCCCCceeecccccCceeeecCCc
Confidence 6211 122233555555554 44 79999999999999999999999887765543
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.8e-31 Score=242.06 Aligned_cols=323 Identities=15% Similarity=0.123 Sum_probs=255.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++| .+++.+|+.+++|||+.|..-.||+..+|....++.+|..++.++.|+.+
T Consensus 64 ~~sv--Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd------------------------ 117 (399)
T KOG0296|consen 64 TDSV--FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD------------------------ 117 (399)
T ss_pred CCce--EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC------------------------
Confidence 5678 77799999999999999999999999999999999888777666666655
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|..+|.|+||...++...+.+. ..-..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++
T Consensus 118 ---gtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 118 ---GTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred ---ceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCc
Confidence 8999999999999999999999887775 345678999999999999999999999999999988888999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce-
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS- 238 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~- 238 (630)
++-.|.|+|+.++++. |+|++||+.+++++..+.+. .....++.++..+..++.+. .++.+++-+..+++.....
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc-CCccEEEEccccceEEEecC
Confidence 9999999999999998 99999999999998887633 34567788888887777766 5888888877776643100
Q ss_pred ---eee--eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc--ccccCceeEEeeccCCCcccccchh
Q 006808 239 ---CVL--AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE--LRNTKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 239 ---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
... ...+....+..+.++ ..=.+.|+|+.||+|.|||+...+. +..+......+. +.+ .
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~----w~~-t---- 338 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK----WLN-T---- 338 (399)
T ss_pred CCCccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhheeccCCCceEEEE----EcC-c----
Confidence 001 111222223333333 3345678889999999999876644 334444444433 344 3
Q ss_pred hhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
++|++++.+|.++.|+ .......-++.+|...|++++++|+++++ +|+|.|++.++.++
T Consensus 339 ~~l~t~c~~g~v~~wD--------aRtG~l~~~y~GH~~~Il~f~ls~~~~~v-vT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWD--------ARTGQLKFTYTGHQMGILDFALSPQKRLV-VTVSDDNTALVFEV 397 (399)
T ss_pred chheeeccCceEEeee--------ccccceEEEEecCchheeEEEEcCCCcEE-EEecCCCeEEEEec
Confidence 3999999999887755 33445555788999999999999999999 99999999988765
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.5e-31 Score=249.17 Aligned_cols=336 Identities=17% Similarity=0.226 Sum_probs=251.8
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCC--cE--EEEecccccccccccccccccccccccceeeEEecccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKG--QV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~--~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
.++| ++++|+|-.. .+|+|+.|-+.++|++... .+ ...++.. +...........++|+++|+..
T Consensus 178 ~~~V--~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~--------~~~~~~s~~~nkdVT~L~Wn~~- 246 (524)
T KOG0273|consen 178 ESEV--FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHC--------IREGGKSVPSNKDVTSLDWNND- 246 (524)
T ss_pred CCce--EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhh--------hhhhcccCCccCCcceEEecCC-
Confidence 4578 8999999776 9999999999999998641 11 1111100 0000011233568999999886
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+.+|++|+.+|.+++|+...+.. ..+..|.++|.++.|+..|.+|++++.|+++.+||..++...+.|.-
T Consensus 247 --------G~~LatG~~~G~~riw~~~G~l~--~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 247 --------GTLLATGSEDGEARIWNKDGNLI--STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred --------CCeEEEeecCcEEEEEecCchhh--hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 88999999999999999875544 33457999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 158 STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
|..+-..+.|-.+..+..+.. +.|+|+.+...+++.+|.+|.++|.++.|+|.|..|++++ +|++++||+.......
T Consensus 317 ~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~- 394 (524)
T KOG0273|consen 317 HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSV- 394 (524)
T ss_pred ccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcch-
Confidence 988877889987655444444 8999999999999999999999999999999999999987 6999999998765422
Q ss_pred ceeeeeecCCceeeeeEEecCCcc--CC-CCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGV--DD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
.-...|...+.+..|.+.+.. +| .+..+++++.|++|++||+..+.++..+..+...+.... |+|+++ +
T Consensus 395 ---~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~----y 466 (524)
T KOG0273|consen 395 ---HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGR----Y 466 (524)
T ss_pred ---hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCc----E
Confidence 112235555555555432221 12 467899999999999999999998877644443333322 899998 9
Q ss_pred hhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+++|++|+.+.+++.+ ....++.+ ...+.|..++|+.+|.+| ..+-.|+.+.+-++
T Consensus 467 lAsGs~dg~V~iws~~--------~~~l~~s~-~~~~~Ifel~Wn~~G~kl-~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTK--------TGKLVKSY-QGTGGIFELCWNAAGDKL-GACASDGSVCVLDL 522 (524)
T ss_pred EEecCCCCeeEecccc--------chheeEee-cCCCeEEEEEEcCCCCEE-EEEecCCCceEEEe
Confidence 9999999987776533 33333333 233458999999999998 44444777766544
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=3.1e-31 Score=267.76 Aligned_cols=200 Identities=19% Similarity=0.333 Sum_probs=187.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++|| ..+.|+|+.++|++||.|+++|+|.+.+..++-.+++|..++..+.|+|.
T Consensus 451 ~GPV--yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~------------------------ 504 (707)
T KOG0263|consen 451 SGPV--YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR------------------------ 504 (707)
T ss_pred CCce--eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC------------------------
Confidence 6899 66699999999999999999999999999999999999888887777766
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
|-++++|+.|++-++|........ +++.+|-+.|.|+.|+|+.+++++||.|.+|++||+.+|..++.|.+|.++|
T Consensus 505 ---GyYFatas~D~tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 505 ---GYYFATASHDQTARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV 580 (707)
T ss_pred ---ceEEEecCCCceeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence 888999999999999999987776 5556999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.+++|+|+|++|++|+ |.|.+||+.++..+..+.+|++.|.++.|+.+|..|+++| .|++|++||+....
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-CCCeEEEEEchhhc
Confidence 9999999999999999 9999999999999999999999999999999999999998 69999999987654
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.2e-31 Score=246.04 Aligned_cols=282 Identities=17% Similarity=0.204 Sum_probs=222.5
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
..| .-+.||++|+|||+++.|.+..+|.+..-. ..+++.+|..++. -+.|.|.
T Consensus 225 dEV--Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~------------------yi~wSPD---- 280 (519)
T KOG0293|consen 225 DEV--WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVS------------------YIMWSPD---- 280 (519)
T ss_pred CcE--EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceE------------------EEEECCC----
Confidence 456 556999999999999999999999875433 3566666655544 4555554
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
.+++++|+.+..+.+||+.+|.....+..+|...+.+++|.|||..+++|+.|+++..||+. |.....+++...
T Consensus 281 -----dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~ 354 (519)
T KOG0293|consen 281 -----DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD 354 (519)
T ss_pred -----CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc
Confidence 67799999999999999999999877777777899999999999999999999999999985 656666665443
Q ss_pred -CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 161 -GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 161 -~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
.|.+++.++||+++++.+ ..|++|+..+........ ...+|++++.|.+++++++.- .+..|++||+...+..
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv-- 430 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLV-- 430 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHH--
Confidence 799999999999988876 799999987765544333 456899999999999988876 6899999999965432
Q ss_pred eeeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 238 SCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
....+| .+.++--.||.. .+..++++|++|+.|+||+..+|+.+.
T Consensus 431 --~kY~Ghkq~~fiIrSCFgg----~~~~fiaSGSED~kvyIWhr~sgkll~---------------------------- 476 (519)
T KOG0293|consen 431 --RKYFGHKQGHFIIRSCFGG----GNDKFIASGSEDSKVYIWHRISGKLLA---------------------------- 476 (519)
T ss_pred --HHhhcccccceEEEeccCC----CCcceEEecCCCceEEEEEccCCceeE----------------------------
Confidence 222233 334444455541 455899999999999999987775532
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.||...|.|++|.|......+|+|.|+++|+|...
T Consensus 477 ---------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 477 ---------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ---------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 3448888999999999988766999999999999653
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.1e-30 Score=255.85 Aligned_cols=247 Identities=15% Similarity=0.248 Sum_probs=218.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+..|+++ .|+|...+++++-.+|.|.|||.++...+..|.-..-++.+..|-..
T Consensus 13 SdRVKsV--d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR------------------------ 66 (794)
T KOG0276|consen 13 SDRVKSV--DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR------------------------ 66 (794)
T ss_pred CCceeee--ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec------------------------
Confidence 5567555 99999999999999999999999999999988765555555444433
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~ 161 (630)
.+++++|+.|+.|+||+..+++.+..+ .+|...|++++.+|...+++++|.|-+|++||.+. ..+.++|.+|...
T Consensus 67 ---knWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 67 ---KNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred ---cceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence 788999999999999999999999676 58999999999999999999999999999999875 4788999999999
Q ss_pred eEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC--cEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 162 v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~--~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
|.+++|+| |.+.+++++ ++|++|.+.+..+..++.+|...|+++.|-+.| .||++++ +|.+|+|||..+..
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~--- 218 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKS--- 218 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHH---
Confidence 99999999 778999999 899999999999999999999999999998755 6999988 79999999998865
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
|+.++..+..-+..++|. |.=..|++|++||+++||+..|.+.-.+.
T Consensus 219 --CV~TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 219 --CVQTLEGHTNNVSFVFFH-----PELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred --HHHHhhcccccceEEEec-----CCCcEEEEecCCccEEEecCcceehhhhh
Confidence 777888777778888887 88899999999999999998887765543
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.8e-30 Score=225.26 Aligned_cols=248 Identities=17% Similarity=0.313 Sum_probs=205.3
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.++|+++ .|+.||+|.++|+.|.+|++|+...|.+++++.+|...+.....+.+
T Consensus 16 ~qgaV~av--ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D----------------------- 70 (307)
T KOG0316|consen 16 AQGAVRAV--RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD----------------------- 70 (307)
T ss_pred cccceEEE--EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-----------------------
Confidence 35789555 99999999999999999999999999999999999877766555544
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC--CceeEEeecCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--GSLLGKFRAST 159 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~ 159 (630)
+..+++|++|..|.+||+.+|+...++ .+|.+.|+.+.|+.+...+++|+.|.++++||.++ .++++.+....
T Consensus 71 ----nskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 71 ----NSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred ----ccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 667899999999999999999999666 58999999999999999999999999999999985 47888888888
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
..|.++.++ +..+++|+ |+++.||++.|+.....-+ .||++++|+++++..++++ -|+++++.|-.+++..
T Consensus 146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL-- 218 (307)
T KOG0316|consen 146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLL-- 218 (307)
T ss_pred CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEee-ccceeeecccchhHHH--
Confidence 899999886 45777777 9999999999987655544 5799999999999999988 5999999999998865
Q ss_pred eeeeeecCCce-eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 238 SCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
..+. +|... .-.-+++. ....++++|++||.+++||+....++......
T Consensus 219 -~sYk-Ghkn~eykldc~l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 219 -KSYK-GHKNMEYKLDCCLN-----QSDTHVFSGSEDGKVYFWDLVDETQISKLSVV 268 (307)
T ss_pred -HHhc-ccccceeeeeeeec-----ccceeEEeccCCceEEEEEeccceeeeeeccC
Confidence 2222 33322 22223333 56689999999999999999888776554433
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2e-29 Score=248.82 Aligned_cols=278 Identities=24% Similarity=0.327 Sum_probs=228.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++++|++++.||.|++|++.++.....+..|... +..+.|.+.
T Consensus 9 ~~~i--~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~------ 62 (289)
T cd00200 9 TGGV--TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP------------------VRDVAASAD------ 62 (289)
T ss_pred CCCE--EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc------------------eeEEEECCC------
Confidence 4688 56699999999999999999999999988776666544333 335555554
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++++.+|.|++|++.+++....+. .|...|.++.|++++.++++++.++.+.+||+.+++....+..|...+
T Consensus 63 ---~~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 138 (289)
T cd00200 63 ---GTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138 (289)
T ss_pred ---CCEEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE
Confidence 5679999999999999999877665554 688899999999998888888889999999999999999999888899
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.+++|+|++.++++++ +.|++||+++++.+..+..|...+.++.|+|+++.+++++ .++.|++||+..++..
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~----- 212 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCL----- 212 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCcee-----
Confidence 9999999999998886 8999999999998888999999999999999999999888 4999999999876533
Q ss_pred eee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccc
Q 006808 241 LAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (630)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (630)
..+ .+.. .+..+.+. |++.++++++.+|.|++|+..+++.+.
T Consensus 213 ~~~~~~~~-~i~~~~~~-----~~~~~~~~~~~~~~i~i~~~~~~~~~~------------------------------- 255 (289)
T cd00200 213 GTLRGHEN-GVNSVAFS-----PDGYLLASGSEDGTIRVWDLRTGECVQ------------------------------- 255 (289)
T ss_pred cchhhcCC-ceEEEEEc-----CCCcEEEEEcCCCcEEEEEcCCceeEE-------------------------------
Confidence 223 2333 44556665 788888888889999999986533211
Q ss_pred cccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.+..|...+.+++|+|++.+| ++++.|+.+++|+
T Consensus 256 ------------------------~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~ 289 (289)
T cd00200 256 ------------------------TLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD 289 (289)
T ss_pred ------------------------EccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence 111445578899999999999 9999999999995
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.2e-29 Score=282.12 Aligned_cols=304 Identities=16% Similarity=0.179 Sum_probs=226.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+.| .+++|+|+|++||+|+.|+.|+||++.+..... ........ . ..+ ...+.++.|.+..
T Consensus 483 ~~~V--~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--~~~~~~~~----~---~~~--~~~v~~l~~~~~~----- 544 (793)
T PLN00181 483 SNLV--CAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--RDIHYPVV----E---LAS--RSKLSGICWNSYI----- 544 (793)
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCEEEEEECCcccccc--cccccceE----E---ecc--cCceeeEEeccCC-----
Confidence 3567 556999999999999999999999975421000 00000000 0 001 2356788998765
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+.+|++++.||.|++||+.+++.+..+ .+|...|++++|+| ++.+|++|+.||+|++||+.++.++..+..+ ..
T Consensus 545 ---~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 545 ---KSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred ---CCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 668999999999999999998887555 57999999999997 7889999999999999999999998888754 67
Q ss_pred eEEEEEc-cCCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc-c
Q 006808 162 ISCMAVS-SDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S 236 (630)
Q Consensus 162 v~~l~~~-p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~-~ 236 (630)
+.++.|+ ++|.+|++|+ |.|++||+++++ .+..+.+|...|.++.|. ++.+|++++ .|+.|++||+...... .
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISGIN 697 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccccC
Confidence 8999995 5789999998 899999998865 567788999999999997 677888887 6999999999754210 0
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
...+..+..+...+.++.++ |++.+|++|+.||.|++|+......+..+. +..... +
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s-----~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-----------~~~~~~-----~-- 754 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLS-----VSDGYIATGSETNEVFVYHKAFPMPVLSYK-----------FKTIDP-----V-- 754 (793)
T ss_pred CcceEEEcCCCCCeeEEEEc-----CCCCEEEEEeCCCEEEEEECCCCCceEEEe-----------cccCCc-----c--
Confidence 11333444445556667776 899999999999999999975443221110 000000 0
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+. ....|...|.+++|+|+|..| ++|+.|+.+++|++
T Consensus 755 -----------------~~~-------~~~~~~~~V~~v~ws~~~~~l-va~~~dG~I~i~~~ 792 (793)
T PLN00181 755 -----------------SGL-------EVDDASQFISSVCWRGQSSTL-VAANSTGNIKILEM 792 (793)
T ss_pred -----------------ccc-------ccCCCCcEEEEEEEcCCCCeE-EEecCCCcEEEEec
Confidence 000 012455679999999999999 99999999999985
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=249.07 Aligned_cols=283 Identities=11% Similarity=0.126 Sum_probs=229.5
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..|.++ .|.| .+.+|++|+.|+.|+||++.. +.++++|.+|..++..+.|+..
T Consensus 215 kgvsai--~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~----------------------- 269 (503)
T KOG0282|consen 215 KGVSAI--QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC----------------------- 269 (503)
T ss_pred cccchh--hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc-----------------------
Confidence 456334 8999 899999999999999999876 8999999999998888888877
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..+++++.|+.|++||+.+|++..++.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+
T Consensus 270 ----g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg 343 (503)
T KOG0282|consen 270 ----GTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG 343 (503)
T ss_pred ----CCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence 78899999999999999999999988743 3578999999988 7799999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
.|..+.|-++|+.+++++ +++++|+.+.+..++... .+.....++..+|++.++++-+ .|+.|.++.+...-+.+.
T Consensus 344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccCH
Confidence 999999999999999998 899999998876655432 2233566888999999999887 599999999766544322
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
...+.-..-.....-+.|+ |||.+|++|+.||.+.+||.++-+.+.
T Consensus 423 kK~feGh~vaGys~~v~fS-----pDG~~l~SGdsdG~v~~wdwkt~kl~~----------------------------- 468 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFS-----PDGRTLCSGDSDGKVNFWDWKTTKLVS----------------------------- 468 (503)
T ss_pred hhhhcceeccCceeeEEEc-----CCCCeEEeecCCccEEEeechhhhhhh-----------------------------
Confidence 2333322122223334455 999999999999999999986655432
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+++.|...++.+.|+|-..--++|+++||.|++|+
T Consensus 469 --------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 --------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --------------------------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 23366677888889987664448999999999995
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.4e-29 Score=240.55 Aligned_cols=248 Identities=14% Similarity=0.276 Sum_probs=210.4
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .+++|+.+|++||+|+.||.++||+. +|.++.++..|.+++. .+.|+-.
T Consensus 236 kdV--T~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~------------------slKWnk~------- 287 (524)
T KOG0273|consen 236 KDV--TSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIF------------------SLKWNKK------- 287 (524)
T ss_pred CCc--ceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceE------------------EEEEcCC-------
Confidence 467 45599999999999999999999996 5777777776665554 5555443
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+++|++++.||++.+||..++.....+. -|..+..++.|-.+ ..|++++.|+.|+++-+....++.+|.+|.++|.
T Consensus 288 --G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~ 363 (524)
T KOG0273|consen 288 --GTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN 363 (524)
T ss_pred --CCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence 8999999999999999999999886664 58888788999754 4689999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC---------cEEEEEeeCCCeEEEEEcCCC
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---------KYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~---------~~l~~~~~~d~~i~vwd~~~~ 232 (630)
++.|+|.|.+|++++ ++++||+.........+.+|...|..+.|+|.| ..+++++ .|+++++||+..+
T Consensus 364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~g 442 (524)
T KOG0273|consen 364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESG 442 (524)
T ss_pred EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCC
Confidence 999999999999999 899999998888888999999999999999965 3577777 5999999999998
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
. ++..+..+...+..+.|+ |+|+++|+|+.||.|+||+.++++.++......
T Consensus 443 v-----~i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 443 V-----PIHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred c-----eeEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 7 444553444445566666 999999999999999999999999988766543
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.3e-31 Score=241.98 Aligned_cols=279 Identities=16% Similarity=0.271 Sum_probs=223.6
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
++..| .|+.| |...+++|..|++|+|||..+-.+...+.+|.+++. |+.+.
T Consensus 196 ~skgV--YClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL------------------CLqyd------- 246 (499)
T KOG0281|consen 196 NSKGV--YCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL------------------CLQYD------- 246 (499)
T ss_pred cCCce--EEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEE------------------eeecc-------
Confidence 45667 55566 456899999999999999999999998887776554 44332
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eeEEeecC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAS 158 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~ 158 (630)
...|++|+.|.+|++||+++|+++.++. +|...|..+.|+ +.++++++.|.++.+||+.+.. +.+.+.+|
T Consensus 247 ----~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH 319 (499)
T KOG0281|consen 247 ----ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH 319 (499)
T ss_pred ----ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh
Confidence 5679999999999999999999997765 799999999996 4599999999999999998764 34557889
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
...|..+.|+. +++++++ .+|++|++.+++.++++.+|...|.|+.+. ++++++++ .|.+|++||+..+.
T Consensus 320 rAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS-SDntIRlwdi~~G~--- 391 (499)
T KOG0281|consen 320 RAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGA--- 391 (499)
T ss_pred hhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC-CCceEEEEeccccH---
Confidence 99999999964 5898888 699999999999999999999999888774 77777776 59999999999987
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
|...++.+...+.++-|. .+.|++|+.||+|+|||+.++..-+.. .+ .+
T Consensus 392 --cLRvLeGHEeLvRciRFd-------~krIVSGaYDGkikvWdl~aaldpra~---------------~~-----~~-- 440 (499)
T KOG0281|consen 392 --CLRVLEGHEELVRCIRFD-------NKRIVSGAYDGKIKVWDLQAALDPRAP---------------AS-----TL-- 440 (499)
T ss_pred --HHHHHhchHHhhhheeec-------CceeeeccccceEEEEecccccCCccc---------------cc-----ch--
Confidence 455666777778888774 688999999999999999776542111 00 00
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
++.++..|++.|..+.| |...+ +++++|.+|-+|++.+.
T Consensus 441 ------------------------Cl~~lv~hsgRVFrLQF--D~fqI-vsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 441 ------------------------CLRTLVEHSGRVFRLQF--DEFQI-ISSSHDDTILIWDFLNG 479 (499)
T ss_pred ------------------------HHHhhhhccceeEEEee--cceEE-EeccCCCeEEEEEcCCC
Confidence 11123357777877777 45567 89999999999999653
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.3e-29 Score=220.33 Aligned_cols=289 Identities=14% Similarity=0.114 Sum_probs=217.1
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC---CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD 138 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d 138 (630)
+|.+ .+-.++|+|.. +.+|++|+.|..|++|+... -.+...+..+|...|++++|+|.|++|++||.|
T Consensus 12 gh~~-r~W~~awhp~~--------g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 12 GHKD-RVWSVAWHPGK--------GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred CCCC-cEEEEEeccCC--------ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 4444 45567777753 56899999999999999985 334445557899999999999999999999999
Q ss_pred CcEEEEeCCC--CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC---ceeeEeecCCCCeEEEEEeeCC
Q 006808 139 GMVCEIDPLT--GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 139 g~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~~ 211 (630)
.++.||.-.. .+++.++.+|...|.|++|+++|.+||+++ .+|-+|.+..+ .+...+..|+..|..+.|+|..
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 9999997553 478999999999999999999999999999 79999998754 4677889999999999999998
Q ss_pred cEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..|++++ .|++|++|.-..+. ...|..++..+...+-+..|. +.|..|++++.|++++||-..+.-... ++
T Consensus 163 dlL~S~S-YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~-----~~G~rl~s~sdD~tv~Iw~~~~~~~~~-~s 233 (312)
T KOG0645|consen 163 DLLFSCS-YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFD-----NIGSRLVSCSDDGTVSIWRLYTDLSGM-HS 233 (312)
T ss_pred ceeEEec-cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEec-----CCCceEEEecCCcceEeeeeccCcchh-cc
Confidence 8888887 69999999877422 244777777666566677777 889999999999999999854332111 11
Q ss_pred ceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCC-cceeeccccc
Q 006808 292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD-GVLLPMSQSL 370 (630)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~~s~s~ 370 (630)
.....+. .. ...|++++.|+.++++... ....+.........-..|...|++++|.|. ...| +||+.
T Consensus 234 r~~Y~v~----W~------~~~IaS~ggD~~i~lf~~s-~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L-~s~~D 301 (312)
T KOG0645|consen 234 RALYDVP----WD------NGVIASGGGDDAIRLFKES-DSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRL-ASGGD 301 (312)
T ss_pred cceEeee----ec------ccceEeccCCCEEEEEEec-CCCCCchHHHHHhhhcccccccceEEEcCCCCCce-eecCC
Confidence 1111111 11 1278888888766554322 001111112222233469899999999995 4455 99999
Q ss_pred eeccccceec
Q 006808 371 LKSKRGRYVQ 380 (630)
Q Consensus 371 d~~~~~w~~~ 380 (630)
||.+++|.++
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999874
No 36
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.5e-30 Score=234.13 Aligned_cols=284 Identities=20% Similarity=0.269 Sum_probs=227.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
-|..|||||+||++||.||-|.|||..+|+....++-...... --....+.|+.|... ...
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~f----------MMmd~aVlci~FSRD---------sEM 277 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNF----------MMMDDAVLCISFSRD---------SEM 277 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcce----------eecccceEEEeeccc---------HHH
Confidence 4669999999999999999999999999987665542111000 001335666666544 678
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++|+.||.|++|.+.+|.++.++..+|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..|++|...|+...|+
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeec--CCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
++|..+++++ |+|++|+..+..++.+|+. ...+|.++..-|.+ ..++++. ..++++|.++...-.. .+..
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQvVr----sfsS 432 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQVVR----SFSS 432 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccceEEe----eecc
Confidence 9999999998 9999999999999999863 34578888877754 4666665 6889999988764322 2222
Q ss_pred c--CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 244 E--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 244 ~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
+ ..+.++.+. .+ |.|.++.+.+.|+.++-|...+|..-+
T Consensus 433 GkREgGdFi~~~-lS-----pkGewiYcigED~vlYCF~~~sG~LE~--------------------------------- 473 (508)
T KOG0275|consen 433 GKREGGDFINAI-LS-----PKGEWIYCIGEDGVLYCFSVLSGKLER--------------------------------- 473 (508)
T ss_pred CCccCCceEEEE-ec-----CCCcEEEEEccCcEEEEEEeecCceee---------------------------------
Confidence 1 234455444 44 899999999999999999876665421
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
++..|...|+.++-+|...+| +|-+.|+.+++|.
T Consensus 474 ----------------------tl~VhEkdvIGl~HHPHqNll-AsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 ----------------------TLPVHEKDVIGLTHHPHQNLL-ASYSEDGLLKLWK 507 (508)
T ss_pred ----------------------eeecccccccccccCcccchh-hhhcccchhhhcC
Confidence 233566677778888888888 8999999999994
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=6.4e-28 Score=232.26 Aligned_cols=316 Identities=15% Similarity=0.158 Sum_probs=238.6
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEec---ccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
|+.|+|||++||+.+.||++.+||-.+|+.+..+. +|.+.+ ..+.|.|. +
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI------------------falsWsPD---------s 247 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI------------------FALSWSPD---------S 247 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE------------------EEEEECCC---------C
Confidence 45999999999999999999999999999999987 444444 45556555 6
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCC--CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~--~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
..+++++.|.+++|||+.+++++.++.-+.+ ..-.++-|. +..|++.+.+|+|.+++...+..+..+.+|...|++
T Consensus 248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 6799999999999999999999888765544 344555664 568999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceee-------------------------------------------------
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQ------------------------------------------------- 193 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~------------------------------------------------- 193 (630)
+..+|++++|++|+ |.|.-|+..++..-+
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg 405 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG 405 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecC
Confidence 99999999999999 999999985542110
Q ss_pred ------------------------EeecCC--------CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 194 ------------------------KFSGHP--------GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 194 ------------------------~~~~h~--------~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
.+..+. ....+++++|++..+++++ .|+.|++|.+....... ...
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~e--e~~ 482 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKE--EAK 482 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCcccc--eee
Confidence 000010 1236788899999999998 79999999998866431 222
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc---cCcee-EEeeccCCCcccccchhhhhhhc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN---TKATK-ILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
...|.. .++++.++ ||+.+|++|...+.+.+||..+.+.... +...+ .++. ++|+.+ .+++|
T Consensus 483 ~~~h~a-~iT~vayS-----pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a----WsP~n~----~vATG 548 (603)
T KOG0318|consen 483 LLEHRA-AITDVAYS-----PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA----WSPNNK----LVATG 548 (603)
T ss_pred eecccC-CceEEEEC-----CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE----eCCCce----EEEec
Confidence 334444 45666676 9999999999999999999988765211 11112 2222 678877 89999
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+.|..+.+|. +.. ....+.-...|...|+.+.|-.+..+ +|.+.|..+|+|++.
T Consensus 549 SlDt~Viiys-----v~k--P~~~i~iknAH~~gVn~v~wlde~tv--vSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 549 SLDTNVIIYS-----VKK--PAKHIIIKNAHLGGVNSVAWLDESTV--VSSGQDANIKVWNVT 602 (603)
T ss_pred cccceEEEEE-----ccC--hhhheEeccccccCceeEEEecCceE--EeccCcceeEEeccc
Confidence 9987554432 111 11113334468888999999988776 577779999999873
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.8e-30 Score=223.99 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=230.9
Q ss_pred CcccceeEeEECC---CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~---dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
+-|| +.++||| +|-+|++++.||.-.+-+-.+|..+.+|.+|.+.+.+..+..+
T Consensus 14 trpv--vdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n--------------------- 70 (334)
T KOG0278|consen 14 TRPV--VDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN--------------------- 70 (334)
T ss_pred Ccce--eEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch---------------------
Confidence 4588 6669986 8889999999999999999999999999999888876665544
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeecC
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRAS 158 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~ 158 (630)
....++++.|-+-++||.-+|..+..+ .|..-|.+++|+.|.++|++|+.+..+++||++..+ +...+.+|
T Consensus 71 ------a~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 71 ------ATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred ------hhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 344578888888999999999998777 588889999999999999999999999999998764 45568899
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.+.|..+.|....+.++++. ++|++||.+++..++++. ...+|+++.++++|+++.++ ..+.|.+||..+-...
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l- 218 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL- 218 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCceeEEeccccccce-
Confidence 99999999988777777755 999999999999998887 56789999999999987664 4778999999887643
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
.....+.. +..+... |+...+++|+.|+.++.||..+++.+..+
T Consensus 219 ----Ks~k~P~n-V~SASL~-----P~k~~fVaGged~~~~kfDy~TgeEi~~~-------------------------- 262 (334)
T KOG0278|consen 219 ----KSYKMPCN-VESASLH-----PKKEFFVAGGEDFKVYKFDYNTGEEIGSY-------------------------- 262 (334)
T ss_pred ----eeccCccc-ccccccc-----CCCceEEecCcceEEEEEeccCCceeeec--------------------------
Confidence 22222222 3344444 88899999999999999999988764321
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.++|.++|.|+.|||||... ++||.||++|+|-..
T Consensus 263 ----------------------------nkgh~gpVhcVrFSPdGE~y-AsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 263 ----------------------------NKGHFGPVHCVRFSPDGELY-ASGSEDGTIRLWQTT 297 (334)
T ss_pred ----------------------------ccCCCCceEEEEECCCCcee-eccCCCceEEEEEec
Confidence 12899999999999999999 999999999999764
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-29 Score=231.04 Aligned_cols=236 Identities=19% Similarity=0.322 Sum_probs=207.2
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.| ..++|+..|++||+|+.|=.+.+||..+ .+++....+|...+.++.|-|.
T Consensus 152 sv--~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~------------------------- 204 (406)
T KOG0295|consen 152 SV--FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL------------------------- 204 (406)
T ss_pred ce--eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec-------------------------
Confidence 46 4559999999999999998899999876 4556666666555544444443
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.+|++++.|.+|+.|++.+|-++.++. +|+..|..+..+.||..+++++.|.++++|-+.++++...++.|+.+|.
T Consensus 205 --gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 205 --GDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred --CCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence 7889999999999999999999997775 7999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC---------------CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 164 CMAVSSD---------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 164 ~l~~~p~---------------~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
|++|.|. +.++++++ ++|++||+.++.++.++.+|...|..++|+|.|+||++++ +|+++++
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktlrv 360 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTLRV 360 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcEEE
Confidence 9999863 24788888 8999999999999999999999999999999999999998 7999999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
||+.+.+ |......+..++.+..|. .+..++++|+-|..+++|..
T Consensus 361 wdl~~~~-----cmk~~~ah~hfvt~lDfh-----~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 361 WDLKNLQ-----CMKTLEAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccce-----eeeccCCCcceeEEEecC-----CCCceEEeccccceeeeeec
Confidence 9999987 666777788888999987 66679999999999999964
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.1e-29 Score=237.02 Aligned_cols=240 Identities=15% Similarity=0.206 Sum_probs=199.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++||.+ .|+++|.++++|+.+|.|++|+..- ..++.+. .|....+.++++.|.
T Consensus 138 Ds~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~-----------------ahh~eaIRdlafSpn------ 191 (464)
T KOG0284|consen 138 DSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQ-----------------AHHAEAIRDLAFSPN------ 191 (464)
T ss_pred cccceeE--EEccCCCEEEEcCCCceEEecccch-hhhHHhh-----------------HhhhhhhheeccCCC------
Confidence 4789666 9999999999999999999998753 3333333 333445556666654
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
...+++|+.||+|+|||....+....+ .+|.-.|.++.|+|....++++|.|..|++||.+++.|+.++..|+..|
T Consensus 192 ---DskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV 267 (464)
T KOG0284|consen 192 ---DSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV 267 (464)
T ss_pred ---CceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceE
Confidence 455999999999999999887765344 6899999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
..+.|+|++++|++++ ..+++||+++.+.+.++.+|...|+++.|+|-..-|++++..||.|..|.+...++. ..
T Consensus 268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~~ 344 (464)
T KOG0284|consen 268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---GE 344 (464)
T ss_pred EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc---cC
Confidence 9999999999999999 799999999888899999999999999999977666666657999999999855533 23
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
....|...+.. +.+. |=|..|++|+.|.++++|.-
T Consensus 345 i~~AHd~~iws-l~~h-----PlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 345 IPPAHDGEIWS-LAYH-----PLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCcccccceee-eecc-----ccceeEeecCCCcceeeecc
Confidence 33445555544 4444 89999999999999999963
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=243.60 Aligned_cols=316 Identities=15% Similarity=0.145 Sum_probs=219.1
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+| .|++-+|+.-+||.|..||.|+||+..++....++.+|...++.+.|...
T Consensus 67 ev--t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~-------------------------- 118 (888)
T KOG0306|consen 67 EV--TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKI-------------------------- 118 (888)
T ss_pred eE--EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEccc--------------------------
Confidence 56 44577788889999999999999999998888888877665554444433
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC---
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG--- 161 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--- 161 (630)
|..|++|+.|+.|.+||+-......++ .||...|+.+-|..+.++++++|.|+.|++||+.+..|..+.-.|.+.
T Consensus 119 -G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~ 196 (888)
T KOG0306|consen 119 -GTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA 196 (888)
T ss_pred -CceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence 888999999999999999887777666 489999999999987889999999999999999987776655444444
Q ss_pred --------------------------------------------------------------------------------
Q 006808 162 -------------------------------------------------------------------------------- 161 (630)
Q Consensus 162 -------------------------------------------------------------------------------- 161 (630)
T Consensus 197 l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~ 276 (888)
T KOG0306|consen 197 LVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK 276 (888)
T ss_pred EEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006808 162 -------------------------------------------------------------------------------- 161 (630)
Q Consensus 162 -------------------------------------------------------------------------------- 161 (630)
T Consensus 277 ~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~ 356 (888)
T KOG0306|consen 277 EEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK 356 (888)
T ss_pred HHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC
Confidence
Q ss_pred -------------------eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 162 -------------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 162 -------------------v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
|.+++++.+...+++|+ +.+++|+..+.++++++... .+.+..|-|.+++++++. ..
T Consensus 357 ~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~-k~ 433 (888)
T KOG0306|consen 357 TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGT-KN 433 (888)
T ss_pred CCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEec-cC
Confidence 44445554444444444 45555555555555554422 444455555555555444 35
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc------------
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN------------ 289 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------------ 289 (630)
|.+.+||+.+.... .....+...+..+... ||+..+++|+.|.+|++||..-......
T Consensus 434 Gel~vfdlaS~~l~-----Eti~AHdgaIWsi~~~-----pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 434 GELQVFDLASASLV-----ETIRAHDGAIWSISLS-----PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred CceEEEEeehhhhh-----hhhhccccceeeeeec-----CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 55555555444321 1122222333334444 8999999999999999999643222110
Q ss_pred ---cCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeec
Q 006808 290 ---TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM 366 (630)
Q Consensus 290 ---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~ 366 (630)
......++. ++|+++ +++++-.|+++++|-... ...|-++.||.=+|+|+.+|||+.++ +
T Consensus 504 tLel~ddvL~v~----~Spdgk----~LaVsLLdnTVkVyflDt--------lKFflsLYGHkLPV~smDIS~DSkli-v 566 (888)
T KOG0306|consen 504 TLELEDDVLCVS----VSPDGK----LLAVSLLDNTVKVYFLDT--------LKFFLSLYGHKLPVLSMDISPDSKLI-V 566 (888)
T ss_pred EEeccccEEEEE----EcCCCc----EEEEEeccCeEEEEEecc--------eeeeeeecccccceeEEeccCCcCeE-E
Confidence 111122333 789998 899999988776643222 22344667999999999999999999 9
Q ss_pred cccceeccccceec
Q 006808 367 SQSLLKSKRGRYVQ 380 (630)
Q Consensus 367 s~s~d~~~~~w~~~ 380 (630)
|||.|+++++|-+.
T Consensus 567 TgSADKnVKiWGLd 580 (888)
T KOG0306|consen 567 TGSADKNVKIWGLD 580 (888)
T ss_pred eccCCCceEEeccc
Confidence 99999999999764
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-27 Score=213.65 Aligned_cols=250 Identities=16% Similarity=0.189 Sum_probs=199.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+.| .++.|+++|.+|++++.|.++++||..+|++++++..+...+....|...
T Consensus 14 ~~~i--~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~------------------------ 67 (311)
T KOG1446|consen 14 NGKI--NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH------------------------ 67 (311)
T ss_pred CCce--eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC------------------------
Confidence 4577 55599999999999999999999999999999988766555544444332
Q ss_pred ccCCcEEEEEeC--CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
...++.++. |.+|+..++.+++.+ +++.||...|++++.+|-+..|++++.|++|++||++..++...+.....
T Consensus 68 ---~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 68 ---SNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred ---CceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 333455554 677999999999998 55679999999999999999999999999999999999988877775555
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCC--ceeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~--~~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+ .++|.|.|-++|++. +.|++||++.. .+..+|. +.....+.+.|||+|++++.+. ..+.+++.|.-.+.
T Consensus 144 p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 144 P--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGT 220 (311)
T ss_pred c--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCc
Confidence 4 478999999999998 48999999874 3455554 2356789999999999999987 58899999999887
Q ss_pred cccceeeeeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 234 KQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.. ..+..... ......++|. ||++++++|+.||+|++|++++|..+......
T Consensus 221 ~~---~tfs~~~~~~~~~~~a~ft-----Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 221 VK---STFSGYPNAGNLPLSATFT-----PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred Ee---eeEeeccCCCCcceeEEEC-----CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 54 33333222 2233455665 99999999999999999999999888766653
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.6e-28 Score=243.02 Aligned_cols=271 Identities=18% Similarity=0.252 Sum_probs=222.8
Q ss_pred EE-CCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SF-SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~f-s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
+| .|+.++||.+++.+.+|+|++.+..+. .+.+|...+.++. .|.. +.+|+
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~-----------------~~~~----------g~lla 381 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLD-----------------VWSS----------GDLLA 381 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeee-----------------eccc----------CcEEE
Confidence 54 677899999999999999999888776 5665555444322 1222 67899
Q ss_pred EEeCCCeEEEEEccCCeee---EEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCce---------eEEeec
Q 006808 91 LGTGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSL---------LGKFRA 157 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~---~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~---------~~~~~~ 157 (630)
+|+.|.++++|.+..+... .....+|+..|.+++++..+ .+|+++|.|+++++|++...+. ..+...
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 9999999999988544321 23336899999999997754 4689999999999999976221 113356
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|...|+|++++|+.+++|+|+ .+.++|++...+...++.||...|.++.|+|..+.+++++ .|++|+||.+.+..
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~fS-- 538 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTFS-- 538 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccce--
Confidence 889999999999999999999 8999999999999999999999999999999999999887 69999999999876
Q ss_pred cceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhh
Q 006808 236 SASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 236 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (630)
|+.++. |...+..+.+. .+|..|++++.||.|++|++++...+++.
T Consensus 539 ---ClkT~eGH~~aVlra~F~------~~~~qliS~~adGliKlWnikt~eC~~tl------------------------ 585 (775)
T KOG0319|consen 539 ---CLKTFEGHTSAVLRASFI------RNGKQLISAGADGLIKLWNIKTNECEMTL------------------------ 585 (775)
T ss_pred ---eeeeecCccceeEeeeee------eCCcEEEeccCCCcEEEEeccchhhhhhh------------------------
Confidence 777777 66667776666 58899999999999999999877664332
Q ss_pred hhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
-.|.+.|+.++.+|++..+ +||+.|+.+.+|.
T Consensus 586 -------------------------------D~H~DrvWaL~~~~~~~~~-~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 586 -------------------------------DAHNDRVWALSVSPLLDMF-VTGGGDGRIIFWK 617 (775)
T ss_pred -------------------------------hhccceeEEEeecCcccee-EecCCCeEEEEee
Confidence 2788899999999999988 9999999999995
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.5e-28 Score=245.46 Aligned_cols=251 Identities=16% Similarity=0.228 Sum_probs=215.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
|+.|+.+ +|+|...+++++-..|.|.+||..=+.++..|..|.+++..+.|.|.
T Consensus 9 SsRvKgl--sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~------------------------ 62 (1202)
T KOG0292|consen 9 SSRVKGL--SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT------------------------ 62 (1202)
T ss_pred cccccce--ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC------------------------
Confidence 5677777 99999999999999999999999999999999999999998888887
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.++++|+.|..|++|+..+.+++.++. ||-..|+.+.|++.-.+|+++|.|.+|+||+..+++++..+.+|...|
T Consensus 63 ---qplFVSGGDDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV 138 (1202)
T KOG0292|consen 63 ---QPLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV 138 (1202)
T ss_pred ---CCeEEecCCccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence 7789999999999999999999998876 899999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCc-----------------------------eeeEeecCCCCeEEEEEeeCC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------------------------KMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-----------------------------~~~~~~~h~~~v~~l~~sp~~ 211 (630)
.|..|+|....+++++ .+|++||+..-+ ....+.||...|+-++|+|.-
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl 218 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL 218 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence 9999999999999999 899999984210 012356899999999999999
Q ss_pred cEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..+++++ +|+.|++|.+...+.- .+-+...+...++++.|. |...+|++.++|+.|+|||+...+.+.++.
T Consensus 219 pliVSG~-DDRqVKlWrmnetKaW---EvDtcrgH~nnVssvlfh-----p~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 219 PLIVSGA-DDRQVKLWRMNETKAW---EVDTCRGHYNNVSSVLFH-----PHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceEEecC-CcceeeEEEeccccce---eehhhhcccCCcceEEec-----CccceeEecCCCccEEEEecccccceeeee
Confidence 9998887 7999999998876532 122222333344555555 888999999999999999998877777664
Q ss_pred c
Q 006808 292 A 292 (630)
Q Consensus 292 ~ 292 (630)
.
T Consensus 290 r 290 (1202)
T KOG0292|consen 290 R 290 (1202)
T ss_pred c
Confidence 3
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.3e-27 Score=209.93 Aligned_cols=277 Identities=13% Similarity=0.118 Sum_probs=214.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+.+|++|+.|....+|-..+|+.+.++ .||++.|+|+....+.+++++|+.|.++++||+.+|+++.+++ ...+|..+
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~ 99 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRV 99 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEE
Confidence 899999999999999999999998776 5899999999999999999999999999999999999999998 46789999
Q ss_pred EEccCCCEEEEeC-------CeEEEEECC-------CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 166 AVSSDGKMLATAA-------GQLKTFNCS-------DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 166 ~~~p~~~~l~~~~-------g~i~lwd~~-------~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.|+++|++++.+. +.|.++|++ +..++..+..+...++.+.|.|-+++++++. .||.|.+||+++
T Consensus 100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~ 178 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-EDGSISIYDART 178 (327)
T ss_pred eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-CCCcEEEEEccc
Confidence 9999999887765 589999998 4456777888889999999999999999988 699999999999
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchh
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
+... +.....+...+.-+.++ |+..++++++.|.+.++||..+...+++.....+.-+ .. ++|...
T Consensus 179 g~~~----v~s~~~h~~~Ind~q~s-----~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~-aa-isP~~d--- 244 (327)
T KOG0643|consen 179 GKEL----VDSDEEHSSKINDLQFS-----RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNT-AA-ISPLLD--- 244 (327)
T ss_pred Ccee----eechhhhcccccccccc-----CCcceEEecccCccceeeeccceeeEEEeeecccccc-ee-cccccc---
Confidence 8643 22323333355566666 9999999999999999999999988877654333222 22 234322
Q ss_pred hhhhhcccccc-ccCCceeEE----EEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 312 AAIFAAKLQDI-VKPASVHTF----VAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 312 ~~i~~~~~d~~-~~~~~~~~~----~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
..|+.|+.+.. +..-..+.- -.|.......+..+++|.+++++++|+|||+.. +||++|+-+|+.-+.
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY-sSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY-SSGGEDGYVRLHHFD 317 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc-ccCCCCceEEEEEec
Confidence 13344433321 000000000 001123344566888999999999999999999 999999999998664
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=225.32 Aligned_cols=236 Identities=15% Similarity=0.298 Sum_probs=194.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++.| +|+.|. .+.+++||.|.+|+|||+++|+++.++-+|...+..+.|+
T Consensus 237 tGSV--LCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-------------------------- 286 (499)
T KOG0281|consen 237 TGSV--LCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-------------------------- 286 (499)
T ss_pred CCcE--Eeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--------------------------
Confidence 5677 866764 5599999999999999999999999988777666555444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+.++++++.|.++.+||+..... ..+++.||...|+.+.|+ .+++++++.|.+|++|++.++++++++.+|..
T Consensus 287 ---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 287 ---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred ---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccc
Confidence 66899999999999999976542 345567999999999994 56999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc---
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--- 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~--- 235 (630)
.|.|+.+ .++++++|+ .+|++||+..|.+++.+.||..-|.++.|. .+.+++++ .||+|++||+..+...
T Consensus 362 GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-YDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 362 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-YDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-ccceEEEEecccccCCccc
Confidence 9998877 478999998 899999999999999999999999999996 57788888 6999999999876533
Q ss_pred -cceeeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 236 -SASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 236 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
...|...+ .|.+.+.... | |...|++++.|.+|.|||..++-.
T Consensus 437 ~~~~Cl~~lv~hsgRVFrLQ-F-------D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFRLQ-F-------DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccchHHHhhhhccceeEEEe-e-------cceEEEeccCCCeEEEEEcCCCCc
Confidence 12233333 2444444433 3 568899999999999999877644
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=219.41 Aligned_cols=242 Identities=17% Similarity=0.225 Sum_probs=204.9
Q ss_pred ccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCc
Q 006808 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM 140 (630)
Q Consensus 61 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 140 (630)
.||++ -+.|++..|. +.++++|+.|++++|||+.+|+...++ .||-..|..+++++-..++++++.|+.
T Consensus 148 ~gHlg-WVr~vavdP~---------n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 148 SGHLG-WVRSVAVDPG---------NEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred hhccc-eEEEEeeCCC---------ceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEecCCCe
Confidence 35654 4556666554 789999999999999999999998666 489999999999999999999999999
Q ss_pred EEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 141 VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 141 v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
|+.||+...+.++.+.+|-..|+|++.+|.-..|++|+ .++++||+++...+..+.||..+|.++.+.|....+++++
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 99999999999999999999999999999999999998 7999999999999999999999999999999888999987
Q ss_pred eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee
Q 006808 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (630)
.|++|++||++.++.. ..+.|+...+.+++.. |....+++++.| .|+-|++..|..+..
T Consensus 297 -~D~tvrlWDl~agkt~-----~tlt~hkksvral~lh-----P~e~~fASas~d-nik~w~~p~g~f~~n--------- 355 (460)
T KOG0285|consen 297 -HDSTVRLWDLRAGKTM-----ITLTHHKKSVRALCLH-----PKENLFASASPD-NIKQWKLPEGEFLQN--------- 355 (460)
T ss_pred -CCceEEEeeeccCcee-----EeeecccceeeEEecC-----CchhhhhccCCc-cceeccCCccchhhc---------
Confidence 6999999999998743 3445667777788877 888888888886 678888765544322
Q ss_pred ccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+.+|..-+++++...||-+ ++|+..+++.+|+
T Consensus 356 ----------------------------------------------lsgh~~iintl~~nsD~v~--~~G~dng~~~fwd 387 (460)
T KOG0285|consen 356 ----------------------------------------------LSGHNAIINTLSVNSDGVL--VSGGDNGSIMFWD 387 (460)
T ss_pred ----------------------------------------------cccccceeeeeeeccCceE--EEcCCceEEEEEe
Confidence 2356666777877778765 6888899999998
Q ss_pred eccc
Q 006808 379 VQNR 382 (630)
Q Consensus 379 ~~~~ 382 (630)
-+++
T Consensus 388 wksg 391 (460)
T KOG0285|consen 388 WKSG 391 (460)
T ss_pred cCcC
Confidence 7654
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.5e-27 Score=243.19 Aligned_cols=237 Identities=24% Similarity=0.379 Sum_probs=197.7
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEEC-CCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.|+++ +|+|+|+++++|+.|++|+|||+ ..+..+.++++|...+.++.|++.
T Consensus 205 ~v~~~--~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------------------------- 257 (456)
T KOG0266|consen 205 GVSDV--AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------------------------- 257 (456)
T ss_pred ceeee--EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC-------------------------
Confidence 56444 99999999999999999999999 666899999988877776666665
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEeecCCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKG 161 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~ 161 (630)
++++++|+.|++|+|||+.++++...+ .+|..+|++++|+++|++|++++.|+.|++||+.++. +...+..+...
T Consensus 258 --g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 258 --GNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred --CCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence 788999999999999999999988666 5899999999999999999999999999999999999 56777766655
Q ss_pred --eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCC---eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 162 --ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA---VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 162 --v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~---v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
++++.|+|++.+++++. +.+++||+..+..+..+.+|... +.+..+++.+.++++++ .|+.|++|++.++..
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGGI 413 (456)
T ss_pred CceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccch
Confidence 99999999999999998 69999999999999999999875 33445577899998887 799999999998653
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYG 281 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~ 281 (630)
. +.. ..|....+....++ |...++++++ .|+.+++|..
T Consensus 414 ~---~~l-~~h~~~~~~~~~~~-----~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 414 L---QRL-EGHSKAAVSDLSSH-----PTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred h---hhh-cCCCCCceeccccC-----CCcCeeeecCcCCCceEEEecC
Confidence 3 222 22313333444444 7889999988 6889999975
No 49
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.1e-27 Score=238.94 Aligned_cols=259 Identities=15% Similarity=0.198 Sum_probs=191.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE---------------------------Eeccc-------cc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---------------------------EFADI-------AS 48 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~---------------------------~~~~~-------~~ 48 (630)
.+.| +++.||+||+|||+||.||.|+||.+...+... ...+. ..
T Consensus 267 ~gaI--w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 267 KGAI--WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred CCcE--EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4678 888999999999999999999999886511100 00000 00
Q ss_pred ------ccccccccccc---cccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC
Q 006808 49 ------TETTSLYGNRL---EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG 119 (630)
Q Consensus 49 ------~~~~~~~s~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~ 119 (630)
......|++.. ..||.. ++..+.|.. +++|++++.|.+|++|++....++..+ .|...
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F--~Hndf 411 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF--SHNDF 411 (712)
T ss_pred CccccCCCccccccccchhhhhccch-hheeccccc----------CCeeEeccccccEEeecCCCcceeeEE--ecCCe
Confidence 00111222211 135543 677788865 789999999999999999999999777 59999
Q ss_pred EEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee
Q 006808 120 VSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS 196 (630)
Q Consensus 120 v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~ 196 (630)
|+|++|+| |.++|++|+.||.|+||++...+.+.-.. ...-|++++|.|+|++.++|+ |.+++|+....+....+.
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99999999 88899999999999999998776654444 457899999999999999999 999999998877655442
Q ss_pred c--C------CCCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEE
Q 006808 197 G--H------PGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (630)
Q Consensus 197 ~--h------~~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (630)
- | ...|+++.|.|... .+++++ .|..|+|+|.+..... +.+.-.+.......+.|. .||++|
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~Asfs-----~Dgk~I 561 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLV---HKFKGFRNTSSQISASFS-----SDGKHI 561 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhh---hhhcccccCCcceeeeEc-----cCCCEE
Confidence 1 1 22799999987544 355555 5999999999776544 333322333333344454 799999
Q ss_pred EEEecCCcEEEEEcCCccc
Q 006808 268 LAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 268 ~s~s~dg~i~iwd~~~~~~ 286 (630)
++++.|..|+||+......
T Consensus 562 Vs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred EEeecCceEEEEeCCCCcc
Confidence 9999999999999865543
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.6e-26 Score=201.23 Aligned_cols=270 Identities=14% Similarity=0.215 Sum_probs=202.1
Q ss_pred eEeEECCC-CCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 9 ILTSFSPA-LDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 9 ~~~~fs~d-g~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
..++|+|- |..||+||.|+.||||++..+. +...+. .+| ...+..++|.|.
T Consensus 18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld----------------~~h-krsVRsvAwsp~-------- 72 (312)
T KOG0645|consen 18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD----------------DGH-KRSVRSVAWSPH-------- 72 (312)
T ss_pred EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc----------------ccc-hheeeeeeecCC--------
Confidence 55699998 9999999999999999987533 332222 133 235566777665
Q ss_pred CCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceeEEeecCC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG---SLLGKFRAST 159 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~ 159 (630)
+++|++|+.|.++.||.-..++ ++ ..+.||...|.|++|+++|++|++|+.|+.|.||.+..+ .+...++.|.
T Consensus 73 -g~~La~aSFD~t~~Iw~k~~~efecv-~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 73 -GRYLASASFDATVVIWKKEDGEFECV-ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred -CcEEEEeeccceEEEeecCCCceeEE-eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 8899999999999999877554 44 445799999999999999999999999999999998743 6788899999
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECC---CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCS---DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~---~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
..|..+.|+|...+|++++ ++|++|.-. ...+.+++.+|...|.+++|+|.|..|++++ +|++++||.....-
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s-dD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS-DDGTVSIWRLYTDL- 228 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec-CCcceEeeeeccCc-
Confidence 9999999999999999999 899999765 3468899999999999999999999999887 79999999876431
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc------cccc-ccCceeEEeeccCCCcccc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI------EELR-NTKATKILSSSEDVNSKSQ 307 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~-~~~~~~~~~~~~~~~~~~~ 307 (630)
...|......+.+. ...|++++.|+.|++|.-... +.+. ....+...+.+.. +.|..
T Consensus 229 -------~~~~sr~~Y~v~W~--------~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~-w~p~~ 292 (312)
T KOG0645|consen 229 -------SGMHSRALYDVPWD--------NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQ-WNPKV 292 (312)
T ss_pred -------chhcccceEeeeec--------ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEE-EcCCC
Confidence 22233333333332 368999999999999975432 1111 1111111222111 34432
Q ss_pred cchhhhhhhccccccccCC
Q 006808 308 KSATAAIFAAKLQDIVKPA 326 (630)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~ 326 (630)
. ..+++++.||.++++
T Consensus 293 ~---~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 293 S---NRLASGGDDGIVNFW 308 (312)
T ss_pred C---CceeecCCCceEEEE
Confidence 2 278888888877653
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=8.9e-28 Score=216.58 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=210.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+|+|+- +|||||.++|+||.|..|+|.|+...--.....
T Consensus 112 K~~cR~a--afs~DG~lvATGsaD~SIKildvermlaks~~~-------------------------------------- 151 (430)
T KOG0640|consen 112 KSPCRAA--AFSPDGSLVATGSADASIKILDVERMLAKSKPK-------------------------------------- 151 (430)
T ss_pred ccceeee--eeCCCCcEEEccCCcceEEEeehhhhhhhcchh--------------------------------------
Confidence 3577444 999999999999999999999986321110000
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec--CCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~ 160 (630)
-+..+. .+.+-.+.+.+..|...|+++.|+|....|++|+.|++|++||+......+.++. ...
T Consensus 152 -----em~~~~---------~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~ 217 (430)
T KOG0640|consen 152 -----EMISGD---------TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE 217 (430)
T ss_pred -----hhccCC---------cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccc
Confidence 000000 0111122233346999999999999999999999999999999875433333322 345
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe---ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+|.++.|+|.|.+|++|. .++++||+.+.++.... .+|++.|+++.+++.++..++++ .||.|++||--+++..
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNRCV 296 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHHHH
Confidence 899999999999999998 69999999999876554 47899999999999999888877 7999999998777633
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee----EEeeccCCCcccccchh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK----ILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 311 (630)
..+...|.+..+....|. .+|++|++.+.|..+++|.+.+++.+....... .......+|.....
T Consensus 297 ---~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd--- 365 (430)
T KOG0640|consen 297 ---RTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED--- 365 (430)
T ss_pred ---HHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc---
Confidence 334445788888888887 899999999999999999999998887654331 11111111211111
Q ss_pred hhhhhccccccccCCceeEEEEEcCccC-ceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLK-PSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+++.-... .+. +..|..... ..----.+|.+.+.++.-||.+..+ ++||.|...|+|-.
T Consensus 366 -yVl~pDEa------s~s-lcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F-mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 366 -YVLFPDEA------SNS-LCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF-MTCSDDFRARFWYR 425 (430)
T ss_pred -eEEccccc------cCc-eeeccccchhhhhhcccCCCCCceEEEeCCCCCce-eeecccceeeeeee
Confidence 22111110 000 111111111 1111123799999999999999998 99999999999965
No 52
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=202.78 Aligned_cols=246 Identities=15% Similarity=0.270 Sum_probs=200.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++|.++ +|+.+|..||+|+.|++++||++........+. .+||.+ .+-.++|.+.+
T Consensus 20 ~~~v~Sv--~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~---------------~~gh~~-svdql~w~~~~----- 76 (313)
T KOG1407|consen 20 VQKVHSV--AWNCDGTKLASGSFDKTVSVWNLERDRFRKELV---------------YRGHTD-SVDQLCWDPKH----- 76 (313)
T ss_pred hhcceEE--EEcccCceeeecccCCceEEEEecchhhhhhhc---------------ccCCCc-chhhheeCCCC-----
Confidence 3567555 999999999999999999999998775544332 123322 34456777766
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
..++++++++.+|++||++.+++...+. ..+.-.-+.|+|+|++++.++.|..|...|.++.+.....+ ....+
T Consensus 77 ---~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ 150 (313)
T KOG1407|consen 77 ---PDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEV 150 (313)
T ss_pred ---CcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cccee
Confidence 5679999999999999999999987764 44556678999999999999999999999999888877655 34467
Q ss_pred EEEEEccCCCEEE-EeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLA-TAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~-~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.-++|+.++.+++ +.+ |.|.|.....-+++.+++.|+....||.|+|+|+||++++ .|-.+.+||+...- |.
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELi-----C~ 224 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELI-----CE 224 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhh-----hh
Confidence 7788887666544 445 8999999999999999999999999999999999999998 59999999997753 55
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
..+......++.+.|+ .+|++||++++|-.|-|=++++|..+.
T Consensus 225 R~isRldwpVRTlSFS-----~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFS-----HDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred eeeccccCceEEEEec-----cCcceeeccCccceEEeEecccCCeEE
Confidence 5666677778888887 899999999999999888888887654
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.8e-27 Score=204.49 Aligned_cols=283 Identities=13% Similarity=0.151 Sum_probs=215.9
Q ss_pred eeEeEECCC-CCEEEEe--e-----CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 8 DILTSFSPA-LDYFAIC--S-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 8 ~~~~~fs~d-g~~las~--s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
..++.|||= .++||.+ . ..|++.|.++..++-+.++... ........++|++..
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~----------------d~~D~LfdV~Wse~~-- 72 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY----------------DTEDGLFDVAWSENH-- 72 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee----------------ecccceeEeeecCCC--
Confidence 345699992 2333332 1 3688999998655544444311 112245578888776
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
.+.++++++||++++||..........++.|...|.++.|++ .+..++++|.|++|++|+...++.+++|.+|
T Consensus 73 ------e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 73 ------ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred ------cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 778999999999999997665555566678999999999998 5556888999999999999999999999999
Q ss_pred CCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 159 ~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
...|+..+|+| .+..+++++ +++++||++.......+..|...|.++.|+.-..++++++.-|+.|++||++.-+..
T Consensus 147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 99999999999 567888887 899999998755445588999999999999866655555557999999999987744
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCC-CCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (630)
++.+..+...++.+.|+ |. ...|++++.|-+++|||...+....
T Consensus 227 ----l~eL~gh~~AVRkvk~S-----ph~~~lLaSasYDmT~riw~~~~~ds~~-------------------------- 271 (311)
T KOG0277|consen 227 ----LFELNGHGLAVRKVKFS-----PHHASLLASASYDMTVRIWDPERQDSAI-------------------------- 271 (311)
T ss_pred ----ceeecCCceEEEEEecC-----cchhhHhhhccccceEEecccccchhhh--------------------------
Confidence 55666677777777776 54 4678899999999999975332211
Q ss_pred hhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCC-cceeeccccceeccccce
Q 006808 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD-GVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~~s~s~d~~~~~w~ 378 (630)
+++.-|+..|..+.||+- +.++ ++.++|.++++|+
T Consensus 272 ----------------------------e~~~~HtEFv~g~Dws~~~~~~v-As~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 272 ----------------------------ETVDHHTEFVCGLDWSLFDPGQV-ASTGWDELLYVWN 307 (311)
T ss_pred ----------------------------hhhhccceEEeccccccccCcee-eecccccceeeec
Confidence 122257777888888874 4466 9999999999996
No 54
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9.8e-26 Score=233.59 Aligned_cols=255 Identities=15% Similarity=0.151 Sum_probs=194.7
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.+++++..+++++.+.....|+...+..+..+.... ... -.+.+..||. ..+.++.|.|.+ +.+|++
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-~~~---~~~~~l~GH~-~~V~~v~fsP~d--------~~~LaS 93 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-KLA---SNPPILLGQE-GPIIDVAFNPFD--------PQKLFT 93 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccc-cCC---CCCceEeCCC-CCEEEEEEcCCC--------CCEEEE
Confidence 677888888888888888999876654332222111 000 0111233664 478899999865 678999
Q ss_pred EeCCCeEEEEEccCCe-------eeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 92 GTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~-------~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
|+.||.|++||+.++. .+ ..+.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+..|...|.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l-~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPI-VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcce-EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 9999999999997653 23 2345899999999999975 6899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCC-eEEEEEeeCCcEEEEEee---CCCeEEEEEcCCCccccc
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSA 237 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~~~~~---~d~~i~vwd~~~~~~~~~ 237 (630)
+++|+|+|.+|++++ +.|++||+++++.+.++.+|.+. +..+.|.+++..+++++. .|+.|++||++.....
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-- 250 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-- 250 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc--
Confidence 999999999999998 89999999999999899889765 456789998888887652 4789999999875432
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCccccc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR 288 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~ 288 (630)
...... +....+....|+ +++.+|++++ .||.|++||+.++..+.
T Consensus 251 ~~~~~~-d~~~~~~~~~~d-----~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 251 YSTVDL-DQSSALFIPFFD-----EDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred eeEecc-CCCCceEEEEEc-----CCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 111111 222334445565 8999998887 49999999998876543
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.9e-27 Score=227.08 Aligned_cols=243 Identities=20% Similarity=0.260 Sum_probs=194.4
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
.++++.|+|.. +.+|++|+.|+.|+||++.. +.++.+ +.+|..+|.+++|+++|..|+++|.|+.+++||
T Consensus 216 gvsai~~fp~~--------~hLlLS~gmD~~vklW~vy~~~~~lrt-f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 216 GVSAIQWFPKK--------GHLLLSGGMDGLVKLWNVYDDRRCLRT-FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccchhhhccce--------eeEEEecCCCceEEEEEEecCcceehh-hhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 56677777754 78999999999999999987 566644 468999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 146 PLTGSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
+++|+++..|.. ...++|+.|+|++ +.+++|+ +.|+.||+++++.++.+..|-+.|..+.|-++|+++++++ +|+
T Consensus 287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS-Ddk 364 (503)
T KOG0282|consen 287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS-DDK 364 (503)
T ss_pred cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec-cCc
Confidence 999999999984 5578999999988 6666666 8999999999999999999999999999999999999987 799
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCC
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (630)
.++||+.+.+-.. .+..........++... |++.++++-+.|+.|.+|.+...-.+...
T Consensus 365 s~riWe~~~~v~i----k~i~~~~~hsmP~~~~~-----P~~~~~~aQs~dN~i~ifs~~~~~r~nkk------------ 423 (503)
T KOG0282|consen 365 SVRIWENRIPVPI----KNIADPEMHTMPCLTLH-----PNGKWFAAQSMDNYIAIFSTVPPFRLNKK------------ 423 (503)
T ss_pred cEEEEEcCCCccc----hhhcchhhccCcceecC-----CCCCeehhhccCceEEEEecccccccCHh------------
Confidence 9999999887643 12222233333444444 99999999999999999986332211100
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.++-|... .+.-..+.|||||.+| +||+.||.+.+|+-.
T Consensus 424 ----------K~feGh~v----------------------------aGys~~v~fSpDG~~l-~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 424 ----------KRFEGHSV----------------------------AGYSCQVDFSPDGRTL-CSGDSDGKVNFWDWK 462 (503)
T ss_pred ----------hhhcceec----------------------------cCceeeEEEcCCCCeE-EeecCCccEEEeech
Confidence 11111110 1124678999999999 999999999999875
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=198.78 Aligned_cols=264 Identities=14% Similarity=0.127 Sum_probs=211.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+++.++|+.+.+|++|++..+.++.++ .+|...|..++.+.|+..|++|+.|..|.+||+.+|+..+.|.+|.+.|..+
T Consensus 29 GnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 29 GNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV 107 (307)
T ss_pred CCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence 889999999999999999999999777 4899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCC--ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+|+.+...+++|+ .++++||.++. ++++.+......|.++..+ +..+++++ -||+++.||++.++..
T Consensus 108 ~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS-~DGtvRtydiR~G~l~------ 178 (307)
T KOG0316|consen 108 RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS-VDGTVRTYDIRKGTLS------ 178 (307)
T ss_pred EecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec-cCCcEEEEEeecceee------
Confidence 9999999999999 89999999875 5788887778889998876 44566555 7999999999998643
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEE---eeccCCCcccccchhhhhhhcc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL---SSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
...-+..+++..|+ ++++..++++.|+.+++.|-.+|+.++..+..+.. .-|. +..... .+++|+
T Consensus 179 -sDy~g~pit~vs~s-----~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~--l~qsdt----hV~sgS 246 (307)
T KOG0316|consen 179 -SDYFGHPITSVSFS-----KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC--LNQSDT----HVFSGS 246 (307)
T ss_pred -hhhcCCcceeEEec-----CCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee--ecccce----eEEecc
Confidence 23344567788887 99999999999999999999999998876665422 1111 233332 789999
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCC-cEEEeecCCcceeeccccceeccccceecc
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE-DINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.||.++.|+ ......+..+..|... |..+.++|.-.-+ +++. ++....|...+
T Consensus 247 EDG~Vy~wd--------Lvd~~~~sk~~~~~~v~v~dl~~hp~~~~f-~~A~-~~~~~~~~~~~ 300 (307)
T KOG0316|consen 247 EDGKVYFWD--------LVDETQISKLSVVSTVIVTDLSCHPTMDDF-ITAT-GHGDLFWYQEN 300 (307)
T ss_pred CCceEEEEE--------eccceeeeeeccCCceeEEeeecccCccce-eEec-CCceeceeehh
Confidence 988777654 2223334455566666 7899999987655 4444 56666776543
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=7.2e-26 Score=203.86 Aligned_cols=237 Identities=14% Similarity=0.213 Sum_probs=200.2
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+++| +-+.|.+|++.+++||.|.+|+.||..+|+++..+++|..-++.+. |.
T Consensus 89 HsgAV--M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~----------------------- 141 (338)
T KOG0265|consen 89 HSGAV--MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS----------------------- 141 (338)
T ss_pred cccee--EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC--cc-----------------------
Confidence 36788 5569999999999999999999999999999999987776555332 11
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+.+..++.+++.||++++||+++...+.++. ....++++.|..++..+++|+-|+.|++||++.+....++.+|..+
T Consensus 142 -rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 142 -RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred -ccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 1136678899999999999999988876653 4578999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCC----ceeeEeecCCC----CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPG----AVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~----~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
|+.+..+|+|.++.+-+ .++++||++.. +++..+.+|.. ....++|+|+++++-+++ .|+.+++||...
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags-~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-ADRFVYVWDTTS 297 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc-ccceEEEeeccc
Confidence 99999999999999988 89999999753 45777777643 356779999999887776 599999999887
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
.. +++.++.+...+..+.|. |....|.+++.|.+|++=
T Consensus 298 r~-----~lyklpGh~gsvn~~~Fh-----p~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 298 RR-----ILYKLPGHYGSVNEVDFH-----PTEPIILSCSSDKTIYLG 335 (338)
T ss_pred cc-----EEEEcCCcceeEEEeeec-----CCCcEEEEeccCceeEee
Confidence 55 566777666677777777 899999999999999863
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-26 Score=225.28 Aligned_cols=236 Identities=14% Similarity=0.169 Sum_probs=195.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.-|||+- .|-+--+++++|+.|..||||+..+++.++.|..|...+.++...|.
T Consensus 55 ~~PvRa~--kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt------------------------ 108 (794)
T KOG0276|consen 55 EVPVRAA--KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT------------------------ 108 (794)
T ss_pred ccchhhh--eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCC------------------------
Confidence 3578555 89888899999999999999999999999999988877766655555
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
..++++++.|-.|++||...+-.....+.||...|.+++|+| |.+.|++++-|++|++|.+.+..+..++.+|...
T Consensus 109 ---~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG 185 (794)
T KOG0276|consen 109 ---LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG 185 (794)
T ss_pred ---CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC
Confidence 557899999999999999988666677789999999999999 7778999999999999999999999999999999
Q ss_pred eEEEEEccCC--CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 162 ISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 162 v~~l~~~p~~--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
|.|+++-|.| .+|++|+ .+|+|||.++..|++++.||...|..+.|+|.-..+++++ .||+++||+..+-+..
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs-EDGTvriWhs~Ty~lE-- 262 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS-EDGTVRIWNSKTYKLE-- 262 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec-CCccEEEecCcceehh--
Confidence 9999998844 6899998 7999999999999999999999999999999999988887 8999999998886644
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
..+..+ -..+ .++... +.+..++.|...|.+.+
T Consensus 263 -~tLn~g-leRv-W~I~~~-----k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 263 -KTLNYG-LERV-WCIAAH-----KGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -hhhhcC-CceE-EEEeec-----CCCCeEEEeccCCcEEE
Confidence 122221 1222 222222 45566777766665543
No 59
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=9.2e-26 Score=212.53 Aligned_cols=278 Identities=18% Similarity=0.255 Sum_probs=221.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++...|....+++|+.|..+.++|..+++.+..++||.-.+..+.|++. ...
T Consensus 223 ~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~---------------------------~~~ 275 (506)
T KOG0289|consen 223 TALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD---------------------------LDT 275 (506)
T ss_pred eEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc---------------------------hhh
Confidence 33355666689999999999999999999999999988776666666555 667
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC--CCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~l~ 166 (630)
+++++.+-.|+||........ .....|..+|+.+..+|.|.||++++.||+..+.|++++.++...... .-.+++.+
T Consensus 276 v~~aSad~~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred eeecCCcceEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 899999999999999877755 445689999999999999999999999999999999999988776643 23689999
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
|+|||.++.+|. |.+++||+.++..+..|++|+++|..++|+.+|-||++++ +|+.|++||++..+.. ..+.+.
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~---kt~~l~ 430 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNF---KTIQLD 430 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhccc---ceeecc
Confidence 999999999998 8999999999999999999999999999999999999988 6999999999987744 334443
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccccccc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 324 (630)
... .+..+.|. +.|.+|+.++.|=+|++++-.+. .++
T Consensus 431 ~~~-~v~s~~fD-----~SGt~L~~~g~~l~Vy~~~k~~k---------------------~W~---------------- 467 (506)
T KOG0289|consen 431 EKK-EVNSLSFD-----QSGTYLGIAGSDLQVYICKKKTK---------------------SWT---------------- 467 (506)
T ss_pred ccc-cceeEEEc-----CCCCeEEeecceeEEEEEecccc---------------------cce----------------
Confidence 333 45566776 88999999977766666552211 111
Q ss_pred CCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 325 PASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.+..+..|.+...++.|....+++ +++|.|..+++..
T Consensus 468 ----------------~~~~~~~~sg~st~v~Fg~~aq~l-~s~smd~~l~~~a 504 (506)
T KOG0289|consen 468 ----------------EIKELADHSGLSTGVRFGEHAQYL-ASTSMDAILRLYA 504 (506)
T ss_pred ----------------eeehhhhcccccceeeecccceEE-eeccchhheEEee
Confidence 011222455566778888888888 8888888876643
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=6.9e-26 Score=210.09 Aligned_cols=271 Identities=14% Similarity=0.181 Sum_probs=205.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+.++++|++||.++|||. .|+++..+.+|.+++. .++|...++. ...+++++.|.
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik------------------~v~~v~~n~~------~~~fvsas~Dq 169 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIK------------------SVAWVIKNSS------SCLFVSASMDQ 169 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCccee------------------eeEEEecCCc------cceEEEecCCc
Confidence 689999999999999997 5888888887665443 4566555443 45799999999
Q ss_pred eEEEEEccCCeeeEE---ccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-------------------------C
Q 006808 97 DVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-------------------------T 148 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~---~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~-------------------------~ 148 (630)
++++|....+..... ...||...|.++...++|..+++|+.|.++++|+.. +
T Consensus 170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 999999887764322 224899999999999999999999999999999932 1
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
+.++.++.+|..+|.++.|++ ...+++++ .+|+.||+.++..+.++.+ ...++++.++|..+.|++++ .|+.|++
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs-sdr~irl 326 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS-SDRHIRL 326 (423)
T ss_pred cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC-CCCceee
Confidence 235667889999999999998 56777777 8999999999998888774 56789999999998888887 5999999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc-cccccCceeEEeeccCCCcc
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~ 305 (630)
||.+++... .......+|.+.+..+.|.+ .+..+|++|+.||++++||+++-. ++.......-.+- +.
T Consensus 327 ~DPR~~~gs-~v~~s~~gH~nwVssvkwsp-----~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl-----~v 395 (423)
T KOG0313|consen 327 WDPRTGDGS-VVSQSLIGHKNWVSSVKWSP-----TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL-----SV 395 (423)
T ss_pred cCCCCCCCc-eeEEeeecchhhhhheecCC-----CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEE-----EE
Confidence 999987533 11223345666554444443 455778999999999999998776 5555444433332 22
Q ss_pred cccchhhhhhhccccccccCCc
Q 006808 306 SQKSATAAIFAAKLQDIVKPAS 327 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~ 327 (630)
++.... .|++|+-|..++++.
T Consensus 396 dW~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 396 DWNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred eccCCc-eEEeccCcceEEEec
Confidence 333222 788888887666544
No 61
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.1e-26 Score=201.39 Aligned_cols=236 Identities=17% Similarity=0.238 Sum_probs=190.8
Q ss_pred eEECCCC-CEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 11 TSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 11 ~~fs~dg-~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++|+++. +.+++++.||.+++||+.- ...++.++.|...+. .+.|++.. ...
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~------------------Svdwn~~~--------r~~ 119 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY------------------SVDWNTVR--------RRI 119 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE------------------Eecccccc--------cee
Confidence 4899965 5788999999999999642 345667776655444 45555554 567
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
+++++.||+|++|++..++.+.++ .+|...|...+|+| .++.|+++|.|+++++||++..-....+..|...+.|+.|
T Consensus 120 ~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw 198 (311)
T KOG0277|consen 120 FLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDW 198 (311)
T ss_pred EEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecc
Confidence 888899999999999999988776 58999999999999 6788999999999999999865444458999999999999
Q ss_pred cc-CCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 168 SS-DGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 168 ~p-~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
+. +...|++|+ +.|++||+++-+ ++..+.+|.-.|+.+.|||...-++++++.|-+++|||...+.. ++.+.
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds----~~e~~ 274 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS----AIETV 274 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh----hhhhh
Confidence 98 566777877 899999999854 67888999999999999998766666666899999999986552 35556
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.++..++.-+.++. -++.++|+++.|+.++||+.
T Consensus 275 ~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 275 DHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccceEEecccccc----ccCceeeecccccceeeecc
Confidence 67777777666651 35789999999999999984
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=6.2e-25 Score=216.60 Aligned_cols=233 Identities=21% Similarity=0.298 Sum_probs=194.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..+.|+|+++++++++.||.|++|++.+++....+..+.. .+.++.|.+. +.+
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~------------------~i~~~~~~~~---------~~~ 107 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS------------------YVSSVAFSPD---------GRI 107 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC------------------cEEEEEEcCC---------CCE
Confidence 3669999999999999999999999998877776654332 3556666654 456
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++++.+|.|.+||+.+++....+. .|...|.++.|+|++.++++++.++.|++||+.+++.+..+..|...+.++.|+
T Consensus 108 ~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 108 LSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred EEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence 7777779999999999888776654 688999999999998888888889999999999999999999888899999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|++..+++++ +.|++||+.+++.+..+..|...+.++.|+|++.++++++ .++.|++|++.+++.. ..+..+
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~-----~~~~~~ 260 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECV-----QTLSGH 260 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeE-----EEcccc
Confidence 9998888877 8999999999988888888999999999999987777765 5999999999876533 222233
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
...+..+.+. |++.+|++++.||.+++|+
T Consensus 261 ~~~i~~~~~~-----~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWS-----PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEEC-----CCCCEEEEecCCCeEEecC
Confidence 3345566666 8899999999999999996
No 63
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=206.54 Aligned_cols=274 Identities=15% Similarity=0.172 Sum_probs=215.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
.+++++|+.|..-++|++.++.....+ .+|...|+++.|+.+|.+|+||+.+|.|++|...++.....+......+.-+
T Consensus 76 ~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl 154 (399)
T KOG0296|consen 76 NNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL 154 (399)
T ss_pred CceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEE
Confidence 789999999999999999999977666 4899999999999999999999999999999999999888887666788899
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.|+|.+.+|+.|+ |.+.+|.+.++...+.+.||..++++=.|.|+|+.++++. .|++|++|++.++.+. +...
T Consensus 155 ~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-~dgti~~Wn~ktg~p~---~~~~- 229 (399)
T KOG0296|consen 155 KWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY-DDGTIIVWNPKTGQPL---HKIT- 229 (399)
T ss_pred EecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe-cCceEEEEecCCCcee---EEec-
Confidence 9999999999998 9999999999888889999999999999999999999987 6999999999999754 2222
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee-------ccCCCcccccchhhhhhh
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-------SEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~ 316 (630)
+.......+..++ ..+..+++|+.++.+++-+..+|+.+....+..+... -...+.|. ....+..++
T Consensus 230 ~~e~~~~~~~~~~-----~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~-ss~lpL~A~ 303 (399)
T KOG0296|consen 230 QAEGLELPCISLN-----LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS-SSKLPLAAC 303 (399)
T ss_pred ccccCcCCccccc-----cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc-ccccchhhc
Confidence 1122333444444 6788999999999999999888887665443111110 00001111 122446677
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
|+.||.+-+|+.. ...++....|...|+.+.|-+ -.+| +++..++.+|.|+...+
T Consensus 304 G~vdG~i~iyD~a---------~~~~R~~c~he~~V~~l~w~~-t~~l-~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 304 GSVDGTIAIYDLA---------ASTLRHICEHEDGVTKLKWLN-TDYL-LTACANGKVRQWDARTG 358 (399)
T ss_pred ccccceEEEEecc---------cchhheeccCCCceEEEEEcC-cchh-eeeccCceEEeeecccc
Confidence 7887766555422 223335557999999999999 6777 88888999999998554
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-25 Score=224.11 Aligned_cols=272 Identities=17% Similarity=0.240 Sum_probs=216.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.|+ ..+.||+|.. ..|++|+..++........+ ...++++.|.+. +.+|++
T Consensus 184 dWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~---------G~~Lav 234 (484)
T KOG0305|consen 184 DWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPD---------GSHLAV 234 (484)
T ss_pred hcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC------------------CCceEEEEECCC---------CCEEEE
Confidence 677 4457777764 57999999999865544311 346778888776 889999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEEccC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSD 170 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~ 170 (630)
|+.+|.|.|||..+.+.+..+...|...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|+++
T Consensus 235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 99999999999999888866654599999999997 66799999999999999998876555 8889999999999999
Q ss_pred CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCc-EEEEE-eeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSS-AVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 171 ~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
+.++|+|+ +.+.|||.....++.++..|...|.+++|+|-.. .||+| |+.|+.|++||..++... ......
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-----~~vdtg 387 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-----DSVDTG 387 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-----cccccC
Confidence 99999999 8999999988888999999999999999999544 45553 345899999999988733 333333
Q ss_pred ceeeeeEEecCCccCCCCCEEEEE--ecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccccccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAI--SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 324 (630)
.. ++.+.|+ +..+-|+++ ..++.|.||+..+.+.
T Consensus 388 sQ-VcsL~Ws-----k~~kEi~sthG~s~n~i~lw~~ps~~~-------------------------------------- 423 (484)
T KOG0305|consen 388 SQ-VCSLIWS-----KKYKELLSTHGYSENQITLWKYPSMKL-------------------------------------- 423 (484)
T ss_pred Cc-eeeEEEc-----CCCCEEEEecCCCCCcEEEEeccccce--------------------------------------
Confidence 44 4445554 555445543 3477899999865322
Q ss_pred CCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 325 PASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
...+.+|...|..+++||||..+ ++|+.|.++++|++-+
T Consensus 424 -----------------~~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 424 -----------------VAELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLFD 462 (484)
T ss_pred -----------------eeeecCCcceeEEEEECCCCCEE-EEecccCcEEeccccC
Confidence 11455899999999999999999 9999999999999843
No 65
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.1e-24 Score=226.66 Aligned_cols=228 Identities=14% Similarity=0.174 Sum_probs=173.6
Q ss_pred eeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEE
Q 006808 23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA 102 (630)
Q Consensus 23 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd 102 (630)
|+.++.|++|+......+..+.+|.. .+.+++|+|.+ +.+|++|+.||.|+|||
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~------------------~V~~lafsP~~--------~~lLASgS~DgtIrIWD 103 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTS------------------SILDLQFNPCF--------SEILASGSEDLTIRVWE 103 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCC------------------CEEEEEEcCCC--------CCEEEEEeCCCeEEEEE
Confidence 45578888898877666666664443 46677777654 56899999999999999
Q ss_pred ccCCee-------eEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 103 VSAGQL-------KWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 103 ~~~~~~-------~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
+.++.. ......+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. +...|.+++|+|+|.+|
T Consensus 104 i~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 104 IPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred CCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence 986431 11233579999999999998876 5688999999999999998877776 56789999999999999
Q ss_pred EEeC--CeEEEEECCCCceeeEeecCCCCeEEE-----EEeeCCcEEEEEeeCC---CeEEEEEcCCCccccceeeeeec
Q 006808 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFM-----TFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l-----~~sp~~~~l~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
++++ +.|++||+++++.+.++.+|.+.+... .|++++.+++++|..+ +.|++||++..... .....+.
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p--l~~~~ld 260 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA--LVTMSID 260 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc--eEEEEec
Confidence 9887 799999999999999999998765433 3458889999988532 47999999864322 1222333
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.....+...+.+ ++|.++++|+.|+.|++|++..+
T Consensus 261 ~~~~~L~p~~D~-----~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 261 NASAPLIPHYDE-----STGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCccceEEeeeC-----CCCCEEEEEECCCeEEEEEccCC
Confidence 333333333333 67899999999999999998654
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8e-26 Score=229.89 Aligned_cols=236 Identities=15% Similarity=0.189 Sum_probs=191.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+|||.+ +|+|++.+|++|+.|.+|+||+..+.+|+.++.+|-..+..+.|.+.
T Consensus 51 dGpVRgv--~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhe------------------------ 104 (1202)
T KOG0292|consen 51 DGPVRGV--DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHE------------------------ 104 (1202)
T ss_pred CCcccee--eecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCC------------------------
Confidence 5899888 99999999999999999999999999999999988877777776665
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC--------C-----
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------G----- 149 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~--------~----- 149 (630)
-.+|++++.|.+|+||+.++++++..+ .||...|.|..|+|....++++|-|.+|++||+.. +
T Consensus 105 ---yPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~ 180 (1202)
T KOG0292|consen 105 ---YPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ 180 (1202)
T ss_pred ---CceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhh
Confidence 668999999999999999999999555 58999999999999999999999999999999852 1
Q ss_pred --------------c--eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEee
Q 006808 150 --------------S--LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD 209 (630)
Q Consensus 150 --------------~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp 209 (630)
. ..+.+.+|...|.-++|+|.-.++++|+ ..|++|.....+ .+.++.||.+.|+++-|+|
T Consensus 181 ~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 181 MRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred hhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC
Confidence 0 1234678999999999999999999998 799999987654 4667899999999999999
Q ss_pred CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 210 ~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
....+++.| .|+.|+|||+...+. +..+.+......+++.. |..+++++|-. +-+.||.
T Consensus 261 ~q~lIlSns-EDksirVwDm~kRt~-----v~tfrrendRFW~laah-----P~lNLfAAgHD-sGm~VFk 319 (1202)
T KOG0292|consen 261 HQDLILSNS-EDKSIRVWDMTKRTS-----VQTFRRENDRFWILAAH-----PELNLFAAGHD-SGMIVFK 319 (1202)
T ss_pred ccceeEecC-CCccEEEEecccccc-----eeeeeccCCeEEEEEec-----CCcceeeeecC-CceEEEE
Confidence 988998887 799999999988763 33443333333333333 66665555443 3333444
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=231.73 Aligned_cols=236 Identities=18% Similarity=0.306 Sum_probs=200.5
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEE-ecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+|..|. +.++++++.|++|++|+..++..+.. +.+|.+.+..+.+... +.
T Consensus 212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~---------------------------~~ 262 (537)
T KOG0274|consen 212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG---------------------------GD 262 (537)
T ss_pred hhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC---------------------------CC
Confidence 444565 56899999999999999999999888 8888877765555432 67
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
.+++|+.|.++++||+.+|++...+. +|.+.|.++... +..+++|+.|.+|++|++.++.++..+.+|.++|.++..
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence 89999999999999999999997765 899999999884 447888999999999999999999999999999999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
+ +.++++|+ ++|++||+.+++++.++.+|..+|.++.+.+. .++++++ .|++|++||+.+.. .|+..+.+
T Consensus 340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~----~c~~tl~~ 411 (537)
T KOG0274|consen 340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKR----KCIHTLQG 411 (537)
T ss_pred c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchh----hhhhhhcC
Confidence 8 77888888 89999999999999999999999999988765 7788887 69999999999983 26667776
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
+...+.... ..+++|++++.||.|++||..+++.++..+
T Consensus 412 h~~~v~~l~-------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 412 HTSLVSSLL-------LRDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred Ccccccccc-------cccceeEeccccccEEEeecccCceeeeec
Confidence 666654443 347999999999999999998887766543
No 68
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=7.2e-24 Score=215.04 Aligned_cols=313 Identities=14% Similarity=0.178 Sum_probs=241.0
Q ss_pred EECCCC--CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg--~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
-++|.- +.++.|+.+|.+.+|++.+++.++++++....++++.-+|. -..+
T Consensus 165 l~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa---------------------------LDVV 217 (910)
T KOG1539|consen 165 LLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA---------------------------LDVV 217 (910)
T ss_pred EecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc---------------------------ceEE
Confidence 356654 57889999999999999999999999987766666655554 5679
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEee-----------
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR----------- 156 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~----------- 156 (630)
++|..+|+|.+++++.++.+..+. | .++|++++|..||+. +++|+..|.+.+||+...+.+....
T Consensus 218 aiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~ 295 (910)
T KOG1539|consen 218 AIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGAT 295 (910)
T ss_pred EEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccce
Confidence 999999999999999999998884 5 499999999999987 5666677999999997543322111
Q ss_pred --------------------------------------------------------------------------------
Q 006808 157 -------------------------------------------------------------------------------- 156 (630)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (630)
T Consensus 296 fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 296 FLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred ecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence
Q ss_pred ----------------------------------------------------------------cCC------CCeEEEE
Q 006808 157 ----------------------------------------------------------------AST------KGISCMA 166 (630)
Q Consensus 157 ----------------------------------------------------------------~~~------~~v~~l~ 166 (630)
.+. ..+++++
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 000 3567888
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEe---ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
.++.|++.+.|. |.|-+|++++|-...+| +.|.++|++++...-++.+++++ .+|.+++||+.+.... ...
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~l~---~~l 531 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKVLK---KSL 531 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCccee---eee
Confidence 889999988887 99999999999888888 58999999999998889999988 5999999999887633 222
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
.+++... +.... .....++.+..|-.|.++|..+.+.++.+..+...+.... |+|+++ .|++++.|+
T Consensus 532 ~l~~~~~---~iv~h-----r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~Dgr----WlisasmD~ 598 (910)
T KOG1539|consen 532 RLGSSIT---GIVYH-----RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGR----WLISASMDS 598 (910)
T ss_pred ccCCCcc---eeeee-----ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCc----EEEEeecCC
Confidence 3333222 22222 4457788888999999999999988887766655544333 899999 999999999
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccce-eccccceec
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL-KSKRGRYVQ 380 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d-~~~~~w~~~ 380 (630)
++++||.- ....+..+ .-..+..++.|||+|.+| +|...| .-+++|.-+
T Consensus 599 tIr~wDlp--------t~~lID~~-~vd~~~~sls~SPngD~L-AT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 599 TIRTWDLP--------TGTLIDGL-LVDSPCTSLSFSPNGDFL-ATVHVDQNGIYLWSNK 648 (910)
T ss_pred cEEEEecc--------CcceeeeE-ecCCcceeeEECCCCCEE-EEEEecCceEEEEEch
Confidence 99987632 11122111 344578899999999999 888777 779999643
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.5e-24 Score=243.09 Aligned_cols=238 Identities=17% Similarity=0.256 Sum_probs=193.2
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++| .+++|+| ++.+||+|+.||+|+|||+.+++.+..+.+|.. .+.++.|.+.+
T Consensus 533 ~~v--~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~------------------~V~~l~~~p~~----- 587 (793)
T PLN00181 533 SKL--SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK------------------RVWSIDYSSAD----- 587 (793)
T ss_pred Cce--eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC------------------CEEEEEEcCCC-----
Confidence 345 4458987 478999999999999999999998888875544 35566666543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe-cCCCEEEEEeCCCcEEEEeCCCCc-eeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~ 160 (630)
+.+|++|+.||.|++||+.++..+..+. +...|.++.|+ ++|.+|++|+.||.|++||+++++ .+..+.+|..
T Consensus 588 ---~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~ 662 (793)
T PLN00181 588 ---PTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK 662 (793)
T ss_pred ---CCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence 6789999999999999999988876663 34689999995 478999999999999999998765 5677888999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCC------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.|.++.|. ++.++++++ ++|++||+..+ .++..+.+|...+..++|+|++.+|++++ .|+.|++|+....
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~ 740 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCC
Confidence 99999997 567888877 89999999743 56788999999999999999999999888 6999999998765
Q ss_pred ccccceeeee-----------ecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 233 KKQSASCVLA-----------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 233 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
... ..+. ..+....+..++|+ |++.+|++|+.+|.|+||++
T Consensus 741 ~~~---~s~~~~~~~~~~~~~~~~~~~~V~~v~ws-----~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPV---LSYKFKTIDPVSGLEVDDASQFISSVCWR-----GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred Cce---EEEecccCCcccccccCCCCcEEEEEEEc-----CCCCeEEEecCCCcEEEEec
Confidence 322 1111 12234467777777 89999999999999999985
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=212.29 Aligned_cols=231 Identities=14% Similarity=0.180 Sum_probs=191.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++.|-.||.+||+|...|.|+|||..+...+..+..|+.++....|+|. + +..
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~------------------d--------~t~ 125 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ------------------D--------NTM 125 (487)
T ss_pred eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc------------------C--------CeE
Confidence 45589999999999999999999997776667777777776665555544 2 677
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~ 166 (630)
+++|+.|+.+++||+.+.... ....+|+..|.|.+|+|... .++|||.||+|++||+++. ..+..+. |..+|..+.
T Consensus 126 l~s~sDd~v~k~~d~s~a~v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl 203 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYVQ-AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL 203 (487)
T ss_pred EEecCCCceEEEEEcCCcEEE-EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence 888999999999999999874 44468999999999999544 6899999999999999987 5666666 888999999
Q ss_pred EccCCCEEEEeC-CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 167 VSSDGKMLATAA-GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 167 ~~p~~~~l~~~~-g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
+-|.|..+++++ +.|++||+.+|. .+..+..|...|+|+.+..++..|++++ -|+.+++||+.+-+ .+..+.
T Consensus 204 ~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~K-----vv~s~~ 277 (487)
T KOG0310|consen 204 ALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYK-----VVHSWK 277 (487)
T ss_pred EcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccceE-----EEEeee
Confidence 999999999998 699999999654 4555556999999999999999999998 59999999976654 456666
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
.++.+..+..+ |++..++.|..+|.+.+-
T Consensus 278 ~~~pvLsiavs------~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 278 YPGPVLSIAVS------PDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred cccceeeEEec------CCCceEEEecccceeeee
Confidence 67777766554 899999999999988765
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.8e-25 Score=219.17 Aligned_cols=240 Identities=19% Similarity=0.267 Sum_probs=200.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ +....+.|++|.
T Consensus 218 ~~v--tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-----------------~h~~rvg~laW~--------- 269 (484)
T KOG0305|consen 218 ELV--TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-----------------SHASRVGSLAWN--------- 269 (484)
T ss_pred Cce--EEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-----------------CcCceeEEEecc---------
Confidence 456 4559999999999999999999999998888877763 234577899997
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
...+.+|+.+|.|..+|++..+.......+|...|..++|++++.++++|+.|+.+.|||.....++..+..|.+.|.
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 456889999999999999998876665678999999999999999999999999999999988899999999999999
Q ss_pred EEEEcc-CCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE-EeeCCCeEEEEEcCCCccccc
Q 006808 164 CMAVSS-DGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 164 ~l~~~p-~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~-~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+++|+| ...+||+|+ +.|++||..+++.+.... -...|..|.|++..+-|++ .|..+..|.||+..+.+..
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-- 424 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-- 424 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--
Confidence 999999 567888887 599999999999887765 4578999999998865555 4445678999999886543
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
....+|...+ ..+..+ |||..|++|+.|.++++|++-..
T Consensus 425 --~~l~gH~~RV-l~la~S-----Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 --AELLGHTSRV-LYLALS-----PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --eeecCCccee-EEEEEC-----CCCCEEEEecccCcEEeccccCC
Confidence 3334555554 444554 99999999999999999997543
No 72
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=220.00 Aligned_cols=319 Identities=14% Similarity=0.173 Sum_probs=223.1
Q ss_pred CCCCEEEEeeCCCcEEEEECCCCc------EEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 15 PALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
|.++||++||.||.|++|+...-. +...+..|...++.++.... +..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---------------------------~~t 87 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---------------------------GKT 87 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---------------------------CCc
Confidence 466789999999999999875322 35556666666665544433 567
Q ss_pred EEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEE-ecCCCEEEEEeCCCcEEEEeCCCC--ceeEE--------e
Q 006808 89 LVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISF-ATHGSCIYSAGADGMVCEIDPLTG--SLLGK--------F 155 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~-s~~g~~l~s~~~dg~v~iwd~~~~--~~~~~--------~ 155 (630)
|++++.|-+|++|+...+. ++ .....|...|.|+++ .++...+++||-|+.|++||+.++ +.+.. +
T Consensus 88 lIS~SsDtTVK~W~~~~~~~~c~-stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNTFCM-STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred eEEecCCceEEEeecccCcchhH-hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 9999999999999998873 44 445679999999999 778888999999999999999977 22222 2
Q ss_pred e-cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 156 R-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 156 ~-~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
. ++..+|++++.++.|..+++|+ +.+++||.++++.+..+.||+..|..+..++||..++++++ ||+|++||+...
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS-DgtIrlWdLgqQ 245 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS-DGTIRLWDLGQQ 245 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC-CceEEeeecccc
Confidence 2 6777999999999998888888 89999999999999999999999999999999999999985 999999999887
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc---ccccCceeEEeeccCCCcccccc
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE---LRNTKATKILSSSEDVNSKSQKS 309 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 309 (630)
+ |+.++..+...+..+..+ |+=.++.+|+.||.|..=|+.+... +.....+..... .....+
T Consensus 246 r-----Cl~T~~vH~e~VWaL~~~-----~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~----~~~~~~- 310 (735)
T KOG0308|consen 246 R-----CLATYIVHKEGVWALQSS-----PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH----LHEHDN- 310 (735)
T ss_pred c-----eeeeEEeccCceEEEeeC-----CCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhh----hccccC-
Confidence 6 444444333334444444 7778999999999999888877421 111111110000 000011
Q ss_pred hhhhhhhccccccccCCceeEEEEE---cC-------ccCceeeE-----Eecc-CCCcEEEeecCCcceeeccccceec
Q 006808 310 ATAAIFAAKLQDIVKPASVHTFVAY---GL-------LLKPSFQK-----ILVN-SGEDINLNCSQDGVLLPMSQSLLKS 373 (630)
Q Consensus 310 ~~~~i~~~~~d~~~~~~~~~~~~~~---g~-------~~~~~~~~-----~~~h-~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (630)
.+-+++.|+.++-|.+...+.. |. ...+.... ...| ...+...++-.|.+++ +|-...|.
T Consensus 311 ---~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhV-lTkDa~gn 386 (735)
T KOG0308|consen 311 ---SVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHV-LTKDAKGN 386 (735)
T ss_pred ---CceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceE-eeecCCCC
Confidence 2344444544444433322211 10 00111110 0011 1235556667788888 99999999
Q ss_pred cccceecc
Q 006808 374 KRGRYVQN 381 (630)
Q Consensus 374 ~~~w~~~~ 381 (630)
+.+|++-.
T Consensus 387 v~lwDIl~ 394 (735)
T KOG0308|consen 387 VALWDILA 394 (735)
T ss_pred EEEEEeee
Confidence 99999853
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2e-25 Score=214.47 Aligned_cols=283 Identities=13% Similarity=0.185 Sum_probs=199.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcE-EEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+..| .++++.|.|-.|++||.|.+|++||+..... ...|+.... .....+..+.|.+.
T Consensus 167 tk~V--sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--------------~E~h~i~sl~ys~T----- 225 (641)
T KOG0772|consen 167 TKIV--SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--------------CETHQINSLQYSVT----- 225 (641)
T ss_pred ceEE--EEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--------------ccccccceeeecCC-----
Confidence 4567 4559999999999999999999999874332 111221111 11224556666664
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeE-----------EccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW-----------RLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~-----------~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~ 149 (630)
+..|++.++....+|+|-....... ...+||...++|.+|+|..+ .|++++.||++++||+...
T Consensus 226 ----g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 226 ----GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred ----CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence 6778888888899999976443321 12368999999999999654 5999999999999999765
Q ss_pred c-eeEEeec-----CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce---eeEeecCCC--CeEEEEEeeCCcEEEE
Q 006808 150 S-LLGKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPG--AVRFMTFSDNGKYVLS 216 (630)
Q Consensus 150 ~-~~~~~~~-----~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~--~v~~l~~sp~~~~l~~ 216 (630)
+ ..+.|+. ..-+++.++|+|+|+.+|+|+ |+|.+|+..+... ...-..|.. .|++|.||++|++|++
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 3 3333332 223789999999999999988 9999999855432 222356766 8999999999999999
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeec--CCceeeeeEEecCCccCCCCCEEEEEec------CCcEEEEEcCCccccc
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEELR 288 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~ 288 (630)
-| .|+++++||++..+.. +.... .......-++|+ |+.++|++|+. .|.+++||..+...+.
T Consensus 382 Rg-~D~tLKvWDLrq~kkp----L~~~tgL~t~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 382 RG-FDDTLKVWDLRQFKKP----LNVRTGLPTPFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred cc-CCCceeeeeccccccc----hhhhcCCCccCCCCccccC-----CCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 88 6999999999987643 22111 122223445565 99999999965 5689999998888777
Q ss_pred ccCceeEEeeccCCCcccccchhhhhhhccccccccC
Q 006808 289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
........+. ...++..+..|++++.||.++.
T Consensus 452 ki~i~~aSvv-----~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 452 KIDISTASVV-----RCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred EecCCCceEE-----EEeecchhhheeeecCCCceEE
Confidence 6654433322 1123344458999998775443
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=6.4e-26 Score=212.43 Aligned_cols=277 Identities=17% Similarity=0.156 Sum_probs=212.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.|.++ .|-++...|++|+.|..|++|++..++ .+.++.+..+.+..+.|.++
T Consensus 176 gev~~v--~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~----------------------- 230 (459)
T KOG0288|consen 176 GEVHDV--EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD----------------------- 230 (459)
T ss_pred ccccee--EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC-----------------------
Confidence 445445 899998999999999999999987666 44555544444444433333
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+..+++++.|+.+++|++...+...++ .+|+..|+++.|......+++|+.|.+|+.||+....|.+++-. ...
T Consensus 231 ----~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~ 304 (459)
T KOG0288|consen 231 ----NKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQ 304 (459)
T ss_pred ----CceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-ccc
Confidence 777999999999999999999988666 47999999999988766699999999999999999888877553 334
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+..|+.+ ...+++|. +.|++||+++..+....+.+. .|+++..++++..+++++ .|.++.+.|+++.... .
T Consensus 305 cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~---~ 377 (459)
T KOG0288|consen 305 CNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIR---Q 377 (459)
T ss_pred ccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec-CCCceeeeecccccEE---E
Confidence 4555554 34556665 799999999999998888665 999999999999999987 7999999999987633 1
Q ss_pred eeeecC--CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhc
Q 006808 240 VLAMEH--PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 240 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
.+.... .+..++-+.|+ |++.|+++|+.||.|+||++.+++.-...+ .
T Consensus 378 ~~sA~g~k~asDwtrvvfS-----pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~-------------------------~ 427 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFS-----PDGSYVAAGSADGSVYIWSVFTGKLEKVLS-------------------------L 427 (459)
T ss_pred EeeccccccccccceeEEC-----CCCceeeeccCCCcEEEEEccCceEEEEec-------------------------c
Confidence 222111 11224445565 999999999999999999998876522111 0
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccc
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (630)
+ .....|.+++|+|.|.+| ++++.++.+.+|
T Consensus 428 s----------------------------~s~~aI~s~~W~~sG~~L-lsadk~~~v~lW 458 (459)
T KOG0288|consen 428 S----------------------------TSNAAITSLSWNPSGSGL-LSADKQKAVTLW 458 (459)
T ss_pred C----------------------------CCCcceEEEEEcCCCchh-hcccCCcceEec
Confidence 0 001158899999999999 899888888888
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=5.9e-25 Score=230.12 Aligned_cols=297 Identities=17% Similarity=0.134 Sum_probs=215.7
Q ss_pred eEeEECCCCCEEEEee--CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
.++..+|||..+|||+ .||.++||+...--. ............... ...| ...++|+.|.+. +
T Consensus 17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~--~~~~~~~~l~k~l~~---m~~h-~~sv~CVR~S~d---------G 81 (942)
T KOG0973|consen 17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD--EKEEKNENLPKHLCT---MDDH-DGSVNCVRFSPD---------G 81 (942)
T ss_pred EEEEecCCceeEecCCccccccceeeccccccc--hhhhhhcccchhhee---eccc-cCceeEEEECCC---------C
Confidence 6779999999999999 799999998753210 000000000000000 0122 336777878765 8
Q ss_pred cEEEEEeCCCeEEEEEccC----------C--------eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 87 SLLVLGTGGGDVLALAVSA----------G--------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~----------~--------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
.+||+|+.|+.|.||.... | +++ ..+.+|.+.|.+++|+|++.++++++.|++|.+|+..+
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEecccceEEEEcccc
Confidence 8999999999999999872 0 122 34468999999999999999999999999999999999
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC------CCCeEEEEEeeCCcEEEEEeeC
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
++.+..+.+|.+.|..+.|.|-|+++|+-+ ++|++|.+.+....+.+..+ ......+.|||||.+|++...-
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 999999999999999999999999999988 89999998887777766544 2357899999999999986543
Q ss_pred CC---eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC------------EEEEEecCCcEEEEEcCCcc
Q 006808 221 ER---YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL------------YVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 221 d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+ ++.|.+-.+-+. .....+|.. .+.++.|++.-|..... .+|+|+.|+.|.||.....+
T Consensus 241 n~~~~~~~IieR~tWk~----~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKV----DKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred cCCcceeEEEecCCcee----eeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 32 567766544331 123345555 66777777543321111 57888999999999874443
Q ss_pred cccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceee
Q 006808 286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP 365 (630)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (630)
++.. +.. .-...|..++|+|||..|
T Consensus 316 Pl~v---------------------------i~~---------------------------lf~~SI~DmsWspdG~~L- 340 (942)
T KOG0973|consen 316 PLFV---------------------------IHN---------------------------LFNKSIVDMSWSPDGFSL- 340 (942)
T ss_pred chhh---------------------------hhh---------------------------hhcCceeeeeEcCCCCeE-
Confidence 3211 111 112368899999999999
Q ss_pred ccccceeccccceecc
Q 006808 366 MSQSLLKSKRGRYVQN 381 (630)
Q Consensus 366 ~s~s~d~~~~~w~~~~ 381 (630)
+.+|.||++.+-.++.
T Consensus 341 facS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 341 FACSLDGTVALIHFEE 356 (942)
T ss_pred EEEecCCeEEEEEcch
Confidence 9999999999987754
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6e-26 Score=205.86 Aligned_cols=238 Identities=18% Similarity=0.236 Sum_probs=196.2
Q ss_pred CCCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEec-ccccccccccccccccccccccceeeEEecccccc
Q 006808 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 1 ~~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
|...+| +|+.||.|...||+|+.||.|+||.+.+|.|+..|. .|.. .++|+.|...
T Consensus 261 Mmd~aV--lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk------------------Gvt~l~FSrD--- 317 (508)
T KOG0275|consen 261 MMDDAV--LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK------------------GVTCLSFSRD--- 317 (508)
T ss_pred ecccce--EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc------------------CeeEEEEccC---
Confidence 456789 888999999999999999999999999999998886 3333 4555555544
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+..+++++.|.++++.-+.+|+++..+ +||++.|+...|.++|.++++++.||+|++|+..+.+|+.+|+...
T Consensus 318 ------~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 318 ------NSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred ------cchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 667999999999999999999998766 5899999999999999999999999999999999999999998654
Q ss_pred C--CeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecC---CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 K--GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~--~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h---~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
. +|.++-.-|. ...++++. ++|++.++ .|+.+++|... .+...+.+.+|.|.++++.+ .|+.++.|...+
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~s 468 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLS 468 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeec
Confidence 3 7888888774 45666666 89999997 57888888532 35566778899999999998 799999999999
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
++.. ....-|...++..... |..+.|++-+.||.+++|.
T Consensus 469 G~LE----~tl~VhEkdvIGl~HH------PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLE----RTLPVHEKDVIGLTHH------PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Ccee----eeeecccccccccccC------cccchhhhhcccchhhhcC
Confidence 8754 2222355555554443 7889999999999999995
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-23 Score=182.15 Aligned_cols=298 Identities=15% Similarity=0.195 Sum_probs=219.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+..||++ +|+|.|.+.|+|++..+++|.-...-.-+. . +|..... |
T Consensus 32 sqairav--~fhp~g~lyavgsnskt~ric~yp~l~~~r--~-----------------~hea~~~------p------- 77 (350)
T KOG0641|consen 32 SQAIRAV--AFHPAGGLYAVGSNSKTFRICAYPALIDLR--H-----------------AHEAAKQ------P------- 77 (350)
T ss_pred hhheeeE--EecCCCceEEeccCCceEEEEccccccCcc--c-----------------ccccccC------C-------
Confidence 4568666 999999999999999999987542111000 0 1111000 0
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-----eEEeec
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRA 157 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~ 157 (630)
........+.|.+.|.|.+|+|+|.+|++|+.|.+|++.-+....+ -..|..
T Consensus 78 -----------------------p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm 134 (350)
T KOG0641|consen 78 -----------------------PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM 134 (350)
T ss_pred -----------------------CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee
Confidence 0011122346999999999999999999999999999987654332 234777
Q ss_pred CCCCeEEEEEcc----CCCEEEEeC-C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 158 STKGISCMAVSS----DGKMLATAA-G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 158 ~~~~v~~l~~~p----~~~~l~~~~-g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
|.+.|..++|-. .|.+|++++ | .|++-|...|+....+.+|++.|.++- +-+|-.+++++ .|.+|++||++
T Consensus 135 hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgs-qdktirfwdlr 212 (350)
T KOG0641|consen 135 HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGS-QDKTIRFWDLR 212 (350)
T ss_pred cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccC-CCceEEEEeee
Confidence 999999999964 356788877 4 777779999999999999999998762 33466666665 79999999998
Q ss_pred CCccccceeeeeec-------CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCC
Q 006808 231 GVKKQSASCVLAME-------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (630)
Q Consensus 231 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (630)
-.. |+..+. .....+..++.. |.|++|++|-.|....+||++-++.++.+.|....+.|.. |
T Consensus 213 v~~-----~v~~l~~~~~~~glessavaav~vd-----psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-f 281 (350)
T KOG0641|consen 213 VNS-----CVNTLDNDFHDGGLESSAVAAVAVD-----PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-F 281 (350)
T ss_pred ccc-----eeeeccCcccCCCcccceeEEEEEC-----CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-e
Confidence 765 222222 123556667776 9999999999999999999999999998888776666555 7
Q ss_pred cccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 304 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+|... ++++++.|..+++-+.+--.+. .-..-.+..|+..++.+.|+|..--+ +|.|.|++..+|.+
T Consensus 282 sp~a~----yllt~syd~~ikltdlqgdla~----el~~~vv~ehkdk~i~~rwh~~d~sf-isssadkt~tlwa~ 348 (350)
T KOG0641|consen 282 SPGAH----YLLTCSYDMKIKLTDLQGDLAH----ELPIMVVAEHKDKAIQCRWHPQDFSF-ISSSADKTATLWAL 348 (350)
T ss_pred CCCce----EEEEecccceEEEeecccchhh----cCceEEEEeccCceEEEEecCcccee-eeccCcceEEEecc
Confidence 88877 9999999987776543322221 11222445799999999999998877 89999999999965
No 78
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=2.3e-23 Score=215.95 Aligned_cols=203 Identities=15% Similarity=0.214 Sum_probs=162.6
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcE-------EEEecccccccccccccccccccccccceeeEEec
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQV-------QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (630)
+++| .+++|+| ++++||+|+.|++|+|||+.++.. +..+. +| ...+.++.|.
T Consensus 75 ~~~V--~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-----------------gH-~~~V~~l~f~ 134 (493)
T PTZ00421 75 EGPI--IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-----------------GH-TKKVGIVSFH 134 (493)
T ss_pred CCCE--EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-----------------CC-CCcEEEEEeC
Confidence 4678 5559999 889999999999999999976532 33343 33 2356677787
Q ss_pred ccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 006808 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (630)
|.. ..+|++|+.|+.|+|||+.+++....+ .+|...|.+++|+|+|.+|++++.|++|++||+++++.+..
T Consensus 135 P~~--------~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 135 PSA--------MNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred cCC--------CCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 653 568999999999999999999877555 57999999999999999999999999999999999999999
Q ss_pred eecCCCC-eEEEEEccCCCEEEEeC------CeEEEEECCCCc-eeeEeecC-CCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 155 FRASTKG-ISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 155 ~~~~~~~-v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~-~~~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
+.+|.+. +..+.|.|++..+++++ +.|++||+++.. ++.....+ ...+....|++++.+|++++..|+.|+
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 9888764 45778999877776643 689999998764 34333333 345666788999999998876699999
Q ss_pred EEEcCCCcc
Q 006808 226 LWRTDGVKK 234 (630)
Q Consensus 226 vwd~~~~~~ 234 (630)
+|++..+..
T Consensus 286 iwdl~~~~~ 294 (493)
T PTZ00421 286 CFELMNERL 294 (493)
T ss_pred EEEeeCCce
Confidence 999998763
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=2.8e-24 Score=199.44 Aligned_cols=239 Identities=16% Similarity=0.226 Sum_probs=183.5
Q ss_pred CcccceeEeEECC---CCCEEEEeeCCCcEEEEECCCCcEE----EEecccccccccccccccccccccccceeeEEecc
Q 006808 3 SSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 3 s~~V~~~~~~fs~---dg~~las~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
++||+++ +|-- ....|+++|.|.++++|.++.+... ...+||...+.++...++
T Consensus 144 t~~ik~v--~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s----------------- 204 (423)
T KOG0313|consen 144 TGPIKSV--AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS----------------- 204 (423)
T ss_pred Ccceeee--EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC-----------------
Confidence 4677444 4432 2246999999999999998877643 222344444443333322
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCC------------------------eeeEEccCCCCCCEEEEEEecCCCE
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAG------------------------QLKWRLSDCHPGGVSAISFATHGSC 131 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~------------------------~~~~~~~~~h~~~v~~~~~s~~g~~ 131 (630)
+..+++|+.|..|.||+..+. +.....+.||+.+|.++.|++ ...
T Consensus 205 ----------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 205 ----------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ----------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 788999999999999993210 011233468999999999998 668
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc---eeeEeecCCCCeEEEE
Q 006808 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGAVRFMT 206 (630)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~---~~~~~~~h~~~v~~l~ 206 (630)
+++++.|.+|+.||+.+++++.++.+ ...+.|+.++|...+|++|+ ..|++||.+++. ...+|.+|.+.|.++.
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVK 352 (423)
T ss_pred eEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhee
Confidence 99999999999999999999988874 45789999999999999998 799999999874 4567899999999999
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
|+|...+.+++++.|+++++||+++.+.. ++.+..+..-+-++.|. ++..|++|+.|++|+|+...
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~p----lydI~~h~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKAP----LYDIAGHNDKVLSVDWN------EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCCc----ceeeccCCceEEEEecc------CCceEEeccCcceEEEeccc
Confidence 99999888887779999999999997633 44444444444444453 57899999999999998753
No 80
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=190.99 Aligned_cols=286 Identities=18% Similarity=0.207 Sum_probs=195.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++.| .+++||.||++||+++.|++|+||++...... .|.. + ..++..+ ..+.+.|.|.-
T Consensus 86 ~~~v--t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----eHr~----~--R~nve~d----hpT~V~FapDc----- 144 (420)
T KOG2096|consen 86 KKEV--TDVAFSSDGKKLATISGDRSIRLWDVRDFENK----EHRC----I--RQNVEYD----HPTRVVFAPDC----- 144 (420)
T ss_pred CCce--eeeEEcCCCceeEEEeCCceEEEEecchhhhh----hhhH----h--hccccCC----CceEEEECCCc-----
Confidence 4578 45599999999999999999999999763321 1100 0 0000111 22344454442
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC---eee--------EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG---QLK--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~---~~~--------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~ 151 (630)
..+++.+-...++++|.+... ... ..+...|...|..+.....+.+|++++.|..|.+|+++ |+.
T Consensus 145 ---~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 145 ---KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred ---ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 334444444455999987532 211 12334577788888888889999999999999999998 999
Q ss_pred eEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECC---CC-----ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS---DH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~---~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
++.+......-+..+++|+|+++++++ -.|++|.+- .| ..+..++||...|..++|+|+...+++.+ .|
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-kD 299 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-KD 299 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-cC
Confidence 999887777788899999999999998 689999763 22 23556789999999999999999999988 79
Q ss_pred CeEEEEEcCCCccccce-eeee-----e-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 222 RYIALWRTDGVKKQSAS-CVLA-----M-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
|++++||+.-.-..... .++. + ......+ -+..+ |+|..|+.... ..+++|..++|+...+.+
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~ls-----P~g~~lA~s~g-s~l~~~~se~g~~~~~~e--- 369 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELS-----PSGDSLAVSFG-SDLKVFASEDGKDYPELE--- 369 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeC-----CCCcEEEeecC-CceEEEEcccCccchhHH---
Confidence 99999998643211000 0111 0 1111222 23333 88887766544 578888877665432221
Q ss_pred EEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecc
Q 006808 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (630)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (630)
..|...|.+++|+++|+++ +|++ |+-+
T Consensus 370 ---------------------------------------------------~~h~~~Is~is~~~~g~~~-atcG-dr~v 396 (420)
T KOG2096|consen 370 ---------------------------------------------------DIHSTTISSISYSSDGKYI-ATCG-DRYV 396 (420)
T ss_pred ---------------------------------------------------HhhcCceeeEEecCCCcEE-eeec-ceee
Confidence 1577789999999999999 8888 5555
Q ss_pred ccc
Q 006808 375 RGR 377 (630)
Q Consensus 375 ~~w 377 (630)
|+.
T Consensus 397 rv~ 399 (420)
T KOG2096|consen 397 RVI 399 (420)
T ss_pred eee
Confidence 543
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=4.4e-24 Score=221.38 Aligned_cols=239 Identities=20% Similarity=0.289 Sum_probs=196.4
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..+.|+. ++|..-+.+|++|+.|.+++|||..+|.|.+.+.+|.+.+..+...
T Consensus 248 H~g~V~~--l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~------------------------- 300 (537)
T KOG0274|consen 248 HFGGVWG--LAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID------------------------- 300 (537)
T ss_pred CCCCcee--EEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-------------------------
Confidence 3567844 4887777899999999999999999999999999777655432221
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
...+++|+.|.+|++|++.++.++..+ .+|.++|+++..+ +.++++|+.|++|++||+.+++++.++.+|...
T Consensus 301 ----~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 301 ----PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred ----CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 445777899999999999999998555 4699999999997 789999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
|+++.+.+. ..+++|+ ++|++||+.+. +++.++.+|..-+..+.+. +++|++++ .|++|++||..+++.
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~-aD~~Ik~WD~~~~~~---- 445 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSS-ADGTIKLWDAEEGEC---- 445 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEecc-ccccEEEeecccCce----
Confidence 999988765 7888888 89999999999 9999999999988776654 67788877 699999999998873
Q ss_pred eeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
...+.. +...+..+.+ ....+++++.+|.+++||++++...+..
T Consensus 446 -~~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 446 -LRTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred -eeeeccCCcccEEEeec-------CcceEEEEecCCeeEEEecccCchhhhh
Confidence 334433 2233333332 2478899999999999999999876654
No 82
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.9e-24 Score=213.71 Aligned_cols=335 Identities=13% Similarity=0.113 Sum_probs=237.2
Q ss_pred eeEeEECCCCCEEEEeeCCCcEEEEECCCCcEE---EEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
++++.|++..++|.+..+|..++|||+..-..+ ..+--|..-+..+..-|.. -| ...-.| .
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~n--v~-~~~~ac---l---------- 390 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCN--VH-SPTAAC---L---------- 390 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccccc--cc-Cccccc---C----------
Confidence 467899999999999999999999999764432 2222233333322211110 00 000001 1
Q ss_pred CCcEEEEEeCCCeEEEEEccCCe---eeEE-cc--------------------------------CCCCCCEEEEEEecC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQ---LKWR-LS--------------------------------DCHPGGVSAISFATH 128 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~---~~~~-~~--------------------------------~~h~~~v~~~~~s~~ 128 (630)
....+++|+.||+|++|++..+. ...+ ++ -+...++.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 14458999999999999997621 1100 00 012346999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc---CCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCe
Q 006808 129 GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAV 202 (630)
Q Consensus 129 g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p---~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v 202 (630)
|++|++|..-|++++|++..-+....+.+|...|.|+.|+. ..++||+++ ..|++||+... .++.++.+|...|
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 99999999999999999999998889999999999999985 357888888 68999998654 4678899999999
Q ss_pred EEEEEeeCC--cEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC---ceeeeeEEecCCccCCCCCEEEEEecCCcEE
Q 006808 203 RFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (630)
Q Consensus 203 ~~l~~sp~~--~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~ 277 (630)
+++.|..+| ..++++| .|+.|.+--..... ...++...++ ...+.-+.. .|..+++++++.|..|+
T Consensus 551 TsvKFa~~gln~~MiscG-ADksimFr~~qk~~---~g~~f~r~t~t~~ktTlYDm~V-----dp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCG-ADKSIMFRVNQKAS---SGRLFPRHTQTLSKTTLYDMAV-----DPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred eEEEEeecCCceEEEecc-Cchhhheehhcccc---CceeccccccccccceEEEeee-----CCCcceEEEEecccceE
Confidence 999999887 6788887 58766443222111 0112222221 111222233 38899999999999999
Q ss_pred EEEcCCcccccccCceeEEeeccC--CCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEE
Q 006808 278 IWYGQNIEELRNTKATKILSSSED--VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (630)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~ 355 (630)
||++.+|++.+.++.....-...+ ...|.+. ||++.+.|.++.+ ++.....++.++.+|...|+.+
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi----Y~atScsdktl~~--------~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI----YLATSCSDKTLCF--------VDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCcc----EEEEeecCCceEE--------EEeccchhhhhhcCcchheeee
Confidence 999999999887765432211111 1345555 8888888764333 4456678888999999999999
Q ss_pred eecCCcceeeccccceeccccceec
Q 006808 356 NCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 356 ~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.|++|-+.| +|.+.|+.|.+|.+.
T Consensus 690 kF~nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 690 KFLNDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred eecccchhh-eeecCCceEEEEECc
Confidence 999999999 999999999999874
No 83
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.8e-25 Score=204.76 Aligned_cols=280 Identities=15% Similarity=0.160 Sum_probs=213.9
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcE
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v 141 (630)
||.. .+.|++-+|.. -..+++|+.||.|+|||+....+..++ .+|.+.|.++++.. ..+++++.|.+|
T Consensus 64 gHrd-GV~~lakhp~~--------ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 64 GHRD-GVSCLAKHPNK--------LSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cccc-ccchhhcCcch--------hhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcce
Confidence 4433 44555555443 356899999999999999999888666 58999999999976 678999999999
Q ss_pred EEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 142 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
+.|-+.- .+.+++.+ ...+..+.-+..+..+++++..|.|||.....++..+.-....|.++.|+|....++.++..|
T Consensus 132 K~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 132 KQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eeeeccC-Ccceeeec-cccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 9999764 46777664 445677777777888899889999999998889999988888899999999887666665469
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc-ccccccCceeEEeecc
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI-EELRNTKATKILSSSE 300 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~ 300 (630)
+.|.+||++...+. ...+..+. ...++|+ |.+--+++|++|..++.||.... ..+..++....++...
T Consensus 210 rsIvLyD~R~~~Pl-~KVi~~mR-----TN~Iswn-----PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 210 RSIVLYDLRQASPL-KKVILTMR-----TNTICWN-----PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV 278 (433)
T ss_pred CceEEEecccCCcc-ceeeeecc-----ccceecC-----ccccceeeccccccceehhhhhhcccchhhcccceeEEEe
Confidence 99999999998765 12222222 2345666 87778889999999999998776 4566677766666665
Q ss_pred CCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+ |+|.++ -+++|+.|.+|+++...---.....-... -..|.|+.||-|.+|+ +|||.|+++|+|..
T Consensus 279 d-fsptG~----EfvsgsyDksIRIf~~~~~~SRdiYhtkR-------Mq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 279 D-FSPTGQ----EFVSGSYDKSIRIFPVNHGHSRDIYHTKR-------MQHVFCVKYSMDSKYI-ISGSDDGNVRLWKA 344 (433)
T ss_pred c-cCCCcc----hhccccccceEEEeecCCCcchhhhhHhh-------hheeeEEEEeccccEE-EecCCCcceeeeec
Confidence 5 899999 89999999988875421111110111111 1258999999999999 99999999999976
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=190.49 Aligned_cols=241 Identities=19% Similarity=0.256 Sum_probs=191.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++|+++ + -+|.|+|+||.|-+|+|||+.+...+..+..|.+.++++.|.++ ..
T Consensus 43 ~~sitav--A--Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~------------------~S---- 96 (362)
T KOG0294|consen 43 AGSITAL--A--VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPP------------------LS---- 96 (362)
T ss_pred ccceeEE--E--ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCC------------------cc----
Confidence 3566333 3 36889999999999999999999988888888777776666655 11
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
.+.|++|+.||.|.+|+.....++..+ ++|.+.|+.++.+|.|++.++.+.|+.++.||+-+|+.-..++-. ...
T Consensus 97 ---~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~a 171 (362)
T KOG0294|consen 97 ---KSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKA 171 (362)
T ss_pred ---hhheeeecCCCcEEEEEcCCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-Ccc
Confidence 236899999999999999999887555 689999999999999999999999999999999998876555532 233
Q ss_pred EEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+.+.|+|.|.+++.+. +.|-+|.+.+......+. ....+.++.|-. +.+|++++ +|+.|.+||....... ..
T Consensus 172 t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~-~~~L~vG~-d~~~i~~~D~ds~~~~----~~ 244 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE-NPKRILCATFLD-GSELLVGG-DNEWISLKDTDSDTPL----TE 244 (362)
T ss_pred eeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh-ccccceeeeecC-CceEEEec-CCceEEEeccCCCccc----ee
Confidence 5599999999888777 899999998877665554 335567777754 56788887 6999999999885533 34
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
...|...+-.+..+. .|++.+|++++.||.|+|||+....
T Consensus 245 ~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 245 FLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eecchhheeeeEEEe----cCCceEEEEeccCceEEEEEccccc
Confidence 456777777776564 3788999999999999999986553
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=9.4e-24 Score=221.18 Aligned_cols=243 Identities=19% Similarity=0.245 Sum_probs=191.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCC------------------cEEEEeccccccccccccccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------------------QVQTEFADIASTETTSLYGNRLEREHL 64 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~~~~~s~~~~~~~~ 64 (630)
.++| .|+.|+|||++||+||.|+.|.||..... ++...+. +|
T Consensus 69 ~~sv--~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-----------------~H- 128 (942)
T KOG0973|consen 69 DGSV--NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-----------------GH- 128 (942)
T ss_pred cCce--eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-----------------cC-
Confidence 4678 66699999999999999999999997731 1223333 33
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI 144 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iw 144 (630)
..++..+.|.|. +.++++++.|++|.|||..+.+.+ +...+|.+.|-++.|.|-|++|++-+.|++|++|
T Consensus 129 ~~DV~Dv~Wsp~---------~~~lvS~s~DnsViiwn~~tF~~~-~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvw 198 (942)
T KOG0973|consen 129 DSDVLDVNWSPD---------DSLLVSVSLDNSVIIWNAKTFELL-KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVW 198 (942)
T ss_pred CCccceeccCCC---------ccEEEEecccceEEEEccccceee-eeeecccccccceEECCccCeeeeecCCceEEEE
Confidence 335667777764 789999999999999999999666 5556899999999999999999999999999999
Q ss_pred eCCCCceeEEeecC------CCCeEEEEEccCCCEEEEeC------CeEEEEECCCCceeeEeecCCCCeEEEEEeeC--
Q 006808 145 DPLTGSLLGKFRAS------TKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-- 210 (630)
Q Consensus 145 d~~~~~~~~~~~~~------~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~-- 210 (630)
++.+....+.+..+ ...+..+.|+|||.+|++.. .++.|.+-.+.+.-..|.||.+++.++.|+|.
T Consensus 199 rt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lf 278 (942)
T KOG0973|consen 199 RTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLF 278 (942)
T ss_pred EcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHh
Confidence 98877776665543 23678999999999999975 48999998888888889999999999999972
Q ss_pred ------C-------cE-EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcE
Q 006808 211 ------G-------KY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (630)
Q Consensus 211 ------~-------~~-l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i 276 (630)
| .| ++++|+.|+.|.||.....++. .+...-....+.... |+ |||..|+++|.||+|
T Consensus 279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl---~vi~~lf~~SI~Dms-Ws-----pdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL---FVIHNLFNKSIVDMS-WS-----PDGFSLFACSLDGTV 349 (942)
T ss_pred ccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch---hhhhhhhcCceeeee-Ec-----CCCCeEEEEecCCeE
Confidence 1 12 5666668999999998776644 111111233444444 44 999999999999999
Q ss_pred EEEEcCCc
Q 006808 277 YIWYGQNI 284 (630)
Q Consensus 277 ~iwd~~~~ 284 (630)
.++.....
T Consensus 350 ~~i~Fee~ 357 (942)
T KOG0973|consen 350 ALIHFEEK 357 (942)
T ss_pred EEEEcchH
Confidence 99987543
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=5.7e-25 Score=192.84 Aligned_cols=242 Identities=15% Similarity=0.247 Sum_probs=201.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+.| ..+..+.+....|+++.|-+-+|||.-+|..++.|. |...+..+.|+.+
T Consensus 59 kgav--w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d------------------------ 111 (334)
T KOG0278|consen 59 KGAV--WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD------------------------ 111 (334)
T ss_pred Ccce--eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc------------------------
Confidence 3567 566788888889999999999999999999988775 4444444444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
...|++|+.+.-++|||++..+....-..+|++.|..+.|....+.|++++.|++|++||.+++..++++. ...+|
T Consensus 112 ---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~V 187 (334)
T KOG0278|consen 112 ---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPV 187 (334)
T ss_pred ---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCC
Confidence 67799999999999999998877656667999999999999988899999999999999999999999988 46789
Q ss_pred EEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+++.++++|++|.++. +.|.+||..+...++.+. -...|.+.+++|+...+++++ .|..++.||..++... ..+
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi---~~~ 262 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEI---GSY 262 (334)
T ss_pred cceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecC-cceEEEEEeccCCcee---eec
Confidence 9999999999999998 799999999998888876 456789999999998877777 7999999999999865 223
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
..+|.+ .+.|+-|+ |+|...++|++||+|+||....++.
T Consensus 263 nkgh~g-pVhcVrFS-----PdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFG-PVHCVRFS-----PDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCC-ceEEEEEC-----CCCceeeccCCCceEEEEEecCCCc
Confidence 334444 44566676 9999999999999999998765543
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.8e-23 Score=176.40 Aligned_cols=245 Identities=20% Similarity=0.283 Sum_probs=189.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEE-----EEecccccccccccccccccccccccceeeEEecccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
.+.| .|.+|||+|+++|+|++|.+|++.-.....+. .+|.-|.+.+..++|-.+ .
T Consensus 89 kgsi--yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------------~ 148 (350)
T KOG0641|consen 89 KGSI--YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------------P 148 (350)
T ss_pred CccE--EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecC------------------C
Confidence 3567 67799999999999999999999765433322 234444444444443322 2
Q ss_pred cccccccCCcEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 78 RKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
.. ++.+|++++ +|..|++-|..+|+....+ .+|++-|.++- +-+|-.|++|+.|.+|++||++-..++.++.
T Consensus 149 ~s-----~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 149 ES-----GGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred Cc-----CceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 11 145555544 3456888899999887665 48999998873 3368899999999999999999888887754
Q ss_pred c-------CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 157 A-------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 157 ~-------~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
. ....|.++++.|.|++|++|- ....+||++.++.++.|..|+..|.++.|+|...|+++++ .|..|++-
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~iklt 300 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLT 300 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEe
Confidence 2 125799999999999999987 7899999999999999999999999999999999999988 69999999
Q ss_pred EcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|+...-..........+|....+.+.|. |..-.+++.+.|.++.+|-+
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh------~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWH------PQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEec------CccceeeeccCcceEEEecc
Confidence 9876432222234455688888888887 67778889999999999975
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=2.4e-24 Score=201.94 Aligned_cols=233 Identities=16% Similarity=0.217 Sum_probs=194.0
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++|+++ .|.+++.++++++.|+.+++|++...+..+++.+|...+.+..|...
T Consensus 220 g~it~~--d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~------------------------- 272 (459)
T KOG0288|consen 220 GNITSI--DFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS------------------------- 272 (459)
T ss_pred CCccee--eecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcc-------------------------
Confidence 578445 99999999999999999999999999999999988776665544432
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
...+++|+.|.+|++||+....+..+++.+ +.+.+|..+ ...+++|-.|++|++||+++..+......+. .|+
T Consensus 273 --~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vt 345 (459)
T KOG0288|consen 273 --HSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVT 345 (459)
T ss_pred --ccceeeccccchhhhhhhhhhheecccccc--ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-cee
Confidence 333899999999999999999888777644 567777765 4568899999999999999999999988665 899
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC----CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
++..+++|..|.+++ .++.++|+++......+... ....+.+.|||++.|+++|+ .||.|+||++.+++..
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE-- 422 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLE-- 422 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccCceEE--
Confidence 999999999999988 79999999998877776432 23488999999999999988 5999999999999854
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
......+....+.++.|+ |.|..+++++.++.+.+|
T Consensus 423 -~~l~~s~s~~aI~s~~W~-----~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 -KVLSLSTSNAAITSLSWN-----PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -EEeccCCCCcceEEEEEc-----CCCchhhcccCCcceEec
Confidence 344444444457777777 899999999999999999
No 89
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.1e-22 Score=211.57 Aligned_cols=183 Identities=11% Similarity=0.119 Sum_probs=141.7
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCc--------eeEEeecCCCCe
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS--------LLGKFRASTKGI 162 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v 162 (630)
|+..|.|.+|++.....+..+ .+|.++|.+++|+|+ +.+|++|+.||+|++||+.++. ++..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 445678999998876665444 589999999999996 7899999999999999997642 345678899999
Q ss_pred EEEEEccCCCEE-EEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 163 SCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 163 ~~l~~~p~~~~l-~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+++|+|++..+ ++++ ++|++||+++++.+..+. |...|.+++|+|+|.+|++++ .|+.|++||++++... .
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i---~ 203 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIA---S 203 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEE---E
Confidence 999999988765 5666 899999999998777776 667899999999999998887 6999999999987643 1
Q ss_pred eeeecCCcee-eeeEEecCCccCCCCCEEEEEecCC----cEEEEEcCC
Q 006808 240 VLAMEHPAVF-MDCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQN 283 (630)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~ 283 (630)
.+ ..|.... ..+++. ..+++++.+|++++.|+ .|+|||+++
T Consensus 204 tl-~gH~g~~~s~~v~~--~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 204 SF-HIHDGGKNTKNIWI--DGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EE-ecccCCceeEEEEe--eeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 12 2233322 112221 01227889999988775 799999875
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=9.9e-24 Score=187.00 Aligned_cols=271 Identities=13% Similarity=0.140 Sum_probs=207.7
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
-|++.+ .|+.+|.+|.+|+.|.+..||-..+|+.+.++.+|.+.+.++... |.
T Consensus 11 RplTqi--KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did----------------~~--------- 63 (327)
T KOG0643|consen 11 RPLTQI--KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDID----------------WD--------- 63 (327)
T ss_pred cccceE--EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEec----------------CC---------
Confidence 477455 999999999999999999999988999999999888776643332 32
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-----CCCcEEEEeCC-------CCce
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPL-------TGSL 151 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----~dg~v~iwd~~-------~~~~ 151 (630)
...+++|+.|.++++||+.+|+++..+. ...+|..+.|+++|++++.+. ..+.|.++|++ ...+
T Consensus 64 --s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 64 --SKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred --cceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 5679999999999999999999987774 558899999999999877664 34689999998 4456
Q ss_pred eEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
...+..+...++.+-|.|-+.+|++|. |.|..||+++|. .+..-..|...|+.+.|+|+..++++++ .|.+-++||
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl~D 218 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKLVD 218 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCccceeee
Confidence 778888889999999999999999998 999999999985 4555578999999999999999999988 799999999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CC-------------cEEEEEcCCcccc---cccC
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG-------------VCYIWYGQNIEEL---RNTK 291 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg-------------~i~iwd~~~~~~~---~~~~ 291 (630)
..+-..+ .+.. ....+.+++++ |-..+++.|+. +. ..++|++-.-+.+ +.|.
T Consensus 219 ~~tl~v~-----Kty~-te~PvN~aais-----P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF 287 (327)
T KOG0643|consen 219 VRTLEVL-----KTYT-TERPVNTAAIS-----PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF 287 (327)
T ss_pred ccceeeE-----EEee-ecccccceecc-----cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc
Confidence 9987643 2222 22234455554 65555555443 21 1122332222222 3344
Q ss_pred ceeEEeeccCCCcccccchhhhhhhccccccccC
Q 006808 292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
.+...+. |.|+++ .-.+|+.||.+++
T Consensus 288 GPINsvA----fhPdGk----sYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 288 GPINSVA----FHPDGK----SYSSGGEDGYVRL 313 (327)
T ss_pred cCcceeE----ECCCCc----ccccCCCCceEEE
Confidence 4444554 899999 8899999887665
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=189.90 Aligned_cols=277 Identities=12% Similarity=0.178 Sum_probs=212.3
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+-......+.+++.|.+.+||.+++|.|+..+.+|.++++++.|++. +.++++
T Consensus 155 aa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s---------------------------~~L~lT 207 (481)
T KOG0300|consen 155 AADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS---------------------------GLLLLT 207 (481)
T ss_pred hhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc---------------------------cceEEE
Confidence 44444568889999999999999999999999999998888777765 788899
Q ss_pred EeCCCeEEEEEc------cCC---------------------------------eeeEEccCCCCCCEEEEEEecCCCEE
Q 006808 92 GTGGGDVLALAV------SAG---------------------------------QLKWRLSDCHPGGVSAISFATHGSCI 132 (630)
Q Consensus 92 ~~~~g~v~iwd~------~~~---------------------------------~~~~~~~~~h~~~v~~~~~s~~g~~l 132 (630)
+++|++-.||.. ... .....-+.+|.+.|.+..|-..|+.+
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM 287 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee
Confidence 999999999862 110 00111235799999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEee
Q 006808 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSD 209 (630)
Q Consensus 133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp 209 (630)
++++.|.+..+||+++|..+..+.+|....+.++-+|..+++++++ .+.++||.+.. +.+..|.||+..|+++.|..
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 9999999999999999999999999999999999999999999998 69999999843 35778999999999999998
Q ss_pred CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 210 ~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
+.+ +++++ +|++|++||++..+.. +..+....... -+..+ ..+..|+.--.+..|++||+. |..+..
T Consensus 368 dd~-vVSgS-DDrTvKvWdLrNMRsp----lATIRtdS~~N-Rvavs-----~g~~iIAiPhDNRqvRlfDln-G~RlaR 434 (481)
T KOG0300|consen 368 DDR-VVSGS-DDRTVKVWDLRNMRSP----LATIRTDSPAN-RVAVS-----KGHPIIAIPHDNRQVRLFDLN-GNRLAR 434 (481)
T ss_pred CCc-eeecC-CCceEEEeeeccccCc----ceeeecCCccc-eeEee-----cCCceEEeccCCceEEEEecC-CCcccc
Confidence 765 55655 7999999999987643 22332222222 22332 345566666667789999984 333222
Q ss_pred cCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCc--ceeecc
Q 006808 290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG--VLLPMS 367 (630)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg--~~l~~s 367 (630)
.+.. .-.+|..-|.|++|..+. +-| ++
T Consensus 435 lPrt--------------------------------------------------sRqgHrRMV~c~AW~eehp~cnL-ft 463 (481)
T KOG0300|consen 435 LPRT--------------------------------------------------SRQGHRRMVTCCAWLEEHPACNL-FT 463 (481)
T ss_pred CCcc--------------------------------------------------cccccceeeeeeeccccCccccc-cc
Confidence 2100 011677778888888664 346 89
Q ss_pred ccceecccccee
Q 006808 368 QSLLKSKRGRYV 379 (630)
Q Consensus 368 ~s~d~~~~~w~~ 379 (630)
++.|+.+..|++
T Consensus 464 cGFDR~v~gW~i 475 (481)
T KOG0300|consen 464 CGFDRMVAGWKI 475 (481)
T ss_pred ccccceeeeeEe
Confidence 999999999987
No 92
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.8e-24 Score=197.93 Aligned_cols=241 Identities=15% Similarity=0.284 Sum_probs=188.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..|| ..+.||||.++|++|+.|..+++||+.+|.+.+.+.. + .+..+++++|+|.
T Consensus 269 ~~~V--~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----------------~-~~~S~~sc~W~pD------ 323 (519)
T KOG0293|consen 269 SQPV--SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----------------G-LGFSVSSCAWCPD------ 323 (519)
T ss_pred cCce--EEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----------------C-cCCCcceeEEccC------
Confidence 3578 7779999999999999999999999999998876642 2 3556778999987
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++|+.|+.+..||+..+.. .....-....|.+++.++||+++++.+.|..|++++..+......+. ...+|
T Consensus 324 ---g~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~i 398 (519)
T KOG0293|consen 324 ---GFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPI 398 (519)
T ss_pred ---CceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCce
Confidence 56699999999999999986543 12222223569999999999999999999999999988766554444 45689
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCC--eEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~--v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
++++++.+|+++++.- ..+++||+...+.++.+.||... +-.-+|-.-. .++++| ++|+.|+||+..++++.
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG-SED~kvyIWhr~sgkll-- 475 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG-SEDSKVYIWHRISGKLL-- 475 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEec-CCCceEEEEEccCCcee--
Confidence 9999999999888765 89999999998899999999753 3344565433 455555 58999999999998844
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
..+..+...+.|+.+++ .+..++|+++.||+|+||....
T Consensus 476 ---~~LsGHs~~vNcVswNP----~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 476 ---AVLSGHSKTVNCVSWNP----ADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ---EeecCCcceeeEEecCC----CCHHHhhccCCCCeEEEecCCc
Confidence 34445556667777762 3557899999999999997643
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.1e-22 Score=183.55 Aligned_cols=247 Identities=15% Similarity=0.193 Sum_probs=176.8
Q ss_pred ccceeEeEECC-CCCEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 5 NIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 5 ~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.|.++ +||| ...+++.||+||+||+|+++. |....... ......+.+++|...
T Consensus 29 sIS~l--~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-----------------~~~~~PvL~v~Wsdd------ 83 (347)
T KOG0647|consen 29 SISAL--AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-----------------QSHDGPVLDVCWSDD------ 83 (347)
T ss_pred chhee--EeccccCceEEecccCCceEEEEEecCCcccchhh-----------------hccCCCeEEEEEccC------
Confidence 46444 9999 556777899999999999976 33332110 112345667788765
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC--EEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..+++|+.|+.+++||+.+++.. .+ ..|.++|..+.|-+... .|+|||.|++|+.||++...++.++.. .+
T Consensus 84 ---gskVf~g~~Dk~~k~wDL~S~Q~~-~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-Pe 157 (347)
T KOG0647|consen 84 ---GSKVFSGGCDKQAKLWDLASGQVS-QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PE 157 (347)
T ss_pred ---CceEEeeccCCceEEEEccCCCee-ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cc
Confidence 677999999999999999999764 33 46999999999988665 699999999999999999999988874 45
Q ss_pred CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeE-ee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc---
Q 006808 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-FS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--- 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~-~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~--- 235 (630)
.++++..-..--.++++.+.|.+|+++++..... .. .-.-.+++|+..++....+.++ -+|.+.+..+..+.+.
T Consensus 158 RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 158 RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccCce
Confidence 6777776543333334448999999987653221 11 1234588999988888778887 5899999988875321
Q ss_pred cceeeeeec---CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 236 SASCVLAME---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 236 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
..+|..... ..-+.+..++|. |.-..|++++.||+..+||-+....++
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred eEEEeccCCCCCCceEEecceEee-----cccceEEEecCCceEEEecchhhhhhh
Confidence 122322111 112345556666 888999999999999999976554443
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.1e-24 Score=200.90 Aligned_cols=295 Identities=15% Similarity=0.151 Sum_probs=213.0
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+| +|++++|++++.++++.+|+|.=|++.+|+...-+.... .+.. .|
T Consensus 144 s~--~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k---------~~--------------------- 190 (479)
T KOG0299|consen 144 SV--TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLK---------SH--------------------- 190 (479)
T ss_pred cc--eEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhh---------hc---------------------
Confidence 55 788999999999999999999999999988653221000 0000 00
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+... ... .+|...+.+++.++||++|++|+.|..|.||+.++.+.++.|.+|.+.|.
T Consensus 191 ---------------------~~~~-k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~ 248 (479)
T KOG0299|consen 191 ---------------------GNPL-KESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS 248 (479)
T ss_pred ---------------------cCCC-CcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee
Confidence 0000 111 27999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+++|-.....+++++ ++|++|++.....+.++.||...|.+|....-++.+-+++ .|+++++|++...... ++
T Consensus 249 ~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg-rDrT~rlwKi~eesql----if 323 (479)
T KOG0299|consen 249 SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG-RDRTVRLWKIPEESQL----IF 323 (479)
T ss_pred eeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc-ccceeEEEecccccee----ee
Confidence 999988767777776 8999999999989999999999999998887777666665 6999999999654422 33
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEE-----------eeccCCCcccccch
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL-----------SSSEDVNSKSQKSA 310 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 310 (630)
..+...+.|++|- +..++++|+.+|.|.+|++...+++...+..... +.......+...
T Consensus 324 --rg~~~sidcv~~I------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-- 393 (479)
T KOG0299|consen 324 --RGGEGSIDCVAFI------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-- 393 (479)
T ss_pred --eCCCCCeeeEEEe------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc--
Confidence 2345566777773 6788999999999999999887776543221110 111222334443
Q ss_pred hhhhhhccccccccCCceeEEEEE-cCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccc
Q 006808 311 TAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 311 ~~~i~~~~~d~~~~~~~~~~~~~~-g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (630)
.+++|+.+|.+++| ... |......+..+. -.+.|++++|+++|+.|++..+.-..+-.|
T Consensus 394 --L~asGS~~G~vrLW-----~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 394 --LLASGSWSGCVRLW-----KIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred --eEEecCCCCceEEE-----EecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 78888888876664 332 222223333333 557799999999999773444444444334
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.6e-23 Score=212.56 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=157.7
Q ss_pred CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCc
Q 006808 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK 190 (630)
Q Consensus 114 ~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~ 190 (630)
.||.+.|.++.|+.+ ++|++++.|.+|++|++....|++.|. |...|+|++|+| |.+++++|+ |.|+||++...+
T Consensus 366 ~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 366 KGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence 489999999999975 589999999999999999999999999 899999999999 788999999 999999998776
Q ss_pred eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeee-----ecCCceeeeeEEecCCccCCCCC
Q 006808 191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-----MEHPAVFMDCRCIDNGGVDDAGL 265 (630)
Q Consensus 191 ~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 265 (630)
.+. ...-..-|++++|.|+|++.++|+ .+|.+++|+....+......+.. ..+. .+....+++ .+..
T Consensus 444 Vv~-W~Dl~~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p-----~~~~ 515 (712)
T KOG0283|consen 444 VVD-WNDLRDLITAVCYSPDGKGAVIGT-FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFP-----GDPD 515 (712)
T ss_pred eEe-ehhhhhhheeEEeccCCceEEEEE-eccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecC-----CCCC
Confidence 554 333457899999999999999988 59999999998876542111111 1122 455566664 3344
Q ss_pred EEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEE
Q 006808 266 YVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI 345 (630)
Q Consensus 266 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (630)
.|++.+.|.+|+|||+...+.+..++.....
T Consensus 516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~------------------------------------------------- 546 (712)
T KOG0283|consen 516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT------------------------------------------------- 546 (712)
T ss_pred eEEEecCCCceEEEeccchhhhhhhcccccC-------------------------------------------------
Confidence 6888899999999999766665544422100
Q ss_pred eccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 346 LVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 346 ~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..-....|+.||++| +++|.|.-+++|+.
T Consensus 547 ----~SQ~~Asfs~Dgk~I-Vs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 547 ----SSQISASFSSDGKHI-VSASEDSWVYIWKN 575 (712)
T ss_pred ----CcceeeeEccCCCEE-EEeecCceEEEEeC
Confidence 112455688899999 99999999999986
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.4e-22 Score=182.20 Aligned_cols=244 Identities=14% Similarity=0.189 Sum_probs=190.0
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCc
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHK 190 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~ 190 (630)
...+.|.++.|+++|.++++++.|.++++||..++++++++..++..+..++|......++.++ .+|+..++.+.+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 3567899999999999999999999999999999999999998888999999987777777666 499999999999
Q ss_pred eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEE
Q 006808 191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (630)
Q Consensus 191 ~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 270 (630)
.++-|.||...|.+++.+|-+..+++++ .|++|++||++..+.+ ..+..... .+++|. |.|.++|++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S-~D~tvrLWDlR~~~cq---g~l~~~~~----pi~AfD-----p~GLifA~~ 158 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSS-LDKTVRLWDLRVKKCQ---GLLNLSGR----PIAAFD-----PEGLIFALA 158 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecc-cCCeEEeeEecCCCCc---eEEecCCC----cceeEC-----CCCcEEEEe
Confidence 9999999999999999999999999988 6999999999977644 22222222 345565 999999999
Q ss_pred ecCCcEEEEEcCCccc--ccccCce---eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEE
Q 006808 271 SETGVCYIWYGQNIEE--LRNTKAT---KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI 345 (630)
Q Consensus 271 s~dg~i~iwd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (630)
...+.|++||++.... ...+... ...+ ....|+|+++ +|+.+...+.++ ++.++... ..+++
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew-~~l~FS~dGK----~iLlsT~~s~~~-----~lDAf~G~---~~~tf 225 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEW-TDLEFSPDGK----SILLSTNASFIY-----LLDAFDGT---VKSTF 225 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccce-eeeEEcCCCC----EEEEEeCCCcEE-----EEEccCCc---EeeeE
Confidence 9888999999887632 2222211 2222 2334899999 888887765333 33344332 33445
Q ss_pred eccCCCc---EEEeecCCcceeeccccceeccccceeccceee
Q 006808 346 LVNSGED---INLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTA 385 (630)
Q Consensus 346 ~~h~~~v---~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~ 385 (630)
.++.+.- ....|+|||+++ ++|+.|+++.+|+++.+..+
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fv-l~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFV-LSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred eeccCCCCcceeEEECCCCcEE-EEecCCCcEEEEEcCCCcEe
Confidence 5554443 788999999999 99999999999999765333
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=7.3e-23 Score=196.96 Aligned_cols=291 Identities=13% Similarity=0.150 Sum_probs=210.0
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee----eEEccCCCCCCEEEEEEecCCCEEEEEeCCCc
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSCIYSAGADGM 140 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~----~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 140 (630)
...++.++..+. |..+++|+.|.+|++||++.-.. ...+.......|.++.|++.|..|++.+....
T Consensus 167 tk~Vsal~~Dp~---------GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 167 TKIVSALAVDPS---------GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ceEEEEeeecCC---------CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 445666666555 77799999999999999975432 22334445567999999999999999988889
Q ss_pred EEEEeCCCCceeEE-------------eecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCce-eeEee-----cC
Q 006808 141 VCEIDPLTGSLLGK-------------FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQKFS-----GH 198 (630)
Q Consensus 141 v~iwd~~~~~~~~~-------------~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~-~~~~~-----~h 198 (630)
.+++|-. |..+.. -++|...++|.+|+|..+ .+++++ |++++||+.+.+. ...++ +.
T Consensus 238 akl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 238 AKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 9999944 433222 246888999999999643 455665 9999999987642 23332 23
Q ss_pred CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 199 ~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
.-+++.++|+|+|+.+++++ .||.|.+|+..+.......++......+..++++.|+ ++|++|++-+.|+.+++
T Consensus 317 Rv~~tsC~~nrdg~~iAagc-~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGC-LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCceeeecCCCcchhhhcc-cCCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceee
Confidence 45789999999999998888 6999999998766544334444444455678889898 99999999999999999
Q ss_pred EEcCCccc-ccccCcee-EEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEe
Q 006808 279 WYGQNIEE-LRNTKATK-ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN 356 (630)
Q Consensus 279 wd~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~ 356 (630)
||++..+. +....... .--.....|+|+.+ .|++|..-..-.. .+ .+..|.......++++-.....|..+.
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k----li~TGtS~~~~~~-~g-~L~f~d~~t~d~v~ki~i~~aSvv~~~ 464 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK----LILTGTSAPNGMT-AG-TLFFFDRMTLDTVYKIDISTASVVRCL 464 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCce----EEEecccccCCCC-Cc-eEEEEeccceeeEEEecCCCceEEEEe
Confidence 99987753 22211111 01112233899988 8888877421111 22 455565666667777778888899999
Q ss_pred ecCCcceeeccccceeccccce
Q 006808 357 CSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 357 ~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
|+|.=..| +.|+.||+++++-
T Consensus 465 WhpkLNQi-~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 465 WHPKLNQI-FAGSGDGTAHVYY 485 (641)
T ss_pred ecchhhhe-eeecCCCceEEEE
Confidence 99998888 7788899988763
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.8e-22 Score=180.51 Aligned_cols=223 Identities=14% Similarity=0.171 Sum_probs=174.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC--EEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.++++|+.|.+|+|||+++......+. .|.+.|+++.|.+.-. +|++|+.||.|.+|+.....++.++++|.+.|+
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT 131 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence 6789999999999999999988886665 5999999999998654 899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
.++++|.|++.++.+ +.+++||+-+|+.-..++- ....+.+.|+|.|.+|+.++ -+.|-+|.+...... .
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~ 203 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----R 203 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----h
Confidence 999999999877766 7999999999886544432 22334599999999988877 446999999886533 1
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
.+..+.. +.++.| -++..|++|..|+.|.+||..++..+..
T Consensus 204 ~i~~~~r-~l~~~~------l~~~~L~vG~d~~~i~~~D~ds~~~~~~-------------------------------- 244 (362)
T KOG0294|consen 204 EIENPKR-ILCATF------LDGSELLVGGDNEWISLKDTDSDTPLTE-------------------------------- 244 (362)
T ss_pred hhhcccc-ceeeee------cCCceEEEecCCceEEEeccCCCcccee--------------------------------
Confidence 2222322 333434 3688999999999999999865433211
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEe--ecCCcceeeccccceeccccceec
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN--CSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~--~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+.+|...|-.+. -.|++.+| +|.|.||.|++|++.
T Consensus 245 -----------------------~~AH~~RVK~i~~~~~~~~~~l-vTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 245 -----------------------FLAHENRVKDIASYTNPEHEYL-VTASSDGFIKVWDID 281 (362)
T ss_pred -----------------------eecchhheeeeEEEecCCceEE-EEeccCceEEEEEcc
Confidence 224555555554 24677888 999999999999984
No 99
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=2.8e-22 Score=180.07 Aligned_cols=250 Identities=12% Similarity=0.044 Sum_probs=176.4
Q ss_pred CCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccC---CCEEEEeC--CeEEEEECC
Q 006808 114 DCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCS 187 (630)
Q Consensus 114 ~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~---~~~l~~~~--g~i~lwd~~ 187 (630)
.+|...|.++.|-| |...|.+++-|.++++||..+.+....|+ -.+.|++-+++|- ..++|+|. -.|++.|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47888999999999 66788999999999999999999888888 4567899999983 34566665 589999999
Q ss_pred CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc-c--------ccee-eeeecCCceeeeeEEecC
Q 006808 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-Q--------SASC-VLAMEHPAVFMDCRCIDN 257 (630)
Q Consensus 188 ~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~-~--------~~~~-~~~~~~~~~~~~~~~~~~ 257 (630)
+|....++.||...|.++.|+|...+++++++.||.|++||++...- . .... ......+..-+..++|.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t- 255 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT- 255 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec-
Confidence 99999999999999999999999999888888999999999986520 0 0001 11111122233445555
Q ss_pred CccCCCCCEEEEEecCCcEEEEEcCCcccc-cccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcC
Q 006808 258 GGVDDAGLYVLAISETGVCYIWYGQNIEEL-RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (630)
Q Consensus 258 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~ 336 (630)
.++.++++++.|.++++|+..+|+.- +..-+...... .++.- .+-++..+-.+....+.-+..+..
T Consensus 256 ----Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~----~~~~~-----~~~~~~s~vfv~~p~~~~lall~~ 322 (397)
T KOG4283|consen 256 ----SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT----TSFAV-----HIQSMDSDVFVLFPNDGSLALLNL 322 (397)
T ss_pred ----ccchhhhhccCccceEEeecccCccccccccccccccc----ccceE-----EEeecccceEEEEecCCeEEEEEc
Confidence 79999999999999999998887532 22111100000 00000 011222221111111122223333
Q ss_pred ccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.....+..+.+|...+.|.++.|+-+.. .+|+.|+++..|..
T Consensus 323 ~sgs~ir~l~~h~k~i~c~~~~~~fq~~-~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 323 LEGSFVRRLSTHLKRINCAAYRPDFEQC-FTGDMNGNIYMWSP 364 (397)
T ss_pred cCceEEEeeecccceeeEEeecCchhhh-hccccCCccccccc
Confidence 4456667788998899999999999998 99999999999954
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.2e-22 Score=191.69 Aligned_cols=254 Identities=17% Similarity=0.273 Sum_probs=182.2
Q ss_pred cccceeEeEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccc-cccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.|+.+ .+-|.. ..+|+++..+.|.|||..+..-.....+ .+.|++ ..||.. ....+.|++..
T Consensus 125 gEVnRa--RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------~~~Pdl~L~gH~~-eg~glsWn~~~---- 189 (422)
T KOG0264|consen 125 GEVNRA--RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------ECRPDLRLKGHEK-EGYGLSWNRQQ---- 189 (422)
T ss_pred ccchhh--hhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------cCCCceEEEeecc-ccccccccccc----
Confidence 344334 666754 5777888899999999865432221110 111110 235554 24458888776
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCee------eEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCC--CCcee
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL--TGSLL 152 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~------~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~--~~~~~ 152 (630)
...+++|+.++.|++||+..... ....+.+|...|..++|++ +...|++++.|+.+.|||++ +.++.
T Consensus 190 ----~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 190 ----EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred ----ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence 66799999999999999975432 3455678999999999999 55678899999999999999 56677
Q ss_pred EEeecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 153 GKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
....+|.++|.|++|+| ++..||+|+ ++|.+||+++- +++.++.+|...|.+|.|+|....++++++.|+.+.+||
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 77889999999999999 566778887 89999999985 468889999999999999998765555555799999999
Q ss_pred cCCCccc---------cceeeeeec-CCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcC
Q 006808 229 TDGVKKQ---------SASCVLAME-HPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 229 ~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~ 282 (630)
+..-... +...++..+ |...+.... |+ |.. -.|++.+.|+.++||...
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs-Wn-----p~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS-WN-----PNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCccccccccc-CC-----CCCCeEEEEecCCceEEEeecc
Confidence 8653211 011223322 333333333 33 655 456778899999999864
No 101
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7.5e-23 Score=206.14 Aligned_cols=238 Identities=14% Similarity=0.224 Sum_probs=179.4
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcE----EEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQV----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
++..++-..++.++. ..++||.+..... ...+++ +......+..+.|.... .
T Consensus 45 Is~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~---------------kqn~~~S~~DVkW~~~~--------~ 100 (839)
T KOG0269|consen 45 ISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKT---------------KQNKFYSAADVKWGQLY--------S 100 (839)
T ss_pred EeecCCcceeEEecc-cceeeEeeCcccCCcceeeeccc---------------ccceeeehhhcccccch--------h
Confidence 366777777777765 3677776653321 111110 12223345567888655 7
Q ss_pred cEEEEEeCCCeEEEEEccC--CeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 87 SLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~--~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
++|++++.+|.|.+||+.. .......+..|...|+++.|++ ...+|++||.||+|++||++..+...++.+....|.
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence 8999999999999999987 2222245568999999999998 455789999999999999999999999998888999
Q ss_pred EEEEcc-CCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 164 CMAVSS-DGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 164 ~l~~~p-~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+.|+| .+.+++++. |.+++||++... +...+..|.++|.++.|+|++.+|++|| .|+.|+||++.+.+.. .
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~---~ 256 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAK---P 256 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCcc---c
Confidence 999999 567777776 999999998754 6778899999999999999999999998 7999999999987654 2
Q ss_pred eeeecCCceeeeeEEecCCccCCCC-CEEEEEec--CCcEEEEEcC
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISE--TGVCYIWYGQ 282 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~--dg~i~iwd~~ 282 (630)
...+.... .+..+.|. |.. .+|++++. |-.|+|||+.
T Consensus 257 ~~tInTia-pv~rVkWR-----P~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 257 KHTINTIA-PVGRVKWR-----PARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred eeEEeecc-eeeeeeec-----cCccchhhhhhccccceEEEEeec
Confidence 33333333 34445554 554 45666654 6789999984
No 102
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.2e-22 Score=190.89 Aligned_cols=281 Identities=16% Similarity=0.171 Sum_probs=208.0
Q ss_pred EeeCC-CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC-eEE
Q 006808 22 ICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG-DVL 99 (630)
Q Consensus 22 s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g-~v~ 99 (630)
+++.| ..+.+||+.+|.....+++..... +|.... .++.+++++.... .|.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~-----------~~sl~~----------------l~~~yllsaq~~rp~l~ 64 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ-----------AASLTA----------------LNNEYLLSAQLKRPLLH 64 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCccccc-----------chhhhh----------------hchhheeeecccCcccc
Confidence 34444 459999999999998887541110 000000 0144556665544 489
Q ss_pred EEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-
Q 006808 100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178 (630)
Q Consensus 100 iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~- 178 (630)
+|.+.......... --.++|.+++-+|.|.+++.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+-||.++++|+
T Consensus 65 vw~i~k~~~~~q~~-v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 65 VWEILKKDQVVQYI-VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred ccccCchhhhhhhc-ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 99988765543221 2457899999999999999988999999999999999999999999999999999999999999
Q ss_pred -CeEEEEECC---------CCceeeEeecCCCCeEEEEEeeC--CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 179 -GQLKTFNCS---------DHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 179 -g~i~lwd~~---------~~~~~~~~~~h~~~v~~l~~sp~--~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|.|.+|.+. +-+++..|..|+-+|+.+...+. ..++++++ .|+++++||+..+... ..+..+
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL-----lti~fp 217 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL-----LTITFP 217 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee-----EEEecC
Confidence 899999763 23567889999999999988764 35788887 7999999999998744 222222
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCC
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 326 (630)
..+.++... |.+..+.+|+.+|.|.+.++......+.. +.
T Consensus 218 -~si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~~~------v~---------------------------- 257 (476)
T KOG0646|consen 218 -SSIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQSAG------VN---------------------------- 257 (476)
T ss_pred -CcceeEEEc-----ccccEEEecCCcceEEeeehhcCCccccc------cc----------------------------
Confidence 334555565 88999999999999999886433210000 00
Q ss_pred ceeEEEEEcCccCceeeEEeccCC--CcEEEeecCCcceeeccccceeccccceeccc
Q 006808 327 SVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
...+......+..+.+|.+ +|.|++++-||.+| +||+.|+.+.+|++.++
T Consensus 258 -----~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL-lSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 258 -----QKGRHEENTQINVLVGHENESAITCLAISTDGTLL-LSGDEDGKVCVWDIYSK 309 (476)
T ss_pred -----ccccccccceeeeeccccCCcceeEEEEecCccEE-EeeCCCCCEEEEecchH
Confidence 0000112334556778888 89999999999999 99999999999999765
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=8.6e-22 Score=185.96 Aligned_cols=237 Identities=17% Similarity=0.196 Sum_probs=195.3
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..+.|+|+...+++++.|-.|+||......+......|...+......|. +.+
T Consensus 265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t---------------------------geY 317 (506)
T KOG0289|consen 265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT---------------------------GEY 317 (506)
T ss_pred EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccC---------------------------CcE
Confidence 55699999999999999999999999888777777777777766555555 899
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCC-CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
|++++.+|...+.|++++..+...... ..-.+++.+|+|||-.|.+|..||.|++||+.++..+..|.+|.++|..++|
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEe
Confidence 999999999999999999887555421 2245899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
+.+|.+|+++. +.|++||++.-+...++.... .++.++.|.+.|.+|+.+| .+=+|++++-.+.. +.++..+.
T Consensus 398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~---W~~~~~~~ 473 (506)
T KOG0289|consen 398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKS---WTEIKELA 473 (506)
T ss_pred ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEeccccc---ceeeehhh
Confidence 99999999998 779999999988888776433 4799999999999999987 35555555533332 33555555
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
......+.++|. ....++++++.|..++++.+
T Consensus 474 ~~sg~st~v~Fg-----~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 474 DHSGLSTGVRFG-----EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hcccccceeeec-----ccceEEeeccchhheEEeec
Confidence 445566778887 77899999999999888754
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=5.3e-22 Score=197.82 Aligned_cols=267 Identities=18% Similarity=0.257 Sum_probs=196.5
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..|+.+ ++. ++..++++|.||++++|+-..++.+. .+.+ |.+...+.+++.+.+
T Consensus 15 ~DVr~v--~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-----------------~~g~i~~~i~y~e~~---- 70 (745)
T KOG0301|consen 15 SDVRAV--AVT-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEG-----------------PKGFIANSICYAESD---- 70 (745)
T ss_pred cchhee--Eec-CCeEEeecCCCCceeeeeccCcccccceeccc-----------------Ccceeeccceecccc----
Confidence 345444 443 44589999999999999976555443 2332 222222224444322
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+..+++|+.|+.|.+|.+.+......+ .+|...|+++....++. +++||.|.++++|-. +++...+.+|...
T Consensus 71 ----~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as 142 (745)
T KOG0301|consen 71 ----KGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS 142 (745)
T ss_pred ----CcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchh
Confidence 556899999999999999998888555 68999999999877776 999999999999974 6777789999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
|.++++-|.+ .+++|+ .+|++|.- ++.+++|.+|..-|+++++-+++. |++++ .||.|+.|++... +
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg~Ir~w~~~ge------~ 211 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDGSIRLWDLDGE------V 211 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCceEEEEeccCc------e
Confidence 9999999988 666766 79999985 788999999999999999998764 56777 7999999999544 3
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc-eeEEeeccCCCcccccchhhhhhhcc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-TKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
++....+..++.++... +++..|+++++|++++||+.....+.-.++. ..+.+.+ -..+ -|++|+
T Consensus 212 l~~~~ghtn~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~----L~Ng-----DIvvg~ 277 (745)
T KOG0301|consen 212 LLEMHGHTNFVYSISMA-----LSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKV----LLNG-----DIVVGG 277 (745)
T ss_pred eeeeeccceEEEEEEec-----CCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEE----eeCC-----CEEEec
Confidence 44544444454444433 6789999999999999999873333333332 2233332 1222 689999
Q ss_pred ccccccCCc
Q 006808 319 LQDIVKPAS 327 (630)
Q Consensus 319 ~d~~~~~~~ 327 (630)
+||.++++.
T Consensus 278 SDG~VrVfT 286 (745)
T KOG0301|consen 278 SDGRVRVFT 286 (745)
T ss_pred cCceEEEEE
Confidence 999877754
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.8e-22 Score=173.22 Aligned_cols=237 Identities=16% Similarity=0.238 Sum_probs=177.2
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCC---cEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
...--|+.||||+.|++|+|+.+.+. +.+.++.+|.+++..+.|..+ . .+.+
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP------------------k-------~G~i 72 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP------------------K-------FGTI 72 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc------------------c-------cCcE
Confidence 34446899999999999999998754 457788887776665544432 1 1899
Q ss_pred EEEEeCCCeEEEEEccCCeeeE-EccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCC---ceeEEeecCCCCe
Q 006808 89 LVLGTGGGDVLALAVSAGQLKW-RLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGI 162 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~-~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v 162 (630)
|++|+.||.|.||.-.+++-.. .....|.+.|++++|.|. |-.|++++.||.|.+.+++.. ...+....|.-.|
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 9999999999999998885321 122469999999999995 456899999999999998754 2223356788899
Q ss_pred EEEEEccC---C-----------CEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEeeCC----cEEEEEeeC
Q 006808 163 SCMAVSSD---G-----------KMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNG----KYVLSSAVG 220 (630)
Q Consensus 163 ~~l~~~p~---~-----------~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~----~~l~~~~~~ 220 (630)
++++|.|. | +.|++|+ +.|+||+..+++ .-+++.+|...|+.++|.|.- .++++++ .
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-q 231 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS-Q 231 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec-C
Confidence 99999985 4 5688887 899999988764 345688999999999999964 4677776 7
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
||++.||........ ....+.-..+..+..+ .|+ +.|+.|+.++.|+.+.+|.-
T Consensus 232 Dg~viIwt~~~e~e~-wk~tll~~f~~~~w~v-SWS-----~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEP-WKKTLLEEFPDVVWRV-SWS-----LSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CCcEEEEEecCccCc-ccccccccCCcceEEE-EEe-----ccccEEEEecCCcEEEEEEe
Confidence 999999988743221 1222222223333333 343 78999999999999999963
No 106
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.2e-22 Score=193.07 Aligned_cols=288 Identities=14% Similarity=0.182 Sum_probs=213.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++.|+++ +.+|.|.+||+|+.||+|+||.+.+|.|+.++.- ...+.|++|+|...
T Consensus 400 tg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-------------------d~~I~~vaw~P~~~---- 454 (733)
T KOG0650|consen 400 TGLVRSI--SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-------------------DSEIRSVAWNPLSD---- 454 (733)
T ss_pred CCeEEEE--EecCCcceeeecCCCCcEEEEEeecceEEEEEee-------------------cceeEEEEecCCCC----
Confidence 4667444 8889999999999999999999999999987752 23566777776542
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC------------------------------------e-eeEEccCCCCCCEEEEEE
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG------------------------------------Q-LKWRLSDCHPGGVSAISF 125 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~------------------------------------~-~~~~~~~~h~~~v~~~~~ 125 (630)
..+|+++.... +.|.+..-| + .+ .+...|...|..+.|
T Consensus 455 ---~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v-~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 455 ---LCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGV-CIVIKHPKSIRQVTW 529 (733)
T ss_pred ---ceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccce-EEEEecCCccceeee
Confidence 23333333322 444333211 0 01 111247789999999
Q ss_pred ecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCC
Q 006808 126 ATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGA 201 (630)
Q Consensus 126 s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~ 201 (630)
+..|.+|++...+ ..|.|+++...+....|+...+.|.++.|+|...+|++++ ..|++||+.....++.+......
T Consensus 530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw 609 (733)
T KOG0650|consen 530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW 609 (733)
T ss_pred ecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee
Confidence 9999999987653 4789999988777777877788999999999999999998 89999999998888887767788
Q ss_pred eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 202 v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|..++.+|.|..|+.++ .|+.+..+|+.-.... ...+.++...++.+.|. +.=.++++|+.||.+.||..
T Consensus 610 iS~msihp~GDnli~gs-~d~k~~WfDldlsskP----yk~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSKP----YKTLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeecCCCCeEEEec-CCCeeEEEEcccCcch----hHHhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEee
Confidence 99999999999999988 6999999999876543 34455666666667766 66678999999999999875
Q ss_pred CCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCC----cEEEee
Q 006808 282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE----DINLNC 357 (630)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~----v~~~~~ 357 (630)
.-.+-+-.. .....+..+.+|... |+.+.|
T Consensus 680 ~VY~Dl~qn----------------------------------------------pliVPlK~L~gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 680 MVYNDLLQN----------------------------------------------PLIVPLKRLRGHEKTNDLGVLDTIW 713 (733)
T ss_pred eeehhhhcC----------------------------------------------CceEeeeeccCceeecccceEeecc
Confidence 322211100 011122234455444 889999
Q ss_pred cCCcceeeccccceeccccc
Q 006808 358 SQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 358 s~dg~~l~~s~s~d~~~~~w 377 (630)
+|.-..| +|+++|+++|+|
T Consensus 714 HP~qpWL-fsAGAd~tirlf 732 (733)
T KOG0650|consen 714 HPRQPWL-FSAGADGTIRLF 732 (733)
T ss_pred cCCCceE-EecCCCceEEee
Confidence 9999999 999999999998
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=199.45 Aligned_cols=235 Identities=14% Similarity=0.223 Sum_probs=187.3
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|.|+|+++.+|+.||.|++|+..+-. ....+.. .+..+.+++- . .+.
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~------------------~g~~v~~ia~---~--------s~~ 68 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI------------------SGELVSSIAC---Y--------SNH 68 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc------------------cCceeEEEee---c--------ccc
Confidence 45999999999999999999999876542 1111110 1112222222 1 567
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
|++|+.+++|.+|....++.- .++...+-++++++|+.+|++++.||.|-.|++.++.+......+++|.++|.++.|+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~-~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEED-TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred eEEeeccceEEEeeCCCCCcc-ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence 999999999999999888764 2333466799999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecC--------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
|.+.+||+.+ |.|++||+.++.+..++.+- ...+..++|+|+|..|++.+ -|+.|++|+.......
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~--- 223 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQ--- 223 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeh---
Confidence 9999999987 99999999999877666432 34577899999987777777 4999999999887654
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
..+...+....+.++.|+ |.|.|||+++.+|.|.|||.++
T Consensus 224 f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWS-----PNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEc-----CCCcEEeeeccCCcEEEEeccc
Confidence 333444444446667776 9999999999999999999985
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-22 Score=204.94 Aligned_cols=235 Identities=15% Similarity=0.218 Sum_probs=181.4
Q ss_pred EECC-CCCEEEEeeCCCcEEEEECCC---CcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 12 SFSP-ALDYFAICSGDARIKIWDTLK---GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 12 ~fs~-dg~~las~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.|+. +.++||+|+..|.|.+||+.. .+.+..|..|. ..++++.|++.. ..
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~------------------Rs~~~ldfh~te--------p~ 147 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE------------------RSANKLDFHSTE--------PN 147 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhc------------------cceeeeeeccCC--------cc
Confidence 5654 457999999999999999976 34444555443 345677777776 67
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM 165 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l 165 (630)
+|++|+.||.|++||++..+...++. +....|+++.|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred EEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence 89999999999999999988875654 6788999999999 6778999999999999999865 6777899999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeec-CCCCeEEEEEeeCCcEEEEEee--CCCeEEEEEcCCCccccceee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.|+|++.+||+|+ +.|+|||..+++.-....- ...+|.++.|-|..++.+++++ .|-.|+|||++..-.+ .
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP----~ 302 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP----Y 302 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc----c
Confidence 9999999999999 8999999987654333332 3468999999998876555443 3668999999886543 2
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
..+..+...++.++|. +.|...+.+++.||.+..-..
T Consensus 303 ~t~~eH~~~vt~i~W~----~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 303 ATFLEHTDSVTGIAWD----SGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred eeeeccCccccceecc----CCCceeeEeecCccHHHHhhh
Confidence 3333444455556664 145678899999998764433
No 109
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=5.8e-21 Score=169.02 Aligned_cols=226 Identities=15% Similarity=0.262 Sum_probs=187.8
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+.|..+ +|+| ...+||+++.|.+|++||..+++++..+.... ...-+.|.|.
T Consensus 65 ~svdql--~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-------------------eni~i~wsp~------ 117 (313)
T KOG1407|consen 65 DSVDQL--CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-------------------ENINITWSPD------ 117 (313)
T ss_pred cchhhh--eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-------------------cceEEEEcCC------
Confidence 345444 7777 45799999999999999999999988765322 1223556655
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+++++..+..|.+.|.++.+.+... .....+..++|+-++.+|+.....|+|.|.....-+++..+++|....
T Consensus 118 ---g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC 192 (313)
T KOG1407|consen 118 ---GEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC 192 (313)
T ss_pred ---CCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence 788999999999999999988876554 345678899999888888888888999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.|+.|+|+|+++|+|+ ..+.+||+..--+++.+..+.-+|+.++||.+|++|++++ +|..|-|=++.++.. +
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~IDIA~vetGd~-----~ 266 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFIDIAEVETGDR-----V 266 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEEeEecccCCe-----E
Confidence 9999999999999999 6899999999889999999999999999999999999987 799999999999873 4
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecC
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 273 (630)
..+++.+....+.|. |...+||-++.|
T Consensus 267 ~eI~~~~~t~tVAWH------Pk~~LLAyA~dd 293 (313)
T KOG1407|consen 267 WEIPCEGPTFTVAWH------PKRPLLAYACDD 293 (313)
T ss_pred EEeeccCCceeEEec------CCCceeeEEecC
Confidence 455666666666665 677777777654
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.9e-20 Score=186.76 Aligned_cols=269 Identities=16% Similarity=0.141 Sum_probs=188.3
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-EEEeCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGG 95 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~ 95 (630)
+..+++++.|+.|++||+.+++.+..+..+.. + .++.|.+. +..+ ++++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~------------------~~l~~~~d---------g~~l~~~~~~~ 52 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-P------------------RGITLSKD---------GKLLYVCASDS 52 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-C------------------CceEECCC---------CCEEEEEECCC
Confidence 35788999999999999999988877763321 2 23455443 4444 566778
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
+.|++||+.+++....+.. + ..+..++|+|+++.++++ +.++.+++||+.+++.+..+.. ...+.+++|+|+|.++
T Consensus 53 ~~v~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPS-G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV 129 (300)
T ss_pred CeEEEEECCCCcEEEeccC-C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence 9999999999887655542 3 335788999999987655 5689999999999888777763 3346889999999999
Q ss_pred EEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC----c
Q 006808 175 ATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP----A 247 (630)
Q Consensus 175 ~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~ 247 (630)
+++. ..+++||..+++....+.. ...+.+++|+|+++++++++..++.|++||+.+++.. ..+..... .
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~---~~~~~~~~~~~~~ 205 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI---KKITFEIPGVHPE 205 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee---eeeeecccccccc
Confidence 8887 3577889988876655442 3345789999999988776646899999999987633 11111110 0
Q ss_pred -eeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccC
Q 006808 248 -VFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
.....+.++ |++++++++ +.++.+.+||..+++.+...
T Consensus 206 ~~~~~~i~~s-----~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----------------------------------- 245 (300)
T TIGR03866 206 AVQPVGIKLT-----KDGKTAFVALGPANRVAVVDAKTYEVLDYL----------------------------------- 245 (300)
T ss_pred cCCccceEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 111123444 899886554 45678999998665432110
Q ss_pred CceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 326 ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.+...+.+++|+|+|.+|.++++.++.+++|++..
T Consensus 246 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 246 ---------------------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ---------------------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 00113568899999999833446689999999864
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=5.6e-22 Score=179.33 Aligned_cols=242 Identities=16% Similarity=0.289 Sum_probs=191.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+|+++ .|+|....|++|+.|++|++||.......+.++... ....+.++.|.|.
T Consensus 173 devn~l--~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q----------------d~~~vrsiSfHPs------- 227 (430)
T KOG0640|consen 173 DEVNDL--DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ----------------DTEPVRSISFHPS------- 227 (430)
T ss_pred Ccccce--eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh----------------ccceeeeEeecCC-------
Confidence 467555 999999999999999999999987544433333111 1224455655554
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEc--cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec-CCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~--~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~ 160 (630)
|.+|++|+....+++||+.+-++.... ..+|++.|+++.+++.|++.++++.||.|++||--+++|+.++.. |.+
T Consensus 228 --GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 228 --GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG 305 (430)
T ss_pred --CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence 899999999999999999998875333 357999999999999999999999999999999999999998754 544
Q ss_pred -CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCC--C---CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 -GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--G---AVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 -~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~--~---~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.|.+..|..+|+++++.+ ..+++|.+.+++++..+.|-. + .-+...|+....|++.-....+.+.-||.++.
T Consensus 306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 899999999999999988 799999999999999887542 1 23456788888888875544567899999988
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
... ....++|.+.+ +....+ |.+.-+++|+.|-++++|--
T Consensus 386 dr~---~l~slgHn~a~-R~i~HS-----P~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 386 DRV---ALLSLGHNGAV-RWIVHS-----PVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhh---hhcccCCCCCc-eEEEeC-----CCCCceeeecccceeeeeee
Confidence 755 45666666544 445555 88999999999999999964
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=175.77 Aligned_cols=246 Identities=15% Similarity=0.170 Sum_probs=177.1
Q ss_pred eeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+.||.|++.|.+||+|+.||.|.|||+.|...-..+.+|. .++++++|.+. +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~------------------~pi~sl~WS~d---------gr 78 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV------------------RPITSLCWSRD---------GR 78 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc------------------cceeEEEecCC---------CC
Confidence 5789999999999999999999999999887666565443 35667777665 77
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeecCC----CCe
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRAST----KGI 162 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~v 162 (630)
.|++++.|..|.+||+..|.+..++ ...++|+.+.|+|... .++++-.+..-.+-++..++...--.... ...
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEE--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 8999999999999999999988777 3678999999999443 33333334445555554422111101111 122
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc----
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---- 235 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~---- 235 (630)
.+..|.+.|+++++|. |.+.++|..+.+++..++-.. ..|.++.|+..|++|+.-+ .|+.|+.|++..--..
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCccC
Confidence 3446889999999998 999999999999998887655 7899999999999999988 5999999998632111
Q ss_pred cceeeeeec--CCceeeeeEEecCCccCCCCCEEEEEecC-CcEEEEEcCCccccc
Q 006808 236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISET-GVCYIWYGQNIEELR 288 (630)
Q Consensus 236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~ 288 (630)
.......+. -+......++|+ .+|.|+++++.. -.++||.-..|..++
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs-----~dgeYv~a~s~~aHaLYIWE~~~GsLVK 286 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFS-----GDGEYVCAGSARAHALYIWEKSIGSLVK 286 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeec-----CCccEEEeccccceeEEEEecCCcceee
Confidence 000001111 122334555665 899999998763 479999987776654
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=184.47 Aligned_cols=290 Identities=11% Similarity=0.111 Sum_probs=211.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCC--CcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .++.|+|...+|++|+.||+++||.+.. ...++.+.-... ++.+..+.+.+
T Consensus 213 ~~~I--~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f------------------Pi~~a~f~p~G--- 269 (514)
T KOG2055|consen 213 HGGI--TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF------------------PIQKAEFAPNG--- 269 (514)
T ss_pred cCCc--eEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccC------------------ccceeeecCCC---
Confidence 3678 4459999999999999999999998753 223333332222 33344444431
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeE-EccCCCC-CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~-~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
...+++++...-++.||+.+.+... ....++. ..+..+..++++++|+..|..|.|.+....+++.+.+++ -
T Consensus 270 -----~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-i 343 (514)
T KOG2055|consen 270 -----HSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-I 343 (514)
T ss_pred -----ceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-e
Confidence 3378888888889999999887631 2222333 357788999999999999999999999999999999988 4
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCC-CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.+.|..++|+.+++.|++++ |.|++||++...++.++....+ .-++++.++++.||++++ ..|.|.|||..+....
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCFAS 422 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-CcceEEEeccchhhcc
Confidence 67899999999998877765 9999999999999988863322 346778889999999887 7999999996553211
Q ss_pred -cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec--CCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhh
Q 006808 236 -SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (630)
Q Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (630)
....+..+..-...++.+.|+ |++..||.+|. ...+++-.+.+.......+.
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn-----~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-------------------- 477 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFN-----HDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-------------------- 477 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeC-----cchhhhhhhhhccccceEEEeccceeeeccCCC--------------------
Confidence 112445555556667778887 99999888876 44566655443332221110
Q ss_pred hhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 313 ~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
....-+.|.|++|||.|-++ +.|..++.+.+|.+.
T Consensus 478 --------------------------------~n~~vg~vtc~aFSP~sG~l-AvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 478 --------------------------------SNTKVGHVTCMAFSPNSGYL-AVGNEAGRVHLFKLH 512 (514)
T ss_pred --------------------------------CCCcccceEEEEecCCCceE-EeecCCCceeeEeec
Confidence 01223468999999999999 999999999999873
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3e-21 Score=183.85 Aligned_cols=225 Identities=16% Similarity=0.208 Sum_probs=181.4
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++++.||||+|||+|+.|..|.||+..+.+.++.+++|.+.+.+++|... ...
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---------------------------t~~ 258 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---------------------------TSE 258 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC---------------------------ccc
Confidence 78899999999999999999999999999999999999888887777644 566
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++++.|+.|++|++.....+.+++ +|...|.++....-++.+-+|+.|+++++|++. -...-.|.++.+.+-|++|-
T Consensus 259 lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 259 LYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI 336 (479)
T ss_pred eeeeecCCceEEEehhHhHHHHHHh-CCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe
Confidence 8999999999999999888875554 899999999988877777777799999999994 33334678888899999998
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEee-cC-----------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFS-GH-----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h-----------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.+. .+++|+ |.|.+|++.+.+++.+.. .| ..+|++++..|....+++++ ++|.|++|.+..+-.
T Consensus 337 n~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 337 NDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKIEDGLR 414 (479)
T ss_pred ccc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEecCCcc
Confidence 664 566776 999999999888876653 22 22799999999888887776 799999999988732
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
. ...+..+. -..+++.++|. ++|++|++|.
T Consensus 415 ~-i~~l~~ls-~~GfVNsl~f~-----~sgk~ivagi 444 (479)
T KOG0299|consen 415 A-INLLYSLS-LVGFVNSLAFS-----NSGKRIVAGI 444 (479)
T ss_pred c-cceeeecc-cccEEEEEEEc-----cCCCEEEEec
Confidence 2 11233333 34566677776 8899777763
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.2e-21 Score=171.99 Aligned_cols=247 Identities=19% Similarity=0.249 Sum_probs=180.9
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.|.+ +.|+|.++.|+.+++||.+++|++........++ | ..++.+++|..
T Consensus 15 ~IS~--v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~------------------~~plL~c~F~d--------- 64 (323)
T KOG1036|consen 15 GISS--VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-H------------------GAPLLDCAFAD--------- 64 (323)
T ss_pred ceee--EEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-c------------------CCceeeeeccC---------
Confidence 4534 4999999999999999999999998775554443 2 23444555543
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
...+++|+.||.|+.+|+.++... ....|..+|+|+.+++....+++||.|++|++||.+...+..++.. ...|.+
T Consensus 65 -~~~~~~G~~dg~vr~~Dln~~~~~--~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~ 140 (323)
T KOG1036|consen 65 -ESTIVTGGLDGQVRRYDLNTGNED--QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC 140 (323)
T ss_pred -CceEEEeccCceEEEEEecCCcce--eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence 345899999999999999998874 3346999999999999888899999999999999987666666653 348888
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceeeEe--ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc-----c
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-----Q 235 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~-----~ 235 (630)
+... |..|++|+ ..+.+||+++....... ......++++++-|++.-+++++ -||.|.+=.+..... .
T Consensus 141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhce
Confidence 8776 45666654 79999999987643322 23456789999999887777777 599888766655411 1
Q ss_pred cceeeeeecCC---ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
...|....... ...+..+.|+ |-...++||+.||.|.+||+.+.+.++....-
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fh-----p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFH-----PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred eEEeeecccCCceEEEEeceeEec-----cccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 11222222211 2345566666 77789999999999999999988877765443
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=4.7e-22 Score=190.66 Aligned_cols=272 Identities=14% Similarity=0.194 Sum_probs=203.6
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++.+|...+++.||+. |.|+|||+.... ...++..+-. .....-+..+.-.+. ++.|
T Consensus 424 AvtIS~~trhVyTgGk-gcVKVWdis~pg-------~k~PvsqLdc------l~rdnyiRSckL~pd---------grtL 480 (705)
T KOG0639|consen 424 AVTISNPTRHVYTGGK-GCVKVWDISQPG-------NKSPVSQLDC------LNRDNYIRSCKLLPD---------GRTL 480 (705)
T ss_pred EEEecCCcceeEecCC-CeEEEeeccCCC-------CCCccccccc------cCcccceeeeEecCC---------CceE
Confidence 4468888889999986 889999986431 1111111100 000111111122222 7789
Q ss_pred EEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
++|+.-.++.|||+.......... ....-...+++.+||.+..++|..||.|.|||+.+...++.|++|...+.||.++
T Consensus 481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 999998899999998765422221 1222357789999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
++|..|.+|+ ++|+.||++.++.+.... ....|.++.+.|++.+++++= ..+.+.|.......+ +.+..+
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~k------yqlhlh 632 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEK------YQLHLH 632 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEecCCccc------eeeccc
Confidence 9999999999 899999999988765533 467899999999999998864 788888877766542 244455
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 323 (630)
..++-.+.|. +-|+++++.+.|+.+..|...-|..+...+......+|.+ +.+.+ +|++|+.+...
T Consensus 633 eScVLSlKFa-----~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI--S~ddk----yIVTGSGdkkA 698 (705)
T KOG0639|consen 633 ESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI--SFDDK----YIVTGSGDKKA 698 (705)
T ss_pred ccEEEEEEec-----ccCceeeecCchhhhhhccCccccceeeccccCcceeeee--ccCce----EEEecCCCcce
Confidence 6666677776 8899999999999999999999988877777666666665 44444 99999987533
No 117
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-20 Score=191.87 Aligned_cols=329 Identities=15% Similarity=0.168 Sum_probs=224.8
Q ss_pred CCCEEEEeeCCCcEEEEECCCCc-EEE---EecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQ-VQT---EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~-~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
=|.++.++..++.+.||+..+++ ..+ .+....+ ..++.+. .++.. -+.++.
T Consensus 123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~-----------------~~Ital~--HP~TY------LNKIvv 177 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEG-----------------DFITALL--HPSTY------LNKIVV 177 (910)
T ss_pred ecceEEEEEccCcEEEEEeccccccccccceeeeccC-----------------CceeeEe--cchhh------eeeEEE
Confidence 36778888888899999887741 110 1111000 0122221 11111 456899
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
|+..|.+.+|++++++.+.++. ++...|+++.-+|-=..++.|..+|+|.+++++.++.+.+|+...++|++++|.-||
T Consensus 178 Gs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 178 GSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG 256 (910)
T ss_pred eecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCC
Confidence 9999999999999999998885 688999999999977789999999999999999999999999666899999999998
Q ss_pred CEEEEeC---CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc------------c
Q 006808 172 KMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------------Q 235 (630)
Q Consensus 172 ~~l~~~~---g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~------------~ 235 (630)
..+.+.+ |.+.+||++..+.+.... .|.+.|..+.|-|....+++++ .|+.+++|=..++.- .
T Consensus 257 ~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeeccCCCC
Confidence 7655544 899999999888766554 7889999999999888888877 688888775542210 0
Q ss_pred cceeeeeecCCc--------------------------------------------------------------------
Q 006808 236 SASCVLAMEHPA-------------------------------------------------------------------- 247 (630)
Q Consensus 236 ~~~~~~~~~~~~-------------------------------------------------------------------- 247 (630)
+..|+...+...
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 000100000000
Q ss_pred ---------------------------------eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC---
Q 006808 248 ---------------------------------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--- 291 (630)
Q Consensus 248 ---------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--- 291 (630)
....+++ .++-|++.+.|...|.|-+|++++|-....+.
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~-----vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC-----VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEE-----EeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 0011111 23678999999999999999999986655441
Q ss_pred ceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEE---------------------------------EEcCcc
Q 006808 292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV---------------------------------AYGLLL 338 (630)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~---------------------------------~~g~~~ 338 (630)
..+..+... +-++. ...+++++.+|+++.|+-.... .++...
T Consensus 491 ah~~~V~gl---a~D~~--n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 491 AHKGEVTGL---AVDGT--NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred cccCceeEE---EecCC--CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 222222110 11111 1156777777766655432111 111222
Q ss_pred CceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
...+..+.+|.+.++.+.|||||++| ++++.|++||+|++..+
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLPTG 608 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEeccCc
Confidence 33444566899999999999999999 99999999999998643
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.8e-21 Score=190.90 Aligned_cols=290 Identities=19% Similarity=0.217 Sum_probs=200.5
Q ss_pred ccceeEeEECCC---CCEEEEeeCCCcEEEEECCCCcEE------EEecccccccccccccccccccccccceeeEEecc
Q 006808 5 NIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQVQ------TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 5 ~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
|+..+.+.|++. ...||.+..||.|.++|....... ..+. .|. ..+..+.|.+
T Consensus 49 p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-----------------aH~-nAifDl~wap 110 (720)
T KOG0321|consen 49 PVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPL-----------------AHK-NAIFDLKWAP 110 (720)
T ss_pred CCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccc-----------------ccc-ceeEeeccCC
Confidence 444456678773 357889999999999998754432 1222 232 2566777877
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCeeeEE-ccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCc---
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS--- 150 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~--- 150 (630)
. ...|+++++|.++++||+.++.+... +..||.+.|.+++|.|... .|++|+.||.|.|||++-..
T Consensus 111 g---------e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 111 G---------ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred C---------ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 3 67799999999999999999887644 3468999999999999554 58899999999999986321
Q ss_pred ------------------------eeEEeecCCCCeEE---EEEccCCCEEEEeC---CeEEEEECCCCceee-------
Q 006808 151 ------------------------LLGKFRASTKGISC---MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ------- 193 (630)
Q Consensus 151 ------------------------~~~~~~~~~~~v~~---l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~------- 193 (630)
.++....+...|.+ +.+..|...||+++ +.|+|||+++.....
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 12222334444554 55566888999887 799999998764322
Q ss_pred -EeecC---CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEE
Q 006808 194 -KFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (630)
Q Consensus 194 -~~~~h---~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 269 (630)
.+..| ...+.++.....|.+|++.+. |+.|++|++.+.......+ +.......+..-... +|++.+|++
T Consensus 262 ~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~-~sg~~~~sf~vks~l-----Spd~~~l~S 334 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAE-FSGKLNSSFYVKSEL-----SPDDCSLLS 334 (720)
T ss_pred cCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhh-ccCcccceeeeeeec-----CCCCceEec
Confidence 22333 235677777788899999985 9999999998865431111 111111222222223 399999999
Q ss_pred EecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccC
Q 006808 270 ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS 349 (630)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~ 349 (630)
|+.|...++|.+.+.+. .+ . -+.+|.
T Consensus 335 gSsd~~ayiw~vs~~e~-----------------~~-------~------------------------------~l~Ght 360 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEA-----------------PP-------A------------------------------LLLGHT 360 (720)
T ss_pred cCCCcceeeeeecCccC-----------------Ch-------h------------------------------hhhCcc
Confidence 99999999998854432 00 0 123677
Q ss_pred CCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 350 GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 350 ~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.+|.+++|.|....=.+++|.|-.+++|++.++
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 788888888764432277899999999998654
No 119
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=2.1e-19 Score=172.91 Aligned_cols=346 Identities=12% Similarity=0.085 Sum_probs=233.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEeccccccccccccccc--ccccccccceeeEEecccccccccc---
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR--LEREHLSVDYTCMKWLSVDRKKKRK--- 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~w~~~~~~~~~~--- 83 (630)
+|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.+.+++...+ +..| +.+-..+.|...-.+.+..
T Consensus 250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSG--gKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSG--GKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeec--CccceEEeccccccccccccCc
Confidence 7889999996 568999999999999888777776688888877665443 1111 2233445665221111000
Q ss_pred ----------cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 84 ----------LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 84 ----------~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
.+..-|++|+....|.-=.+.++..+.. .+|......++.+|+.+.+++++.|+.+++|+ ..+++.
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w 402 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW 402 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence 0222266677666666666665554422 37888999999999999999999999999999 455554
Q ss_pred EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+.. -..++.|+.|+|.| .++.|. |...+.|.++...+..-.. ..++++++|+|+|.+|++++ .|+.|++|.+..
T Consensus 403 t~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 403 TKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVSA 478 (626)
T ss_pred EEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEec-CCCeEEEEEECC
Confidence 433 45688999999999 888887 9999999998665554444 88999999999999999988 799999999977
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee-ccC---CC-ccc
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-SED---VN-SKS 306 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~---~~-~~~ 306 (630)
.... ......+....+..+.|+ +|++++.+-+.|-.|.+|....-.++...+..++... |.. ++ ..+
T Consensus 479 ~g~~---y~r~~k~~gs~ithLDwS-----~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 479 NGRK---YSRVGKCSGSPITHLDWS-----SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred CCcE---EEEeeeecCceeEEeeec-----CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 6533 222222334677777787 9999999999999999995333333333232222110 100 00 111
Q ss_pred ccc-------h-hhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 307 QKS-------A-TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 307 ~~~-------~-~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+.. . ...+++|-..|.+++ +..-.......+..+.+|++.|.+++|+.+...| ++.+.|.++..|.
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~l-----f~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~l-i~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHL-----FSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHL-ISTGKDTSIMQWR 624 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEE-----EccccCCCcccceeeccccceeEEEEEeeCCceE-EecCCCceEEEEE
Confidence 110 0 112222222232222 1122344566778888999999999999888777 5555899999997
Q ss_pred e
Q 006808 379 V 379 (630)
Q Consensus 379 ~ 379 (630)
+
T Consensus 625 l 625 (626)
T KOG2106|consen 625 L 625 (626)
T ss_pred e
Confidence 6
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=4.6e-21 Score=191.16 Aligned_cols=223 Identities=15% Similarity=0.231 Sum_probs=180.4
Q ss_pred eEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++|.+ ++-.+++|+.|.+|.+|...+......+++|.+.+.+ +.-.. ...+
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~------------------ls~~~----------~~~~ 115 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS------------------LSIGE----------DGTL 115 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee------------------eecCC----------cCce
Confidence 35554 4456899999999999999999999999977765443 22211 2238
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
++|+.|.++++|-...-.. . ..+|+..|+++++-|++ .++|||.|.+|++|.- ++.+++|.+|...|+.+++-|
T Consensus 116 iSgSWD~TakvW~~~~l~~--~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 116 ISGSWDSTAKVWRIGELVY--S-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred EecccccceEEecchhhhc--c-cCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec
Confidence 9999999999997654332 3 46899999999999987 8999999999999984 889999999999999999999
Q ss_pred CCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCce
Q 006808 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV 248 (630)
Q Consensus 170 ~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (630)
++.++-++. |.|++|++ +|.++.++.+|+..|.++...+++..++++| +|++++||+... |...+.++..
T Consensus 190 ~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~e-------~~q~I~lPtt 260 (745)
T KOG0301|consen 190 DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKDE-------CVQVITLPTT 260 (745)
T ss_pred CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecCc-------eEEEEecCcc
Confidence 877666655 99999998 8889999999999999999888888888888 799999999772 5667777774
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.+.++.+- ++|. |++|+.||.|+||...
T Consensus 261 siWsa~~L-----~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 261 SIWSAKVL-----LNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ceEEEEEe-----eCCC-EEEeccCceEEEEEec
Confidence 44444332 4544 7889999999999865
No 121
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.5e-22 Score=185.47 Aligned_cols=265 Identities=10% Similarity=0.035 Sum_probs=198.0
Q ss_pred EeEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
|++=+|.. ..+|+|+.||.|+|||+.+..+..+|..|.+.+..+++.. ..
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-----------------------------~~ 121 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-----------------------------TS 121 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-----------------------------cc
Confidence 34777766 6899999999999999999999999999988777655542 34
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++++.|.+|+.|.+... ...++. -.+.+.++.-+..+..|+|||.+ |.|||.....+++.+.-....|.++.|+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred eEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecC
Confidence 789999999999998763 333332 23567777777777889999875 8999999999999988777789999999
Q ss_pred cCCC-EEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 169 SDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 169 p~~~-~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
|... +|++++ +.|.+||++++.+++.+. -...-+.|+|+|.+-.| +++.+|..++.||++..... ......
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF-~~a~ED~nlY~~DmR~l~~p----~~v~~d 270 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNF-VAANEDHNLYTYDMRNLSRP----LNVHKD 270 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccce-eeccccccceehhhhhhccc----chhhcc
Confidence 9655 555553 899999999999887764 23445789999955444 44558999999999886643 222233
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc----eeEEeeccCCCcccccchhhhhhhccccc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA----TKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
+...+..+.|+ |.|.-+++||.|.+|+||....+........ ...++. ++.+.+ +|++|+.|+
T Consensus 271 hvsAV~dVdfs-----ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk----~S~Dsk----yi~SGSdd~ 337 (433)
T KOG0268|consen 271 HVSAVMDVDFS-----PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVK----YSMDSK----YIISGSDDG 337 (433)
T ss_pred cceeEEEeccC-----CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEE----Eecccc----EEEecCCCc
Confidence 33444445565 9999999999999999999877654322211 222332 566777 999999998
Q ss_pred cccCCc
Q 006808 322 IVKPAS 327 (630)
Q Consensus 322 ~~~~~~ 327 (630)
.+++|.
T Consensus 338 nvRlWk 343 (433)
T KOG0268|consen 338 NVRLWK 343 (433)
T ss_pred ceeeee
Confidence 666543
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.3e-21 Score=187.64 Aligned_cols=230 Identities=16% Similarity=0.253 Sum_probs=180.4
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEE--EEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+|...|||+.|++|+.-.++.|||+...... .++.........+..+|+ .+
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD---------------------------ak 522 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---------------------------AK 522 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---------------------------cc
Confidence 4589999999999999999999999865432 222211111111222222 67
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
+.++|+.||.|.|||+.+...+..+ .||+..+.||.++++|..|++|+-|.+|+.||++.++.+.... ....|.++..
T Consensus 523 vcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~ 600 (705)
T KOG0639|consen 523 VCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY 600 (705)
T ss_pred eeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence 7899999999999999988888555 5899999999999999999999999999999999998766543 4568999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
+|++.+|++|. +.+.+...... ....+.-|..-|.++.|.+-|++++++| .|+.+..|...-+. .++....
T Consensus 601 cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGa-----siFqskE 673 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGA-----SIFQSKE 673 (705)
T ss_pred CCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC-chhhhhhccCcccc-----ceeeccc
Confidence 99999999998 67777765433 3445667899999999999999999999 69999999988776 3455444
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
...+..| .++ .|.++|++|+.|....||.+
T Consensus 674 ~SsVlsC-DIS-----~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSC-DIS-----FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceee-eec-----cCceEEEecCCCcceEEEEE
Confidence 4444443 343 68899999999999888865
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=8.2e-21 Score=176.37 Aligned_cols=203 Identities=16% Similarity=0.263 Sum_probs=152.0
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccc----cccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIAST----ETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+..+.|+-+..|.|.||++... +..+...... .....|... +|. ...-.+.|.|.. ...+++
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~s~~~Pl~t~~---ghk-~EGy~LdWSp~~--------~g~Lls 229 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKDSEFRPLFTFN---GHK-GEGYGLDWSPIK--------TGRLLS 229 (440)
T ss_pred CcceeeeecccCcEEEEEchhh--hhhhcCccccccccccCceEEec---ccC-ccceeeeccccc--------cccccc
Confidence 5567777788999999998532 2222222111 122223322 555 345578888854 455788
Q ss_pred EeCCCeEEEEEccCCeee--EEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCC---ceeEEeecCCCCeEEE
Q 006808 92 GTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGISCM 165 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~l 165 (630)
|...+.|++|.+.+|.-. ...+.+|+..|-.++|||. ...|++||-||+|+|||++.+ .++. .+.|.+.|+.|
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVI 308 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVI 308 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeE
Confidence 888889999999987643 2334579999999999994 456999999999999999988 3443 37899999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCC---CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSD---HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~---~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.|+..-.+||+|+ |+++|||+++ ++++.+|+.|..+|++|.|+|.....+.+++.|..|.+||+....
T Consensus 309 SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 309 SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999888999998 9999999986 467889999999999999999655444444479999999986543
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=2.9e-20 Score=178.75 Aligned_cols=315 Identities=15% Similarity=0.171 Sum_probs=224.0
Q ss_pred cccceeEeEECC--CCCEEEEe--eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 4 SNIRDILTSFSP--ALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 4 ~~V~~~~~~fs~--dg~~las~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
..| .|++||+ .|.+|+.. +.+..+.|||+..+......+... ..+....|.|.++.
T Consensus 155 ~GV--~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn------------------e~v~~a~FHPtd~n 214 (626)
T KOG2106|consen 155 RGV--TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN------------------EVVFLATFHPTDPN 214 (626)
T ss_pred ccc--eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc------------------ceEEEEEeccCCCc
Confidence 346 5669998 35666655 346779999999877665544322 23445566666532
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEc---cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~---~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+++..+.|.+.+|+++.+....+. .......|.|++|.++|. +++|..+|.|.||+..+.+..+...
T Consensus 215 ---------liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~ 284 (626)
T KOG2106|consen 215 ---------LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH 284 (626)
T ss_pred ---------EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee
Confidence 566667788999999988664332 222336799999999886 7899999999999998888877777
Q ss_pred cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-----------ee-----------------------------eE
Q 006808 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------KM-----------------------------QK 194 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-----------~~-----------------------------~~ 194 (630)
.|.+.|.+++...+|.+|- |+ +.|..||-.-.+ .+ ..
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 9999999999999997766 66 789999832100 00 11
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
..+|......++.+|+...+++++ .|+.+++|+ ..+.. ....+..+ ..++.|. |.| .++.|+..|
T Consensus 364 v~gh~delwgla~hps~~q~~T~g-qdk~v~lW~--~~k~~---wt~~~~d~---~~~~~fh-----psg-~va~Gt~~G 428 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCG-QDKHVRLWN--DHKLE---WTKIIEDP---AECADFH-----PSG-VVAVGTATG 428 (626)
T ss_pred EEecccceeeEEcCCChhheeecc-CcceEEEcc--CCcee---EEEEecCc---eeEeecc-----Ccc-eEEEeeccc
Confidence 236777788899999999999998 799999999 22221 22223222 3455665 888 999999999
Q ss_pred cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEE
Q 006808 275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDIN 354 (630)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~ 354 (630)
...+.|..+...+..+.. ...+++. .|+|++. .++.|+.|+++++|. ....| .....+....+ .++..
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v-~ysp~G~----~lAvgs~d~~iyiy~---Vs~~g-~~y~r~~k~~g--s~ith 496 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVV-RYSPDGA----FLAVGSHDNHIYIYR---VSANG-RKYSRVGKCSG--SPITH 496 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEE-EEcCCCC----EEEEecCCCeEEEEE---ECCCC-cEEEEeeeecC--ceeEE
Confidence 999999998766554443 2222222 2899998 999999999888753 11111 11222223333 78999
Q ss_pred EeecCCcceeeccccceeccccc
Q 006808 355 LNCSQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 355 ~~~s~dg~~l~~s~s~d~~~~~w 377 (630)
+.||+|+++| .+.|.|--+-.|
T Consensus 497 LDwS~Ds~~~-~~~S~d~eiLyW 518 (626)
T KOG2106|consen 497 LDWSSDSQFL-VSNSGDYEILYW 518 (626)
T ss_pred eeecCCCceE-EeccCceEEEEE
Confidence 9999999999 999999999999
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.5e-20 Score=185.81 Aligned_cols=341 Identities=13% Similarity=0.099 Sum_probs=219.4
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCC--cEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
.++.|+|.+..|+++|.|.++.||.-.+. --....+-.. .++.....-...|++. +
T Consensus 271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe-------------~gg~a~GF~g~lw~~n---------~ 328 (764)
T KOG1063|consen 271 YSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE-------------VGGSAGGFWGGLWSPN---------S 328 (764)
T ss_pred EEEEEccchhhheecccCcceEEEecCCccceEEEEEEeec-------------ccccccceeeEEEcCC---------C
Confidence 45599999999999999999999976543 3222222100 0111222334455554 6
Q ss_pred cEEEEEeCCCeEEEEEccCC-e-eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---------------
Q 006808 87 SLLVLGTGGGDVLALAVSAG-Q-LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--------------- 149 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~-~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~--------------- 149 (630)
+.+++-+..|..++|..... . .......||...|++++|+|.|.+|+++|.|.+-++|---..
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 67888888999999983322 1 122344689999999999999999999999998888743200
Q ss_pred --------------------ceeEEee-----------------------------------------------------
Q 006808 150 --------------------SLLGKFR----------------------------------------------------- 156 (630)
Q Consensus 150 --------------------~~~~~~~----------------------------------------------------- 156 (630)
+.++.|.
T Consensus 409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC 488 (764)
T ss_pred cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence 0011111
Q ss_pred ----------------------------------cCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeEe
Q 006808 157 ----------------------------------ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKF 195 (630)
Q Consensus 157 ----------------------------------~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~~ 195 (630)
+|...|++++.+|+|+++|+++ ..|++|+..+...+..+
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L 568 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL 568 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence 5667899999999999999987 37999999999888899
Q ss_pred ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 196 ~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
.+|.-.|+.++|||||+||++.+ .|+++.+|.............. ...+..++-.+.|+ |++.+++|+|.|..
T Consensus 569 ~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~~fa~-~k~HtRIIWdcsW~-----pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEFRFAC-LKAHTRIIWDCSWS-----PDEKYFATASRDKK 641 (764)
T ss_pred cccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhhhhcc-ccccceEEEEcccC-----cccceeEEecCCce
Confidence 99999999999999999999998 7999999998654433111111 23344444444454 99999999999999
Q ss_pred EEEEEcCCc--ccccccC--ceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCcc----CceeeEEec
Q 006808 276 CYIWYGQNI--EELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL----KPSFQKILV 347 (630)
Q Consensus 276 i~iwd~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~----~~~~~~~~~ 347 (630)
|.||..... +.+.... +...+++...............++.|-..|-+.++.-....--+... ........+
T Consensus 642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG 721 (764)
T ss_pred EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence 999998776 3333211 11111111110111111111133444444544333211000000100 111122235
Q ss_pred cCCCcEEEeecCC----------cceeeccccceecccccee
Q 006808 348 NSGEDINLNCSQD----------GVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 348 h~~~v~~~~~s~d----------g~~l~~s~s~d~~~~~w~~ 379 (630)
|.+.|..+.|+|- ...| ++|+.|.++|+.++
T Consensus 722 ~~~aV~rl~w~p~~~~~~~~~~~~l~l-a~~g~D~~vri~nv 762 (764)
T KOG1063|consen 722 PDSAVNRLLWRPTCSDDWVEDKEWLNL-AVGGDDESVRIFNV 762 (764)
T ss_pred hHHhhheeEeccccccccccccceeEE-eeecccceeEEeec
Confidence 8888999999975 2345 88888999998776
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=7.6e-21 Score=181.26 Aligned_cols=245 Identities=12% Similarity=0.124 Sum_probs=179.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEE---------ccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCc-----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWR---------LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS----- 150 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~---------~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~----- 150 (630)
..+|++++..+.|.|||..+-..... .+.+|...-++++|++.. .++++++.|++|++||+....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 66888889999999999865322211 235788878899999843 469999999999999987432
Q ss_pred --eeEEeecCCCCeEEEEEccC-CCEEEEeC--CeEEEEECC--CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCe
Q 006808 151 --LLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (630)
Q Consensus 151 --~~~~~~~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~ 223 (630)
+...+.+|...|..++|+|- ...+++++ +.+.|||++ +.++.....+|.++|.+++|+|-+.+++++++.|++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 34568899999999999994 44556665 899999999 455666778999999999999988777777767999
Q ss_pred EEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC-CCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCC
Q 006808 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (630)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (630)
|.+||++..+.. ...+..+...+..+-|+ |+ ...|++++.|+++.|||+..-..-+.
T Consensus 297 V~LwDlRnL~~~----lh~~e~H~dev~~V~WS-----Ph~etvLASSg~D~rl~vWDls~ig~eq~------------- 354 (422)
T KOG0264|consen 297 VALWDLRNLNKP----LHTFEGHEDEVFQVEWS-----PHNETVLASSGTDRRLNVWDLSRIGEEQS------------- 354 (422)
T ss_pred EEEeechhcccC----ceeccCCCcceEEEEeC-----CCCCceeEecccCCcEEEEeccccccccC-------------
Confidence 999999997653 44444444444444444 54 56788889999999999854322111
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+... .+| ...+++.. .||.+.|..+.|.|+.....+|.+.|+.+.+|...
T Consensus 355 --~eda----------~dg-----ppEllF~H-----------gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 --PEDA----------EDG-----PPELLFIH-----------GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred --hhhh----------ccC-----CcceeEEe-----------cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000 011 00111111 28999999999999998876899999999999874
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3e-22 Score=200.26 Aligned_cols=224 Identities=15% Similarity=0.248 Sum_probs=191.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
..-..++.+++|+.|..+-+|.+.....+..+.+|.+.+.++.|... ..+|+.
T Consensus 35 k~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~---------------------------E~Llaa 87 (825)
T KOG0267|consen 35 KIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS---------------------------ERLLAA 87 (825)
T ss_pred eeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc---------------------------hhhhcc
Confidence 34456788999999999999998877777778888888777777665 778999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
|+.+|+|++||+..++.+.++ .+|...+.++.|+|-|.++++|+.|+.+++||++...|.+.+.+|...|.++.|+|+|
T Consensus 88 gsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred cccCCceeeeehhhhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence 999999999999999888655 5899999999999999999999999999999999899999999999999999999999
Q ss_pred CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCcee
Q 006808 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (630)
Q Consensus 172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (630)
++++.++ .++++||+..|+.+..|.+|.+.+..+.|+|..-.++.++ .|+++++||+++-... -.......-
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~I-----~s~~~~~~~ 240 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEVI-----SSGKPETDG 240 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeeeeccceeEEe-----eccCCccCC
Confidence 9999998 7999999999999999999999999999999876666666 6999999999976532 222333445
Q ss_pred eeeEEecCCccCCCCCEEEEEecCC
Q 006808 250 MDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
+.+..|+ |++..+++|....
T Consensus 241 v~~~~fn-----~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 241 VRSLAFN-----PDGKIVLSGEQIS 260 (825)
T ss_pred ceeeeec-----CCceeeecCchhh
Confidence 6667776 8998888886653
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=179.65 Aligned_cols=198 Identities=22% Similarity=0.267 Sum_probs=163.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC---------CCceeEEee
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---------TGSLLGKFR 156 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~---------~~~~~~~~~ 156 (630)
+.+++.|+..|.|++|.+.+|..+..+ .+|-..|+|+.|+.||.+|++||.||.|.+|.+. +-++++.|.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS 171 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence 788888889999999999999988555 6899999999999999999999999999999763 346788899
Q ss_pred cCCCCeEEEEEccCC--CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 157 ASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.|.-+|+.+...+.| ..|++++ .++++||+..+..+.++. ....+.+++..|-++.+++|+ .+|.|.+.++...
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKL 249 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcC
Confidence 999999999988753 5788887 899999999999888876 567899999999999999888 6999998887654
Q ss_pred ccccc-----------eeeee-ecCCc-eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 233 KKQSA-----------SCVLA-MEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 233 ~~~~~-----------~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..+.. ..... .+|.. ..++|+..+ -||..|++|+.||.++|||+.+.+.+++..
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-----~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-----TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEe-----cCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 31100 01111 22333 478888887 899999999999999999999888877654
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=4.1e-20 Score=167.09 Aligned_cols=255 Identities=17% Similarity=0.149 Sum_probs=181.3
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI 144 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iw 144 (630)
..+.+++|.|.. ..++++++.||+|++|+++. |..+.+....|.++|.+++|+.+|..+++|+.|+.+++|
T Consensus 28 DsIS~l~FSP~~--------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 28 DSISALAFSPQA--------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred cchheeEecccc--------CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 355666766632 67788999999999999987 566556666899999999999999999999999999999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccCCC--EEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSDGK--MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
|+.+++ ...+..|.++|.++.|-+... .|++|+ .+|+.||.+...++.++. -...+.++..- ...++++. .
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVat-a 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVAT-A 174 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEe-c
Confidence 999995 556788999999999988655 789998 899999999988888776 34556655442 33455555 5
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeee-EEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeec
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (630)
++.|.+|+++.+...-...... -...+++ .+| ++....+.|+-.|++.|..+..+.+... ....|
T Consensus 175 ~r~i~vynL~n~~te~k~~~Sp---Lk~Q~R~va~f------~d~~~~alGsiEGrv~iq~id~~~~~~n-----FtFkC 240 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESP---LKWQTRCVACF------QDKDGFALGSIEGRVAIQYIDDPNPKDN-----FTFKC 240 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCc---ccceeeEEEEE------ecCCceEeeeecceEEEEecCCCCccCc-----eeEEE
Confidence 9999999998765331111111 1223333 344 5666669999999999998877654111 11111
Q ss_pred cCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.. ... . .++ .+| .|.+++|+|.-..| +|.+.||+..+|+-
T Consensus 241 HR----~~~----~-----~~~----------~VY----------------aVNsi~FhP~hgtl-vTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 241 HR----STN----S-----VND----------DVY----------------AVNSIAFHPVHGTL-VTAGSDGTFSFWDK 280 (347)
T ss_pred ec----cCC----C-----CCC----------ceE----------------EecceEeecccceE-EEecCCceEEEecc
Confidence 10 000 0 000 112 68899999988888 78878999999997
Q ss_pred ccceeeccc
Q 006808 380 QNRVTALDR 388 (630)
Q Consensus 380 ~~~~~~~~~ 388 (630)
.. .+.|..
T Consensus 281 da-r~kLk~ 288 (347)
T KOG0647|consen 281 DA-RTKLKT 288 (347)
T ss_pred hh-hhhhhc
Confidence 53 344433
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=1.9e-20 Score=186.78 Aligned_cols=334 Identities=13% Similarity=0.116 Sum_probs=235.2
Q ss_pred eeEeEECC-CCC-EEEEeeCCCcEEEEECCCC--cEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 8 DILTSFSP-ALD-YFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 8 ~~~~~fs~-dg~-~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+|+++.| .+. ++|.|+.+..|.++.-.+. ..+.++.+|...+.++.|... ++
T Consensus 148 pLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~---~~-------------------- 204 (764)
T KOG1063|consen 148 PLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL---GG-------------------- 204 (764)
T ss_pred hHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc---CC--------------------
Confidence 35667777 344 4556667888888865533 457788888888888777655 22
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCe------------------------eeE------EccCCCCCCEEEEEEecCCCEEE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQ------------------------LKW------RLSDCHPGGVSAISFATHGSCIY 133 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~------------------------~~~------~~~~~h~~~v~~~~~s~~g~~l~ 133 (630)
+.-++++++.|..|+||.+.-+. .+. .+..||...|.++.|+|.+..|+
T Consensus 205 -~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL 283 (764)
T KOG1063|consen 205 -DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL 283 (764)
T ss_pred -CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence 14578889999999999875332 011 22358999999999999998999
Q ss_pred EEeCCCcEEEEeCCCCc-------eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC---ceeeEeecCCCC
Q 006808 134 SAGADGMVCEIDPLTGS-------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA 201 (630)
Q Consensus 134 s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~ 201 (630)
+++.|.++.+|...+.. .+....+........-|+|++..+++-+ |..++|-.... .......||...
T Consensus 284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 99999999999765432 1122233344688999999998888877 89999983332 233345799999
Q ss_pred eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce-------------eeeee-------------------------
Q 006808 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-------------CVLAM------------------------- 243 (630)
Q Consensus 202 v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~-------------~~~~~------------------------- 243 (630)
|+.+.|+|.|.||+++| .|.+-|+|-.-..+ .... |+..+
T Consensus 364 V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q-~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQ-QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred ceeeeecCCCCEEEEec-cccceeeecccccc-cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 99999999999999998 58887876543110 0000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 006808 244 -------------------------------------------------------------------------------- 243 (630)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (630)
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
..++..+.+++ .+|+|+++|+++... .|++|+..+-.+.+..+.+...+.. ..|+|+++ ++++++
T Consensus 522 YGHGyEv~~l~-----~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~-l~FSpdg~----~LLsvs 591 (764)
T KOG1063|consen 522 YGHGYEVYALA-----ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR-LAFSPDGR----YLLSVS 591 (764)
T ss_pred ccCceeEEEEE-----ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE-EEECCCCc----EEEEee
Confidence 00011122222 348999999998744 6899999888776655555444443 23999999 999999
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.|.+..+|..+--+ .....|...+.|+.-|+.+.|+||+.++ +|+|.|+++++|...+.
T Consensus 592 RDRt~sl~~~~~~~----~~e~~fa~~k~HtRIIWdcsW~pde~~F-aTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDI----KDEFRFACLKAHTRIIWDCSWSPDEKYF-ATASRDKKVKVWEEPDL 650 (764)
T ss_pred cCceEEeeeeeccc----chhhhhccccccceEEEEcccCccccee-EEecCCceEEEEeccCc
Confidence 99887776543222 2222366788999999999999999998 99999999999988643
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=8.3e-21 Score=189.32 Aligned_cols=242 Identities=17% Similarity=0.213 Sum_probs=195.0
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.+|++ +.||+|++||+|..-|+++||++..-+....+..|...+.++.|+.+ .-
T Consensus 461 G~R~~--~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p------------------~~------ 514 (1080)
T KOG1408|consen 461 GFRAL--AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP------------------VL------ 514 (1080)
T ss_pred ceEEE--EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc------------------hh------
Confidence 46555 99999999999999999999999998888888877776666655543 21
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC--CEEEEEeCCCcEEEEeCCCCceeEEee-----c
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFR-----A 157 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~ 157 (630)
...+|++++.|.-|.|||+..+-.+...+.+|++.|+++.|...| ..+++++.|+.|.+--.+....-..|. .
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~ 594 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL 594 (1080)
T ss_pred hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence 156789999999999999988776666677999999999998876 568999999877543322111111122 1
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec---CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
....++.+++.|..+++++++ ..|+||++.+|+..+.|++ |.+....+...|.|.|++++++ |+++.++|+.++
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~~Df~sg 673 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCFVDFVSG 673 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEEEEeccc
Confidence 234789999999999999998 8999999999999999964 5677788899999999999985 999999999998
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
+ |+..+..+...++.+.|. +|-++|++.+.||.|.||.+..
T Consensus 674 E-----cvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 E-----CVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred h-----hhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECch
Confidence 8 555555666677777777 8999999999999999999754
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.4e-20 Score=175.29 Aligned_cols=252 Identities=18% Similarity=0.214 Sum_probs=175.4
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEE---EEecccccccc----cccccccccccccccceeeEEecccccccccccCCcE
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTET----TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~----~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.|+|+|.|..|..|.|||+.-...+ ..+....+... ...++ ..+|+. .+..+.|+..- .+.
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~---~~gHTd-avl~Ls~n~~~--------~nV 258 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNS---ASGHTD-AVLALSWNRNF--------RNV 258 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccc---cccchH-HHHHHHhcccc--------cee
Confidence 3689999999999999998532111 11110000000 00000 113432 33455665443 678
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCcee-EEeecCCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLL-GKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~l~ 166 (630)
|++|+.|.+|.+||+.++++...+. .|...|.++.|+| ....|++|+.|++|.+.|++...+. ..++ ..+.|-.++
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~ 336 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVA 336 (463)
T ss_pred EEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEE
Confidence 9999999999999999999986664 6999999999999 4567999999999999999853332 2334 456899999
Q ss_pred EccCCCEEEEeC---CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeee
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 242 (630)
|.|.....+.++ |+++-+|+++. +++.+++.|.++|.++++++.-..++++++.|+.+++|++...... .+..
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---~v~~ 413 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK---SVKE 413 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc---cccc
Confidence 999765544444 99999999985 8999999999999999999887777777778999999999776532 1111
Q ss_pred ecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccccc
Q 006808 243 MEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
....-....|..+. |+- .+++.|+..+.++|||+.+...++.
T Consensus 414 ~~~~~~rl~c~~~~-----~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 414 HSFKLGRLHCFALD-----PDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccceeecccC-----CCcceEEEecCccceEEEeecccChhHHH
Confidence 11111113333333 443 5677788888999999987765543
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.1e-19 Score=179.16 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=187.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.|..+ +|++ |..|.+.+.+|.|.-||+.+++....+....+.+.+++.+|.
T Consensus 70 rsIE~L--~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~------------------------- 121 (691)
T KOG2048|consen 70 RSIESL--AWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE------------------------- 121 (691)
T ss_pred CceeeE--EEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-------------------------
Confidence 456455 8885 456777778899999999999999998877777776666655
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeE-EccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-----c
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----A 157 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~-~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~ 157 (630)
+..+++|+.+|.+..++...++... +.+....+.|.+++|+|++..+++|+.||.|++||..+++.+.... .
T Consensus 122 --~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 122 --NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred --cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 7789999999988888888887643 3334456899999999999999999999999999999988766221 1
Q ss_pred ---CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 158 ---STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 158 ---~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
...-|.++.|-.++ .|++|. |+|.+||...+..++.+..|...|.+++.++++.+++++| -|+.|..|...+.
T Consensus 200 ~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 200 SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTTN 277 (691)
T ss_pred ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence 22256777777665 667776 9999999999999999999999999999999999999998 5999988888776
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
+.. +.......++...+.+++.. + ..+++|+.|+.+.+-....
T Consensus 278 ~~~-wv~~~~r~~h~hdvrs~av~-----~--~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 278 KSE-WVINSRRDLHAHDVRSMAVI-----E--NALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccc-eeeeccccCCcccceeeeee-----c--ceEEecceeeEEEEccccc
Confidence 542 22333344555556666554 3 4899999999988866544
No 134
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=7e-20 Score=166.92 Aligned_cols=261 Identities=18% Similarity=0.247 Sum_probs=179.9
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecc----cccccccccCC
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS----VDRKKKRKLGS 86 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~----~~~~~~~~~~~ 86 (630)
+.|||||.-|++-+.|..+++|++-.--.-....+. .......+-. -..+..+-...|.+ .+|. .
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~--~~~~~~~~~r---~~eg~tvydy~wYs~M~s~qP~------t 123 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP--LNFSKHLSYR---YQEGETVYDYCWYSRMKSDQPS------T 123 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCc--cccccceeEE---eccCCEEEEEEeeeccccCCCc------c
Confidence 489999999999999999999998532111100000 0000000000 01122344455642 2333 7
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccC-CCCC---CEEEEEEecCCCEEEEEeCCCcEEEEeC-CCCceeEE---ee--
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPG---GVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK---FR-- 156 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~-~h~~---~v~~~~~s~~g~~l~s~~~dg~v~iwd~-~~~~~~~~---~~-- 156 (630)
+++++.+.+.-|++||.-+|+....+.. .|.. ...+++|+|||..|++| ...+|++||+ +.|+-... +.
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence 7888888888899999999987654421 1322 45789999999999887 5678999998 55542211 11
Q ss_pred --cCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 157 --ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 157 --~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+..+-+.|++|+|. .+.+++++ .++-||.-..+.++..+.+|.+.|+.+.|.++|+.|++++..|..|-.||++.
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 23567899999994 55888888 67888887788899999999999999999999999999998888999999998
Q ss_pred Cccccceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC-ccccccc
Q 006808 232 VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNT 290 (630)
Q Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~ 290 (630)
.+.. +..+. |......-+.|. ..|.+.+|++|+.||.|++||++. |+.....
T Consensus 283 ~~~p----v~~L~rhv~~TNQRI~FD---ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 283 SRDP----VYALERHVGDTNQRILFD---LDPKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred ccch----hhhhhhhccCccceEEEe---cCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence 7644 22222 222122223332 238999999999999999999987 5544333
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=8.2e-19 Score=174.98 Aligned_cols=240 Identities=12% Similarity=0.100 Sum_probs=171.6
Q ss_pred EeEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+++|+|+|+.+ ++++.++.|++||..+++....+..+. ....+.|.+. ++.
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------------------~~~~~~~~~~---------g~~ 86 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-------------------DPELFALHPN---------GKI 86 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-------------------CccEEEECCC---------CCE
Confidence 45999999876 566778999999999988776554221 1223455543 444
Q ss_pred EEE-EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC-cEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 89 LVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~-~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
+++ +..++.|.+||+.+++.+..+. +...+.+++|+|+|.++++++.++ .+..||..+++....+.. ...+.+++
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~ 163 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAE 163 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEE
Confidence 544 4567899999999887765553 234578899999999999888765 567789988877665543 33457899
Q ss_pred EccCCCEEEEeC---CeEEEEECCCCceeeEeecCC-----C--CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP-----G--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~-----~--~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
|+|+++++++++ +.|++||+.+++.+..+..+. . ....++|+|++++++++...++.+.+||+.+.+..
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~- 242 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL- 242 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-
Confidence 999999886553 799999999998776664321 1 23468899999986665435778999999876533
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccC
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~ 291 (630)
.... +.. .+..+.|+ |+|.+|++++ .+|.|.+||+.+++.+...+
T Consensus 243 --~~~~--~~~-~~~~~~~~-----~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 243 --DYLL--VGQ-RVWQLAFT-----PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred --EEEE--eCC-CcceEEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 1111 122 34455666 9999998864 58999999999988766553
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=7.2e-22 Score=197.57 Aligned_cols=210 Identities=15% Similarity=0.195 Sum_probs=174.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
...++.|+.+..+-+|.+..-..+..+ .+|.++|.++.|++...+|++|+.+|+|++||+..++.++++.+|...+.++
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv 118 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV 118 (825)
T ss_pred ceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee
Confidence 567888888888999998877666553 5899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.|+|-+.+.+.|+ +.+++||++...+...+.+|...+..+.|+|+|++++.++ +|..++|||+..++.. ..+
T Consensus 119 ~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~-----~ef 192 (825)
T KOG0267|consen 119 DFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLS-----KEF 192 (825)
T ss_pred eeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecccccccc-----ccc
Confidence 9999999998887 8999999998889999999999999999999999999998 6899999999888743 233
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccccc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (630)
..+...+..+-|. |..-.+++|+.|+.+++||+++.+.+...++....+.+.. |.++++
T Consensus 193 ~~~e~~v~sle~h-----p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~ 251 (825)
T KOG0267|consen 193 KSHEGKVQSLEFH-----PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGK 251 (825)
T ss_pred ccccccccccccC-----chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCce
Confidence 3222223333354 7888899999999999999999888776665533333322 566655
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.9e-19 Score=163.22 Aligned_cols=240 Identities=14% Similarity=0.258 Sum_probs=169.1
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCC----CcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
++.|.+.|+.+|+|+.|++|+|||... ..+...++.|.+++.. +.|.++.-
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~r------------------V~WAhPEf------- 72 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWR------------------VVWAHPEF------- 72 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEE------------------EEecCccc-------
Confidence 459999999999999999999999543 3456667766665554 44544432
Q ss_pred CcEEEEEeCCCeEEEEEccCC-------e-eeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCC------
Q 006808 86 SSLLVLGTGGGDVLALAVSAG-------Q-LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG------ 149 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~-------~-~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~------ 149 (630)
|+.+++|+.|+++.||.-... + ...+.+....+.|+++.|.| -|-.+++++.||.++||+....
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 889999999999999976321 1 11223345678899999999 4667999999999999986533
Q ss_pred ceeEEee-------cCCCCeEEEEEccC---CCEEEEeC-------CeEEEEECCCC----ceeeEeecCCCCeEEEEEe
Q 006808 150 SLLGKFR-------ASTKGISCMAVSSD---GKMLATAA-------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFS 208 (630)
Q Consensus 150 ~~~~~~~-------~~~~~v~~l~~~p~---~~~l~~~~-------g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~s 208 (630)
.....++ .+..+..|+.|+|. ..+||+|+ +.++||....+ ..+.++.+|+.+|+.++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 2222233 34457789999983 46888887 37888866543 3466788999999999999
Q ss_pred eCC----cEEEEEeeCCCeEEEEEcCCCc------------c---ccceeeeee-cCCceeeeeEEecCCccCCCCCEEE
Q 006808 209 DNG----KYVLSSAVGERYIALWRTDGVK------------K---QSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 209 p~~----~~l~~~~~~d~~i~vwd~~~~~------------~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
|+- ..|++++ .|| |+||.+.... . .....+..+ .|...+..+.+ + -.|..|+
T Consensus 233 Pn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w-N-----mtGtiLs 304 (361)
T KOG2445|consen 233 PNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW-N-----MTGTILS 304 (361)
T ss_pred cccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE-e-----eeeeEEe
Confidence 963 3455555 799 9999987421 0 001112222 34445555444 3 5789999
Q ss_pred EEecCCcEEEEEcC
Q 006808 269 AISETGVCYIWYGQ 282 (630)
Q Consensus 269 s~s~dg~i~iwd~~ 282 (630)
+.+.||.|++|...
T Consensus 305 StGdDG~VRLWkan 318 (361)
T KOG2445|consen 305 STGDDGCVRLWKAN 318 (361)
T ss_pred ecCCCceeeehhhh
Confidence 99999999999754
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=171.49 Aligned_cols=256 Identities=14% Similarity=0.133 Sum_probs=186.0
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec
Q 006808 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (630)
Q Consensus 120 v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~ 197 (630)
..|+.|++.|.++++|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++ ..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 78999999999999999999999999999998889999999999999999999999999 799999999999988887
Q ss_pred CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCce---eeeeEEecCCccCCCCCEEEEEecCC
Q 006808 198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 198 h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
...+|+.+.|+|.....+.++-.+..-.+-++..+... .+....... ...+..| ++.|++|++|+..|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~Lp~d~d~dln~sas~~~f-----dr~g~yIitGtsKG 175 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VLPKDDDGDLNSSASHGVF-----DRRGKYIITGTSKG 175 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----eccCCCccccccccccccc-----cCCCCEEEEecCcc
Confidence 77899999999966544444434555566666553321 222222211 1122224 48999999999999
Q ss_pred cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccC----ceeeEEeccCC
Q 006808 275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK----PSFQKILVNSG 350 (630)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~----~~~~~~~~h~~ 350 (630)
.+.++|..+.+.+..++.......-.+.++..+. .+++-+.|.+++.|+.+-+..-|.... ..++.+ ...-
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~----~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~ 250 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGR----FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKL 250 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCc----EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hhhh
Confidence 9999999999888777665522222233556666 888889999999888774433322111 111111 1223
Q ss_pred CcEEEeecCCcceeeccccceeccccceeccc--eeecccCC
Q 006808 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRAN 390 (630)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~ 390 (630)
.-.++.||.||.|+.++.+.-..+++|+-..+ ++.+....
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 45688999999999666666788999986444 66665443
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-18 Score=173.75 Aligned_cols=241 Identities=12% Similarity=0.177 Sum_probs=188.4
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+++| +++||+.+.+.||.+-.+|.|-||++..+-+.... ..|+.+..+..++|..
T Consensus 24 ~Ps~I--~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g~~drsIE~L~W~e------ 79 (691)
T KOG2048|consen 24 KPSEI--VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHGPEDRSIESLAWAE------ 79 (691)
T ss_pred eccce--EEEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------EecCCCCceeeEEEcc------
Confidence 36788 66799999999999999999999999876554322 1266677888999984
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE--eecCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST 159 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~ 159 (630)
+..|++.+.+|.|.-||+.+++....+. ...+.|++++.+|.+..++.|+.||.+..++...++.... |...+
T Consensus 80 ----~~RLFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~ 154 (691)
T KOG2048|consen 80 ----GGRLFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK 154 (691)
T ss_pred ----CCeEEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc
Confidence 6679999999999999999999886664 5778999999999999999999999888888877765443 44456
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee--------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
+.|.+++|+|++..+++|+ |.|++||..++..+.... +...-|.++.|-.++ .++++.+ -|+|.+||.
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS-~G~V~FWd~ 232 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS-AGTVTFWDS 232 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC-CceEEEEcc
Confidence 7999999999999999998 889999999988665221 122347788887665 4666664 899999999
Q ss_pred CCCccccceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 230 DGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
..+... .... |.+.+ .++... +++.++++++.|+.|.-|...+.
T Consensus 233 ~~gTLi-----qS~~~h~adV-l~Lav~-----~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 233 IFGTLI-----QSHSCHDADV-LALAVA-----DNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred cCcchh-----hhhhhhhcce-eEEEEc-----CCCCeEEEccCCCceEEEEecCC
Confidence 988754 1222 33333 344444 78899999999999988876555
No 140
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.7e-20 Score=167.37 Aligned_cols=188 Identities=14% Similarity=0.211 Sum_probs=157.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC------CC-----------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------LT----------- 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~------~~----------- 148 (630)
..++.+++.|.+.+||.+.+|.++.++. ||.+.|++++|++.+.++++++.|++..||.. ..
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 4478889999999999999999997775 89999999999999999999999999999962 11
Q ss_pred -------------------C----ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeE
Q 006808 149 -------------------G----SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR 203 (630)
Q Consensus 149 -------------------~----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~ 203 (630)
+ .++..+.+|.+.|.+..|-..|+.+++++ .+..+||+++|.++..+.||....+
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 0 13455778999999999999999999999 7999999999999999999999999
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.++-+|..+.+++++ .|.+.++||++..-. .+..+..+...+....|. -+..+++|+.|.+|+|||+++
T Consensus 319 HcstHptQrLVvTsS-rDtTFRLWDFReaI~----sV~VFQGHtdtVTS~vF~------~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSS-RDTTFRLWDFREAIQ----SVAVFQGHTDTVTSVVFN------TDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ccccCCcceEEEEec-cCceeEeccchhhcc----eeeeecccccceeEEEEe------cCCceeecCCCceEEEeeecc
Confidence 999999988877776 799999999985432 233444555555666664 457799999999999999976
Q ss_pred cc
Q 006808 284 IE 285 (630)
Q Consensus 284 ~~ 285 (630)
.+
T Consensus 388 MR 389 (481)
T KOG0300|consen 388 MR 389 (481)
T ss_pred cc
Confidence 64
No 141
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.9e-20 Score=181.95 Aligned_cols=234 Identities=15% Similarity=0.229 Sum_probs=182.9
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCC--cEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+...+|+.|++||.|-+|++|+...+ -+..++..|...+. |++....+ ..++
T Consensus 80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk------------------cla~~ak~--------~~lv 133 (735)
T KOG0308|consen 80 ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK------------------CLAYIAKN--------NELV 133 (735)
T ss_pred HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe------------------eeeecccC--------ceeE
Confidence 55667889999999999999999877 56667766655444 44443222 6789
Q ss_pred EEEeCCCeEEEEEccCCee--e--------EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 90 VLGTGGGDVLALAVSAGQL--K--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~--~--------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
++|+-|+.|++||+.++.. + ..+..|+..+|++++.++.|..|++|+..+.+++||.++++.+..+++|.
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT 213 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT 213 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc
Confidence 9999999999999997722 1 12223788899999999999899999999999999999999999999999
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
..|.++..++||+.+++++ |+|++||+...+++.++..|...|.++..+|+-.++++|+ .||.|..=|+++....
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~~~-- 290 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNPAKS-- 290 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCCchhh--
Confidence 9999999999999999998 9999999999999999999999999999999999999998 6999999999886432
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..+..-.++- ...... ....-+-+++.|+.|+-|...
T Consensus 291 tlick~daPv--~~l~~~------~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 291 TLICKEDAPV--LKLHLH------EHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred eEeecCCCch--hhhhhc------cccCCceeeeccccceecCCc
Confidence 1222222221 111111 112223556677788888643
No 142
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=9.6e-20 Score=159.82 Aligned_cols=192 Identities=17% Similarity=0.220 Sum_probs=144.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCc--eeEEeecCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~ 159 (630)
+..|++|+.|+.|+|+.++.+. .....+.||++||..++|.. .|.+|++++.||.|.||.-..++ ....+..|.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 7789999999999999998765 23344579999999999965 79999999999999999987763 344567789
Q ss_pred CCeEEEEEccC--CCEEEEeC--CeEEEEECCCC---ceeeEeecCCCCeEEEEEeeC---C-----------cEEEEEe
Q 006808 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN---G-----------KYVLSSA 218 (630)
Q Consensus 160 ~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~---~-----------~~l~~~~ 218 (630)
..|++++|.|. |-.|++++ |.|.+++.++. ...+....|...|++++|.|. | +.|+++|
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 99999999995 55677776 99999887654 223345689999999999986 4 5688888
Q ss_pred eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.|..|+||+...+.-. .-..+..+...++-+++.+.. .--..+|++++.||++.||-..
T Consensus 183 -cDn~VkiW~~~~~~w~---~e~~l~~H~dwVRDVAwaP~~-gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 183 -CDNLVKIWKFDSDSWK---LERTLEGHKDWVRDVAWAPSV-GLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred -CccceeeeecCCcchh---hhhhhhhcchhhhhhhhcccc-CCCceeeEEecCCCcEEEEEec
Confidence 5999999999886422 222244444444444444110 0113689999999999999754
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3e-19 Score=170.23 Aligned_cols=245 Identities=14% Similarity=0.163 Sum_probs=187.7
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..|| -+++|.|+|. .+++++....++.||+.+.+....-. . .|+.......+.-.+.
T Consensus 257 ~fPi--~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~-~--------------~g~e~~~~e~FeVShd----- 314 (514)
T KOG2055|consen 257 KFPI--QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP-P--------------YGVEEKSMERFEVSHD----- 314 (514)
T ss_pred cCcc--ceeeecCCCceEEEecccceEEEEeeccccccccccC-C--------------CCcccchhheeEecCC-----
Confidence 4688 5569999998 88899888899999999887654211 1 1222111111221222
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK- 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~- 160 (630)
+++|++.+..|.|.+....+++.+..+. -.+.|.+++|+.+|+.|++++.+|.|.+||++...+++.|....+
T Consensus 315 ----~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 315 ----SNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred ----CCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 7799999999999999999999886663 558899999999999999999999999999999999999986444
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCC------CceeeEeecCCCCeEEEEEeeCCcEEEEEee-CCCeEEEEEcCC
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG 231 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~------~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~-~d~~i~vwd~~~ 231 (630)
.-++++.+++|.+||+|+ |.|.|||..+ .+++.++..-...|+++.|+|+++.|+.++. .+..+++-.+.+
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 446778889999999999 9999999654 3566666666778999999999999888763 245789988877
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.... ........+-..++|+.|+ |.+.++|.|...|++.+|.+.
T Consensus 469 ~TVF--sNfP~~n~~vg~vtc~aFS-----P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVF--SNFPTSNTKVGHVTCMAFS-----PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeee--ccCCCCCCcccceEEEEec-----CCCceEEeecCCCceeeEeec
Confidence 5422 0111122344567888888 999999999999999999874
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=9.8e-19 Score=166.67 Aligned_cols=282 Identities=14% Similarity=0.114 Sum_probs=197.5
Q ss_pred CCcccceeEeEECCCC--CEEEEeeCCCcEEEEECCCCc----EEEEecccccccccccccccccccccccceeeEEecc
Q 006808 2 GSSNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg--~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
.+++| .+++|+|.- +++|+|..-|+|-+||+.+.+ -+..+..|..+ ++++.|+|
T Consensus 185 ~~~Ri--t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~------------------Vs~l~F~P 244 (498)
T KOG4328|consen 185 TDRRI--TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGP------------------VSGLKFSP 244 (498)
T ss_pred cccce--EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCcc------------------ccceEecC
Confidence 35677 666999965 588889899999999995322 23444444444 44555555
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCeee--EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-e
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-L 152 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-~ 152 (630)
.+ ...+++.+.||+|++-|+.++..- ... ......+.++.|+.+...++.++.=|...+||++++.. .
T Consensus 245 ~n--------~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 245 AN--------TSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred CC--------hhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 54 567999999999999999876532 122 12345678888998888888888888999999998765 5
Q ss_pred EEeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCce----eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
..+..|...|.+++++|... ++++++ ++++|||++.-.. +-....|...|.++.|||.+-.|++.+ .|..|+
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IR 394 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIR 394 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceE
Confidence 56777888999999999654 567777 8999999986432 223346999999999999988899988 699999
Q ss_pred EEEcCC-CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc-cCceeEEeeccCCC
Q 006808 226 LWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKILSSSEDVN 303 (630)
Q Consensus 226 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 303 (630)
|||..- ..... ....+.|+...-..+.--+..|.|+..+|++|..-..|-|||...++.+.. +.|....+++...+
T Consensus 395 v~dss~~sa~~~--p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~ 472 (498)
T KOG4328|consen 395 VFDSSCISAKDE--PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEF 472 (498)
T ss_pred EeecccccccCC--ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceee
Confidence 999841 11110 122333433221111100112338999999999988999999988886666 56666677766666
Q ss_pred cccccchhhhhhhccc
Q 006808 304 SKSQKSATAAIFAAKL 319 (630)
Q Consensus 304 ~~~~~~~~~~i~~~~~ 319 (630)
.|... .+++|+.
T Consensus 473 HP~~~----~~~aG~~ 484 (498)
T KOG4328|consen 473 HPMRD----TLAAGGN 484 (498)
T ss_pred ccccc----ceeccCC
Confidence 66554 4555554
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=4.7e-19 Score=168.81 Aligned_cols=206 Identities=14% Similarity=0.201 Sum_probs=159.5
Q ss_pred cccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee---eEEccCCCCCCEEEEEEec-CCCEEEEEeCCC
Q 006808 64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFAT-HGSCIYSAGADG 139 (630)
Q Consensus 64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg 139 (630)
....+++++|+|..+ ..++++|...|+|-+||+.+.+. -..+...|+++|.++.|+| +-..+++.|.||
T Consensus 185 ~~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 185 TDRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred cccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 356899999999874 37899999999999999953321 1234457999999999999 445799999999
Q ss_pred cEEEEeCCCCceeE--EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce-eeEeecCCCCeEEEEEeeCCcEE
Q 006808 140 MVCEIDPLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 140 ~v~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l 214 (630)
+|+.-|+..+..-. ........+..+.|+.+...++++. |...+||++++.. ...+.-|...|++++++|-..++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 99999998764332 2332445778889988777777776 9999999998764 66677788899999999988776
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
+++++-|++.+|||++.-.......+... .+...+..++|+ |.+..|++.+.|..|+|||..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFS-----Ps~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFS-----PSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEc-----CCCCceEeeccCCceEEeecc
Confidence 66666899999999987654421123333 345566778887 888889999999999999974
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=4.9e-18 Score=154.43 Aligned_cols=248 Identities=18% Similarity=0.181 Sum_probs=178.4
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.++.+.|.+. .+.|+++++||.+++|++........+ .|..++.+++|.+ ...+++|+.||.|+.+|+
T Consensus 15 ~IS~v~f~~~---------~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 15 GISSVKFSPS---------SSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ceeeEEEcCc---------CCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence 4555666533 567888889999999999988665444 5889999999987 457999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
.++... .+..|..+|.|+.+.+....+++|+ ++|++||.+.......+. ....|.++..+ |..|++++ .++.+
T Consensus 83 n~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~-~~r~v 157 (323)
T KOG1036|consen 83 NTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGT-SDRKV 157 (323)
T ss_pred cCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEee-cCceE
Confidence 888654 4556899999999999878888888 899999998765555554 23477777655 67788877 59999
Q ss_pred EEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCc
Q 006808 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (630)
.+||+++.... ....-..-...++++++- |++.-.++++-||+|.+=.+.........+ .+..|....
T Consensus 158 ~iyDLRn~~~~---~q~reS~lkyqtR~v~~~-----pn~eGy~~sSieGRVavE~~d~s~~~~skk---yaFkCHr~~- 225 (323)
T KOG1036|consen 158 LIYDLRNLDEP---FQRRESSLKYQTRCVALV-----PNGEGYVVSSIEGRVAVEYFDDSEEAQSKK---YAFKCHRLS- 225 (323)
T ss_pred EEEEcccccch---hhhccccceeEEEEEEEe-----cCCCceEEEeecceEEEEccCCchHHhhhc---eeEEeeecc-
Confidence 99999987643 111112234455666655 777778899999998875444332222222 111111100
Q ss_pred ccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.....+.| +|.+++|+|-...+ +||+.||.+.+|+..++
T Consensus 226 ----------------------~~~~~~~y----------------PVNai~Fhp~~~tf-aTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 226 ----------------------EKDTEIIY----------------PVNAIAFHPIHGTF-ATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ----------------------cCCceEEE----------------EeceeEeccccceE-EecCCCceEEEccCcch
Confidence 11112233 79999999998888 99999999999998763
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.8e-18 Score=163.88 Aligned_cols=285 Identities=12% Similarity=0.151 Sum_probs=197.6
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe--EEEEEcc
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVS 104 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--v~iwd~~ 104 (630)
.++++||...-.....+..+.. ...+..+.|.. .++|++++..|. +++|.-.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~----------------~pg~~s~~w~~----------~n~lvvas~~gdk~~~~~~K~ 65 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTA----------------EPGDFSFNWQR----------RNFLVVASMAGDKVMRIKEKD 65 (673)
T ss_pred CceEEeecccccCccccccCCC----------------CCcceeeeccc----------cceEEEeecCCceeEEEeccc
Confidence 4799999876655544443222 12356677765 344666665554 7788643
Q ss_pred CC--eee-EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--C
Q 006808 105 AG--QLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--G 179 (630)
Q Consensus 105 ~~--~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g 179 (630)
.. +.. .....+ ..-.|++......++++|+..++|+|||++...+.+.+++|...|+++.++-...+||+++ |
T Consensus 66 g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 66 GKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred CCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC
Confidence 32 121 111112 2344555555567899999999999999998888888999999999999999999999998 8
Q ss_pred eEEEEECCCCceeeEeecCCC-CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCC
Q 006808 180 QLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (630)
Q Consensus 180 ~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (630)
.|.|..+.++..-.+|....+ .|+-+.|+|..+++++..+++|.|.+||+....+. ..+.-.|. ....-+||++
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~~~~Hs-AP~~gicfsp- 218 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHASEAHS-APCRGICFSP- 218 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cchhhhcc-CCcCcceecC-
Confidence 999999999988888875434 46689999999998888888999999999887644 22222233 3445556651
Q ss_pred ccCCCCCEEEEEecCCcEEEEEcCCcccccccC--ceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcC
Q 006808 259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (630)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~ 336 (630)
.+...|++.+.|+.|.+||..+........ .+-..+. |++.+. ++++|+..|.+.. .+-.
T Consensus 219 ---sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstva----f~~~G~----~L~aG~s~G~~i~-------YD~R 280 (673)
T KOG4378|consen 219 ---SNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVA----FSECGT----YLCAGNSKGELIA-------YDMR 280 (673)
T ss_pred ---CccceEEEecccceEEEeecccccccceeeecCCcceee----ecCCce----EEEeecCCceEEE-------Eecc
Confidence 345778889999999999987654433221 1112222 677777 8888888553333 2223
Q ss_pred ccCceeeEEeccCCCcEEEeecCCcc
Q 006808 337 LLKPSFQKILVNSGEDINLNCSQDGV 362 (630)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (630)
.....+..+..|...|.+++|-|.-.
T Consensus 281 ~~k~Pv~v~sah~~sVt~vafq~s~t 306 (673)
T KOG4378|consen 281 STKAPVAVRSAHDASVTRVAFQPSPT 306 (673)
T ss_pred cCCCCceEeeecccceeEEEeeecce
Confidence 34556777888999999999988753
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.7e-18 Score=174.59 Aligned_cols=263 Identities=14% Similarity=0.092 Sum_probs=194.4
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC-eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.+.++|.+. +.+|++|+.+|.|++|+.... +....+ ..+...|.+++. .+.+|++|+.+++|..|.+
T Consensus 16 ~t~i~~d~~---------gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 16 LTLICYDPD---------GEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIAC--YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred eEEEEEcCC---------CCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEee--cccceEEeeccceEEEeeC
Confidence 455666554 779999999999999998776 333233 236777888876 4558999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
.+++.-..+....-++.+++|+.+|+++|.|+ -.|++.+.........+.+|.++|.++.|+|.+.+|++++ .||.+
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v 162 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKV 162 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceE
Confidence 88876545555567899999999999999999 5899999999988999999999999999999999999988 59999
Q ss_pred EEEEcCCCccccce-ee-eeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEe-ecc
Q 006808 225 ALWRTDGVKKQSAS-CV-LAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-SSE 300 (630)
Q Consensus 225 ~vwd~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~ 300 (630)
++|++..+...... .+ ...+.. ..+.....|+ |+|..+++.+.|+.|.+|+..++............. .+.
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-----PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeec-----CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 99999987643100 00 011111 3344555565 999999999999999999998887665433322111 223
Q ss_pred CCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCccee
Q 006808 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (630)
..++|.++ ||+++..+|.+-+|+ ... .+. ......|.+++|.|++.-|
T Consensus 238 ~~wsPnG~----YiAAs~~~g~I~vWn-----v~t------~~~-~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 238 LQWSPNGK----YIAASTLDGQILVWN-----VDT------HER-HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEEcCCCc----EEeeeccCCcEEEEe-----ccc------chh-ccccceeEEEecCCCCCee
Confidence 33889888 999999977444433 111 111 1234568999999998876
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.2e-19 Score=189.54 Aligned_cols=247 Identities=15% Similarity=0.196 Sum_probs=180.2
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC---Cee--eEEccCCCCCCEEEEEEecCC-CEEEEEeCC
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA---GQL--KWRLSDCHPGGVSAISFATHG-SCIYSAGAD 138 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~---~~~--~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d 138 (630)
......++|.+...+. ..+|+.|..||.|.+||... +.. +......|.+.|.++.|++.. +.+++|+.|
T Consensus 64 ~~rF~kL~W~~~g~~~-----~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHS-----HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred cccceeeeecccCCCc-----cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC
Confidence 4567889998876432 35789999999999999876 221 122335699999999999954 589999999
Q ss_pred CcEEEEeCCCCceeEEee--cCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCCC--CeEEEEEeeCC
Q 006808 139 GMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNG 211 (630)
Q Consensus 139 g~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~~ 211 (630)
|.|.|||+...+.-.++. .....|.+++|+.. ..+|++++ |.+.|||++..+.+-.+..|.+ .+..+.|+|++
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence 999999998754433332 13458999999984 45677776 7999999999988877766654 47889999987
Q ss_pred c-EEEEEeeCCC--eEEEEEcCCCccccceeeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 212 K-YVLSSAVGER--YIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 212 ~-~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
. .+++++.+|+ .|.+||++..... ...+ .|...++...|.. .|..++++++.|++|.+|+..+++.+
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP----~k~~~~H~~GilslsWc~-----~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSP----LKILEGHQRGILSLSWCP-----QDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCc----hhhhcccccceeeeccCC-----CCchhhhcccCCCCeeEecCCCceEe
Confidence 4 4555543344 7999999876533 2233 4555666655554 56699999999999999999999998
Q ss_pred cccCceeEEeeccCCCcccccchhhhhhhccccccccCCcee
Q 006808 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (630)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 329 (630)
..... ...++....|.|... ..+++++++|.|.++...
T Consensus 290 ~~~p~-~~nW~fdv~w~pr~P---~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 290 GELPA-QGNWCFDVQWCPRNP---SVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred eecCC-CCcceeeeeecCCCc---chhhhheeccceeeeeee
Confidence 87755 334443333555443 278899999987776543
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.2e-17 Score=148.85 Aligned_cols=268 Identities=11% Similarity=0.073 Sum_probs=178.0
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeE---EccCCCCCCEEEEEEec--CCCEEEEEe
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFAT--HGSCIYSAG 136 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~---~~~~~h~~~v~~~~~s~--~g~~l~s~~ 136 (630)
+|. ..+.|+.|... |+.+++|+.|++|+|||......-+ .-.+.|.+.|..+.|.+ -|+.+++++
T Consensus 11 ~h~-DlihdVs~D~~---------GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 11 GHK-DLIHDVSFDFY---------GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred CCc-ceeeeeeeccc---------CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 444 35677877776 7789999999999999975443221 22357999999999955 588899999
Q ss_pred CCCcEEEEeCC---------CCceeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCC------ceeeEee-
Q 006808 137 ADGMVCEIDPL---------TGSLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH------KKMQKFS- 196 (630)
Q Consensus 137 ~dg~v~iwd~~---------~~~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~------~~~~~~~- 196 (630)
.|+++.||.-. ......++......|+.+.|.|. |-.+|+++ |.++||+.... .....+.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 99999999742 11234456667789999999994 66788877 99999976432 2222222
Q ss_pred ------cCCCCeEEEEEeeC---CcEEEEEeeCC-----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC
Q 006808 197 ------GHPGAVRFMTFSDN---GKYVLSSAVGE-----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (630)
Q Consensus 197 ------~h~~~v~~l~~sp~---~~~l~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (630)
.+..+..|+.|+|. ..+|++++ .+ +.++||........ ...+..+......+..++|.+..- .
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs-~e~a~~~~~~~Iye~~e~~rK-w~kva~L~d~~dpI~di~wAPn~G-r 237 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS-DEDAPHLNKVKIYEYNENGRK-WLKVAELPDHTDPIRDISWAPNIG-R 237 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEc-ccCCccccceEEEEecCCcce-eeeehhcCCCCCcceeeeeccccC-C
Confidence 35667889999974 35677765 33 37888887665422 123333444555566666652110 1
Q ss_pred CCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCcee
Q 006808 263 AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF 342 (630)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~ 342 (630)
.-..||+++.|| |+||++.....--..+ ....+..- + + +....+
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~e---------e~~~~~~~------------~-----~---------l~v~~v 281 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEE---------EVLAPDLM------------T-----D---------LPVEKV 281 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhh---------cccCCCCc------------c-----c---------cceEEe
Confidence 235789999999 9999985432100000 00011110 0 1 111223
Q ss_pred eEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 343 QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..+..|.++|+.+.|.--|..| .|.+.||.+|+|..
T Consensus 282 s~~~~H~~~VWrv~wNmtGtiL-sStGdDG~VRLWka 317 (361)
T KOG2445|consen 282 SELDDHNGEVWRVRWNMTGTIL-SSTGDDGCVRLWKA 317 (361)
T ss_pred eeccCCCCceEEEEEeeeeeEE-eecCCCceeeehhh
Confidence 3455899999999999999999 99999999999964
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=7.7e-18 Score=160.17 Aligned_cols=206 Identities=14% Similarity=0.172 Sum_probs=156.6
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeee--------------------EEccCCCCCCEEEEEEe
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--------------------WRLSDCHPGGVSAISFA 126 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~--------------------~~~~~~h~~~v~~~~~s 126 (630)
...|+.|.....+.. ..++++++|+.+..|.|||+.--..+ .....+|+..|.+++|+
T Consensus 175 fPLC~ewld~~~~~~--~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSG--GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cchhhhhhhcCCCCC--CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 346888876622111 12889999999999999998532110 00113688899999998
Q ss_pred cCC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCcee-eEeecCCCC
Q 006808 127 THG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGA 201 (630)
Q Consensus 127 ~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~-~~~~~h~~~ 201 (630)
..- +.|++||.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+ ++|.+.|.+..... ..++ ..+.
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~ 331 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGE 331 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccc
Confidence 754 4589999999999999999999999999999999999999 466788888 89999999853222 2222 4578
Q ss_pred eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 202 v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|-.++|.|.....+.++..||+++-+|++.... +++.+..+...+..++++. ....++++++.|+.+++|++
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~----~vwt~~AHd~~ISgl~~n~----~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK----PVWTLKAHDDEISGLSVNI----QTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCC----ceeEEEeccCCcceEEecC----CCCcceeeccccceEEEEee
Confidence 999999998876666666899999999998753 4666665666677777662 33578999999999999997
Q ss_pred CC
Q 006808 282 QN 283 (630)
Q Consensus 282 ~~ 283 (630)
..
T Consensus 404 ~~ 405 (463)
T KOG0270|consen 404 DV 405 (463)
T ss_pred cC
Confidence 43
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=2.7e-18 Score=169.41 Aligned_cols=121 Identities=21% Similarity=0.401 Sum_probs=95.3
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..|+++ .|+| +..+||+||.|..|+||.+..|.... +.. +...-|+....+.|+.|++..
T Consensus 80 d~VtDl--~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-LSa-----------pe~~~g~~~~~vE~l~fHpTa----- 140 (1012)
T KOG1445|consen 80 DQVTDL--GFSPFADELLATCSRDEPVKIWKLPRGHSQK-LSA-----------PEIDVGGGNVIVECLRFHPTA----- 140 (1012)
T ss_pred ceeecc--CccccchhhhhcccCCCeeEEEecCCCcccc-cCC-----------cceeecCCceEEEEeecccCc-----
Confidence 456566 8999 55689999999999999987543322 211 111236667788899998874
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
.-|+..+..|.++|||+.+++....+ .+|...|.+..|+.||..+++++.|..|+|||.+.
T Consensus 141 ----Dgil~s~a~g~v~i~D~stqk~~~el-~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 141 ----DGILASGAHGSVYITDISTQKTAVEL-SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred ----CceEEeccCceEEEEEcccCceeecc-cCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 33666677899999999999988666 48999999999999999999999999999999763
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=6.1e-18 Score=154.81 Aligned_cols=296 Identities=19% Similarity=0.215 Sum_probs=196.6
Q ss_pred cccceeEeEECC-----CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 4 SNIRDILTSFSP-----ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 4 ~~V~~~~~~fs~-----dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.|| ..++|++ .-+.+|+.+. +++.+|+.....-+..++.... ..+....+ -++|.-...
T Consensus 39 ~~I--~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D------------~d~~Esfy-tcsw~yd~~ 102 (385)
T KOG1034|consen 39 KPI--FGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYAD------------EDHDESFY-TCSWSYDSN 102 (385)
T ss_pred Ccc--ceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccC------------CCCCcceE-EEEEEecCC
Confidence 467 4448875 2356777765 5889998754332222221111 01222223 345654332
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEee-
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR- 156 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~- 156 (630)
. +.-++++|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|+. ++++++|.|..|++|++++..|+..|-
T Consensus 103 ~-----~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 103 T-----GNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred C-----CCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 1 1567888889999999999999988665 5899999999999965 678999999999999999999998865
Q ss_pred --cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce------e----------------e------EeecCCCCeEE
Q 006808 157 --ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK------M----------------Q------KFSGHPGAVRF 204 (630)
Q Consensus 157 --~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~------~----------------~------~~~~h~~~v~~ 204 (630)
+|...|.++.|+++|.++++++ .++++|++...+. . . +-..|...|-|
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 5888999999999999999998 7999999973211 0 0 11235555666
Q ss_pred EEEeeCCcEEEEEeeCCCeEEEEEcCC-Ccc-----cccee---eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 205 MTFSDNGKYVLSSAVGERYIALWRTDG-VKK-----QSASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 205 l~~sp~~~~l~~~~~~d~~i~vwd~~~-~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
+.|- |.++++-+ .++.|..|..-. .+. .+..+ ...+..+...+..+-| .|+|-+++||.|...|.
T Consensus 257 vrw~--gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf---~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 257 VRWF--GDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF---AFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHH--hhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE---eecHHHHHHhhccCCCc
Confidence 6665 67888877 488999998722 111 11111 1122222222222222 24577899999999999
Q ss_pred EEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEE
Q 006808 276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (630)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~ 355 (630)
+++||+++-+... .+ .... + .....|.+.
T Consensus 331 v~vwdL~~~ep~~---~t--tl~~----s------------------------------------------~~~~tVRQ~ 359 (385)
T KOG1034|consen 331 VYVWDLDNNEPPK---CT--TLTH----S------------------------------------------KSGSTVRQT 359 (385)
T ss_pred EEEEECCCCCCcc---Cc--eEEe----c------------------------------------------cccceeeee
Confidence 9999997665420 00 0000 0 111257888
Q ss_pred eecCCcceeeccccceecccccee
Q 006808 356 NCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 356 ~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+||-||.+| +....|+++-.|+.
T Consensus 360 sfS~dgs~l-v~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 360 SFSRDGSIL-VLVCDDGTVWRWDR 382 (385)
T ss_pred eecccCcEE-EEEeCCCcEEEEEe
Confidence 999999999 66666999888875
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=151.84 Aligned_cols=189 Identities=21% Similarity=0.293 Sum_probs=151.7
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+.+-...++.++++++.|..|.+|++. |+.+..+............+|+ +++
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~---------------------------GRF 242 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD---------------------------GRF 242 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC---------------------------CcE
Confidence 445677788999999999999999998 9988888766655555555655 899
Q ss_pred EEEEeCCCeEEEEEccC---Cee-----eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-------CceeE
Q 006808 89 LVLGTGGGDVLALAVSA---GQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLG 153 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~---~~~-----~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-------~~~~~ 153 (630)
+++++..-.|++|.+-- |.. +.. +.||.+.|..++|+++...+++++.||++++||+.- .+.++
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhhe-eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 99999999999999742 211 222 368999999999999999999999999999999752 22222
Q ss_pred Ee----ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 154 KF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 154 ~~----~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
+. ....+....++.+|.|..|+.+. ..+++|..++|+....+ ..|...|++++|+++|++++++| |+.++++
T Consensus 322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv~ 399 (420)
T KOG2096|consen 322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRVI 399 (420)
T ss_pred cCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeeee
Confidence 22 12233445899999999999988 69999999998876666 46899999999999999999986 8999998
Q ss_pred E
Q 006808 228 R 228 (630)
Q Consensus 228 d 228 (630)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 6
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=5.9e-18 Score=159.18 Aligned_cols=258 Identities=14% Similarity=0.117 Sum_probs=163.4
Q ss_pred cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC--------C--------CceeEEeecCCCCeEEEEEccCCCEEEE
Q 006808 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------T--------GSLLGKFRASTKGISCMAVSSDGKMLAT 176 (630)
Q Consensus 113 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 176 (630)
+..|...|+++.|+|+|..+++|+.+|.|.+|-.. + ......+.+|...|+.++|+|++.++++
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 34799999999999999999999999999999754 2 2234456778899999999999999999
Q ss_pred eC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee--eee--ecC--Cce
Q 006808 177 AA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC--VLA--MEH--PAV 248 (630)
Q Consensus 177 ~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~--~~~--~~~--~~~ 248 (630)
++ +.+++||+..|.....+..|...+..++|.|-++|+++-++ |+..+.+.+...+...... +.. ..+ .+.
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~-dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSS-DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhcc-CcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 98 89999999999999999999999999999999999999884 8877777765543221000 000 001 111
Q ss_pred eee-------eEEecCCccCCCCCEEEEEec----CCc-----EEEEEcCCcccc----cccCceeEEee-ccCCCc--c
Q 006808 249 FMD-------CRCIDNGGVDDAGLYVLAISE----TGV-----CYIWYGQNIEEL----RNTKATKILSS-SEDVNS--K 305 (630)
Q Consensus 249 ~~~-------~~~~~~~~~~~~~~~l~s~s~----dg~-----i~iwd~~~~~~~----~~~~~~~~~~~-~~~~~~--~ 305 (630)
... -.+|....|+|+|.++++.+. .|. .++|+-+..+.- ...+.....+. |...|- |
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp 299 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRP 299 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecc
Confidence 111 012223345699999998653 333 355554322211 11111111221 111110 0
Q ss_pred ccc------chhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 306 SQK------SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 306 ~~~------~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
... -+...+++....+.+++|+ +-...|.+---+.|...++.++|++||.+| +..|.||=..+-.+
T Consensus 300 ~~~~~~~~~lpyrlvfaiAt~~svyvyd-------tq~~~P~~~v~nihy~~iTDiaws~dg~~l-~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 300 LSSEKFLFVLPYRLVFAIATKNSVYVYD-------TQTLEPLAVVDNIHYSAITDIAWSDDGSVL-LVSSTDGFCSLVTF 371 (434)
T ss_pred ccccccccccccceEEEEeecceEEEec-------cccccceEEEeeeeeeeecceeecCCCcEE-EEeccCCceEEEEE
Confidence 000 0111222222222233322 233345455556899999999999999999 66777876655433
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=2.6e-17 Score=163.05 Aligned_cols=244 Identities=17% Similarity=0.224 Sum_probs=173.2
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEE--ecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..| +.+.|.|-...|++++.|.++++||+.++++... +.+|.+.+.+.+|.+. +
T Consensus 101 nAi--fDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~------------------n---- 156 (720)
T KOG0321|consen 101 NAI--FDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT------------------N---- 156 (720)
T ss_pred cee--EeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC------------------C----
Confidence 456 4559999556889999999999999999998776 8888888887777765 1
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCee--e----EEc--------------------cCCCCCCEEE---EEEecCCCEE
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQL--K----WRL--------------------SDCHPGGVSA---ISFATHGSCI 132 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~--~----~~~--------------------~~~h~~~v~~---~~~s~~g~~l 132 (630)
...+++|+.||.|.|||++-... . ..+ ..+|...|.+ +.+..|...|
T Consensus 157 ----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tl 232 (720)
T KOG0321|consen 157 ----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTL 232 (720)
T ss_pred ----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecccee
Confidence 56789999999999999964320 0 000 0134444555 5556688899
Q ss_pred EEEeC-CCcEEEEeCCCCceeE--------EeecC---CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc--eeeEee
Q 006808 133 YSAGA-DGMVCEIDPLTGSLLG--------KFRAS---TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFS 196 (630)
Q Consensus 133 ~s~~~-dg~v~iwd~~~~~~~~--------~~~~~---~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~~~~ 196 (630)
+++|. |+.|++||++...... .+..| .-.+.++.....|.+|++.+ ++|++||+.+.. ++..+.
T Consensus 233 aSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s 312 (720)
T KOG0321|consen 233 ASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS 312 (720)
T ss_pred eeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc
Confidence 99887 9999999998654322 12223 23677888888888776655 999999997643 344455
Q ss_pred cCCCCe--EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 197 GHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 197 ~h~~~v--~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
++...- ..-..+|++.++++++ .|...++|.+.+.... .....+|...+..+.|.+ ..-.-+++++.|.
T Consensus 313 g~~~~sf~vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~~---~~~l~Ght~eVt~V~w~p-----S~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 313 GKLNSSFYVKSELSPDDCSLLSGS-SDEQAYIWVVSSPEAP---PALLLGHTREVTTVRWLP-----SATTPVATCSDDF 383 (720)
T ss_pred CcccceeeeeeecCCCCceEeccC-CCcceeeeeecCccCC---hhhhhCcceEEEEEeecc-----ccCCCceeeccCc
Confidence 443211 1224589999999988 5999999999987755 444556666555555554 2234577889999
Q ss_pred cEEEEEcCCc
Q 006808 275 VCYIWYGQNI 284 (630)
Q Consensus 275 ~i~iwd~~~~ 284 (630)
.++||++..+
T Consensus 384 ~~kiW~l~~~ 393 (720)
T KOG0321|consen 384 RVKIWRLSNG 393 (720)
T ss_pred ceEEEeccCc
Confidence 9999998554
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=1e-17 Score=153.31 Aligned_cols=238 Identities=12% Similarity=0.173 Sum_probs=176.7
Q ss_pred eEeEECCC----CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 9 ILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 9 ~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
..|+|+-+ ..++|.|+.-|.|+|.|+.++++...+.+|..+++.+.+.|.
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-------------------------- 146 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-------------------------- 146 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCC--------------------------
Confidence 34566543 348899999999999999999999999999998888777765
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE---------
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG--------- 153 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~--------- 153 (630)
..+++++|+.|..|++|++++..++..+- .+|...|.++.|+++|.+|+++|.|..+++|++...+...
T Consensus 147 ~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 147 RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 16789999999999999999999875553 5799999999999999999999999999999997432100
Q ss_pred -------------------EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECC-CCc-------------eeeEeecC
Q 006808 154 -------------------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHK-------------KMQKFSGH 198 (630)
Q Consensus 154 -------------------~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~-~~~-------------~~~~~~~h 198 (630)
+-..|...|-|+.|- |.++++-+ +.|..|-.- -++ .+.++.-.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 011244455555554 56777766 899999761 111 12333334
Q ss_pred CCCeEEEEE--eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcE
Q 006808 199 PGAVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (630)
Q Consensus 199 ~~~v~~l~~--sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i 276 (630)
...|.-+.| .|-++.|+.+. ..|.+.+||++...+. ....+........+...+|+ .||..|+..+.|+.|
T Consensus 305 ~c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~-~~ttl~~s~~~~tVRQ~sfS-----~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPP-KCTTLTHSKSGSTVRQTSFS-----RDGSILVLVCDDGTV 377 (385)
T ss_pred ccceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCc-cCceEEeccccceeeeeeec-----ccCcEEEEEeCCCcE
Confidence 445555544 56677888777 6999999999987754 11222333345566667776 899999999999999
Q ss_pred EEEEc
Q 006808 277 YIWYG 281 (630)
Q Consensus 277 ~iwd~ 281 (630)
.-||.
T Consensus 378 wrwdr 382 (385)
T KOG1034|consen 378 WRWDR 382 (385)
T ss_pred EEEEe
Confidence 99985
No 158
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5e-17 Score=151.81 Aligned_cols=311 Identities=13% Similarity=0.103 Sum_probs=208.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+-|+++ .||.+|++||+|+.|..++||++...-.-.+-+... +...|....+.|++|...
T Consensus 56 ~GCiNAl--qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-----------~~~~~H~SNIF~L~F~~~------ 116 (609)
T KOG4227|consen 56 TGCINAL--QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-----------VMEHPHRSNIFSLEFDLE------ 116 (609)
T ss_pred cccccee--eeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-----------eccCccccceEEEEEccC------
Confidence 3557555 999999999999999999999986321111101000 001222356777887764
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccC-CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEe--ecC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKF--RAS 158 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~--~~~ 158 (630)
+.++++|..+|+|...|+.+.+.+..+.. ...+.|..+..+|..+.|++.+.++.|.+||.+..+ .+..+ ...
T Consensus 117 ---N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 ---NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred ---CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 67799999999999999999988755431 223589999999998999999999999999998665 33222 223
Q ss_pred CCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCce-eeE---eecC---CCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 159 TKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQK---FSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 159 ~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~-~~~---~~~h---~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
....+.+.|+|... +|++.+ +-+-+||++..+. +.. +.+- .....++.|+|+|..|++-- ....-.+||
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D 272 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFD 272 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEee
Confidence 44778899999654 556665 7889999876542 211 1222 22346789999999998865 355567788
Q ss_pred cCCCccccceeeeeecCCc------eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCC
Q 006808 229 TDGVKKQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (630)
+.+.+.. ++...|.. ..+..++|. +...+++|+.+=.|++|.+.....-..+......
T Consensus 273 ~~S~R~~----V~k~D~N~~GY~N~~T~KS~~F~------~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~------ 336 (609)
T KOG4227|consen 273 FISQRCF----VLKSDHNPNGYCNIKTIKSMTFI------DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHD------ 336 (609)
T ss_pred eecccce----eEeccCCCCcceeeeeeeeeeee------cceeeeccCcccceEEEecCCCccccCccccCcc------
Confidence 8886644 55666543 123344553 4566999999999999998544332221110000
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
....+ ....+...|-.+++|.+-+..+.|+|...+| +|.+..+++++|.-
T Consensus 337 ---~~~~~-----------------------~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l-~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 337 ---EEEMP-----------------------SEIFIEKELTVLRGHRSVPNQVRFSQHNNLL-VSSGVENSFKLWSD 386 (609)
T ss_pred ---hhhCc-----------------------hhheecceeEEEecccccccceeecCCcceE-eccchhhheecccc
Confidence 00000 0011223345677999999999999999999 89899999999963
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.7e-18 Score=182.92 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=179.3
Q ss_pred EeEECCCCCE----EEEeeCCCcEEEEECCCC------cEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 10 LTSFSPALDY----FAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 10 ~~~fs~dg~~----las~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++|.+.|.. +|.|..||.|.+||...- ..+.++..|.+.+.. +.|+++.
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~g------------------LDfN~~q-- 128 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLG------------------LDFNPFQ-- 128 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceee------------------eeccccC--
Confidence 3489988765 888889999999998652 123444445544443 4444443
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
++++++|+.+|.|.|||+..-+...... ......|.+++|+..-. .|++++.+|.+.|||++..+.+-.+..
T Consensus 129 ------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 129 ------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred ------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence 7799999999999999998866544442 22456799999988544 478888999999999999988877776
Q ss_pred CCC--CeEEEEEccCC-CEEEEeC-----CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEE
Q 006808 158 STK--GISCMAVSSDG-KMLATAA-----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALW 227 (630)
Q Consensus 158 ~~~--~v~~l~~~p~~-~~l~~~~-----g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vw 227 (630)
+.. .+..++|+|++ ..+++++ -.|.+||++.. ..++++.+|...|.++.|.+.+ .++++++ .|+.|.+|
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~w 281 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICW 281 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEe
Confidence 655 57889999975 4566655 38999999865 4677889999999999999877 6777777 79999999
Q ss_pred EcCCCccccceeeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 228 RTDGVKKQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
+..+++.. ..+.. ...+..+.|.. .+...+++++.||.|.||.+....
T Consensus 282 N~~tgEvl-----~~~p~~~nW~fdv~w~p-----r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 282 NPNTGEVL-----GELPAQGNWCFDVQWCP-----RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCceEe-----eecCCCCcceeeeeecC-----CCcchhhhheeccceeeeeeecCC
Confidence 99998733 33333 34455555554 455688889999999999987664
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=2.4e-17 Score=154.34 Aligned_cols=208 Identities=17% Similarity=0.273 Sum_probs=164.0
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
++|| +.++|+| +...+|+||.|.+|.||.+-.+.....+.. ++.. ..|| ...+..+.|+|..
T Consensus 81 t~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte---pvv~-------L~gH-~rrVg~V~wHPtA---- 143 (472)
T KOG0303|consen 81 TAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE---PVVE-------LYGH-QRRVGLVQWHPTA---- 143 (472)
T ss_pred cccc--cccccCccCCceeecCCCCceEEEEECCCcccccCccc---ceEE-------Eeec-ceeEEEEeecccc----
Confidence 5788 7779999 557899999999999999876655443321 1110 1245 3366778898886
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK- 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~- 160 (630)
.+.|++++.|..|.+||+.+|+.+.++. |...|.++.|+.+|.+|++++.|..|++||.++++.+..-.+|.+
T Consensus 144 ----~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 144 ----PNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred ----hhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 6789999999999999999999887763 999999999999999999999999999999999999988777776
Q ss_pred CeEEEEEccCCCEEEEeC-----CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 GISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.-..+.|-.+|.++.+|- ..+-+||..+-.. ..++. ....|.---|.|+.+.++.+|-+|+.|+.|.+...
T Consensus 218 k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 218 KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 556677888888555553 5899999876542 23333 34556666788999999999989999999999876
Q ss_pred cc
Q 006808 233 KK 234 (630)
Q Consensus 233 ~~ 234 (630)
.+
T Consensus 297 ~P 298 (472)
T KOG0303|consen 297 PP 298 (472)
T ss_pred Cc
Confidence 53
No 161
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=8.8e-17 Score=144.97 Aligned_cols=292 Identities=11% Similarity=0.142 Sum_probs=194.0
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+.|+.+ ...+ .|+|+++|+.||.|.|||+++..... -.+......+++-.+. ..+| ...++.+.|.|.+
T Consensus 44 GsvNsL--~id~tegrymlSGgadgsi~v~Dl~n~t~~e-~s~li~k~~c~v~~~h-~~~H-ky~iss~~WyP~D----- 113 (397)
T KOG4283|consen 44 GSVNSL--QIDLTEGRYMLSGGADGSIAVFDLQNATDYE-ASGLIAKHKCIVAKQH-ENGH-KYAISSAIWYPID----- 113 (397)
T ss_pred Ccccee--eeccccceEEeecCCCccEEEEEeccccchh-hccceeheeeeccccC-Cccc-eeeeeeeEEeeec-----
Confidence 567555 6666 58999999999999999998654110 0000000000000000 1244 3578889999998
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC---CCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
..++.+++.|.++++||..+-+....+. ..+.|.+-+++|- ..++++|..+-.|++.|+.+|.+.+++.+|.
T Consensus 114 ---tGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 114 ---TGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred ---CceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 7889999999999999999988876663 5678999999883 3357788888999999999999999999999
Q ss_pred CCeEEEEEccCCCEEE-EeC--CeEEEEECCCC-ceeeE--------------eecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 160 KGISCMAVSSDGKMLA-TAA--GQLKTFNCSDH-KKMQK--------------FSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~-~~~--g~i~lwd~~~~-~~~~~--------------~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
..|.++.|+|...+++ +|+ |.|++||++.. .+... -..|.+.+.+++|+.++.++++++ .|
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g-td 267 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG-TD 267 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc-Cc
Confidence 9999999999887755 455 89999999754 22222 245778899999999999999999 58
Q ss_pred CeEEEEEcCCCccccc----eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEe
Q 006808 222 RYIALWRTDGVKKQSA----SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (630)
..+++|+..++..... .+.....+....+.+. +...++---.++.+.++++-.+..++-.+.....+
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~---------~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i 338 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSM---------DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRI 338 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEEEeec---------ccceEEEEecCCeEEEEEccCceEEEeeeccccee
Confidence 8999999988764210 0111111112222211 12222222334666666666665555433332222
Q ss_pred eccCCCcccccchhhhhhhccccccccC
Q 006808 298 SSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
.|. .+.++.+ ..+++..++.+..
T Consensus 339 ~c~-~~~~~fq----~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 339 NCA-AYRPDFE----QCFTGDMNGNIYM 361 (397)
T ss_pred eEE-eecCchh----hhhccccCCcccc
Confidence 221 1455544 6778888765444
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=5.1e-17 Score=156.24 Aligned_cols=187 Identities=16% Similarity=0.229 Sum_probs=151.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-CeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISC 164 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~ 164 (630)
..++++|+.++.|+|||++ .+.+.+++.+|...|+++.++....+|++++..|.|.+..+.++....+|....+ .|.-
T Consensus 91 S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred ceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 4578899999999999999 4455577789999999999999999999999999999999999988888886644 5668
Q ss_pred EEEccCCCEEEE-eC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcE-EEEEeeCCCeEEEEEcCCCcccccee
Q 006808 165 MAVSSDGKMLAT-AA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKY-VLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 165 l~~~p~~~~l~~-~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~-l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+.|+|..+++++ ++ |.|.+||+....++..+ ..|..|...|+|+|.+.. |++.| .|+.|.+||+...... .
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~yD~~s~~s~---~ 245 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINIYDIRSQAST---D 245 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEEEeeccccccc---c
Confidence 999998776554 44 99999999887776665 579999999999997765 55555 7999999999876533 2
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+...++ ...++|. ++|.+|++|+..|.|..||++..+
T Consensus 246 ~l~y~~P---lstvaf~-----~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 246 RLTYSHP---LSTVAFS-----ECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eeeecCC---cceeeec-----CCceEEEeecCCceEEEEecccCC
Confidence 2333343 3455665 999999999999999999987553
No 163
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.8e-15 Score=141.07 Aligned_cols=234 Identities=14% Similarity=0.161 Sum_probs=172.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
....|+.++..|..|+.|| .++|+............. +..+.-+.|. ..+
T Consensus 9 ~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~------------------~~~IvEmLFS-----------SSL 58 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTE------------------GVSIVEMLFS-----------SSL 58 (391)
T ss_pred eeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCC------------------CeEEEEeecc-----------cce
Confidence 4457999999999999987 488887654331111100 1111111121 445
Q ss_pred EEEEeCCC--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC---CCCeE
Q 006808 89 LVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGIS 163 (630)
Q Consensus 89 l~~~~~~g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~ 163 (630)
+++.+.+. .+++++...+..+..+. ...+|.++.++.+ .|+++=.+ .|+|||+++.+.++++... ...+.
T Consensus 59 vaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 59 VAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred eEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence 66666543 38999999988887775 4567999999753 56666444 4999999999998887643 34677
Q ss_pred EEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 164 CMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
++.+++.+.+++.-+ |.|.+||..+-+.+..+..|.+++.+++|+++|.+|++++.....|||+.+.++++. .
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl---~ 210 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL---Y 210 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe---e
Confidence 777777778998755 899999999999999999999999999999999999999843335899999998754 3
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+..+.....+..++|+ |++.+|++.+..++|+||.+....
T Consensus 211 eFRRG~~~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeCCceeeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecccc
Confidence 44444445556667776 999999999999999999986554
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.8e-17 Score=149.35 Aligned_cols=278 Identities=12% Similarity=0.144 Sum_probs=184.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeEE--eecCC-C
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST-K 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~-~ 160 (630)
.+.++++..+|.|++||..+++.+..+ .+|...+..+.|.. .+..+++|+.||+|++||+++...... +..+. .
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 467899999999999999998887555 57888899999976 456699999999999999998754443 44444 4
Q ss_pred CeEEEEEccCCCEEEEeC------CeEEEEECCCCce-eeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 GISCMAVSSDGKMLATAA------GQLKTFNCSDHKK-MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~~-~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+..|++.+-.+.++++|. -.+.+||++..+. ++.+ ..|...|+++.|+|...-++.+|+-||.+.+||+...
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 777888777788888886 3899999998876 5544 5799999999999977655555557999999999876
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEe-------eccC---C
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-------SSED---V 302 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~---~ 302 (630)
... -.....+.+...+-.+-|.+ +.-+.|.+.+..+...+|++..+............. .+.. .
T Consensus 199 ~Ee-DaL~~viN~~sSI~~igw~~-----~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~ 272 (376)
T KOG1188|consen 199 NEE-DALLHVINHGSSIHLIGWLS-----KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE 272 (376)
T ss_pred cch-hhHHHhhcccceeeeeeeec-----CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence 422 11223344444454444544 333568888999999999998886433322221110 0000 0
Q ss_pred Ccccccchhhhhhhccc-cccccCCceeEEE-EE---cCccCceeeEEec-cCCCcEEEeecCCcceeeccccceecccc
Q 006808 303 NSKSQKSATAAIFAAKL-QDIVKPASVHTFV-AY---GLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~-~~---g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~ 376 (630)
.+|... ...+.+.. .+ .+.++. .+ ++... ....+.+ |..-|.++.|...+.++ .||++|+.+.+
T Consensus 273 ~~~~~~---~~~~l~g~~~n-----~~~~~~~~~~~s~~~~~-~~a~l~g~~~eiVR~i~~~~~~~~l-~TGGEDG~l~~ 342 (376)
T KOG1188|consen 273 HSPGDK---DTCALAGTDSN-----KGTIFPLVDTSSGSLLT-EPAILQGGHEEIVRDILFDVKNDVL-YTGGEDGLLQA 342 (376)
T ss_pred ccCCCc---ceEEEeccccC-----ceeEEEeeecccccccC-ccccccCCcHHHHHHHhhhccccee-eccCCCceEEE
Confidence 111111 01111111 11 112221 11 11111 1222334 56668888888888888 99999999999
Q ss_pred ceec
Q 006808 377 RYVQ 380 (630)
Q Consensus 377 w~~~ 380 (630)
|..+
T Consensus 343 Wk~~ 346 (376)
T KOG1188|consen 343 WKVE 346 (376)
T ss_pred EecC
Confidence 9864
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=143.32 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=176.0
Q ss_pred CcEEEEEeCC-------CeEEEEEccCCe---------eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 006808 86 SSLLVLGTGG-------GDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 86 ~~~l~~~~~~-------g~v~iwd~~~~~---------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
..+|+++..+ ..+-||.+.... ++..+...+-+.|.|+.|.|++..+++-. |..|.+|++..+
T Consensus 76 ~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~es 154 (370)
T KOG1007|consen 76 QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDES 154 (370)
T ss_pred CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccC
Confidence 4556665542 126799886432 23334335667999999999999988875 788999999877
Q ss_pred ce-eEEeec-----CCCCeEEEEEcc--CCCEEEEeC-CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEee
Q 006808 150 SL-LGKFRA-----STKGISCMAVSS--DGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 150 ~~-~~~~~~-----~~~~v~~l~~~p--~~~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
.. +..+.. +....++-+|+| +|+.+++.+ +++..||+++.+....+ ..|...|..+.|+|+-+++++++.
T Consensus 155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g 234 (370)
T KOG1007|consen 155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG 234 (370)
T ss_pred cchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC
Confidence 55 333322 344677889998 888999888 89999999987765555 578889999999999887766666
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeec
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (630)
+||.|++||.+..+.. ++.+..+...+.++-|++ ....+|++|+.|..|.+|...+...-... ....
T Consensus 235 DdgyvriWD~R~tk~p----v~el~~HsHWvW~VRfn~----~hdqLiLs~~SDs~V~Lsca~svSSE~qi-----~~~~ 301 (370)
T KOG1007|consen 235 DDGYVRIWDTRKTKFP----VQELPGHSHWVWAVRFNP----EHDQLILSGGSDSAVNLSCASSVSSEQQI-----EFED 301 (370)
T ss_pred CCccEEEEeccCCCcc----ccccCCCceEEEEEEecC----ccceEEEecCCCceeEEEecccccccccc-----cccc
Confidence 8999999999987644 455555555444454541 34688999999999999986443211100 0000
Q ss_pred cCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
...-.++.. +.. ..+ ......++++..|...|++++||.-...+.+|-|.||.+.+-++
T Consensus 302 dese~e~~d---------see-r~k-----------pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 302 DESESEDED---------SEE-RVK-----------PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccCcchh---------hHH-hcc-----------cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 000000000 000 000 11223456777999999999999999988789999999887655
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=5.7e-17 Score=151.08 Aligned_cols=206 Identities=14% Similarity=0.101 Sum_probs=155.3
Q ss_pred CCCCCEEEEEEecCCC--EEEEEeCCCcEEEEeCCC----------------CceeEEeecCCCCeEEEEEccCC-CEEE
Q 006808 115 CHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLT----------------GSLLGKFRASTKGISCMAVSSDG-KMLA 175 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~l~~~p~~-~~l~ 175 (630)
+|.+.++.+.-++-|+ +.++-+..|.|++||+.. .+++.++.+|...=+.++|+|-. ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 5777788777777554 455567899999999852 35788889999888999999932 2466
Q ss_pred EeC--CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceee
Q 006808 176 TAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (630)
Q Consensus 176 ~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (630)
+|. +.|++|...+|.- ...|.+|+..|-.++|||....++++|+-|++|+|||++.+... .|+..-.|.. -+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--~~~~~kAh~s-DV 305 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--AAVSTKAHNS-DV 305 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--ceeEeeccCC-ce
Confidence 766 8999999988753 23467899999999999987766666667999999999998644 2555544555 56
Q ss_pred eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeE
Q 006808 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 330 (630)
.++.|+ ..-.+|++|+.||+++|||+++.+. .
T Consensus 306 NVISWn-----r~~~lLasG~DdGt~~iwDLR~~~~------~------------------------------------- 337 (440)
T KOG0302|consen 306 NVISWN-----RREPLLASGGDDGTLSIWDLRQFKS------G------------------------------------- 337 (440)
T ss_pred eeEEcc-----CCcceeeecCCCceEEEEEhhhccC------C-------------------------------------
Confidence 667676 5556999999999999999854432 0
Q ss_pred EEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
..+..++.|..+|+++.|+|...-..+.++.|..+.+|++.
T Consensus 338 ---------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 338 ---------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ---------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 11225568999999999999755333667779999999983
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=6.4e-17 Score=160.68 Aligned_cols=260 Identities=11% Similarity=0.093 Sum_probs=179.1
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 175 (630)
..+.+||+..|..+.++ ++|...|.+++|+.+|+.|++|+.|..|.+|.-+-. -+-.+ .|...|.|+.|+|-...|+
T Consensus 33 ~rlliyD~ndG~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkY-SH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKY-SHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred CEEEEEeCCCccccccc-ccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeee-ccCCeeeEeecCchHHHhh
Confidence 34667777766666444 589999999999999999999999999999985421 12222 3888999999999999999
Q ss_pred EeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEE
Q 006808 176 TAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254 (630)
Q Consensus 176 ~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (630)
+++ ...-+|........ ..+ ....+.+++|..||++|+.+- .+|+|.+-+-...... .+...+.+...+..++
T Consensus 110 sCsLsdFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~-~nGTIsiRNk~gEek~---~I~Rpgg~Nspiwsi~ 183 (1081)
T KOG1538|consen 110 SCSLSDFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGM-FNGTISIRNKNGEEKV---KIERPGGSNSPIWSIC 183 (1081)
T ss_pred hcchhhccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEec-cCceEEeecCCCCcce---EEeCCCCCCCCceEEE
Confidence 999 88889987554332 221 245788999999999999876 6999998865443322 3444344555555555
Q ss_pred ecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEE
Q 006808 255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY 334 (630)
Q Consensus 255 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 334 (630)
|++..--.....+++.....++.+|.+ +|+.+...+.......|.. +-+.+. +++.|+.++...++. -.
T Consensus 184 ~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~Cis-Yf~NGE----y~LiGGsdk~L~~fT-----R~ 252 (1081)
T KOG1538|consen 184 WNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCIS-YFTNGE----YILLGGSDKQLSLFT-----RD 252 (1081)
T ss_pred ecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhhe-eccCCc----EEEEccCCCceEEEe-----ec
Confidence 552211112356788888889998876 5655554333333333322 455666 899999887544432 22
Q ss_pred cCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 335 GLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 335 g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|. .+.++......|+.++..|++++. +.|..||++..+++.
T Consensus 253 Gv----rLGTvg~~D~WIWtV~~~PNsQ~v-~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 253 GV----RLGTVGEQDSWIWTVQAKPNSQYV-VVGCQDGTIACYNLI 293 (1081)
T ss_pred Ce----EEeeccccceeEEEEEEccCCceE-EEEEccCeeehhhhH
Confidence 22 222333455679999999999999 889999999888764
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=2.9e-16 Score=147.17 Aligned_cols=207 Identities=16% Similarity=0.226 Sum_probs=161.4
Q ss_pred cccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeee------EEccCCCCCCEEEEEEecCC-CEE
Q 006808 60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFATHG-SCI 132 (630)
Q Consensus 60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~------~~~~~~h~~~v~~~~~s~~g-~~l 132 (630)
.+||.. .+..+.|+|++ ...|++|+.|.+|.||++..+... ...+.+|...|--+.|+|.. +.|
T Consensus 77 v~GHt~-~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 77 VCGHTA-PVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred ccCccc-cccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 457754 67789999997 788999999999999999765432 23346899999999999954 568
Q ss_pred EEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCC-CeEEEEEee
Q 006808 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSD 209 (630)
Q Consensus 133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp 209 (630)
++++.|.+|.+|++.+|+.+-++. |..-|+++.|+.+|.++++++ ..|+|||.++++.+..-.+|.+ .-..+.|-.
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999999988888 999999999999999999998 7999999999999988888875 355677888
Q ss_pred CCcEEEEEee---CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcc
Q 006808 210 NGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE 285 (630)
Q Consensus 210 ~~~~l~~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~ 285 (630)
+|. ++++|. .++.+-+||...-... .....+...+. +-.-++. +|...|..++ .|+.|+.|.+.+-.
T Consensus 227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elDtSnG-vl~PFyD-----~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 227 SGK-IFTTGFSRMSERQIALWDPNNLEEP--IALQELDTSNG-VLLPFYD-----PDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCc-eeeeccccccccceeccCcccccCc--ceeEEeccCCc-eEEeeec-----CCCCEEEEEecCCcceEEEEecCCC
Confidence 888 566552 3678999998775533 12333333332 2333443 7878776655 49999999986554
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=3.4e-16 Score=141.03 Aligned_cols=242 Identities=14% Similarity=0.198 Sum_probs=170.1
Q ss_pred cccceeEeEECCCC-----CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 4 SNIRDILTSFSPAL-----DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 4 ~~V~~~~~~fs~dg-----~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
-|++.+ .|.|+. ++||+++ ..+|+|.+.......... ..++.. ...+.....|.+.|+..+
T Consensus 97 YP~tK~--~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~--------~~L~~~-kns~~~aPlTSFDWne~d- 162 (364)
T KOG0290|consen 97 YPVTKL--MWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ--------SVLNNN-KNSEFCAPLTSFDWNEVD- 162 (364)
T ss_pred CCccce--EecCCccccCcchhhccc--CeEEEEeccCcCCceehh--------hhhccC-cccccCCcccccccccCC-
Confidence 367455 899976 4777776 479999987322111111 011111 124446688999999988
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
.++|.+++-|-+..|||+.++.. +.+.+.+|...|.+++|...+. .|+++|.||.|++||++...-...+
T Consensus 163 -------p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 163 -------PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred -------cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 56899999999999999999743 4455568999999999998553 5899999999999999876433222
Q ss_pred -ec--CCCCeEEEEEcc-CCCEEEEeC---CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEE
Q 006808 156 -RA--STKGISCMAVSS-DGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIAL 226 (630)
Q Consensus 156 -~~--~~~~v~~l~~~p-~~~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~v 226 (630)
.. ...+...++|++ |-+++|+-. ..|.+.|++.. .++..+.+|.+.|++++|.|.. ..++++| +|...-+
T Consensus 236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qali 314 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALI 314 (364)
T ss_pred ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEE
Confidence 22 245888999998 455666644 78999999875 4788899999999999999965 4666666 7999999
Q ss_pred EEcCCCcc-ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 227 WRTDGVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 227 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
||+...-. .....++.......+....|.+ ..+.+|+.+..
T Consensus 315 WDl~q~~~~~~~dPilay~a~~EVNqi~Ws~-----~~~Dwiai~~~ 356 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYTAGGEVNQIQWSS-----SQPDWIAICFG 356 (364)
T ss_pred EecccccccCCCCchhhhhccceeeeeeecc-----cCCCEEEEEec
Confidence 99987543 1122233333445555555554 45677777655
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=9.5e-16 Score=158.15 Aligned_cols=250 Identities=12% Similarity=0.130 Sum_probs=177.5
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEE--EEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| +|++|+| +..++|.|+.+|.|.+||+..+... ..+..+ .......++.+.|.....
T Consensus 242 ~s~v--~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~--------------~~sh~~~v~~vvW~~~~~- 304 (555)
T KOG1587|consen 242 PSEV--TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL--------------EVSHSEPVTAVVWLQNEH- 304 (555)
T ss_pred CCce--eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc--------------cccCCcCeEEEEEeccCC-
Confidence 4567 7779999 5578888889999999999877652 211111 122245777888876432
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEc-----cC------CCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-----SD------CHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~-----~~------~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~ 147 (630)
+.-+++++.||.|+.|+++.-...... .. .-...+++++|.+ +-..|+.|+..|.|.--+-.
T Consensus 305 ------~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 305 ------NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ------CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 345888999999999988643321100 00 1224689999988 45569999999988774432
Q ss_pred CC--------ceeEEeecCCCCeEEEEEccCCC-EEEEeC-CeEEEEECC-CCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 148 TG--------SLLGKFRASTKGISCMAVSSDGK-MLATAA-GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 148 ~~--------~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~-g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
.. +....+..|.++|+++.++|-+. .+++++ .+++||... ...++..+..+...+++++|||....+++
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 21 22335667888999999999654 444444 799999987 66677777778888999999998877766
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
+...||.|.+||+...... .+..............++ +.|..|++|...|.+++|++..
T Consensus 459 ~~d~~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWS-----PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccC---CcccccccccccceeecC-----CCCcEEEEecCCCcEEEEEcCc
Confidence 6667999999999876644 222222225556666665 7899999999999999999853
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=144.56 Aligned_cols=189 Identities=13% Similarity=0.208 Sum_probs=143.2
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (630)
+.+|++...|.|++||..+|+.+..|+++....+.+.|... +. ...+.+|+.||.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~------------------ds-------~h~v~s~ssDG~ 95 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISC------------------DS-------PHGVISCSSDGT 95 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecC------------------CC-------CCeeEEeccCCe
Confidence 46888888999999999999999999988777665555432 10 567899999999
Q ss_pred EEEEEccCCeeeEEcc-CCCC-CCEEEEEEecCCCEEEEEe----CCCcEEEEeCCCCce-eEE-eecCCCCeEEEEEcc
Q 006808 98 VLALAVSAGQLKWRLS-DCHP-GGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSL-LGK-FRASTKGISCMAVSS 169 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~-~~h~-~~v~~~~~s~~g~~l~s~~----~dg~v~iwd~~~~~~-~~~-~~~~~~~v~~l~~~p 169 (630)
|++||++......++. .+|+ .+..+++.+..++.+++|. .+-.|.+||++..+. ++. +..|...|++++|+|
T Consensus 96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 9999999876544433 3344 4667777777777777775 466899999998766 554 456888999999999
Q ss_pred -CCCEEEEeC--CeEEEEECCCCc----eeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCc
Q 006808 170 -DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 170 -~~~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+..+|++|+ |-|.+||+.... ++.++ .|...|.++.|..++ +.+.+-+ ......+|++..+.
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGS 245 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCC
Confidence 567888998 999999987542 23333 367779999998877 3344444 57889999987654
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.7e-16 Score=153.82 Aligned_cols=243 Identities=15% Similarity=0.086 Sum_probs=178.3
Q ss_pred EccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCC--EEEEeC-CeEEEEECC
Q 006808 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK--MLATAA-GQLKTFNCS 187 (630)
Q Consensus 111 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~~~~-g~i~lwd~~ 187 (630)
.++.+|++.|.++...|.|.+|++|+.||+|++|.+.+|+|++++. ..+.|.|++|+|.+. .||++. +.+.+.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 4457999999999999999999999999999999999999999988 456899999999654 444444 334443321
Q ss_pred CC-------------------------------------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeC--CCeEEEEE
Q 006808 188 DH-------------------------------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWR 228 (630)
Q Consensus 188 ~~-------------------------------------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~--d~~i~vwd 228 (630)
-| .-++..-.|...|+.+.|+..|.||++.... ...|.|.+
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 11 0012333477889999999999999997632 24788999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccccc
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (630)
+.....+ + .+......+..+.|. |...+|++++. ..|+|||+.....++...+...-+.+ +...+.+.
T Consensus 553 LSK~~sQ---~--PF~kskG~vq~v~FH-----Ps~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~-msihp~GD 620 (733)
T KOG0650|consen 553 LSKRKSQ---S--PFRKSKGLVQRVKFH-----PSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISS-MSIHPNGD 620 (733)
T ss_pred ccccccc---C--chhhcCCceeEEEec-----CCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeee-eeecCCCC
Confidence 8877643 2 232333445556666 88888888887 68999999887776665554433332 22455555
Q ss_pred chhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 309 ~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.|+.++. +.+++..+-......++++..|...+.+++|++.=.++ +|||.|+++.+..
T Consensus 621 ----nli~gs~-------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf-as~sdDgtv~Vfh 678 (733)
T KOG0650|consen 621 ----NLILGSY-------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF-ASGSDDGTVIVFH 678 (733)
T ss_pred ----eEEEecC-------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee-eeecCCCcEEEEe
Confidence 6777776 44555555556667788999999999999999998888 9999999998764
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=3.7e-14 Score=148.31 Aligned_cols=322 Identities=20% Similarity=0.287 Sum_probs=214.2
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEecccccccccccccccccccccccceeeEEe-cccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-LSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w-~~~~~~~~ 81 (630)
..| .++.|.+.+..++.++.|+.+.+|+...+. ....+..... ..+..+.+ .+.
T Consensus 66 ~~i--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~----- 121 (466)
T COG2319 66 DSI--TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----------------SSVSKLALSSPD----- 121 (466)
T ss_pred ceE--EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----------------CceeeEEEECCC-----
Confidence 456 556999999999999999999999998876 5555543221 11222222 111
Q ss_pred cccCCc-EEEEEeC-CCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeec
Q 006808 82 RKLGSS-LLVLGTG-GGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 82 ~~~~~~-~l~~~~~-~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~~~~~~~~~ 157 (630)
.. .++..+. ++.+.+|+... ......+ ..|...|.+++|+|++..+++++. |+.+++|++..+..+..+..
T Consensus 122 ----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 122 ----GNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred ----cceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 22 3444344 88999999998 4444333 479999999999999998888885 99999999999889999999
Q ss_pred CCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|...|.+++|+|++. .+++++ +.|++||...+..+. .+.+|.... -..|+|++.++++++ .|+.+++|++....
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCC
Confidence 999999999999998 555534 899999998888777 688888775 448999997777666 79999999998766
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC--ceeEEeeccCCCcccccchh
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (630)
.. .... ..| ...+....+. |++..+++++.|+.+.+|+..+........ .....+.... +.+...
T Consensus 275 ~~--~~~~-~~~-~~~v~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 341 (466)
T COG2319 275 SL--LRTL-SGH-SSSVLSVAFS-----PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGS--- 341 (466)
T ss_pred cE--EEEE-ecC-CccEEEEEEC-----CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE-ECCCCC---
Confidence 41 1122 234 4444455665 778888889889999999887765443332 1111111111 111101
Q ss_pred hhhhhc-cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeecc-ccceeccccceecc
Q 006808 312 AAIFAA-KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS-QSLLKSKRGRYVQN 381 (630)
Q Consensus 312 ~~i~~~-~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s-~s~d~~~~~w~~~~ 381 (630)
.+..+ ..++ .+.. +.......+.....+. .+..+.+++ .... .+ ++.++.+++|+...
T Consensus 342 -~~~~~~~~d~-------~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 401 (466)
T COG2319 342 -LLVSGGSDDG-------TIRL-WDLRTGKPLKTLEGHS-NVLSVSFSP-DGRV-VSSGSTDGTVRLWDLST 401 (466)
T ss_pred -EEEEeecCCC-------cEEe-eecCCCceeEEecCCc-eEEEEEECC-CCCE-EEEecCCCceEEEeccc
Confidence 23333 2322 2222 2211111122221222 278888888 5333 44 67889999998753
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=3.3e-14 Score=148.69 Aligned_cols=319 Identities=21% Similarity=0.322 Sum_probs=213.9
Q ss_pred ccceeEeEECCCCC-EEEEeeC-CCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 5 NIRDILTSFSPALD-YFAICSG-DARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 5 ~V~~~~~~fs~dg~-~las~s~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+..+... ++++. +++.++. |+.+.+|+... ......+..|...+..+.|++.
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 166 (466)
T COG2319 111 SVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD----------------------- 166 (466)
T ss_pred ceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-----------------------
Confidence 45445444 88888 5555455 99999999987 6777777766655554444443
Q ss_pred cccCCcEEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeE-EeecC
Q 006808 82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLG-KFRAS 158 (630)
Q Consensus 82 ~~~~~~~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~-~~~~~ 158 (630)
+..+++++. ++.+++|++..+..+..+ .+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|
T Consensus 167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~ 241 (466)
T COG2319 167 ----GKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241 (466)
T ss_pred ----CCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence 456777775 999999999987776555 45999999999999998 55555899999999998888887 68877
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce-eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.... ...|+|++.++++++ +.+++|++..... +..+.+|...+.++.|+|++..+++++ .|+.+.+|+.......
T Consensus 242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLETGKLL 319 (466)
T ss_pred Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CCCcEEEEEcCCCceE
Confidence 7765 448999997877766 8999999987664 444567889999999999888888866 5788999988876543
Q ss_pred cceeeee-ecCCceeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCCcccccccCcee--EEeeccCCCcccccchh
Q 006808 236 SASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATK--ILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 311 (630)
.... ..+...+....+ . +++..++.+ ..|+.+.+|+.............. ..+. +.+ ..
T Consensus 320 ---~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~--- 382 (466)
T COG2319 320 ---SSLTLKGHEGPVSSLSF-S-----PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS----FSP-DG--- 382 (466)
T ss_pred ---EEeeecccCCceEEEEE-C-----CCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEE----ECC-CC---
Confidence 1111 234332333333 4 444555555 678999999987776222211111 1111 111 11
Q ss_pred hhhhh-ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 312 AAIFA-AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 312 ~~i~~-~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.+.. +..++.+..++ ............+...+....+++++.++ ++++.+..++.|+...
T Consensus 383 -~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 383 -RVVSSGSTDGTVRLWD--------LSTGSLLRNLDGHTSRVTSLDFSPDGKSL-ASGSSDNTIRLWDLKT 443 (466)
T ss_pred -CEEEEecCCCceEEEe--------cccCeeeeeccCCCCcEEEEEECCCCcEE-EEecCCCcEEEEeccC
Confidence 1221 23333222221 11111111121222688999999999998 7788899999998753
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6.1e-15 Score=129.71 Aligned_cols=226 Identities=13% Similarity=0.218 Sum_probs=157.5
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCc----------EEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
+.-+++|.+++|+.|+.+|+|.++.+.+-. .+-.+++|.+++. .+++.
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy------------------~~~f~---- 71 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIY------------------YLAFH---- 71 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCee------------------eeeee----
Confidence 344899999999999999999999876421 1122233333332 33332
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCee------eEEcc-CCCC-----CCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLS-DCHP-----GGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~------~~~~~-~~h~-----~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.. ++..++||.|+-|..+.-.. .+... ..|. ..|+++-..|..+.++.++.|+.++.||+
T Consensus 72 -------d~-~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 72 -------DD-FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL 143 (325)
T ss_pred -------hh-heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence 12 34555669999887653211 11111 1122 35899999998888888889999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec---------C-CCCeEEEEEeeCCcEE
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---------H-PGAVRFMTFSDNGKYV 214 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~---------h-~~~v~~l~~sp~~~~l 214 (630)
++|+..+++++|...|.++.-......+++|+ |++++||.++++.+..+.. | ...|.+++- +..++
T Consensus 144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWl 221 (325)
T KOG0649|consen 144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWL 221 (325)
T ss_pred cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceE
Confidence 99999999999999999999866666788887 9999999999998877632 1 224555554 45677
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
+.++ ...+.+|+++..+.. +++.+..+...+ . | ....+++++..+.+.-|.+
T Consensus 222 vCGg--Gp~lslwhLrsse~t---~vfpipa~v~~v--~-F-------~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 222 VCGG--GPKLSLWHLRSSEST---CVFPIPARVHLV--D-F-------VDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EecC--CCceeEEeccCCCce---EEEecccceeEe--e-e-------ecceEEEeccccceeeeee
Confidence 6654 668999999998744 666665544332 2 2 2467888888778888876
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=2e-14 Score=145.11 Aligned_cols=186 Identities=17% Similarity=0.245 Sum_probs=123.2
Q ss_pred CcEEEEEe-CCCeEEEEEcc-CCee--eEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCC-Cc---eeEEee
Q 006808 86 SSLLVLGT-GGGDVLALAVS-AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLT-GS---LLGKFR 156 (630)
Q Consensus 86 ~~~l~~~~-~~g~v~iwd~~-~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~-~~---~~~~~~ 156 (630)
+++|++++ .++.|.+|++. ++.. .... ...+....++|+|+|+++++++. ++.|.+|++.+ +. .+..+.
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence 66676665 46779999997 3332 2222 23345678999999999888764 88999999864 32 223332
Q ss_pred cCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceee-------EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~-------~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
+.....+++++|+++++++++ +.|.+||+.+...+. ... .......+.|+|+|++++++...++.|.+
T Consensus 124 -~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v 201 (330)
T PRK11028 124 -GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDV 201 (330)
T ss_pred -CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEE
Confidence 223467889999999987766 799999997633221 111 12345789999999999888756899999
Q ss_pred EEcCCC--ccccceeeeeec---C---CceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCC
Q 006808 227 WRTDGV--KKQSASCVLAME---H---PAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (630)
Q Consensus 227 wd~~~~--~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~ 283 (630)
|++... ... .+.... . .......+.++ |++++++++.. ++.|.+|++..
T Consensus 202 ~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~i~~~-----pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 202 WQLKDPHGEIE---CVQTLDMMPADFSDTRWAADIHIT-----PDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEeCCCCCEE---EEEEEecCCCcCCCCccceeEEEC-----CCCCEEEEecCCCCeEEEEEEeC
Confidence 999742 211 111111 1 01111224455 99999999865 78999999854
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=8.7e-17 Score=157.55 Aligned_cols=254 Identities=16% Similarity=0.172 Sum_probs=171.8
Q ss_pred CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC--------CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEE
Q 006808 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKT 183 (630)
Q Consensus 114 ~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~l 183 (630)
..|...|+.+.|+|....|++|+.||++++|+++. -+++.+|++|.++|.|+++.+++..+++|+ |+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 45888999999999999999999999999999932 257889999999999999999999999999 99999
Q ss_pred EECCCC----------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeE
Q 006808 184 FNCSDH----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 184 wd~~~~----------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (630)
|++... .....+.||...|+.+++|+...+|++++ .||+++.|......+ |++..........++
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-SDGTVRLWEPTEESP----CTFGEPKEHGYPLSV 445 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec-CCceEEeeccCCcCc----cccCCccccCCcceE
Confidence 966421 12346789999999999999988898888 599999999877654 333332222222233
Q ss_pred EecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee---EEeeccCCCcccccchhhhhhhccccccccCCceeE
Q 006808 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK---ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 330 (630)
.+.. ..-.+.++...-|.-.+++...+..+....... ........+.- ++...+..+++..++.++.++
T Consensus 446 d~~s----s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV-s~~~~~~~~~~hed~~Ir~~d--- 517 (577)
T KOG0642|consen 446 DRTS----SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV-SHPTADITFTAHEDRSIRFFD--- 517 (577)
T ss_pred eecc----chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE-ecCCCCeeEecccCCceeccc---
Confidence 3320 111233333333444444544444333222111 00000000000 001113567777777776654
Q ss_pred EEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccceeec
Q 006808 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTAL 386 (630)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~ 386 (630)
+.....+..+..|...+.++++-|+|.+| ++|++|+++++|.+..+.-++
T Consensus 518 -----n~~~~~l~s~~a~~~svtslai~~ng~~l-~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 518 -----NKTGKILHSMVAHKDSVTSLAIDPNGPYL-MSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred -----ccccccchheeeccceecceeecCCCceE-EeecCCceeehhhccchheee
Confidence 33344444566899999999999999999 999999999999986544333
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.8e-16 Score=154.05 Aligned_cols=242 Identities=14% Similarity=0.141 Sum_probs=174.0
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCC--------CcEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK--------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.||++ +|.|....|++|+.||+|++|+++. -+.+.+|.+|.+++.++++...
T Consensus 296 ~ir~l--~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n------------------ 355 (577)
T KOG0642|consen 296 CIRAL--AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN------------------ 355 (577)
T ss_pred hhhhh--hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC------------------
Confidence 46666 8999999999999999999999932 2457788888777776666555
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCC---------eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~---------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+..+++|+.||+|+.|++..+ ..+...+.||...|+.+++|+....|++|+.||+++.|+..
T Consensus 356 ---------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 356 ---------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ---------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 778999999999999966422 12334456999999999999988899999999999999987
Q ss_pred CCceeEEeecCC--CCeEEEEEccCCCEEEEeCCeE---EEEECCCCceeeEeecC-------CCCeEEEEEeeCCcEEE
Q 006808 148 TGSLLGKFRAST--KGISCMAVSSDGKMLATAAGQL---KTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 148 ~~~~~~~~~~~~--~~v~~l~~~p~~~~l~~~~g~i---~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l~ 215 (630)
...+ .+|.... +...++.+......+..++... -+++......+..+... ...+..+.++|.+...+
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence 6555 4444322 2335566544332333333333 33444444444444321 13467788999998888
Q ss_pred EEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
++. .|+.|+++|..++... .....+...+++.++. |+|.+|++++.||.+++|.+......
T Consensus 506 ~~h-ed~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~-----~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 506 TAH-EDRSIRFFDNKTGKIL-----HSMVAHKDSVTSLAID-----PNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecc-cCCceecccccccccc-----hheeeccceecceeec-----CCCceEEeecCCceeehhhccchhee
Confidence 776 7999999999988743 3333445556677776 99999999999999999998655443
No 179
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=99.68 E-value=8.5e-17 Score=132.87 Aligned_cols=99 Identities=34% Similarity=0.469 Sum_probs=95.4
Q ss_pred ccccCChhHHHHHHhccChhhHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHHhcccccCC-CChhHHHHHHHHHHHHH
Q 006808 485 FETNIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQ-ESLTPMLSSLYKITVSR 562 (630)
Q Consensus 485 ~~~~~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~-~~~~~~~~~~~wl~~ll~~h~~~l~~~-~~l~~~l~~L~~~~~~~ 562 (630)
|++.+|.+.|++|+++||+.|+.+||++++.+++ +++.+.+++++|+++||..|+++|++. |++.+.|..|++.+++|
T Consensus 9 vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~ 88 (110)
T PF04003_consen 9 VLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRER 88 (110)
T ss_pred HHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999888 788999999999999999999999999 99999999999999999
Q ss_pred HHhhHhHHhcc-chHHHHHHHH
Q 006808 563 EAAFQSLLRLS-GRLQLTMAQI 583 (630)
Q Consensus 563 ~~~~~~l~~l~-g~l~~~~~~~ 583 (630)
.+.++++++++ |+|+++.+|+
T Consensus 89 ~~~l~~l~~~n~~~L~~l~~q~ 110 (110)
T PF04003_consen 89 LQNLSKLLDLNLGRLDYLLSQI 110 (110)
T ss_pred HHHHHHHHHHhHHHHHHHHHhC
Confidence 99999999999 9999999985
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=3.3e-16 Score=159.61 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=180.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+| .|+.|...|.++++|+.|..++||...++.++....||.+.++....+..
T Consensus 191 naV--yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------------------------- 243 (1113)
T KOG0644|consen 191 NAV--YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------------------------- 243 (1113)
T ss_pred hhe--eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-------------------------
Confidence 356 67799999999999999999999999999999999998887776555543
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-C-------------
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-G------------- 149 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~------------- 149 (630)
+.++++++.|..|++|.+..+..+ .++.+|++.|++++|+|-. +.+.||++++||.+- .
T Consensus 244 --n~~iaaaS~D~vIrvWrl~~~~pv-svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 244 --NTMIAAASNDKVIRVWRLPDGAPV-SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred --hhhhhhcccCceEEEEecCCCchH-HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccc
Confidence 667889999999999999999988 5556999999999999954 778999999999861 0
Q ss_pred ceeEEee----------------cCCCCeEEEEEccCCCEEEEeC-------------CeEEEEECCCCceeeEeecCCC
Q 006808 150 SLLGKFR----------------ASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPG 200 (630)
Q Consensus 150 ~~~~~~~----------------~~~~~v~~l~~~p~~~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~ 200 (630)
..+..+. ......-+++|....-.+++.+ ..+.+|++.+|.....+.+|..
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 0000000 0001122233333222222222 3577899999998888899999
Q ss_pred CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 201 AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 201 ~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
.+..+.++|-+..++.+...||...|||+..+.+. ..+..+ +...+.+ .| +++|..++....-|.++|+.
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~y~~g-h~kl~d~-kF-----Sqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KHYFIG-HGKLVDG-KF-----SQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---eeeecc-cceeecc-cc-----CCCCceEecCCCCCceEEec
Confidence 99999999987776665558999999999998765 344444 2333332 33 38999999988899999998
Q ss_pred cCCcccccccCc
Q 006808 281 GQNIEELRNTKA 292 (630)
Q Consensus 281 ~~~~~~~~~~~~ 292 (630)
...++.....+.
T Consensus 467 ~gqs~s~k~ak~ 478 (1113)
T KOG0644|consen 467 TGQSKSQKKAKY 478 (1113)
T ss_pred cCCCcccccccc
Confidence 766655544443
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=6.6e-15 Score=156.39 Aligned_cols=340 Identities=13% Similarity=0.090 Sum_probs=195.2
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccc-cccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
++.|..+ +.++ ++.+|++||.||+|+||++..-. ++. ..-..+.|++. +..+.++..+..
T Consensus 1048 s~~v~k~--a~s~~~~s~FvsgS~DGtVKvW~~~k~~------~~~~s~rS~ltys~~------~sr~~~vt~~~~---- 1109 (1431)
T KOG1240|consen 1048 SSAVIKL--AVSSEHTSLFVSGSDDGTVKVWNLRKLE------GEGGSARSELTYSPE------GSRVEKVTMCGN---- 1109 (1431)
T ss_pred cccccce--eecCCCCceEEEecCCceEEEeeehhhh------cCcceeeeeEEEecc------CCceEEEEeccC----
Confidence 4455333 5555 56999999999999999975321 111 11112333332 233444444433
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeee------EEccCCC-CCCE-EEEEEec-CCC-EEEEEeCCCcEEEEeCCCCc
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCH-PGGV-SAISFAT-HGS-CIYSAGADGMVCEIDPLTGS 150 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~------~~~~~~h-~~~v-~~~~~s~-~g~-~l~s~~~dg~v~iwd~~~~~ 150 (630)
++.+++++.||.|.+.++...... .+....+ .+.+ ..-+|.. .+. .++.+...+.|..||+++..
T Consensus 1110 -----~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1110 -----GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred -----CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 778999999999999998762211 1111122 2333 3334433 333 67788888999999998776
Q ss_pred eeEEee--cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeC---CcEEEEEee-CC
Q 006808 151 LLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDN---GKYVLSSAV-GE 221 (630)
Q Consensus 151 ~~~~~~--~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~---~~~l~~~~~-~d 221 (630)
....++ ...+.|++++.+|.+.++++|. |.+.+||++=+.++..+. ++..+++.+..+|- ....+++++ ..
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 555433 3456899999999999999998 999999999888777763 34568888877663 346666665 57
Q ss_pred CeEEEEEcCCCccccceeeeeec-----------C-----Cc-eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 222 RYIALWRTDGVKKQSASCVLAME-----------H-----PA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~-----------~-----~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+.|.+|++.++... .++-.. . +. ......++. ..+.++++|+.|+.|+.||....
T Consensus 1265 nevs~wn~~~g~~~---~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-----~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQ---TVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-----EKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CceeeeecccCcce---EEEEcCCCCcchhhhcccccCCCCCcccceeeecc-----cCCceeeecCCccceeeccCCCc
Confidence 78999999988543 111111 0 00 111122222 34678999999999999998665
Q ss_pred ccccccCceeEEeeccCCCcccccchhhhhhhcccc--ccccC----CceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ--DIVKP----ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d--~~~~~----~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
.... ......... ++.........++.++.- ..+.. ..-.............-..-..|...|.++++-
T Consensus 1337 ~~ss-~~~~~~s~~----~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~ 1411 (1431)
T KOG1240|consen 1337 EISS-YAVPGPSTS----YSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATL 1411 (1431)
T ss_pred cccc-ccccCcccc----ccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhh
Confidence 4431 111110000 000000000011111110 00000 000000000000011111223689999999988
Q ss_pred CCcceeeccccceeccccce
Q 006808 359 QDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~ 378 (630)
....-|.++++.||.+++|.
T Consensus 1412 ~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1412 KSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCccEEEEecCCCeeeecC
Confidence 76654449999999999994
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=8.3e-16 Score=152.06 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=168.4
Q ss_pred ECCCCCEEEE--eeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 13 FSPALDYFAI--CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 13 fs~dg~~las--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
|..+..++|. .+.-|.|.||++.....+- .+.. +. ......++.+.|.|++ ...|+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLP-----Dgv~------p~---l~Ngt~vtDl~WdPFD--------~~rLA 644 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLP-----DGVM------PG---LFNGTLVTDLHWDPFD--------DERLA 644 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCC-----cccc------cc---cccCceeeecccCCCC--------hHHee
Confidence 4455555553 3446899999986533221 0000 00 1224578999999998 55699
Q ss_pred EEeCCCeEEEEEccCCee------eEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 91 LGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~------~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+++.+|.|++|.+..+.. ....+.+|...|+++.|+| -...|++++.|.+|++||+.+++....+.+|.+.|.
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF 724 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence 999999999999976532 2234457999999999999 456799999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEeecCC-CCeEEEEEeeCCcEEEEEeeC---CCeEEEEEcCCCcccc
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHP-GAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVKKQS 236 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~-~~v~~l~~sp~~~~l~~~~~~---d~~i~vwd~~~~~~~~ 236 (630)
.++|+|+|+.+++.+ |+|++|..+++. .+..-++.. ..--.|.|.-+|+++++.|.+ .+.|.+|+..+-....
T Consensus 725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP 804 (1012)
T ss_pred EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc
Confidence 999999999999988 999999998765 344333322 234568899999999998842 2468888876643220
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcC
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~ 282 (630)
.....+...... -+-.+ .+|. ..+++|-.|..|++|.+-
T Consensus 805 -l~t~~lDvaps~-LvP~Y-----D~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 805 -LYTQVLDVAPSP-LVPHY-----DYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred -ceeeeecccCcc-ccccc-----cCCCceEEEecCCCceEEEEEec
Confidence 011122111111 11111 2444 456777779999999863
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.9e-14 Score=150.59 Aligned_cols=287 Identities=14% Similarity=0.155 Sum_probs=195.3
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.|+|=...++++...-.|+|||++.++++..|..+... ...++.+....... ..++++
T Consensus 1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---------------~t~Vs~l~liNe~D-------~aLlLt 1128 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---------------DTRVSDLELINEQD-------DALLLT 1128 (1387)
T ss_pred eecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---------------CCccceeeeecccc-------hhheee
Confidence 89998888999887779999999999998777643321 22444555544332 678999
Q ss_pred EeCCCeEEEEEccCC-----eeeEEc------cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-
Q 006808 92 GTGGGDVLALAVSAG-----QLKWRL------SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~-----~~~~~~------~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~- 159 (630)
|+.||.|+||+-... +.+... ..+-.+.-.-+.|.....+|+++|.-..|+|||...-+....+....
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 999999999975322 122111 11111222446777777778888888999999998877777665433
Q ss_pred CCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCc---eeeEeecCCCC--eEEEEEeeCCcE-EEEEeeCCCeEEEEEcC
Q 006808 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGA--VRFMTFSDNGKY-VLSSAVGERYIALWRTD 230 (630)
Q Consensus 160 ~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~---~~~~~~~h~~~--v~~l~~sp~~~~-l~~~~~~d~~i~vwd~~ 230 (630)
..|+++.-+- .|..+++|. |.|++||.+... .+...+.|... |..+.+.+.|-. |++++ .+|.|++||++
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLR 1287 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecc
Confidence 3666665443 468888876 999999987643 46667788876 999999987755 77776 69999999999
Q ss_pred CCccccceeeeeec-CC--ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccc
Q 006808 231 GVKKQSASCVLAME-HP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (630)
Q Consensus 231 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (630)
...... .+... +. +...+++... ++...+|+|+. +.|.||++ .|+++...+.... |.
T Consensus 1288 ~~~~e~---~~~iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~-------F~--- 1347 (1387)
T KOG1517|consen 1288 MSSKET---FLTIVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPG-------FM--- 1347 (1387)
T ss_pred cCcccc---cceeeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEec-ChhhhcccccCcc-------cc---
Confidence 853221 11111 11 2234555555 77888999988 99999997 4555444431100 00
Q ss_pred cchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+ ...+.+.|++|+|--.+| +.|+.|..+.++.-.
T Consensus 1348 ---------~-----------------------------q~~gs~scL~FHP~~~ll-AaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1348 ---------G-----------------------------QRIGSVSCLAFHPHRLLL-AAGSADSTVSIYSCE 1381 (1387)
T ss_pred ---------c-----------------------------CcCCCcceeeecchhHhh-hhccCCceEEEeecC
Confidence 0 122356899999999999 888999988877553
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=2.9e-15 Score=145.66 Aligned_cols=176 Identities=16% Similarity=0.307 Sum_probs=139.9
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+...+++++.||.+.+.+-. ++.. +...+|.+.|.+-.|+|+|.-|++++.||.|++|. ++|-...++.....+|+|
T Consensus 74 ~~d~~~i~s~DGkf~il~k~-~rVE-~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKS-ARVE-RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred CcceEEEEcCCceEEEeccc-chhh-hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 36789999999999887643 3332 33458999999999999999999999999999998 667665566656779999
Q ss_pred EEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 165 MAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 165 l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
++|.|+..-++.+. +.+.+=.+.....+-..+.|.+-|.++.|+|.+..++++| .|-..++||..... .+..
T Consensus 151 ~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~~------Lf~S 223 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGAN------LFTS 223 (737)
T ss_pred EEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCcc------cccC
Confidence 99999877666555 8888888877777778899999999999999999999988 79999999977653 4455
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEE
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~ 277 (630)
..+...++.+.|. |+ ..++.++. ..++
T Consensus 224 ~~~ey~ITSva~n-----pd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 224 AAEEYAITSVAFN-----PE-KDYLLWSY-NTAR 250 (737)
T ss_pred Chhccceeeeeec-----cc-cceeeeee-eeee
Confidence 5566777888887 87 55555554 3444
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=9.4e-15 Score=131.72 Aligned_cols=201 Identities=13% Similarity=0.206 Sum_probs=153.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcE-EEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
-|+.|.|++..+|+-. |..|.+|++..+.. +.++....+.. .....+.-+|.|.. ..
T Consensus 127 ~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-------------~~~~ftsg~WspHH--------dg 184 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-------------MRHSFTSGAWSPHH--------DG 184 (370)
T ss_pred eeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-------------ccceecccccCCCC--------cc
Confidence 5669999999999876 78999999988766 45444322211 12234556787754 22
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCC-CceeEEeecCCCCeEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLT-GSLLGKFRASTKGISCM 165 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l 165 (630)
.-+..+.++++..||+++......+..+|...|..+.|+|+.++ |++|+.||.|++||.+. ..++..+.+|...|.++
T Consensus 185 nqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 185 NQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred ceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 34566778999999999998888888899999999999998765 88999999999999985 46788899999999999
Q ss_pred EEccCCC-EEEEeC--CeEEEEECCCC-----------------------------ceeeEeecCCCCeEEEEEeeCCcE
Q 006808 166 AVSSDGK-MLATAA--GQLKTFNCSDH-----------------------------KKMQKFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 166 ~~~p~~~-~l~~~~--g~i~lwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~sp~~~~ 213 (630)
.|+|... ++++++ ..|.+|...+- ..+.++..|...|.+++||.-..+
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 9999654 445555 57777754210 123466779999999999998888
Q ss_pred EEEEeeCCCeEEEEEcCC
Q 006808 214 VLSSAVGERYIALWRTDG 231 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~ 231 (630)
++++-+.||.+.|=.+..
T Consensus 345 iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeccCceEEeecCCh
Confidence 887777899988866543
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.9e-15 Score=143.60 Aligned_cols=194 Identities=21% Similarity=0.179 Sum_probs=151.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++|+++|..+|+|+.||++|||++.+...+.....|...+.++.|+|+ +.+|
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---------------------------gk~l 201 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---------------------------GKFL 201 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---------------------------CcEE
Confidence 4599999999999999999999999888888888888888888888887 7889
Q ss_pred EEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCC---CE--EEEEeCCCcEEEEeCCCCce-----eEEeecC
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHG---SC--IYSAGADGMVCEIDPLTGSL-----LGKFRAS 158 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g---~~--l~s~~~dg~v~iwd~~~~~~-----~~~~~~~ 158 (630)
++-+.+ ..+||+..++..+.+.. ..-......+.|+.++ .+ ++....-+.|+.|++...+- .++....
T Consensus 202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence 999888 99999999996654443 2233456778888776 23 33334556677777643221 1111222
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
...|++++++++|++++.|+ |.|-+++..+-+.+..+ ..|...|+.+.|+|+.+++++.++ +..+.+..+.-.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs-~~~~~v~~l~vd 356 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS-DNEAAVTKLAVD 356 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc-CCceeEEEEeec
Confidence 34799999999999999998 99999999888877665 478899999999999999999874 888888777653
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.65 E-value=1.1e-13 Score=139.60 Aligned_cols=238 Identities=10% Similarity=0.047 Sum_probs=149.4
Q ss_pred EeEECCCCCEEEEee-CCCcEEEEECC-CCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICS-GDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.++|+|+|++|++++ .++.|.+|++. ++... ...... .......+.+.+. ++
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~----------------~~~~p~~i~~~~~---------g~ 92 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAAESP----------------LPGSPTHISTDHQ---------GR 92 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceE-Eeeeec----------------CCCCceEEEECCC---------CC
Confidence 459999999887765 48899999986 34332 111000 0001223444433 66
Q ss_pred EEEEEe-CCCeEEEEEccCCe----eeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeE-----Eee
Q 006808 88 LLVLGT-GGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-----KFR 156 (630)
Q Consensus 88 ~l~~~~-~~g~v~iwd~~~~~----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~-----~~~ 156 (630)
++++++ .++.|.+|++.+.. ....+ .+...+.+++++|+|+++++++ .++.|.+||+.+...+. ...
T Consensus 93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 93 FLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred EEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 667665 47889999997432 12111 2334567889999999986655 56899999997633221 111
Q ss_pred c-CCCCeEEEEEccCCCEEEEeC---CeEEEEECCC--Cc--eeeEeecC------CCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 157 A-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HK--KMQKFSGH------PGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 157 ~-~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~--~~--~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
. .......++|+|+|+++++++ ++|.+|++.. ++ .+..+..+ ......+.|+|++++++++...++
T Consensus 171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence 1 233567899999999998876 8999999973 32 23333221 122346889999999999865678
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcC
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ 282 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~ 282 (630)
.|.+|++....... ..+..... ......+.++ |+|++|++++. ++.|.+|++.
T Consensus 251 ~I~v~~i~~~~~~~-~~~~~~~~-~~~p~~~~~~-----~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 251 LISVFSVSEDGSVL-SFEGHQPT-ETQPRGFNID-----HSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEEEEeCCCCeE-EEeEEEec-cccCCceEEC-----CCCCEEEEEEccCCcEEEEEEc
Confidence 99999996543110 01111111 1112234454 99999998876 8899999864
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=133.36 Aligned_cols=226 Identities=13% Similarity=0.202 Sum_probs=160.2
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEe
Q 006808 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (630)
.|+..++|+.+.+.-|++||.-+|+..+.+........ -....++.|.+. +..|+ ++
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de-------------~taAhsL~Fs~D---------Geqlf-aG 176 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE-------------YTAAHSLQFSPD---------GEQLF-AG 176 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHh-------------hhhheeEEecCC---------CCeEe-ec
Confidence 36778999999999999999999999887764321100 112334555554 45554 45
Q ss_pred CCCeEEEEEc-cCCeee---EEcc---CCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 94 GGGDVLALAV-SAGQLK---WRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 94 ~~g~v~iwd~-~~~~~~---~~~~---~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
....|++||+ +.|... .++. .+..+-|.+++|+|. ...++.++...++-|+.-..+.++..+-+|.+.|+.+
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 5678999999 444321 1111 234677899999994 4578999998899999888889999999999999999
Q ss_pred EEccCCCEEEEeC---CeEEEEECCCC-ceeeEeecCCC-CeEEEEE--eeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 166 AVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPG-AVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 166 ~~~p~~~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~-~v~~l~~--sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
+|.++|+.|.+|. ..|..||++.. .++..+..|.. .-..|.| .|.+++|++++ .||.|++||+......
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-tdG~V~vwdlk~~gn~--- 332 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-TDGSVRVWDLKDLGNE--- 332 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-CCccEEEEecCCCCCc---
Confidence 9999999999998 58999999874 45666766765 3345555 58899998887 6999999999884321
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
+.........+..+.++ |-=..+++++.
T Consensus 333 -~sv~~~~sd~vNgvsln-----P~mpilatssG 360 (406)
T KOG2919|consen 333 -VSVTGNYSDTVNGVSLN-----PIMPILATSSG 360 (406)
T ss_pred -ccccccccccccceecC-----cccceeeeccC
Confidence 22333344444445554 65445555443
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=8.7e-15 Score=130.38 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=159.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee-------------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL------------- 152 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~------------- 152 (630)
+.+|++|+..|.|++|++++......+...|...|+.+.--|+ ..+.+-+.|+.+.+|++.-+..+
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC 103 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC 103 (323)
T ss_pred chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccc
Confidence 4458999999999999999988775554467788999999887 46888889999999998642111
Q ss_pred -EEee---------------------------------------cCCCCeEEEEEcc-CC-CEEEEeC---CeEEEEECC
Q 006808 153 -GKFR---------------------------------------ASTKGISCMAVSS-DG-KMLATAA---GQLKTFNCS 187 (630)
Q Consensus 153 -~~~~---------------------------------------~~~~~v~~l~~~p-~~-~~l~~~~---g~i~lwd~~ 187 (630)
..+. +..+.++|..+.. .+ ..++.++ |.+.+||+.
T Consensus 104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S 183 (323)
T KOG0322|consen 104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLS 183 (323)
T ss_pred cceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEcc
Confidence 0000 0113455555432 23 3344444 899999999
Q ss_pred CCcee----------eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc-cceeeeeecCCceeeeeEEec
Q 006808 188 DHKKM----------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCID 256 (630)
Q Consensus 188 ~~~~~----------~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 256 (630)
++..+ .....|..+|.++.|.+.-..=+++| .+..+..|++...... .......+.+++. .-+-+.
T Consensus 184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg-a~dkl~~~Sl~~s~gslq~~~e~~lknpGv--~gvrIR 260 (323)
T KOG0322|consen 184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG-ADDKLVMYSLNHSTGSLQIRKEITLKNPGV--SGVRIR 260 (323)
T ss_pred CCceeeccccccccccchhhccCcceeeeechhhcCCcCCC-ccccceeeeeccccCcccccceEEecCCCc--cceEEc
Confidence 87432 33356889999999987655556666 4667889988654211 0111222233321 122222
Q ss_pred CCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcC
Q 006808 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (630)
Q Consensus 257 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~ 336 (630)
||++.+|+++.|++|+||+.++++.+..
T Consensus 261 -----pD~KIlATAGWD~RiRVyswrtl~pLAV----------------------------------------------- 288 (323)
T KOG0322|consen 261 -----PDGKILATAGWDHRIRVYSWRTLNPLAV----------------------------------------------- 288 (323)
T ss_pred -----cCCcEEeecccCCcEEEEEeccCCchhh-----------------------------------------------
Confidence 8999999999999999999887766432
Q ss_pred ccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
++.|+..|.+++|+||..++ +.+|.|..|.+|++
T Consensus 289 --------LkyHsagvn~vAfspd~~lm-AaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 --------LKYHSAGVNAVAFSPDCELM-AAASKDARISLWKL 322 (323)
T ss_pred --------hhhhhcceeEEEeCCCCchh-hhccCCceEEeeec
Confidence 23677789999999998888 99999999999975
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.9e-13 Score=141.31 Aligned_cols=167 Identities=12% Similarity=0.136 Sum_probs=128.2
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEe-CC-CC--ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEID-PL-TG--SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd-~~-~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~ 188 (630)
.|...+++.+++|.++++++|..||.|.+|. +. .+ .....+.-|...|.+++|+++|.+|++|+ +.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4666789999999999999999999999995 32 11 23345667888999999999999999999 8999999999
Q ss_pred CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec--------CCceeeeeEEecCCcc
Q 006808 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME--------HPAVFMDCRCIDNGGV 260 (630)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 260 (630)
++ .+-++.-.++|..+.++||+.+.+... .|+.|.+....+..... .+..+. ........++++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~--tIsgi~~~~~~~k~~~~~l~t~~~id---- 354 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKS--TISGIKPPTPSTKTRPQSLTTGVSID---- 354 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhh--hccCccCCCccccccccccceeEEEc----
Confidence 88 445576788999999999999888877 69999998875543221 111111 123445556665
Q ss_pred CCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 261 DDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 261 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
|..+.++-.+..|.|++||+-+...+...
T Consensus 355 -pr~~~~vln~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 355 -PRTNSLVLNGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred -CCCCceeecCCCceEEEEeccccceeeeE
Confidence 76677888889999999999887766543
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.7e-13 Score=141.78 Aligned_cols=296 Identities=14% Similarity=0.140 Sum_probs=197.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.|.++||+++++|+|..||+|.||.--... ..........|..+ .++++.|.+. |.+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------~~~~t~t~lHWH~~--------~V~~L~fS~~---------G~~ 265 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSS------DDSETCTLLHWHHD--------EVNSLSFSSD---------GAY 265 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccc------cccccceEEEeccc--------ccceeEEecC---------Cce
Confidence 456999999999999999999999632100 00000111111111 3445555444 889
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec-----------
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----------- 157 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------- 157 (630)
|++|+..|.+.+|.+.+++ .+++..-.++|..+.++||+.+......|..|.+....+.....++.+
T Consensus 266 LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred EeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence 9999999999999999998 367767789999999999999999888999999987755443333322
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-----c------CCCCeEEEEEeeCCcEEEEEee-----
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-----G------HPGAVRFMTFSDNGKYVLSSAV----- 219 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-----~------h~~~v~~l~~sp~~~~l~~~~~----- 219 (630)
..+-.+.++++|.-+.++..+ |.|.+||+.+.+.+..+. . +.-.+++++.+..|.++++.-.
T Consensus 344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~ 423 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKF 423 (792)
T ss_pred ccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhh
Confidence 133467789999555555544 999999998876655442 1 2235777888888988887532
Q ss_pred --CC--CeEEEEEcCCCcccc-ceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCcccccccCce
Q 006808 220 --GE--RYIALWRTDGVKKQS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 220 --~d--~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.| -.+++|........- .......+|...++..+..+ +... ..++++.||.++||-+...+.+..+.
T Consensus 424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~-----~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~-- 496 (792)
T KOG1963|consen 424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN-----PTRSVRCVTASVDGDFKIWVFTDDSNIYKKS-- 496 (792)
T ss_pred hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec-----CcccceeEEeccCCeEEEEEEecccccCcCc--
Confidence 12 357899876654321 11122345666665555554 3333 89999999999999875554432221
Q ss_pred eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceec
Q 006808 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (630)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (630)
..++| .+.+ ..|..++..++||.||.+| +.|.+.+
T Consensus 497 -s~W~c--------------~~i~----------------------------sy~k~~i~a~~fs~dGsll--a~s~~~~ 531 (792)
T KOG1963|consen 497 -SNWTC--------------KAIG----------------------------SYHKTPITALCFSQDGSLL--AVSFDDT 531 (792)
T ss_pred -cceEE--------------eeee----------------------------ccccCcccchhhcCCCcEE--EEecCCE
Confidence 11111 0000 1366789999999999875 5667999
Q ss_pred cccceecc
Q 006808 374 KRGRYVQN 381 (630)
Q Consensus 374 ~~~w~~~~ 381 (630)
+.+|+..+
T Consensus 532 Itiwd~~~ 539 (792)
T KOG1963|consen 532 ITIWDYDT 539 (792)
T ss_pred EEEecCCC
Confidence 99998754
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.2e-12 Score=122.57 Aligned_cols=190 Identities=19% Similarity=0.285 Sum_probs=144.1
Q ss_pred eEeEECCCCCEEEEeeCC--CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
+-+-||.+ ++|..+.+ +.+++++++.+..++++.-+ ..+.++..+ .
T Consensus 50 vEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp-------------------t~IL~VrmN-----------r 97 (391)
T KOG2110|consen 50 VEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP-------------------TSILAVRMN-----------R 97 (391)
T ss_pred EEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC-------------------CceEEEEEc-----------c
Confidence 33345543 56655543 34888888887777765411 122233322 3
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccC--CCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.|+++-.+. |+|||+.+-+.+.++.. .+..++.++.+++.+.+++.-+ ..|.|.+||+.+-+.+..+..|.+.+
T Consensus 98 ~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~l 176 (391)
T KOG2110|consen 98 KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPL 176 (391)
T ss_pred ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCce
Confidence 3455555544 99999999988766653 3666788888888888877533 56899999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--C-eEEEEECCCCceeeEeecCC--CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 163 SCMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g-~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+++|+|+|.+||+++ | .||||.+.+|+.+..|.... ..|.+++|+|++++|.+++ ..++|++|.+...
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKV 250 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CCCeEEEEEeccc
Confidence 9999999999999999 6 67999999999999986443 3578999999999998887 5889999998654
No 193
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=2.8e-15 Score=143.57 Aligned_cols=225 Identities=15% Similarity=0.213 Sum_probs=173.8
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.+.|+.+|.+|+.|+..|.|..+|+.++.+..++... ..+..+.|... .. +
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-------------------Etv~Dv~~LHn---------eq-~ 184 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-------------------ETVRDVTFLHN---------EQ-F 184 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehh-------------------hhhhhhhhhcc---------hH-H
Confidence 4589999999999999999999999999998877521 23334455443 22 3
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
++......++|||-..-+. ..+ ..| ..|..+.|-|..-+|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus 185 ~AVAQK~y~yvYD~~GtEl-HCl-k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNNGTEL-HCL-KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred HHhhhhceEEEecCCCcEE-eeh-hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 4445556689998654443 233 233 5789999999887899999999999999999999999998888999999999
Q ss_pred CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCc
Q 006808 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (630)
-+-.+-+|. |+|.+|......++..+-.|.++|.+|++.++|+|++++| .|+.++|||++..... ......++.
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~ql---~t~~tp~~a 337 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQL---HTYRTPHPA 337 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeecccccc---ceeecCCCc
Confidence 888888876 8999999999998888888999999999999999999999 5999999999987643 222223333
Q ss_pred eeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
. -+.++ + +-+++++....+.||.
T Consensus 338 ~---~ls~S------q-kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 S---NLSLS------Q-KGLLALSYGDHVQIWK 360 (545)
T ss_pred c---ccccc------c-ccceeeecCCeeeeeh
Confidence 2 23332 3 3344555556899995
No 194
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=1.2e-13 Score=130.48 Aligned_cols=242 Identities=19% Similarity=0.225 Sum_probs=164.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCC----------------CcEEEEecccccccccccccccccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK----------------GQVQTEFADIASTETTSLYGNRLEREHLSVD 67 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~----------------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 67 (630)
..| -++.|+|+|++||+|+.+|.|.+|.... ......+.+|.. +
T Consensus 66 ~aV--N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~------------------d 125 (434)
T KOG1009|consen 66 RAV--NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD------------------D 125 (434)
T ss_pred cee--EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc------------------c
Confidence 456 4559999999999999999999997652 111222333333 3
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+-.++|.+. +.++++++.+..+++||+..|...... .+|...|..++|.|-++++++-+.|...+.+.+.
T Consensus 126 iydL~Ws~d---------~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 126 IYDLAWSPD---------SNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred hhhhhccCC---------CceeeeeeccceEEEEEeccceeEeec-cccccccceeecchhhhhhhhhccCcccceeeee
Confidence 445666655 788999999999999999999998555 5799999999999999999999988877777765
Q ss_pred CCceeEEee---------------------cC--CCCeEEEEEccCCCEEEEeCC-----------eEEEEECCC-Ccee
Q 006808 148 TGSLLGKFR---------------------AS--TKGISCMAVSSDGKMLATAAG-----------QLKTFNCSD-HKKM 192 (630)
Q Consensus 148 ~~~~~~~~~---------------------~~--~~~v~~l~~~p~~~~l~~~~g-----------~i~lwd~~~-~~~~ 192 (630)
..+.++... .. ..-...++|+|+|.++++.+| ..++|+-.. .++.
T Consensus 196 ~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~ 275 (434)
T KOG1009|consen 196 LKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA 275 (434)
T ss_pred eeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce
Confidence 433222111 10 123456899999999998752 234554332 2345
Q ss_pred eEeecCCCCeEEEEEeeC------------------CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEE
Q 006808 193 QKFSGHPGAVRFMTFSDN------------------GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254 (630)
Q Consensus 193 ~~~~~h~~~v~~l~~sp~------------------~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (630)
..+++...+...+.|+|- +-.+++++ .+.+.+||..+..+. +....-|-..+.. .+
T Consensus 276 ~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt--~~svyvydtq~~~P~---~~v~nihy~~iTD-ia 349 (434)
T KOG1009|consen 276 ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT--KNSVYVYDTQTLEPL---AVVDNIHYSAITD-IA 349 (434)
T ss_pred eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee--cceEEEeccccccce---EEEeeeeeeeecc-ee
Confidence 566666667777776651 22344443 568999998887654 2222223333444 44
Q ss_pred ecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 255 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
|+ +||..++..+.||...+-.+...+.
T Consensus 350 ws-----~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 350 WS-----DDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ec-----CCCcEEEEeccCCceEEEEEcchhc
Confidence 44 7999999999999888776655544
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=1.3e-13 Score=142.56 Aligned_cols=244 Identities=18% Similarity=0.210 Sum_probs=165.6
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee-----eEEccCCCCCCEEEEEEecCCC--EEEEEeC
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGS--CIYSAGA 137 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~-----~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~ 137 (630)
...++|+.+++++ ..+++.|+.+|+|.+||+..+.. +......|..+++.+.|..+-. -|++++.
T Consensus 242 ~s~v~~~~f~p~~--------p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 242 PSEVTCLKFCPFD--------PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CCceeEEEeccCC--------cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 4578899999988 67899999999999999987765 2223346889999999976443 3999999
Q ss_pred CCcEEEEeCCCCce------eEEee------cCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCC---Cc-----eeeE
Q 006808 138 DGMVCEIDPLTGSL------LGKFR------ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSD---HK-----KMQK 194 (630)
Q Consensus 138 dg~v~iwd~~~~~~------~~~~~------~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~---~~-----~~~~ 194 (630)
||.|..|+++.-.. ..... .....+++++|.|. -..+++|+ |.|+--+... .. ....
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 99999998764322 11111 11237889999883 44566666 8776633222 11 1334
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC-CCEEEEEecC
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISET 273 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d 273 (630)
+..|.++|.++.++|-+..++.++ .|-++++|.-..... .++.+......+..+.|+ |. ...++++..+
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~----Pl~~~~~~~~~v~~vaWS-----ptrpavF~~~d~~ 463 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIAS----PLLSLDSSPDYVTDVAWS-----PTRPAVFATVDGD 463 (555)
T ss_pred ccccCcceEeeecCCCccceeeee-ccceeEeccccCCCC----cchhhhhccceeeeeEEc-----CcCceEEEEEcCC
Confidence 567889999999999887666666 389999999773322 233334334434445554 44 3567788889
Q ss_pred CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcE
Q 006808 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (630)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (630)
|.|.|||+..... .|.. + .+.+.....
T Consensus 464 G~l~iWDLl~~~~----~Pv~-------------s------------------------------------~~~~~~~l~ 490 (555)
T KOG1587|consen 464 GNLDIWDLLQDDE----EPVL-------------S------------------------------------QKVCSPALT 490 (555)
T ss_pred Cceehhhhhcccc----CCcc-------------c------------------------------------ccccccccc
Confidence 9999999843211 1000 0 001112345
Q ss_pred EEeecCCcceeeccccceeccccceec
Q 006808 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.|+++|+.| +.|...|++.++++.
T Consensus 491 ~~~~s~~g~~l-avGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 491 RVRWSPNGKLL-AVGDANGTTHILKLS 516 (555)
T ss_pred eeecCCCCcEE-EEecCCCcEEEEEcC
Confidence 67788999999 999999999999884
No 196
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=7.9e-13 Score=121.33 Aligned_cols=234 Identities=15% Similarity=0.196 Sum_probs=163.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++++|+.|..-+++|..+| .+||+++.-+....-..+.+ | ..+.-+.+ ..++
T Consensus 9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~-------------G---~~~veMLf-----------R~N~ 60 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG-------------G---FKIVEMLF-----------RSNY 60 (346)
T ss_pred eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC-------------c---hhhhhHhh-----------hhce
Confidence 5679999999998887655 79999875332211111110 0 00000100 1344
Q ss_pred EEEEeCCC-------eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCceeEEeecCCC
Q 006808 89 LVLGTGGG-------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTK 160 (630)
Q Consensus 89 l~~~~~~g-------~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~ 160 (630)
++..++.+ .|.|||=...+++.++ ....+|.++.+.++ .|++. ..+.|++|.+. ..+.++.+.....
T Consensus 61 laLVGGg~~pky~pNkviIWDD~k~~~i~el--~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~N 135 (346)
T KOG2111|consen 61 LALVGGGSRPKYPPNKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSN 135 (346)
T ss_pred EEEecCCCCCCCCCceEEEEecccCcEEEEE--EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccC
Confidence 44433332 4999997777776666 36689999999765 56665 46789999987 5566666654332
Q ss_pred --CeEEEEEccCCCEEEEeC---CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCC-eEEEEEcCCC
Q 006808 161 --GISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGV 232 (630)
Q Consensus 161 --~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~-~i~vwd~~~~ 232 (630)
.+.+++-+.+..+||.-+ |.|+|.|+...+. ...+..|.+.|.+++.+.+|..+++++. .| -|||||..++
T Consensus 136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-kGTLIRIFdt~~g 214 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-KGTLIRIFDTEDG 214 (346)
T ss_pred CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-CcEEEEEEEcCCC
Confidence 344443333455666655 8999999987654 4677899999999999999999999885 55 5899999999
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.+. +.+..+.....+.++.|+ |++.+|+++|..|+++||.++.-
T Consensus 215 ~~l---~E~RRG~d~A~iy~iaFS-----p~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 TLL---QELRRGVDRADIYCIAFS-----PNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEe---eeeecCCchheEEEEEeC-----CCccEEEEEcCCCeEEEEEeecC
Confidence 866 556666666778888887 99999999999999999998653
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3e-13 Score=125.94 Aligned_cols=194 Identities=20% Similarity=0.344 Sum_probs=140.9
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.+|.+ +|++.-.-||++..|-+|++|+-.. ++...++ ......++|++|-|-.
T Consensus 100 dlr~~--aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-----------------s~sQrnvtclawRPls------- 152 (445)
T KOG2139|consen 100 DLRGV--AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-----------------SVSQRNVTCLAWRPLS------- 152 (445)
T ss_pred ceeeE--eechhhhhhhhhccCcEEEEeccCC-CCCceec-----------------chhhcceeEEEeccCC-------
Confidence 34445 8999777888999999999999665 4444443 2335678999999886
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEE-----------c--cCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCc
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWR-----------L--SDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGS 150 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~-----------~--~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~ 150 (630)
...|++|+..| |++|.....-...+ + ..+| .+|+++.|++||..+++++ .|..|.+||..++.
T Consensus 153 -aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 153 -ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred -cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 55678877765 88997643211101 1 1244 5899999999999999987 46789999999998
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.+.......+.++-+.|+|||.+|+++. +..++|+.....-.....-..+.|...+|+|.|++|+.+++.. -++|.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lys 307 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYS 307 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEE
Confidence 7766544566889999999999998887 8999996544322222333455899999999999998887543 45555
Q ss_pred cC
Q 006808 229 TD 230 (630)
Q Consensus 229 ~~ 230 (630)
+.
T Consensus 308 l~ 309 (445)
T KOG2139|consen 308 LT 309 (445)
T ss_pred Ee
Confidence 44
No 198
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5e-14 Score=135.88 Aligned_cols=284 Identities=19% Similarity=0.271 Sum_probs=191.2
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+-|..+ .|+..|..|++||.|.+|.+||+.++.....|.+ ||..... .-.|.|+..
T Consensus 143 GcVntV--~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----------------GH~~Nvf-QaKFiP~s~----- 198 (559)
T KOG1334|consen 143 GCVNTV--HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES----------------GHCNNVF-QAKFIPFSG----- 198 (559)
T ss_pred Ccccee--eecccCceeeccCccceEEeehhhccCccccccc----------------ccccchh-hhhccCCCC-----
Confidence 556444 9999999999999999999999999988776642 3322111 122444433
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeee--EEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEee---c
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR---A 157 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~---~ 157 (630)
..-+++++.+|.|++=.+.....+ ......|.++|.-++.-|+..+ |++++.|+.+.-+|++.+.+...+. .
T Consensus 199 --d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 199 --DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred --CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 455899999999988766433222 2333469999999999996655 9999999999999999876544433 2
Q ss_pred CCC---CeEEEEEccCCC-EEEEeC--CeEEEEECCCCc------eeeEeecC------CCCeEEEEEeeCCcEEEEEee
Q 006808 158 STK---GISCMAVSSDGK-MLATAA--GQLKTFNCSDHK------KMQKFSGH------PGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 158 ~~~---~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~------~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+.. ..+.++.+|... .+++++ .-+++||.+.-. .+.+|..| ...|++++|+.++.-++++-
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY- 355 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY- 355 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-
Confidence 223 568899999666 666666 578999976532 23344322 34699999997776666654
Q ss_pred CCCeEEEEEcCCCcc----------ccceeeeeecCC--ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 220 GERYIALWRTDGVKK----------QSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.|-.|+++.-..+.- .-..+++. +|. ..+-.+-+|. |...|+++|+.-|.|.||+-++++.+
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK-GHrN~~TVKgVNFfG-----PrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK-GHRNSRTVKGVNFFG-----PRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhc-ccccccccceeeecc-----CccceEEecCccceEEEEecchhHHH
Confidence 577899995433221 00111122 222 2233444555 88999999999999999999999988
Q ss_pred cccCceeEEeeccCCCcccccchhhhhhhccccccccC
Q 006808 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
+-.+.....+.|.. | ....|.+++++.+--|++
T Consensus 430 ~~MegDr~VVNCLE---p--HP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 430 RFMEGDRHVVNCLE---P--HPHLPVLASSGIDHDVKI 462 (559)
T ss_pred HHhhcccceEeccC---C--CCCCchhhccCCccceee
Confidence 87766666666533 2 223446777777764444
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=6.3e-13 Score=117.19 Aligned_cols=241 Identities=15% Similarity=0.190 Sum_probs=154.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEeccccccccccccccccccccc-ccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL-SVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~w~~~~~~~~ 81 (630)
.+||+.+ +|. ..+|++|+ ||.|+=|.+.....-...+..-. ..++...+.. -..++++.-.|.
T Consensus 62 dgpiy~~--~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe------~~~P~~~~~~evPeINam~ldP~----- 125 (325)
T KOG0649|consen 62 DGPIYYL--AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWE------VKIPMQVDAVEVPEINAMWLDPS----- 125 (325)
T ss_pred CCCeeee--eee--hhheeecc-CceEEEeeehhhhhhccchhhhh------hcCccccCcccCCccceeEeccC-----
Confidence 4688444 887 34677776 59999998764332111110000 0000000111 123333333333
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC--
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-- 159 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-- 159 (630)
.+.++++++|+.++-||+.+|+....+ ++|+..|.++.-......+++|+.||++++||++++++++.+....
T Consensus 126 ----enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 126 ----ENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred ----CCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 445666679999999999999988555 6999999999985556679999999999999999999988865422
Q ss_pred --------CCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 160 --------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 160 --------~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
..|.+++. +..++++|+ -.+.+|++++.++...|+ -..++..+.|..+ .++++| ..+.+.-|.+.
T Consensus 201 ~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l~ 274 (325)
T KOG0649|consen 201 NLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGG-EGNHVQSYTLN 274 (325)
T ss_pred hhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEec-cccceeeeeec
Confidence 24555555 456899988 589999999999888886 4567888888754 566766 57789999876
Q ss_pred CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
.--. .....+++.....+...+ | -++|-+++..+.+.|+.
T Consensus 275 Gvl~----a~ip~~s~~c~s~s~~~~-----p-~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 275 GVLQ----ANIPVESTACYSASWQTS-----P-IKFISIAGFSNKLHILK 314 (325)
T ss_pred cEEE----EeccCCccceeeecccCC-----c-eEEEEecccceeeeeee
Confidence 5321 122233332222221111 3 35566667777888764
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=132.11 Aligned_cols=223 Identities=14% Similarity=0.163 Sum_probs=157.3
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
++|||+|+|+|+++.- ++.|=|..+-+..+.|.-. ..+.-+.|...+ ...|.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl-------------------dki~yieW~ads--------~~ilC 65 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL-------------------DKIVYIEWKADS--------CHILC 65 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH-------------------HHhhheeeeccc--------eeeee
Confidence 5899999999999864 8888888776655433210 123345565443 44566
Q ss_pred EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
....++.|.+|++...+....+.. -..++.+++|+|+|+.|+ +..-+-.|.+|.+.+.+.... +-.+..+..++|+|
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHP 143 (447)
T ss_pred eeeccceEEEEEeecceeEEEecc-CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECC
Confidence 677888999999998888777754 567899999999997754 556788999999988766433 33445678999999
Q ss_pred CCCEEEEeCC-----eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC----eEEEEEcCCCccccceee
Q 006808 170 DGKMLATAAG-----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCV 240 (630)
Q Consensus 170 ~~~~l~~~~g-----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~----~i~vwd~~~~~~~~~~~~ 240 (630)
+|++.+.+++ -+.+........++.|.-.+...+.+.|+|||..+++- |. .|..|.
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw---d~~Leykv~aYe------------ 208 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW---DNVLEYKVYAYE------------ 208 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe---cchhhheeeeee------------
Confidence 9999998872 23333334455667777677788999999999887762 32 122221
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
.+.-+....++ |.+++|+.|+.|+.++|.+--+-+.+.
T Consensus 209 -----~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 209 -----RGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred -----eccceeEEEec-----cccceEEeeccchhhhhhceeeeeehh
Confidence 11223344455 889999999999999998765555443
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2e-13 Score=143.09 Aligned_cols=254 Identities=17% Similarity=0.200 Sum_probs=174.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEEC-CCC----cEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDT-LKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~-~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
..|.++++-=.-|..++++|+.||.||||+- .++ +.+..+.+..+- .. +..+ ....+.|....
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~----~~------~~r~-~~~v~dWqQ~~- 1177 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ----LP------GARG-TGLVVDWQQQS- 1177 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccccc----Cc------cCCC-CCeeeehhhhC-
Confidence 3465553333446678999999999999953 332 334434332211 11 1111 22456787664
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCc---eeEE
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS---LLGK 154 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~---~~~~ 154 (630)
..|++++.-..|+|||.....++..+..+....|+++.-+- .|+.|++|..||.|++||.+... .+..
T Consensus 1178 --------G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1178 --------GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred --------CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 34555555778999999999888888777777888887654 56899999999999999987643 4667
Q ss_pred eecCCCC--eEEEEEccCCCE-EEEeC--CeEEEEECCCCceee--EeecCC--C-CeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 155 FRASTKG--ISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQ--KFSGHP--G-AVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 155 ~~~~~~~--v~~l~~~p~~~~-l~~~~--g~i~lwd~~~~~~~~--~~~~h~--~-~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
++.|... |..+.+.+.|-- |++|+ |.|++||++...... +...|- + ..+++..++....+++++ . +.|
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~-q~i 1327 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS-A-QLI 1327 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC-c-ceE
Confidence 7888876 999999987654 88888 999999998752222 222332 3 589999999998888776 3 899
Q ss_pred EEEEcCCCcccccee-eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 225 ALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+||++...+....+. -..++.......++.|. |...++++|+.|..|.||.....
T Consensus 1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FH-----P~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFH-----PHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EEEecChhhhcccccCcccccCcCCCcceeeec-----chhHhhhhccCCceEEEeecCCc
Confidence 999998765431111 01112223334677777 88889999999999999986544
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=1.6e-13 Score=125.91 Aligned_cols=200 Identities=12% Similarity=0.153 Sum_probs=153.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
..|| .|.+|++|++.+|.+-+...|.||.....+ ..++++.|. ..++++.|.+.
T Consensus 10 ~~pi--tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd------------------~~vtgvdWap~--- 66 (361)
T KOG1523|consen 10 LEPI--TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD------------------KIVTGVDWAPK--- 66 (361)
T ss_pred cCce--eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC------------------cceeEEeecCC---
Confidence 4688 677999999999999999999999877655 455555443 35567777776
Q ss_pred cccccCCcEEEEEeCCCeEEEEEcc-CCeee--EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee----
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVS-AGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---- 152 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~-~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~---- 152 (630)
.+.|++|+.|..-++|... .++-. ..+ ..|+..++++.|+|.++.|++|+....|.+|-++...-.
T Consensus 67 ------snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 67 ------SNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred ------CCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 5569999999999999984 34322 223 358899999999999999999999999999987643322
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEEC-----CC-------------CceeeEeecCCCCeEEEEEeeCCc
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-----SD-------------HKKMQKFSGHPGAVRFMTFSDNGK 212 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~-----~~-------------~~~~~~~~~h~~~v~~l~~sp~~~ 212 (630)
+.-+.+...|.+++|+|++-++++|+ +.+++|.. +. |+.+..+....+.+..+.|+|+|.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 11233456899999999999999988 77777753 11 233344445667899999999999
Q ss_pred EEEEEeeCCCeEEEEEcCCCc
Q 006808 213 YVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.|+-.+ .|..+.+-|.....
T Consensus 220 ~lawv~-Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 220 RLAWVG-HDSTVSFVDAAGPS 239 (361)
T ss_pred EeeEec-CCCceEEeecCCCc
Confidence 999998 69999999987765
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=4.4e-14 Score=134.41 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=145.9
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeec--
Q 006808 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG-- 197 (630)
Q Consensus 121 ~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~-- 197 (630)
..++|+++|..+++++.||++|+|+..+...+.....|.+.|.++.|+|||++|++.+ ...+||+..++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS 227 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence 7899999999999999999999999888888878888999999999999999999988 7999999999977666542
Q ss_pred CCCCeEEEEEeeCC---c-EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC
Q 006808 198 HPGAVRFMTFSDNG---K-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (630)
Q Consensus 198 h~~~v~~l~~sp~~---~-~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 273 (630)
.......+.|+.++ . ++++.-..-+.|+.|++...+..........-.....++++..+ ++|++++.|+.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-----~dGkf~AlGT~d 302 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-----DDGKFLALGTMD 302 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-----CCCcEEEEeccC
Confidence 22346678888776 3 33333323456777776543321000111111223345666666 999999999999
Q ss_pred CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcE
Q 006808 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (630)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (630)
|.|-|++..+.+.+.- .|. .|...|+
T Consensus 303 GsVai~~~~~lq~~~~--------------vk~----------------------------------------aH~~~VT 328 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQY--------------VKE----------------------------------------AHLGFVT 328 (398)
T ss_pred CcEEEEEeceeeeeEe--------------ehh----------------------------------------hheeeee
Confidence 9999999865544221 111 5777899
Q ss_pred EEeecCCcceeeccccceecccccee
Q 006808 354 NLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+.|+||.+++ ++-|.|...++..+
T Consensus 329 ~ltF~Pdsr~~-~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 329 GLTFSPDSRYL-ASVSSDNEAAVTKL 353 (398)
T ss_pred eEEEcCCcCcc-cccccCCceeEEEE
Confidence 99999999999 77777777666554
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=4.5e-14 Score=125.88 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=152.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.| .|+.|..++. |.+|..-|.|++|++.+......+..+. .. ++.|...-+
T Consensus 15 ~~v--~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g-----------------~~---~it~lq~~p----- 66 (323)
T KOG0322|consen 15 SSV--TSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFG-----------------RL---FITNLQSIP----- 66 (323)
T ss_pred chh--eehhhccchh-hhcccccceEEEEEeecCccchhhhhhc-----------------cc---eeeceeecC-----
Confidence 456 3447777664 8889999999999999887766555221 11 112211111
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeee--------------EEcc------------------------------------
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLK--------------WRLS------------------------------------ 113 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~--------------~~~~------------------------------------ 113 (630)
+..+.+-+.|+.+.+|++.-+..+ ..+.
T Consensus 67 --~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 67 --NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred --CcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc
Confidence 233455555666666665442110 0000
Q ss_pred --CCCCCCEEEEEEec-CCCE--EEEEeCCCcEEEEeCCCCc----------eeEEeecCCCCeEEEEEccCCCEEEEeC
Q 006808 114 --DCHPGGVSAISFAT-HGSC--IYSAGADGMVCEIDPLTGS----------LLGKFRASTKGISCMAVSSDGKMLATAA 178 (630)
Q Consensus 114 --~~h~~~v~~~~~s~-~g~~--l~s~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 178 (630)
.+..+.+.+..+.. .+.+ +++|-.+|.|.+||+.++. .......|..+|.++.|.+.-..=++|+
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg 224 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG 224 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC
Confidence 01223455555432 3333 5677789999999999873 3333446888999999987544444555
Q ss_pred --CeEEEEECCCC--ce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeee
Q 006808 179 --GQLKTFNCSDH--KK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (630)
Q Consensus 179 --g~i~lwd~~~~--~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (630)
..+..|++... .+ .....-..-.|..+.+-||++.++++| +|+.|+||+.++..+. .++. .+..-+.+
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG-WD~RiRVyswrtl~pL---AVLk--yHsagvn~ 298 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG-WDHRIRVYSWRTLNPL---AVLK--YHSAGVNA 298 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc-cCCcEEEEEeccCCch---hhhh--hhhcceeE
Confidence 57777876532 21 112222234578889999999999998 8999999999998865 3333 33355677
Q ss_pred EEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 253 RCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
++|+ |+...+|+++.|++|.+|++
T Consensus 299 vAfs-----pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFS-----PDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeC-----CCCchhhhccCCceEEeeec
Confidence 7787 89899999999999999986
No 205
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=4.6e-15 Score=151.38 Aligned_cols=240 Identities=18% Similarity=0.158 Sum_probs=172.0
Q ss_pred CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce
Q 006808 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK 191 (630)
Q Consensus 114 ~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~ 191 (630)
.+|...|.|+.|...|.++++|+.|..++||.+.++.+.....+|.+.++.++.+.+..++++++ ..|++|-+..+.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 48999999999999999999999999999999999999999999999999999999999999998 5799999999999
Q ss_pred eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 192 ~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
+..+.+|++.|++++|+|-. +++ .||++++||.+-.-.. ......-......+.+..|. ..+..+++++
T Consensus 267 vsvLrghtgavtaiafsP~~----sss-~dgt~~~wd~r~~~~~-y~prp~~~~~~~~~~s~~~~-----~~~~~f~Tgs 335 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSS-DDGTCRIWDARLEPRI-YVPRPLKFTEKDLVDSILFE-----NNGDRFLTGS 335 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCC-CCCceEeccccccccc-cCCCCCCcccccceeeeecc-----cccccccccc
Confidence 99999999999999999964 444 7999999998821111 00000011122334444454 5678899999
Q ss_pred cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCC
Q 006808 272 ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351 (630)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~ 351 (630)
.|+....|....... +.....-+. ++.+.. .+.+++..+-... +|. .........+.+|..+
T Consensus 336 ~d~ea~n~e~~~l~~---~~~~lif~t----~ssd~~---~~~~~ar~~~~~~-----vwn---l~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAW---RSNLLIFVT----RSSDLS---SIVVTARNDHRLC-----VWN---LYTGQLLHNLMGHSDE 397 (1113)
T ss_pred CCcccccchhhHhhh---hccceEEEe----cccccc---ccceeeeeeeEee-----eee---cccchhhhhhcccccc
Confidence 999988887532211 111111111 000110 1333333322111 121 2222233456689999
Q ss_pred cEEEeecCCcceeeccccceeccccceeccc
Q 006808 352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
+..+.++|-+..++++.+.||+..+|++..+
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 9999999999888799999999999998544
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.2e-13 Score=139.74 Aligned_cols=235 Identities=11% Similarity=-0.002 Sum_probs=152.4
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 172 (630)
..|.+||....... .+ ..|...+.+++|+|+|+.|+.++.+ ..|++||+.+++.... ....+....++|+|||+
T Consensus 184 ~~i~i~d~dg~~~~-~l-t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 184 YEVRVADYDGFNQF-IV-NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred EEEEEECCCCCCce-Ee-ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 57999998765532 33 3577889999999999998877643 3699999988764322 22223345689999999
Q ss_pred EEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCc
Q 006808 173 MLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (630)
Q Consensus 173 ~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (630)
.|+++. | .|++||+.++. ...+..+...+....|+|+|+.++.++..++...||++...... ...+.+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----~~~l~~~~ 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----ASLVGGRG 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEecCCC
Confidence 888764 4 45666876665 45566677778899999999988877656778888876543221 11112222
Q ss_pred eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCc
Q 006808 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (630)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 327 (630)
....++ |+|++|+.++.++ +.+||+.++....-..... .....++|+++ .|+.++.++...
T Consensus 336 ---~~~~~S-----pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~---~~~~~~sPdG~----~i~~~s~~g~~~--- 396 (429)
T PRK01742 336 ---YSAQIS-----ADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL---DESPSISPNGI----MIIYSSTQGLGK--- 396 (429)
T ss_pred ---CCccCC-----CCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC---CCCceECCCCC----EEEEEEcCCCce---
Confidence 122344 9999998887754 6669998875432111111 11223688887 788777765332
Q ss_pred eeEEEEEcCccCceeeEEeccCCCcEEEeecCC
Q 006808 328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360 (630)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~d 360 (630)
++... .........+..|.+.+...+|||-
T Consensus 397 --~l~~~-~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 397 --VLQLV-SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --EEEEE-ECCCCceEEccCCCCCCCCcccCCC
Confidence 22221 1123345566678888888999984
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.54 E-value=2.6e-13 Score=132.24 Aligned_cols=205 Identities=15% Similarity=0.179 Sum_probs=151.1
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (630)
+.|+.+++||++.|.+ ..++.-..+..|.+.+.+-.|+++ |.-|++++.||.
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~d---------------------------GtgLlt~GEDG~ 127 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPD---------------------------GAGLLTAGEDGV 127 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCC---------------------------CceeeeecCCce
Confidence 5789999999999987 457777777766665554444444 777999999999
Q ss_pred EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEe
Q 006808 98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~ 177 (630)
|++|.-. |-...++ .....+|.|++|.|+.+.++-+ ..+.+.|=.+.....+-.++.|.+-|.++.|+|...++++|
T Consensus 128 iKiWSrs-GMLRStl-~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 128 IKIWSRS-GMLRSTV-VQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG 204 (737)
T ss_pred EEEEecc-chHHHHH-hhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeec
Confidence 9999843 4333233 2356789999999987776555 33456776777666677899999999999999999999999
Q ss_pred C--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEe
Q 006808 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 178 ~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (630)
+ -..++||. .|+.+..-..|..+|++++|+|+ +.++.++ -+++++=.. ..+.+.... |
T Consensus 205 GED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S--~nt~R~~~p---------------~~GSifnls-W 264 (737)
T KOG1524|consen 205 GEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWS--YNTARFSSP---------------RVGSIFNLS-W 264 (737)
T ss_pred CCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeee--eeeeeecCC---------------CccceEEEE-E
Confidence 9 58899996 56667666779999999999999 5555554 335552111 223333333 4
Q ss_pred cCCccCCCCCEEEEEecCCcEEE
Q 006808 256 DNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
+ +||..++.|+..|.+.+
T Consensus 265 S-----~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 265 S-----ADGTQATCGTSTGQLIV 282 (737)
T ss_pred c-----CCCceeeccccCceEEE
Confidence 3 89999999999887654
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=8.9e-13 Score=119.28 Aligned_cols=204 Identities=11% Similarity=0.153 Sum_probs=144.6
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC--eeeE-Ec-----cCCCCCCEEEEEEec-CCCEEEEEe
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKW-RL-----SDCHPGGVSAISFAT-HGSCIYSAG 136 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--~~~~-~~-----~~~h~~~v~~~~~s~-~g~~l~s~~ 136 (630)
...+.+.|.|..... ... +.++.+..+++|.+... .... .. ...+.++++++.|+. +-++|.+++
T Consensus 97 YP~tK~~wiPd~~g~----~pd--lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGV----YPD--LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCccceEecCCcccc----Ccc--hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 456677777765210 022 44556677999998742 2110 11 134668999999987 677899999
Q ss_pred CCCcEEEEeCCCCce---eEEeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEe---ecCCCCeEEEEE
Q 006808 137 ADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTF 207 (630)
Q Consensus 137 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~ 207 (630)
-|-+..|||+.++.. ...+-+|...|+.++|..++. .+|+.+ |++++||++...-...+ +....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999998743 445778999999999998654 556665 99999999876543333 222467888999
Q ss_pred eeCC-cEEEEEeeCCCeEEEEEcCCCccccceeeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 208 SDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 208 sp~~-~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
++.. +++++-..+...|.|.|++..... +..+ .|.+.+..+.|.+ ..+.+|++++.|..+.|||+.+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tp----va~L~~H~a~VNgIaWaP-----hS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTP----VARLRNHQASVNGIAWAP-----HSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcc----eehhhcCcccccceEecC-----CCCceeeecCCcceEEEEecccc
Confidence 8754 677777765668999999987644 3333 4555555555554 45689999999999999998643
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=135.08 Aligned_cols=136 Identities=21% Similarity=0.410 Sum_probs=114.0
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC--------------ee--------------eEEccCCC
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--------------QL--------------KWRLSDCH 116 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--------------~~--------------~~~~~~~h 116 (630)
...++|+.|.+-+ ...++++-.+|.+.+||.... .. +..+. --
T Consensus 219 ktsvT~ikWvpg~--------~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~-~~ 289 (636)
T KOG2394|consen 219 KSSVTCIKWVPGS--------DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH-IG 289 (636)
T ss_pred ccceEEEEEEeCC--------CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE-ec
Confidence 4689999999987 667888899999999975311 00 00000 01
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~ 194 (630)
.+.|..++|+|||++|++.+.||.++|||+.+.+.+..++.--+...|++|+|||++|++|+ .-|.||.+..++.+..
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 24789999999999999999999999999998888877777777899999999999999999 7999999999999999
Q ss_pred eecCCCCeEEEEEee
Q 006808 195 FSGHPGAVRFMTFSD 209 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp 209 (630)
-.+|..+|+.|+|.|
T Consensus 370 GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccccccceeeEeecc
Confidence 999999999999983
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.54 E-value=2.7e-13 Score=135.33 Aligned_cols=229 Identities=15% Similarity=0.213 Sum_probs=160.0
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .|++|+.||+.||+|+.|..|.||+-+-...+. + .| ...+.|+.|+|.
T Consensus 54 DtV--ycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y------------------SH-~D~IQCMsFNP~------- 104 (1081)
T KOG1538|consen 54 DTV--YCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y------------------SH-NDAIQCMSFNPI------- 104 (1081)
T ss_pred ceE--EEEEEccCCceeccCCCceeEEEecccccceee-e------------------cc-CCeeeEeecCch-------
Confidence 356 677999999999999999999999865322221 1 22 235667777776
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee---cCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR---ASTK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~ 160 (630)
...+++|+- ...-+|.......... .....|.+++|..||.+|+.|-.+|+|.+-+ .+++....+. +...
T Consensus 105 --~h~LasCsL-sdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 105 --THQLASCSL-SDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNS 177 (1081)
T ss_pred --HHHhhhcch-hhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCC
Confidence 344555554 3467888766544311 2346789999999999999999999999987 3455444443 3556
Q ss_pred CeEEEEEccCC-----CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 161 GISCMAVSSDG-----KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 161 ~v~~l~~~p~~-----~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+|.+++|+|.. ..+++.. .++.+|.+ +|+.+..-..-.-...|+.+-|+|.|++.+|+ |+.+++|.-..-.
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGs-dk~L~~fTR~Gvr 255 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGS-DKQLSLFTRDGVR 255 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccC-CCceEEEeecCeE
Confidence 99999999953 3666666 57777776 45544433333345578899999999999995 9999998644322
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.-+.+.....+..+... |++++++.|+.||+|--|++
T Consensus 256 ------LGTvg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 256 ------LGTVGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ------EeeccccceeEEEEEEc-----cCCceEEEEEccCeeehhhh
Confidence 22333344444445554 99999999999999998885
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=1e-12 Score=128.43 Aligned_cols=164 Identities=20% Similarity=0.329 Sum_probs=121.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccC----CCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCC------------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT------------ 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~----~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~------------ 148 (630)
+--+++|-..|.|.+.|+...+.. +++. -....|+|+.|-|.+. .|+.+-.+|.++++|..-
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CcceEEeeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 666889999999999998763322 2111 1336899999999544 466677899999997531
Q ss_pred --C--------------ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeC
Q 006808 149 --G--------------SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210 (630)
Q Consensus 149 --~--------------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~ 210 (630)
+ .++..+....+.|...+|+|||++||+.+ |.++|||..+.+++..++..-+...|++||||
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence 1 11222223345788899999999999999 99999999998888777777788999999999
Q ss_pred CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEec
Q 006808 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256 (630)
Q Consensus 211 ~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (630)
|+|++++| +|.-|.||.+...+. +..-+.+...+..++|.
T Consensus 344 GKyIvtGG-EDDLVtVwSf~erRV-----VARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 344 GKYIVTGG-EDDLVTVWSFEERRV-----VARGQGHKSWVSVVAFD 383 (636)
T ss_pred ccEEEecC-CcceEEEEEeccceE-----EEeccccccceeeEeec
Confidence 99999999 799999999988763 22333444455555554
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=3.3e-12 Score=128.62 Aligned_cols=320 Identities=13% Similarity=0.119 Sum_probs=179.4
Q ss_pred CEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 18 DYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 18 ~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
++++ +-..+|.|.|.|..+.+.+..+...........|+++ ++++++++.+|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------------gr~~yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------------GRYLYVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------------SSEEEEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------------CCEEEEEcCCC
Confidence 4554 4446899999999999999988754332233334444 78899999999
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEEeecC-------CCCeEEEEEc
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVS 168 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~~ 168 (630)
.|.++|+.+++.+.++..+ ....++++++||+++++++ ..+.+.++|..+.+.++.+... ...+..+..+
T Consensus 59 ~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS 136 (369)
T ss_dssp EEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred eEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence 9999999999998888644 5678999999999988765 6899999999999998887643 2367788888
Q ss_pred cCCCEEEEe-C--CeEEEEECCCCceee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 169 SDGKMLATA-A--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 169 p~~~~l~~~-~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
|....+++. - +.|.+.|....+.+. +............|+|+++|++++....+.|-++|..+++.. .....+
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v---~~i~~g 213 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV---ALIDTG 213 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE---EEEE-S
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE---EEeecc
Confidence 888855554 3 888888987765432 222234566788999999999887767889999998887643 111111
Q ss_pred CCceeeeeEEecCCc------cCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 245 HPAVFMDCRCIDNGG------VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
..........+.+-. ....+...++.-..+.+.+|+..+.+.++..+........ ..+|+++ ++.+..
T Consensus 214 ~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi--~thP~s~----~vwvd~ 287 (369)
T PF02239_consen 214 KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFI--KTHPDSR----YVWVDT 287 (369)
T ss_dssp SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--E--E--TT-S----EEEEE-
T ss_pred ccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCccee--ecCCCCc----cEEeec
Confidence 111111111110000 0012233323333345667777777666544322111110 0245555 666552
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccC-CCcEEEeecCCcceeecccccee-cccccee
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNS-GEDINLNCSQDGVLLPMSQSLLK-SKRGRYV 379 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~-~~v~~~~~s~dg~~l~~s~s~d~-~~~~w~~ 379 (630)
.-+- ....+.+.+- .......++.... ..+..+.|++||+.+.+|.-..+ .+.+++.
T Consensus 288 ~~~~---~~~~v~viD~-~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 288 FLNP---DADTVQVIDK-KTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp TT-S---SHT-EEEEEC-CGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred cCCC---CCceEEEEEC-cCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 2110 0223333332 2222233332222 24889999999998866654444 5666654
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.6e-13 Score=138.30 Aligned_cols=189 Identities=15% Similarity=0.143 Sum_probs=125.4
Q ss_pred cccceeEeEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++ ...+|||||++||+++.+ ..|++||+.++..... .... ++ .....|.|.
T Consensus 204 ~~v--~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~--------------g~----~~~~~wSPD---- 258 (429)
T PRK01742 204 QPL--MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR--------------GH----NGAPAFSPD---- 258 (429)
T ss_pred Ccc--ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC--------------Cc----cCceeECCC----
Confidence 356 556999999999988753 4699999988764321 1111 11 113456554
Q ss_pred ccccCCcEEEEE-eCCCeE--EEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCC-ceeEEe
Q 006808 81 KRKLGSSLLVLG-TGGGDV--LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG-SLLGKF 155 (630)
Q Consensus 81 ~~~~~~~~l~~~-~~~g~v--~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~-~~~~~~ 155 (630)
++.|+++ +.+|.+ ++||+.++... .+. .+...+.+..|+|||+.|+.++ .++...+|++... .....+
T Consensus 259 -----G~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 259 -----GSRLAFASSKDGVLNIYVMGANGGTPS-QLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred -----CCEEEEEEecCCcEEEEEEECCCCCeE-eec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 5556665 467764 55577666543 333 4666788999999999876554 5788888876432 222223
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
.+.. .+..|+|+|++|++++ ..+.+||+.+++.......+ ....+.|+|+|++|++++ .++.+.+|.+.
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~ 401 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-TQGLGKVLQLV 401 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-cCCCceEEEEE
Confidence 3333 4678999999998877 66777999888754322222 335678999999999988 47877777753
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.4e-12 Score=120.03 Aligned_cols=195 Identities=13% Similarity=0.248 Sum_probs=135.1
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEE
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCE 143 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~i 143 (630)
..+..-++|++. -..+++++.|..|++|+-.. .+...+.......|+|++|-|.+. -|+.|+..| |.+
T Consensus 98 ~~dlr~~aWhqH---------~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ici 166 (445)
T KOG2139|consen 98 EIDLRGVAWHQH---------IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICI 166 (445)
T ss_pred hcceeeEeechh---------hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEE
Confidence 345666788874 44578999999999999877 443344434456899999999554 577777665 899
Q ss_pred EeCCC----Cce--------eEEeecC-CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEE
Q 006808 144 IDPLT----GSL--------LGKFRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTF 207 (630)
Q Consensus 144 wd~~~----~~~--------~~~~~~~-~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~ 207 (630)
|.... ++. .+.++.. ..+|+++.|++||..+++++ ..|.|||..++..+....-..+.++-+.|
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW 246 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence 97542 121 1122221 24899999999999999998 69999999998865544444567889999
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
||||.+|+++. -|+..++|+....... ..... ..+ .+...+++ |.|++|+..+. |.-.+|.+.
T Consensus 247 SPdgd~lfaAt-~davfrlw~e~q~wt~---erw~l-gsg-rvqtacWs-----pcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 247 SPDGDVLFAAT-CDAVFRLWQENQSWTK---ERWIL-GSG-RVQTACWS-----PCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred cCCCCEEEEec-ccceeeeehhccccee---cceec-cCC-ceeeeeec-----CCCCEEEEEEc-CCceEEEEe
Confidence 99999999988 5999999965443211 01111 222 45566666 99998876655 445566543
No 215
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=2.5e-12 Score=117.54 Aligned_cols=132 Identities=18% Similarity=0.333 Sum_probs=99.2
Q ss_pred CeEEEEEccCCe-eeEEccCCCCCCEEEEEEecCCCEEEEE--eCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCC
Q 006808 96 GDVLALAVSAGQ-LKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (630)
Q Consensus 96 g~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 172 (630)
|...+|.+.... ....+.....++|.+++|+|+|+.|+++ ..++.|.+||++ ++.+..+. ...+..+.|+|+|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence 345556553322 2223322345679999999999987654 356799999996 66666664 45778999999999
Q ss_pred EEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC-----CCeEEEEEcCCC
Q 006808 173 MLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----ERYIALWRTDGV 232 (630)
Q Consensus 173 ~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~-----d~~i~vwd~~~~ 232 (630)
+|++++ |.+.+||.++.+.+.++. | ..++.++|+|+|++|+++.+. |+.++||+....
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999986 579999999888887765 3 347899999999999998753 678999998654
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2.5e-12 Score=121.25 Aligned_cols=190 Identities=15% Similarity=0.209 Sum_probs=144.8
Q ss_pred CEEEEeeCCCcEEEEECCCCcE----EEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEe
Q 006808 18 DYFAICSGDARIKIWDTLKGQV----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (630)
..|.+|-.+|.+.+|....+.. +..+..+ .....+.-.+.. ..++++|+
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-------------------~g~~~~r~~~~~--------p~Iva~GG 168 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-------------------PGLYDVRQTDTD--------PYIVATGG 168 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecC-------------------CceeeeccCCCC--------CceEecCc
Confidence 3677888899999999875431 1111111 011111111221 45667788
Q ss_pred CC--CeEEEEEccCCeeeEEccCC--------CCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCC
Q 006808 94 GG--GDVLALAVSAGQLKWRLSDC--------HPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK 160 (630)
Q Consensus 94 ~~--g~v~iwd~~~~~~~~~~~~~--------h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~ 160 (630)
.. ..+.|||+...+.+++-..- -.-.++++.|-+. ...|++++.-+.+++||.+.+ +++..|.....
T Consensus 169 ke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~ 248 (412)
T KOG3881|consen 169 KENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN 248 (412)
T ss_pred hhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence 77 66999999988665443211 1124678899886 778999999999999999865 57778887888
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+++++...|+++++++|. |.+..||++.++.+.. +.+..+.|+++..+|.+++++++| -|++++|+|+.+.+..
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-LDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-LDRYVRIHDIKTRKLL 325 (412)
T ss_pred cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-cceeEEEeecccchhh
Confidence 999999999999999998 8999999999987766 888999999999999999999999 5999999999986533
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.4e-12 Score=125.03 Aligned_cols=185 Identities=18% Similarity=0.279 Sum_probs=139.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec------CC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA------ST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~ 159 (630)
..-|++++....|+-+++..|..+..+. -..+.++++..++-..+|++|+.+|.|..||.++...+.++.. |.
T Consensus 145 scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p 223 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP 223 (703)
T ss_pred CccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence 4446777777789999999998875443 4568899999999888999999999999999998776666542 22
Q ss_pred C-----CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeC--CcEEEEEeeCCCeEEEEEc
Q 006808 160 K-----GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 160 ~-----~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~--~~~l~~~~~~d~~i~vwd~ 229 (630)
+ .|+++.|+.+|-.+++|. |.++|||+++.+++..- .+..-+|..+.|.+. +..+++. +.+.++|||-
T Consensus 224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~ 301 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDE 301 (703)
T ss_pred cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhccc
Confidence 2 499999999999999998 99999999998876543 233458999999876 3445543 4678999999
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.+++.. ..+..... +.-.|+- |++.+++++..++.+..|=+...
T Consensus 302 ~~Gk~~-----asiEpt~~-lND~C~~-----p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 302 CTGKPM-----ASIEPTSD-LNDFCFV-----PGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ccCCce-----eeccccCC-cCceeee-----cCCceEEEecCCCcceeEEcccc
Confidence 998744 22222333 3334443 88999999999998887766543
No 218
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=4.4e-12 Score=117.46 Aligned_cols=252 Identities=15% Similarity=0.189 Sum_probs=163.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCC-c----EEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKG-Q----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~-~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
++.|..+|.+||+|..+|+|.+|.-... + ....++.|...-.-+ ........+..+.|++...
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYL------kSleieEKinkIrw~~~~n------ 97 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYL------KSLEIEEKINKIRWLDDGN------ 97 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchh------hhhhhhhhhhhceecCCCC------
Confidence 4589999999999999999999964322 2 334444443322110 0112244677888988764
Q ss_pred CCcEEEEEeCCCeEEEEEccCCee-----------------------------------eEEccCCCCCCEEEEEEecCC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQL-----------------------------------KWRLSDCHPGGVSAISFATHG 129 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~-----------------------------------~~~~~~~h~~~v~~~~~s~~g 129 (630)
...+++.+.+.+|++|.+..... ...+..+|+.-|.++.++.|+
T Consensus 98 -~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 98 -LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred -ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 66788889999999998854221 112234788889999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCce---eEEeecC-----CCCeEEEEEccCC-CEE-EEeC-CeEEEEECCCCcee----eE
Q 006808 130 SCIYSAGADGMVCEIDPLTGSL---LGKFRAS-----TKGISCMAVSSDG-KML-ATAA-GQLKTFNCSDHKKM----QK 194 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~-----~~~v~~l~~~p~~-~~l-~~~~-g~i~lwd~~~~~~~----~~ 194 (630)
..++++ .|-.|.+|++.--.. +.-++.+ ..-|++..|+|.. ..+ .+.+ |+|++.|++..... +.
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 998887 677899999864322 2223333 2367889999943 333 3444 99999999854211 11
Q ss_pred e------------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-----------CCce---
Q 006808 195 F------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------HPAV--- 248 (630)
Q Consensus 195 ~------------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~--- 248 (630)
| ..--..|..+.|+++|+|+++-. =-+|++||+.....+. ...+.. ....
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~pv--~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKPV--ETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCcc--eEEeehHhHHHHHHHHhhccchhh
Confidence 1 11124578899999999998743 2589999996544320 111110 0011
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
-..| +|+ .++.++++|+..+..++|++..|.
T Consensus 332 KFec-~~s-----g~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 332 KFEC-SWS-----GNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eeEE-EEc-----CCcceEecccccceEEEecCCCCc
Confidence 1122 232 677899999999999999976654
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=8.9e-11 Score=108.04 Aligned_cols=141 Identities=16% Similarity=0.275 Sum_probs=105.3
Q ss_pred EeCCCeEEEEEccCC-eeeEEccC-CCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCce--eEEeecCCCCeEEEE
Q 006808 92 GTGGGDVLALAVSAG-QLKWRLSD-CHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSL--LGKFRASTKGISCMA 166 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~-~~~~~~~~-~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~ 166 (630)
.-..+.|+||..... +.+..+.. ....+..+++-+.+...|+. |-.-|.|++-|+...+. ...+.+|...|.|++
T Consensus 109 vvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~ 188 (346)
T KOG2111|consen 109 VVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVA 188 (346)
T ss_pred EEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEE
Confidence 334567999988743 33322221 22344555544434444444 34568999999986655 467899999999999
Q ss_pred EccCCCEEEEeC--C-eEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 167 VSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 167 ~~p~~~~l~~~~--g-~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.+-+|..+|+++ | -|+|||..+|..+..+... ...|.+++|||++.+|++++ +.|+++|+.++...
T Consensus 189 Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 189 LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE 259 (346)
T ss_pred EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence 999999999999 6 6799999999999998633 35799999999999999887 78999999987644
No 220
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.4e-12 Score=119.89 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=138.4
Q ss_pred CcEEEEEeCCCeEEEEEccC------CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC-
Q 006808 86 SSLLVLGTGGGDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS- 158 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~- 158 (630)
+.+|++|+.|..+++|++.. .+.+...-..|.+.|.|++|...+.++++|+.+++|...|+.+.+.+..+...
T Consensus 68 ~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~ 147 (609)
T KOG4227|consen 68 DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENN 147 (609)
T ss_pred CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccC
Confidence 78999999999999999853 34443444457789999999998899999999999999999999988887633
Q ss_pred -CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEe--ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 159 -TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 159 -~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~--~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+.|+.+..+|..+.+++.+ +.|.+||.+..+ .+..+ .........+-|+|....|+...+..+-+.+||.+..
T Consensus 148 ~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 148 NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 24899999999877777776 899999998765 22222 2234466788999987666555556778999999886
Q ss_pred ccccc--eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 233 KKQSA--SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 233 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
..... ...+.++.....+....|+ |+|..+.+.-....-.+||+.+.
T Consensus 228 ~~~~~~~~~~~~L~~~~~~~M~~~~~-----~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 228 ARPVYQRSMFKGLPQENTEWMGSLWS-----PSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred cchHHhhhccccCcccchhhhheeeC-----CCCCeehhhhccCCCEEeeeecc
Confidence 54311 1112222222233334454 88888877666555566776443
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.4e-11 Score=116.29 Aligned_cols=190 Identities=11% Similarity=0.122 Sum_probs=139.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCee----eEEccCCCCCCEEEEEEecCCCE-EEEEeCC--CcEEEEeCCCCceeEEeecC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSC-IYSAGAD--GMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~----~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~d--g~v~iwd~~~~~~~~~~~~~ 158 (630)
...|++|..+|.+.+|....+.. +..+ .-..++..+.-++...+ +++||.. ..+.+||+...+.+..-+..
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 67799999999999999985431 1122 12256777777775555 4558877 78999999887554332211
Q ss_pred C---------CCeEEEEEccC--CCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 159 T---------KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 159 ~---------~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
. -.++.+.|-|. ...|+++. +.+++||.+.++ ++..|.--..+++++...|.+++++++. .-+.+
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l 271 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQL 271 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccchh
Confidence 1 24578889887 78888888 899999998764 6788887788999999999999999987 58899
Q ss_pred EEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
..||++.++... | ..-+..+.+..+.+. |.+.++++++-|..++|+|+++.+.+
T Consensus 272 ~~FD~r~~kl~g--~-~~kg~tGsirsih~h------p~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 272 AKFDLRGGKLLG--C-GLKGITGSIRSIHCH------PTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred heecccCceeec--c-ccCCccCCcceEEEc------CCCceEEeeccceeEEEeecccchhh
Confidence 999999987551 1 111222333333333 78899999999999999999885443
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.7e-11 Score=125.87 Aligned_cols=235 Identities=9% Similarity=-0.026 Sum_probs=146.1
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe---CCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.+||....... .+. .+...+.+.+|+|||+.|+..+ .+..+.+|++.+++.... ....+.+..++|+|||+.
T Consensus 180 ~l~~~d~dg~~~~-~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCE-Eee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 5889998766543 232 3567899999999999887654 345799999988864332 223334557899999998
Q ss_pred EEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCe--EEEEEcCCCccccceeeeeecCC
Q 006808 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|+... | .|++||+.+++.. .+..+...+....|+|+|+.|+.++..++. |+++++.++... ... ..
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt--~~ 329 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RIT--WE 329 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----Eee--cC
Confidence 88653 3 6999999887654 344445567889999999998887643444 555566655422 111 11
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecC---CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 323 (630)
........++ |+|++|+..+.+ ..|++||+.++.... ..... ......++|+++ .|+.++.++..
T Consensus 330 ~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~----~i~~~s~~~~~ 397 (429)
T PRK03629 330 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT----MVIYSSSQGMG 397 (429)
T ss_pred CCCccCEEEC-----CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC----EEEEEEcCCCc
Confidence 1222344555 999999887653 358889988775322 11111 011223678887 77777765421
Q ss_pred cCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC
Q 006808 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (630)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (630)
..+.+.. ........+..|.+.+...+|||
T Consensus 398 ----~~l~~~~--~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 398 ----SVLNLVS--TDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ----eEEEEEE--CCCCCeEECccCCCCcCCcccCC
Confidence 1111111 11222334556777788888887
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.6e-12 Score=127.31 Aligned_cols=206 Identities=19% Similarity=0.354 Sum_probs=146.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++-|+++ .|+.+|.+||+||.|-++.|||.-..+.++.+.. ||+. .+.|+.|.|...
T Consensus 50 ~GCVN~L--eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T----------------gHta-NIFsvKFvP~tn---- 106 (758)
T KOG1310|consen 50 TGCVNCL--EWNADGELLASGSDDTRLIVWDPFEYKLLHSIST----------------GHTA-NIFSVKFVPYTN---- 106 (758)
T ss_pred cceecce--eecCCCCEEeecCCcceEEeecchhcceeeeeec----------------cccc-ceeEEeeeccCC----
Confidence 4567444 9999999999999999999999988888877642 5543 455666666553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC---------eeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCcee
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~---------~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~ 152 (630)
..++++|.+|..|++||+... +........|...|.-++..|++ +.|++++.||+++-+|++....-
T Consensus 107 ---nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 107 ---NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred ---CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 678999999999999999852 22223445788999999999988 67999999999999999863211
Q ss_pred ----------EEeecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCC--------Cc----------eeeEe-ecCC-
Q 006808 153 ----------GKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD--------HK----------KMQKF-SGHP- 199 (630)
Q Consensus 153 ----------~~~~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~--------~~----------~~~~~-~~h~- 199 (630)
..+...--...|+.++|.. .+|++|+ --.++||.+. +. ++.-| ++|.
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 1111112356899999954 5667776 4778999431 11 22222 2332
Q ss_pred ---C-------CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 200 ---G-------AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 200 ---~-------~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+ -++-+.|+|+|.-|++.- ..-.|+++|+..++..
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNEDKSP 308 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecCCCCc
Confidence 1 156678999998777754 3558999999887744
No 224
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.43 E-value=9.4e-12 Score=114.40 Aligned_cols=206 Identities=9% Similarity=0.065 Sum_probs=152.3
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEE
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC 142 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~ 142 (630)
...++|.+|++. ...++++..+..|.||....... ....+..|...|+++.|+|..+.|++|+.|..-+
T Consensus 10 ~~pitchAwn~d---------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 10 LEPITCHAWNSD---------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred cCceeeeeecCC---------CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 346889999886 67799999999999999887762 3344467999999999999999999999999999
Q ss_pred EEeCCCC---ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee---e-EeecCCCCeEEEEEeeCCcE
Q 006808 143 EIDPLTG---SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM---Q-KFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 143 iwd~~~~---~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~---~-~~~~h~~~v~~l~~sp~~~~ 213 (630)
+|....+ ++.-.+..+...++++.|+|.++.+|+|+ ..|.||-++...-- + .-+.+...|+++.|+|++-.
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 9998433 34444556788999999999999999998 57777776543211 1 11345678999999999988
Q ss_pred EEEEeeCCCeEEEEEcCCCc------cccce-------eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 214 VLSSAVGERYIALWRTDGVK------KQSAS-------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
|++++ .|+..+|+...-.. ..+.. .+.........+..+.|+ |+|..|+-.+.|..+.+=|
T Consensus 161 laaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-----~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 161 LAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-----PSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-----CCCCEeeEecCCCceEEee
Confidence 88877 69999999753211 00000 011121233445556666 9999999999999999988
Q ss_pred cCCcc
Q 006808 281 GQNIE 285 (630)
Q Consensus 281 ~~~~~ 285 (630)
.....
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 65543
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=7.2e-11 Score=123.50 Aligned_cols=214 Identities=17% Similarity=0.169 Sum_probs=138.2
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC---CCeEEEEEc
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---GGDVLALAV 103 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---~g~v~iwd~ 103 (630)
..|.+||... .....+..+...+. ...|.|. ++.|+..+. +..|++||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~------------------~p~wSpD---------G~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVL------------------TPRFSPN---------RQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeE------------------eeEECCC---------CCEEEEEEecCCCCEEEEEEC
Confidence 3688888754 33344443333333 4445543 555665543 356999999
Q ss_pred cCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCc--EEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--
Q 006808 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (630)
Q Consensus 104 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-- 178 (630)
.+++.. .+ ..+.+.+.+.+|+|||+.|+ +.+.++. |++||+.+++.. .+..+........|+|||+.|+.++
T Consensus 234 ~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 234 ETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred CCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECC
Confidence 988764 22 24566788999999999865 5555554 777898877653 4554555667899999999888765
Q ss_pred ---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCCCccccceeeeeecCCceeeeeE
Q 006808 179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 179 ---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (630)
..|++||+.++.. ..+..+...+....|+|+|++++..+... ..|.+|++..+... ... ... .....
T Consensus 311 ~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----~lt--~~~-~~~~p 382 (435)
T PRK05137 311 SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----ILT--SGF-LVEGP 382 (435)
T ss_pred CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE----ecc--CCC-CCCCC
Confidence 2789999876654 34443455667789999999998876322 36888887654322 111 111 12334
Q ss_pred EecCCccCCCCCEEEEEecC------CcEEEEEcCCc
Q 006808 254 CIDNGGVDDAGLYVLAISET------GVCYIWYGQNI 284 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~ 284 (630)
.|+ |||++|+..+.+ ..++++++..+
T Consensus 383 ~~s-----pDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 383 TWA-----PNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEC-----CCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 454 999998776543 25777777544
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=7.5e-11 Score=123.22 Aligned_cols=213 Identities=14% Similarity=0.091 Sum_probs=136.2
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC---CeEEEEEc
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV 103 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~v~iwd~ 103 (630)
.+|.+||... .....+..+...+....|+|+ ++.|+..+.. ..|++||+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpD---------------------------g~~la~~s~~~~~~~l~~~dl 235 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPD---------------------------GKKLAYVSFERGRSAIYVQDL 235 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCC---------------------------CCEEEEEecCCCCcEEEEEEC
Confidence 3688999854 333444444333444444444 5566666533 45999999
Q ss_pred cCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCC--cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--
Q 006808 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (630)
Q Consensus 104 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-- 178 (630)
.+++... + ..+.+...++.|+|+|+.++ +.+.+| .|++||+.+++.. .+..+.......+|+|+|+.|+.++
T Consensus 236 ~~g~~~~-l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 236 ATGQREL-V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CCCCEEE-e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC
Confidence 8887642 2 13344556889999999765 455555 5999999888754 4444545556789999999888766
Q ss_pred -C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCCccccceeeeeecCCceeeeeE
Q 006808 179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 179 -g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (630)
| .|+++++.+++.. .+..+......++|+|+|++++..+..++ .|.+|++.+++.. . +.+.... ...
T Consensus 313 ~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~----~--Lt~~~~~-~~p 384 (433)
T PRK04922 313 GGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR----T--LTPGSLD-ESP 384 (433)
T ss_pred CCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE----E--CCCCCCC-CCc
Confidence 3 5888888776543 33323344557899999999988653332 6999999876532 1 1121111 223
Q ss_pred EecCCccCCCCCEEEEEecC---CcEEEEEcCC
Q 006808 254 CIDNGGVDDAGLYVLAISET---GVCYIWYGQN 283 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~ 283 (630)
.|+ |+|++|+..+.+ +.|++++...
T Consensus 385 ~~s-----pdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 385 SFA-----PNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred eEC-----CCCCEEEEEEecCCceEEEEEECCC
Confidence 454 999988877663 3577777743
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=4e-11 Score=120.87 Aligned_cols=192 Identities=18% Similarity=0.222 Sum_probs=132.2
Q ss_pred CcEEE-EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 86 SSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 86 ~~~l~-~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+++++ +-..+|.|.+.|..+.+.+.++..++ ..-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 34454 45567999999999999888875433 234567899999999999999999999999999999998644 4688
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceeeEeecC-------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
++++|||+++++++ +.+.++|.++.+.++.++.. ...+.++..+|....++++-.+-+.|.+.|....+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999887 89999999999988887533 346778888898886766654457888888776543
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCCccccc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELR 288 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~ 288 (630)
. ....+.. .....-..+. |++++++++ ..++.|-++|.++++.+.
T Consensus 163 ~---~~~~i~~-g~~~~D~~~d-----pdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 163 L---KVTTIKV-GRFPHDGGFD-----PDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp E---EEEEEE---TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred c---ceeeecc-cccccccccC-----cccceeeecccccceeEEEeeccceEEE
Confidence 3 1222222 2222234555 899987665 457789999998876654
No 228
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=8.9e-13 Score=127.43 Aligned_cols=274 Identities=11% Similarity=0.086 Sum_probs=189.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCC-Ccee--EEeecCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLT-GSLL--GKFRASTK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~-~~~~--~~~~~~~~ 160 (630)
+..+++|+.+..|.+||...+.....+..+|...|..-.|-| +...+++++.||.|++=.+.. +.+. ..+..|.+
T Consensus 154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g 233 (559)
T KOG1334|consen 154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG 233 (559)
T ss_pred CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence 889999999999999999999998899999999999999988 345699999999999887643 3332 33566889
Q ss_pred CeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEee---cCCC---CeEEEEEeeCCc-EEEEEeeCCCeEEEEEcC
Q 006808 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS---GHPG---AVRFMTFSDNGK-YVLSSAVGERYIALWRTD 230 (630)
Q Consensus 161 ~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~~---~h~~---~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~ 230 (630)
+|+.++.-|+.. -|.+++ +.+.-+|++.+.+-..+. .+.. ....++..|... ++++++ .|..+++||.+
T Consensus 234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R 312 (559)
T KOG1334|consen 234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG-SDQFARVYDQR 312 (559)
T ss_pred ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC-hhhhhhhhccc
Confidence 999999999654 455555 788889998876543332 2223 466788888776 566666 69999999987
Q ss_pred CCcccc------ceee-eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc------------ccc-c
Q 006808 231 GVKKQS------ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE------------LRN-T 290 (630)
Q Consensus 231 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------------~~~-~ 290 (630)
.-.... ..|. .........|.++.++ .++.-|++.-.|-.|++|.-.-+.. ++. +
T Consensus 313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred chhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 644320 0010 0111334456777776 6777777878888999995221111 011 1
Q ss_pred Cce--eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccc
Q 006808 291 KAT--KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ 368 (630)
Q Consensus 291 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~ 368 (630)
+.+ ...+....+|.|... ++++|+-+|+|.+|+. .....+.-+.+...-|.|+.-+|--..| +|+
T Consensus 388 KGHrN~~TVKgVNFfGPrsE----yVvSGSDCGhIFiW~K--------~t~eii~~MegDr~VVNCLEpHP~~PvL-AsS 454 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFFGPRSE----YVVSGSDCGHIFIWDK--------KTGEIIRFMEGDRHVVNCLEPHPHLPVL-ASS 454 (559)
T ss_pred cccccccccceeeeccCccc----eEEecCccceEEEEec--------chhHHHHHhhcccceEeccCCCCCCchh-hcc
Confidence 111 123444556777766 9999998777766442 1222222333444478999999998999 999
Q ss_pred cceeccccce
Q 006808 369 SLLKSKRGRY 378 (630)
Q Consensus 369 s~d~~~~~w~ 378 (630)
+.|..||+|.
T Consensus 455 Gid~DVKIWT 464 (559)
T KOG1334|consen 455 GIDHDVKIWT 464 (559)
T ss_pred CCccceeeec
Confidence 9999999995
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=6.1e-11 Score=123.30 Aligned_cols=191 Identities=16% Similarity=0.190 Sum_probs=126.2
Q ss_pred eEeEECCCCCEEEEeeC---CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 9 ILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
.+.+|||||+.||..+. +..|.+|++.+|+.... .... ++ .....|.|.
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~--------------~~----~~~~~~SPD--------- 253 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP--------------RH----NGAPAFSPD--------- 253 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCC--------------CC----cCCeEECCC---------
Confidence 56799999999987653 45799999988764332 1111 11 113455554
Q ss_pred CcEEEE-EeCCC--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-C--cEEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVL-GTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~-~~~~g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~ 159 (630)
+..|+. .+.+| .|++||+.++... .+. .+...+....|+|+|+.|+.++.+ + .|..+|+.+++.. .+....
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~-~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~ 330 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEG 330 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEE-Ecc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCC
Confidence 554554 34455 4999999988764 333 344567899999999988766643 4 4555577666543 334344
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC---eEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~---~i~vwd~~~ 231 (630)
.......|+|+|++++..+ ..|++||+.++.. ..+.. ........|+|||++++.++. ++ .+.++++..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~-~~~~~~l~~~~~~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSS-QGMGSVLNLVSTDG 407 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEc-CCCceEEEEEECCC
Confidence 4566789999999988765 3689999988764 33432 223346789999999998874 54 367777755
Q ss_pred Cc
Q 006808 232 VK 233 (630)
Q Consensus 232 ~~ 233 (630)
..
T Consensus 408 ~~ 409 (429)
T PRK03629 408 RF 409 (429)
T ss_pred CC
Confidence 43
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=5.7e-11 Score=123.64 Aligned_cols=202 Identities=18% Similarity=0.163 Sum_probs=126.5
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.++|....... .+. .+...+.+.+|+|||+.|+..+.. ..|.+||+.+++... +....+.+.+.+|+|||+.
T Consensus 177 ~L~~~D~dG~~~~-~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 177 QLQISDADGQNAQ-SAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEEECCCCCCce-Eec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4777787543332 333 467789999999999998876642 359999999887643 3333455678999999998
Q ss_pred EEEe-C--C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc--CCCccccceeeeeecCC
Q 006808 174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~-~--g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~ 246 (630)
|+.. + | .|+++|+.++. ...+..+........|+|||++++.++..++...+|.+ .++... .+ ... .
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~---~l-t~~-g 327 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ---RV-TFT-G 327 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE---EE-ecC-C
Confidence 8754 3 4 46666766554 44555565566778999999998877644555666654 343321 11 111 1
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
. ......|+ |+|++|+..+.++ .|++||+.+++...-... . ......++|+++ .|+.++.+
T Consensus 328 ~-~~~~~~~S-----pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~----~l~~~~~~ 391 (427)
T PRK02889 328 S-YNTSPRIS-----PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGR----YILYATQQ 391 (427)
T ss_pred C-CcCceEEC-----CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCC----EEEEEEec
Confidence 1 11223455 9999998877654 699999887753221111 0 011223677776 56555543
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=3.2e-11 Score=110.30 Aligned_cols=154 Identities=15% Similarity=0.216 Sum_probs=106.5
Q ss_pred EEEEEecCCCEEEEEeC----------CCcEEEEeCCC-CceeEEeec-CCCCeEEEEEccCCCEEEEeC----CeEEEE
Q 006808 121 SAISFATHGSCIYSAGA----------DGMVCEIDPLT-GSLLGKFRA-STKGISCMAVSSDGKMLATAA----GQLKTF 184 (630)
Q Consensus 121 ~~~~~s~~g~~l~s~~~----------dg~v~iwd~~~-~~~~~~~~~-~~~~v~~l~~~p~~~~l~~~~----g~i~lw 184 (630)
..+.|+|+|.+|+.-.. -+...+|-++. +.....+.. ..++|.+++|+|+|..+++.. +.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46778888887554322 12344554422 233444443 345799999999999877653 589999
Q ss_pred ECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC--CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC
Q 006808 185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (630)
Q Consensus 185 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (630)
|++ ++.+..+. ...+..+.|+|+|+++++++.. .|.|.+||..+.+. +....+.. ...+.|+ |
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-----i~~~~~~~--~t~~~Ws-----P 153 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-----ISTFEHSD--ATDVEWS-----P 153 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-----eeccccCc--EEEEEEc-----C
Confidence 996 66666664 5677899999999999998743 36799999996653 33444433 3455666 9
Q ss_pred CCCEEEEEec------CCcEEEEEcCCccccccc
Q 006808 263 AGLYVLAISE------TGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 263 ~~~~l~s~s~------dg~i~iwd~~~~~~~~~~ 290 (630)
+|+++++++. |+.++||+. +|+.+...
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 9999999875 788999997 46665443
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=5.2e-11 Score=124.38 Aligned_cols=175 Identities=10% Similarity=0.060 Sum_probs=119.9
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.+||....... .+. .+...+.+.+|+|+|+.|+.++. ...|++||+.+++... +....+...++.|+|+|+.
T Consensus 185 ~l~i~D~~g~~~~-~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQ-TIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCce-Eee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4889998655443 333 46678999999999999887763 3469999998886543 3333445567899999998
Q ss_pred EEEe-C----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCe--EEEEEcCCCccccceeeeeecCC
Q 006808 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~-~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|+.. + ..|++||+.+++. ..+..+.......+|+|+|++|+.++..++. |+++++.+++.. .+ ... .
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~l-t~~-g 335 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---RL-TFQ-G 335 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---Ee-ecC-C
Confidence 7654 2 3799999988764 4455565556778999999999887644444 666777665422 11 111 1
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcCCccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEE 286 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~ 286 (630)
.......|+ |+|++|+..+.++ .|.+||+.+++.
T Consensus 336 -~~~~~~~~S-----pDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 336 -NYNARASVS-----PDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred -CCccCEEEC-----CCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 112234555 9999998876543 699999877754
No 233
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.7e-12 Score=125.66 Aligned_cols=212 Identities=14% Similarity=0.251 Sum_probs=150.6
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCC
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADG 139 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg 139 (630)
||.+ -+.|+.|... |.+|++|+.|-.+.|||+-..+.+..+..+|...|.++.|-| +.+.+++|..|.
T Consensus 48 GH~G-CVN~LeWn~d---------G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 48 GHTG-CVNCLEWNAD---------GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred cccc-eecceeecCC---------CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 5543 5668888776 899999999999999999998988888889999999999998 456789999999
Q ss_pred cEEEEeCCCC----------ceeEEeecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCCCceee----------Eee
Q 006808 140 MVCEIDPLTG----------SLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQ----------KFS 196 (630)
Q Consensus 140 ~v~iwd~~~~----------~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~~~~~~----------~~~ 196 (630)
.|+++|+... .....+..|...|..++..|++ ..+.+++ |+|+-+|++...... .+.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999842 3445577788899999999988 6677777 999999998643111 111
Q ss_pred cCCCCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCccc-------------cceeeeee--cCC----------ceee
Q 006808 197 GHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQ-------------SASCVLAM--EHP----------AVFM 250 (630)
Q Consensus 197 ~h~~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~-------------~~~~~~~~--~~~----------~~~~ 250 (630)
..--...++.++|... +|++++ .|-..++||.+...+. ...|+..+ .|. ....
T Consensus 198 ~~lielk~ltisp~rp~~laVGg-sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGG-SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred hhhheeeeeeecCCCCceEEecC-CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 1123467889999765 566666 5899999995332110 01111111 111 1123
Q ss_pred eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
+.+.|+ |+|.-|+..-..-.|++||+..++....
T Consensus 277 t~vtfn-----pNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 277 TYVTFN-----PNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EEEEEC-----CCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 444555 9987777665556899999987765443
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=1.4e-09 Score=109.88 Aligned_cols=242 Identities=15% Similarity=0.209 Sum_probs=150.1
Q ss_pred eEECCCCCEEEEeeC----CCcEEEEECCC--CcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 11 TSFSPALDYFAICSG----DARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 11 ~~fs~dg~~las~s~----dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
++++|++++|.++.. +|.|..|.+.. +.+.. +.... ......+.++..+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~-~~~~~---------------~~g~~p~~i~~~~~-------- 97 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL-LNSVP---------------SGGSSPCHIAVDPD-------- 97 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE-EEEEE---------------ESSSCEEEEEECTT--------
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE-eeeec---------------cCCCCcEEEEEecC--------
Confidence 489999999988876 57888888765 33322 21100 00111122222222
Q ss_pred CCcEEEEEe-CCCeEEEEEccC-CeeeEE--cc----------CCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCC
Q 006808 85 GSSLLVLGT-GGGDVLALAVSA-GQLKWR--LS----------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG 149 (630)
Q Consensus 85 ~~~~l~~~~-~~g~v~iwd~~~-~~~~~~--~~----------~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~ 149 (630)
+.+|+++. .+|.|.++++.. +..... .. ........++.|+|+|++++++. ....|.+|++...
T Consensus 98 -g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 98 -GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp -SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred -CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 66677766 578899999987 333211 11 11234578999999999988775 3447999998765
Q ss_pred c--e--eEEeec-CCCCeEEEEEccCCCEEEEeC---CeEEEEECC--CCc--eeeEeec----C--CCCeEEEEEeeCC
Q 006808 150 S--L--LGKFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHK--KMQKFSG----H--PGAVRFMTFSDNG 211 (630)
Q Consensus 150 ~--~--~~~~~~-~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~--~~~--~~~~~~~----h--~~~v~~l~~sp~~ 211 (630)
. . ...+.. .......++|+|+++++.+.. ++|.+|++. ++. .+..+.. . ......|.++|+|
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG 256 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS
T ss_pred CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC
Confidence 4 3 222332 344779999999999988876 799999887 443 2222221 1 1257889999999
Q ss_pred cEEEEEeeCCCeEEEEEcCC--CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEc--CCcc
Q 006808 212 KYVLSSAVGERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYG--QNIE 285 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~--~~~~ 285 (630)
++|+++....+.|.+|++.. +... .+..........+.+.++ |+|++|++++. ++.|.+|++ .+|.
T Consensus 257 ~~lyvsnr~~~sI~vf~~d~~~g~l~---~~~~~~~~G~~Pr~~~~s-----~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLDPATGTLT---LVQTVPTGGKFPRHFAFS-----PDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp SEEEEEECTTTEEEEEEECTTTTTEE---EEEEEEESSSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CEEEEEeccCCEEEEEEEecCCCceE---EEEEEeCCCCCccEEEEe-----CCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 99999887788999999943 3322 222222223334555665 99999998875 668999975 4554
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.4e-10 Score=121.37 Aligned_cols=195 Identities=15% Similarity=0.154 Sum_probs=130.5
Q ss_pred cccceeEeEECCCCCEEEEeeC---CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++ .+.+|||||+.||..+. +..|.+||+.++.... +....+.+. ...|.|.
T Consensus 202 ~~v--~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~------------------~~~~SPD---- 256 (435)
T PRK05137 202 SLV--LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTF------------------APRFSPD---- 256 (435)
T ss_pred CCe--EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCccc------------------CcEECCC----
Confidence 356 56699999999998764 4689999998886532 322222222 3345443
Q ss_pred ccccCCcEE-EEEeCCCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CC--cEEEEeCCCCceeEE
Q 006808 81 KRKLGSSLL-VLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGK 154 (630)
Q Consensus 81 ~~~~~~~~l-~~~~~~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg--~v~iwd~~~~~~~~~ 154 (630)
+..| ++.+.+|. |++||+.++... .+. .+........|+|||+.|+.++. +| .|++||+..++.. .
T Consensus 257 -----G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~ 328 (435)
T PRK05137 257 -----GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-R 328 (435)
T ss_pred -----CCEEEEEEecCCCceEEEEECCCCceE-Ecc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-E
Confidence 4444 45555555 888899887764 343 45566778999999998876653 33 6888898766543 3
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC-----CeE
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYI 224 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d-----~~i 224 (630)
+..+...+....|+|+|+.|+... ..|.+||+.++. ...+. ....+..+.|+|||+.++..+... ..|
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L 406 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKL 406 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceE
Confidence 433445567789999999998765 268889986554 33333 223467889999999988765322 257
Q ss_pred EEEEcCCCc
Q 006808 225 ALWRTDGVK 233 (630)
Q Consensus 225 ~vwd~~~~~ 233 (630)
.++++..+.
T Consensus 407 ~~~dl~g~~ 415 (435)
T PRK05137 407 YTVDLTGRN 415 (435)
T ss_pred EEEECCCCc
Confidence 777876654
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.36 E-value=2.6e-11 Score=129.56 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=159.4
Q ss_pred EEccCCeeeEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCC-------CceeEEeecCCCCeEEEEEccCCC
Q 006808 101 LAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGK 172 (630)
Q Consensus 101 wd~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~~ 172 (630)
|+++ |..+..+ ..|+..|..++.++. +.+|++||.||+|++|+++. .+...++......+.++...+.+.
T Consensus 1034 W~p~-G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPR-GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCcc-ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 4443 4455444 468888989988774 48999999999999999863 234445555567899999999999
Q ss_pred EEEEeC--CeEEEEECCCC--c-----eeeEeecC-CCCeEE-EEEeeC-Cc-EEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 173 MLATAA--GQLKTFNCSDH--K-----KMQKFSGH-PGAVRF-MTFSDN-GK-YVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 173 ~l~~~~--g~i~lwd~~~~--~-----~~~~~~~h-~~~v~~-l~~sp~-~~-~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+|+++ |.|++.++... + +.+....+ .+.+.+ -+|... +. .++.+. .-+.|..||++..... .
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T-~~~~iv~~D~r~~~~~---w 1187 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT-DLSRIVSWDTRMRHDA---W 1187 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEE-eccceEEecchhhhhH---H
Confidence 999998 99999988652 1 11111222 223333 344332 23 444444 5788999999987644 3
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee---ccCCCcccccchhhhhhh
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS---SEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~ 316 (630)
..........++..+.+ |.+.+++.|+..|.+.+||++-+..+.....+..+.. +...+.+.. ...+.+
T Consensus 1188 ~lk~~~~hG~vTSi~id-----p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~---S~~vs~ 1259 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVID-----PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE---SVSVSA 1259 (1431)
T ss_pred hhhcCccccceeEEEec-----CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCC---ceEEEe
Confidence 33444444556677776 8899999999999999999988877765443221111 111122211 113334
Q ss_pred cc-ccccccCCc------eeEEEEE-cCccCceeeEEe----ccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 317 AK-LQDIVKPAS------VHTFVAY-GLLLKPSFQKIL----VNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 317 ~~-~d~~~~~~~------~~~~~~~-g~~~~~~~~~~~----~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
++ ..+-+..|+ ..++.+. +......+.... .+.-....+.+..-+.++ .+|+.|..||.|+...
T Consensus 1260 ~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~-ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFL-LTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCcee-eecCCccceeeccCCC
Confidence 43 333333332 1111111 111111111111 233344445555555566 7888899999999754
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.6e-10 Score=118.72 Aligned_cols=173 Identities=14% Similarity=0.113 Sum_probs=109.7
Q ss_pred CcEEEEEeC-C--CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEE--eCCCCceeEEeecCC
Q 006808 86 SSLLVLGTG-G--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEI--DPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~-~--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iw--d~~~~~~~~~~~~~~ 159 (630)
++.|+..+. + ..|.+||+.+++... +. ...+.+.+..|+|||+.|+ +.+.+|...+| |+..+. ...+..+.
T Consensus 207 G~~la~~s~~~~~~~I~~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~ 283 (427)
T PRK02889 207 GTKLAYVSFESKKPVVYVHDLATGRRRV-VA-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS 283 (427)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCCEEE-ee-cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence 555666553 2 359999999887642 21 2335567899999999876 56677776665 454444 44555455
Q ss_pred CCeEEEEEccCCCEEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCC
Q 006808 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~ 232 (630)
.......|+|||+.|+..+ | .|+.+++.++... .+..+........|+|+|++++.++..++ .|.+||+.++
T Consensus 284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 5567789999999888665 4 4555565555432 22222333456789999999988764332 6999999877
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
... ... .... .....|+ |+|++|+.++.++
T Consensus 363 ~~~----~lt--~~~~-~~~p~~s-----pdg~~l~~~~~~~ 392 (427)
T PRK02889 363 QVT----ALT--DTTR-DESPSFA-----PNGRYILYATQQG 392 (427)
T ss_pred CeE----Ecc--CCCC-ccCceEC-----CCCCEEEEEEecC
Confidence 532 111 1111 1233454 9999988887644
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.33 E-value=9.4e-13 Score=126.50 Aligned_cols=191 Identities=17% Similarity=0.225 Sum_probs=156.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
|..++.|+..|.|-.+|..++.....+. -...|.++.|-.+..+|+++ ....+++|| ..|..++.++.+ ..|..+
T Consensus 141 GrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~-~~v~rL 215 (545)
T KOG1272|consen 141 GRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRH-IRVARL 215 (545)
T ss_pred ccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhc-Cchhhh
Confidence 8899999999999999999999877764 34678999998777666665 677899999 567777777744 468999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.|-|-.-+|++++ |-++.-|+.+|+.+..+....+.+..++-+|-+..+-++. ..|+|.+|......+. ...+
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh-snGtVSlWSP~skePL----vKiL 290 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH-SNGTVSLWSPNSKEPL----VKIL 290 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC-CCceEEecCCCCcchH----HHHH
Confidence 9999988888887 8999999999999999887888899999999888777777 5999999999887754 2233
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
.|.+ .+..+++. ++|.|++|.+.|..++|||++...++.+...
T Consensus 291 cH~g-~V~siAv~-----~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 291 CHRG-PVSSIAVD-----RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred hcCC-CcceEEEC-----CCCcEEeecccccceeEeeeccccccceeec
Confidence 3444 44556666 8999999999999999999998887665543
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=4.2e-10 Score=103.89 Aligned_cols=234 Identities=14% Similarity=0.214 Sum_probs=148.1
Q ss_pred CCcccceeEeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEeccccccccccccccccccccc----------------
Q 006808 2 GSSNIRDILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL---------------- 64 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---------------- 64 (630)
+++++ .+++|||||+.++ +..-+-+|.||.+.+.+.... +-....+....|.++ |..
T Consensus 90 g~agl--s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~d---g~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 90 GQAGL--SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPD---GQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred CCCcc--eeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCC---CceeeeeecccHHHHHHHH
Confidence 45677 6679999996555 555689999999987665432 111222233344443 211
Q ss_pred --------------ccceeeEEecccccccccccCCcEEEEEeCCCe-EEEEEccCCeeeEEccCCCCCCEEEEEEecCC
Q 006808 65 --------------SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFATHG 129 (630)
Q Consensus 65 --------------~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~-v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g 129 (630)
..+.+.+.|.| ||. +.+||..-.-.+..+ .-.-++..+.|+|.+
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsP-------------------dg~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSP-------------------DGNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCN 222 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECC-------------------CCcEEEEecchhhheeeee--eeccceeEEEecccc
Confidence 11222233333 233 556764433222222 122578999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEe------------------------------------------------------
Q 006808 130 SCIYSAGADGMVCEIDPLTGSLLGKF------------------------------------------------------ 155 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~~~~~~~~~------------------------------------------------------ 155 (630)
++++.|+.|+.+++.+--+.+....|
T Consensus 223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p 302 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP 302 (447)
T ss_pred ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence 99999999999888653322211111
Q ss_pred ------e------cCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 156 ------R------ASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 156 ------~------~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+ ...-.+.-++|++|..++++-. +.+.+||+++.+....+. ...+|....|.|....|+.+.
T Consensus 303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct- 380 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT- 380 (447)
T ss_pred eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc-
Confidence 0 0112466789999999999876 689999998876544443 567899999999988888776
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
+...+++|...... ++ ..+.++..+..+.+. .+|.+++.++.|..
T Consensus 381 g~srLY~W~psg~~-----~V-~vP~~GF~i~~l~W~-----~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 381 GKSRLYFWAPSGPR-----VV-GVPKKGFNIQKLQWL-----QPGEFIVLCGKDAF 425 (447)
T ss_pred CCceEEEEcCCCce-----EE-ecCCCCceeeeEEec-----CCCcEEEEEcCCce
Confidence 46679999887643 22 233344455555555 67888888888864
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.27 E-value=4.8e-09 Score=106.04 Aligned_cols=277 Identities=15% Similarity=0.180 Sum_probs=162.9
Q ss_pred EEEEeCC----CeEEEEEc--cCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC----CCcEEEEeCCCC--c--eeEE
Q 006808 89 LVLGTGG----GDVLALAV--SAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTG--S--LLGK 154 (630)
Q Consensus 89 l~~~~~~----g~v~iwd~--~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----dg~v~iwd~~~~--~--~~~~ 154 (630)
+++|+.. +.|.+|++ .+++....-...-......++++|++++|+++.. ++.|..|.+... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556655 56888887 5555421111123345678899999999999876 568988887653 3 3334
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCC-CceeeE---ee--c--------CCCCeEEEEEeeCCcEEEEE
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK---FS--G--------HPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~~~~---~~--~--------h~~~v~~l~~sp~~~~l~~~ 217 (630)
..........++++|++++|+++. |.|.++++.. +..... +. + ......++.|+|++++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 443445667899999999999986 8999999987 433221 21 0 12357889999999999998
Q ss_pred eeCCCeEEEEEcCCCccc-cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcC--Ccc--cccccC
Q 006808 218 AVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ--NIE--ELRNTK 291 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~--~~~--~~~~~~ 291 (630)
......|.+|++...... ........ ....-.+.+.|+ |+++++.+.++ ++.|.+|++. ++. .+....
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 766778999999876521 11112222 233344556676 99998877765 7789999887 332 111110
Q ss_pred ce-----eEEeeccCCCcccccchhhhhhhcccc-ccccCCceeEEEEEcC-ccCceeeEEeccCCCcEEEeecCCccee
Q 006808 292 AT-----KILSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGL-LLKPSFQKILVNSGEDINLNCSQDGVLL 364 (630)
Q Consensus 292 ~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~g~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (630)
.. .........++|+++ .++++... +.+. ++..... .....++.+...-..-..++++|+|++|
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~----~lyvsnr~~~sI~-----vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGR----FLYVSNRGSNSIS-----VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSS----EEEEEECTTTEEE-----EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred eccccccccCCceeEEEecCCC----EEEEEeccCCEEE-----EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence 00 000112223567776 66655543 1111 1111111 1112223332222335889999999999
Q ss_pred eccccceeccccceec
Q 006808 365 PMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 365 ~~s~s~d~~~~~w~~~ 380 (630)
.+++..++.+.++++.
T Consensus 307 ~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 307 YVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 6677677788887763
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.2e-09 Score=108.07 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=92.9
Q ss_pred cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEE
Q 006808 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
++++.++....+...+. ..++|+++.|+|+|+-++++. ..+.+||++ +.++..| ..++=+++-|+|.|++++
T Consensus 252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEE
Confidence 45555555222322222 367999999999998887776 589999984 5555555 466778999999999999
Q ss_pred EEeeCC--CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec------CCcEEEEEcCCcccc
Q 006808 216 SSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEEL 287 (630)
Q Consensus 216 ~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~ 287 (630)
.+|.++ |.+-|||+.+.+.. ..+... ..+...|+ |||.++++++. |+.++||+. +|..+
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i-----~~~~a~--~tt~~eW~-----PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLI-----AKFKAA--NTTVFEWS-----PDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred EeecCCCCCceEEEeccchhhc-----cccccC--CceEEEEc-----CCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 998643 68999999986533 222222 23345555 99999999876 678999997 55554
Q ss_pred c
Q 006808 288 R 288 (630)
Q Consensus 288 ~ 288 (630)
.
T Consensus 395 ~ 395 (566)
T KOG2315|consen 395 H 395 (566)
T ss_pred e
Confidence 4
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.24 E-value=2.9e-09 Score=111.50 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=118.2
Q ss_pred CcEEEEEeCC---CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCC--cEEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADG--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~~---g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg--~v~iwd~~~~~~~~~~~~~~ 159 (630)
++.|+.++.. ..|++||+.+++... + ..+.+.+.+++|+|+|+.|+. .+.++ .|++||+.+++.. .+..+.
T Consensus 201 g~~la~~~~~~~~~~i~v~d~~~g~~~~-~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~ 277 (417)
T TIGR02800 201 GQKLAYVSFESGKPEIYVQDLATGQREK-V-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP 277 (417)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence 5666666543 369999999886542 2 235566778999999987764 44444 5889999877543 344344
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC---eEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~---~i~vwd~~~ 231 (630)
.......|+|+|+.|+.++ ..|+++|+.+++. ..+..+...+..+.|+|+|++++.++. ++ .|.+||+.+
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~-~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHR-EGGGFNIAVMDLDG 355 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEc-cCCceEEEEEeCCC
Confidence 4456779999999887665 2788999887764 344445566778899999999988874 44 788899877
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEE
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWY 280 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd 280 (630)
+... .+ ..... .....|+ |+|++|+..+.++ .+++++
T Consensus 356 ~~~~---~l---~~~~~-~~~p~~s-----pdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 356 GGER---VL---TDTGL-DESPSFA-----PNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CCeE---Ec---cCCCC-CCCceEC-----CCCCEEEEEEeCCCcEEEEEEE
Confidence 5422 11 11111 1222444 9999988887754 344444
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=4.1e-09 Score=109.25 Aligned_cols=184 Identities=11% Similarity=0.070 Sum_probs=113.3
Q ss_pred EEEeCCC--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CC----cEEEEeCCCC---ceeEEeecCC
Q 006808 90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG----MVCEIDPLTG---SLLGKFRAST 159 (630)
Q Consensus 90 ~~~~~~g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg----~v~iwd~~~~---~~~~~~~~~~ 159 (630)
++...+| .|.+.++.+++.. .+. ...+.....+|+|||+.|+..+. +| .+..|++..+ +..+......
T Consensus 203 y~S~~~g~~~I~~~~l~~g~~~-~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 203 YVSYKLGVPKIFLGSLENPAGK-KIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred EEEccCCCceEEEEECCCCCce-Eee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence 3444444 4888899887653 222 23445567899999998776542 22 3444776653 3333333222
Q ss_pred CCeEEEEEccCCCEEEEeC---C--eEEEEECCC-CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g--~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~ 231 (630)
......+|+|||+.|+..+ | .|+++++.. +.....+..+...+....|+|||++|+.++..+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3446789999999888765 4 466666642 233444555556677889999999998876433 3699999988
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec---CCcEEEEEcCCccc
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEE 286 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~ 286 (630)
++.. . +. ..........|+ |||++|+..+. .+.|++||+..++.
T Consensus 361 g~~~---~-Lt--~~~~~~~~p~wS-----pDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 361 GRDY---Q-LT--TSPENKESPSWA-----IDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCeE---E-cc--CCCCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 7643 1 11 111122334455 89998876543 34688888876643
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.9e-08 Score=95.11 Aligned_cols=240 Identities=14% Similarity=0.181 Sum_probs=152.0
Q ss_pred EeEECCCCCEEEEeeC---CCcEEEEECCC--CcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAICSG---DARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~s~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
-++|+|+++.|.++.. +|.|..|.+.. |.+...-. .. ..|+ ..+.++ .+.+
T Consensus 44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~--~~-----------~~g~---~p~yvs---vd~~----- 99 (346)
T COG2706 44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR--QT-----------LPGS---PPCYVS---VDED----- 99 (346)
T ss_pred eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec--cc-----------cCCC---CCeEEE---ECCC-----
Confidence 3499999999988864 57788887764 55432110 00 0011 111222 2222
Q ss_pred CCcEEEEEeCC-CeEEEEEccC-CeeeE--EccCCCCCC----------EEEEEEecCCCEEEEEeC-CCcEEEEeCCCC
Q 006808 85 GSSLLVLGTGG-GDVLALAVSA-GQLKW--RLSDCHPGG----------VSAISFATHGSCIYSAGA-DGMVCEIDPLTG 149 (630)
Q Consensus 85 ~~~~l~~~~~~-g~v~iwd~~~-~~~~~--~~~~~h~~~----------v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~ 149 (630)
+++++++... |.|.++-++. |.... .. ..|.++ +....|.|+++++++++. -..|.+|++..|
T Consensus 100 -g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 100 -GRFVFVANYHSGSVSVYPLQADGSLQPVVQV-VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred -CCEEEEEEccCceEEEEEcccCCccccceee-eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 6777777754 7799999866 33211 11 134444 889999999999988852 336999999977
Q ss_pred ceeEE---eecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCC-ceeeEeec---------CCCCeEEEEEeeCCcE
Q 006808 150 SLLGK---FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSG---------HPGAVRFMTFSDNGKY 213 (630)
Q Consensus 150 ~~~~~---~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~-~~~~~~~~---------h~~~v~~l~~sp~~~~ 213 (630)
+.... .-........|.|+|++++..+.. ++|-+|..... ..+..++. .......|..+|+|++
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF 257 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF 257 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence 64332 112345678999999999988887 89999988773 22222211 1345678899999999
Q ss_pred EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-cEEEEEc
Q 006808 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG 281 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-~i~iwd~ 281 (630)
|.++......|.+|.+...... ..............+...++ ++|++|+++.+++ .|.+|..
T Consensus 258 LYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~-----~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 258 LYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNIN-----PSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeC-----CCCCEEEEEccCCCcEEEEEE
Confidence 9998766668888887664321 01111222233334444454 8999999998854 6888864
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=2.4e-10 Score=120.85 Aligned_cols=192 Identities=11% Similarity=0.150 Sum_probs=147.1
Q ss_pred ECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE
Q 006808 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (630)
+.-+...++.+..++.+.+||...+.....+.... ...-++++.|.... . .-++++|
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e----------------r~~l~~~~~~g~s~-~------~~~i~~g 151 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE----------------RCTLYSSLIIGDSA-E------ELYIASG 151 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCc----------------eEEEEeEEEEeccC-c------EEEEEec
Confidence 33455678888888899999998776655443211 11223333332211 1 5678999
Q ss_pred eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE-EeecCCCCeEEEEEccCC
Q 006808 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDG 171 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~~ 171 (630)
+.-+.|.+|++...+... ...+|.+.|.++.|+-+|.+++++|.|.++++|++.+.+... +.-+|...|..++|.|+
T Consensus 152 sv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred cccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-
Confidence 999999999998444433 446899999999999999999999999999999999987766 55679999999999998
Q ss_pred CEEEEeC--CeEEEEECCCCceeeEeecCCC-CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+++++ -+.++|+. ++..+..+.+|.+ .|..++..++....++++ .|+.+++|++...
T Consensus 230 -~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNGR 290 (967)
T ss_pred -eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhcc
Confidence 788887 79999975 4555667888864 688999988888888887 7999999998654
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=2.4e-10 Score=104.03 Aligned_cols=198 Identities=14% Similarity=0.161 Sum_probs=143.3
Q ss_pred eeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
++++.|++.|..++++-.+|.+.+-+...+.... .++.|........|+.. .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--------------------------~ 177 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--------------------------E 177 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--------------------------C
Confidence 5788999999999999889999865554454443 67777666555444432 1
Q ss_pred CcEEEEEeCCCeEEEEEcc-CCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCC-CCceeEEeecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~-~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v 162 (630)
.+++++|+.||.+..||++ .++.+++-.+-|..+|.+|.-+| .+.++++|+.|-.|++||.+ -++++..-. -.+.|
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGV 256 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGV 256 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccce
Confidence 6789999999999999999 55666665667999999999887 57789999999999999998 466665433 34789
Q ss_pred EEEEEccCC--CEEEEeC-CeEEEEECCCCc-----eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE-EEEcCCC
Q 006808 163 SCMAVSSDG--KMLATAA-GQLKTFNCSDHK-----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA-LWRTDGV 232 (630)
Q Consensus 163 ~~l~~~p~~--~~l~~~~-g~i~lwd~~~~~-----~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~-vwd~~~~ 232 (630)
..+.++|.- ..|+++. +-.+|.+...+. .....+.|.+-+..-.|......|++++..|+.++ +|-.-++
T Consensus 257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 999999943 3444444 556666665442 23345667776777777555567888887888865 7755443
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2.7e-10 Score=112.68 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=140.1
Q ss_pred EECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
+++. ...++..|+. ..|+=+++..|..+..|....+.++.+..++. ..+|+
T Consensus 140 ~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------------------------hgLla 191 (703)
T KOG2321|consen 140 KYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEE---------------------------HGLLA 191 (703)
T ss_pred cccCCCccEEEeecC-cceEEEEccccccccccccccccceeeeecCc---------------------------cceEE
Confidence 4443 3344444443 46777899999998877654444443333322 67899
Q ss_pred EEeCCCeEEEEEccCCeeeEEcc-----CCCCC-----CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLS-----DCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~-----~~h~~-----~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+|+.+|.|..||+++...+..+. ..|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. |..
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~ 270 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGY 270 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCC
Confidence 99999999999999876554432 22333 39999999999899999999999999999988875533 433
Q ss_pred --CeEEEEEccC--CCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 --GISCMAVSSD--GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 --~v~~l~~~p~--~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+|..+.|.+. +..+++.. ..++|||-.+|+....+. .+..+..+++-|++-.++++- .+..+..|=+...
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~An-e~~~m~~yyiP~L 345 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIPSL 345 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEec-CCCcceeEEcccc
Confidence 8999999875 66788888 899999999999887765 455699999999988888776 5666666655443
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=2.3e-09 Score=112.25 Aligned_cols=174 Identities=11% Similarity=0.104 Sum_probs=118.8
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.++|....... .+. .+...+.+.+|+|+|++|+.++.. ..|++||+.+++... +..+...+.+++|+|+|+.
T Consensus 171 ~l~~~d~~g~~~~-~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGANPQ-TIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCCCCE-Eee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4888887654432 333 456678999999999998877643 479999999886543 3334556677999999987
Q ss_pred EEEe-C----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCCccccceeeeeecCC
Q 006808 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~-~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|+.. + ..|++|++.++.. ..+..+........|+|+|++|+.++..++ .|++|++.+++.. .+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~ 320 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFR 320 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecC
Confidence 7654 3 3699999987754 344445555567799999999887664333 5788887765422 11111
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcCCcc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE 285 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~ 285 (630)
........++ |+|.+|+.++.++ .|.+||+.++.
T Consensus 321 ~~~~~~~~~s-----pdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 321 GGYNASPSWS-----PDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCccCeEEC-----CCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 1222333455 8999999888765 78889987653
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=7.7e-09 Score=108.44 Aligned_cols=181 Identities=12% Similarity=0.093 Sum_probs=115.9
Q ss_pred CcEEEEEeCC---CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCC--cEEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~~---g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg--~v~iwd~~~~~~~~~~~~~~ 159 (630)
++.|+..+.. ..|.+|++.+++.. .+. ...+.+....|+|+|+.|+ +.+.+| .|++||+.+++.. .+..+.
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~-~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~ 286 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRRE-QIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP 286 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEE-Ecc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence 5556554433 35999999988754 222 2334556789999999876 444455 6888899887654 344455
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCC
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~ 232 (630)
.......|+|+|+.++..+ ..|+++++.+++... +...........|+|+|++++..+..++ .|.+||+.++
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 5566789999999887665 268888988776432 2212223345789999999988764343 5888898876
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-C--cEEEEEcC
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQ 282 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-g--~i~iwd~~ 282 (630)
... .+. ...... ...|+ |+|++|+..+.+ | .|++++..
T Consensus 366 ~~~----~lt--~~~~~~-~p~~s-----pdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 366 SVR----ILT--DTSLDE-SPSVA-----PNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CEE----Ecc--CCCCCC-CceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence 532 111 111111 22344 999998877653 3 45666653
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=4.2e-09 Score=110.05 Aligned_cols=191 Identities=13% Similarity=0.171 Sum_probs=120.8
Q ss_pred eEeEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 9 ILTSFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
.+.+|||||++|+..+. ++ .|.+||+.+++... +....+. .....|.|.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~------------------~~~~~wSPD--------- 272 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGI------------------NGAPRFSPD--------- 272 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCC------------------cCCeeECCC---------
Confidence 45699999999998764 23 58888998876532 2111111 113455544
Q ss_pred CcEE-EEEeCCCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCC--cEEEEeCCCCceeEEeecCC
Q 006808 86 SSLL-VLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADG--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l-~~~~~~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~ 159 (630)
++.| ++.+.+|. |++||+.+++.. .+. .+.......+|+|||+.|+..+ .++ .|.++|+.+++... +....
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g 349 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG 349 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence 4444 44566665 888898887654 333 3555667889999999876554 334 56777887776543 22222
Q ss_pred CCeEEEEEccCCCEEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCC
Q 006808 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~ 232 (630)
......+|+|+|++|+..+ + .|.++|+.+++.. .+... .......|+|+|+.++.++..++ .+++++....
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2334578999999988765 3 6777898887643 33322 12234589999999888775444 3667776443
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=4.4e-09 Score=110.25 Aligned_cols=175 Identities=12% Similarity=0.058 Sum_probs=117.7
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.++|...+... .+. .+...+....|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~~-~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAV-TLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCce-EEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 3778888765543 332 466789999999999998766533 368999998886543 3333344567899999998
Q ss_pred EEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCCccccceeeeeecCC
Q 006808 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|+... | .|++||+.+++. ..+..+........|+|+|+.++.++..++ .|+++++.+++.. .+ ....
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~l-t~~~- 330 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RV-TFVG- 330 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Ee-ecCC-
Confidence 87543 3 799999988764 345555556677899999998887764333 5777787766532 11 1111
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecC-C--cEEEEEcCCccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQNIEE 286 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~ 286 (630)
.......++ |+|++|+..+.+ | .|.+||+.++..
T Consensus 331 -~~~~~~~~S-----pdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 331 -NYNARPRLS-----ADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred -CCccceEEC-----CCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 112233455 999999887653 3 588889887643
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.3e-08 Score=106.43 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=112.2
Q ss_pred CcEEEEEeC-CC--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCc--EEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVLGTG-GG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGM--VCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~-~g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~--v~iwd~~~~~~~~~~~~~~ 159 (630)
++.|+..+. ++ .|++||+.+++... +. ...+......|+|||+.|+. .+.+|. |++||+.+++.. .+..+.
T Consensus 229 G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~ 305 (448)
T PRK04792 229 GRKLAYVSFENRKAEIFVQDIYTQVREK-VT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR 305 (448)
T ss_pred CCEEEEEEecCCCcEEEEEECCCCCeEE-ec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence 555555443 33 48999998876532 21 12233457899999998764 455664 788898877653 344444
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCC
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~ 232 (630)
......+|+|||+.|+..+ ..|+++|+.+++... +..+.......+|+|+|++++.++..++ .|.++|+.++
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5567889999999887765 368888988776433 3222223345789999999988765444 4566777766
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CC--cEEEEEc
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYG 281 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg--~i~iwd~ 281 (630)
... ...... .. ....|+ |+|++|+..+. +| .+++++.
T Consensus 385 ~~~----~lt~~~--~d-~~ps~s-----pdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 385 AMQ----VLTSTR--LD-ESPSVA-----PNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CeE----EccCCC--CC-CCceEC-----CCCCEEEEEEecCCceEEEEEEC
Confidence 532 111111 11 112344 99998877665 33 3666676
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.6e-08 Score=94.23 Aligned_cols=274 Identities=13% Similarity=0.134 Sum_probs=164.3
Q ss_pred EEEEeCC----CeEEEEEccCCe--eeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCC--Ccee--EEe
Q 006808 89 LVLGTGG----GDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLT--GSLL--GKF 155 (630)
Q Consensus 89 l~~~~~~----g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~--~~~~--~~~ 155 (630)
+++|+.. .-|++|++.+.. .-......+.+.++-++|+|++++|+++.. +|.|..|.+.. |+.. ...
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 4555543 449999987432 211222356778999999999999998864 46677776653 5432 222
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCC-Cceee--EeecCCCC----------eEEEEEeeCCcEEEEEee
Q 006808 156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQ--KFSGHPGA----------VRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~~~--~~~~h~~~----------v~~l~~sp~~~~l~~~~~ 219 (630)
.....+.+.++++++|++++++. |.|.++-++. |.+.. ....|.+. +....|.|++++|++..-
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 33344558899999999999997 8999999865 43211 12234444 788899999999999876
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCc-ccccccCce----
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI-EELRNTKAT---- 293 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~-~~~~~~~~~---- 293 (630)
.-..|.+|++..++......... .++.-.+-+.|. |++++....++ +++|-+|..... ..+...+..
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFH-----PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred CCceEEEEEcccCcccccccccc--CCCCCcceEEEc-----CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 66689999999776542222111 334444556676 99999988887 899999997763 111211110
Q ss_pred ----eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEc-Ccc---CceeeEEeccCCCcEEEeecCCcceee
Q 006808 294 ----KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG-LLL---KPSFQKILVNSGEDINLNCSQDGVLLP 365 (630)
Q Consensus 294 ----~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g-~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (630)
....+..+..+++++ .++++.. +. + .+.++. ... ...++....+-..=..+.|.+.|++|.
T Consensus 238 ~dF~g~~~~aaIhis~dGr----FLYasNR-g~----d--sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGR----FLYASNR-GH----D--SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred cccCCCCceeEEEECCCCC----EEEEecC-CC----C--eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 111122222455554 4444332 10 1 111111 111 111111111222246788999999995
Q ss_pred ccccceeccccceec
Q 006808 366 MSQSLLKSKRGRYVQ 380 (630)
Q Consensus 366 ~s~s~d~~~~~w~~~ 380 (630)
+++-...++.+..+.
T Consensus 307 aa~q~sd~i~vf~~d 321 (346)
T COG2706 307 AANQKSDNITVFERD 321 (346)
T ss_pred EEccCCCcEEEEEEc
Confidence 555555667776664
No 254
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=8e-09 Score=102.03 Aligned_cols=307 Identities=11% Similarity=0.067 Sum_probs=182.3
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..+.|||-|+||++-..-| |.+|--.+...++.|.. ..+.-+.|||. ..+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~---------------------------EkY 263 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPN---------------------------EKY 263 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCc---------------------------cce
Confidence 4569999999999998754 78997655555554431 11222233333 444
Q ss_pred EEEEeC----------C-CeEEEEEccCCeeeEEccC--CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 89 LVLGTG----------G-GDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 89 l~~~~~----------~-g~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
|++-+. + ..++|||+.+|.....+.. .....-.-+.||.|+++++.-..+ .|.||+..+..++..-
T Consensus 264 LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~K 342 (698)
T KOG2314|consen 264 LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKK 342 (698)
T ss_pred EEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccc
Confidence 444332 2 3599999999988766542 222223457899999999877665 5889987764443322
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC--------
Q 006808 156 RASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-------- 220 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~-------- 220 (630)
...-..|....|+|.+..||.=. ..+.+..+.+++.+++-.-|.-.=..+.|-.+|.||+.--..
T Consensus 343 slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 343 SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccc
Confidence 22345788899999998888644 478888888888887766555444456788888888763310
Q ss_pred -CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec---CCcEEEEEcCC-cc---cccccCc
Q 006808 221 -ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN-IE---ELRNTKA 292 (630)
Q Consensus 221 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~-~~---~~~~~~~ 292 (630)
-..+.|+.++..... +....-...++...|= |.|..+++.+. ..++.+|...+ .. .+.....
T Consensus 423 ~f~n~eIfrireKdIp----ve~velke~vi~FaWE------P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk 492 (698)
T KOG2314|consen 423 QFSNLEIFRIREKDIP----VEVVELKESVIAFAWE------PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK 492 (698)
T ss_pred eEeeEEEEEeeccCCC----ceeeecchheeeeeec------cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc
Confidence 113556666654432 3334444455554443 78877666544 34788998763 21 1222211
Q ss_pred eeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeecccc
Q 006808 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (630)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s 369 (630)
..+-...++|.|+ .++.+..-+ ..|.+-..+... .....+...-+..-..+-|.|.|+|+ +++|
T Consensus 493 ---~~~N~vfwsPkG~----fvvva~l~s----~~g~l~F~D~~~-a~~k~~~~~eh~~at~veWDPtGRYv-vT~s 556 (698)
T KOG2314|consen 493 ---KFANTVFWSPKGR----FVVVAALVS----RRGDLEFYDTDY-ADLKDTASPEHFAATEVEWDPTGRYV-VTSS 556 (698)
T ss_pred ---cccceEEEcCCCc----EEEEEEecc----cccceEEEecch-hhhhhccCccccccccceECCCCCEE-EEee
Confidence 1122233688887 666666543 123333333221 11111111223445778899999999 7666
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=1.9e-10 Score=127.22 Aligned_cols=183 Identities=19% Similarity=0.297 Sum_probs=137.7
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
+.=+|...+.+||+.||.|++|.+..++.+..++... . ..++.+.++.. |+.+.
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g---------------~--s~vtr~~f~~q---------Gnk~~ 2267 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG---------------N--SRVTRSRFNHQ---------GNKFG 2267 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC---------------c--chhhhhhhccc---------CCcee
Confidence 3567778899999999999999999999888776322 1 23334444333 66789
Q ss_pred EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe---CCCcEEEEeCCCC-ceeEEeecCCCCeEEEE
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTG-SLLGKFRASTKGISCMA 166 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~ 166 (630)
++..||.+.+|.... +.. .-.+.|.....++.|-. ..+++++ .++.+.+||..-. .....-..|.+.+++++
T Consensus 2268 i~d~dg~l~l~q~~p-k~~-~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP-KPY-TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred eeccCCceeecccCC-cce-eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence 999999999999872 222 33357888999999965 5566664 6789999996422 21112277899999999
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
+.|....|++|+ |.|++||++..+.+.+++. +. ...+|++++ ..|.|+||++.....
T Consensus 2344 ~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2344 YAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNIKIWRLSEFGL 2402 (2439)
T ss_pred EcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccceEEEEccccch
Confidence 999999999999 9999999998887766653 33 456777777 599999999988653
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=1.7e-10 Score=117.06 Aligned_cols=203 Identities=12% Similarity=0.153 Sum_probs=139.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++.++ ..+|.|+-+|.++.-| +.+-|+.... ...-+. | .....+....|.+...
T Consensus 25 ~~~~a~--si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h----------------~tpw~vad~qws~h~a---- 80 (1081)
T KOG0309|consen 25 GGFNAV--SINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-H----------------ITPWQVADVQWSPHPA---- 80 (1081)
T ss_pred Ccccce--eeccccchhhhhhhcC-eEEEeccCCCCCceeee-c----------------cCcchhcceecccCCC----
Confidence 455444 8889998888888755 4455654322 111111 0 1123344566665543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC--eeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCC-ceeEEeecC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRAS 158 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~~ 158 (630)
..+-++.+....-.+|++... ..+--+..+|+..|+++.|+|+.. .+++++.|-.+..||+++. .++..+...
T Consensus 81 ---~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 81 ---KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred ---CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 334455566666778887543 334344568999999999999654 5889999999999999976 455566655
Q ss_pred CCCeEEEEEcc-CCCEEEEeC-CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCcc
Q 006808 159 TKGISCMAVSS-DGKMLATAA-GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 159 ~~~v~~l~~~p-~~~~l~~~~-g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
......++|+. ++..+|+.. +.|++||.+.|. ++..+++|...|..+.|..-- ..+.+++ .|++++.|+......
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKFWDYSKSTT 236 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceeeeccccccc
Confidence 56678899987 455555555 699999998865 678889999999999987532 3455655 699999999877543
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.15 E-value=3.6e-08 Score=96.71 Aligned_cols=330 Identities=12% Similarity=0.049 Sum_probs=183.2
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
|+ ..++|||.|.+|++.... .|.+|....+..+..+.. ..+....|+|. +. --..|....-..
T Consensus 34 p~--~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~---~k-----YL~tw~~~pi~~---- 96 (561)
T COG5354 34 PV--AYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH--PDVKYLDFSPN---EK-----YLVTWSREPIIE---- 96 (561)
T ss_pred ch--hheeecCcchheehhhcc-ceEEccccchhheeeeec--CCceecccCcc---cc-----eeeeeccCCccC----
Confidence 55 445999999999988764 589998877665554432 22333444443 10 011121110000
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC--EE-EEEEecCCCEEEEEeCCCcEEEEeCCCCcee-EEeecC-C
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG--VS-AISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRAS-T 159 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~--v~-~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~-~ 159 (630)
...-+.=-+....+++||+.+|..+..+.. ...+ .. -+.|+.+.++++-. ....++++++ ++... ..+... .
T Consensus 97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~-~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 97 PEIEISPFTSKNNVFVWDIASGMIVFSFNG-ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred hhhccCCccccCceeEEeccCceeEeeccc-cCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence 000000011223599999999999877753 2223 33 67888887775544 2345889997 33321 122222 2
Q ss_pred CCeEEEEEccCC--CEEEEeC-------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee----------C
Q 006808 160 KGISCMAVSSDG--KMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV----------G 220 (630)
Q Consensus 160 ~~v~~l~~~p~~--~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~----------~ 220 (630)
..+....|+|.| ..|+.=. +++++|.+..+..+.+-.-....-..+.|.+.|.++++-.. +
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 467888899953 3444322 68999999877766553323333356788898888766331 1
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcCCcccccccCc-eeEEe
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKA-TKILS 297 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~-~~~~~ 297 (630)
...++++++...... +. ....+ .+.-.+|. |.++.+++++ ..-.+.++|++.. ....... .+...
T Consensus 254 esnLyl~~~~e~~i~----V~-~~~~~-pVhdf~W~-----p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~ 321 (561)
T COG5354 254 ESNLYLLRITERSIP----VE-KDLKD-PVHDFTWE-----PLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTI 321 (561)
T ss_pred cceEEEEeecccccc----ee-ccccc-cceeeeec-----ccCCceeEEecccccceeecccccc-eEEecCCcccccc
Confidence 346788888744322 11 12223 33444554 7776665554 5778899998655 2222222 22222
Q ss_pred eccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccc------cce
Q 006808 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ------SLL 371 (630)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~------s~d 371 (630)
.|+|..+ +|+.+++++. .|.+.+..-.....++..+.+. .-.-+.|||||.++ .+. -.|
T Consensus 322 ----~fsp~~r----~il~agF~nl----~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~-~~~~ts~k~~~D 386 (561)
T COG5354 322 ----FFSPHER----YILFAGFDNL----QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY-DTDTTSEKLRVD 386 (561)
T ss_pred ----cccCccc----EEEEecCCcc----ccceEEeccCCceEEEEEeecC--CceEeeccCCceEE-EecCCCcccccC
Confidence 3788888 9999988763 2333332211111111122121 22456799999987 332 237
Q ss_pred eccccceecc
Q 006808 372 KSKRGRYVQN 381 (630)
Q Consensus 372 ~~~~~w~~~~ 381 (630)
..+++|++..
T Consensus 387 n~i~l~~v~g 396 (561)
T COG5354 387 NSIKLWDVYG 396 (561)
T ss_pred cceEEEEecC
Confidence 8899999853
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.2e-08 Score=105.73 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=118.7
Q ss_pred eEeEECCCCCE--EEEee-CC--CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDY--FAICS-GD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~--las~s-~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++-+|||||+. ++..+ .+ ..|.+.++.+|+... +....+.... ..|.|.
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~------------------p~wSPD------- 241 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLM------------------PTFSPR------- 241 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccc------------------eEECCC-------
Confidence 55589999975 33233 33 357777888776432 2212222222 344443
Q ss_pred cCCcEEEEEe-CCC--eE--EEEEccCC--eeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEE--eCCC-Ccee
Q 006808 84 LGSSLLVLGT-GGG--DV--LALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEI--DPLT-GSLL 152 (630)
Q Consensus 84 ~~~~~l~~~~-~~g--~v--~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iw--d~~~-~~~~ 152 (630)
++.|+..+ ..| .+ .+|++..+ .....+..++.+.....+|+|||+.|+..+ .+|...+| ++.. +...
T Consensus 242 --G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 242 --KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred --CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 54455444 333 34 34676653 122233323333456789999999877654 46655555 4432 2334
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC--CCeEE
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIA 225 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~--d~~i~ 225 (630)
..+..+...+....|+|||+.|+..+ ..|++||+.+++.. .+......+....|+|||++|+..+.. ...|+
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 44544445677899999999988764 37999999888754 343334456788999999988865532 34688
Q ss_pred EEEcCCCc
Q 006808 226 LWRTDGVK 233 (630)
Q Consensus 226 vwd~~~~~ 233 (630)
+|++..++
T Consensus 399 ~vdl~~g~ 406 (428)
T PRK01029 399 LISLITKK 406 (428)
T ss_pred EEECCCCC
Confidence 88987765
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.12 E-value=1.8e-08 Score=98.71 Aligned_cols=307 Identities=13% Similarity=0.149 Sum_probs=185.2
Q ss_pred ccceeEeEECCCCCEEEEeeCCC---------------cEEEEECCCCcEEEEeccccccccccccccccccccccccee
Q 006808 5 NIRDILTSFSPALDYFAICSGDA---------------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYT 69 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 69 (630)
.|+.+ .|||+|+||.+=+..+ .+.|||+.+|..+..+.....+ -....
T Consensus 73 ~V~~~--~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---------------~~~Wp 135 (561)
T COG5354 73 DVKYL--DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---------------YLGWP 135 (561)
T ss_pred Cceec--ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---------------ccccc
Confidence 45555 8999999999876444 4899999999999887654322 00122
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEE-ccCCCCCCEEEEEEecCCCE--EEE-----EeCCCcE
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSC--IYS-----AGADGMV 141 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~g~~--l~s-----~~~dg~v 141 (630)
.+.|...+. + ++--....+.|+++ ++..... +..-....|..+.|+|.|+. |+. .+..+.+
T Consensus 136 ~~k~s~~D~---------y-~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~ 204 (561)
T COG5354 136 VLKFSIDDK---------Y-VARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMV 204 (561)
T ss_pred eeeeeecch---------h-hhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence 334443321 1 22123456899997 4433211 11111356899999996543 333 3577899
Q ss_pred EEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-------------CeEEEEECCCCceeeEeecCCCCeEEEEEe
Q 006808 142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208 (630)
Q Consensus 142 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s 208 (630)
++|.+..+..+.+-.-....=..+.|++.|+++++-- .+++++++.... +.....-.++|...+|.
T Consensus 205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~ 283 (561)
T COG5354 205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWE 283 (561)
T ss_pred EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeec
Confidence 9999987776655333233335788999998876531 378888887443 33333568899999999
Q ss_pred eCCcEEEEEe-eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC---CcEEEEEcCCc
Q 006808 209 DNGKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNI 284 (630)
Q Consensus 209 p~~~~l~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~ 284 (630)
|.++.|++.+ ..+-.+.++|++..- .+.+ +...-....|+ |.+++++.++.+ |.+.+||....
T Consensus 284 p~S~~F~vi~g~~pa~~s~~~lr~Nl------~~~~--Pe~~rNT~~fs-----p~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 284 PLSSRFAVISGYMPASVSVFDLRGNL------RFYF--PEQKRNTIFFS-----PHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccCCceeEEecccccceeecccccce------EEec--CCccccccccc-----CcccEEEEecCCccccceEEeccCCc
Confidence 9998777765 567789999988752 1121 22222334455 899999987764 68999997554
Q ss_pred cccc-ccCceeEEeeccCCCcccccchhhhhhhccccccccCCc-eeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc
Q 006808 285 EELR-NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS-VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV 362 (630)
Q Consensus 285 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (630)
-.+. .........+ -++|++. .+.++......+..+ ..++..+|... ++.+.+.|.|.|+
T Consensus 351 f~~~~~~~~~n~s~~---~wspd~q----F~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------fel~~~~W~p~~~ 412 (561)
T COG5354 351 FKVAGAFNGLNTSYC---DWSPDGQ----FYDTDTTSEKLRVDNSIKLWDVYGAKV-----------FELTNITWDPSGQ 412 (561)
T ss_pred eEEEEEeecCCceEe---eccCCce----EEEecCCCcccccCcceEEEEecCchh-----------hhhhhccccCCcc
Confidence 3333 2322222222 2566665 444333322222211 23444554322 2567888999999
Q ss_pred eeecccccee
Q 006808 363 LLPMSQSLLK 372 (630)
Q Consensus 363 ~l~~s~s~d~ 372 (630)
+. .+.|.+.
T Consensus 413 ~~-ttsSs~~ 421 (561)
T COG5354 413 YV-TTSSSCP 421 (561)
T ss_pred cc-eeeccCC
Confidence 87 5555444
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=2.4e-07 Score=91.41 Aligned_cols=224 Identities=13% Similarity=0.106 Sum_probs=147.5
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC----------CC
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG----------GG 96 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~----------~g 96 (630)
++|.|.|..+++.+..+.....+.. . ++++ ++.++++.. ++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spD---------------------------g~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASD---------------------------GSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCC---------------------------CCEEEEEeccccccccCCCCC
Confidence 8999999999999888764322221 1 3333 555666655 67
Q ss_pred eEEEEEccCCeeeEEccCCCC------CCEEEEEEecCCCEEEEEe-C-CCcEEEEeCCCCceeEEeecCCC--------
Q 006808 97 DVLALAVSAGQLKWRLSDCHP------GGVSAISFATHGSCIYSAG-A-DGMVCEIDPLTGSLLGKFRASTK-------- 160 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~------~~v~~~~~s~~g~~l~s~~-~-dg~v~iwd~~~~~~~~~~~~~~~-------- 160 (630)
.|.+||+.+.+.+.++..+-. .....++++|||++++... . +..|.+.|+.+++.+..+.....
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e 157 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN 157 (352)
T ss_pred EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence 799999999998877753211 2244889999999998776 3 68999999998876654431110
Q ss_pred -----------------------CeEEE--------------EEcc-CCCEEEEeC-CeEEEEECCCC-----ceeeEee
Q 006808 161 -----------------------GISCM--------------AVSS-DGKMLATAA-GQLKTFNCSDH-----KKMQKFS 196 (630)
Q Consensus 161 -----------------------~v~~l--------------~~~p-~~~~l~~~~-g~i~lwd~~~~-----~~~~~~~ 196 (630)
.+... .|.+ +|+++.+.. |+|++.|+... .....+.
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~ 237 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFT 237 (352)
T ss_pred CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecc
Confidence 01111 1223 777777666 99999996433 2222221
Q ss_pred c-------CCCCeEEEEEeeCCcEEEEEee---------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCcc
Q 006808 197 G-------HPGAVRFMTFSDNGKYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV 260 (630)
Q Consensus 197 ~-------h~~~v~~l~~sp~~~~l~~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (630)
. ..+.+.-++++|+++++++... ..+.|.++|..+.+.. .....++ ....+.++
T Consensus 238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi---~~i~vG~---~~~~iavS---- 307 (352)
T TIGR02658 238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL---RKIELGH---EIDSINVS---- 307 (352)
T ss_pred ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE---EEEeCCC---ceeeEEEC----
Confidence 1 2334455999999998887431 1257999999888744 2222232 23334455
Q ss_pred CCCCC-EEEEEe-cCCcEEEEEcCCccccccc
Q 006808 261 DDAGL-YVLAIS-ETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 261 ~~~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~ 290 (630)
||++ +|++.+ .++.|.++|..+++.++..
T Consensus 308 -~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 308 -QDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -CCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999 887776 5788999999999887765
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=2.3e-09 Score=113.60 Aligned_cols=185 Identities=13% Similarity=0.136 Sum_probs=141.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC---EEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~---v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
...+++++.+..+.+||...+.....+....... ..-+.++++.-++++|+.-+.|.+|+....+.-..+.+|.+.+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 5678999999999999999887765553222211 2223345566679999999999999987333333588999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.++.|+-+|+++++.+ .++++|++.+.+... +.-+|+..|..+.|.|+ .+++++ .|.+.++|+.......
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g-edctcrvW~~~~~~l~---- 251 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG-EDCTCRVWGVNGTQLE---- 251 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec-cceEEEEEecccceeh----
Confidence 9999999999999999 899999999988665 66789999999999998 788887 7999999976554422
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
. ..+|...-+.....+ ++...++|++.||.+++|++..
T Consensus 252 ~-y~~h~g~~iw~~~~~-----~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 252 V-YDEHSGKGIWKIAVP-----IGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred h-hhhhhhcceeEEEEc-----CCceEEEeeccCcchhhhhhhc
Confidence 1 223444444444554 6778889999999999999754
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.1e-08 Score=99.62 Aligned_cols=299 Identities=14% Similarity=0.137 Sum_probs=176.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
...+||++|++||.+.. ..++|++..++..+.+.... ....+.|+|. +.. -..|-+..
T Consensus 38 ~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~---g~y-----L~T~e~~~----------- 95 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELK--KTYDLLFSPK---GNY-----LLTWEPWA----------- 95 (566)
T ss_pred eeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccc--eeeeeeeccc---ccc-----cccccccc-----------
Confidence 34599999999998764 68999999888644443322 3444555554 111 01121111
Q ss_pred EEEEeC---CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 89 LVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 89 l~~~~~---~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+.+.. .-.+.+|++.++.....+....... ++..|++|..+.+ --..+.+.+|++...+.+.. +-|...|+.+
T Consensus 96 -i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f 171 (566)
T KOG2315|consen 96 -IYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITML 171 (566)
T ss_pred -cccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhh-hhhcceEEEEecCCccceee-eeeccceeeE
Confidence 11111 2348899999966554444333333 6788888765422 22345678887765332211 1123344444
Q ss_pred EEccCC--CEEEEe-----C--CeEEE-----------------------------------------------------
Q 006808 166 AVSSDG--KMLATA-----A--GQLKT----------------------------------------------------- 183 (630)
Q Consensus 166 ~~~p~~--~~l~~~-----~--g~i~l----------------------------------------------------- 183 (630)
.++|.+ ..+|+- + +.|+|
T Consensus 172 ~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq 251 (566)
T KOG2315|consen 172 SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQ 251 (566)
T ss_pred EecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccc
Confidence 444431 122221 0 24444
Q ss_pred ----EECCCCceeeEeecCCCCeEEEEEeeCCcEEEEE-eeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCC
Q 006808 184 ----FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS-AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (630)
Q Consensus 184 ----wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (630)
+++....+...+. ..++|.++.|+|+++-|+++ |..--.+.|+|++..- ++.+ +...-..+.|+
T Consensus 252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------v~df--~egpRN~~~fn-- 320 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------VFDF--PEGPRNTAFFN-- 320 (566)
T ss_pred eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE------eEeC--CCCCccceEEC--
Confidence 4433212221221 36899999999999876654 3335678999987642 3333 33334566676
Q ss_pred ccCCCCCEEEEEec---CCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCcee-EEEEE
Q 006808 259 GVDDAGLYVLAISE---TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH-TFVAY 334 (630)
Q Consensus 259 ~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~~ 334 (630)
|.|++|+.++. -|.|.|||..+.+.+.........++. ++|++. +++++.-....++.+|- +|..+
T Consensus 321 ---p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~e---W~PdGe----~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 321 ---PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFE---WSPDGE----YFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ---CCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEE---EcCCCc----EEEEEeccccEEecCCeEEEEec
Confidence 99999988876 578999999998888777666555443 789998 99999888777776664 66666
Q ss_pred cCccCceeeEEeccCC-CcEEEeecCC
Q 006808 335 GLLLKPSFQKILVNSG-EDINLNCSQD 360 (630)
Q Consensus 335 g~~~~~~~~~~~~h~~-~v~~~~~s~d 360 (630)
|..... -+.. +.+.+.|-|-
T Consensus 391 G~~l~~------~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 391 GSLLHE------KMFKSELLQVEWRPF 411 (566)
T ss_pred Cceeeh------hhhhHhHhheeeeec
Confidence 655431 1111 5677777753
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.09 E-value=1.2e-07 Score=93.59 Aligned_cols=263 Identities=14% Similarity=0.060 Sum_probs=148.5
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCceeEEeecCCC-----
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----------DGMVCEIDPLTGSLLGKFRASTK----- 160 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~----- 160 (630)
++|.+.|..+++.+..+..+.... .+ ++|||+.++.+.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 889999999999987776554433 34 9999999877655 78999999999999988774322
Q ss_pred --CeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 --~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
....++++|||+++++.. +.|.++|+.+++.+.++.-.. ...-.. .++..+++.| .|+......+.....
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~-t~e~~~~~~~--~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP-TANDTFFMHC--RDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE-ecCCccEEEe--ecCceEEEEecCCCc
Confidence 234789999999999776 799999999999988876422 111112 2222233222 255444433332211
Q ss_pred ccceeeeeecC--CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc-----ccccc---------CceeEEee
Q 006808 235 QSASCVLAMEH--PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-----ELRNT---------KATKILSS 298 (630)
Q Consensus 235 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~---------~~~~~~~~ 298 (630)
........+.. ...+..-..+. .+|.++.+... |.|++.|+.... .+... .+..+..
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~-----~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~- 252 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSN-----KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ- 252 (352)
T ss_pred eEEeeeeeecCCccccccCCceEc-----CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee-
Confidence 10001111111 00001111121 37888777766 999999953322 11111 1111111
Q ss_pred ccCCCcccccchhhhhhhccccc---cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc-eeeccccceecc
Q 006808 299 SEDVNSKSQKSATAAIFAAKLQD---IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSK 374 (630)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~ 374 (630)
..+.++++ .++.+...+ +-+.....+++.+. ........+.. ...++.+++||||+ +|.++...++.+
T Consensus 253 --ia~~~dg~----~lyV~~~~~~~~thk~~~~~V~ViD~-~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 253 --VAYHRARD----RIYLLADQRAKWTHKTASRFLFVVDA-KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred --EEEcCCCC----EEEEEecCCccccccCCCCEEEEEEC-CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 12455555 444422111 11111234555553 22333333322 34789999999999 774455556777
Q ss_pred ccceec
Q 006808 375 RGRYVQ 380 (630)
Q Consensus 375 ~~w~~~ 380 (630)
.+.+..
T Consensus 325 sViD~~ 330 (352)
T TIGR02658 325 YIFDAE 330 (352)
T ss_pred EEEECc
Confidence 776664
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.09 E-value=6.6e-08 Score=99.58 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=141.1
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
.+..+++++.+|.|..+|..+|+.+..+........ +| . . .+..+++++.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~p-------------~----v--------~~~~v~v~~~~ 114 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG----GV-------------G----A--------DGGLVFVGTEK 114 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc----ce-------------E----E--------cCCEEEEEcCC
Confidence 466788888899999999999998876653221000 00 0 0 15668889999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE-----EEEEccC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-----CMAVSSD 170 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-----~l~~~p~ 170 (630)
|.+..+|..+|+.+++.... ..+.+.-.. .+..++.++.++.+..||..+|+.+..+......+. +..+. +
T Consensus 115 g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~ 190 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D 190 (377)
T ss_pred CEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C
Confidence 99999999999998776432 223221111 345777788899999999999998777654332111 11111 3
Q ss_pred CCEEEEeC--CeEEEEECCCCceeeEeecCC--C--C------e-EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHP--G--A------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 171 ~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~--~--~------v-~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+ .++.+. +.+..+|..+|+.+.+..... + . + ....+ .+..+++++ .++.++.||..+++..
T Consensus 191 ~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~~-- 264 (377)
T TIGR03300 191 G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRVL-- 264 (377)
T ss_pred C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcEE--
Confidence 3 445544 899999999998765432110 0 0 0 11112 244666666 5899999999888643
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.... ... . .... ..+..+++++.+|.++.+|..+|+.+-..
T Consensus 265 -W~~~--~~~-~-~~p~-------~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 265 -WKRD--ASS-Y-QGPA-------VDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred -Eeec--cCC-c-cCce-------EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 1111 111 0 0111 24677888889999999999999876544
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1.7e-07 Score=107.12 Aligned_cols=249 Identities=10% Similarity=0.066 Sum_probs=147.3
Q ss_pred eEECCC-CCEEEEeeCCCcEEEEECCCCcEEEEecccc--cccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 11 TSFSPA-LDYFAICSGDARIKIWDTLKGQVQTEFADIA--STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 11 ~~fs~d-g~~las~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
++++++ |.++++-+..++|++||.. |..+..+.+.. +.... .+. ..... ....+++.+. ++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG-~~~----~a~f~-~P~GIavd~~---------gn 636 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDG-SFE----DATFN-RPQGLAYNAK---------KN 636 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCC-chh----ccccC-CCcEEEEeCC---------CC
Confidence 378875 5566666778899999975 55544443210 00000 000 00000 1123344332 44
Q ss_pred EEEEEeC-CCeEEEEEccCCeeeEEccC-CC---------------CCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 006808 88 LLVLGTG-GGDVLALAVSAGQLKWRLSD-CH---------------PGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 88 ~l~~~~~-~g~v~iwd~~~~~~~~~~~~-~h---------------~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
.|+++.. ++.|+++|+.++... ++.. +. -....+++|+| ++..+++.+.++.|++||..++
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 4555554 566999998876542 2210 00 12346899999 4555666677889999998776
Q ss_pred ceeEEeecC---------------CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeec-------------C
Q 006808 150 SLLGKFRAS---------------TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG-------------H 198 (630)
Q Consensus 150 ~~~~~~~~~---------------~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~-------------h 198 (630)
... .+.+. -.....++++|++..|+++. +.|++||+.++.......+ +
T Consensus 716 ~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 716 VTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred eEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 542 22211 12346799999998666654 7999999987653211100 0
Q ss_pred --------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC-----------CceeeeeEEecCCc
Q 006808 199 --------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-----------PAVFMDCRCIDNGG 259 (630)
Q Consensus 199 --------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 259 (630)
-....+++|+++|..+++-. .++.|++||..++... .+...+. .-.....++++
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~---tiaG~G~~G~~dG~~~~a~l~~P~GIavd--- 867 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVT---TLAGTGKAGFKDGKALKAQLSEPAGLALG--- 867 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEE---EEeccCCcCCCCCcccccccCCceEEEEe---
Confidence 01235889999998665554 6899999999876532 1111000 00122334554
Q ss_pred cCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 260 VDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
++|+.+++-+.++.|++||+.++..
T Consensus 868 --~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 868 --ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred --CCCCEEEEECCCCEEEEEECCCCcc
Confidence 8899888888899999999988754
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.05 E-value=5.5e-08 Score=88.97 Aligned_cols=261 Identities=11% Similarity=0.058 Sum_probs=160.5
Q ss_pred CCeEEEEEccCCeeeE--EccCCCCCCEEEEEEec---CCC-EEEEEeCCCcEEEEeCCCCceeEEeecCCC------Ce
Q 006808 95 GGDVLALAVSAGQLKW--RLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK------GI 162 (630)
Q Consensus 95 ~g~v~iwd~~~~~~~~--~~~~~h~~~v~~~~~s~---~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~v 162 (630)
.|.+.+|++...+... .+.....+.+..+.|.- +|. .++-+...|.|.++..........+++-.. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4667888877655432 22222345677787764 444 356677788899887654443334433221 23
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
.++.|++.+..++++. |.+.+-+...... +++++.|..++..+.|+....-++.+|++|+.+..||++..+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---- 200 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---- 200 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc----
Confidence 5788899888888876 7887666555443 3478899999999999876554544455899999999995442
Q ss_pred eeee--ecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC-cccccccCcee--EEeeccCCCcccccchhhh
Q 006808 239 CVLA--MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTKATK--ILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 239 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 313 (630)
+++. .-|...++.+...+ |.+.+|++|+.|-.|++||.++ ++++...+... +.+. ..|... ..
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~-----~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~----~~p~~~---~~ 268 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSP-----PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIK----HHPEIF---HR 268 (339)
T ss_pred eeeecceeeecceEEEecCC-----CCCceEEEeccccceeeeehhcccCccccCccccceEEEE----ecchhh---hH
Confidence 2332 33556666666665 7889999999999999999884 55655444332 3332 122211 25
Q ss_pred hhhccccccccCCcee-EEEEEcCc--cCceeeEEeccCCCcEEEeecCCcceeecccc-ceeccc-cce
Q 006808 314 IFAAKLQDIVKPASVH-TFVAYGLL--LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS-LLKSKR-GRY 378 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~-~~~~~g~~--~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s-~d~~~~-~w~ 378 (630)
+++++.-+ |- +....... ....+...+.|.+-.+.-.|..-..+| +|+| .|+.++ +|-
T Consensus 269 lL~~CMh~------G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~l-ATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 269 LLAACMHN------GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFL-ATCSFYDKKIRQLWL 331 (339)
T ss_pred HHHHHHhc------CceEEEecccccchheeeeccccccceeecccccccccee-eeeeccccceeeeee
Confidence 55655532 22 22221111 223555666787777777774444456 6665 466655 664
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=8e-09 Score=94.87 Aligned_cols=249 Identities=17% Similarity=0.220 Sum_probs=158.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCc-----EEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.++.|...|.|||+|...|+|.+|.-.... ...+|++|..... |. ........+..+.|+.+..
T Consensus 30 taVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---YL---kSleieEKin~I~w~~~t~----- 98 (460)
T COG5170 30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---YL---KSLEIEEKINAIEWFDDTG----- 98 (460)
T ss_pred eEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---hh---hhccHHHHhhheeeecCCC-----
Confidence 344899999999999999999999765432 2234454432211 10 0112234677888987764
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCee-------------------------------------e----EE-ccCCCCCCEE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQL-------------------------------------K----WR-LSDCHPGGVS 121 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~-------------------------------------~----~~-~~~~h~~~v~ 121 (630)
...+++.+.+.+|++|.+..... + .+ ....|..-|.
T Consensus 99 --r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 99 --RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred --cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 45678888999999998754310 0 01 1145777899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCc---eeEEeecCC-----CCeEEEEEccCC--CEEEEeC-CeEEEEECCCCc
Q 006808 122 AISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST-----KGISCMAVSSDG--KMLATAA-GQLKTFNCSDHK 190 (630)
Q Consensus 122 ~~~~s~~g~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~-----~~v~~l~~~p~~--~~l~~~~-g~i~lwd~~~~~ 190 (630)
++.|+.|...++++ .|-.|.+|++.... .+.-++.|. .-|++..|+|.. .++.+.+ |.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999998888877 67789999986432 222334443 357888999953 3445555 999999998432
Q ss_pred e------ee----------EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC--------
Q 006808 191 K------MQ----------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------- 246 (630)
Q Consensus 191 ~------~~----------~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------- 246 (630)
. +. -|.+-...|..+.|+++|+|+++-. =-++++||.+..+.. +.+.+-+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~p----ikTi~~h~~l~~~l~ 329 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNP----IKTIPMHCDLMDELN 329 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCC----ceeechHHHHHHHHH
Confidence 1 10 1112235688899999999998754 358999999887643 3333111
Q ss_pred -----ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 247 -----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 247 -----~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
..+..-.-. .|+.|...+++|+..+..-||-
T Consensus 330 d~YEnDaifdkFei---sfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 330 DVYENDAIFDKFEI---SFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhhhccceeeeEEE---EecCCcccccccccccceeeec
Confidence 111111111 1236778888988887777765
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=1.9e-09 Score=119.62 Aligned_cols=180 Identities=15% Similarity=0.201 Sum_probs=143.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
..+.++|+.||.|++|....++.+..+..+-.+.|+.+.|+.+|+.+..+..||.+.+|... .++...++.|....+..
T Consensus 2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce
Confidence 44678999999999999988887655554445899999999999999999999999999976 67777788898888888
Q ss_pred EEccCCCEEEEeC-----CeEEEEECCCCc---eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 166 AVSSDGKMLATAA-----GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 166 ~~~p~~~~l~~~~-----g~i~lwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
.|-. ..+++++ +.+.+||..-.. .+. +.|.+.++++++.|..+.|++|| .+|.|++||++..+..
T Consensus 2299 ~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~-- 2371 (2439)
T KOG1064|consen 2299 RFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLR-- 2371 (2439)
T ss_pred eeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHH--
Confidence 8875 5667665 699999964321 232 78999999999999999999988 7999999999987644
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..+. . + ....++++|+..|.++||++.....+.+.+
T Consensus 2372 -h~~~--~---------~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 -HTFQ--A---------L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -HHhh--h---------h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence 1111 1 1 134789999999999999998776665543
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=1.4e-08 Score=94.73 Aligned_cols=248 Identities=13% Similarity=0.095 Sum_probs=150.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCee----eEEccCCCC------------CCEEEEEEecCCC--EEEEEeCCCcEEEEeCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL 147 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~----~~~~~~~h~------------~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~ 147 (630)
|.+|++|..+|.|.+|.-..... ..+..+.|. ..|..+.|.++++ .++..+.|.+|++|-+.
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~ 116 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR 116 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence 88999999999999986543221 222223343 3588999988665 47788899999999875
Q ss_pred CCce-----------------------------------eEEe-ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCc
Q 006808 148 TGSL-----------------------------------LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (630)
Q Consensus 148 ~~~~-----------------------------------~~~~-~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~ 190 (630)
.... .+.+ .+|.-.|.++.++.|+..++++. =.|.+|++.-..
T Consensus 117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d 196 (433)
T KOG1354|consen 117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID 196 (433)
T ss_pred ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccC
Confidence 3211 1111 14566789999999999999998 589999986432
Q ss_pred e---eeEeecCC-----CCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCccccce-eeeeecC-C---------ceee
Q 006808 191 K---MQKFSGHP-----GAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSAS-CVLAMEH-P---------AVFM 250 (630)
Q Consensus 191 ~---~~~~~~h~-----~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~-~---------~~~~ 250 (630)
. +.-++.+. .-|++..|+|.. ..|+.++ ..|+|++.|++....-... ..+..+. + -..+
T Consensus 197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI 275 (433)
T KOG1354|consen 197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI 275 (433)
T ss_pred CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence 2 22223232 358889999965 4455555 4899999999854211000 0111110 0 0112
Q ss_pred eeEEecCCccCCCCCEEEEEecCCcEEEEEcCC-cccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCcee
Q 006808 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 329 (630)
.-+.| +++|+++++-+. -+|++||+.- .+++.+.+ +.+ .-+ ..+.+-.....+
T Consensus 276 SDvKF-----s~sGryilsRDy-ltvk~wD~nme~~pv~t~~-----vh~------~lr---~kLc~lYEnD~I------ 329 (433)
T KOG1354|consen 276 SDVKF-----SHSGRYILSRDY-LTVKLWDLNMEAKPVETYP-----VHE------YLR---SKLCSLYENDAI------ 329 (433)
T ss_pred hceEE-----ccCCcEEEEecc-ceeEEEeccccCCcceEEe-----ehH------hHH---HHHHHHhhccch------
Confidence 22334 489999998665 5899999832 22222211 110 000 011111111100
Q ss_pred EEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.....++|+.++.++ +|||.....++.++..
T Consensus 330 --------------------fdKFec~~sg~~~~v-~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 330 --------------------FDKFECSWSGNDSYV-MTGSYNNVFRVFNLAR 360 (433)
T ss_pred --------------------hheeEEEEcCCcceE-ecccccceEEEecCCC
Confidence 123467899999999 9999999999988543
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.01 E-value=8.3e-08 Score=98.82 Aligned_cols=228 Identities=12% Similarity=0.095 Sum_probs=139.0
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..++.++.+|.+..+|..+|+.+........ .++.. .- .+..+++++.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~~~p-----------------~v-------~~~~v~v~~~~ 154 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-----VLSPP-----------------LV-------ANGLVVVRTND 154 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-----eecCC-----------------EE-------ECCEEEEECCC
Confidence 456777888899999999999998766542110 00000 00 04567888899
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCE-----EEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC----C---eE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK----G---IS 163 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v-----~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~---v~ 163 (630)
|.|..||..+|+.+++..... ..+ .+... .+..++.+..++.+..+|..+|+.+........ . ..
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVT-PALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred CeEEEEEcCCCceeeEEccCC-CceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 999999999999887764211 111 11112 234678888899999999999987654331100 0 00
Q ss_pred EEEEcc--CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 164 CMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 164 ~l~~~p--~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+.-+| .+..+++++ |.++.||..+|+.+..... .. ..... ..+..+++++ .++.+..+|..+++.. .
T Consensus 232 ~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~-~~G~l~~~d~~tG~~~---W 303 (377)
T TIGR03300 232 DVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTD-ADGVVVALDRRSGSEL---W 303 (377)
T ss_pred ccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEEC-CCCeEEEEECCCCcEE---E
Confidence 011111 133444443 8999999999987665541 11 11222 2355666666 5999999999888643 1
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
... ........... ..+..|++++.+|.|++||..+|+.+...+
T Consensus 304 ~~~-~~~~~~~ssp~-------i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 304 KND-ELKYRQLTAPA-------VVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred ccc-cccCCccccCE-------EECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 110 10111111111 135788999999999999999998876544
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=3.8e-07 Score=102.31 Aligned_cols=238 Identities=13% Similarity=0.179 Sum_probs=153.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEE----ECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIW----DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
+.| +++.|-++...+..+..+|.|.+. +..+...- . .|.....+.|++|+|.
T Consensus 76 ~~i--vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E--~-----------------VG~vd~GI~a~~WSPD--- 131 (928)
T PF04762_consen 76 DKI--VSFQYLADSESLCIALASGDIILVREDPDPDEDEIE--I-----------------VGSVDSGILAASWSPD--- 131 (928)
T ss_pred CcE--EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE--E-----------------EEEEcCcEEEEEECCC---
Confidence 345 777899999888888889999988 44333221 1 1445667889999887
Q ss_pred cccccCCcEEEEEeCCCeEEEEEcc----C---------C--eee------E-EccC---------------------C-
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVS----A---------G--QLK------W-RLSD---------------------C- 115 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~----~---------~--~~~------~-~~~~---------------------~- 115 (630)
+.+|++.+++|++.+..-. . | +.+ + +.+. +
T Consensus 132 ------~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 132 ------EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred ------cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 7889999999997765321 0 0 000 0 0000 0
Q ss_pred --CCCCEEEEEEecCCCEEEEEeC---C---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEE
Q 006808 116 --HPGGVSAISFATHGSCIYSAGA---D---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLK 182 (630)
Q Consensus 116 --h~~~v~~~~~s~~g~~l~s~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~ 182 (630)
+...-..++|..||.+|++.+. . ..+++|+- .|....+-..-.+--.+++|.|.|.++|+.. ..|.
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 2234567899999999998764 2 57999994 4765544443333345789999999999876 3566
Q ss_pred EEECCCCceeeEee----cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCC
Q 006808 183 TFNCSDHKKMQKFS----GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (630)
Q Consensus 183 lwd~~~~~~~~~~~----~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (630)
+|. ++|-....|. .....|..+.|++++..|++.. .|. |.+|...+..-.. +....+........+.|.+
T Consensus 285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWYL-Kqei~~~~~~~~~~~~Wdp-- 358 (928)
T PF04762_consen 285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWYL-KQEIRFSSSESVNFVKWDP-- 358 (928)
T ss_pred EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEEE-EEEEEccCCCCCCceEECC--
Confidence 665 5665444443 2356799999999999999876 354 9999988765220 0112222222222333433
Q ss_pred ccCCCCCEEEEEecCCcEEEEEc
Q 006808 259 GVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.+...|...+.+|.+..++.
T Consensus 359 ---e~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 359 ---EKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred ---CCCCEEEEEecCCcEEEEEE
Confidence 34567777787788877664
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.97 E-value=8.6e-08 Score=96.00 Aligned_cols=189 Identities=14% Similarity=0.179 Sum_probs=143.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCC--CCCCEEEEEEe------c--------------CCCEEEEEeCCCcEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------T--------------HGSCIYSAGADGMVCE 143 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~s------~--------------~g~~l~s~~~dg~v~i 143 (630)
..+++..+.+|.+++|+...++....+..- -++..++..|. | +-..++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 678999999999999999999876555421 22344444442 1 1225777888999999
Q ss_pred EeCCCCceeEEee--cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 144 IDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 144 wd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+++..|+....+. .|.+.|.++.++.+-..|.+++ +.+..|+....+.++.+......+.+++.+|||..+++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 9999999888876 4778999999999888888887 7999999999999999998889999999999999998865
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC-CCCEEEEEe-cCCcEEEEEcCC
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS-ETGVCYIWYGQN 283 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s-~dg~i~iwd~~~ 283 (630)
+.|++|++.+.+ .+..+.++...+++..|... ++. -|.+++++. .+..+.+|-...
T Consensus 164 --~~ik~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~-~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKE-----VVITFTGHGSPVRTLSFTTL-IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCce-----EEEEecCCCcceEEEEEEEe-ccccccceeeeccccccceeEEEEEc
Confidence 489999999987 44566677777777766511 001 166766654 355677886543
No 273
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=98.96 E-value=4.6e-10 Score=94.78 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=87.6
Q ss_pred hHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhc-ccccCCCChhHHHHHHHHHHHHHHHhhHhHH
Q 006808 492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHG-HHLLSQESLTPMLSSLYKITVSREAAFQSLL 570 (630)
Q Consensus 492 ~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~-~~l~~~~~l~~~l~~L~~~~~~~~~~~~~l~ 570 (630)
..|..+|..|+..++..||+++. .|++|++++...+..+.+||..|+ ..|...|++.+.+..|.+|.++|++++.+|+
T Consensus 49 ~~l~~~i~~L~~~~l~~LL~~ir-~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~ 127 (141)
T PF08625_consen 49 EELDEVIKKLDDEQLEKLLRFIR-DWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLL 127 (141)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHH
Confidence 57999999999999999999999 899999999999999999999776 6788999999999999999999999999999
Q ss_pred hccchHHHHHHHHH
Q 006808 571 RLSGRLQLTMAQID 584 (630)
Q Consensus 571 ~l~g~l~~~~~~~~ 584 (630)
+-...||+++.+|+
T Consensus 128 q~syllDy~l~~M~ 141 (141)
T PF08625_consen 128 QKSYLLDYTLQQMD 141 (141)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999884
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.94 E-value=7.3e-08 Score=90.04 Aligned_cols=232 Identities=19% Similarity=0.274 Sum_probs=151.4
Q ss_pred CCCCCEEEEeeCCCcEEEE-ECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE
Q 006808 14 SPALDYFAICSGDARIKIW-DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (630)
-|-..-+.+.+.|.++||| +.+.++....+. ......++++.+.+. ...|++|
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-----------------~~mP~~~~~~~y~~e---------~~~L~vg 86 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-----------------HYMPSPCSAMEYVSE---------SRRLYVG 86 (404)
T ss_pred ccCCCCeEEccccceeeeEEeccccccCchhh-----------------hhCCCCceEeeeecc---------ceEEEEE
Confidence 3445568889999999999 455555443332 112334556665554 5568999
Q ss_pred eCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 93 TGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
-.+|++.-+.+...- ...+....|...|..+.|+-....+++.+.|..+.---.+.+..+..+.-. ..-+++.+.-
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~ 165 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDA 165 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceee
Confidence 999999888765421 122334579999999999988889999999987765555555544332211 1111112211
Q ss_pred CCCEEEEeC--CeEEEEE--CCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 170 DGKMLATAA--GQLKTFN--CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lwd--~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
. +...|. |.|.+.. ...-.++.++.+|.+.+.+++|.|....|+++. .|..+.+||+...+.. ......|
T Consensus 166 ~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~---~~el~gh 239 (404)
T KOG1409|consen 166 L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGT---AYELQGH 239 (404)
T ss_pred E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcce---eeeeccc
Confidence 1 333443 5444433 344557888999999999999999988888887 5999999999876543 2223334
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
...+- ..+.. +--+.+++++.||.|.+|+.+..
T Consensus 240 ~~kV~-~l~~~-----~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 240 NDKVQ-ALSYA-----QHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhh-hhhhh-----hhheeeeeccCCCeEEEEeccce
Confidence 43333 23322 45688999999999999997654
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=3.8e-09 Score=104.02 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=131.7
Q ss_pred cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-------CceeEEeecCCCCeEEEEEccCCCEEEEeCCeEEEEE
Q 006808 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185 (630)
Q Consensus 113 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd 185 (630)
+.||...|+.++--.+.+.|++++.|++|++|.++. ..|..+++.|+.+|..+.|-.+.++++++.|-|++||
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWD 810 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWD 810 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeec
Confidence 358998998888777778899999999999999863 3477788999999999999999999999999999999
Q ss_pred CCCCceeeEee--cCCCCeEEEEEee--CCcEEEEEeeCCCeEEEEEcCCCccccceeeeee---cCCceeeeeEEecCC
Q 006808 186 CSDHKKMQKFS--GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM---EHPAVFMDCRCIDNG 258 (630)
Q Consensus 186 ~~~~~~~~~~~--~h~~~v~~l~~sp--~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 258 (630)
.--++++..+. ...+.+..+..-| +...++++++...+++++|.+...-. |.... ..+....++....
T Consensus 811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~---~E~kVcna~~Pna~~R~iaVa-- 885 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT---CELKVCNAPGPNALTRAIAVA-- 885 (1034)
T ss_pred ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce---eeEEeccCCCCchheeEEEec--
Confidence 98887765432 1122333333333 34455556567889999999987633 33332 3455566777776
Q ss_pred ccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
+.|++++++-.+|.|.+.|.++|+.+....|.
T Consensus 886 ---~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 886 ---DKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred ---cCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 88999999999999999999999987766654
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=7.3e-07 Score=88.56 Aligned_cols=272 Identities=12% Similarity=0.153 Sum_probs=166.4
Q ss_pred eEECCCCCEEEEeeC-----------CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 11 TSFSPALDYFAICSG-----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 11 ~~fs~dg~~las~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
+.|||+.+||+|-|. ...+.|||+.+|...+.|....+ .......+.|+..+
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~---------------~~~~WP~frWS~Dd-- 317 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS---------------PYLKWPIFRWSHDD-- 317 (698)
T ss_pred eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC---------------CccccceEEeccCC--
Confidence 399999999998763 15799999999999888764211 11234467777653
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-----CCcEEEEeCCCCceeEE
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-----dg~v~iwd~~~~~~~~~ 154 (630)
.+++-- ....|.||+..+-..+ .-..-.-.+|..+.|+|.++.|+--.. -..+.+..+.+++.+++
T Consensus 318 -------Ky~Arm-~~~sisIyEtpsf~ll-d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 318 -------KYFARM-TGNSISIYETPSFMLL-DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred -------ceeEEe-ccceEEEEecCceeee-cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 344433 3367999987763332 111113367999999999888775432 13577778888888777
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC-
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d- 221 (630)
-..+.-.=..+-|-.+|.+|++-- ..+.|+.++..........-...|...+|-|.|..+++-+..+
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence 655444345567778888887632 2455666555443222223456788999999998877755333
Q ss_pred -CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe---cCCcEEEEEcCCcccccccCceeEEe
Q 006808 222 -RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILS 297 (630)
Q Consensus 222 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (630)
.++.+|.+.+.... ...+..+ .......+.|+ |.|++++.++ ..|.+.++|...........+....
T Consensus 469 k~tvsfY~~e~~~~~-~~lVk~~--dk~~~N~vfws-----PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~- 539 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKK-PSLVKEL--DKKFANTVFWS-----PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA- 539 (698)
T ss_pred ccceeEEEeecCCCc-hhhhhhh--cccccceEEEc-----CCCcEEEEEEecccccceEEEecchhhhhhccCccccc-
Confidence 47889988742211 1122222 23444556666 9999998874 4689999998743222221111111
Q ss_pred eccCCCcccccchhhhhhhccccc
Q 006808 298 SSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
.+..-.-|.|+ |+.+++.-.
T Consensus 540 at~veWDPtGR----YvvT~ss~w 559 (698)
T KOG2314|consen 540 ATEVEWDPTGR----YVVTSSSSW 559 (698)
T ss_pred cccceECCCCC----EEEEeeehh
Confidence 11122456666 777776644
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.7e-07 Score=95.51 Aligned_cols=264 Identities=11% Similarity=0.117 Sum_probs=168.0
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.|+--|++|+....|+|+|+.||.++|-.+.+...-...++ -..+..+..+.. ..||. ..+..+.|+...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQt-LeGH~-~sV~vvTWNe~~------- 83 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQT-LEGHN-ASVMVVTWNENN------- 83 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccccchhhh-hccCc-ceEEEEEecccc-------
Confidence 34446779999999999999999999998876554333333 122333444444 33664 467788898764
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCe
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGI 162 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v 162 (630)
..|-+...+|-|.+|-+-.|....... ....+.|.+++|+.+|..+.....||.|.+=.+...+...+ ++ ....
T Consensus 84 --QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l 159 (1189)
T KOG2041|consen 84 --QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLL 159 (1189)
T ss_pred --ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hhec
Confidence 447788889999999998886543332 34557799999999999999999999988777654333221 22 2244
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCC-------ceeeE----eecCCCCeEEEEEe--------eCCcEEEEEeeCC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDH-------KKMQK----FSGHPGAVRFMTFS--------DNGKYVLSSAVGE 221 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~-------~~~~~----~~~h~~~v~~l~~s--------p~~~~l~~~~~~d 221 (630)
..+.|++|.+.++.+- |.+++||.... .+... +......|..+.|. |+...|+++- ..
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~n 238 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-AN 238 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-cC
Confidence 5789999988777765 89999986532 11111 11122335556664 4667777765 67
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC---------cEEEEEcCCcccccccCc
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---------VCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~ 292 (630)
|.+.+..-.....+ .+.. .+-.++. ..|+ ++|..|+.++.+. .|++|. .-|..+++.+.
T Consensus 239 Gr~QiMR~eND~~P---vv~d--tgm~~vg-akWn-----h~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv 306 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEP---VVVD--TGMKIVG-AKWN-----HNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV 306 (1189)
T ss_pred ceehhhhhcCCCCC---eEEe--cccEeec-ceec-----CCCcEEEEccCcccccCccccceEEEec-cchhheEEEec
Confidence 87777654443322 2222 2233333 3444 8999999987642 456554 34555555554
Q ss_pred eeE
Q 006808 293 TKI 295 (630)
Q Consensus 293 ~~~ 295 (630)
+..
T Consensus 307 pg~ 309 (1189)
T KOG2041|consen 307 PGS 309 (1189)
T ss_pred CCc
Confidence 433
No 278
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1e-09 Score=113.67 Aligned_cols=197 Identities=17% Similarity=0.101 Sum_probs=127.6
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC-eEE
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIA 225 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~-~i~ 225 (630)
.+.+++|+.+....+|++|+-+.++|++|+ |.|++|++.+|.......+|..+|+.+.=+.+|..++++++... -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 456677888889999999999999999998 99999999999999999999999999999999998888776554 567
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
+|++.+.-. ..|.-..-.++.|+ .....-+.|+......|||++++..+.+.-........
T Consensus 1171 LW~~~s~~~--------~~Hsf~ed~~vkFs-----n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y------ 1231 (1516)
T KOG1832|consen 1171 LWDASSTGG--------PRHSFDEDKAVKFS-----NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY------ 1231 (1516)
T ss_pred HhccccccC--------ccccccccceeehh-----hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh------
Confidence 899876321 12222222344454 22333445555567899999999888764332221110
Q ss_pred cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+ ..+.-+.+...-.++|.+|.+.-......|..++. -..=.|+|.|..+ +..| -+|++
T Consensus 1232 -~~----n~a~FsP~D~LIlndGvLWDvR~~~aIh~FD~ft~----~~~G~FHP~g~eV-IINS-----EIwD~ 1290 (1516)
T KOG1832|consen 1232 -SN----NLAHFSPCDTLILNDGVLWDVRIPEAIHRFDQFTD----YGGGGFHPSGNEV-IINS-----EIWDM 1290 (1516)
T ss_pred -hc----cccccCCCcceEeeCceeeeeccHHHHhhhhhhee----cccccccCCCceE-Eeec-----hhhhh
Confidence 00 22222223333445666666654333333433331 1223478888877 4444 46766
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.88 E-value=4.7e-07 Score=81.87 Aligned_cols=195 Identities=10% Similarity=-0.021 Sum_probs=128.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
...|+.|+..|...+|.+.+.+....+...|...|+-+.=..+.+ -+..++.|.++++.++.-+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 567889999999999999988765555444554443322222222 3677888999999987644332222211123789
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCc--eee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHK--KMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+.++|+++++++.+ ..|..|.+.... .+. .....+..-.+..|+.....++++. .||++.|||++....+-...
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhh
Confidence 99999999999887 788888876532 233 2223334456788999888888887 79999999998865432223
Q ss_pred eeeecCCceeeeeEEecCCccCCCC--CEEEEEecCCcEEEEEcCCccc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAG--LYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
....+++...++.+-|+ +.| .+|+..-.-+.+++.|++++..
T Consensus 243 sstrp~hnGa~R~c~Fs-----l~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFS-----LYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred cccCCCCCCceEEEEec-----CCCcceEEEEecCcceEEEEEcccCce
Confidence 33445666667777776 443 2333333347899999988754
No 280
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.87 E-value=2.2e-06 Score=82.13 Aligned_cols=217 Identities=18% Similarity=0.208 Sum_probs=133.2
Q ss_pred CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC
Q 006808 26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA 105 (630)
Q Consensus 26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~ 105 (630)
+|+|..||..+|+.+....-.. ... .....+.. .+..+++++.++.|..||..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~------------------~~~~~~~~-------~~~~v~~~~~~~~l~~~d~~t 55 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIG------------------GPVATAVP-------DGGRVYVASGDGNLYALDAKT 55 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCS------------------SEEETEEE-------ETTEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCC------------------CccceEEE-------eCCEEEEEcCCCEEEEEECCC
Confidence 6899999999999988764211 000 00000000 066788889999999999999
Q ss_pred CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe-ecCC---CCeEEEEEccCCCEEEEeC--C
Q 006808 106 GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST---KGISCMAVSSDGKMLATAA--G 179 (630)
Q Consensus 106 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~---~~v~~l~~~p~~~~l~~~~--g 179 (630)
|+.++++... ..+.... ...+..++.++.++.+..+|..+|+.+..+ .... ...........+..++++. +
T Consensus 56 G~~~W~~~~~--~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 56 GKVLWRFDLP--GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp SEEEEEEECS--SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred CCEEEEeecc--cccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence 9998777532 2211111 224556777778889999999999998874 3221 1112222222355555554 8
Q ss_pred eEEEEECCCCceeeEeecCCCC----------eEEEEEeeCCcEEEEEeeCCCe-EEEEEcCCCccccceeeeeecCCce
Q 006808 180 QLKTFNCSDHKKMQKFSGHPGA----------VRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQSASCVLAMEHPAV 248 (630)
Q Consensus 180 ~i~lwd~~~~~~~~~~~~h~~~----------v~~l~~sp~~~~l~~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (630)
.|..+|+++|+.+.....+... +..-....++ .++.++ .++. +.+ |+.+++.. . ... ...
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-~~g~~~~~-d~~tg~~~---w--~~~-~~~ 203 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS-GDGRVVAV-DLATGEKL---W--SKP-ISG 203 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC-CTSSEEEE-ETTTTEEE---E--EEC-SS-
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc-CCCeEEEE-ECCCCCEE---E--Eec-CCC
Confidence 9999999999998877654322 1122222344 555555 4664 555 99998733 1 111 111
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
..... . +.+..|+.++.+|.|..||..+|+.+
T Consensus 204 ~~~~~--~-----~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 204 IYSLP--S-----VDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ECECE--E-----CCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ccCCc--e-----eeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 21111 1 56788888889999999999999764
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.86 E-value=2.1e-08 Score=95.72 Aligned_cols=158 Identities=12% Similarity=0.160 Sum_probs=108.3
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.++|.|+++|.+..+....++++........+.. ........+.+.+...+ ..+.+
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~---------------~~~v~~~~~ai~~~~~~---------~sv~v 124 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD---------------VSCVPKRPTAISFIRED---------TSVLV 124 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeee---------------EeecccCcceeeeeecc---------ceEEE
Confidence 6888999999998888877777654332111100 00011122233333332 23444
Q ss_pred EeCCCe---EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-cCCCCeEEEEE
Q 006808 92 GTGGGD---VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKGISCMAV 167 (630)
Q Consensus 92 ~~~~g~---v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~ 167 (630)
+..-|. +.+|....+.+. ..-||-+.+++++|+||+++|+++..|..|++-....-..+..|. +|..-|..++.
T Consensus 125 ~dkagD~~~~di~s~~~~~~~--~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 125 ADKAGDVYSFDILSADSGRCE--PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL 202 (390)
T ss_pred EeecCCceeeeeecccccCcc--hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee
Confidence 554454 555555555553 334899999999999999999999999999998877666666654 59999999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEee
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFS 196 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~ 196 (630)
.++.. |++++ +++++||+.+|+.+.++.
T Consensus 203 ~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 203 TDNYL-LLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccCce-eeecCCCCcEEEEecccCCcccccc
Confidence 88654 66665 799999999999886664
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.84 E-value=2.1e-07 Score=86.98 Aligned_cols=197 Identities=10% Similarity=0.182 Sum_probs=130.7
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECC----CCcEEEEecccccccccccccccccccccccceeeEEecccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
+++|++.+ .|.++...|+.|-..|++.-+.+. .....+.+..|...+....|+..
T Consensus 67 mP~~~~~~--~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~------------------- 125 (404)
T KOG1409|consen 67 MPSPCSAM--EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT------------------- 125 (404)
T ss_pred CCCCceEe--eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-------------------
Confidence 35677444 999999999999999998887553 33444555556655555555544
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceeEEe
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKF 155 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~--~~~~~~~~~ 155 (630)
..++++.+.|..+.---...+..+..+.. ....+++.|.-. +.+.|...|.|.+-.+ ..-..+.++
T Consensus 126 --------~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~ 193 (404)
T KOG1409|consen 126 --------HEWVLSTGKDKQFAWHCTESGNRLGGYNF--ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTF 193 (404)
T ss_pred --------ceeEEEeccccceEEEeeccCCcccceEe--eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEE
Confidence 45566666665544333333332211110 011111111111 4445555555544433 345677889
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce-eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+|.+.+++++|.|....+.+|. ..+.+||+--++- ...+.+|...|..+...+--+.+++++ .|+.|.+|++...
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~-edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG-EDGGIVVWNMNVK 272 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc-CCCeEEEEeccce
Confidence 99999999999999999999987 7999999976543 345678999999998888888899888 6999999998654
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.84 E-value=4.4e-07 Score=88.34 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=125.0
Q ss_pred ECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 13 FSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 13 fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
|++ +|+++|..|. |...|.+.-.+-.++.- +.+.+ .+.....+ +.-++.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~--~~~~V---------------------rY~r~~~~------~e~~vi 376 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVG--KKGGV---------------------RYRRIQVD------PEGDVI 376 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEcC--CCCce---------------------EEEEEccC------CcceEE
Confidence 555 7889998886 67777766555444321 11111 11111111 446899
Q ss_pred EeCCC-eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccC
Q 006808 92 GTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (630)
Q Consensus 92 ~~~~g-~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (630)
|+.+| .+-|||..+++.. ++. ..-+.|.++..+|+|++++.+.....+.+.|+.+|+....=+...+-|+..+|+|+
T Consensus 377 gt~dgD~l~iyd~~~~e~k-r~e-~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n 454 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVK-RIE-KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN 454 (668)
T ss_pred eccCCceEEEEecCCceEE-Eee-CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence 99999 5999999998864 332 45678999999999999999988888999999999876555556678999999999
Q ss_pred CCEEEEeC------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 171 GKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 171 ~~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
++++|-+- ..|+++|+.+++....- ...+.=.+-+|.|++++|..-+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEe
Confidence 99999885 58999999988765432 2333345668999999887755
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=1.6e-06 Score=79.94 Aligned_cols=198 Identities=16% Similarity=0.193 Sum_probs=111.8
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
++||||+.+||.+...|+|+|||+.. ..+..+....... +.....+..+.|....... .-...|+
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~-----------~d~~~Aiagl~Fl~~~~s~---~ws~ELl 113 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFP-----------GDLSDAIAGLIFLEYKKSA---QWSYELL 113 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccC-----------CccccceeeeEeecccccc---ccceeEE
Confidence 39999999999999999999999864 5555554322111 2223334444444432110 0133567
Q ss_pred EEeCCCeEEEEEccCC-----ee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCc-----------EEEEeCCCCcee
Q 006808 91 LGTGGGDVLALAVSAG-----QL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGM-----------VCEIDPLTGSLL 152 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~-----~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~-----------v~iwd~~~~~~~ 152 (630)
+-...|.++=|-+..+ +. ...+...+...|.++.|+|..+.|+.||.... +..|.+-++.
T Consensus 114 vi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~-- 191 (282)
T PF15492_consen 114 VINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS-- 191 (282)
T ss_pred EEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC--
Confidence 7777888776665322 11 12333445778999999999888887763321 1222211111
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+-.....+. +.-+.....+-.+|.+-+.+...........|..|..||||..|++.. .+|.|.+|++.+-
T Consensus 192 --------Pyyk~v~~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPsL 261 (282)
T PF15492_consen 192 --------PYYKQVTSS-EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH-FSGSLSLWEIPSL 261 (282)
T ss_pred --------CcEEEcccc-CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE-cCCeEEEEecCcc
Confidence 111111111 111111111223333333222222223456799999999999999988 5999999999886
Q ss_pred ccc
Q 006808 233 KKQ 235 (630)
Q Consensus 233 ~~~ 235 (630)
+.+
T Consensus 262 ~~~ 264 (282)
T PF15492_consen 262 RLQ 264 (282)
T ss_pred hhh
Confidence 644
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.2e-06 Score=90.31 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=117.3
Q ss_pred eEeEECCCCCE-EEEeeCC---CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 9 ILTSFSPALDY-FAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 9 ~~~~fs~dg~~-las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+...|||||+. ++..+.+ ..|.++|+.+|+...... ..+ ......|.|..
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g------------------~~~~~~~SPDG------- 244 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG------------------MLVVSDVSKDG------- 244 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC------------------cEEeeEECCCC-------
Confidence 66799999985 6655443 468888998887544322 111 12233455432
Q ss_pred CCcEEEEEeCC--CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CC--cEEEEeCCCCceeEEeecCC
Q 006808 85 GSSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 85 ~~~~l~~~~~~--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~ 159 (630)
..++++.+.+ ..|.++++.++... .+. .+........|+|||+.|+-.+. .+ .|.++|+.+++..+.... .
T Consensus 245 -~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g 320 (419)
T PRK04043 245 -SKLLLTMAPKGQPDIYLYDTNTKTLT-QIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-G 320 (419)
T ss_pred -CEEEEEEccCCCcEEEEEECCCCcEE-Ecc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-C
Confidence 2344444444 45888898887653 332 23333445689999998766543 33 688889887776443321 1
Q ss_pred CCeEEEEEccCCCEEEEeC--C---------eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEE
Q 006808 160 KGISCMAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIAL 226 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g---------~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~v 226 (630)
.. ...|+|+|+.++... . .|++.|+.++.. +.+... .......|+|||+.++......+ .|.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 11 248999999888765 1 578889887764 344432 23345789999998877663333 3666
Q ss_pred EEcCCCc
Q 006808 227 WRTDGVK 233 (630)
Q Consensus 227 wd~~~~~ 233 (630)
.++....
T Consensus 397 ~~l~g~~ 403 (419)
T PRK04043 397 IRLNYNK 403 (419)
T ss_pred EecCCCe
Confidence 6665543
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=4.6e-08 Score=96.54 Aligned_cols=191 Identities=14% Similarity=0.174 Sum_probs=130.8
Q ss_pred CcEEEEEeCCCeEEEEEccC-------CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec-
Q 006808 86 SSLLVLGTGGGDVLALAVSA-------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA- 157 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~-------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~- 157 (630)
.+.+++++.|.+|++|.++. ..+.+++ ..|..+|.++.|-.+.++++++ ||.|.+||.-.++++..+..
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence 67789999999999999863 2355555 4799999999999998888776 88899999887776654321
Q ss_pred -CCCCeEEEEEcc--CCCEEEEeC---CeEEEEECCCCceeeEe-----ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 158 -STKGISCMAVSS--DGKMLATAA---GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 158 -~~~~v~~l~~~p--~~~~l~~~~---g~i~lwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
..+.+..+..-| +..++..++ .+|+++|.+.+.-...+ ++....+++++..+.|+.++++-+ .|.|.+
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS-nGci~~ 902 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALS-NGCIAI 902 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhc-CCcEEE
Confidence 122233333333 344555543 79999999988755544 344567899999999999998874 899999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE-EEcCCcccccccC
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI-WYGQNIEELRNTK 291 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~ 291 (630)
.|.++++..+ ... +......... .|..+.++....|-.+.+ |....+......+
T Consensus 903 LDaR~G~vIN---swr-pmecdllqla-------apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 903 LDARNGKVIN---SWR-PMECDLLQLA-------APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred EecCCCceec---cCC-cccchhhhhc-------CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 9999987431 000 0011111111 166778888778888888 8766665443333
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=7.5e-07 Score=91.84 Aligned_cols=243 Identities=15% Similarity=0.139 Sum_probs=158.4
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc---CC
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL---GS 86 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~~ 86 (630)
++.|+|.| ++|.|+. ..|.|-|..+-+.+..+.-|...++.+.|.|. ...+..-. ..
T Consensus 20 A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~------------------~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPA------------------PSPRDLLSPSSSQ 79 (1062)
T ss_pred ccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccC------------------CCchhccCccccc
Confidence 34889888 8888876 47888899988888888766655555555443 21100000 03
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec---CC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~---~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
-+|+++...|.|.+||...+..+..+. .|..++..++|-+ +. ..|++-....++.+|+..+|+...+........
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 457778888999999999988775654 5888999999976 33 346666777899999999999988877777788
Q ss_pred EEEEEcc-CCCEEE-EeC-CeEEEEECCC-------CceeeEeecCCC-------------------------CeEEEEE
Q 006808 163 SCMAVSS-DGKMLA-TAA-GQLKTFNCSD-------HKKMQKFSGHPG-------------------------AVRFMTF 207 (630)
Q Consensus 163 ~~l~~~p-~~~~l~-~~~-g~i~lwd~~~-------~~~~~~~~~h~~-------------------------~v~~l~~ 207 (630)
.|+.+.| |.+.+. .++ |.+.+.+.-. |+..+.-..|.. ....++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 8899998 444444 344 6666654321 222221112211 0123567
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
+|.-+.++... ..+.+.++|+.-.... ....++.. ..++.++.- |....|.++-.||.+.||--+.
T Consensus 239 ~p~~rn~lfi~-~prellv~dle~~~~l---~vvpier~~akfv~vlP~------~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 239 SPHWRNILFIT-FPRELLVFDLEYECCL---AVVPIERGGAKFVDVLPD------PRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ChhhhceEEEE-eccceEEEcchhhcee---EEEEeccCCcceeEeccC------CCcceEEEEecCCeEEEEEeec
Confidence 77665555555 4788999999876533 22222222 224433321 4557899999999999997544
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=1.3e-06 Score=90.49 Aligned_cols=228 Identities=17% Similarity=0.135 Sum_probs=137.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..++.++.+|.+..+|..+|+.+......... ++.+ +. .+..+++++.+|
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----~ssP------------~v------------~~~~v~v~~~~g 170 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----LSRP------------VV------------SDGLVLVHTSNG 170 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCce-----ecCC------------EE------------ECCEEEEECCCC
Confidence 456677778899999999999988766532110 0000 00 045678888999
Q ss_pred eEEEEEccCCeeeEEccCCCCC----CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-------CeEEE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPG----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-------GISCM 165 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~----~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~l 165 (630)
.+..+|..+|+.+++....... ...+... .+..++.++.+|.+..+|..+|+.+..+..... ....+
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~ 248 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV 248 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccccc
Confidence 9999999999998877532110 0011111 234577778899999999999987655432110 01111
Q ss_pred EEcc---CCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 166 AVSS---DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 166 ~~~p---~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
..+| ++..++++. |.++.+|..+|+.+.+..- .....+. ..+..+++++ .++.+..+|..+++.. ...
T Consensus 249 ~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~-~~g~l~ald~~tG~~~---W~~ 320 (394)
T PRK11138 249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVD-QNDRVYALDTRGGVEL---WSQ 320 (394)
T ss_pred CCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEc-CCCeEEEEECCCCcEE---Ecc
Confidence 1223 444444443 8999999999987655431 1111222 2345666666 5899999999887643 111
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
... .......... .+.+|+.++.+|.++++|..+|+.+...+
T Consensus 321 ~~~-~~~~~~sp~v-------~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 321 SDL-LHRLLTAPVL-------YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred ccc-CCCcccCCEE-------ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 100 0111111111 24678889999999999999998765543
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=1.4e-07 Score=84.84 Aligned_cols=144 Identities=12% Similarity=0.216 Sum_probs=91.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeee-EEccCCCCCCEEEEEEecCCCEEEEEe-----CCCcEEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
++-++++..+|.+.+++...-..+ .++...|.+ -.+.++...++.+.++. .-+..++|+++..+....-....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 566899999999999988752211 111111222 22333334455444432 22345666655333222111123
Q ss_pred CCeEEEEEccCCCEEEE-eC--CeEEEEECCCCce-eeEeecCCCCeEEEEEeeC-CcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLAT-AA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~-~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~-~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|.+++-+|....+++ |+ |.+-+||.++... ...+..|..++..+-|+|. +..|++++ .||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCC
Confidence 35999999996655554 44 8999999998753 3445789999999999985 56788877 799999999875
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.75 E-value=3.9e-06 Score=96.24 Aligned_cols=212 Identities=10% Similarity=0.121 Sum_probs=128.2
Q ss_pred EeEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEeccccccccccccccccc-ccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE-REHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.++|+++++.|+++.. .+.|+++|..++. +.++.+..... ..+..... ....-.....+++.+.+ +.
T Consensus 628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g--~~~~gg~~~~~~~ln~P~gVa~dp~~--------g~ 696 (1057)
T PLN02919 628 GLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKG--SDYQGGKKGTSQVLNSPWDVCFEPVN--------EK 696 (1057)
T ss_pred EEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCccc--CCCCCChhhhHhhcCCCeEEEEecCC--------Ce
Confidence 3489998886666544 5789999987765 33443211000 00000000 00000112245555432 55
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEc-------cCCC------CCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRL-------SDCH------PGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~-------~~~h------~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~ 153 (630)
++++.+.++.|++||..++....-. ..++ -....+++|+|+|+.|+ +-+.++.|++||+.++....
T Consensus 697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL 776 (1057)
T ss_pred EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 6667777888999999877543110 0011 12457899999998655 44567899999998765321
Q ss_pred Eee-------------cC--------CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC------------
Q 006808 154 KFR-------------AS--------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------ 198 (630)
Q Consensus 154 ~~~-------------~~--------~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------ 198 (630)
... .. -.....++++|+|.++++-. +.|++||..++.... +.+.
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccc
Confidence 110 00 01236889999998766655 799999998776543 2221
Q ss_pred --CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 199 --PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 199 --~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
-.....++++++|+.+++-+ .++.|++||+.++..
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence 12467899999998666554 689999999988753
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.74 E-value=7.5e-06 Score=80.00 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=125.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC-cEEEEeCCCCceeEEeecCCCCeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+.+++..+. |+..|.+...+-.+ . .+|.+.|.=..+..+++-++.|..|| .+-++|..+++.. .+...-+.|.+
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~~i-q--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~a 406 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGYSI-Q--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEA 406 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCeeE-E--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEE
Confidence 666666654 66777776655543 2 36888899888888888899999999 8999999877654 45556678999
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC----eEEEEEcCCCccccce
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSAS 238 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~----~i~vwd~~~~~~~~~~ 238 (630)
+..+|+|++++++. ..+.++|+.++.....-+...+-|+.+.|+|++++++.+= .+| .|+++|+..++..
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~Iklydm~~~Kiy--- 482 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSIKLYDMDGGKIY--- 482 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeEEEEecCCCeEE---
Confidence 99999999999988 6888889999986555456677899999999999998864 354 6999999987632
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
....+...--.-+|. |++++|.-.+.
T Consensus 483 ---~vTT~ta~DfsPaFD-----~d~ryLYfLs~ 508 (668)
T COG4946 483 ---DVTTPTAYDFSPAFD-----PDGRYLYFLSA 508 (668)
T ss_pred ---EecCCcccccCcccC-----CCCcEEEEEec
Confidence 222222111122343 88888766554
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=8.5e-06 Score=84.08 Aligned_cols=176 Identities=13% Similarity=0.025 Sum_probs=110.3
Q ss_pred EEEEeCC---CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCC--CcEEEEeCCCCceeEEeecCCCCe
Q 006808 89 LVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGAD--GMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 89 l~~~~~~---g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~d--g~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
++..+.. ..|.++|+.+++...-. ...+......|+|||+.++. .+.+ ..|.++|+.+++.. .+..+....
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d 279 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGID 279 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCcc
Confidence 5544433 45999999988764322 24455677889999987654 4333 46888898877643 344333333
Q ss_pred EEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--------CeEEEEEc
Q 006808 163 SCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--------RYIALWRT 229 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--------~~i~vwd~ 229 (630)
....|+|||+.|+..+ ..|+++|+.+++..+... .... ...|+|+|++++..+... ..|.+.++
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 4568999999888776 279999998877533222 1111 248999999998877433 36888888
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcC
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQ 282 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~ 282 (630)
.++... .++.. .. .....|+ |||++|+..+..+ .+.+.++.
T Consensus 357 ~~g~~~----~LT~~--~~-~~~p~~S-----PDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 357 NSDYIR----RLTAN--GV-NQFPRFS-----SDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCCeE----ECCCC--CC-cCCeEEC-----CCCCEEEEEEccCCcEEEEEEecC
Confidence 777533 11111 11 1123454 9999887776533 35556653
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=9.8e-06 Score=77.94 Aligned_cols=191 Identities=18% Similarity=0.201 Sum_probs=125.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe-cCCCEEEEEeCCCcEEEEeCCCCceeEEeec-----CC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFRA-----ST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~ 159 (630)
+.++++-...+.|+.|+..++....... ....++++. ++| .++.+...+ +.++|+.+++....+.. ..
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~----~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVIDL----PGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEES----SSEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEEec----CCCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence 6677777778999999999987653222 127888888 564 555555544 56669988865444332 23
Q ss_pred CCeEEEEEccCCCEEEEeC----------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 160 KGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
...+.+++.|+|++.++.. |.|+.++.. ++...... .-...+.++|+|+++.|+++.+..+.|..+++
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEec
Confidence 4778999999999777754 247777776 55333333 34567899999999988877767888999998
Q ss_pred CCCcc-c-cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 230 DGVKK-Q-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 230 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
..... . ................-+++. .+|+..++....+.|.+++.. |+.+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-----~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-----SDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-----TTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEc-----CCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 65432 1 111222233333345666676 788888887888999999976 7665543
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=2.1e-07 Score=89.07 Aligned_cols=160 Identities=11% Similarity=0.112 Sum_probs=106.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc----eeEEeecCCCCeEEEEEccCCCEEEEeC--C---eEEEEECCCC
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDH 189 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g---~i~lwd~~~~ 189 (630)
.+..+.+++.+++++.+..+....++++.... ++..+... ..-+++.|..+...+..+. | .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34455667788888888777776677765432 22222222 2234555555444444443 4 5556665554
Q ss_pred ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEE
Q 006808 190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (630)
Q Consensus 190 ~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 269 (630)
.+. .+-||-..++.++|+||+++++++. .|..|++-........ ..+-++|...+-+.... ++..|++
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~I---esfclGH~eFVS~isl~-------~~~~LlS 210 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVI---ESFCLGHKEFVSTISLT-------DNYLLLS 210 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccch---hhhccccHhheeeeeec-------cCceeee
Confidence 433 4458999999999999999999987 7999999877665433 23445555544444433 4677999
Q ss_pred EecCCcEEEEEcCCcccccccC
Q 006808 270 ISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
++.|++|++||+.+|+.+.+..
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cCCCCcEEEEecccCCcccccc
Confidence 9999999999999999986544
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.70 E-value=2.3e-05 Score=75.32 Aligned_cols=217 Identities=17% Similarity=0.191 Sum_probs=129.7
Q ss_pred eEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
..|.+ +|.++++-...+.|..|+..++.... +.... ...+..... ...+
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--------------------~~G~~~~~~---------~g~l 54 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--------------------PNGMAFDRP---------DGRL 54 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--------------------EEEEEEECT---------TSEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--------------------CceEEEEcc---------CCEE
Confidence 37888 67777776678999999998776543 21110 111222211 3446
Q ss_pred EEEeCCCeEEEEEccCCeeeEEcc---CC-CCCCEEEEEEecCCCEEEEEeCC--------CcEEEEeCCCCceeEEeec
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLS---DC-HPGGVSAISFATHGSCIYSAGAD--------GMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~---~~-h~~~v~~~~~s~~g~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~ 157 (630)
+++...+ +.++|+.+++...... .. .....+++++.|+|++.++.... |.|..++.. ++......
T Consensus 55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence 6666544 4555999886532221 11 34568899999999976665533 557788876 55444443
Q ss_pred CCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce----eeEe---ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK----MQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~----~~~~---~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
.-.....|+|+|+++.|+++. +.|..|++..... ...+ ....+..-.+++.++|+..++.. ..+.|.++
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~ 210 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVF 210 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEE
Confidence 344568999999999887654 7899998853221 1222 22223478899999998766554 58899999
Q ss_pred EcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
+.. ++.. ....++ ....+.++|. -++...|...+
T Consensus 211 ~p~-G~~~---~~i~~p--~~~~t~~~fg----g~~~~~L~vTt 244 (246)
T PF08450_consen 211 DPD-GKLL---REIELP--VPRPTNCAFG----GPDGKTLYVTT 244 (246)
T ss_dssp ETT-SCEE---EEEE-S--SSSEEEEEEE----STTSSEEEEEE
T ss_pred CCC-ccEE---EEEcCC--CCCEEEEEEE----CCCCCEEEEEe
Confidence 987 5433 233333 2244555552 15655555443
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.65 E-value=7.7e-06 Score=74.21 Aligned_cols=188 Identities=13% Similarity=0.081 Sum_probs=126.0
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEE-ecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
..+||.|+.-|...+|...+.+.... ...+...+. ... .+ | .. ..-+..++.|
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~---~~~---------r~-c-----d~--------~~~~~i~snd 137 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT---LVK---------RY-C-----DL--------KFPLNIASND 137 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchh---hhh---------hh-c-----cc--------ccceeeccCC
Confidence 35899999999999999886653321 111111000 000 00 0 00 2236788889
Q ss_pred CeEEEEEccCCeeeEEccCCCCC--CEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ce-eEEe-ecCCCCeEEEEEccC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEIDPLTG-SL-LGKF-RASTKGISCMAVSSD 170 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~-~~~~-~~~~~~v~~l~~~p~ 170 (630)
.++++.++..+...... |.. .+.+++++++++++++.+....|..|.+... .. .... ......=.+..|+..
T Consensus 138 ht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred cceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 88888888765443222 322 3889999999999999999999999988643 22 2212 222334467889998
Q ss_pred CCEEEEeC--CeEEEEECCCCceee-----EeecCCCCeEEEEEeeCCc--EEEEEeeCCCeEEEEEcCCCcc
Q 006808 171 GKMLATAA--GQLKTFNCSDHKKMQ-----KFSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 171 ~~~l~~~~--g~i~lwd~~~~~~~~-----~~~~h~~~v~~l~~sp~~~--~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
...+|++. |++.|||++...... +-+.|.+.++.+.|++-|. .|+.+- .-+.+.+.|+++...
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE-hfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE-HFSRVHVVDTRNYVN 286 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec-CcceEEEEEcccCce
Confidence 88999998 999999998754322 2356889999999998664 344332 467899999998764
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.62 E-value=1.1e-05 Score=83.58 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=138.0
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
.+..+++++.+|.+.-+|..+|+.+......... ..++.. ...... ..... .+..+++++.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~~~~-~~~~~~--~~~~v------------~~~~v~v~~~~ 129 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD---GWFSKN-KSALLS--GGVTV------------AGGKVYIGSEK 129 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc---cccccc-cccccc--cccEE------------ECCEEEEEcCC
Confidence 3557777778899999999999988766432200 000000 000000 00000 15668888999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEE-EEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe-----EEEEEcc
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSS 169 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~-~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p 169 (630)
|.+..+|..+|+.+++.... +.+.+ ... .+..++.++.++.+..+|..+|+.+..+......+ .+....
T Consensus 130 g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~- 204 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA- 204 (394)
T ss_pred CEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-
Confidence 99999999999998776432 22222 112 24567778889999999999999887765431111 111111
Q ss_pred CCCEEEEeC-CeEEEEECCCCceeeEeecCC--C-----CeEEEEEee--CCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHP--G-----AVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 170 ~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~--~-----~v~~l~~sp--~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
++..++..+ |.+..+|..+|+.+....... + ....+..+| .+..+++++ .++.+..+|..+++.. .
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~---W 280 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIV---W 280 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEE---E
Confidence 233333333 889999999988765543110 0 001111122 234566665 5899999999988744 2
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
........ ... ..+..|+.++.+|.++.+|..+|+.+-
T Consensus 281 ~~~~~~~~---~~~--------~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 281 KREYGSVN---DFA--------VDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred eecCCCcc---CcE--------EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 22221111 111 245678888899999999999987654
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.62 E-value=2.9e-05 Score=74.04 Aligned_cols=194 Identities=19% Similarity=0.301 Sum_probs=132.2
Q ss_pred CcEEEEEeCCCe-EEEEEccCCeeeEEccCCCCCCE--EEEEEecCCCEEEEEe-----CCCcEEEEeCC-CCceeEEee
Q 006808 86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAG-----ADGMVCEIDPL-TGSLLGKFR 156 (630)
Q Consensus 86 ~~~l~~~~~~g~-v~iwd~~~~~~~~~~~~~h~~~v--~~~~~s~~g~~l~s~~-----~dg~v~iwd~~-~~~~~~~~~ 156 (630)
...++++-.-|+ ..+||+.+++....+.. ..+.- =--.|++||++|++.- ..|.|-+||.. +.+.+..|.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~ 95 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP 95 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence 556777777777 78999999987755532 11111 1247999999999863 45799999998 678888899
Q ss_pred cCCCCeEEEEEccCCCEEEEeC-C-------------------eEEEEECCCCceeeE--e--ecCCCCeEEEEEeeCCc
Q 006808 157 ASTKGISCMAVSSDGKMLATAA-G-------------------QLKTFNCSDHKKMQK--F--SGHPGAVRFMTFSDNGK 212 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~-g-------------------~i~lwd~~~~~~~~~--~--~~h~~~v~~l~~sp~~~ 212 (630)
.+.-....+.+.|||+.|+++. | ++.+.|..+|+.+.. + ..|...|..+++.++|.
T Consensus 96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence 8887788899999998888875 1 355567788887766 4 23777899999999987
Q ss_pred EEEEEeeCCC-------eEEEEEcCCCccccceeeeeec-----CCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEE
Q 006808 213 YVLSSAVGER-------YIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW 279 (630)
Q Consensus 213 ~l~~~~~~d~-------~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iw 279 (630)
.++..- +.+ -+-+++.... . ..+... .-...+.+++++ +++.++++.|- .|.+.+|
T Consensus 176 V~~a~Q-~qg~~~~~~PLva~~~~g~~--~---~~~~~p~~~~~~l~~Y~gSIa~~-----~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 176 VAFAMQ-YQGDPGDAPPLVALHRRGGA--L---RLLPAPEEQWRRLNGYIGSIAAD-----RDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred EEEEEe-cCCCCCccCCeEEEEcCCCc--c---eeccCChHHHHhhCCceEEEEEe-----CCCCEEEEECCCCCEEEEE
Confidence 655432 333 2333332221 1 111111 122455666666 78887766554 6789999
Q ss_pred EcCCcccccccC
Q 006808 280 YGQNIEELRNTK 291 (630)
Q Consensus 280 d~~~~~~~~~~~ 291 (630)
|..+++.+....
T Consensus 245 d~~tg~~~~~~~ 256 (305)
T PF07433_consen 245 DAATGRLLGSVP 256 (305)
T ss_pred ECCCCCEeeccc
Confidence 999998876554
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.61 E-value=1.9e-05 Score=75.57 Aligned_cols=188 Identities=21% Similarity=0.293 Sum_probs=122.0
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEe
Q 006808 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (630)
.+++.++++++.++.|..||..+|+.+..+..... ... . +. . .+..+++++
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~--------------~-------~~-~------~~~~v~v~~ 83 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISG--------------A-------PV-V------DGGRVYVGT 83 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGS--------------G-------EE-E------ETTEEEEEE
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccc--------------e-------ee-e------ccccccccc
Confidence 34667777778999999999999999887763111 100 0 00 0 066678888
Q ss_pred CCCeEEEEEccCCeeeEEc-cCCC--CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC---------
Q 006808 94 GGGDVLALAVSAGQLKWRL-SDCH--PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG--------- 161 (630)
Q Consensus 94 ~~g~v~iwd~~~~~~~~~~-~~~h--~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--------- 161 (630)
.++.+..+|..+|+.+++. .... ............+..++.+..++.|..+|+.+|+.+..+......
T Consensus 84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 8899999999999998874 2211 111223333334788888888999999999999998887664422
Q ss_pred -eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 162 -ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 162 -v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
+..-.+..++..+++.. +.+..+|+.+++.+.... ...+.. ...+.+..+++++ .++.|..||+.+++.
T Consensus 164 ~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred ccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 11222223454444444 543334999998654333 222222 1456677888877 699999999999874
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.61 E-value=8.3e-05 Score=71.00 Aligned_cols=199 Identities=14% Similarity=0.167 Sum_probs=132.5
Q ss_pred eEeEECC-CCCEEEEeeCCCc-EEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSP-ALDYFAICSGDAR-IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~-dg~~las~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
=.++.+| .+..+|.+-.-|+ ..+||..+++....+....+... .|| -.|.+. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF---------yGH-------g~fs~d---------G 62 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF---------YGH-------GVFSPD---------G 62 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE---------ecC-------EEEcCC---------C
Confidence 3448899 5566777776665 67899999998887764333221 122 112221 5
Q ss_pred cEEEEEe-----CCCeEEEEEcc-CCeeeEEccCCCCCCEEEEEEecCCCEEEEEe------------------CCCcEE
Q 006808 87 SLLVLGT-----GGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------------------ADGMVC 142 (630)
Q Consensus 87 ~~l~~~~-----~~g~v~iwd~~-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~------------------~dg~v~ 142 (630)
.+|++.- ..|.|-|||.. +-+.+..+. .|.-....+.+.|||+.|+.+. .+..+.
T Consensus 63 ~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 63 RLLYTTENDYETGRGVIGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred CEEEEeccccCCCcEEEEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 6666543 34679999999 444454553 4656677889999998877762 123456
Q ss_pred EEeCCCCceeEEeec----CCCCeEEEEEccCCCEEEEeC--C-------eEEEEECCCCceeeEee-------cCCCCe
Q 006808 143 EIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA--G-------QLKTFNCSDHKKMQKFS-------GHPGAV 202 (630)
Q Consensus 143 iwd~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~~~~--g-------~i~lwd~~~~~~~~~~~-------~h~~~v 202 (630)
..|..+|+.+..... |...+..+++.++|..++..- | .|-++.. +..+..+. .-.+.+
T Consensus 142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCce
Confidence 667778887777433 666899999999987665543 2 3444443 33233332 234679
Q ss_pred EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
-+|++++++.++++++-..+.+.+||..++...
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 999999999999888767889999999998743
No 301
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=0.00012 Score=66.46 Aligned_cols=143 Identities=21% Similarity=0.271 Sum_probs=98.9
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
.++++.||..+.+.--|..+|....+.. .+..+.|-+... ++++++|+.+|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-------------------lg~RiE~sa~vv----------gdfVV~GCy~g 73 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-------------------LGVRIECSAIVV----------GDFVVLGCYSG 73 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-------------------hCceeeeeeEEE----------CCEEEEEEccC
Confidence 3577888889999999999998876432 111111211111 78899999999
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc-CCCEEE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLA 175 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~ 175 (630)
.+++.+..+|...+.+.....-.+. ....+++..++.++.|++.+..|.++..++.+.+...+...+-++.| ++.+.+
T Consensus 74 ~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred cEEEEEecchhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 9999999999877666533222222 23356889999999999999999999999988776666555666777 555444
Q ss_pred EeC-CeEEEEECCCC
Q 006808 176 TAA-GQLKTFNCSDH 189 (630)
Q Consensus 176 ~~~-g~i~lwd~~~~ 189 (630)
+.. |.+.--....+
T Consensus 153 a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 153 AITAGAVLAVTKNPY 167 (354)
T ss_pred EeccceEEEEccCCC
Confidence 433 66555554443
No 302
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.9e-06 Score=87.98 Aligned_cols=280 Identities=12% Similarity=0.142 Sum_probs=167.8
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee--------------eEEccCCCCCCEEEEEEecCCCE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL--------------KWRLSDCHPGGVSAISFATHGSC 131 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~--------------~~~~~~~h~~~v~~~~~s~~g~~ 131 (630)
....|+.|+.. ..+|++|+.+|.+++..+.+... +...+.||.+.|.-+.|+.+.+.
T Consensus 15 vkL~c~~WNke---------~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 15 VKLHCAEWNKE---------SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred ceEEEEEEccc---------CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc
Confidence 45678999876 67899999999999988764321 22334689999999999999889
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEee--cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee-eEeecCCCCeEEEE
Q 006808 132 IYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVRFMT 206 (630)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~-~~~~~h~~~v~~l~ 206 (630)
|-++..+|.|.+|-+-.|.-...+. ..+.-|.+++|+.+|..++... |.|.+=.+...+.. +.+++ .....+.
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 9999999999999987775322211 1345789999999999887765 76666555443321 11222 2345789
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccc--cceeeee----ecC-CceeeeeEEecC--CccCCCCCEEEEEecCCcEE
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQ--SASCVLA----MEH-PAVFMDCRCIDN--GGVDDAGLYVLAISETGVCY 277 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~--~~~~~~~----~~~-~~~~~~~~~~~~--~~~~~~~~~l~s~s~dg~i~ 277 (630)
|++|.+.++.+- ..|.+.+||....-.. ...|... +.. +..+....|++. ..+-|+...++.+-.+|++.
T Consensus 164 ws~D~~~~Lf~~-ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 164 WSEDLEQALFKK-ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred ecccHHHHHhhh-cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 999998877765 5889999997653211 0112111 111 111222222221 11236888999999999998
Q ss_pred EEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccccc-ccCCceeEEEEEcCccCceeeEEeccCCCcEEEe
Q 006808 278 IWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN 356 (630)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~ 356 (630)
|..-.+...-.-.... ..+. ...+++.+. .++.++.+.- ....+....-.| +.....+.+++.+...|..++
T Consensus 243 iMR~eND~~Pvv~dtg-m~~v-gakWnh~G~----vLAvcG~~~da~~~~d~n~v~Fy-sp~G~i~gtlkvpg~~It~ls 315 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDTG-MKIV-GAKWNHNGA----VLAVCGNDSDADEPTDSNKVHFY-SPYGHIVGTLKVPGSCITGLS 315 (1189)
T ss_pred hhhhcCCCCCeEEecc-cEee-cceecCCCc----EEEEccCcccccCccccceEEEe-ccchhheEEEecCCceeeeeE
Confidence 8754332110000000 1110 111334443 5555555421 111122122222 333445567777888888888
Q ss_pred ecCCccee
Q 006808 357 CSQDGVLL 364 (630)
Q Consensus 357 ~s~dg~~l 364 (630)
|-..|..+
T Consensus 316 WEg~gLri 323 (1189)
T KOG2041|consen 316 WEGTGLRI 323 (1189)
T ss_pred EcCCceEE
Confidence 87777655
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=3.1e-07 Score=85.97 Aligned_cols=141 Identities=15% Similarity=0.272 Sum_probs=106.6
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-----ceeEEeecCCCCeEE
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRASTKGISC 164 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~ 164 (630)
++.+.+-.|.+-|+.+|-.. .+ ...+.|.++.|...++.++.|+.+|.|..+|++.+ .+.+.+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccccc-cc--ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 44555566888888877553 22 25578999999988999999999999999999865 3444444 7788888
Q ss_pred EEEcc-CCCEEEEeC--CeEEEEECCCCce---eeEeecCCCCeEEE--EEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 165 MAVSS-DGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFM--TFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 165 l~~~p-~~~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l--~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+..-. ++.+|.+.+ |.|++||++--++ ++++.||...-.-+ ...+....++++| +|...+||.++.+...
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEecccCcee
Confidence 88766 566666666 9999999987766 88888886543333 3346666777877 7999999999998865
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=2.8e-05 Score=81.82 Aligned_cols=193 Identities=16% Similarity=0.204 Sum_probs=127.6
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+|++.+..+|.|+.+|.|.+.+- +-+.++.|+.+...+....+..+ . ..+|++
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~------------------~--------~~~L~s 82 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN------------------K--------QNFLFS 82 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc------------------C--------ceEEEE
Confidence 78999999999999999888773 33444666654433221122111 1 356666
Q ss_pred EeCCCe-----EEEEEccCC---e---ee--EEcc---C-CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC--C--Cc
Q 006808 92 GTGGGD-----VLALAVSAG---Q---LK--WRLS---D-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--T--GS 150 (630)
Q Consensus 92 ~~~~g~-----v~iwd~~~~---~---~~--~~~~---~-~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~--~--~~ 150 (630)
.+.|+. |+||++..- . ++ .++. . ....++.+++.+.+-+.+++|-.+|.|..+.-. . |.
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS 162 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc
Confidence 665543 899998643 1 22 1111 1 135678999999998889999999999988422 1 11
Q ss_pred eeEEeecCCCCeEEEEEccCCCE--EEEeCCeEEEEECCCCce-eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 151 LLGKFRASTKGISCMAVSSDGKM--LATAAGQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~--l~~~~g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
...-......+|+.+++..++.. +++....|.+|.+....+ ...+..|...+.|-.|++....|++++ +..+.+|
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY 240 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFY 240 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEE
Confidence 11112234569999999988877 344448999999974442 445677788899999987666566655 5589999
Q ss_pred EcCCCc
Q 006808 228 RTDGVK 233 (630)
Q Consensus 228 d~~~~~ 233 (630)
+....+
T Consensus 241 ~sd~~~ 246 (933)
T KOG2114|consen 241 DSDGRG 246 (933)
T ss_pred cCCCcc
Confidence 987654
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.53 E-value=9.4e-05 Score=68.49 Aligned_cols=198 Identities=13% Similarity=0.120 Sum_probs=118.9
Q ss_pred EEEEeCCCeEEEEEccCCe----eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC------
Q 006808 89 LVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS------ 158 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------ 158 (630)
+++...|..|.|-..+..- ....+.+.....-+-++|+||+..|+.+...|+|++||+.. ..+..+...
T Consensus 11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d 89 (282)
T PF15492_consen 11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGD 89 (282)
T ss_pred EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCc
Confidence 4445555566665544321 11233333333467899999999999999999999999864 333333321
Q ss_pred -CCCeEEEEEccCC-------CEEEEeC-CeEEEEECCC-----CceeeEe--e-cCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 159 -TKGISCMAVSSDG-------KMLATAA-GQLKTFNCSD-----HKKMQKF--S-GHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 159 -~~~v~~l~~~p~~-------~~l~~~~-g~i~lwd~~~-----~~~~~~~--~-~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
...|..+.|.+-. .+|+... |.++-|-+.. .+...+| . .+...|.++.|+|..+.|+++|...
T Consensus 90 ~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 90 LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 2366777775421 3444444 7666555422 2223333 2 3467899999999999888877533
Q ss_pred C----------eEEEEEcCCCcccc---------------ceeeeee---------cCCceeeeeEEecCCccCCCCCEE
Q 006808 222 R----------YIALWRTDGVKKQS---------------ASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYV 267 (630)
Q Consensus 222 ~----------~i~vwd~~~~~~~~---------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l 267 (630)
. -+..|.+-.+.+.- ....+.+ ......+--+.. +|||..|
T Consensus 170 ~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl-----SPdg~~L 244 (282)
T PF15492_consen 170 NQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL-----SPDGSLL 244 (282)
T ss_pred CCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE-----CCCCCEE
Confidence 2 26677765543210 0000000 011122222333 4999999
Q ss_pred EEEecCCcEEEEEcCCcccccccCc
Q 006808 268 LAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 268 ~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
|+...+|.|.+|++.+.++.+..+.
T Consensus 245 a~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 245 ACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEEEcCCeEEEEecCcchhhcccch
Confidence 9999999999999999888766543
No 306
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.52 E-value=3.1e-05 Score=87.29 Aligned_cols=198 Identities=12% Similarity=0.193 Sum_probs=126.5
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEE----EccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLAL----AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iw----d~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v 141 (630)
..+..+.+.+. ...++++..+|.|.++ +...... .....-..+|.+++||||+..++.++.++++
T Consensus 76 ~~ivs~~yl~d---------~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 76 DKIVSFQYLAD---------SESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred CcEEEEEeccC---------CCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence 34555666655 5568999999999988 5554433 2222345789999999999999999888888
Q ss_pred EEEeCCCCcee------------------------EEeec------------------------CCCCeEEEEEccCCCE
Q 006808 142 CEIDPLTGSLL------------------------GKFRA------------------------STKGISCMAVSSDGKM 173 (630)
Q Consensus 142 ~iwd~~~~~~~------------------------~~~~~------------------------~~~~v~~l~~~p~~~~ 173 (630)
.+.+- +..++ ..|++ ....-..++|..||.+
T Consensus 145 ~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 145 LLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence 77642 11111 11111 1113357889999999
Q ss_pred EEEeC--------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCCCccccceeeeee
Q 006808 174 LATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 174 l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
+|+.+ ..++||+-+ |....+-..-.+--.+++|.|.|++++++-... ..|.+|.-...+.. ...+..
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg--eF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG--EFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee--eEecCC
Confidence 99875 378999954 654433332233345789999999988876422 35666664443322 122222
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
......+..+.|+ +++..||....|. |++|-..+.
T Consensus 301 ~~~~~~v~~l~Wn-----~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 301 DPEEEKVIELAWN-----SDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCceeeEEEEC-----CCCCEEEEEecCC-ceEEEeeCC
Confidence 2334445556666 8999998877654 999986654
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=7.6e-07 Score=83.41 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=110.3
Q ss_pred EEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC-----ceeeEeecCCCCeEEE
Q 006808 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-----KKMQKFSGHPGAVRFM 205 (630)
Q Consensus 133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~-----~~~~~~~~h~~~v~~l 205 (630)
++.+.+..|-+-|+.+|.. +.|. ..+.|.++.|...++++..|. |.|..+|++.+ .+...+. |...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 5556777788999888754 3344 567899999999888998888 89999999865 2334444 88899998
Q ss_pred EEee-CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 206 TFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 206 ~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
..-. ++++|++++ .+|+|++||++..+... .+.....+........+ .+.+....|++++.|...+||.++.|
T Consensus 305 q~Lq~s~q~LmaS~-M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l~~---~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 305 QILQFSQQKLMASD-MTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYLPA---HVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhccccceEeecc-CcCceeEeeehhhhccc--ceeeeeccccccccccc---ccccccceEEEccCeeEEEEEecccC
Confidence 7665 678888887 59999999998866421 13333322221111111 12367788999999999999999999
Q ss_pred ccccccCceeE
Q 006808 285 EELRNTKATKI 295 (630)
Q Consensus 285 ~~~~~~~~~~~ 295 (630)
..+.+.+....
T Consensus 379 hLl~tipf~~s 389 (425)
T KOG2695|consen 379 HLLCTIPFPYS 389 (425)
T ss_pred ceeeccCCCCc
Confidence 99888765443
No 308
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=98.46 E-value=2.9e-07 Score=79.34 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=84.8
Q ss_pred CChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccccCCCChhHHHHHHHHHHHHHHHhhHh
Q 006808 489 IPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKITVSREAAFQS 568 (630)
Q Consensus 489 ~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l~~~l~~L~~~~~~~~~~~~~ 568 (630)
..+..+..++...+...+.+||.|++..+ ++|+....++.++..||.+++..+...|.+.+.+..|+..+.+..+...+
T Consensus 59 ~~R~~L~~AL~~Rde~~L~piL~Fl~k~i-~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~ 137 (148)
T PF09384_consen 59 IRRGALRAALAGRDEESLEPILKFLIKNI-TDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKE 137 (148)
T ss_pred HHccHHHHHHHhCCHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999665 69999999999999999999999999999999999999999999999999
Q ss_pred HHhccchHHHH
Q 006808 569 LLRLSGRLQLT 579 (630)
Q Consensus 569 l~~l~g~l~~~ 579 (630)
|+++.|+|+++
T Consensus 138 l~~l~G~ld~L 148 (148)
T PF09384_consen 138 LLELQGMLDML 148 (148)
T ss_pred HHHHHhHHhhC
Confidence 99999999985
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=4.3e-06 Score=88.06 Aligned_cols=183 Identities=15% Similarity=0.223 Sum_probs=132.1
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
++..++.|+-...+..+|+.+.+....... ..+.|+-+.. +++.+++|...|+|.+-|.++.+.+++|.+|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 466778888888899999998887644432 2234655554 6789999999999999999999999999999998876
Q ss_pred EEEccCCCEEEEeC-----------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCC
Q 006808 165 MAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 165 l~~~p~~~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+.. .|+.|++++ .-|+|||++.-+.+..+.-+.++ .-+.|+|.- ..+++++ ..|...+.|..+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S-~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS-QSGQFQFVDTATL 298 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-cccceeecccccc
Confidence 655 578888887 14789999988776665545444 456788864 3455555 5888898884432
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
.... ..++.....+..+...+++ ++|..++.|..+|.|.+|-
T Consensus 299 sNP~-~~~~~v~p~~s~i~~fDiS-----sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPP-AGVKMVNPNGSGISAFDIS-----SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCc-cceeEEccCCCcceeEEec-----CCCceEEEecccCcEeeec
Confidence 2211 1233333334445666666 8999999999999999997
No 310
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.45 E-value=5.3e-06 Score=76.70 Aligned_cols=192 Identities=15% Similarity=0.147 Sum_probs=120.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCe-eeEEc---cCCCC------------CCEEEEEEecCCC--EEEEEeCCCcEEEEeCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQ-LKWRL---SDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL 147 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~-~~~~~---~~~h~------------~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~ 147 (630)
|.++++|...|.|.+|.-.... +...+ +++|. ..|..+.|..++. .|+..+.|.+|++|.+.
T Consensus 38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy 117 (460)
T COG5170 38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY 117 (460)
T ss_pred cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence 6788888888999999765432 11111 23343 2578888876543 47778899999999875
Q ss_pred CCce------------------------------------------eEEe-ecCCCCeEEEEEccCCCEEEEeC-CeEEE
Q 006808 148 TGSL------------------------------------------LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKT 183 (630)
Q Consensus 148 ~~~~------------------------------------------~~~~-~~~~~~v~~l~~~p~~~~l~~~~-g~i~l 183 (630)
.... .+.+ ..|...+.++.|+.|...++++. =.|.+
T Consensus 118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL 197 (460)
T COG5170 118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL 197 (460)
T ss_pred cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence 3210 0001 23555678899999999999988 68999
Q ss_pred EECCCCce---eeEeecCC-----CCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCccccce-eeee--ec---C---
Q 006808 184 FNCSDHKK---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSAS-CVLA--ME---H--- 245 (630)
Q Consensus 184 wd~~~~~~---~~~~~~h~-----~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~~~~-~~~~--~~---~--- 245 (630)
|++.-... +..++.|. .-|++..|+|... .+..++ ..|.|++-|++....-... ..+. .. +
T Consensus 198 Wnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff 276 (460)
T COG5170 198 WNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFF 276 (460)
T ss_pred ccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-CCCcEEehhhhhhhhccCchhhhhhccCcccchhH
Confidence 99864322 22334443 3578889999654 344444 4899999999853211000 0111 11 0
Q ss_pred --CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 246 --PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
-...+.-..|+ ++|++|++-+. -+++|||....
T Consensus 277 ~eivsSISD~kFs-----~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 277 EEIVSSISDFKFS-----DNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred HHHhhhhcceEEc-----CCCcEEEEecc-ceEEEEecccc
Confidence 01122333444 89999988766 58999998644
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.45 E-value=7.6e-07 Score=91.26 Aligned_cols=200 Identities=21% Similarity=0.266 Sum_probs=132.6
Q ss_pred CcccceeEeEECCCC-CEEEEeeCCCcEEEEECCCCcE-EEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
+..|+++ -|.|.. ..+|+|+.|-.+..||+.+... +..+.. .....+.+.|+..+|.
T Consensus 114 sraitd~--n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~------------------w~s~asqVkwnyk~p~- 172 (1081)
T KOG0309|consen 114 SRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS------------------WRSAASQVKWNYKDPN- 172 (1081)
T ss_pred ccceecc--ccCCCCCcceeeccccccceeeeccCCCcceeeeec------------------ccccCceeeecccCcc-
Confidence 3466555 888865 5899999999999999986543 322221 1123456788877654
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEE-eecC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK-FRAS 158 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~ 158 (630)
+++.+....|++||.+.|.......++|...|.++.|+.- -..+++++.||+|+.||......... ....
T Consensus 173 --------vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 173 --------VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred --------hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 4445555569999999887765666789999999999762 33588999999999999865432221 1223
Q ss_pred CCCeEEEEEccCCCEEEEe----CCeEEE---------EECCC-CceeeEeecCCCCeEEEEEeeCC----------cEE
Q 006808 159 TKGISCMAVSSDGKMLATA----AGQLKT---------FNCSD-HKKMQKFSGHPGAVRFMTFSDNG----------KYV 214 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~----~g~i~l---------wd~~~-~~~~~~~~~h~~~v~~l~~sp~~----------~~l 214 (630)
..+|..-++.|-|.-..+- ++.+.+ |+..+ .+++.+|.||...|....|-..+ -.|
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeE
Confidence 4467777777755433321 133333 33333 35788999999888766664322 146
Q ss_pred EEEeeCCCeEEEEEcCCC
Q 006808 215 LSSAVGERYIALWRTDGV 232 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~ 232 (630)
++=+ .|..+++|-+...
T Consensus 325 VTWS-kD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 325 VTWS-KDQTLRLWPIDSQ 341 (1081)
T ss_pred EEee-cCCceEeeeccHH
Confidence 6655 7999999988653
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.42 E-value=9.8e-07 Score=57.20 Aligned_cols=39 Identities=23% Similarity=0.604 Sum_probs=35.9
Q ss_pred CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
++++.++.+|..+|++++|+|++.+|++++ .|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 357889999999999999999999999998 699999997
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=2e-07 Score=97.24 Aligned_cols=193 Identities=16% Similarity=0.274 Sum_probs=135.1
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC--CcEEE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCE 143 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d--g~v~i 143 (630)
..++|++|... .+.|++|+..|.|++|++.+|.....+ .+|.++|+-+.-+.+|..+++.+.- ....+
T Consensus 1102 ~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cceeeEEeecC---------CceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHH
Confidence 45777777654 678999999999999999999877555 5899999999999999987765533 25789
Q ss_pred EeCCC-CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ec---CCCCeEEEEEeeCCcEEEE
Q 006808 144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SG---HPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 144 wd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~---h~~~v~~l~~sp~~~~l~~ 216 (630)
|++.+ +...++|.. -.++.|+.....-+.|. ....+||+.++.++.++ .+ ....-+.+.|+|+...++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99864 455555553 35678877543333443 68899999999877763 21 222346789999988765
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
+|| .+||++..... ..+..-. ....-.| .|+|.-++.-+. |||+++.+.++..+...
T Consensus 1247 ---ndG--vLWDvR~~~aI-----h~FD~ft-~~~~G~F-----HP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAI-----HRFDQFT-DYGGGGF-----HPSGNEVIINSE-----IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred ---eCc--eeeeeccHHHH-----hhhhhhe-ecccccc-----cCCCceEEeech-----hhhhHHHHHHhcCcccc
Confidence 466 57999887532 2222222 1112223 399998888664 89999999887665443
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.41 E-value=4.2e-06 Score=88.14 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=128.6
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..+..|+-...+..+|+.+.+......-.. ..++.+.. +++++++|...
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a------------------~~v~imR~-----------Nnr~lf~G~t~ 196 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA------------------SGVTIMRY-----------NNRNLFCGDTR 196 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC------------------CceEEEEe-----------cCcEEEeeccc
Confidence 34566677766778888988877665432111 12333332 26789999999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---------CCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
|+|.+-|+.+.+.+.++ .+|++.|.++.. .|+.|++||. |.-|++||++..+.+..+.-+.++ .-+.
T Consensus 197 G~V~LrD~~s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr 272 (1118)
T KOG1275|consen 197 GTVFLRDPNSFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR 272 (1118)
T ss_pred ceEEeecCCcCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence 99999999999998777 489999998776 6889999874 456899999988877776655554 5678
Q ss_pred EccC-CCEEEEeC--CeEEEEE---CCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 167 VSSD-GKMLATAA--GQLKTFN---CSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 167 ~~p~-~~~l~~~~--g~i~lwd---~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
|+|. ...+++++ |...+.| +.+.. .+..+......+.++.+++++..++.+. .+|.|.+|.
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-~~g~v~~wa 340 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-HEGHVNLWA 340 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-ccCcEeeec
Confidence 8884 23444444 8999888 33332 1222333445699999999999999987 599999998
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=1.5e-05 Score=83.18 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=116.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
..+++.|+.+|.|++++.+..- . +.. .|+.. .-+|.++++|+.||+|.|..+.+.+...++. ...++.++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~-~~~-~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi 118 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-K-TNF-DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI 118 (846)
T ss_pred cceeeeccccceEEEEecCCcc-c-ccc-ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence 6789999999999999987553 1 222 35443 5589999999999999999999888877666 45689999
Q ss_pred EEccC-----CCEEEEeC--CeEEEEECCC--CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 166 AVSSD-----GKMLATAA--GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 166 ~~~p~-----~~~l~~~~--g~i~lwd~~~--~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
+++|+ .+.+++|+ | +.++.-+= .+.-..+....++|.++.|. |.+++-+. ++ -|+|||+.+++...
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~-Gv~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DD-GVKVYDTPTRQRLT 193 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CC-CcEEEeccccceee
Confidence 99997 56788887 5 66654221 11111344557899999997 77887775 34 48999998876441
Q ss_pred ceeee-eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 237 ASCVL-AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 237 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..... ....+..+.....| .+...|+.|-. .+|+|..++
T Consensus 194 ~i~~p~~~~R~e~fpphl~W------~~~~~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 194 NIPPPSQSVRPELFPPHLHW------QDEDRLVIGWG-DSVKICSIK 233 (846)
T ss_pred ccCCCCCCCCcccCCCceEe------cCCCeEEEecC-CeEEEEEEe
Confidence 00000 00111222223334 24556666654 478888776
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.37 E-value=9.4e-07 Score=79.66 Aligned_cols=148 Identities=14% Similarity=0.193 Sum_probs=95.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-eeEEeecCCCCeEEEEEccCCCEEEEeC-C------eEEEEECCCCceeeEeecCC
Q 006808 128 HGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCMAVSSDGKMLATAA-G------QLKTFNCSDHKKMQKFSGHP 199 (630)
Q Consensus 128 ~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g------~i~lwd~~~~~~~~~~~~h~ 199 (630)
-+..+++++.||.+.+++.+.-. ..+.+......-.+.++...+..+.++. | ..+.|+++..+.+..-....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 45678999999999999876421 1111111111223334444566666665 3 45566655433221111112
Q ss_pred CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 200 ~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
..|++++-+|..+.++.+|.+||.+-+||.+....+ ..+...|...+..+.+.+ .++..|+++++||.+.-|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHp-----k~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHP-----KNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccC-----CCchheeEecCCCcEEEE
Confidence 348899999988888888889999999999987533 223334555555555555 577899999999999999
Q ss_pred EcCC
Q 006808 280 YGQN 283 (630)
Q Consensus 280 d~~~ 283 (630)
|..+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9764
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.32 E-value=0.00014 Score=74.89 Aligned_cols=216 Identities=12% Similarity=0.125 Sum_probs=115.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
-.+.++|+|++++.++ ||...||.....+.... .....+.|.+. +.
T Consensus 36 ~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----------------------G~g~~~vw~~~----------n~ 81 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----------------------GSGLSFVWSSR----------NR 81 (443)
T ss_dssp SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----------------------EE-SEEEE-TS----------SE
T ss_pred eeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----------------------CceeEEEEecC----------cc
Confidence 3459999999999855 68888887443333221 12345777772 23
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++-..+++|.|+.--.......+... ..+..+-. |..|...+.+ .|.+||+.+++.++.+... +|..+.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 677777888999633222222223222 23444433 7777666554 7999999999999998843 48999999
Q ss_pred cCCCEEEEeC-CeEEEEECCCC-----------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 169 SDGKMLATAA-GQLKTFNCSDH-----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 169 p~~~~l~~~~-g~i~lwd~~~~-----------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
++|.+++..+ .++++++.... .....+..-...|.+..|..+ .|+.+. .. .|+. +..+...
T Consensus 154 ~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~-~lkY--l~~Ge~~- 226 (443)
T PF04053_consen 154 DDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN-HLKY--LVNGETG- 226 (443)
T ss_dssp TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EEEE--EETTEEE-
T ss_pred CCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC-eEEE--EEcCCcc-
Confidence 9999999988 88888875433 023333322567889999866 444443 23 6766 4444422
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.+..+..+-.. +... |....+.....++.+..+.+..
T Consensus 227 --~i~~ld~~~yl---lgy~-----~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 --IIAHLDKPLYL---LGYL-----PKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --EEEE-SS--EE---EEEE-----TTTTEEEEE-TT--EEEEE--H
T ss_pred --eEEEcCCceEE---EEEE-----ccCCEEEEEECCCCEEEEEECH
Confidence 23333333333 3332 5557777788888887776643
No 318
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=8.5e-05 Score=77.23 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=109.7
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccC------------CCEEEEeC--CeEE
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD------------GKMLATAA--GQLK 182 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~------------~~~l~~~~--g~i~ 182 (630)
...-.++.|+|.| .|+.|+. ..|.+.|..+.+.++.+..|...|+.+.|.|- .-.||++. |.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346778899876 5666654 46899999999999999999999999999873 12456666 9999
Q ss_pred EEECCCCceeeEeecCCCCeEEEEEee---CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCc
Q 006808 183 TFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGG 259 (630)
Q Consensus 183 lwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (630)
+||...+..+..+..|..++..++|-| +.+.++.+-....+|.+|+..+|++. . .......+..+.-+. .
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~---W--k~~ys~~iLs~f~~D--P 165 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF---W--KYDYSHEILSCFRVD--P 165 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee---e--ccccCCcceeeeeeC--C
Confidence 999999988888888899999999976 34344333335779999999998754 2 222233334433333 1
Q ss_pred cCCCCCEEEEEecCCcEEEEEc
Q 006808 260 VDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
-|.+++...+..|.+.+-+.
T Consensus 166 --fd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 166 --FDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred --CCcceEEEEccCceEEEEec
Confidence 13466666666677777653
No 319
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.29 E-value=0.00064 Score=61.92 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=117.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
..+++.|+..+.+.-.|.++|+..++..-+ ..|.+-+.- -|.+++.|+..|.+++.+..+|.....|.....-=...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 568899999999999999999998876544 334333322 36789999999999999999998888887654422334
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccceeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 242 (630)
...+++..+..++ ++.+..|.++..++...+...+.-.+-++.| ++...++ . ..|.+---........ ....
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~-t~G~vlavt~~~~~~~---~~w~ 174 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-I-TAGAVLAVTKNPYSST---EFWA 174 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-e-ccceEEEEccCCCCcc---eehh
Confidence 5678888999998 8999999999888777654433333445556 4443333 3 2343333333222100 0111
Q ss_pred ecCCceeeee-EEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 243 MEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
......+... ++. +..+..++-||.+.-|+ .+|+++..
T Consensus 175 ~~~~~PiF~splcv--------~~sv~i~~VdG~l~~f~-~sG~qvwr 213 (354)
T KOG4649|consen 175 ATRFGPIFASPLCV--------GSSVIITTVDGVLTSFD-ESGRQVWR 213 (354)
T ss_pred hhcCCccccCceec--------cceEEEEEeccEEEEEc-CCCcEEEe
Confidence 1111111111 222 35666677777777777 56666553
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.28 E-value=0.00069 Score=68.83 Aligned_cols=304 Identities=12% Similarity=0.079 Sum_probs=146.6
Q ss_pred CCCCCEEEEee---------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 14 SPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 14 s~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
||||++++... ..+.+.|||+.+++....... ........|+|.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-------------------~~~~~~~~~sP~-------- 53 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-------------------PPKLQDAKWSPD-------- 53 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-------------------ETTBSEEEE-SS--------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-------------------ccccccceeecC--------
Confidence 68998887742 246788999998765543221 123334556554
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCC----------------CCCEEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----------------PGGVSAISFATHGSCIYSAG-ADGMVCEIDPL 147 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h----------------~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~ 147 (630)
++.++... ++.|.+++..++....-...+- -+.-.++-|||||++|+... .+..|..+.+.
T Consensus 54 -g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 54 -GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp -STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred -CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 44555544 5789999988775543222220 11235688999999987664 34444444321
Q ss_pred CCceeEEeecCCC---CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeE-ee----cCCCCeEEEEEeeCCcEEEEEe-
Q 006808 148 TGSLLGKFRASTK---GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-FS----GHPGAVRFMTFSDNGKYVLSSA- 218 (630)
Q Consensus 148 ~~~~~~~~~~~~~---~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~-~~----~h~~~v~~l~~sp~~~~l~~~~- 218 (630)
.+..... .+..+.+---|.--. .-.+.++|+.+++.... .. .-...+..+.|.+++..|++.-
T Consensus 132 ------~~~~~~~~yp~~~~~~YPk~G~~np--~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 132 ------DYSPPDSQYPEVESIRYPKAGDPNP--RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp ------EESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred ------ccCCccccCCcccccccCCCCCcCC--ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 1111111 233333322221111 02577889988875321 11 2345688999999998444433
Q ss_pred eCCC---eEEEEEcCCCccccceeeeeecCCcee---eeeEEecCCccCCCCCEEEEEecCCcEE--EEEcCCccccccc
Q 006808 219 VGER---YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAISETGVCY--IWYGQNIEELRNT 290 (630)
Q Consensus 219 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~dg~i~--iwd~~~~~~~~~~ 290 (630)
..+. .+.++|..++... .+........+ .....+. ..++.+|.....+|.-+ +++...+.. +..
T Consensus 204 nR~q~~~~l~~~d~~tg~~~---~~~~e~~~~Wv~~~~~~~~~~----~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~l 275 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETR---VVLEETSDGWVDVYDPPHFLG----PDGNEFLWISERDGYRHLYLYDLDGGKP-RQL 275 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCE---EEEEEESSSSSSSSSEEEE-T----TTSSEEEEEEETTSSEEEEEEETTSSEE-EES
T ss_pred ccCCCEEEEEEEECCCCcee---EEEEecCCcceeeeccccccc----CCCCEEEEEEEcCCCcEEEEEcccccce-ecc
Confidence 2222 4677788776533 22222222221 1122221 03445555556778544 455555542 222
Q ss_pred CceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeecccc
Q 006808 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (630)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s 369 (630)
......+.....+.++.+. ..++|..++ ....++..+... .....+.++........+.|||||++++.+.|
T Consensus 276 T~G~~~V~~i~~~d~~~~~---iyf~a~~~~---p~~r~lY~v~~~-~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNR---IYFTANGDN---PGERHLYRVSLD-SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-SSS-EEEEEEEECTSSE---EEEEESSGG---TTSBEEEEEETT-ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ccCceeecccceEcCCCCE---EEEEecCCC---CCceEEEEEEeC-CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 2222222111112333331 233444422 223334333322 23444555555554579999999999855544
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=2.8e-06 Score=55.03 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=31.2
Q ss_pred cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 113 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 358999999999999999999999999999997
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0001 Score=77.11 Aligned_cols=173 Identities=10% Similarity=0.114 Sum_probs=121.7
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+++||.|..+|.|++++.. |.. .+...|... +. .|.++++|+.||
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~---------------------------~~------~Gey~asCS~DG 93 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS---------------------------IL------EGEYVASCSDDG 93 (846)
T ss_pred cceeeeccccceEEEEecC-Ccc-ccccccccc---------------------------cc------CCceEEEecCCC
Confidence 5789999999999999875 332 221111110 11 188999999999
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecC-----CCEEEEEeCCCcEEEEeCC--CCceeEEeecCCCCeEEEEEcc
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATH-----GSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~-----g~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~p 169 (630)
+|.|-.+-+.+....+ ....++.+++++|+ .+.+++||.-| +.++.-+ ..+....+....++|.++.|.
T Consensus 94 kv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 94 KVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR- 169 (846)
T ss_pred cEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec-
Confidence 9999999888765444 34578999999997 56799999888 7776522 111112355567899999996
Q ss_pred CCCEEEEeC-CeEEEEECCCCceeeEeecCCCC------eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGA------VRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 170 ~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~------v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
|+++|-++ --|++||+.+++.+..++..... ...+.|.++.+ |+.| +..+|+|..++.+
T Consensus 170 -g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG--W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 170 -GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG--WGDSVKICSIKKR 235 (846)
T ss_pred -CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe--cCCeEEEEEEecc
Confidence 77999998 57899999998877666433222 34578877664 4443 5668999999843
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.23 E-value=0.00025 Score=77.70 Aligned_cols=194 Identities=13% Similarity=0.157 Sum_probs=125.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+++.|-.++..+..+...|.|.+-|..+..... .|.....+.++.|.+. +.+
T Consensus 72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-------------------vg~vd~GI~aaswS~D---------ee~ 123 (1265)
T KOG1920|consen 72 VSVQFLADTNSICVITALGDIILVDPETLELEI-------------------VGNVDNGISAASWSPD---------EEL 123 (1265)
T ss_pred EEEEEecccceEEEEecCCcEEEEcccccceee-------------------eeeccCceEEEeecCC---------CcE
Confidence 566788888888888888999988877654321 1455667778888876 678
Q ss_pred EEEEeCCCeEEEEEc----cCCeee----------E--------EccCC---------------------CCCCEEEEEE
Q 006808 89 LVLGTGGGDVLALAV----SAGQLK----------W--------RLSDC---------------------HPGGVSAISF 125 (630)
Q Consensus 89 l~~~~~~g~v~iwd~----~~~~~~----------~--------~~~~~---------------------h~~~v~~~~~ 125 (630)
++..++.+++.+-.- -..+.+ . +-+.| ....=+.|.|
T Consensus 124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW 203 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW 203 (1265)
T ss_pred EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE
Confidence 888888888665432 100000 0 00000 0011245899
Q ss_pred ecCCCEEEEEe----CC-CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceee--
Q 006808 126 ATHGSCIYSAG----AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQ-- 193 (630)
Q Consensus 126 s~~g~~l~s~~----~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~-- 193 (630)
.-||.+|++.. .+ ..|++||-. |..-.+-....+--.+++|-|.|..+++-. +.|.+|.- +|-...
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f 281 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEF 281 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcccccc
Confidence 99999988732 33 789999966 544333222333446899999999998864 56888873 443222
Q ss_pred --EeecCCCCeEEEEEeeCCcEEEE---EeeCCCeEEEEEcCCCc
Q 006808 194 --KFSGHPGAVRFMTFSDNGKYVLS---SAVGERYIALWRTDGVK 233 (630)
Q Consensus 194 --~~~~h~~~v~~l~~sp~~~~l~~---~~~~d~~i~vwd~~~~~ 233 (630)
.++....+|..++|+.++..|++ .. ....|++|-+.+..
T Consensus 282 ~l~~p~de~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 282 VLPFPLDEKEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNYH 325 (1265)
T ss_pred ccCCcccccchheeeecCCCCceeeeeccc-ccceEEEEEecCeE
Confidence 23334455899999999998887 33 34459999987754
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.22 E-value=0.0003 Score=74.70 Aligned_cols=235 Identities=17% Similarity=0.204 Sum_probs=137.3
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEeccccccccc--ccccccccccccccceeeEEecccccccccccCCcEEEEEe--
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT-- 93 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~-- 93 (630)
..++.++.+|.|.-+|..+|+.+..+......... +.-+|. .+ +..+++++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~-------------v~------------~~~v~vg~~~ 165 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPT-------------IV------------KKLVIIGSSG 165 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCE-------------EE------------CCEEEEeccc
Confidence 57777888999999999999998876532211000 000010 00 33455554
Q ss_pred -------CCCeEEEEEccCCeeeEEccCCCCC-------------------CE-EEEEEecCCCEEEEEeCCC-------
Q 006808 94 -------GGGDVLALAVSAGQLKWRLSDCHPG-------------------GV-SAISFATHGSCIYSAGADG------- 139 (630)
Q Consensus 94 -------~~g~v~iwd~~~~~~~~~~~~~h~~-------------------~v-~~~~~s~~g~~l~s~~~dg------- 139 (630)
.+|.|..+|..+|+.++++...+.. .| ...++.+.+..++.++.++
T Consensus 166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~ 245 (488)
T cd00216 166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGG 245 (488)
T ss_pred cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCC
Confidence 3578899999999988776432111 01 1234455566788777665
Q ss_pred -----------cEEEEeCCCCceeEEeecCCCCeE------EEEEc----cCCC---EEEEeC--CeEEEEECCCCceee
Q 006808 140 -----------MVCEIDPLTGSLLGKFRASTKGIS------CMAVS----SDGK---MLATAA--GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 140 -----------~v~iwd~~~~~~~~~~~~~~~~v~------~l~~~----p~~~---~l~~~~--g~i~lwd~~~~~~~~ 193 (630)
.|..+|..+|+..-.++....... ...+. -++. .+++++ |.++.+|..+|+.+-
T Consensus 246 ~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 246 RRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred ccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 799999999998877653211111 01111 1232 455554 899999999999876
Q ss_pred EeecCCCCeEEEEEeeCCcEEEEEe-----------------eCCCeEEEEEcCCCccccceeeeeecC-C------cee
Q 006808 194 KFSGHPGAVRFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCVLAMEH-P------AVF 249 (630)
Q Consensus 194 ~~~~h~~~v~~l~~sp~~~~l~~~~-----------------~~d~~i~vwd~~~~~~~~~~~~~~~~~-~------~~~ 249 (630)
..... ...++.+| + .++..+ ..++.+...|+.+++.. ....... . ...
T Consensus 326 ~~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~---W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 326 ARPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV---WEKREGTIRDSWNIGFPH 397 (488)
T ss_pred EeEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe---eEeeCCccccccccCCcc
Confidence 65321 01123333 2 222211 13567888888887744 2222210 0 001
Q ss_pred e-eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 250 M-DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 250 ~-~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
. .... ..+..|++++.||.|+.+|..+|+.+-..+.
T Consensus 398 ~~~~~~-------~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 398 WGGSLA-------TAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cCcceE-------ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 0 1111 2467888999999999999999998876554
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.1e-05 Score=73.01 Aligned_cols=238 Identities=14% Similarity=0.098 Sum_probs=132.7
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..-||++ +|||..+ ++..++.+.+|+|.|+.+..++..+..+ . .+-.++|.-.+
T Consensus 193 g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~------------------~~wSC~wDlde---- 247 (463)
T KOG1645|consen 193 GSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-N------------------QIWSCCWDLDE---- 247 (463)
T ss_pred chhhhhh--ccCccccceeeeeccCceEEEEecccceeeeheecc-C------------------CceeeeeccCC----
Confidence 3467777 9999887 7888999999999999998888766533 1 22345565554
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCC--CCCCEEEEEEe------cCCCEEEEEeCCCcEEEEeCCC--Cce
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------THGSCIYSAGADGMVCEIDPLT--GSL 151 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~s------~~g~~l~s~~~dg~v~iwd~~~--~~~ 151 (630)
..+|+.|..+|.|.|||++..+.......+ ...+|..++.- +.|.+++.++.+ ...|.+.- +..
T Consensus 248 ----~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 248 ----RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred ----cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC
Confidence 678999999999999999876532211111 22344444432 234444444443 45565432 112
Q ss_pred eEEeec-CCCCeEEEEEccCCCEEEEeC---------CeEEE-EECCCCceeeEe-ecC-CCC---e---EEEEEeeCCc
Q 006808 152 LGKFRA-STKGISCMAVSSDGKMLATAA---------GQLKT-FNCSDHKKMQKF-SGH-PGA---V---RFMTFSDNGK 212 (630)
Q Consensus 152 ~~~~~~-~~~~v~~l~~~p~~~~l~~~~---------g~i~l-wd~~~~~~~~~~-~~h-~~~---v---~~l~~sp~~~ 212 (630)
...+.. ..+...++.+.+..+.++... ..|.. .|-..|..+... .++ .++ + ..+.-.++.+
T Consensus 322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn 401 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN 401 (463)
T ss_pred CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc
Confidence 221221 234555666666445444433 11111 122334333222 122 111 0 1122245667
Q ss_pred EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC-CCEEEEEecCCcEEEEEcC
Q 006808 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~ 282 (630)
+++..+..-+.+.+||..+... ...+.-...+.++..+. -+ +.+|++-+ |..++||...
T Consensus 402 ~iv~~gd~tn~lil~D~~s~ev-----vQ~l~~~epv~Dicp~~-----~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 402 YIVVVGDSTNELILQDPHSFEV-----VQTLALSEPVLDICPND-----TNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred EEEEecCCcceeEEeccchhhe-----eeecccCcceeecceee-----cCCcchhhhee-cceEEEEecC
Confidence 7777665567899999998763 33444444455544443 33 45565555 4688888653
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.1e-05 Score=78.48 Aligned_cols=199 Identities=11% Similarity=0.074 Sum_probs=137.1
Q ss_pred CcEEEEEeCCCeEEEEEccC--CeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~--~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
..++..++.||.++.|.... +.........|-+.|.+++.+.+|-.+.|.+. |..++++|+.+...+..++...-+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP- 98 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP- 98 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-
Confidence 67899999999999998764 33333344578889999999999998999777 999999999876655443321111
Q ss_pred EEEEEc-cCC---CEEEEeC---CeEEEEECCCCc-eee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC-
Q 006808 163 SCMAVS-SDG---KMLATAA---GQLKTFNCSDHK-KMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV- 232 (630)
Q Consensus 163 ~~l~~~-p~~---~~l~~~~---g~i~lwd~~~~~-~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~- 232 (630)
..+.|. ..| ..++++. +.+.++|-...- ... .-.-|..+|..+.++|.+..+++.. ..|.|.-|.....
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~ 177 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPF 177 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcc
Confidence 122222 222 1444443 899999976543 222 2346899999999999999888766 5789999998741
Q ss_pred ccccceeeeee---------cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 233 KKQSASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 233 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
+.+.....+.+ ........+..|+ |+|..+.+.+.|..|++++.++|+.++...
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEc-----cccCcccccCcccEEEEEEeccchhhhhhh
Confidence 11100011111 2223445566666 999999999999999999999998877654
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.6e-05 Score=72.79 Aligned_cols=244 Identities=12% Similarity=0.072 Sum_probs=150.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCC--C-cEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLK--G-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~--~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.|..-.+++.+++.||.++.|--.. | +.+..+..|.+.+.+++.+-+ +.+
T Consensus 15 v~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d---------------------------g~L 67 (558)
T KOG0882|consen 15 VFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD---------------------------GWL 67 (558)
T ss_pred EeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc---------------------------cee
Confidence 4445567999999999999996432 1 223334444444443333333 556
Q ss_pred EEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC--EEE-EEeCCCcEEEEeCCCCc--eeEEeecCCCCe
Q 006808 89 LVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIY-SAGADGMVCEIDPLTGS--LLGKFRASTKGI 162 (630)
Q Consensus 89 l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~-s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v 162 (630)
+.+.+. |..++++|+.+-..+.-+....-....++..++... .++ +.-.++.+.++|-.... ....-.-|..+|
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV 147 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV 147 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce
Confidence 666555 888999998765543211111111112222233211 233 23367899999966443 223334578899
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCC-Cc-----ee---------eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSD-HK-----KM---------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~-~~-----~~---------~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.++.++|.+..+++.. |.|..|.... .+ .. ..+.-......++.|+|+|..+.+.+ .|+.|+
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR 226 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVR 226 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEE
Confidence 9999999999998887 8999998762 11 11 11222345678999999999999988 699999
Q ss_pred EEEcCCCccccc------------eeeeee----------------cCCceeeeeEEecCCccCCCCCEEEEEecCCcEE
Q 006808 226 LWRTDGVKKQSA------------SCVLAM----------------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (630)
Q Consensus 226 vwd~~~~~~~~~------------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~ 277 (630)
++.+.+++.... ...+.+ .+......-++|. ..|++|+-|+-=| |+
T Consensus 227 ~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd-----es~~flly~t~~g-ik 300 (558)
T KOG0882|consen 227 GFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD-----ESGNFLLYGTILG-IK 300 (558)
T ss_pred EEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc-----CCCCEEEeeccee-EE
Confidence 999998863200 000000 0112222334454 7889999888754 78
Q ss_pred EEEcCCcccccc
Q 006808 278 IWYGQNIEELRN 289 (630)
Q Consensus 278 iwd~~~~~~~~~ 289 (630)
+.++.++...+.
T Consensus 301 vin~~tn~v~ri 312 (558)
T KOG0882|consen 301 VINLDTNTVVRI 312 (558)
T ss_pred EEEeecCeEEEE
Confidence 889888876554
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00014 Score=76.22 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=81.3
Q ss_pred eEECCCCCEEEEeeC----CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 11 TSFSPALDYFAICSG----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 11 ~~fs~dg~~las~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
.+|+|...+||+++- .|.|.||- .+|+...... .....+.++|+|. .
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-------------------~P~hatSLCWHpe---------~ 71 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-------------------YPVHATSLCWHPE---------E 71 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-------------------cceehhhhccChH---------H
Confidence 389999999998873 57777773 4555332111 1234556888875 4
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
-.|+.|-.-|.+.+|...+.+.. ++...|..+|..+.||++|..++++..-|.|.+|.+.
T Consensus 72 ~vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 72 FVLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45677778899999998887765 5556799999999999999999999999999999765
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.06 E-value=0.0013 Score=68.95 Aligned_cols=247 Identities=9% Similarity=0.034 Sum_probs=134.3
Q ss_pred EEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccc--c--ccc-------eeeEEecccc-c---cccccc
Q 006808 20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH--L--SVD-------YTCMKWLSVD-R---KKKRKL 84 (630)
Q Consensus 20 las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~--~~~-------~~~~~w~~~~-~---~~~~~~ 84 (630)
|.+|+..|.++|+-+-+++.+..+.- |+++...|. . +.. ...+.|-... + ....+.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipv---------f~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~y 139 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPV---------FNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTY 139 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeee---------ecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCcc
Confidence 66888899999999999988776542 221111000 0 000 0112332110 1 001112
Q ss_pred CCcEEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEE-------------------EecCCCEEEEEe-CCCcEEE
Q 006808 85 GSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAIS-------------------FATHGSCIYSAG-ADGMVCE 143 (630)
Q Consensus 85 ~~~~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~-------------------~s~~g~~l~s~~-~dg~v~i 143 (630)
.++++++-.. +..|-..++..-++-..+.......+.+++ ++|||+.+...+ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 3667777664 444555555443332111111222222222 344555443222 3456777
Q ss_pred EeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC------------------------------------------CeE
Q 006808 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA------------------------------------------GQL 181 (630)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~------------------------------------------g~i 181 (630)
.|..+.+...++.... ....++++|+|+++++++ +.|
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 7877776666655333 335566777777666553 346
Q ss_pred EEEECCC-----CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc------cceee-eeecCCcee
Q 006808 182 KTFNCSD-----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------SASCV-LAMEHPAVF 249 (630)
Q Consensus 182 ~lwd~~~-----~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~------~~~~~-~~~~~~~~~ 249 (630)
.++|..+ ...+..++ -......+.++|||+++++++..+.++.|.|+.+.+.. ...++ ....- +.-
T Consensus 299 ~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlG 376 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLG 376 (635)
T ss_pred EEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCC
Confidence 6677666 23333333 33456789999999999999877899999999885521 00011 11111 111
Q ss_pred eeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.....|. ++|....+...|..|..||+..
T Consensus 377 PLHTaFD-----g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 PLHTAFD-----GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEC-----CCCCEEEeEeecceeEEEehHH
Confidence 1123344 7888888888899999999865
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.04 E-value=0.00054 Score=71.71 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=72.7
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCC-----CceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce-----
Q 006808 125 FATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK----- 191 (630)
Q Consensus 125 ~s~~g~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~----- 191 (630)
+.++|++.+.+ ++.|.+.|..+ .+.+..+.. ......+.++|||+++++++ ++|.|+|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 34578776653 67899999988 355555553 44568999999999999988 7999999987552
Q ss_pred -------eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 192 -------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 192 -------~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+.+..-.. .....+|.++|....+ -.-|..|..|++..
T Consensus 361 ~~~~~~vvaevevGl-GPLHTaFDg~G~ayts-lf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGL-GPLHTAFDGRGNAYTT-LFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCC-CcceEEECCCCCEEEe-EeecceeEEEehHH
Confidence 22332222 2346789999875444 44689999999876
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=5.9e-05 Score=77.85 Aligned_cols=155 Identities=16% Similarity=0.236 Sum_probs=100.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
-.-+++..+++++.|+.-|.+++|+-..+.... ++.. + ....++....+.. ..+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~---------------~--~~~~~~~~~vs~~--------e~l 90 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE---------------G--ATGITCVRSVSSV--------EYL 90 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhc-cccc---------------C--ccceEEEEEecch--------hHh
Confidence 344788899999999999999999987766432 1110 1 1122233333322 567
Q ss_pred EEEEeCCCeEEEEEccCCee-----eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----ceeEEeecCC
Q 006808 89 LVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----SLLGKFRAST 159 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~ 159 (630)
+++|+..|.|.++.++.+.. +......|...|++++|++++..+++|...|+|..-.+.+. -..+.+-...
T Consensus 91 vAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 91 VAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 88999999999998876432 22222447789999999999999999999999998887762 1122233344
Q ss_pred CCeEEEEEccCCCEEEEeCCeEEEEECCCCc
Q 006808 160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHK 190 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~ 190 (630)
..|-.+.+. ++..|++..-...+++.+.+.
T Consensus 171 s~IVQlD~~-q~~LLVStl~r~~Lc~tE~et 200 (726)
T KOG3621|consen 171 SEIVQLDYL-QSYLLVSTLTRCILCQTEAET 200 (726)
T ss_pred cceEEeecc-cceehHhhhhhhheeecchhH
Confidence 566666554 233333333445566665443
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.99 E-value=2e-06 Score=87.22 Aligned_cols=196 Identities=11% Similarity=0.134 Sum_probs=125.6
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeee-EEccCCCCCCEEEEEEec-CCCEEEEEe----CCCc
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFAT-HGSCIYSAG----ADGM 140 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~-~g~~l~s~~----~dg~ 140 (630)
-+.|++|+.... ..++++|..+|.|.+-..+...-. +.+..+|..+.++++|++ |.++|++|- .|..
T Consensus 58 y~kcva~~y~~d-------~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 58 YVKCVASFYGND-------RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CceeehhhcCCc-------hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 456777766542 467899999999999887654332 455668889999999998 556676662 4568
Q ss_pred EEEEeCCCC--ceeE--Eeec-CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEee-CC
Q 006808 141 VCEIDPLTG--SLLG--KFRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSD-NG 211 (630)
Q Consensus 141 v~iwd~~~~--~~~~--~~~~-~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp-~~ 211 (630)
+.|||+.++ .+.. .|.+ ......+++|..+.+++.+|. ..++++|++... ....+ .+..+..+...| .+
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP 208 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence 999999876 2222 2333 233566889998888888887 689999987432 12222 234566777888 67
Q ss_pred cEEEEEeeCCCeEEEEEc-CCCccccceeeeeecCC-----ceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcC
Q 006808 212 KYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----AVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ 282 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~ 282 (630)
.|+++. .|+.|.+||. +.-+.. ...+.+. .......+.+ .....+++.+. .++|++|++.
T Consensus 209 nY~cs~--~dg~iAiwD~~rnienp----l~~i~~~~N~~~~~l~~~aycP-----trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSN--SDGDIAIWDTYRNIENP----LQIILRNENKKPKQLFALAYCP-----TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceecc--ccCceeeccchhhhccH----HHHHhhCCCCcccceeeEEecc-----CCcchhhhhccCcceEEEeccc
Confidence 787664 4999999993 332221 1111111 1233444433 12345555555 5689999864
No 333
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.96 E-value=0.00054 Score=74.42 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=97.0
Q ss_pred CCEEEEe-eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 17 LDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 17 g~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
.++|+.- .....|+-.|+.+|+.+.++..+.... -..+.|. . +.. .......++|-.+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~------------------~-K~a-qlt~e~tflGls~ 551 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPD------------------S-KFA-QLTNEQTFLGLSD 551 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEeccc------------------c-ccc-ccCCCceEEEECC
Confidence 3444433 346788889999999999998654321 1111111 0 000 0003346888889
Q ss_pred CeEEEEEccCCe--eeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 96 GDVLALAVSAGQ--LKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 96 g~v~iwd~~~~~--~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
..++.||++-.. ++.... .......+|++-+.+| +|+.|+.+|.|++||-...+....+.+.+.+|.+|..+.||
T Consensus 552 n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 552 NSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADG 630 (794)
T ss_pred CceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCC
Confidence 999999998643 321111 1233457788777666 79999999999999943323333466778899999999999
Q ss_pred CEEEEeC-CeEEEEEC
Q 006808 172 KMLATAA-GQLKTFNC 186 (630)
Q Consensus 172 ~~l~~~~-g~i~lwd~ 186 (630)
++|++.+ .-+.+++.
T Consensus 631 kwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 631 KWILATCKTYLLLIDT 646 (794)
T ss_pred cEEEEeecceEEEEEE
Confidence 9998887 67777765
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0096 Score=61.03 Aligned_cols=189 Identities=14% Similarity=0.154 Sum_probs=128.6
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
..+....++.|.+.|..+.........+. ....++++|+++.++.+.. ++++.+.|-.+++.+.+......+ ..
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~ 164 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG 164 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence 34444456789999988887776665454 6788999999988887765 689999999999888885544445 88
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceee-E----eecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCCCcc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-K----FSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKK 234 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~-~----~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~~~~ 234 (630)
++++|+|..++.+. +.|.++|..+....+ . ... ......+.++|+|.++.+....+ +.+...|..++..
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 99999999777665 899999976655442 1 111 22346789999999777765333 5788888877653
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCcccccc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRN 289 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~ 289 (630)
.. ........ ........ |+|.++.+... .+.+.+-|..+......
T Consensus 244 ~~--~~~~~~~~--~~~~v~~~-----p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 244 TA--TDLPVGSG--APRGVAVD-----PAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EE--eccccccC--CCCceeEC-----CCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 30 00111111 12223343 89998888744 57888888877655443
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.95 E-value=0.00091 Score=72.75 Aligned_cols=141 Identities=17% Similarity=0.327 Sum_probs=96.9
Q ss_pred CcEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCc--eeEE-e-
Q 006808 86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGS--LLGK-F- 155 (630)
Q Consensus 86 ~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-----~g~~l~s~~~dg~v~iwd~~~~~--~~~~-~- 155 (630)
..+|+.-- ....|+-.|+.+|+.+.........+|..++-.. +....+.|-.+..+..||.+-.. ++.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 34444433 3456999999999998777544444566664421 12345666677889999988532 2221 1
Q ss_pred -ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 156 -~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
.......+|++-+.+| +||+|+ |.||+||--..+....+++-..||.+|..+.||++++++| +.+|.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 1234477888888888 556666 9999999533333445677789999999999999999987 678888886
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.90 E-value=0.011 Score=63.17 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=90.7
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC---
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--- 94 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--- 94 (630)
..++.++.|+.|.-.|..+|+.+..+............+++ +.. +..+++++.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP------------~v~------------~g~Vivg~~~~~ 176 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP------------LVV------------KGKVITGISGGE 176 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCc------------EEE------------CCEEEEeecccc
Confidence 45677778999999999999998765421110000000000 000 334566543
Q ss_pred ---CCeEEEEEccCCeeeEEccCCCCC------------------------------CEE-EEEEecCCCEEEEEeCC--
Q 006808 95 ---GGDVLALAVSAGQLKWRLSDCHPG------------------------------GVS-AISFATHGSCIYSAGAD-- 138 (630)
Q Consensus 95 ---~g~v~iwd~~~~~~~~~~~~~h~~------------------------------~v~-~~~~s~~g~~l~s~~~d-- 138 (630)
+|.|.-+|..+|+.++++...... .+. .+++.|...+++.+..+
T Consensus 177 ~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~ 256 (527)
T TIGR03075 177 FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPS 256 (527)
T ss_pred cCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCC
Confidence 678999999999988765422111 111 33566656666655422
Q ss_pred ---C-----------cEEEEeCCCCceeEEeecCCCCe---------EEEEEccCCC---EEEEeC--CeEEEEECCCCc
Q 006808 139 ---G-----------MVCEIDPLTGSLLGKFRASTKGI---------SCMAVSSDGK---MLATAA--GQLKTFNCSDHK 190 (630)
Q Consensus 139 ---g-----------~v~iwd~~~~~~~~~~~~~~~~v---------~~l~~~p~~~---~l~~~~--g~i~lwd~~~~~ 190 (630)
+ .|.-.|+++|+..-.|+.....+ .-+.+..+|+ .++.+. |.++++|..+|+
T Consensus 257 p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 257 PWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred CCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 2 57778999999888777533222 1223334665 555666 899999999998
Q ss_pred ee
Q 006808 191 KM 192 (630)
Q Consensus 191 ~~ 192 (630)
.+
T Consensus 337 ~i 338 (527)
T TIGR03075 337 LL 338 (527)
T ss_pred ee
Confidence 75
No 337
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.0021 Score=62.98 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=115.8
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC-----CC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~ 160 (630)
+.++.+--..+.|.-|+..+++.. .+ .+.+.+.++..-..+..|+++.. -+.+++..++..+..+... ..
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~-~~--~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~ 111 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKR-VF--PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLN 111 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceE-EE--ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcC
Confidence 345556666778999999877553 22 13344555555555556666633 3667777666553333211 13
Q ss_pred CeEEEEEccCCCEEEEeC-------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 161 GISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
..+.+.+.|+|.+.++.. |.++.++. .+..++.+..+-..-+.|+||||++.|+.+-+..+.|.-|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 556788899998777532 34555554 4566666666556668899999999998887666888888
Q ss_pred EcCC--CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-cEEEEEcCCcccccccCce
Q 006808 228 RTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 228 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~ 293 (630)
++.. +...................-++.. .+|.+-+++...| .|.+|+.+ |+.+....-+
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-----adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-----ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEe-----CCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 8763 1111111111111122222333333 5666665444444 89999987 8777665544
No 338
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.87 E-value=0.028 Score=58.69 Aligned_cols=194 Identities=12% Similarity=0.146 Sum_probs=107.2
Q ss_pred EeEECCCCCEEEEe-eCC----CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAIC-SGD----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~-s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
..++||||+++|.+ +.. .+|+|+|+.+|+.+...- .......+.|.+.+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~------- 181 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDG------- 181 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTS-------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCC-------
Confidence 35899999999865 333 359999999997764321 01112237777653
Q ss_pred CCcEEEEEeCC----------CeEEEEEccCCeee--EEccCCCCCC-EEEEEEecCCCEEEEEe-C--C-CcEEEEeCC
Q 006808 85 GSSLLVLGTGG----------GDVLALAVSAGQLK--WRLSDCHPGG-VSAISFATHGSCIYSAG-A--D-GMVCEIDPL 147 (630)
Q Consensus 85 ~~~~l~~~~~~----------g~v~iwd~~~~~~~--~~~~~~h~~~-v~~~~~s~~g~~l~s~~-~--d-g~v~iwd~~ 147 (630)
..++++.... ..|+.|.+.++... ..+....... ...+..++++++++..+ . + ..+.+.|+.
T Consensus 182 -~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 182 -KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp -SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred -CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 3344444333 12788888776432 1222222223 67889999999966543 2 2 357888887
Q ss_pred CC----ceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEE
Q 006808 148 TG----SLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 148 ~~----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
.+ .....+......+....-+..+.+++... +.|...++.+... ...+..|...+.-..+...+.+|+
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 64 23333433344443333333555555443 5777788877652 224555655433344445566677
Q ss_pred EEeeCCC--eEEEEEcC
Q 006808 216 SSAVGER--YIALWRTD 230 (630)
Q Consensus 216 ~~~~~d~--~i~vwd~~ 230 (630)
..-..++ .|+++++.
T Consensus 341 l~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 341 LSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEETTEEEEEEEETT
T ss_pred EEEEECCccEEEEEECC
Confidence 6655455 68889988
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.00081 Score=69.11 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=87.7
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCc--EEEEeCCCCceeEEeecCCCCeEEEEEccCCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 172 (630)
..+.++++.+++...... ..+.-...+|+|||+.++ +...||. |.+.|+..++..+ +....+.-..-.|+|+|+
T Consensus 218 ~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCC
Confidence 469999999887643332 234445678999999865 4456664 5666777666333 443333334678999999
Q ss_pred EEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCe--EEEEEcCCCc
Q 006808 173 MLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVK 233 (630)
Q Consensus 173 ~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~--i~vwd~~~~~ 233 (630)
.++..+ | .|.+++...+.. ..+....+.-..-.|+|+|++++..+..+|. |.+.++.++.
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 999887 3 788888877654 3343333333367899999999988744454 5555554443
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=7e-05 Score=72.07 Aligned_cols=152 Identities=13% Similarity=0.154 Sum_probs=99.6
Q ss_pred EEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEE
Q 006808 98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 176 (630)
|++.+..+-+.. .+..+|...|.+++|+|..+ ++..++.+.+|++.|+++..++..+..+ ..+.+++|.-+...++.
T Consensus 175 v~~l~~~~fkss-q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSS-QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchh-hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 555555444443 35567888999999999766 6888999999999999999999988877 78999999987665555
Q ss_pred eC---CeEEEEECCCCc-eeeEeec--CCCCeEEEEE------eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 177 AA---GQLKTFNCSDHK-KMQKFSG--HPGAVRFMTF------SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 177 ~~---g~i~lwd~~~~~-~~~~~~~--h~~~v~~l~~------sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
++ |.|++||++..+ .+..+.+ ...+|..++. .+.|.+++ +++. .+..|.+.....- ..++...+
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv-~~lt--~l~f~ei~~s~~~-~p~vlele 328 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLV-FALT--VLQFYEIVFSAEC-LPCVLELE 328 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEE-eeeh--hhhhhhhhccccC-CCcccccC
Confidence 55 999999998754 2333322 1234444332 23343443 3322 3567776543321 23555666
Q ss_pred CCceeeeeEEe
Q 006808 245 HPAVFMDCRCI 255 (630)
Q Consensus 245 ~~~~~~~~~~~ 255 (630)
.++.++.....
T Consensus 329 ~pG~cismqy~ 339 (463)
T KOG1645|consen 329 PPGICISMQYH 339 (463)
T ss_pred CCcceeeeeec
Confidence 66666665554
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.86 E-value=3.7e-06 Score=85.24 Aligned_cols=192 Identities=10% Similarity=0.117 Sum_probs=123.4
Q ss_pred ECCCCCEEEEeeCCCcEEEEECCCCcEE-EEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 13 FSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 13 fs~dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+..+...++.|..+|.|.+-......-. +++ .| ++ ...+++++|++.+ .+.|++
T Consensus 66 y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~------------tp----~~-ar~Ct~lAwneLD--------tn~LAa 120 (783)
T KOG1008|consen 66 YGNDRCILAVGSATGNISLLSVRHPHDSSAEV------------TP----GY-ARPCTSLAWNELD--------TNHLAA 120 (783)
T ss_pred cCCchhhhhhccccCceEEeecCCccccccee------------cc----cc-ccccccccccccc--------HHHHHh
Confidence 3344458889999999998876543221 111 11 22 4578999999886 456666
Q ss_pred EeC----CCeEEEEEccCC--ee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeecCCCCe
Q 006808 92 GTG----GGDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGI 162 (630)
Q Consensus 92 ~~~----~g~v~iwd~~~~--~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v 162 (630)
|-. +..+.|||+.++ .+ -..+..+.-....+++|-.+.+.+.+|.....+.++|++... ....+ ....+
T Consensus 121 gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~v 198 (783)
T KOG1008|consen 121 GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYV 198 (783)
T ss_pred hhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhc
Confidence 643 334999999877 21 122222233456688998888889999999899999987321 11112 23356
Q ss_pred EEEEEcc-CCCEEEEeC-CeEEEEE-CCCCc-eeeEeecCC----CCeEEEEEeeCCcE-EEEEeeCCCeEEEEEcCC
Q 006808 163 SCMAVSS-DGKMLATAA-GQLKTFN-CSDHK-KMQKFSGHP----GAVRFMTFSDNGKY-VLSSAVGERYIALWRTDG 231 (630)
Q Consensus 163 ~~l~~~p-~~~~l~~~~-g~i~lwd-~~~~~-~~~~~~~h~----~~v~~l~~sp~~~~-l~~~~~~d~~i~vwd~~~ 231 (630)
..+.+.| .+.++++-. |.|-+|| ..+-+ ++..+...+ ..+..++|.|...- +++.....++|+++++..
T Consensus 199 qG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6788888 778888877 9999999 43322 222222122 24889999996543 444443457899999864
No 342
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.83 E-value=0.005 Score=68.05 Aligned_cols=200 Identities=13% Similarity=0.207 Sum_probs=122.7
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
..+..+.+... ...+++++..|.|.+.|+.+.... +...-..+|.+++|+||+..++..+..+++.+-+
T Consensus 69 ~~i~s~~fl~d---------~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFLAD---------TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred cceEEEEEecc---------cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 34555666554 566899999999999998887652 2223457899999999999998888877776653
Q ss_pred C----CC-------------------CceeEEeecCC---------------------CCeEEEEEccCCCEEEEeC---
Q 006808 146 P----LT-------------------GSLLGKFRAST---------------------KGISCMAVSSDGKMLATAA--- 178 (630)
Q Consensus 146 ~----~~-------------------~~~~~~~~~~~---------------------~~v~~l~~~p~~~~l~~~~--- 178 (630)
- -. |+....|++.. ..=.++.|.-||.++|+..
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 2 11 11111222111 1123589999999999843
Q ss_pred ----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee--CCCeEEEEEcCCCccccceeeeeecCCceeeee
Q 006808 179 ----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (630)
Q Consensus 179 ----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (630)
..|++||-. |..-.+-....+.-.+++|-|.|..+++... .|+.|.+|.-..-... ......+.....+.-
T Consensus 218 ~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg--~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG--EFVLPFPLDEKEVEE 294 (1265)
T ss_pred cCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc--ccccCCcccccchhe
Confidence 589999976 5432211122334467899999998887432 2457888876554322 111222222222444
Q ss_pred EEecCCccCCCCCEEEE---EecCCcEEEEEcCCc
Q 006808 253 RCIDNGGVDDAGLYVLA---ISETGVCYIWYGQNI 284 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s---~s~dg~i~iwd~~~~ 284 (630)
++|+ .++..|++ ......|++|-..+.
T Consensus 295 L~Wn-----s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 295 LAWN-----SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeec-----CCCCceeeeecccccceEEEEEecCe
Confidence 5555 57777776 333335999976543
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.83 E-value=0.015 Score=56.90 Aligned_cols=232 Identities=11% Similarity=0.078 Sum_probs=124.3
Q ss_pred CCCCCEEEEeeCCCcEEEEECC-CCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE
Q 006808 14 SPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (630)
...++.|+.|..+| +.+++.. .......... ..+..+.-.+. -+. +..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--------------------~~I~ql~vl~~---------~~~-llv 52 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--------------------SSITQLSVLPE---------LNL-LLV 52 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeec--------------------ceEEEEEEecc---------cCE-EEE
Confidence 34678999998888 8999983 2222222110 01333333332 222 333
Q ss_pred eCCCeEEEEEccCCeeeEEc-------------cCCCCCCEEEEE--EecCCCEEEEEeCCCcEEEEeCCCC-----cee
Q 006808 93 TGGGDVLALAVSAGQLKWRL-------------SDCHPGGVSAIS--FATHGSCIYSAGADGMVCEIDPLTG-----SLL 152 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~~~~~~-------------~~~h~~~v~~~~--~s~~g~~l~s~~~dg~v~iwd~~~~-----~~~ 152 (630)
-.|+.+.++++..-...... .......+..++ -...+...+++....+|.+|..... +..
T Consensus 53 Lsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 53 LSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred EcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence 34599999998754433210 112334455555 1223444444445558888876542 455
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecC------------CCCeEEEEEeeCCcEEEEEee
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+.+.. ...+.+++|. ++.++.|. +...+.|+.++.....+... ..++..+.. +++.+|++.
T Consensus 133 ke~~l-p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-- 206 (275)
T PF00780_consen 133 KEISL-PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-- 206 (275)
T ss_pred EEEEc-CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence 55664 3677899998 45677765 78999999977654333211 123333333 445666542
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEE
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (630)
+..-.+.+... +.. ......... ........ ..||++.+.+ .|.||++.+++.++........
T Consensus 207 -~~~g~fv~~~G-~~~-r~~~i~W~~--~p~~~~~~--------~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 207 -DNIGVFVNKNG-EPS-RKSTIQWSS--APQSVAYS--------SPYLIAFSSN-SIEVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred -cceEEEEcCCC-CcC-cccEEEcCC--chhEEEEE--------CCEEEEECCC-EEEEEECcCCcEEEEEECCCEE
Confidence 44444444433 222 112223322 22233333 3577777664 5999999999887766544433
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.82 E-value=0.00039 Score=70.94 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=62.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| +|++++|+.+.|+.|+.||.|.+||..++..... + .....+.++|+|.
T Consensus 259 ~s~v--~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-------------------a~~~P~~iaWHp~------ 310 (545)
T PF11768_consen 259 PSQV--ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-------------------AEFIPTLIAWHPD------ 310 (545)
T ss_pred CCcc--eEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-------------------ecccceEEEEcCC------
Confidence 3566 7889999999999999999999999877643321 1 1234568889886
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEcc
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS 113 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~ 113 (630)
+.++++|+..|.+.+||+.-+.....+.
T Consensus 311 ---gai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 311 ---GAIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred ---CcEEEEEcCCceEEEEEeecCccceeec
Confidence 7889999999999999998765544443
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.82 E-value=0.00014 Score=74.13 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=68.4
Q ss_pred EEEEEccCCeee--EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEE
Q 006808 98 VLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (630)
Q Consensus 98 v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 175 (630)
-++|++..++.. ........+.|.+++++|+...++.|+.||.|.+||...+... +....-.++.++|+|+|.+++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 346666554321 1111246788999999999999999999999999998766332 222344678999999999999
Q ss_pred EeC--CeEEEEECCCCc
Q 006808 176 TAA--GQLKTFNCSDHK 190 (630)
Q Consensus 176 ~~~--g~i~lwd~~~~~ 190 (630)
+|+ |.+.+||+.-..
T Consensus 316 V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCceEEEEEeecCc
Confidence 998 999999986544
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.80 E-value=0.0086 Score=63.67 Aligned_cols=195 Identities=13% Similarity=0.199 Sum_probs=114.3
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC-cEEEEEeCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS-SLLVLGTGG 95 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~l~~~~~~ 95 (630)
+..+..++.++.|.-.|..+|+.+..+......... .+. ..... ...+ + ..+++++.+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~---~~~----~~~~g--~~~~------------~~~~V~v~~~~ 119 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRG---CCD----VVNRG--VAYW------------DPRKVFFGTFD 119 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcccc---ccc----cccCC--cEEc------------cCCeEEEecCC
Confidence 345666777899999999999988776532210000 000 00000 0000 3 678899999
Q ss_pred CeEEEEEccCCeeeEEccCCCCC----CEE-EEEEecCCCEEEEEe---------CCCcEEEEeCCCCceeEEeecCCCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPG----GVS-AISFATHGSCIYSAG---------ADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~----~v~-~~~~s~~g~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
|.|.-+|..+|+.++++...... .+. +..+. +..++.++ .++.+..+|..+|+.+-.+......
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 99999999999998877532110 011 11222 24455553 3678999999999988776542110
Q ss_pred --------------------e-EEEEEccCCCEEEEeC--C------------------eEEEEECCCCceeeEeec--C
Q 006808 162 --------------------I-SCMAVSSDGKMLATAA--G------------------QLKTFNCSDHKKMQKFSG--H 198 (630)
Q Consensus 162 --------------------v-~~l~~~p~~~~l~~~~--g------------------~i~lwd~~~~~~~~~~~~--h 198 (630)
+ ...++.+.+..+++++ + .|.-+|..+|+.+-.+.. |
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 1 1234454455666654 3 699999999998776542 2
Q ss_pred CC----CeEEEEEe----eCCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 199 PG----AVRFMTFS----DNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 199 ~~----~v~~l~~s----p~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.. ......+. -++. .+++++ .+|.+...|..+++..
T Consensus 278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~ 324 (488)
T cd00216 278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLI 324 (488)
T ss_pred CCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEe
Confidence 11 00111111 1232 455554 6899999999998855
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.00072 Score=69.47 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=108.5
Q ss_pred eEeEECCCCCEEEEeeC---C-CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 9 ILTSFSPALDYFAICSG---D-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~---d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+.-+|+|++..++..+- . ..+.++++.+++...... ..+......|+|+ .
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspD------------------G------- 249 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPD------------------G------- 249 (425)
T ss_pred eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCC------------------C-------
Confidence 45589999988776532 2 358899998887654433 1122222333333 1
Q ss_pred CCcEEEEEeCCCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCc--EEEEeCCCCceeEEeecCC
Q 006808 85 GSSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGM--VCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 85 ~~~~l~~~~~~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~ 159 (630)
..++++...+|. |+++|+.++... ++. .-.+.-+.-.|+|+|+.++-.+ ..|. |.+.++..+.. ..+....
T Consensus 250 -~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~ 325 (425)
T COG0823 250 -SKLAFSSSRDGSPDIYLMDLDGKNLP-RLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG 325 (425)
T ss_pred -CEEEEEECCCCCccEEEEcCCCCcce-ecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC
Confidence 344555666676 788888887743 332 2223334678999999976554 4554 55566665544 3333233
Q ss_pred CCeEEEEEccCCCEEEEeC---Ce--EEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 160 KGISCMAVSSDGKMLATAA---GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
..-..-.|+|+|++++..+ |. |.+.|+.++..++.+. +......-.|.|+++.++..+
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 3223778999999998876 43 6777776665444333 333444557788888777655
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.78 E-value=0.01 Score=59.50 Aligned_cols=179 Identities=18% Similarity=0.168 Sum_probs=102.7
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC---------C-C
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---------G-G 96 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---------~-g 96 (630)
..|++.|..+.+.+..+.-. ....++++.-........ ....+|++|+. . |
T Consensus 2 s~i~l~d~~~~~~~~~~~l~-----------------~~E~~~s~~~~~l~~~~~--~~~~~ivVGT~~~~~~~~~~~~G 62 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE-----------------PNEHVTSLCSVKLKGDST--GKKEYIVVGTAFNYGEDPEPSSG 62 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE-----------------TTEEEEEEEEEEETTS-----SSEEEEEEEEE--TTSSS-S-E
T ss_pred cEEEEEeCCCCeEEEEEECC-----------------CCceEEEEEEEEEcCccc--cccCEEEEEecccccccccccCc
Confidence 35788888888777655411 122233333222221100 01567888876 2 8
Q ss_pred eEEEEEccCC-----eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeec-CCCCeEEEEEcc
Q 006808 97 DVLALAVSAG-----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA-STKGISCMAVSS 169 (630)
Q Consensus 97 ~v~iwd~~~~-----~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~-~~~~v~~l~~~p 169 (630)
.|.++++... +..........++|++++-- +| +|+++ ..+.|.+|++...+ ....-.. ....+.++...
T Consensus 63 ri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~- 138 (321)
T PF03178_consen 63 RILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF- 138 (321)
T ss_dssp EEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred EEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence 8999999884 32222222456889999876 34 44444 35789999998777 4333221 22255555554
Q ss_pred CCCEEEEeC--CeEEEE--ECCCCceeeEee--cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 170 DGKMLATAA--GQLKTF--NCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lw--d~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+.++++|+ ..+.++ +....+ +..+. .....++++.|-+++..++++. .+|.+.++....
T Consensus 139 -~~~I~vgD~~~sv~~~~~~~~~~~-l~~va~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 -KNYILVGDAMKSVSLLRYDEENNK-LILVARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNP 203 (321)
T ss_dssp -TTEEEEEESSSSEEEEEEETTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-S
T ss_pred -ccEEEEEEcccCEEEEEEEccCCE-EEEEEecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECC
Confidence 56888887 666655 542222 22222 2345688999987777666665 699999998764
No 349
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0016 Score=69.15 Aligned_cols=186 Identities=17% Similarity=0.251 Sum_probs=114.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC-EEEEEEecCCCEEEEEeCCC-----cEEEEeCCC------Ccee-
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAGADG-----MVCEIDPLT------GSLL- 152 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~~~dg-----~v~iwd~~~------~~~~- 152 (630)
+..++.|+.+|.|.+++-.-. ....+ .++... |..+....+.++|++.+.|+ .+++|++.. .+++
T Consensus 35 ~~~vvigt~~G~V~~Ln~s~~-~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSSFQ-LIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CceEEEeeccccEEEecccce-eeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 678999999999988874322 11222 345555 44444433446788877664 599999863 2344
Q ss_pred --EEee----cCCCCeEEEEEccCCCEEEEeC--CeEEEEEC--CCCceeeEe--ecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 153 --GKFR----ASTKGISCMAVSSDGKMLATAA--GQLKTFNC--SDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 153 --~~~~----~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~--~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
+.+. ....++.+++++.+-+.+|+|- |.|..+.- ...+-.+.- .....+|++++|..+++.++.+. .
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-T 191 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-T 191 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-e
Confidence 2222 1245889999999988888886 88887742 111111222 22356999999998887722222 2
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
-..|.+|.+.... + ....+.+++....|..++ +....+++++. ..+.+|+.+..
T Consensus 192 t~~V~~y~l~gr~-p---~~~~ld~~G~~lnCss~~-----~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 192 TEQVMLYSLSGRT-P---SLKVLDNNGISLNCSSFS-----DGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred cceeEEEEecCCC-c---ceeeeccCCccceeeecC-----CCCccEEEecC-ceEEEEcCCCc
Confidence 4479999998443 2 234466777777888776 33332444333 47899987643
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.76 E-value=0.032 Score=54.36 Aligned_cols=194 Identities=13% Similarity=0.176 Sum_probs=121.3
Q ss_pred eEECCCCCEEEEeeC--CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 11 ~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|.||++++.... -..|.|-|+..++.+.++..+. |..-.|.. +.-
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----------------------C~~iyP~~--------~~~ 149 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----------------------CWLIYPSG--------NRG 149 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----------------------EEEEEEEE--------TTE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----------------------EEEEEecC--------CCc
Confidence 388999998887653 5679999999999888775211 22223332 345
Q ss_pred EEEEeCCCeEEEEEcc-CCeeeE---EccCCCCCCEE-EEEEecCCCEEEEEeCCCcEEEEeCCCCce--eEEeecC---
Q 006808 89 LVLGTGGGDVLALAVS-AGQLKW---RLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFRAS--- 158 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~-~~~~~~---~~~~~h~~~v~-~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~--- 158 (630)
+.+-|.||.+.-..+. .|+... .++.....++. .-++...+..++-.+..|.|+-.|+..... ...+...
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcc
Confidence 8899999998888886 444321 22222223332 334555555666677899999888765432 2222211
Q ss_pred -------CCCeEEEEEccCCCEEEEeC------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCc-EEEEEe
Q 006808 159 -------TKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSA 218 (630)
Q Consensus 159 -------~~~v~~l~~~p~~~~l~~~~------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~~~~ 218 (630)
.+.-.-+++++....|.+.. ..|.+||+.+++.+.++.. ..++.+|..+.+.+ +|++.+
T Consensus 230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~ 308 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALS 308 (342)
T ss_dssp HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEE
T ss_pred ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEc
Confidence 12334577877555554432 2789999999999988873 34678999998776 555544
Q ss_pred eCCCeEEEEEcCCCccc
Q 006808 219 VGERYIALWRTDGVKKQ 235 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~ 235 (630)
..++.|.+||..+++..
T Consensus 309 ~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 309 AGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTTEEEEEETTT--EE
T ss_pred CCCCeEEEEeCcCCcEE
Confidence 45789999999998754
No 351
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.76 E-value=0.02 Score=56.84 Aligned_cols=191 Identities=12% Similarity=0.038 Sum_probs=100.6
Q ss_pred CcEEEEEeCCCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
..+|+.+..+|. +.+.|+.+++.. ++..+-.....+..++|+.+.++-......++..|+.+.+....+......+-
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred CEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence 345555555655 888899998876 33332222233566778888876665667899999999887666666666554
Q ss_pred EEEE--ccCCCEEEEeC------------------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 164 CMAV--SSDGKMLATAA------------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 164 ~l~~--~p~~~~l~~~~------------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
...| +.++..++..- ..|.-.|+.+|+....+. -...+..+.|+|....+++-
T Consensus 127 ~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 127 YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEE
T ss_pred ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEE
Confidence 4555 34666655431 136667888887544443 45678899999987777776
Q ss_pred eeCCC-----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-----CCcEEEEEcCCccc
Q 006808 218 AVGER-----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEE 286 (630)
Q Consensus 218 ~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~ 286 (630)
|- .| .-+||-+++..... ..+... .....+.--+|. |||..|.--+. +..|.-+|..+++.
T Consensus 206 CH-EGpw~~Vd~RiW~i~~dg~~~-~~v~~~-~~~e~~gHEfw~-----~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 206 CH-EGPWDLVDQRIWTINTDGSNV-KKVHRR-MEGESVGHEFWV-----PDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EE--S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE------TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred ec-cCCcceeceEEEEEEcCCCcc-eeeecC-CCCccccccccc-----CCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 53 33 13667665443221 122221 234555555665 89987765433 22456667777643
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.66 E-value=0.013 Score=59.84 Aligned_cols=216 Identities=14% Similarity=0.178 Sum_probs=112.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE--Eeccc-------------ccccccc----------cccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADI-------------ASTETTS----------LYGNRLEREH 63 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~-------------~~~~~~~----------~~s~~~~~~~ 63 (630)
..+.|+++.--||+|-..|.|.||.+...+... ..... .+....+ .|.|...-.-
T Consensus 5 ~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~ 84 (395)
T PF08596_consen 5 THVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDA 84 (395)
T ss_dssp EEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE--
T ss_pred EEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheec
Confidence 455999998899999999999999876443221 00000 0000000 0111000000
Q ss_pred cccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEcc-------CCCCCCEEEEEEec-----CC--
Q 006808 64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-------DCHPGGVSAISFAT-----HG-- 129 (630)
Q Consensus 64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-------~~h~~~v~~~~~s~-----~g-- 129 (630)
....+++++-. +-.++++|..+|.+.|.|++....+..-. ......|+++.|.- |+
T Consensus 85 ~~g~vtal~~S----------~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 85 KQGPVTALKNS----------DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp -S-SEEEEEE-----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred cCCcEeEEecC----------CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 02234444432 26789999999999999998887765421 12345688898863 33
Q ss_pred -CEEEEEeCCCcEEEEeCCC---Cce----eEEeecCCCCeEEEE-EccC---------------------CCEEEEeC-
Q 006808 130 -SCIYSAGADGMVCEIDPLT---GSL----LGKFRASTKGISCMA-VSSD---------------------GKMLATAA- 178 (630)
Q Consensus 130 -~~l~s~~~dg~v~iwd~~~---~~~----~~~~~~~~~~v~~l~-~~p~---------------------~~~l~~~~- 178 (630)
-.+++|...|.+.+|.+.- +.- ......+.++|..+. |+.+ ..++++++
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 3588999999999998741 111 111223445555544 3211 12455555
Q ss_pred CeEEEEECCCCceeeEeecCCCCeEEEEEe-----eCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----DNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 179 g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-----p~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
..++++...+.+...........+..+.+- ..+..|++-. .+|.|++|.+..-+..
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEI 295 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHh
Confidence 899999998877654443232334445553 2445555555 6999999999987754
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.018 Score=59.01 Aligned_cols=193 Identities=12% Similarity=0.140 Sum_probs=131.0
Q ss_pred EeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++++.+. .+++...++.|.+.|..+........... . ...+++.+. +..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~------------------P~~~~~~~~---------~~~ 129 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-G------------------PVGLAVDPD---------GKY 129 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-C------------------CceEEECCC---------CCE
Confidence 347888887 44455556899999987777666543211 1 122333333 444
Q ss_pred EEEEeC---CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeE-E----eecCC
Q 006808 89 LVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-K----FRAST 159 (630)
Q Consensus 89 l~~~~~---~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~-~----~~~~~ 159 (630)
++++.. ++.+.+.|..++........+. .+ ..+++.|+|+.++.+. .++.|.+.|.......+ . .. ..
T Consensus 130 vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~ 206 (381)
T COG3391 130 VYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VG 206 (381)
T ss_pred EEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cC
Confidence 555554 5779999999998887755443 33 8999999999776665 78899999977665553 1 22 12
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.....+.++|+|.++.+.. +.+...|..++..... ..........+.++|+|.++.+.-+..+.+.+.|..+..
T Consensus 207 ~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 207 TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 2346789999999776664 3788889888876554 221111456789999999988886556788888887765
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.65 E-value=0.019 Score=57.02 Aligned_cols=194 Identities=11% Similarity=0.124 Sum_probs=92.2
Q ss_pred EECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 12 SFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 12 ~fs~dg~~las~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+|.+||+.|+.++. || .+.+.|+.+++..+--.+..........+++ .+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~---------------------------~~~ 94 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD---------------------------DRA 94 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT---------------------------SSE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC---------------------------CCe
Confidence 68889987777665 44 5666788888765432221111111222221 344
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEEe---CC-------------------CcEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAG---AD-------------------GMVCEI 144 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~---~d-------------------g~v~iw 144 (630)
++....+..|.-.|+.+.+....+ ......+-...|. .++..++-.- .| +.|...
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 555555667888898887753222 2233444445553 3555543221 11 346666
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccC-CCEEEEeC-C-----eEEEEECCC-CceeeEeecCC--CCeEEEEEeeCCcEE
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSD-GKMLATAA-G-----QLKTFNCSD-HKKMQKFSGHP--GAVRFMTFSDNGKYV 214 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~-~~~l~~~~-g-----~i~lwd~~~-~~~~~~~~~h~--~~v~~l~~sp~~~~l 214 (630)
|+.+|+....+. ....+..+.|+|. ..+|+.|- | .-+||-+++ +...+.+..+. ..+..=-|.|+|..+
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 888887655555 4557788999994 45555554 2 236665543 33333333232 234455789999877
Q ss_pred EEEee----CCCeEEEEEcCCCcc
Q 006808 215 LSSAV----GERYIALWRTDGVKK 234 (630)
Q Consensus 215 ~~~~~----~d~~i~vwd~~~~~~ 234 (630)
..-+. .+..|.-+++.+++.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--E
T ss_pred EEEeecCCCCceEEEeeCCCCCCc
Confidence 66432 244677777877653
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00046 Score=71.52 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=84.2
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE-EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee
Q 006808 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM 192 (630)
Q Consensus 116 h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~ 192 (630)
|...|.=-++...+++++.|+.-|.+++|+-..++... +..+..+.+..+.++++..++|.|+ |.|.++-+..+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34445555566678899999999999999966655432 2223444666777888888888877 88888887764321
Q ss_pred -----eEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 193 -----QKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 193 -----~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..+ ..|...|++++|++++..+++|. ..|+|..-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-SQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecC-CCceEEEEEech
Confidence 111 24678999999999999999987 488888888777
No 356
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.00041 Score=72.94 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=81.0
Q ss_pred EEEEEecCCCEEEEEe----CCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE
Q 006808 121 SAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 121 ~~~~~s~~g~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~ 194 (630)
+-..|+|...+|+.++ ..|.|.||- .+|++.+...- .-.+++++|+|..-.|+.|- |.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 4457888888887775 567888885 56665433221 12356799999877777775 8999999877665555
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
...|+.+|..+.|||+|..++++. .-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence 567999999999999999999876 57899999876
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.49 E-value=0.093 Score=49.65 Aligned_cols=186 Identities=11% Similarity=0.143 Sum_probs=96.5
Q ss_pred eEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++|+|+.. ++|+....+.|..++. +|+.+..+.-. + ..+.-.+++.- +..+
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~---------------g--~~D~EgI~y~g----------~~~~ 78 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD---------------G--FGDYEGITYLG----------NGRY 78 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S---------------S---SSEEEEEE-S----------TTEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC---------------C--CCCceeEEEEC----------CCEE
Confidence 39999765 5556666788888886 58887776521 1 11333444432 3344
Q ss_pred EEEe-CCCeEEEEEccCCe----e--eE--E--ccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC---CceeEE-
Q 006808 90 VLGT-GGGDVLALAVSAGQ----L--KW--R--LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---GSLLGK- 154 (630)
Q Consensus 90 ~~~~-~~g~v~iwd~~~~~----~--~~--~--~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~---~~~~~~- 154 (630)
++.. .++.+.++++.... . .. . +...+...+-+++|.|.++.|+.+-...-..++.+.. ...+..
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 5555 47888888883321 1 11 1 1123556799999999888888776665555665543 111111
Q ss_pred ----e---ecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCCCceeeEeecCC---------CCeEEEEEeeCCcEEE
Q 006808 155 ----F---RASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYVL 215 (630)
Q Consensus 155 ----~---~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~l~ 215 (630)
+ ......+.+++++|.. .+++... ..|..+| .+|+.+..+.-.. ...-.|+|.++|+..+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 1123467899999954 4455544 7888999 6777665553211 2467899999997655
Q ss_pred EEeeCCCeEEEE
Q 006808 216 SSAVGERYIALW 227 (630)
Q Consensus 216 ~~~~~d~~i~vw 227 (630)
+ + +-+..++|
T Consensus 238 v-s-EpNlfy~f 247 (248)
T PF06977_consen 238 V-S-EPNLFYRF 247 (248)
T ss_dssp E-E-TTTEEEEE
T ss_pred E-c-CCceEEEe
Confidence 4 4 45555443
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.47 E-value=0.013 Score=58.74 Aligned_cols=175 Identities=10% Similarity=0.107 Sum_probs=99.4
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEec---C----CCEEEEEeC----------CCcEEEEeCCCC----ceeEEe
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFAT---H----GSCIYSAGA----------DGMVCEIDPLTG----SLLGKF 155 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~---~----g~~l~s~~~----------dg~v~iwd~~~~----~~~~~~ 155 (630)
.|++.|..+.+.+..+.-.....+.+++... + ..+|+.|+. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5778888777765444333334455544432 2 356666642 288999999874 122221
Q ss_pred --ecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCc-eeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 156 --RASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHK-KMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 156 --~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~-~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
....++|++++-- ++.++++.++.|++|++...+ ...... .....+.++... +.+++++.. -+.+.++....
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~-~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA-MKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES-SSSEEEEEEET
T ss_pred EEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc-ccCEEEEEEEc
Confidence 2246789888876 555556666899999998877 433322 123355555544 668888774 55567665443
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.... ...+..-..+..+..+... +++..++++..+|.+.++...
T Consensus 159 ~~~~-l~~va~d~~~~~v~~~~~l------~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 159 ENNK-LILVARDYQPRWVTAAEFL------VDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTE--EEEEEEESS-BEEEEEEEE-------SSSEEEEEETTSEEEEEEE-
T ss_pred cCCE-EEEEEecCCCccEEEEEEe------cCCcEEEEEcCCCeEEEEEEC
Confidence 2111 0112222223334444444 455699999999999999864
No 359
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.45 E-value=0.01 Score=53.52 Aligned_cols=199 Identities=12% Similarity=0.120 Sum_probs=115.0
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC---CEEEEEeCCCcEEEEeCC--CCceeEEee---c
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPL--TGSLLGKFR---A 157 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~s~~~dg~v~iwd~~--~~~~~~~~~---~ 157 (630)
++++.+--..|.|+-||..+++.......+ .+..++.+--.| .+.+.++.--.|--||.. .....+++. .
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 667777777888888999887765443322 224445553333 233444444456667733 223333311 1
Q ss_pred --CCCCeEEEEEccCCCEEEEeC-----------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 158 --STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 158 --~~~~v~~l~~~p~~~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
.......-..+|+|++++-.. |.++.|-. +..+..+...-+--+.++|+.+.+.+....+.+-.|
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 123556667899999855432 23444432 222222222233346789998888887776667788
Q ss_pred EEEE--cCCCccccceeeeeecC----CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 225 ALWR--TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 225 ~vwd--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.-|| ..++.......++.+.. ......-+++. .+|.+.+++-..|+|.-+|..+|+.+.+.+-+
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-----~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-----TEGNLYVATFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-----cCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence 7787 66665443344444433 12222333333 56777777777889999999999998876543
No 360
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.40 E-value=0.034 Score=54.18 Aligned_cols=177 Identities=16% Similarity=0.162 Sum_probs=108.5
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCceeEEeecCCC-----
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRASTK----- 160 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~----- 160 (630)
+.+.++|..+++.+..+..+. .-.+..+|+|+.+++++ ....|.+||..+-.+...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 479999999999876665443 34467899999988753 344799999999887775443322
Q ss_pred --CeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 --~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
....++++++|+++++.. .+|.|.|+..++.+.++... .+..+-=+++ +.|.+-| .||.+.-..+....+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC-~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLC-GDGSLLTVTLDADGK 169 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEE-TTSCEEEEEETSTSS
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEe-cCCceEEEEECCCCC
Confidence 223468899999999876 69999999999988877632 2222222333 3455666 599998888874332
Q ss_pred ccceeeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 235 QSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
........+.. ......-..+. ..+..++-.+.+|.|+--|+...
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~-----~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYS-----RDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEE-----TTTTEEEEEBTTSEEEEEEETTS
T ss_pred EeEeeccccCCCCcccccccceE-----CCCCeEEEEecCCEEEEEeccCC
Confidence 21111111111 11122122222 34455555788888888776443
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.37 E-value=0.014 Score=60.43 Aligned_cols=131 Identities=11% Similarity=0.182 Sum_probs=75.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
++++++ +++|...||.....+.. ..+....++|.+.+ .+++-...++|.++.--..+....++.. ..+..+
T Consensus 44 gr~v~V-~g~geY~iyt~~~~r~k------~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~I 114 (443)
T PF04053_consen 44 GRFVLV-CGDGEYEIYTALAWRNK------AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKI 114 (443)
T ss_dssp SSEEEE-EETTEEEEEETTTTEEE------EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEE
T ss_pred CCEEEE-EcCCEEEEEEccCCccc------ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC-cccceE
Confidence 566666 77888888874443332 12445678898854 5677766888999632222222233322 123333
Q ss_pred EEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 166 ~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
-. |.+|+..+ +.|.+||+.+++.++.+... +|..+.|+++|.+++..+ +..+.+++....
T Consensus 115 f~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--~~~i~il~~~~~ 175 (443)
T PF04053_consen 115 FG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--KDSIYILKYNLE 175 (443)
T ss_dssp E----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE---S-SEEEEEE-HH
T ss_pred Ec---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe--CCeEEEEEecch
Confidence 22 77777777 77999999999999988733 489999999999999886 456788775543
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.32 E-value=0.022 Score=45.60 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=64.7
Q ss_pred cceeEe-EECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 6 IRDILT-SFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 6 V~~~~~-~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
|+++|+ .|..|| +.|++||.|..||||+- ...+.++.... .++++.-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-------------------~v~~L~~~~-------- 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-------------------KVTSLCSLG-------- 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-------------------ceEEEEEcC--------
Confidence 445533 355565 58999999999999974 45666665321 233333222
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec---CCC-EEEEEeCCCcEE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVC 142 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~---~g~-~l~s~~~dg~v~ 142 (630)
...++.+..+|+|-+|+-. ..+++.... ..++++.+.. +|. -|++|-.+|.|-
T Consensus 53 --~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 53 --GGRFAYALANGTVGVYDRS--QRLWRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --CCEEEEEecCCEEEEEeCc--ceeeeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4568999999999999763 334455333 3367776654 332 488888888763
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0041 Score=67.81 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=71.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+..+++|+..|.|...|+..+-........-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+.+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 55689999999999998876522111112345799999999999999999999999999999999999888777655544
Q ss_pred ---EEccCCCEEEEeC
Q 006808 166 ---AVSSDGKMLATAA 178 (630)
Q Consensus 166 ---~~~p~~~~l~~~~ 178 (630)
.+..++..++++.
T Consensus 179 i~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSD 194 (1206)
T ss_pred EEEEEeCCCcEEEEcc
Confidence 4455666777776
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.23 E-value=0.065 Score=57.80 Aligned_cols=127 Identities=12% Similarity=0.138 Sum_probs=71.1
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------------CcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
.|.+++... .. ..+..+. ..+.-.|+|+|..+++.... +.+.+.++..+.... .....|..
T Consensus 380 ~Lwv~~~gg-~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Iss 452 (591)
T PRK13616 380 SLWVGPLGG-VA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISE 452 (591)
T ss_pred EEEEEeCCC-cc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCe
Confidence 355656432 22 2333332 37888999998887776532 223333443333222 23457999
Q ss_pred EEEccCCCEEEEeC-CeEEE---EECCCCce-e---eEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 165 MAVSSDGKMLATAA-GQLKT---FNCSDHKK-M---QKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 165 l~~~p~~~~l~~~~-g~i~l---wd~~~~~~-~---~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
+.|+|||..++... +.|++ -....|.. + ..+ .+-...+.++.|.+++..++.....+..+...++.
T Consensus 453 l~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 453 LQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred EEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC
Confidence 99999999888766 77776 44444531 1 112 22233468899999998554433222334444444
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.23 E-value=0.042 Score=56.06 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=105.3
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..++|+++ +.|.=| ++|.|..+|.+.|.|+.....+..-.-.. .+........++++.|....-...
T Consensus 85 ~~g~vtal--~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~----------~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 85 KQGPVTAL--KNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE----------SFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp -S-SEEEE--EE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG------------T-SS----EEEEEEEEEE-TTS
T ss_pred cCCcEeEE--ecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------cccccccccCeeEEEEEEEecCCC
Confidence 46889444 877555 99999999999999997777665422111 001123344566777753211100
Q ss_pred cccCCcEEEEEeCCCeEEEEEccC---CeeeEE---ccCCCCCCEEEEE-EecCC-C-------------------EEEE
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSA---GQLKWR---LSDCHPGGVSAIS-FATHG-S-------------------CIYS 134 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~---~~~~~~---~~~~h~~~v~~~~-~s~~g-~-------------------~l~s 134 (630)
....-.+++|+..|.+.+|.+.- +..... ....+.++|..+. |+.+. . .++.
T Consensus 152 -~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 152 -GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp -SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred -cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 00034688999999999997741 221111 1124556666665 33221 1 2333
Q ss_pred EeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc-----CCCEEEEeC--CeEEEEECCCCceeeEeecCC----CCeE
Q 006808 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-----DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----GAVR 203 (630)
Q Consensus 135 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-----~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~----~~v~ 203 (630)
...+..++++...+.+..++..........+.+-+ .+..|++-. |.|++|.+..-+.+..+.-+. ..+.
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~ 310 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS 310 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc
Confidence 34466799999988877666442222333445532 333444333 999999999888877765432 2344
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
...|+++|..++..+ ...+.++.+
T Consensus 311 ~ssis~~Gdi~~~~g--psE~~l~sv 334 (395)
T PF08596_consen 311 SSSISRNGDIFYWTG--PSEIQLFSV 334 (395)
T ss_dssp T-EE-TTS-EEEE-S--SSEEEEEEE
T ss_pred ccEECCCCCEEEEeC--cccEEEEEE
Confidence 566788888766654 334444443
No 366
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.22 E-value=0.16 Score=51.84 Aligned_cols=73 Identities=11% Similarity=0.231 Sum_probs=49.9
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEe----eC----------------CcEEEEEe
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS----DN----------------GKYVLSSA 218 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s----p~----------------~~~l~~~~ 218 (630)
.+.+++.+|++++.|+.+ |.|.++|+.++..++.++|....- +.|. +. ..+|+.=.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 467899999999888887 999999999998888777654421 1111 00 12344433
Q ss_pred eCCCeEEEEEcCCCccc
Q 006808 219 VGERYIALWRTDGVKKQ 235 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~ 235 (630)
-.-|.|.||.++.+...
T Consensus 387 prRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRV 403 (415)
T ss_pred ccCCeEEEEecCCCCEE
Confidence 35677888888777643
No 367
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.22 E-value=0.19 Score=47.42 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=108.1
Q ss_pred EECCCCCEEEEeeCCC--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.|..+|.++-+.+.-| .|+.+|+.+|+......-.. ...+..++.+ ++.+.
T Consensus 51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--------------~~FgEGit~~-------------~d~l~ 103 (264)
T PF05096_consen 51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--------------RYFGEGITIL-------------GDKLY 103 (264)
T ss_dssp EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--------------T--EEEEEEE-------------TTEEE
T ss_pred EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--------------cccceeEEEE-------------CCEEE
Confidence 4556777777766544 79999999998876543111 1111111111 13344
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-----CCeEE
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (630)
..--.++...+||..+-+.+.++. ..+.=.+++ .+|..|+.+.....++++|..+.+..+.+.... ..+.-
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EEEecCCeEEEEccccceEEEEEe--cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 444567889999999988887764 334556666 467788888778889999998888777765432 24555
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceeeEeec------------C---CCCeEEEEEeeCCcEEEEEe
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG------------H---PGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~------------h---~~~v~~l~~sp~~~~l~~~~ 218 (630)
+.|. +|...|=.- ..|...|..+|++...+.- + ..-.+.|+|.|....|+++|
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6665 565444433 7888899999988765520 1 23478999999888887777
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.022 Score=57.60 Aligned_cols=137 Identities=16% Similarity=0.319 Sum_probs=93.3
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-------EEEEeCCCcEEEEeCCCC-c-eeEEeecC--
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-------IYSAGADGMVCEIDPLTG-S-LLGKFRAS-- 158 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-------l~s~~~dg~v~iwd~~~~-~-~~~~~~~~-- 158 (630)
..+.....++-.|+..|+.+-.... |.. |+-+.+.|+++. -+.|-.|..|.-||.+-. . .+..-+.|
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 3344455688899999998866643 333 777777776542 234556778999998732 2 12222222
Q ss_pred --CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 159 --TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 159 --~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.....|.+-..+| ++++|+ |.|++||--..+....+++...+|..|..+.+|+++++++ +.++-+.++.-
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~ 501 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTLI 501 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence 2356677777777 566666 9999999733334445788899999999999999999886 77888877643
No 369
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.18 E-value=0.24 Score=49.87 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=79.5
Q ss_pred CcEEEEEeC--C----CeEEEEEccCCeeeEEccCC--CCCCEEEEEEecCCCEEEEEeC--------------------
Q 006808 86 SSLLVLGTG--G----GDVLALAVSAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGA-------------------- 137 (630)
Q Consensus 86 ~~~l~~~~~--~----g~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~s~~~-------------------- 137 (630)
+.+++++-+ + |-+.++|-.+-+...+.... ....-.++-|.|..+.++|...
T Consensus 141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y 220 (461)
T PF05694_consen 141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY 220 (461)
T ss_dssp --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence 445555433 2 33778887776666554332 2334567888888888887642
Q ss_pred CCcEEEEeCCCCceeEEeecCCC--CeEEEEEc--cCCCEEEEeC---CeEEEEEC-CCCc----eeeEeecC-------
Q 006808 138 DGMVCEIDPLTGSLLGKFRASTK--GISCMAVS--SDGKMLATAA---GQLKTFNC-SDHK----KMQKFSGH------- 198 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~~--p~~~~l~~~~---g~i~lwd~-~~~~----~~~~~~~h------- 198 (630)
..++.+||+.+.+.++++..... ....+.|. |+..+=++++ ++|..|-- ..++ .+-.+...
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 25899999999999999886543 34566664 4455444443 56655543 3332 12122110
Q ss_pred ----------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 199 ----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 199 ----------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
..-|+.|.+|.|.++|.+++-..|.|+.||+......
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 3457899999999999999988999999999886543
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0021 Score=66.03 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=73.6
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEE-EEEEecCCCEEEEEeCCCcEEEE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEI 144 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~-~~~~s~~g~~l~s~~~dg~v~iw 144 (630)
..+..+.|+|. -.+||.++.+|.|.++.+. .+.++++.. |...++ +++|.|||+.|+.|-.||+|++.
T Consensus 21 ~~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 21 INIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred cceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 34556778876 6789999999999999888 666667752 555666 99999999999999999999999
Q ss_pred eCCCCceeEEeec-CCCCeEEEEEcc
Q 006808 145 DPLTGSLLGKFRA-STKGISCMAVSS 169 (630)
Q Consensus 145 d~~~~~~~~~~~~-~~~~v~~l~~~p 169 (630)
|+.++..+..+.. ...+|.++-|.|
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999987776322 344777777764
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0077 Score=60.71 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=97.5
Q ss_pred CCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC
Q 006808 16 ALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (630)
Q Consensus 16 dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (630)
+.++|+ ++.....++=.|+..|+.+.+++-+.. ++...+.|+..-..+. ...-++|-.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~--------------------~e~TlvGLs 402 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLT--------------------SEQTLVGLS 402 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccc--------------------ccccEEeec
Confidence 444444 555556778889999999999886655 4444444441111100 222367888
Q ss_pred CCeEEEEEccCCee-eEEccCCCC----CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eEEeecCCCCeEEEEEc
Q 006808 95 GGDVLALAVSAGQL-KWRLSDCHP----GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFRASTKGISCMAVS 168 (630)
Q Consensus 95 ~g~v~iwd~~~~~~-~~~~~~~h~----~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~~ 168 (630)
+..|+-||++-... ......+|. ....|++-..+| +|++||.+|.|++||- .+.. ...+.+...+|..+..+
T Consensus 403 ~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 403 DNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred CCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEee
Confidence 88999999974322 112222332 235566665555 7999999999999996 4443 34478888899999999
Q ss_pred cCCCEEEEeC-CeEEEEEC
Q 006808 169 SDGKMLATAA-GQLKTFNC 186 (630)
Q Consensus 169 p~~~~l~~~~-g~i~lwd~ 186 (630)
.+|++|++.+ ..+.+.++
T Consensus 481 adGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 481 ADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccCcEEEEecccEEEEEEE
Confidence 9999998877 66666664
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.019 Score=53.47 Aligned_cols=125 Identities=18% Similarity=0.342 Sum_probs=84.2
Q ss_pred cEEEEEeCCCe-EEEEEccCCeeeEEcc-------CCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC-cee
Q 006808 87 SLLVLGTGGGD-VLALAVSAGQLKWRLS-------DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTG-SLL 152 (630)
Q Consensus 87 ~~l~~~~~~g~-v~iwd~~~~~~~~~~~-------~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~-~~~ 152 (630)
.-++.+-.-|+ ..++|+...+.+..+. .+|. .|||||.+|+..-.| |.|-+||.+.+ +.+
T Consensus 81 ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv 154 (366)
T COG3490 81 RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV 154 (366)
T ss_pred ceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEeccccccee
Confidence 34566666676 5788888776554332 2343 699999999876433 68999998754 566
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeCCeEEE--------------------EECCCCceeeE--ee--cCCCCeEEEEEe
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAAGQLKT--------------------FNCSDHKKMQK--FS--GHPGAVRFMTFS 208 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~l--------------------wd~~~~~~~~~--~~--~h~~~v~~l~~s 208 (630)
..|..|.-....+.|.+||+.++.+.|-|.. .|..+|..+.+ ++ .+...|..+...
T Consensus 155 gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g 234 (366)
T COG3490 155 GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG 234 (366)
T ss_pred cccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence 7788888788899999999999998754433 34344444332 22 234457778888
Q ss_pred eCCcEEEEE
Q 006808 209 DNGKYVLSS 217 (630)
Q Consensus 209 p~~~~l~~~ 217 (630)
+||..++.+
T Consensus 235 ~dgtvwfgc 243 (366)
T COG3490 235 RDGTVWFGC 243 (366)
T ss_pred CCCcEEEEE
Confidence 887765443
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.12 E-value=0.3 Score=47.63 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=89.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe----------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF---------- 155 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~---------- 155 (630)
++.|++|+.+| +.+++........... +...|..+...|+-+.+++-+ |+.+.++++.........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 77899999999 9999984333322332 334599999999877766664 599999998754433310
Q ss_pred ----ecCCCCeEEEE---EccCCCEEEEeC-CeEEEEECCCC-----ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 156 ----RASTKGISCMA---VSSDGKMLATAA-GQLKTFNCSDH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 156 ----~~~~~~v~~l~---~~p~~~~l~~~~-g~i~lwd~~~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
......+...+ -...+..|+++. ..|.+|..... +..+.+. -...+..++|. +..++.+. .+
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~--~~ 157 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT--SK 157 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe--CC
Confidence 01122444444 122345566655 78888776543 3455555 34678899998 45566664 44
Q ss_pred eEEEEEcCCCcc
Q 006808 223 YIALWRTDGVKK 234 (630)
Q Consensus 223 ~i~vwd~~~~~~ 234 (630)
...+.|+.++..
T Consensus 158 ~f~~idl~~~~~ 169 (275)
T PF00780_consen 158 GFYLIDLNTGSP 169 (275)
T ss_pred ceEEEecCCCCc
Confidence 578899987654
No 374
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.10 E-value=0.4 Score=48.70 Aligned_cols=163 Identities=12% Similarity=0.168 Sum_probs=89.7
Q ss_pred EEEEEccCCeeeE-Ecc---CCCCCCEEEEEEecCCCEEEEE--eCCC---cEEEEeCCCCceeEEeecC-CC---CeEE
Q 006808 98 VLALAVSAGQLKW-RLS---DCHPGGVSAISFATHGSCIYSA--GADG---MVCEIDPLTGSLLGKFRAS-TK---GISC 164 (630)
Q Consensus 98 v~iwd~~~~~~~~-~~~---~~h~~~v~~~~~s~~g~~l~s~--~~dg---~v~iwd~~~~~~~~~~~~~-~~---~v~~ 164 (630)
+.|+++.+++... ... ..-...+..+.|.+++..|+.. ..+. .+.++|..++.+...+... .. ....
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 5667777776531 111 1234468899999999844443 3332 5677788777654333321 11 2235
Q ss_pred EEEc-cCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEE-EEEeeCCcEEEEEeeCC----CeEEEEEcC-CC
Q 006808 165 MAVS-SDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGE----RYIALWRTD-GV 232 (630)
Q Consensus 165 l~~~-p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~-l~~sp~~~~l~~~~~~d----~~i~vwd~~-~~ 232 (630)
..|. +++..++..+ ..|++++...+. ...+....-.|.. +.|+++++.++..+..+ +.|..-++. .+
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 5554 7666665554 488888987765 3455555666755 67888888776655432 356555666 44
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
... |+ +...... ....|+ |++++++-.+.
T Consensus 319 ~~~---~L-T~~~~~~--~~~~~S-----pdg~y~v~~~s 347 (353)
T PF00930_consen 319 EPK---CL-TCEDGDH--YSASFS-----PDGKYYVDTYS 347 (353)
T ss_dssp EEE---ES-STTSSTT--EEEEE------TTSSEEEEEEE
T ss_pred CeE---ec-cCCCCCc--eEEEEC-----CCCCEEEEEEc
Confidence 322 21 1111111 344555 89888776543
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0024 Score=65.57 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=76.9
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE-EEEEccCCCEEEEeC--CeEEEEECCCCceeeE
Q 006808 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~ 194 (630)
..|.-+.|+|.-..||.+..+|.|.+..+. .+.+.++..+...++ +++|.|||+.||+|- |+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999998999999999999999987 888888887777777 999999999999997 9999999999987766
Q ss_pred ee-cCCCCeEEEEEee
Q 006808 195 FS-GHPGAVRFMTFSD 209 (630)
Q Consensus 195 ~~-~h~~~v~~l~~sp 209 (630)
+. ....+|.++.|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 32 2455788888864
No 376
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.09 E-value=0.28 Score=46.50 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=89.5
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
++.++|.+.. +.++++....+.|..++.. |+.+.++...-.+..-+|++..++.++++.-.++.+.++++.
T Consensus 24 ~SGLTy~pd~--------~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 24 LSGLTYNPDT--------GTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ccccEEcCCC--------CeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 5677777764 5677778888889888874 677666543334678899998877766666668999999884
Q ss_pred CCc------eeEEee-----cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC---Cceee--Ee------ecCCCCeE
Q 006808 148 TGS------LLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQ--KF------SGHPGAVR 203 (630)
Q Consensus 148 ~~~------~~~~~~-----~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~---~~~~~--~~------~~h~~~v~ 203 (630)
... ....+. .+...+-.++|+|.+..|+++- .-..+|.+.. ...+. .. ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112222 2344689999999877776665 3334444332 11111 11 12334678
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+++++|....|+.-+...+.|..+| ..++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~ 203 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGR 203 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCC
Confidence 9999998766666665788899998 4444
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.17 Score=47.47 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=102.4
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------------------CcEE
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------------GMVC 142 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------------------g~v~ 142 (630)
+.+|+..-.| |.|-|||...+-...--+..|.-....+.|.+||+.++.+... -.+.
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlv 204 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLV 204 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEE
Confidence 5555544332 4589999986543323334677778899999999998876320 1233
Q ss_pred EEeCCCCceeEEee----cCCCCeEEEEEccCCCEEEEeC--Ce-----EEEEECCCCceeeEee-------cCCCCeEE
Q 006808 143 EIDPLTGSLLGKFR----ASTKGISCMAVSSDGKMLATAA--GQ-----LKTFNCSDHKKMQKFS-------GHPGAVRF 204 (630)
Q Consensus 143 iwd~~~~~~~~~~~----~~~~~v~~l~~~p~~~~l~~~~--g~-----i~lwd~~~~~~~~~~~-------~h~~~v~~ 204 (630)
+.|..+|+.+.+.. .+.-.|..++..+||+.++.+- |. -.+=-...++.+.-+. .....|-+
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs 284 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS 284 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh
Confidence 44444555444322 2334688888889887766553 21 1111112333333332 12345777
Q ss_pred EEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 205 l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
|+.+.+...++.++-..+...+||..++... ... ....+.-.. +...-+++.+.+|.+.++.
T Consensus 285 iA~n~~~glV~lTSP~GN~~vi~da~tG~vv------~~a---~l~daaGva-----~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 285 IAANRRDGLVALTSPRGNRAVIWDAATGAVV------SEA---ALPDAAGVA-----AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eeecccCCeEEEecCCCCeEEEEEcCCCcEE------ecc---cccccccce-----eccCceEEecCCceEEecc
Confidence 8887666666666645667899999998743 111 111111111 3344456666778888774
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.31 Score=47.85 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=84.6
Q ss_pred CCEEEEEEecCCCEEEEEeC-----------CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEE
Q 006808 118 GGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT 183 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~l 183 (630)
...+.+...|+|.+-++... -|.++.+|. .+..++.+..+-..-+.|+|+||++.+..+. +.|+-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34677888899876544322 133444443 4666655555455567899999999888876 68887
Q ss_pred EECCC--Cce-----eeEeecCCCCeEEEEEeeCCcEEEEEeeCCC-eEEEEEcCCCccccceeeeeecCCceeeeeEEe
Q 006808 184 FNCSD--HKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 184 wd~~~--~~~-----~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (630)
|++.. +.. ...+..+.+..-.++...+|.+.+++. .++ .|.+|+.. +++. ....-+.....+.+|
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~F 262 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGRVVRFNPD-GKLL-----GEIKLPVKRPTNPAF 262 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCceEEEECCC-CcEE-----EEEECCCCCCccceE
Confidence 77652 211 122233445566777888888775443 343 89999988 5533 223333344455555
Q ss_pred cCCccCCCCCEEEEEec
Q 006808 256 DNGGVDDAGLYVLAISE 272 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s~ 272 (630)
. -|+.+.|.+.+.
T Consensus 263 g----G~~~~~L~iTs~ 275 (307)
T COG3386 263 G----GPDLNTLYITSA 275 (307)
T ss_pred e----CCCcCEEEEEec
Confidence 4 144455544443
No 379
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.99 E-value=0.31 Score=50.46 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=27.9
Q ss_pred CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 199 ~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.+++..++.||+|++++.-. .+|.+.+.+..-.+
T Consensus 216 ~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFSE 249 (410)
T ss_pred CCCeEEEEECCCCCEEEEEE-CCCCEEEEECcccc
Confidence 46899999999999998887 58898888765544
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.92 E-value=0.68 Score=48.31 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=101.9
Q ss_pred CcEEEEE-eCCCe----EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-----------CcEEEEeCCCC
Q 006808 86 SSLLVLG-TGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----------GMVCEIDPLTG 149 (630)
Q Consensus 86 ~~~l~~~-~~~g~----v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----------g~v~iwd~~~~ 149 (630)
+++++.+ +.+|. ++++|+.+|+.+...... .....+.|.++++.|+....+ ..|+.|.+.+.
T Consensus 135 g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 135 GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence 5556554 45555 999999999876543321 112349999998887665432 24788888776
Q ss_pred cee--EEeecCCCC--eEEEEEccCCCEEEEeC------CeEEEEECCCC----ceeeEeecCCCCeEEEEEeeCCcEEE
Q 006808 150 SLL--GKFRASTKG--ISCMAVSSDGKMLATAA------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 150 ~~~--~~~~~~~~~--v~~l~~~p~~~~l~~~~------g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
..- ..|...... ...+..++++++++... ..+++.++..+ .....+......+....-+..+.+++
T Consensus 213 ~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi 292 (414)
T PF02897_consen 213 QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYI 292 (414)
T ss_dssp GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEE
T ss_pred hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEE
Confidence 432 445544443 56888999999988654 25888898875 23333333333443333333444444
Q ss_pred EEee--CCCeEEEEEcCCCccccceeeeeecCCc-eeeeeEEecCCccCCCCCEEEEEecCC--cEEEEEcC
Q 006808 216 SSAV--GERYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQ 282 (630)
Q Consensus 216 ~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~ 282 (630)
.+.. ..+.|...++.......... ....+.. ..+..+... .+.+++....++ .|++|++.
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~-~l~~~~~~~~l~~~~~~------~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSPAEWWT-VLIPEDEDVSLEDVSLF------KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSGGGEEE-EEE--SSSEEEEEEEEE------TTEEEEEEEETTEEEEEEEETT
T ss_pred eeCCCCCCcEEEEeccccccccccee-EEcCCCCceeEEEEEEE------CCEEEEEEEECCccEEEEEECC
Confidence 4321 13466667777665321111 2233332 233333321 234455555555 68888887
No 381
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=96.89 E-value=0.0047 Score=57.79 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=81.4
Q ss_pred ccccCChhHHHHHHhccC------hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccccCCCC---hhHHHHHH
Q 006808 485 FETNIPVKKMRATILSLS------PTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQES---LTPMLSSL 555 (630)
Q Consensus 485 ~~~~~~~~~i~~tv~~l~------~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~---l~~~l~~L 555 (630)
.+..+.+..|..-|++|. ...+..+|+++..++.++ +..+.++.|+...|++||..|...++ ++..|..|
T Consensus 132 ~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~-~dfElvQa~l~vFLk~Hgd~i~~~~~~~~L~~~l~~l 210 (237)
T PF04192_consen 132 YLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSR-RDFELVQAYLSVFLKVHGDVIMESEEEEELREALEEL 210 (237)
T ss_pred HHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 566778889999999999 577888999999888744 68999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhhHhHHhc-cchHHHH
Q 006808 556 YKITVSREAAFQSLLRL-SGRLQLT 579 (630)
Q Consensus 556 ~~~~~~~~~~~~~l~~l-~g~l~~~ 579 (630)
....++...++..|++. .|.+.++
T Consensus 211 ~~~q~~~w~~L~~l~~~~~cvv~fl 235 (237)
T PF04192_consen 211 REAQESEWKRLDDLFQYCSCVVSFL 235 (237)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 99999999999988854 4455554
No 382
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.88 E-value=0.32 Score=54.06 Aligned_cols=197 Identities=16% Similarity=0.199 Sum_probs=116.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCC-------CEEEEEEec----------------CCCEEEEEeCCCcEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-------GVSAISFAT----------------HGSCIYSAGADGMVC 142 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~-------~v~~~~~s~----------------~g~~l~s~~~dg~v~ 142 (630)
+..+++++.++.|.-.|..+|+.++++...... ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 678899999999999999999998887532111 123344421 234788888999999
Q ss_pred EEeCCCCceeEEeecCCCCe-------------EEEEEcc--CCCEEEEe------------CCeEEEEECCCCceeeEe
Q 006808 143 EIDPLTGSLLGKFRASTKGI-------------SCMAVSS--DGKMLATA------------AGQLKTFNCSDHKKMQKF 195 (630)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v-------------~~l~~~p--~~~~l~~~------------~g~i~lwd~~~~~~~~~~ 195 (630)
-.|..+|+.+..|... +.| ..+.-.| .+..++++ +|.|+-+|..+|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999988776421 111 1112222 12344444 267999999999987766
Q ss_pred ecC----C-----C--------Ce-EEEEEeeCCcEEEEEe-----------------eCCCeEEEEEcCCCccccceee
Q 006808 196 SGH----P-----G--------AV-RFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 196 ~~h----~-----~--------~v-~~l~~sp~~~~l~~~~-----------------~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
..- . + .+ ...++.|....++... ...+.|.-.|..+++.. ..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~---W~ 429 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER---WV 429 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE---EE
Confidence 310 0 0 01 1233444333332211 01235666777777644 33
Q ss_pred eeecCCc-ee------eeeEEecCCccCCCCC---EEEEEecCCcEEEEEcCCccccccc
Q 006808 241 LAMEHPA-VF------MDCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 241 ~~~~~~~-~~------~~~~~~~~~~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
+...|+. .. .....+. ..+|+ .++.++.+|.++++|-.+|+.+...
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~----~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLP----DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ecccCCccccccccCCceEEeee----cCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 3332221 10 1111111 02453 7889999999999999999887653
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.83 E-value=0.0034 Score=39.32 Aligned_cols=39 Identities=33% Similarity=0.693 Sum_probs=32.8
Q ss_pred CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
+++...+..|...|.++.|++.+.++++++ .|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence 345667778899999999999998888887 699999996
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.82 E-value=0.19 Score=54.20 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=92.2
Q ss_pred CcEEEEEeCC-C-----eEEEEEccCCeeeEEccCCCCCCEEEEEEe-cCCCEEEEEeCCC-----cEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGG-G-----DVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADG-----MVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~-g-----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg-----~v~iwd~~~~~~~~ 153 (630)
+.+.++|+.+ | ++..||+.+++... .. .-..+-..+... -+|...++||.|| +|-.||..+.+--
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a-~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~- 409 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VA-PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT- 409 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceec-cC-CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccc-
Confidence 5667778777 3 38889998887432 11 111111111111 2677788888886 4777776654311
Q ss_pred EeecCCCCeEEEEE-ccCCCEEEEeC--------CeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 154 KFRASTKGISCMAV-SSDGKMLATAA--------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 154 ~~~~~~~~v~~l~~-~p~~~~l~~~~--------g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
.............. .-+|.+.++|+ .++..||..+++-. ..+....... .++ .-++...+.+| .|+
T Consensus 410 ~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG-~~~ 486 (571)
T KOG4441|consen 410 PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGG-FDG 486 (571)
T ss_pred ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECC-ccC
Confidence 11111112222222 22677777776 36888998876532 2221111111 122 23455566666 354
Q ss_pred -----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCC
Q 006808 223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQN 283 (630)
Q Consensus 223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~ 283 (630)
++..||..+.+-. .+-.+........+... ++...++|+.|| +|..||..+
T Consensus 487 ~~~~~~VE~ydp~~~~W~---~v~~m~~~rs~~g~~~~-------~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 487 TSALSSVERYDPETNQWT---MVAPMTSPRSAVGVVVL-------GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred CCccceEEEEcCCCCcee---EcccCccccccccEEEE-------CCEEEEEecccCccccceeEEcCCCC
Confidence 3777888776532 22222233333333333 466777777766 344555433
No 385
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.82 E-value=0.44 Score=51.05 Aligned_cols=199 Identities=12% Similarity=0.166 Sum_probs=114.0
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..++.++.++.|.-.|..+|+.+..+.............. ...... ... .+..+++++.++
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~----~~~~rg--~av------------~~~~v~v~t~dg 130 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCC----DVVNRG--VAL------------YDGKVFFGTLDA 130 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCccccccccc----cccccc--ceE------------ECCEEEEEcCCC
Confidence 45666777788999999999999887653211000000000 000000 000 045688899999
Q ss_pred eEEEEEccCCeeeEEccCCCCC---CEEEEEEecCCCEEEEEe------CCCcEEEEeCCCCceeEEeecCCC-------
Q 006808 97 DVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTK------- 160 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~------- 160 (630)
.|.-+|..+|+.+++....... .+++--.-.++ .++.+. .+|.|..+|..+|+.+-.+..-..
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~ 209 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK 209 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence 9999999999998776432111 12211111134 455543 268999999999988766443111
Q ss_pred ------------------------Ce-EEEEEccCCCEEEEeC------------------CeEEEEECCCCceeeEeec
Q 006808 161 ------------------------GI-SCMAVSSDGKMLATAA------------------GQLKTFNCSDHKKMQKFSG 197 (630)
Q Consensus 161 ------------------------~v-~~l~~~p~~~~l~~~~------------------g~i~lwd~~~~~~~~~~~~ 197 (630)
.+ ..+++.|...++..+. .+|.-.|+++|+..-.|+.
T Consensus 210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred cccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence 11 1235666555555443 1577788999988776653
Q ss_pred CCCC---------eEEEEEeeCCc--EEEEEeeCCCeEEEEEcCCCcc
Q 006808 198 HPGA---------VRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 198 h~~~---------v~~l~~sp~~~--~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.... ..-+.+..+|+ -++..+..+|.+++.|-.+++.
T Consensus 290 ~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 290 TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2211 11222334665 3444444799999999998875
No 386
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.72 E-value=0.66 Score=48.02 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=50.2
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-CCC
Q 006808 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGA 201 (630)
Q Consensus 125 ~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-~~~ 201 (630)
++.+....+....++.+.+.+-...+. +. ..+++..+++||+|+++|.-. |.+.+.+..-.+.+..+... ...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 444444445545555565444322211 12 245899999999999998766 88888876655566555433 345
Q ss_pred eEEEEEeeCC
Q 006808 202 VRFMTFSDNG 211 (630)
Q Consensus 202 v~~l~~sp~~ 211 (630)
...+.|.-+.
T Consensus 262 p~~~~WCG~d 271 (410)
T PF04841_consen 262 PKQMAWCGND 271 (410)
T ss_pred CcEEEEECCC
Confidence 5667776443
No 387
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.61 E-value=0.13 Score=41.18 Aligned_cols=99 Identities=14% Similarity=0.280 Sum_probs=61.5
Q ss_pred EEEEEEec---CC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeE
Q 006808 120 VSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 120 v~~~~~s~---~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~ 194 (630)
|+++++.. +| +.|++|+.|..|++|+ ....+..+.. ...|.+++-...+++.+.-. |+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeee
Confidence 56777655 33 4599999999999998 3466667764 45678888777655444433 9999998522 2333
Q ss_pred eecCCCCeEEEEEee---CCc-EEEEEeeCCCeEE
Q 006808 195 FSGHPGAVRFMTFSD---NGK-YVLSSAVGERYIA 225 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp---~~~-~l~~~~~~d~~i~ 225 (630)
.+.. ..++++.+.. +|. -|+++- .+|.|-
T Consensus 77 iKSK-~~~~~~~~~D~~gdG~~eLI~Gw-snGkve 109 (111)
T PF14783_consen 77 IKSK-NQVTSMAFYDINGDGVPELIVGW-SNGKVE 109 (111)
T ss_pred eccC-CCeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence 3322 2355555443 232 466655 477664
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.57 E-value=0.86 Score=50.77 Aligned_cols=206 Identities=15% Similarity=0.211 Sum_probs=116.1
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEE-eccccccc------ccccCCcEE
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMK-WLSVDRKK------KRKLGSSLL 89 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-w~~~~~~~------~~~~~~~~l 89 (630)
+..+..|+.++.|.-.|..+|+.+..+.......... .+. .+.-+. |..+.... .-......|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~--------~~~--~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR--------QHQ--TCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc--------ccc--cccceEEecCCcccccccccccccccCCEE
Confidence 4567778888999999999999998876432211000 000 000011 11100000 000115578
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEE-------------EEEEec--CCCEEEEEeC----------CCcEEEE
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-------------AISFAT--HGSCIYSAGA----------DGMVCEI 144 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~-------------~~~~s~--~g~~l~s~~~----------dg~v~iw 144 (630)
++++.|+.+.-.|..+|+.+..+- ..+.|. .+.-.| .+..++.|+. +|.|+-+
T Consensus 264 ~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 264 ILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 999999999999999999987663 222210 111112 2345666642 6889999
Q ss_pred eCCCCceeEEeecC---------CC--------Ce-EEEEEccCCCEEEEeC--------------------CeEEEEEC
Q 006808 145 DPLTGSLLGKFRAS---------TK--------GI-SCMAVSSDGKMLATAA--------------------GQLKTFNC 186 (630)
Q Consensus 145 d~~~~~~~~~~~~~---------~~--------~v-~~l~~~p~~~~l~~~~--------------------g~i~lwd~ 186 (630)
|..+|+.+-.+... .+ .+ ..+++.|...+++.+. +.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 99999988776521 00 01 2234444433333311 35677788
Q ss_pred CCCceeeEeec-CC--------CCeEEEEEee-CCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 187 SDHKKMQKFSG-HP--------GAVRFMTFSD-NGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 187 ~~~~~~~~~~~-h~--------~~v~~l~~sp-~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
++|+..-.++. |. ....-+.+.. +|+ .++.++ .+|.++++|-++++..
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEE
Confidence 88987766643 21 1111122322 553 455555 7999999999998754
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.56 E-value=0.23 Score=53.77 Aligned_cols=182 Identities=8% Similarity=0.052 Sum_probs=88.2
Q ss_pred CcEEEEEeCC------CeEEEEEccCCeeeEEccCCC--CCCEEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCc--
Q 006808 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGS-- 150 (630)
Q Consensus 86 ~~~l~~~~~~------g~v~iwd~~~~~~~~~~~~~h--~~~v~~~~~s~~g~~l~s~~~dg-----~v~iwd~~~~~-- 150 (630)
+.+.++|+.+ ..+..||+.++... ....-. ......+ .-+|+..+.||.++ .+..||..+.+
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 5556666643 23788998887542 111101 1111222 22576777777654 47889977543
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEeC--C-----------------------eEEEEECCCCce--eeEeecCCCCeE
Q 006808 151 LLGKFRASTKGISCMAVSSDGKMLATAA--G-----------------------QLKTFNCSDHKK--MQKFSGHPGAVR 203 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g-----------------------~i~lwd~~~~~~--~~~~~~h~~~v~ 203 (630)
.+..+.........+ .-+|.+.+.|+ + .+..||..+.+- +..+. .....
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~ 456 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIR 456 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--ccccc
Confidence 111112111111122 22577777765 1 366788776542 22221 11111
Q ss_pred EEEEeeCCcEEEEEeeCC-----CeEEEEEcCC-CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC--c
Q 006808 204 FMTFSDNGKYVLSSAVGE-----RYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--V 275 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d-----~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg--~ 275 (630)
.-...-+++..+.||..+ ..+..||..+ .+- .....+..+......+.+ +|...++|+.+| .
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W---~~~~~m~~~r~~~~~~~~-------~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW---ELITTTESRLSALHTILH-------DNTIMMLHCYESYML 526 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCe---eEccccCcccccceeEEE-------CCEEEEEeeecceee
Confidence 112223466656665321 2467788887 442 122333333333333333 577788888887 4
Q ss_pred EEEEEcCCc
Q 006808 276 CYIWYGQNI 284 (630)
Q Consensus 276 i~iwd~~~~ 284 (630)
+..||..+.
T Consensus 527 ~e~yd~~~~ 535 (557)
T PHA02713 527 QDTFNVYTY 535 (557)
T ss_pred hhhcCcccc
Confidence 555555443
No 390
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.53 E-value=0.0072 Score=37.71 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=28.8
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
.|...|.++.|++.+..+++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 6888999999999999999999999999996
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.43 E-value=0.15 Score=55.06 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCEEEEEEecCCCEEEEEe------CCC--cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C---------
Q 006808 118 GGVSAISFATHGSCIYSAG------ADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------- 179 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g--------- 179 (630)
..+.+.+++|+|+.++... .|. .+.+++. .+.. ..+.. ....+.-.|+|+|..+++.. +
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999876554 243 4555564 2333 33322 22478889999988777664 2
Q ss_pred ----eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 180 ----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 180 ----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.+++.++..+.... ...+.|..+.|||||..++... ++.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 23333333332221 2346799999999999998876 567777
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.34 E-value=0.98 Score=42.72 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=90.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeEEeecCCC-CeEEEEEccCCCEEEEeC-CeEEEEECCCCcee
Q 006808 117 PGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM 192 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~ 192 (630)
..-..++.|..+|.++-+.+.-| .|+.+|+.+++......-... ---.++...+.-+.++=- +...+||..+.+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEE
Confidence 34467888877888778887666 799999999988766553332 223445543322222222 89999999999998
Q ss_pred eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 193 ~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
.++.- .+.=..++ .++..|+.+. +...|+++|..+.+......+...+.+-..+.=+-+ -+|...|=.=.
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~------i~G~IyANVW~ 193 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY------INGKIYANVWQ 193 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE------ETTEEEEEETT
T ss_pred EEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEE------EcCEEEEEeCC
Confidence 88863 34445666 5677777765 467899999877654311111111111111111222 13444444444
Q ss_pred CCcEEEEEcCCccccc
Q 006808 273 TGVCYIWYGQNIEELR 288 (630)
Q Consensus 273 dg~i~iwd~~~~~~~~ 288 (630)
...|...|..+|+...
T Consensus 194 td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVG 209 (264)
T ss_dssp SSEEEEEETTT-BEEE
T ss_pred CCeEEEEeCCCCeEEE
Confidence 5566666777776543
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.15 E-value=1.1 Score=45.34 Aligned_cols=193 Identities=12% Similarity=0.078 Sum_probs=92.2
Q ss_pred CcEEEE-EeCCCeEEEEEccCC----eeeEEccC--CCC----CCEEEEEEecCCCEEEEEe--C----CCcEEEEeCCC
Q 006808 86 SSLLVL-GTGGGDVLALAVSAG----QLKWRLSD--CHP----GGVSAISFATHGSCIYSAG--A----DGMVCEIDPLT 148 (630)
Q Consensus 86 ~~~l~~-~~~~g~v~iwd~~~~----~~~~~~~~--~h~----~~v~~~~~s~~g~~l~s~~--~----dg~v~iwd~~~ 148 (630)
.++|++ |-.++.|+|+|+.+. +..+.+.. -+. +....+..-|+|+.++++= . -|-+.+.|-.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 344555 447788999999853 22222210 010 1223344457888888752 2 24688889888
Q ss_pred CceeEEeecCCC---CeEEEEEccCCCEEEEeC----------------------CeEEEEECCCCceeeEeecCC--CC
Q 006808 149 GSLLGKFRASTK---GISCMAVSSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHP--GA 201 (630)
Q Consensus 149 ~~~~~~~~~~~~---~v~~l~~~p~~~~l~~~~----------------------g~i~lwd~~~~~~~~~~~~h~--~~ 201 (630)
.+....+..... .-+.+-|.|..+.+++.. .++++||+.+.+.++++.-.. ..
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888877765332 346677889888888863 379999999999999886332 23
Q ss_pred eEEEEEe--eCCcEEEEEeeCCCeEEEEEc-CCCccccceeeeeecCC-----------------ceeeeeEEecCCccC
Q 006808 202 VRFMTFS--DNGKYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----------------AVFMDCRCIDNGGVD 261 (630)
Q Consensus 202 v~~l~~s--p~~~~l~~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 261 (630)
..-|.|. |+..+=++++.-..+|..|-- ..+.-. ...+..+... ...++-+..+
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS----- 320 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS----- 320 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence 4566775 444444443334555655544 333211 1122222211 1223333344
Q ss_pred CCCCEEEEEec-CCcEEEEEcCCc
Q 006808 262 DAGLYVLAISE-TGVCYIWYGQNI 284 (630)
Q Consensus 262 ~~~~~l~s~s~-dg~i~iwd~~~~ 284 (630)
.|.++|...+. +|.|+.||+...
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCEEEEEcccCCcEEEEecCCC
Confidence 78888877765 999999998653
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.90 E-value=0.021 Score=38.08 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=28.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (630)
.++| -+++|+|..+++|.|+.+|.|.||.+ +++.
T Consensus 11 ~~~v--~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRV--SCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcE--EEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3567 46699999999999999999999998 5554
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.85 E-value=0.34 Score=51.93 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=70.9
Q ss_pred EEEEeCCC-eEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEEeCCCcEEEEeCC---------CCceeEEe-
Q 006808 89 LVLGTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPL---------TGSLLGKF- 155 (630)
Q Consensus 89 l~~~~~~g-~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~v~iwd~~---------~~~~~~~~- 155 (630)
+++...++ .+.|||...+.....-.....+.|.++.|. |+|+.+++.|..+.|.++.-. +..+++.+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 44445444 499999998876444332457889999995 588999999999999998542 12233332
Q ss_pred -ecCC-CCeEEEEEccCCCEEEEeCCeEEEEEC
Q 006808 156 -RAST-KGISCMAVSSDGKMLATAAGQLKTFNC 186 (630)
Q Consensus 156 -~~~~-~~v~~l~~~p~~~~l~~~~g~i~lwd~ 186 (630)
..+. .+|....|.++|.+++.+++.+.|+|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 3333 588999999999888888899999974
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.74 E-value=0.28 Score=44.58 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=62.8
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEE--ccCCee-----eEEccCC---CCCCEEEEEEecCCCEEEEEeCCC
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA--VSAGQL-----KWRLSDC---HPGGVSAISFATHGSCIYSAGADG 139 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd--~~~~~~-----~~~~~~~---h~~~v~~~~~s~~g~~l~s~~~dg 139 (630)
.++|.... ..+.++-+.+-.|.-|| ..+|.. +..+.+. ..--.-.++...+|++.+++-..+
T Consensus 162 gl~Wd~d~--------K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 162 GLAWDSDA--------KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG 233 (310)
T ss_pred cccccccC--------cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc
Confidence 46777443 44566677777887777 556543 2222110 111223455566788888888888
Q ss_pred cEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
+|...|..+|+.+.+++-....|+|++|--
T Consensus 234 ~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 999999999999999998888999999953
No 397
>PHA03098 kelch-like protein; Provisional
Probab=95.71 E-value=0.71 Score=50.03 Aligned_cols=142 Identities=8% Similarity=0.038 Sum_probs=68.2
Q ss_pred CcEEEEEeCCC------eEEEEEccCCeeeEEccCC-CCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~g------~v~iwd~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~~~~ 153 (630)
+.++++|+.++ .+..||+.++......... .......+. -++..++.||.+ ..+..||..+.+-..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 45556665442 4778998887653211101 111122222 256677777755 357778876553211
Q ss_pred --EeecCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 154 --KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 154 --~~~~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
.+...... .+++ .-++++++.|+ +.+..||+.+.+-. ..++...... + +...++..++.||...
T Consensus 373 ~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 373 EPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGGISY 448 (534)
T ss_pred CCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECCccC
Confidence 11111111 1222 23566666665 35788998765422 1111111111 1 2233555556555311
Q ss_pred -------CeEEEEEcCCCc
Q 006808 222 -------RYIALWRTDGVK 233 (630)
Q Consensus 222 -------~~i~vwd~~~~~ 233 (630)
..+.+||..+.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCCCcccceEEEecCCCCc
Confidence 137888887764
No 398
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.58 E-value=0.88 Score=41.38 Aligned_cols=137 Identities=12% Similarity=0.191 Sum_probs=81.0
Q ss_pred cEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecCCCEEEEEeCC---C---cEEEE-eCCC----CceeE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGAD---G---MVCEI-DPLT----GSLLG 153 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g---~v~iw-d~~~----~~~~~ 153 (630)
..|++++..+.|.+|++.... ...++ ..-+.|..+.++..|++++|-=.+ . .+++| +.+. .++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 567777888899999998433 33344 344789999999999999986322 1 45665 2221 11211
Q ss_pred -Eeec---------------------CCCCeEEEEEcc-CCCEEEEeCCeEEEEECCCCce-ee-----Eee-----cCC
Q 006808 154 -KFRA---------------------STKGISCMAVSS-DGKMLATAAGQLKTFNCSDHKK-MQ-----KFS-----GHP 199 (630)
Q Consensus 154 -~~~~---------------------~~~~v~~l~~~p-~~~~l~~~~g~i~lwd~~~~~~-~~-----~~~-----~h~ 199 (630)
.+-+ ...++.+++..| .|++++.+.+.+.+|.+..... .. .|. -|.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 123567888888 5666666558999998754432 11 111 111
Q ss_pred -CCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 200 -GAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 200 -~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
.....++|. +.|++..+ +..++++.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS--DLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence 124455554 55776654 666777654
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.50 E-value=5.3 Score=44.39 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=65.2
Q ss_pred cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee--cCCCCeEEEEEeeC--CcE
Q 006808 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDN--GKY 213 (630)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~--~~~ 213 (630)
.|++++-. ..+..|....+ ++....+.+...++.++ +.+....+..+. ++... .....|.|+.++|- ++.
T Consensus 471 ~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred cEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence 36666633 23334443333 33333344444555444 455555655544 22222 23467999999975 333
Q ss_pred ---EEEEeeCCCeEEEEE-cCCCccccceeeeeecC--CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 214 ---VLSSAVGERYIALWR-TDGVKKQSASCVLAMEH--PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 214 ---l~~~~~~d~~i~vwd-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
+++.|.++..+.+.- ....... +...... -...+-...+. .|..+|.++..||.+..|.+
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~---~~~~l~~~~iPRSIl~~~~e-----~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILI---THEQLSGEIIPRSILLTTFE-----GDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCccee---eeeccCCCccchheeeEEee-----ccceEEEEEcCCceEEEEEE
Confidence 455555666554443 3332221 2222221 12222233343 46899999999998876643
No 400
>PHA02713 hypothetical protein; Provisional
Probab=95.39 E-value=0.56 Score=50.79 Aligned_cols=141 Identities=9% Similarity=0.086 Sum_probs=71.3
Q ss_pred CcEEEEEeCCC-----eEEEEEccCCeeeEEccCCCC-CCEEEEEEecCCCEEEEEeCCC--------------------
Q 006808 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGADG-------------------- 139 (630)
Q Consensus 86 ~~~l~~~~~~g-----~v~iwd~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg-------------------- 139 (630)
+.+.++|+.++ ++..||+.++.....-.-.+. .....+. -+|...+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccccc
Confidence 56667777654 388999988754311110111 1111222 2576677777542
Q ss_pred ---cEEEEeCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCC-Cc--eeeEeecCCCCeE
Q 006808 140 ---MVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSD-HK--KMQKFSGHPGAVR 203 (630)
Q Consensus 140 ---~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~-~~--~~~~~~~h~~~v~ 203 (630)
.+..||..+.+ .+..+...... .+++ .-++++.+.|+ ..+..||..+ .+ .+..++.......
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 46677776543 22222111111 1122 22566666665 1367899886 33 3333332222222
Q ss_pred EEEEeeCCcEEEEEeeCCC--eEEEEEcCCCc
Q 006808 204 FMTFSDNGKYVLSSAVGER--YIALWRTDGVK 233 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~ 233 (630)
.+.+ +|+..++|| .++ .+..||+.+.+
T Consensus 508 ~~~~--~~~iyv~Gg-~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH--DNTIMMLHC-YESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE--CCEEEEEee-ecceeehhhcCccccc
Confidence 2232 566667776 576 67777777665
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.071 Score=58.66 Aligned_cols=99 Identities=17% Similarity=0.239 Sum_probs=70.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEE
Q 006808 128 HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF 204 (630)
Q Consensus 128 ~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~ 204 (630)
.+..++.|+..|.+-..|+... .+...=....++|++++|+.+|++++.|- |.|.+||...++.++.+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557888888899988887643 11111122356999999999999998886 89999999999999888877777666
Q ss_pred EEE---eeCCcEEEEEeeCCCeEEEEEc
Q 006808 205 MTF---SDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 205 l~~---sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
+-+ ..++..++++. ..|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D-~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSD-TGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEcc-CCCc--eEEE
Confidence 544 34555555543 3453 5654
No 402
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.22 E-value=0.41 Score=48.54 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=92.9
Q ss_pred EECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
-...|..++. .|+....++-.|+..|+.+.++..+... -+.|.|.+.-.... ...-+
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt--------------------~eqtl 531 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMT--------------------DEQTL 531 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcC--------------------ccceE
Confidence 4455666555 4555667777899999999888866543 22333331100000 22235
Q ss_pred EEeCCCeEEEEEccCCe-eeEEc-cC--CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 91 LGTGGGDVLALAVSAGQ-LKWRL-SD--CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~-~~~~~-~~--~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
+|-.+..|.-.|++-.. .+... .. .......+..-. ...+++.+|..|.|++||--.-+....+.+.+..|..+.
T Consensus 532 vGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id 610 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID 610 (776)
T ss_pred EeecccceEEecccccCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence 66677777777775332 11111 00 011112222222 345899999999999999544444444677777999999
Q ss_pred EccCCCEEEEeC-CeEEEEECC
Q 006808 167 VSSDGKMLATAA-GQLKTFNCS 187 (630)
Q Consensus 167 ~~p~~~~l~~~~-g~i~lwd~~ 187 (630)
.+.+|+++++.+ ..+.+.|++
T Consensus 611 vta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 611 VTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eecCCcEEEEeecceEEEEecc
Confidence 999999988877 788888864
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.17 E-value=2.3 Score=47.07 Aligned_cols=174 Identities=10% Similarity=0.090 Sum_probs=105.0
Q ss_pred EEEEEccCCeeeEEccCCCCC---CEEEEEEecC-CCEEEEEe----------CCCcEEEEeCCCCceeEEeecC--CCC
Q 006808 98 VLALAVSAGQLKWRLSDCHPG---GVSAISFATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS--TKG 161 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~~~h~~---~v~~~~~s~~-g~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~--~~~ 161 (630)
++++|..+-+........... .|.++.|..| +.+++.|. ..|.|.+|.+..++.++....+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 667776666554332211112 3555668877 55666663 3467777776664333333222 234
Q ss_pred eEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+.++..- +|+++|.-+..|++|++.+.+.++.-..|..++..+...-.|..++++.. -+.+.+...+..+.. ...+.
T Consensus 832 v~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl-m~Sitll~y~~~eg~-f~evA 908 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL-MRSITLLQYKGDEGN-FEEVA 908 (1096)
T ss_pred eeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec-cceEEEEEEeccCCc-eEEee
Confidence 4444322 67788877789999999999877777778899999999999999998874 566666555444311 00112
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.--++.+...+-.. ++..++.+..+|.+++-..
T Consensus 909 rD~~p~Wmtaveil-------~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 909 RDYNPNWMTAVEIL-------DDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred hhhCccceeeEEEe-------cCceEEeecccccEEEEEe
Confidence 22234444443333 4556666677788877654
No 404
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=1.7 Score=41.34 Aligned_cols=156 Identities=11% Similarity=0.048 Sum_probs=98.3
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
++.+.|+|. .+.|++......-.||=...|+.+.++.-.--...-++.|..+|.+.++--.++.+.++.+.
T Consensus 88 vS~LTynp~---------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 88 VSSLTYNPD---------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccceeeCCC---------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 667777776 45577777777777777778888776654334456678888777777776678888888766
Q ss_pred CCceeEE----------eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-e--eeEeecCC-------CCeEEE
Q 006808 148 TGSLLGK----------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-K--MQKFSGHP-------GAVRFM 205 (630)
Q Consensus 148 ~~~~~~~----------~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~--~~~~~~h~-------~~v~~l 205 (630)
....... ........-.++|.|....|..+- +-+.||.+.... . +.....+. ..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 4422111 111244778999999888777776 544454443221 1 11111121 246778
Q ss_pred EEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 206 TFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 206 ~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.|++....|++-+.+++.+.-.|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 888766666666656777777776554
No 405
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.01 E-value=0.059 Score=48.78 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=71.9
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEE-
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA- 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~- 166 (630)
+..-+.+|.|.-+++...+...+....|...-.- ..-+..+++|+.+|.|.+|...-. .....+......|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 4445566777777665443322221222222111 123557899999999999987622 11111111222333322
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-CCeEEEEEeeCCcEEEEE--eeCCCeEEEEEcCC
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSS--AVGERYIALWRTDG 231 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~~~--~~~d~~i~vwd~~~ 231 (630)
...++.+..++. |.|+.|++.-++.+.....|. .++.....+..++++..+ + .|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS-HDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc-cchhhhhcchhh
Confidence 222344555554 899999998888777666666 344333333334444443 3 344555555443
No 406
>PHA03098 kelch-like protein; Provisional
Probab=95.00 E-value=1.6 Score=47.19 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=67.6
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCCcee--
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLL-- 152 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~~~~-- 152 (630)
+.+.+.|+.+ ..+..||+.++.....-...+...-.+++ .-+++.++.||.+ ..+..||+.+.+-.
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 5566667654 24778998877543111111111111222 2256666666632 35788888764321
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC-C---------eEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA-G---------QLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~-g---------~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
..+...... .++ ...++.+++.|+ . .+.+||..+++-. ..+.........+. -+++.++.+|..
T Consensus 422 ~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred CCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 111111111 122 223566666665 1 3788898776422 11111111111222 256666666532
Q ss_pred ----CCeEEEEEcCCCc
Q 006808 221 ----ERYIALWRTDGVK 233 (630)
Q Consensus 221 ----d~~i~vwd~~~~~ 233 (630)
.+.+.+||..+.+
T Consensus 498 ~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 498 YEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceeEEEeCCCCE
Confidence 1357777776654
No 407
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.00 E-value=0.093 Score=47.57 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-CCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (630)
..-+++|+.+|.|.+|+...-....... .+.......|.-..++.+.++++.||.|+.|++..++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 5568999999999999886322111111 1111222223333356678899999999999998887776666565 3444
Q ss_pred EEEEccCCCEEEEe--C--CeEEEEECC
Q 006808 164 CMAVSSDGKMLATA--A--GQLKTFNCS 187 (630)
Q Consensus 164 ~l~~~p~~~~l~~~--~--g~i~lwd~~ 187 (630)
.+..+..+.+++.+ + ..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 44444444454444 2 355555554
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.90 E-value=0.029 Score=60.23 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=76.8
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEE-----------EecCCCEEEEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS-----------FATHGSCIYSA 135 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~-----------~s~~g~~l~s~ 135 (630)
...-+.|++.-.. ..++..+..+|.|++.+..+... .++.+|...++.++ .+|||..|+.+
T Consensus 182 ~~~~V~wcp~~~~------~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a 253 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVN------KVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA 253 (1283)
T ss_pred Ccceeeecccccc------cceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence 4466788887654 45566677778887766655433 44456776665543 58999999999
Q ss_pred eCCCcEEEEeCC-----CCceeEEeecCCC-CeEEEEEccCC---------CEEEEeC---CeEEEEECCCCcee
Q 006808 136 GADGMVCEIDPL-----TGSLLGKFRASTK-GISCMAVSSDG---------KMLATAA---GQLKTFNCSDHKKM 192 (630)
Q Consensus 136 ~~dg~v~iwd~~-----~~~~~~~~~~~~~-~v~~l~~~p~~---------~~l~~~~---g~i~lwd~~~~~~~ 192 (630)
+.||.++.|.+. ..+|...++.|.+ +-.|.-++... .++++++ ..+++|.....+|+
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999999888754 3356677777774 33333343221 2344444 57888988777765
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.79 E-value=0.096 Score=34.92 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=29.9
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~ 151 (630)
...|.+++|+|...+|+.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 357999999999999999999999999998 5554
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=94.66 E-value=3.2 Score=44.16 Aligned_cols=140 Identities=6% Similarity=-0.103 Sum_probs=65.4
Q ss_pred CcEEEEEeCCC-----eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC--CcEEEEeCCCCceeEEeecC
Q 006808 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 86 ~~~l~~~~~~g-----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~ 158 (630)
+.++++|+.++ .+..||+.++.............-.+++ .-+|...+.||.+ ..+..||..+++- ..+..-
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W-~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAW-VNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeE-EECCCC
Confidence 44556666443 4778998887653211111111111122 2356666677653 3578888765422 111111
Q ss_pred CCCe-EEEEEccCCCEEEEeC-----CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 159 TKGI-SCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 159 ~~~v-~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
..+. ......-+|++.+.|+ ..+..||..+.+-.. .+....... + +..-+++..+.|| ...+||..
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~-~~~~~~~IYv~GG----~~e~ydp~ 423 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-C-ALVFGRRLFLVGR----NAEFYCES 423 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-e-EEEECCEEEEECC----ceEEecCC
Confidence 1111 1112223677777776 357788887654221 111111111 1 1233455444443 46778887
Q ss_pred CCc
Q 006808 231 GVK 233 (630)
Q Consensus 231 ~~~ 233 (630)
+.+
T Consensus 424 ~~~ 426 (480)
T PHA02790 424 SNT 426 (480)
T ss_pred CCc
Confidence 654
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.59 E-value=5 Score=39.32 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEE-CCCCcee
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFN-CSDHKKM 192 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd-~~~~~~~ 192 (630)
.-.+.+..+..+++|.+++++..-....-||--...-...-+.....|..|.|.|++.+.+++. |.|+.=+ .......
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence 3446788999999999888886666666787432111111222456899999999998877666 7888776 2222211
Q ss_pred eE--ee--cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee-cCCceeeeeEEecCCccCCCCCEE
Q 006808 193 QK--FS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYV 267 (630)
Q Consensus 193 ~~--~~--~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 267 (630)
.. .+ .....+..++|.+++...++++ .+.+ +.....++.- ...... .-+.....+.++. | ..-
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l-~~S~DgGktW--~~~~~~~~~~~n~~~i~f~~-----~--~~g 289 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTL-LVSTDGGKTW--QKDRVGENVPSNLYRIVFVN-----P--DKG 289 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES--TT-E-EEESSTTSS---EE-GGGTTSSS---EEEEEE-----T--TEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC--CccE-EEeCCCCccc--eECccccCCCCceEEEEEcC-----C--Cce
Confidence 11 11 1223478999999887777665 5544 3444555421 111111 2244556666664 3 344
Q ss_pred EEEecCCcEEEE
Q 006808 268 LAISETGVCYIW 279 (630)
Q Consensus 268 ~s~s~dg~i~iw 279 (630)
.+.+.+|.|.-|
T Consensus 290 f~lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLGQDGVLLRY 301 (302)
T ss_dssp EEE-STTEEEEE
T ss_pred EEECCCcEEEEe
Confidence 455677877655
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=4.7 Score=38.50 Aligned_cols=116 Identities=7% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-CCeEEEEEccCCCEEEEeC--CeEEEEECCCCce
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK 191 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~ 191 (630)
+-...+.++.|+|+.+.|++......-.+|=...|+.++++.-.. ...-.+.+..+|.++++-- +.++++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 445569999999999999998888877777767899988865322 2345677777776666554 6777776655422
Q ss_pred ee-----Eee----cC-CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 192 MQ-----KFS----GH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 192 ~~-----~~~----~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+. .++ .+ ....-.++|.|....|+++- +-+=+.||.+..
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~ 211 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQ 211 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEec
Confidence 11 111 12 44567899999988888765 444566665553
No 413
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.47 E-value=2.5 Score=45.84 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=90.6
Q ss_pred CcEEEEEeCCC------eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~g------~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~~~~~ 153 (630)
+.++++|+..+ .+..||+.++....-....+...-.++++. +|...++||.| .++..||..+.+ ..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-ee
Confidence 56677777764 388999998855422222233344455554 45677888888 367788877665 11
Q ss_pred EeecCCCCeEEEEE-ccCCCEEEEeC-------CeEEEEECCCCceeeEeecCCCCeEEEEE-eeCCcEEEEEeeCCC--
Q 006808 154 KFRASTKGISCMAV-SSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTF-SDNGKYVLSSAVGER-- 222 (630)
Q Consensus 154 ~~~~~~~~v~~l~~-~p~~~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~-sp~~~~l~~~~~~d~-- 222 (630)
.+..-..+-..... .-+|.+.++|+ .++..||..+.+--.. .....+..+... .-+|...+++| .++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG-~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGG-GDGSS 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcC-cCCCc
Confidence 11111111111111 12577777777 3788899877642111 111112222222 23466666655 343
Q ss_pred ----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 223 ----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 223 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
.+..||..+..-. ....+........+... ++...+.|+.||
T Consensus 441 ~~l~sve~YDP~t~~W~---~~~~M~~~R~~~g~a~~-------~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWT---LIAPMNTRRSGFGVAVL-------NGKIYVVGGFDG 486 (571)
T ss_pred cccceEEEEcCCCCcee---ecCCcccccccceEEEE-------CCEEEEECCccC
Confidence 5778888776522 22222222222222322 466777777776
No 414
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.42 E-value=5 Score=38.59 Aligned_cols=213 Identities=12% Similarity=0.140 Sum_probs=111.0
Q ss_pred cceeEeEECCCCCEEEEeeCCCcEEEEECC------CC-cEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 6 IRDILTSFSPALDYFAICSGDARIKIWDTL------KG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 6 V~~~~~~fs~dg~~las~s~dg~i~vwd~~------~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
|+.+-++|+|.+.+-++....+...+||.. .. .++-++..... .+.....+-+.|+..+.
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-------------~~~~~~PTGiVfN~~~~ 89 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-------------LAAEGTPTGQVFNGSDT 89 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-------------CCCCCCccEEEEeCCCc
Confidence 344567999999877777777899999986 11 12222221111 00111222233322110
Q ss_pred ---ccccccCCcEEEEEeCCCeEEEEEccCCee-----eEEccCCCCCCE-EEEEEec--CCCEEEEEe-CCCcEEEEeC
Q 006808 79 ---KKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGV-SAISFAT--HGSCIYSAG-ADGMVCEIDP 146 (630)
Q Consensus 79 ---~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~-----~~~~~~~h~~~v-~~~~~s~--~g~~l~s~~-~dg~v~iwd~ 146 (630)
....+.+...++.++.+|+|.-|...-+.. ...+.....+.| ..+++.. .+.+|+.+. ..++|.+||-
T Consensus 90 F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 90 FVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred eEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 000011245579999999999999743322 112211222333 3455543 356777665 6789999984
Q ss_pred CCCceeEE---eecCC-----CC-----------eEEEEEccCCCEEEEe-C-CeEEEEECCCCceeeEee--cCCCCeE
Q 006808 147 LTGSLLGK---FRAST-----KG-----------ISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFS--GHPGAVR 203 (630)
Q Consensus 147 ~~~~~~~~---~~~~~-----~~-----------v~~l~~~p~~~~l~~~-~-g~i~lwd~~~~~~~~~~~--~h~~~v~ 203 (630)
. .+.+.. |.... .+ |+-..-.++++.=+.+ + |-|-+||+ .|+.++++. +.-...+
T Consensus 170 ~-f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPW 247 (336)
T TIGR03118 170 S-FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPW 247 (336)
T ss_pred c-cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCc
Confidence 3 222111 11110 00 1111112222111111 2 68999996 677888774 2223445
Q ss_pred EEEEeeC-----CcEEEEEeeCCCeEEEEEcCCCc
Q 006808 204 FMTFSDN-----GKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 204 ~l~~sp~-----~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.|+..|- ...|+++-..||+|..||..+++
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 6666552 23456666789999999998876
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=0.95 Score=50.61 Aligned_cols=128 Identities=12% Similarity=-0.005 Sum_probs=78.6
Q ss_pred EEEEeCCCe-EEEEEccCCeee----EEcc------CCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCC-ceeEEe
Q 006808 89 LVLGTGGGD-VLALAVSAGQLK----WRLS------DCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTG-SLLGKF 155 (630)
Q Consensus 89 l~~~~~~g~-v~iwd~~~~~~~----~~~~------~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~-~~~~~~ 155 (630)
.++-+.+|. |..||+.+-..- ...+ ......+.++.|+|.-.. .+.+..|+.|++.-+... +.+..+
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~ 195 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF 195 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence 344444454 889998653211 0111 112234678888885433 566678888888766432 222222
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC----CCCeEEEEEeeCCcEEEEEe
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~~~~ 218 (630)
. ....++|++|+|.|+.+++|. |++.-|-. .++....+.+. ...|.+|+|-....++++-+
T Consensus 196 p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 196 P-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred C-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 3 345789999999999999998 78877764 33333333322 36799999987777766643
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.33 E-value=5.7 Score=38.92 Aligned_cols=137 Identities=14% Similarity=0.156 Sum_probs=72.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC-CCCceeEE----eecCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK----FRASTK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~-~~~~~~~~----~~~~~~ 160 (630)
+.+++++....-..-|+.-...-.... ......|.++.|.|++...+.+ ..|.|+.=+. ........ +.....
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred CcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 566666544444567876543222121 2345789999999998765544 8888887762 22222111 111223
Q ss_pred CeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
.+..++|.+++...++|+ |.+ +.....|+.-..-+ .-......|.|.+..+-++.+ .+|.|--|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence 588999999998888888 544 45556666544432 224568889998777766665 48876544
No 417
>PHA02790 Kelch-like protein; Provisional
Probab=94.13 E-value=4.7 Score=42.89 Aligned_cols=140 Identities=10% Similarity=-0.029 Sum_probs=64.0
Q ss_pred CcEEEEEeCC--CeEEEEEccCCeeeEEccCCCCC-CEEEEEEecCCCEEEEEeCCC---cEEEEeCCCCceeE--Eeec
Q 006808 86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLG--KFRA 157 (630)
Q Consensus 86 ~~~l~~~~~~--g~v~iwd~~~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~s~~~dg---~v~iwd~~~~~~~~--~~~~ 157 (630)
+.+.++|+.+ ..+..||+.++.......-.+.. ....+. -+|+..+.||.++ .+..||..+.+=.. .+..
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 5555666643 34888998776543111111111 111222 2566667777543 46778876543111 1111
Q ss_pred CCCCeEEEEEccCCCEEEEeCCeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeCC----CeEEEEEcCC
Q 006808 158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDG 231 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~d----~~i~vwd~~~ 231 (630)
..... ++ ..-++++.+. +|.+.+||..+++-. ..++...... +++ .-+|+..++||... ..+..||..+
T Consensus 397 ~r~~~-~~-~~~~~~IYv~-GG~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 397 PHYKS-CA-LVFGRRLFLV-GRNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ccccc-eE-EEECCEEEEE-CCceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 11111 22 2234544444 456778888765422 2222111122 222 23566666665311 2455666655
Q ss_pred C
Q 006808 232 V 232 (630)
Q Consensus 232 ~ 232 (630)
.
T Consensus 472 ~ 472 (480)
T PHA02790 472 Y 472 (480)
T ss_pred C
Confidence 4
No 418
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.95 E-value=1.7 Score=45.33 Aligned_cols=117 Identities=9% Similarity=0.077 Sum_probs=72.4
Q ss_pred CCCCEEEEEEecC----CCEEEEEeCCCcEEEEeCC-----CCceeEEeecCC-C--C--eEEEEEccCCCEEEEeC-Ce
Q 006808 116 HPGGVSAISFATH----GSCIYSAGADGMVCEIDPL-----TGSLLGKFRAST-K--G--ISCMAVSSDGKMLATAA-GQ 180 (630)
Q Consensus 116 h~~~v~~~~~s~~----g~~l~s~~~dg~v~iwd~~-----~~~~~~~~~~~~-~--~--v~~l~~~p~~~~l~~~~-g~ 180 (630)
.-..|.++.|.|- -..+++.-....|.+|.+. +++.+.....+- . + -..+.|+|....|++-. ..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3356899999884 3356666778899999875 222222211111 1 1 24578999988887765 33
Q ss_pred E-EEEECCC--CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 181 L-KTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 181 i-~lwd~~~--~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+ .++++.. .+....+ ...+.|.|.+|.+||+.|+++-...=.-++||-....
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 3 3344432 2333334 3567899999999999888765223356888865543
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.88 E-value=6.3 Score=37.76 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=66.7
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEe-CCCCceeE-EeecC--CCCeEEEEEccCCCEEEEeC-----CeEEEEECC-
Q 006808 118 GGVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLG-KFRAS--TKGISCMAVSSDGKMLATAA-----GQLKTFNCS- 187 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~dg~v~iwd-~~~~~~~~-~~~~~--~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~- 187 (630)
..+....|++++...+....+...+++. ..++.... .+... ...|..+.++|||..++... +.|++--+.
T Consensus 66 ~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 66 GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 3678889999976655555566666663 33333221 12211 12899999999999887654 566665443
Q ss_pred --CC--c----eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 188 --DH--K----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 188 --~~--~----~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.+ . .+.........++.+.|.+++.+++.+...+..+..
T Consensus 146 ~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 146 DGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 22 1 111122334678999999999887777655554443
No 420
>PRK10115 protease 2; Provisional
Probab=93.67 E-value=14 Score=41.17 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=58.9
Q ss_pred CcEEEEEe-CCCe----EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCC--cee
Q 006808 86 SSLLVLGT-GGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG--SLL 152 (630)
Q Consensus 86 ~~~l~~~~-~~g~----v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~--~~~ 152 (630)
+++|+.+. .+|. |++.|+.+|..+.....+ .-..++|.+|++.|+.+..+ ..|+.+++.++ +..
T Consensus 138 g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~ 214 (686)
T PRK10115 138 NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE 214 (686)
T ss_pred CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence 55555544 3343 889999888744333221 12569999999876655432 36888888887 334
Q ss_pred EEeecCCCCeE-EEEEccCCCEEEEeC-----CeEEEEEC
Q 006808 153 GKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNC 186 (630)
Q Consensus 153 ~~~~~~~~~v~-~l~~~p~~~~l~~~~-----g~i~lwd~ 186 (630)
..+........ .+..+.++++++..+ +.+.+|+.
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 44554333333 333344787766544 47888884
No 421
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=4.3 Score=36.61 Aligned_cols=171 Identities=11% Similarity=0.082 Sum_probs=91.2
Q ss_pred CCCEEEEeeC--CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-EEE
Q 006808 16 ALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLG 92 (630)
Q Consensus 16 dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~ 92 (630)
+|.++.+.+. ...|++||+.+|+.+.+-+-.. ...|.. .++.+ ++.+ ..-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~FgE---------Git~~--------------gd~~y~LT 107 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTVFGE---------GITKL--------------GDYFYQLT 107 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC----cccccc---------ceeec--------------cceEEEEE
Confidence 3455555543 4579999999998876543210 011111 11100 3333 334
Q ss_pred eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC--CCC---eEEEEE
Q 006808 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKG---ISCMAV 167 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~---v~~l~~ 167 (630)
-.+|.-..||..+-+++.++. ..+.=.+++ .|+..|+.++...+++.-|..+.....++... ..+ +.-+.|
T Consensus 108 w~egvaf~~d~~t~~~lg~~~--y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~ 183 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFS--YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW 183 (262)
T ss_pred eccceeEEEChHHhhhhcccc--cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee
Confidence 456778899998888775553 333344444 36667777766777877777655443332211 112 222333
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEe------------ecCCCCeEEEEEeeCCcEEEEEe
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKF------------SGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~------------~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
- +|...|-.- ..|...+..+|+.+..+ ..|..-.+.+++.|++..|+.+|
T Consensus 184 V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 184 V-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred e-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2 343333221 34445555666554432 22344567889999886666555
No 422
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.45 E-value=0.043 Score=54.43 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=5.5
Q ss_pred HHHHHHHHHhcccc
Q 006808 529 QWIYFILVNHGHHL 542 (630)
Q Consensus 529 ~wl~~ll~~h~~~l 542 (630)
-||+.- ..|...|
T Consensus 14 dWi~~~-~~~~~Kl 26 (458)
T PF10446_consen 14 DWIRQD-TDYKRKL 26 (458)
T ss_pred hhhhcc-ccccccc
Confidence 355444 3343333
No 423
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.40 E-value=9.5 Score=38.27 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=21.7
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (630)
.++|.|||++|++ ...|+|++++ ..+..
T Consensus 6 ~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 6 SMAFLPDGRLLVA-ERSGRIWVVD-KDGSL 33 (331)
T ss_dssp EEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred EEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence 5699999988775 4589999999 44544
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.40 E-value=5.1 Score=44.46 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=28.6
Q ss_pred CCCCCEEEEEEecC---CCEEEEEeCCCcEEEEeCCCC
Q 006808 115 CHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 115 ~h~~~v~~~~~s~~---g~~l~s~~~dg~v~iwd~~~~ 149 (630)
.+...|..+.|+|. +.+|+.-..|+++++||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 34567899999985 578888889999999998654
No 425
>PRK10115 protease 2; Provisional
Probab=93.40 E-value=16 Score=40.82 Aligned_cols=188 Identities=8% Similarity=0.044 Sum_probs=93.2
Q ss_pred eEECCCCCEEEEeeC-----CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 11 TSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 11 ~~fs~dg~~las~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
+.+||||++||.+.. ..+|++-|+.+|..+...- .... ..+.|.+.+
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------------------~~~~-~~~~w~~D~-------- 183 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------------------DNVE-PSFVWANDS-------- 183 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------------------cCcc-eEEEEeeCC--------
Confidence 478999999987643 2357788888775322110 0111 236776542
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCe--eeEEccCCCCCCEE-EEEEecCCCEEEEEe---CCCcEEEEeCC--CCcee
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQ--LKWRLSDCHPGGVS-AISFATHGSCIYSAG---ADGMVCEIDPL--TGSLL 152 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~--~~~~~~~~h~~~v~-~~~~s~~g~~l~s~~---~dg~v~iwd~~--~~~~~ 152 (630)
..++++.... ..|+.+++.++. -. .+......... .+..+.++++++..+ .++.+.+++.. ++...
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~ 262 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF 262 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce
Confidence 3344443322 358888988872 22 12222222233 333344788755443 34578888843 34432
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecC-C-CCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGH-P-GAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h-~-~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
..+.........+. +..+.+++... ..|...++........+..+ . ..+..+.+. +.+|+.....++.-+
T Consensus 263 ~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~ 339 (686)
T PRK10115 263 VFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTS 339 (686)
T ss_pred EEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEE
Confidence 22332222223332 33334444333 24444455421222334334 3 367777777 445665555677655
Q ss_pred EEEcC
Q 006808 226 LWRTD 230 (630)
Q Consensus 226 vwd~~ 230 (630)
++-+.
T Consensus 340 l~~~~ 344 (686)
T PRK10115 340 LRQIN 344 (686)
T ss_pred EEEEc
Confidence 55443
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.37 E-value=1.5 Score=47.22 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=66.6
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-cCCCCeEEEEEc--cCCCEEEEeC--CeEEEEECC-----C----
Q 006808 123 ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKGISCMAVS--SDGKMLATAA--GQLKTFNCS-----D---- 188 (630)
Q Consensus 123 ~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~--p~~~~l~~~~--g~i~lwd~~-----~---- 188 (630)
+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|. |+|..+++.+ +.|.+|.-. +
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3334444444444445589999999887544322 346789999995 5777666655 788887431 1
Q ss_pred CceeeEe--ecCC-CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 189 HKKMQKF--SGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 189 ~~~~~~~--~~h~-~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
...++.+ ..|+ .+|.+..|.++|..++.+ ++.+.|++-.
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s---GNqlfv~dk~ 156 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS---GNQLFVFDKW 156 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEe---CCEEEEECCC
Confidence 1233333 3444 579999999999766554 4578888743
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=0.48 Score=52.79 Aligned_cols=153 Identities=7% Similarity=-0.034 Sum_probs=93.3
Q ss_pred eEeEECCCCCEEEEeeC--CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
+.+...+|++..++... +-.|..||+.+-..-.... .. -++++.. .-....-..|+.|+|.- .
T Consensus 104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~---~~--pl~~s~t--s~ek~vf~~~~~wnP~v--------p 168 (1405)
T KOG3630|consen 104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET---TV--PLKNSAT--SFEKPVFQLKNVWNPLV--------P 168 (1405)
T ss_pred eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh---cc--ccccccc--hhccccccccccccCCc--------c
Confidence 44477788876665543 3468888886533211000 00 0000000 01113345678898775 3
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec----CCCCe
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI 162 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v 162 (630)
...+++..|+.|++..+........-. .....+++++|+|.|+.++.|-..|++.-|-.. .+....+.. ....|
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrv 246 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRV 246 (1405)
T ss_pred chhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcce
Confidence 346788889999888775443322221 345678999999999999999999999888743 333333322 13589
Q ss_pred EEEEEccCCCEEEEeC
Q 006808 163 SCMAVSSDGKMLATAA 178 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~ 178 (630)
.+++|-....++++-+
T Consensus 247 l~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 247 LSVTWLSTQEFLVVYG 262 (1405)
T ss_pred eEEEEecceeEEEEec
Confidence 9999988777777654
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=93.19 E-value=10 Score=38.06 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=81.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEE-EeCCCCceeEEee-cCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceee
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCE-IDPLTGSLLGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~i-wd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~ 193 (630)
.+.+.++.+.|++.+++++ ..|.+.. +| ..++...... .....++++.+.|+++.++++. |.+++=....|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 4568899999987655554 5565443 22 1223222222 2345789999999999888887 666532344443322
Q ss_pred Eeec----CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeee-ecCCceeeeeEEecCCccCCCCCEEE
Q 006808 194 KFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 194 ~~~~----h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
.... ....+.++.|.|++..+++ + .+|.+. .....++.- ..... ...+......+.. .++. .+
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G-~~G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~~~~------~~~~-~~ 317 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-G-GNGTLL-VSKDGGKTW--EKDPVGEEVPSNFYKIVFL------DPEK-GF 317 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-c-CCCeEE-EeCCCCCCC--eECCcCCCCCcceEEEEEe------CCCc-eE
Confidence 2211 1235788899998776554 4 366554 344444321 11110 1112233344443 2334 44
Q ss_pred EEecCCcEEEEEc
Q 006808 269 AISETGVCYIWYG 281 (630)
Q Consensus 269 s~s~dg~i~iwd~ 281 (630)
+.+..|.|.-|+.
T Consensus 318 ~~G~~G~il~~~~ 330 (334)
T PRK13684 318 VLGQRGVLLRYVG 330 (334)
T ss_pred EECCCceEEEecC
Confidence 5566688877764
No 429
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.98 E-value=2.6 Score=46.70 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.|..+.++|+|.+++..|..| |.|..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 488889999999988888766 444444
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.96 E-value=3.9 Score=41.80 Aligned_cols=19 Identities=11% Similarity=0.425 Sum_probs=14.5
Q ss_pred CCEEEEEEecCCCEEEEEe
Q 006808 118 GGVSAISFATHGSCIYSAG 136 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~ 136 (630)
.....++|.|||.+.++.+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ccccCceECCCCCEEEecc
Confidence 4578899999998766554
No 431
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.89 E-value=9.1 Score=36.66 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=52.9
Q ss_pred CcEEEEEeCCCeEEEEE-ccCCeeeE-Ecc-CCCCCCEEEEEEecCCCEEEEEe---CCCcEEEEeCC---CC------c
Q 006808 86 SSLLVLGTGGGDVLALA-VSAGQLKW-RLS-DCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPL---TG------S 150 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd-~~~~~~~~-~~~-~~h~~~v~~~~~s~~g~~l~s~~---~dg~v~iwd~~---~~------~ 150 (630)
+.+.++...+....++. ...+.... .+. ..-...|+++.++|||..++... .++.|.+--+. .+ .
T Consensus 77 g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 77 GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 44445555555555553 33332211 111 11112899999999999876654 34666665443 22 1
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEeC
Q 006808 151 LLGKFRASTKGISCMAVSSDGKMLATAA 178 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 178 (630)
...........+..+.|.+++.+++.+.
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeC
Confidence 1122222345889999999998887776
No 432
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.79 E-value=4.8 Score=43.92 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCeEEEEEccC-------C----ee-------eEEccCCCCCCEEEEEEe--cCCCEEEEEeCCCcEEEEe
Q 006808 86 SSLLVLGTGGGDVLALAVSA-------G----QL-------KWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEID 145 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~-------~----~~-------~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~v~iwd 145 (630)
...|++|+.+|.|.+|.+.+ . .. ...+.......+++++++ ...++|++++....|.+|-
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 67899999999999997631 0 00 001111233578999998 7777788888888888876
Q ss_pred CCCC--ce-eEEeecCCCCeEEEEEccCC-----C-EEEEeC--CeEEEEEC
Q 006808 146 PLTG--SL-LGKFRASTKGISCMAVSSDG-----K-MLATAA--GQLKTFNC 186 (630)
Q Consensus 146 ~~~~--~~-~~~~~~~~~~v~~l~~~p~~-----~-~l~~~~--g~i~lwd~ 186 (630)
+... +. ...-..+...|-+|+|-++. . +|++++ |.+.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5432 11 11111245578899997643 2 566666 88887776
No 433
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.22 E-value=15 Score=37.54 Aligned_cols=202 Identities=18% Similarity=0.191 Sum_probs=107.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-CCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (630)
...+++++.+|.|.-.|..++..++...... ...+.+-.+..+|+ ++.++.++.+..+|..+|+.+..+.... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 5567888899999999999998776543222 12333333444665 8888889999999998999888877655 1122
Q ss_pred EEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCC---CCeEEEEEeeCCcEEEEEeeC--CCeEEEEEcCCCccccc
Q 006808 164 CMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA 237 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~---~~v~~l~~sp~~~~l~~~~~~--d~~i~vwd~~~~~~~~~ 237 (630)
.-.+..++..++... +.++..|..+|+..-...... ..+..-....++. ++.+. . ++.+.-.+...+...-.
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~-~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGS-DGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEec-CCCcceEEEEEccCCcEeee
Confidence 223333554444433 888888888887755543211 1111111122232 33332 2 34566666666653310
Q ss_pred e-eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 238 S-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
. ........... ....+....+ --+.-+..++.+|.+.-.+..+++.+-....
T Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~v-~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 225 QKVSQTIGRTAIS-TTPAVDGGPV-YVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeecccCccccc-ccccccCceE-EECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 0 00111111000 0000000000 0122345666777788888888877665544
No 434
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.14 E-value=16 Score=37.66 Aligned_cols=183 Identities=8% Similarity=0.025 Sum_probs=105.8
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-----------------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----------------- 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~----------------- 148 (630)
..+|.+-+.||.+.+|+-..-.....+ .. .--.-.++|.+.-..|++++.+..+..|....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~l-p~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~ 222 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFL-PD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD 222 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEc-CC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence 478899999999999987655433222 22 22334577888888899999888888886421
Q ss_pred ---Cce---eEEeecCCCCeEEEE---Ecc-CCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEE-EEe------eCC
Q 006808 149 ---GSL---LGKFRASTKGISCMA---VSS-DGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFM-TFS------DNG 211 (630)
Q Consensus 149 ---~~~---~~~~~~~~~~v~~l~---~~p-~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l-~~s------p~~ 211 (630)
++. -.++.. ...+..+. ++. ...+++.|-.++.+.+- +|......+ ......++ .|. |+.
T Consensus 223 ~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 223 ISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPST 299 (418)
T ss_pred ccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCC
Confidence 110 111221 22333333 332 33455555588888885 565433222 23222222 222 221
Q ss_pred c-EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 212 K-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 212 ~-~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+ .+++++ .++++.||.=.+-. ......+....+....+. .-...|++-+.+|.+.+--+-|.
T Consensus 300 ~~~llV~t-~t~~LlVy~d~~L~-----WsA~l~~~PVal~v~~~~-----~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 300 RLNLLVGT-HTGTLLVYEDTTLV-----WSAQLPHVPVALSVANFN-----GLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred ceEEEEEe-cCCeEEEEeCCeEE-----EecCCCCCCEEEEecccC-----CCCceEEEEcCCCcEEEEEeCCC
Confidence 1 355555 68999998643322 233344555556656554 44678999999999998765443
No 435
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.11 E-value=6 Score=40.38 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=60.9
Q ss_pred eEEEEEccCC--ee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-----Cce--e-EEeecC----CCC
Q 006808 97 DVLALAVSAG--QL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSL--L-GKFRAS----TKG 161 (630)
Q Consensus 97 ~v~iwd~~~~--~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-----~~~--~-~~~~~~----~~~ 161 (630)
.|.+++-..+ +. ..+.+...-....++++.++| +++++.....++.|... ++. + ..+... ...
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~ 125 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHS 125 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccc
Confidence 6777765433 21 112222223456889999888 44444444333435431 111 1 123221 234
Q ss_pred eEEEEEccCCCEEEEeC---------------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 162 ISCMAVSSDGKMLATAA---------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~---------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
...++|.|||.+.++.+ |.|.-++..+++. ..+...-.....++|+|+|..+++-
T Consensus 126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence 67899999998766443 1244444444332 2222122334678999998877653
No 436
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.73 E-value=20 Score=37.89 Aligned_cols=116 Identities=11% Similarity=0.126 Sum_probs=68.7
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC-----CeeeEEcc--CCCCCC--EEEEEEecCCCEEEEEeC
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-----GQLKWRLS--DCHPGG--VSAISFATHGSCIYSAGA 137 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~-----~~~~~~~~--~~h~~~--v~~~~~s~~g~~l~s~~~ 137 (630)
.+..+.|.|..... .-.+++.-....|.||.+.. ++...... .+..-+ ..++.|+|....|+.-..
T Consensus 58 hV~GlsW~P~~~~~-----~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 58 HVHGLSWAPPCTAD-----TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeeeeeecCcccCC-----CCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 35567787765331 22355556667799999862 22221111 011112 357889998887766554
Q ss_pred CCcEEEEeCCCC--ceeEEeecCCCCeEEEEEccCCCEEEEeCC---eEEEEECCC
Q 006808 138 DGMVCEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAAG---QLKTFNCSD 188 (630)
Q Consensus 138 dg~v~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~g---~i~lwd~~~ 188 (630)
...-.++++... +....++ ..+.|.|.+|.+||..|+++-| .-++||-..
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 444345555432 2223343 4578999999999998887763 568898543
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.62 E-value=11 Score=34.56 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=63.0
Q ss_pred CEEEEEeCCCcEEEEeCC--CCceeEEeecCCCCeEEEEEccCCCEEEEeC-----C---eEEEE-ECCC----Cceee-
Q 006808 130 SCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSSDGKMLATAA-----G---QLKTF-NCSD----HKKMQ- 193 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g---~i~lw-d~~~----~~~~~- 193 (630)
..|+.+...+.|.+|++. ..+....|..- +.|..+.++..|++|++-- . .+|+| |.+. ..+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667789999988 34556667744 7899999999999999964 3 56664 2221 12222
Q ss_pred EeecC---------------------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 194 KFSGH---------------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 194 ~~~~h---------------------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.+.|| ..++.+++.-|..-.|++++ ++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence 22232 22445666556444455554 6689999886654
No 438
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.54 E-value=7.3 Score=32.57 Aligned_cols=107 Identities=15% Similarity=0.216 Sum_probs=66.9
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCC--------ceeEEeecCCCCeEEEEEcc-----CCCEEEEeC-CeEEEEECCC
Q 006808 123 ISFATHGSCIYSAGADGMVCEIDPLTG--------SLLGKFRASTKGISCMAVSS-----DGKMLATAA-GQLKTFNCSD 188 (630)
Q Consensus 123 ~~~s~~g~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~l~~~p-----~~~~l~~~~-g~i~lwd~~~ 188 (630)
-.|......|++++.-|.|.+++.... ..++.+. -...|++++-.| +...|+.|+ .++..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 455555556888888889999986532 2334444 345677775543 356788888 8999999988
Q ss_pred CceeeEeecCCCCeEEEEEee----CCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 189 HKKMQKFSGHPGAVRFMTFSD----NGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp----~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..-+.. +.-...|.++.+-. ....++++| +..|.-||....+
T Consensus 83 N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG--ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG--NCSIQGFDYEGNE 128 (136)
T ss_pred Cchhhh-hhCccceeEEEEEecCCCCCcEEEECc--eEEEEEeCCCCcE
Confidence 764422 22345677776632 233444443 6777777765543
No 439
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.38 E-value=18 Score=36.64 Aligned_cols=191 Identities=15% Similarity=0.250 Sum_probs=104.3
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC-
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~- 94 (630)
...+++....++-+.+||+. |+.+..+.........+.+. +.+ ..+ ..-|++++.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvryg--------------f~l---~g~------~vDlavas~R 122 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYG--------------FPL---NGK------TVDLAVASDR 122 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEE--------------EEE---TTE------EEEEEEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecc--------------eec---CCc------eEEEEEEecC
Confidence 34566766778889999986 66666553211100011110 111 100 111344443
Q ss_pred C---CeEEEEEcc--CCeeeEEccC-CC-----CCCEEEEEEe--c-CCC-EEEEEeCCCcEEEEeCC---CC----cee
Q 006808 95 G---GDVLALAVS--AGQLKWRLSD-CH-----PGGVSAISFA--T-HGS-CIYSAGADGMVCEIDPL---TG----SLL 152 (630)
Q Consensus 95 ~---g~v~iwd~~--~~~~~~~~~~-~h-----~~~v~~~~~s--~-~g~-~l~s~~~dg~v~iwd~~---~~----~~~ 152 (630)
+ ..|++|.+. ++... .+.. .+ ...+..+|+. + +|. +++..+.+|.+..|-+. .+ +.+
T Consensus 123 ~~g~n~l~~f~id~~~g~L~-~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV 201 (381)
T PF02333_consen 123 SDGRNSLRLFRIDPDTGELT-DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV 201 (381)
T ss_dssp CCCT-EEEEEEEETTTTEEE-E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE
T ss_pred cCCCCeEEEEEecCCCCcce-EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE
Confidence 2 358888765 34332 2211 11 1246777774 3 455 46667788988888764 23 457
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC-----CceeeEeec--CCCCeEEEEEee--CC-cEEEEEeeC
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NG-KYVLSSAVG 220 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~-----~~~~~~~~~--h~~~v~~l~~sp--~~-~~l~~~~~~ 220 (630)
+.|.. ...+..|.......+|..+- .-|.-|+... ++.+....+ ....|-.|++.. ++ .||++++..
T Consensus 202 R~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 202 REFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp EEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred EEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 77775 34788888988877888887 3555566542 222322222 345788888754 33 488888877
Q ss_pred CCeEEEEEcCCC
Q 006808 221 ERYIALWRTDGV 232 (630)
Q Consensus 221 d~~i~vwd~~~~ 232 (630)
+++..||+....
T Consensus 281 ~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 281 DNSFAVYDREGP 292 (381)
T ss_dssp GTEEEEEESSTT
T ss_pred CCeEEEEecCCC
Confidence 889999997764
No 440
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.36 E-value=13 Score=35.16 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=110.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee----cCCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----ASTKG 161 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~~ 161 (630)
+..-+.+...|.|--.|..+|+.. ++..+.......|..-|||..-++-+.. -|.-.|-++.... .|. .....
T Consensus 73 G~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~~a~~n 149 (353)
T COG4257 73 GAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLEHADAN 149 (353)
T ss_pred CceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-EeecccccCCCc
Confidence 556677778888888899999876 3333555667788888888765544333 4556665554432 222 22346
Q ss_pred eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecC-CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.....|.+.|.+.+++. |----.|..+ ..+..|... ...-..|+..|+|...+++- .+..|-..|...+...
T Consensus 150 let~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaiaridp~~~~ae---- 223 (353)
T COG4257 150 LETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIARIDPFAGHAE---- 223 (353)
T ss_pred ccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEec-cccceEEcccccCCcc----
Confidence 77889999999988876 2111112211 123344322 23456788899998777654 5778888887776432
Q ss_pred eeeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 240 VLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.+..... ..-.+-++.. |.|+.-++....|.++-||-.+
T Consensus 224 v~p~P~~~~~gsRriwsd-----pig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 224 VVPQPNALKAGSRRIWSD-----PIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eecCCCcccccccccccC-----ccCcEEEeccCCceeeEeCccc
Confidence 1121111 2223334444 7777777777777888777543
No 441
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=9.2 Score=38.75 Aligned_cols=143 Identities=9% Similarity=0.132 Sum_probs=87.2
Q ss_pred EEEEeCCCeEEEEEccC--CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce----eEEeecCCCCe
Q 006808 89 LVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRASTKGI 162 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~--~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~v 162 (630)
.+.|...|.+.=|-+.. ......+.-...++|.++.|++|++.++.--.+.+|.+++....+. ..+.+.....|
T Consensus 36 qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~I 115 (657)
T KOG2377|consen 36 QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANI 115 (657)
T ss_pred eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCccee
Confidence 45555555555554432 2333344434567999999999999999999999999999743322 22233344568
Q ss_pred EEEEEccCCCEEEEeCCeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEee-CCCeEEEEEcCC
Q 006808 163 SCMAVSSDGKMLATAAGQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG 231 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~-~d~~i~vwd~~~ 231 (630)
....|+.+....+....-+-+|.+... +.++..+.|...|.--.|.++.+.++-+++ ..+.+.=+.+++
T Consensus 116 lGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 116 LGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 899998764433333333455544332 234555677888888888888776554443 334444444443
No 442
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.14 E-value=1.3 Score=41.19 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=23.9
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCcee
Q 006808 125 FATHGSCIYSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 125 ~s~~g~~l~s~~~dg~v~iwd~~~~~~~ 152 (630)
+...++++++.+.+|.+++||+.+++.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 4457889999999999999999988764
No 443
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=90.81 E-value=0.22 Score=56.23 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHH
Q 006808 575 RLQLTMAQIDRA 586 (630)
Q Consensus 575 ~l~~~~~~~~~~ 586 (630)
-|++++..+..+
T Consensus 624 ~l~~ll~vl~~~ 635 (784)
T PF04931_consen 624 GLQLLLDVLDAK 635 (784)
T ss_pred HHHHHHHHhccC
Confidence 566666666643
No 444
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.77 E-value=2.5 Score=39.84 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=73.6
Q ss_pred EEEEeCCCCceeEEeecC-CCCeEEEEEccCCCEEEEeC-----CeEEEEECCC---CceeeEee---cCCCCeEEEEEe
Q 006808 141 VCEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA-----GQLKTFNCSD---HKKMQKFS---GHPGAVRFMTFS 208 (630)
Q Consensus 141 v~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~---~~~~~~~~---~h~~~v~~l~~s 208 (630)
-.+||+.+++.. .+... .....+-.+.|||++|.+|+ ..+++++..+ ........ ....+--.+..-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 357888776543 22222 22333446778999999987 3688888654 11111111 112223334445
Q ss_pred eCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-----CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
|||+.|+.+|...-+..+|.-....... .....+. ......-.++.- |+|+.++.+..++ .|||..+
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~-~~~~~l~~~~~~~~~nlYP~~~ll-----PdG~lFi~an~~s--~i~d~~~ 198 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGP-VTLPFLSQTSDTLPNNLYPFVHLL-----PDGNLFIFANRGS--IIYDYKT 198 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCc-eeeecchhhhccCccccCceEEEc-----CCCCEEEEEcCCc--EEEeCCC
Confidence 7999999998654455555542221110 0010010 111122223333 8999998887754 4568777
Q ss_pred ccccccc
Q 006808 284 IEELRNT 290 (630)
Q Consensus 284 ~~~~~~~ 290 (630)
.+.++..
T Consensus 199 n~v~~~l 205 (243)
T PF07250_consen 199 NTVVRTL 205 (243)
T ss_pred CeEEeeC
Confidence 6554443
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.64 E-value=3.9 Score=41.84 Aligned_cols=134 Identities=16% Similarity=0.277 Sum_probs=82.7
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-------EEEEEeCCCcEEEEeCCC-CceeEEee--c--CC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLT-GSLLGKFR--A--ST 159 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-------~l~s~~~dg~v~iwd~~~-~~~~~~~~--~--~~ 159 (630)
|.....++-.|+..|+.+-.... |.. | -+.|.|..+ .-+.|-.+..|.-.|.+- |..+.... . ..
T Consensus 486 g~~~~kLykmDIErGkvveeW~~-~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDL-KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred CCCcccceeeecccceeeeEeec-CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence 34445577788888888765542 433 2 566776432 123344455566666553 32222211 1 11
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
....|..-..+| ++|+++ |.|++||--.-+....+++....|..+..+.+|++++++| ..+|-+-|++-
T Consensus 563 n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 563 NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence 233344333344 777777 9999999654444455677888999999999999999887 56788887654
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.45 E-value=6 Score=40.77 Aligned_cols=94 Identities=11% Similarity=0.169 Sum_probs=50.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecC
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH 198 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h 198 (630)
.|..+..++.|..++-+|.+|.+.++=.+..-.-..+...+..|.|=.+.-+. .+++.+ .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss-------------------~ 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS-------------------T 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC-------------------C
Confidence 46778888999998888889866555433222222333322333333332221 111111 1
Q ss_pred CCCeEEEEEeeCC---cEEEEEeeCCCeEEEEEcCCCc
Q 006808 199 PGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 199 ~~~v~~l~~sp~~---~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.-.+..++|+|+. ..|+.-. .|..|++|++...+
T Consensus 165 ~ltl~Qa~WHP~S~~D~hL~iL~-sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 165 SLTLKQAAWHPSSILDPHLVLLT-SDNVIRIYSLSEPT 201 (741)
T ss_pred ceeeeeccccCCccCCceEEEEe-cCcEEEEEecCCcc
Confidence 1234556677754 3455544 37888888876654
No 447
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.37 E-value=19 Score=35.24 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=78.9
Q ss_pred eEEEEEccCCeeeEEccCC-----CCCCEEEEEEecCC-----CEEEEE-eCCCcEEEEeCCCCceeEEeecC-------
Q 006808 97 DVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHG-----SCIYSA-GADGMVCEIDPLTGSLLGKFRAS------- 158 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~-----h~~~v~~~~~s~~g-----~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~------- 158 (630)
+|.+||+.+++.+.++... ..+.+..+.+.... .+++.+ +..+-+.++|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 4778888888876555322 23567888887622 244444 34457999999988765554321
Q ss_pred ------------CCCeEEEEEcc---CCCEEEEeC-CeEEEEECCC-----Cc---------eeeEeecC-CCCeEEEEE
Q 006808 159 ------------TKGISCMAVSS---DGKMLATAA-GQLKTFNCSD-----HK---------KMQKFSGH-PGAVRFMTF 207 (630)
Q Consensus 159 ------------~~~v~~l~~~p---~~~~l~~~~-g~i~lwd~~~-----~~---------~~~~~~~h-~~~v~~l~~ 207 (630)
...+..++.+| ++++|.... ..-++|.+.+ .. .+..+ |. ......+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 12366677765 666776665 3334443322 11 11222 22 235667889
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+++|..+++-- ..+.|..|+..+.
T Consensus 194 D~~G~ly~~~~-~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 194 DPNGNLYFTDV-EQNAIGCWDPDGP 217 (287)
T ss_dssp ETTTEEEEEEC-CCTEEEEEETTTS
T ss_pred CCCCcEEEecC-CCCeEEEEeCCCC
Confidence 99888776665 6889999998873
No 448
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.29 E-value=0.48 Score=51.41 Aligned_cols=161 Identities=12% Similarity=0.149 Sum_probs=79.9
Q ss_pred CeEEEEEcc--CCeee----EEccCCCCCCEEEEEEec---CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 96 GDVLALAVS--AGQLK----WRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 96 g~v~iwd~~--~~~~~----~~~~~~h~~~v~~~~~s~---~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
|.+.||++. .|+.. .+........+.-+.|.| +.-++..+-.++.+++..+.+... ..|.+|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 567888875 33321 222222334445555554 444555556677777766544322 33555666666555
Q ss_pred EccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-C
Q 006808 167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-H 245 (630)
Q Consensus 167 ~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~ 245 (630)
|-..|-.++. ..||||..|+..+ .||.+++|.+.-.......|..... |
T Consensus 232 ~~~~g~~~l~-----------------------------~lSpDGtv~a~a~-~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 232 FFAEGVLKLA-----------------------------SLSPDGTVFAWAI-SDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred HHhhchhhhe-----------------------------eeCCCCcEEEEee-cCCccceeeeeeeccccHhhhhccCCC
Confidence 5443321111 1678888888877 4888888876533222222322222 2
Q ss_pred Ccee-eeeEEecCCccC---CCCCEEEEEec-CCcEEEEEcCCcccc
Q 006808 246 PAVF-MDCRCIDNGGVD---DAGLYVLAISE-TGVCYIWYGQNIEEL 287 (630)
Q Consensus 246 ~~~~-~~~~~~~~~~~~---~~~~~l~s~s~-dg~i~iwd~~~~~~~ 287 (630)
.... ++..|....-.. +--.++++++. +..+++|.....+++
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 2111 111111110000 11234555554 457999997776665
No 449
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.16 E-value=1.4 Score=28.52 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCEEEEEEecCCC---EEEEEeCCCcEEEEeCCC
Q 006808 118 GGVSAISFATHGS---CIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 118 ~~v~~~~~s~~g~---~l~s~~~dg~v~iwd~~~ 148 (630)
+.|.++.|+|... +|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998544 777777889999999985
No 450
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.11 E-value=16 Score=41.40 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=73.6
Q ss_pred CCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCc-----eeEEeecCC----------CCeEEEEEccCCCEEEEeC-Ce
Q 006808 118 GGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS-----LLGKFRAST----------KGISCMAVSSDGKMLATAA-GQ 180 (630)
Q Consensus 118 ~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~----------~~v~~l~~~p~~~~l~~~~-g~ 180 (630)
.+..+++|+| +...|+.....|...+|++..+. .+....... ..-..+.|.++...|++++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 3678999999 45579999999999999992111 111111111 1234788988888888888 89
Q ss_pred EEEEECCCCceeeEe--ecCCCCeEEEEEeeC--CcEEEEEeeCCCeEEEEEcCCC
Q 006808 181 LKTFNCSDHKKMQKF--SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 181 i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~--~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+.++|+.+......+ ......|..+.-+|. +..|+.+ ...|...++...
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT---s~eiiw~~~~~~ 278 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT---SKEIIWLDVKSS 278 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe---cCeEEEEEccCC
Confidence 999999887653212 223457888888776 3333332 346777787773
No 451
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=89.82 E-value=0.29 Score=55.30 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=6.4
Q ss_pred HHHHHHHHhccccc
Q 006808 530 WIYFILVNHGHHLL 543 (630)
Q Consensus 530 wl~~ll~~h~~~l~ 543 (630)
|+-.|..+--+.|.
T Consensus 586 ~~~vlveiLLslls 599 (784)
T PF04931_consen 586 WSEVLVEILLSLLS 599 (784)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444443
No 452
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.54 E-value=5.7 Score=43.14 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=46.3
Q ss_pred CcEEEEEeCCCeEEEEEccC----CeeeEEcc-C--------------------CCCCCEEEEEEec----CCCEEEEEe
Q 006808 86 SSLLVLGTGGGDVLALAVSA----GQLKWRLS-D--------------------CHPGGVSAISFAT----HGSCIYSAG 136 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~----~~~~~~~~-~--------------------~h~~~v~~~~~s~----~g~~l~s~~ 136 (630)
...++++..+|.+....... +....... . .....+.++++++ +..++++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 66788889999987777654 21111110 0 0123456666666 677899999
Q ss_pred CCCcEEEEeCCCCceeEEeecC
Q 006808 137 ADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 137 ~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
.|+++|+||+.+++++.+....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEETT
T ss_pred CCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999998876644
No 453
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.31 E-value=1.3 Score=28.74 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=25.0
Q ss_pred cccceeEeEECCC-C--CEEEEeeCCCcEEEEECCCC
Q 006808 4 SNIRDILTSFSPA-L--DYFAICSGDARIKIWDTLKG 37 (630)
Q Consensus 4 ~~V~~~~~~fs~d-g--~~las~s~dg~i~vwd~~~~ 37 (630)
+.||.+ .|||+ + ++||..-.-|.|.|+|+.++
T Consensus 1 GAvR~~--kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCC--KFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEE--EeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 457555 99984 4 58888888899999999853
No 454
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.29 E-value=19 Score=39.12 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=88.6
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..| +.+.|.++++.+++.-.+|.|.+||...+.... .++.... ....|+ .|.+...
T Consensus 130 ~kv--v~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~--~~v~ys---------------~fv~~~~--- 187 (670)
T PF10395_consen 130 DKV--VGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSS--INVSYS---------------KFVNDFE--- 187 (670)
T ss_pred cce--EEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccc--cceehh---------------hhhcccc---
Confidence 455 677999999999999999999999993332211 1111000 011111 1111100
Q ss_pred cccCCcEEEEEeC-CCe---EEEEEc--cCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 82 RKLGSSLLVLGTG-GGD---VLALAV--SAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 82 ~~~~~~~l~~~~~-~g~---v~iwd~--~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
-..+..++++.+. .+. .+++.+ ...... .+. ..+........|+.+...|+.= .+++|.+|++...+..+
T Consensus 188 ~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 188 LENGKDLLLTVSQLSNSKLSYKLISLSNESSSIF-ELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQK 265 (670)
T ss_pred cccCCceEEEEEEcCCCcEEEEEEEeccCCcceE-EeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEE
Confidence 0001344444444 332 677877 222221 221 1122233344444433344433 67899999998887776
Q ss_pred EeecC-----C-CCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEee
Q 006808 154 KFRAS-----T-KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS 196 (630)
Q Consensus 154 ~~~~~-----~-~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~ 196 (630)
++.-. . ..+.++.--...+.|++..+.|++.|+.-...+.++.
T Consensus 266 tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 266 TISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 65432 1 2333443222445666666999999987666555553
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.16 E-value=0.077 Score=53.36 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=95.3
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+...|-|.+.-++.++.+..+..||-. |+...... .....-.++|.... ...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-------------------~tg~aldm~wDkeg--------dvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-------------------PTGKALDMAWDKEG--------DVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-------------------CchhHhhhhhcccc--------chh
Confidence 456788888778888888889999854 44443322 12233345665521 445
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
++.+-..+.+.+||+.+.... ++..+-+..-.-+.|++.+..++.+...|.+.+++..+.+.+-..-.|...+.+++|.
T Consensus 90 avlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 667778889999999865432 1111222222237788888888888889999999988877666655588899999999
Q ss_pred cCCCEEEEeC
Q 006808 169 SDGKMLATAA 178 (630)
Q Consensus 169 p~~~~l~~~~ 178 (630)
+.+..+..++
T Consensus 169 lEd~vil~dc 178 (615)
T KOG2247|consen 169 LEDYVILCDC 178 (615)
T ss_pred ccceeeecCc
Confidence 9876555444
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.88 E-value=27 Score=37.98 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=70.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEE-c-cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec---CCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWR-L-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~-~-~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~ 160 (630)
..-|++...+|++++|++........ . .......|..+.|..+|-.+.+. +|.+.+-+-......++++. ..-
T Consensus 94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~ 171 (829)
T KOG2280|consen 94 DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNEL 171 (829)
T ss_pred CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccC
Confidence 45688899999999999864433210 1 11122345555555555434433 44444433111111222221 111
Q ss_pred CeEEEEEccCCC---EEEEeC---C-eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 161 GISCMAVSSDGK---MLATAA---G-QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 161 ~v~~l~~~p~~~---~l~~~~---g-~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+-.|-+..+++. .++-.. + .+..-+....+.. .+....+.+..+..||+.++|+--. ..|.|.+-+....+
T Consensus 172 ~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~-~~~~~~~~~~ki~VS~n~~~laLyt-~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 172 PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLH-ALSWPNSSVVKISVSPNRRFLALYT-ETGKIWVVSIDLSQ 249 (829)
T ss_pred CCcceeEecCCCcceeEEeechhhhhcccceeccccccc-ccCCCCceEEEEEEcCCcceEEEEe-cCCcEEEEecchhh
Confidence 112222222221 111111 0 1111111122211 1222235677889999999988877 58888888877665
Q ss_pred cc
Q 006808 234 KQ 235 (630)
Q Consensus 234 ~~ 235 (630)
..
T Consensus 250 ~l 251 (829)
T KOG2280|consen 250 IL 251 (829)
T ss_pred hh
Confidence 43
No 457
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.78 E-value=2.7 Score=43.08 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=55.4
Q ss_pred eeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc------
Q 006808 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK------ 81 (630)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~------ 81 (630)
..+++.+|++++.|+..+=|+|.++|+.++..++-+++.... .+.|........
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--------------------qc~wi~~~~~~~~~~~~~ 369 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--------------------QCGWIEVPEEGDRDRSNS 369 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--------------------eEEEEEeecccccccccc
Confidence 356799999999998877899999999999988888754322 223322211100
Q ss_pred ------cccCCcEEEEEeCCCeEEEEEccCCeeeEEc
Q 006808 82 ------RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL 112 (630)
Q Consensus 82 ------~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~ 112 (630)
.+...-+++.+-.-|.|.||.+++|..+..+
T Consensus 370 ~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 370 NSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred cccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 0011223445666788999999877665444
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.23 E-value=2.1 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=22.4
Q ss_pred ecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEE
Q 006808 196 SGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALW 227 (630)
Q Consensus 196 ~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vw 227 (630)
......-....|+|||++|+.++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455677889999999998888666 666555
No 459
>PRK13684 Ycf48-like protein; Provisional
Probab=87.67 E-value=33 Score=34.47 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=66.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC----CCCeEEEEEccCCCEEEEeC-CeEEEEECCCCc
Q 006808 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (630)
Q Consensus 116 h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~ 190 (630)
-...++++.+.++++.++++ ..|.+.+=....|........+ ...+..+.+.|++..++++. |.+. .....++
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGK 290 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCC
Confidence 34678999999988866654 5676643233444433322211 23578899999888888777 6554 4445454
Q ss_pred eeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 191 KMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 191 ~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.-.... .-......+.|..+++.++++ ..|.|-.|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG--QRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEEC--CCceEEEec
Confidence 433332 222357788888777776654 478777665
No 460
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.45 E-value=48 Score=36.14 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=83.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEeec-CCC-CeEEEEEccC------CCEEEEeC------Ce
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRA-STK-GISCMAVSSD------GKMLATAA------GQ 180 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~~-~~~-~v~~l~~~p~------~~~l~~~~------g~ 180 (630)
...|.++.|.++++.+++.-.+|.|.+||...+. .+..+.. +.. -+++ +|-++ ..++++.+ -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 4679999999999999999999999999983221 1112221 111 1122 23221 23333322 25
Q ss_pred EEEEECC-CCceeeEee---cCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccceeee-eecCC-ceeeeeE
Q 006808 181 LKTFNCS-DHKKMQKFS---GHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVL-AMEHP-AVFMDCR 253 (630)
Q Consensus 181 i~lwd~~-~~~~~~~~~---~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~-~~~~~~~ 253 (630)
.+++.+. ....+..+. .+........|.. +|..... .++.|.+|++..-+......+. .+... ...+...
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l---~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL---SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE---eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 6777771 122222332 1222223333332 4543332 3779999999877544111111 11111 1233333
Q ss_pred EecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
. |...+++-+ .++.|++.|+.-...+.++.
T Consensus 285 ~-------~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 P-------PSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred c-------CCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 2 444555544 34689999976555554443
No 461
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.40 E-value=3.5 Score=38.43 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEc------cC-------CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~------~~-------~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+.++++.+.+|.+++||+.+++.+... .. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 778999999999999999998765332 11 2345567777776666555543 4566677643
No 462
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.17 E-value=41 Score=38.21 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=92.3
Q ss_pred EEEEEccCCeeeEEccCCCC---CCEEEEEEecCCCE-EEEEe------------CCCcEEEEeCC-CCceeEEeecCCC
Q 006808 98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSC-IYSAG------------ADGMVCEIDPL-TGSLLGKFRASTK 160 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~~~h~---~~v~~~~~s~~g~~-l~s~~------------~dg~v~iwd~~-~~~~~~~~~~~~~ 160 (630)
|+++|..+++.+..+..+.. -.|.++.|+..... +..++ .+|.++.|++- .|+.+.-+....-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 78888888876554432222 24667777654333 33322 12335555532 3332222221111
Q ss_pred CeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEee--cCCCCeEEEEEeeCCcEEEEEeeCCCe-EEEEEcCCCcccc
Q 006808 161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~~~~~~d~~-i~vwd~~~~~~~~ 236 (630)
+-.-.+..|-+.++++|- ..+++|++.+.+.++... .-...|+.+.+. +..++++...++. ...|+-...+..
T Consensus 935 ~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~- 1011 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLI- 1011 (1205)
T ss_pred CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEE-
Confidence 222345567555665555 799999998877766543 224567777765 5677777765552 334444443322
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
++.-..-...++...+ -|-..++.+..=|.+.+-.+
T Consensus 1012 ---~fadD~~pR~Vt~~~~------lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1012 ---VFADDPVPRHVTALEL------LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred ---EEeCCCccceeeEEEE------ecCCceeeccccCcEEEEEC
Confidence 2222222333444444 35567888888788777654
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=52 Score=38.38 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.5
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECC
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTL 35 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~ 35 (630)
-.++|+|.-.++|.|...|.|++|-..
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred cceeeccccceEEEEEecccEEEeccc
Confidence 345999999999999999999999654
No 464
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.38 E-value=33 Score=33.23 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=99.2
Q ss_pred CcEEEEEeCCCeEEEEEcc------CC-eeeEEccC--C--CCCCEEEEEEecCCC------------EEEEEeCCCcEE
Q 006808 86 SSLLVLGTGGGDVLALAVS------AG-QLKWRLSD--C--HPGGVSAISFATHGS------------CIYSAGADGMVC 142 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~------~~-~~~~~~~~--~--h~~~v~~~~~s~~g~------------~l~s~~~dg~v~ 142 (630)
+.+-++....+...+||.. .. ..+..+.. + ..+..+.+.|+.... .|+.+++||+|.
T Consensus 34 ~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTis 113 (336)
T TIGR03118 34 GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLS 113 (336)
T ss_pred CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEE
Confidence 4445666666778899886 11 22333321 1 234678888875332 367788999999
Q ss_pred EEeCCCCce-----eEEeecC-CC-CeEEEEEcc--CCCEEEEeC---CeEEEEECCCCcee--eEeecCC-----C--C
Q 006808 143 EIDPLTGSL-----LGKFRAS-TK-GISCMAVSS--DGKMLATAA---GQLKTFNCSDHKKM--QKFSGHP-----G--A 201 (630)
Q Consensus 143 iwd~~~~~~-----~~~~~~~-~~-~v~~l~~~p--~~~~l~~~~---g~i~lwd~~~~~~~--~~~~~h~-----~--~ 201 (630)
-|...-+.. ...+... .. -...+++.+ .+.+|..+. ++|.+||-.=.+.. ..|.... . .
T Consensus 114 aW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFn 193 (336)
T TIGR03118 114 GWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFN 193 (336)
T ss_pred eecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcc
Confidence 998532211 1222211 22 234455553 467888877 89999985322211 1111110 0 0
Q ss_pred eEE------EEE---eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC-----ceeeee--EEecCCccCCCCC
Q 006808 202 VRF------MTF---SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-----AVFMDC--RCIDNGGVDDAGL 265 (630)
Q Consensus 202 v~~------l~~---sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~ 265 (630)
|.. +.| .++.+.=+.+. .-|.|.+||+...-.. .+.+. .+-+.. ..|. ...|.
T Consensus 194 Iqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~G~l~~------r~as~g~LNaPWG~a~APa~FG----~~sg~ 262 (336)
T TIGR03118 194 VQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLNGQLLR------RVASSGRLNAPWGLAIAPESFG----SLSGA 262 (336)
T ss_pred eEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCCCcEEE------EeccCCcccCCceeeeChhhhC----CCCCC
Confidence 111 111 12222212222 3568999988764322 22211 111111 1111 13466
Q ss_pred EEEEEecCCcEEEEEcCCccccccc
Q 006808 266 YVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 266 ~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
+|+---.||+|..||..+++.+...
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeee
Confidence 6665566999999999888765443
No 465
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.79 E-value=12 Score=40.43 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=93.7
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE----eecCCCCeEEEEEccCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRASTKGISCMAVSSDG 171 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~~~v~~l~~~p~~ 171 (630)
-.|+||+.. |..+.++.-.| +.+..+.|+.+. .|++...+|++.+|++- |..+.. +......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~-~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKH-GELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcC-CCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 347777765 44443443234 388999999765 56777799999999975 332222 12223345666666678
Q ss_pred CEEEEeCCeEEEEECCCCceeeEeec---CCCCeEEEEEeeCCc--E-EEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 172 KMLATAAGQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGK--Y-VLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 172 ~~l~~~~g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~--~-l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
-.+.+.+|.+.+-+-.....+.+++. ..-+-+|-...+++. . ++-..-..+ ..++........ ...+..
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q----~~~~~~ 214 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQ----LHALSW 214 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccc----ccccCC
Confidence 77777777666554333223333332 111212222222221 1 111110000 122222222211 112222
Q ss_pred C-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 246 P-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
+ ..+.. +..+ |+.++|+--+..|.|.+-+.+..+.+..+.
T Consensus 215 ~~~~~~k-i~VS-----~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVK-ISVS-----PNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCceEEE-EEEc-----CCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 2 22332 2233 889999999999999998887776665543
No 466
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.42 E-value=40 Score=37.17 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=65.8
Q ss_pred EEEEEEec--CCCEEEEEeCCCcEEEEeCCC-------C-------------ceeEEeecCCCCeEEEEEc--cCCCEEE
Q 006808 120 VSAISFAT--HGSCIYSAGADGMVCEIDPLT-------G-------------SLLGKFRASTKGISCMAVS--SDGKMLA 175 (630)
Q Consensus 120 v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~~--p~~~~l~ 175 (630)
|+-|.... +...|+.|..||.|.+|.+.+ . ++...+. ....+.+++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55555443 344688899999999996521 1 0111222 23478899998 7888888
Q ss_pred EeC--CeEEEE--ECCCCcee-eEeecCCCCeEEEEEeeCC-----c-EEEEEeeCCCeEEEEEc
Q 006808 176 TAA--GQLKTF--NCSDHKKM-QKFSGHPGAVRFMTFSDNG-----K-YVLSSAVGERYIALWRT 229 (630)
Q Consensus 176 ~~~--g~i~lw--d~~~~~~~-~~~~~h~~~v~~l~~sp~~-----~-~l~~~~~~d~~i~vwd~ 229 (630)
+++ ..|.|| .+...+.. ..-..|...|.+|+|-++. . .+++++ -.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d-I~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD-ISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe-ccCcEEEEEE
Confidence 888 445554 44322211 1111255678899997643 2 454454 5898888887
No 467
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.31 E-value=13 Score=42.86 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=78.5
Q ss_pred eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEc
Q 006808 24 SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAV 103 (630)
Q Consensus 24 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~ 103 (630)
+.|+.+.+|+..++.....+.+....+..+..-.+ ..|.....+ ..+|++++ --.|.++-+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP-kpgvFv~~I-----------------qhlLvvaT-~~ei~ilgV 156 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP-KPGVFVPEI-----------------QHLLVVAT-PVEIVILGV 156 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecC-CCCcchhhh-----------------heeEEecc-cceEEEEEE
Confidence 35789999999998777777765555443322111 011111111 22333333 334444433
Q ss_pred cCCee--eEEccC------CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC--C---c-e----------------eE
Q 006808 104 SAGQL--KWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--G---S-L----------------LG 153 (630)
Q Consensus 104 ~~~~~--~~~~~~------~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~--~---~-~----------------~~ 153 (630)
.-.+. ....+. -....|+|+....+|+.|++| .||.++-.-... + + | +-
T Consensus 157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred EeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 21111 001111 123568899977788766665 666444332221 1 1 1 11
Q ss_pred Eee-cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC
Q 006808 154 KFR-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (630)
Q Consensus 154 ~~~-~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~ 188 (630)
.+. .+..+|..+++...-..+.+-+ |+|.+|++..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 122 3456899999988777777766 8999999976
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.21 E-value=74 Score=36.18 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=75.4
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC----eeeEEccCCCCC----------CEEEEEEecCCC
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPG----------GVSAISFATHGS 130 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~----~~~~~~~~~h~~----------~v~~~~~s~~g~ 130 (630)
+.....++|+|.+ ...||+....|.-.||++..+ .........+.+ .-..+.|.++-+
T Consensus 145 g~~~aDv~FnP~~--------~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~ 216 (765)
T PF10214_consen 145 GFPHADVAFNPWD--------QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN 216 (765)
T ss_pred CCccceEEeccCc--------cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC
Confidence 3456677777776 557999999999999999211 111122112222 234788888877
Q ss_pred EEEEEeCCCcEEEEeCCCCceeE-Ee-ecCCCCeEEEEEccC--CCEEEEeCCeEEEEECCC
Q 006808 131 CIYSAGADGMVCEIDPLTGSLLG-KF-RASTKGISCMAVSSD--GKMLATAAGQLKTFNCSD 188 (630)
Q Consensus 131 ~l~s~~~dg~v~iwd~~~~~~~~-~~-~~~~~~v~~l~~~p~--~~~l~~~~g~i~lwd~~~ 188 (630)
.|+.++. ..+.++|+.+..... .. ......|..+.-+|. +..++..+..|...++..
T Consensus 217 ~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 217 RLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8888765 458899998775533 22 223347888888886 455555668888888876
No 469
>PLN02193 nitrile-specifier protein
Probab=84.94 E-value=57 Score=34.62 Aligned_cols=144 Identities=12% Similarity=0.063 Sum_probs=66.1
Q ss_pred CcEEEEEeCC-------CeEEEEEccCCeeeEEccCC-CCC--CEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCc
Q 006808 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDC-HPG--GVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS 150 (630)
Q Consensus 86 ~~~l~~~~~~-------g~v~iwd~~~~~~~~~~~~~-h~~--~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~ 150 (630)
+.+++.|+.+ ..+.+||+.+..-......+ ... ........-++..++.|+.+ ..+..+|+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4455555542 23778888876543211111 001 11111112245555666654 357888887653
Q ss_pred eeEEeecC----CC-CeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeEeec----CCCCeEEEEEeeCCcEE
Q 006808 151 LLGKFRAS----TK-GISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 151 ~~~~~~~~----~~-~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l 214 (630)
-. .+... .. .-.+++. -++++++.|+ ..+..||+.+.+-. .+.. ...........-+++.+
T Consensus 256 W~-~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 256 WK-LLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLEVVQGKVW 332 (470)
T ss_pred EE-EcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEEEECCcEE
Confidence 22 11111 11 1122222 3456666665 25778888765421 1110 00011111112356666
Q ss_pred EEEeeCC----CeEEEEEcCCCc
Q 006808 215 LSSAVGE----RYIALWRTDGVK 233 (630)
Q Consensus 215 ~~~~~~d----~~i~vwd~~~~~ 233 (630)
+.++. + ..+.+||+.+.+
T Consensus 333 viGG~-~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 333 VVYGF-NGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEECC-CCCccCceEEEECCCCE
Confidence 66652 3 458889988765
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.89 E-value=50 Score=33.97 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=66.9
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-----eEEeec--CCCCeEEEEEccCCCEEEEeC-CeEEEEECC
Q 006808 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRA--STKGISCMAVSSDGKMLATAA-GQLKTFNCS 187 (630)
Q Consensus 116 h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~--~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~ 187 (630)
....++++.|.++|..++++ ..|.+ +|....++. ...... ....+..+.|.+++..+++|. |.+... ..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TD 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CC
Confidence 34578999999998876655 55654 344444432 222221 123588999999999998888 666554 34
Q ss_pred CCceeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 188 DHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 188 ~~~~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
.|+.-.... .-......+.|.++++.++++ .+|.|--|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence 454433322 224567899998877766664 47776544
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.87 E-value=57 Score=33.74 Aligned_cols=141 Identities=8% Similarity=0.060 Sum_probs=78.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeee---EEccCCCCCCEEEEEEec-----CCCEEEEEeCCCcEEEEeCCC--Cc-----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLT--GS----- 150 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~---~~~~~~h~~~v~~~~~s~-----~g~~l~s~~~dg~v~iwd~~~--~~----- 150 (630)
...|++|+..|.++||++..+... .-+...-..+|..+..-+ +...|+. =.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 578999999999999999655421 011112346777776532 1122333 3445667776521 11
Q ss_pred --eeEEeecCC--CCeEEEEEcc----C-CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 151 --LLGKFRAST--KGISCMAVSS----D-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 151 --~~~~~~~~~--~~v~~l~~~p----~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
.+..+..|. .....+++-| . ..++.+-+ |.+.+|+-+.....+.+++ ---...+.|.|....|+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 111112221 2334444444 2 24555555 9999999765543344443 222234678887778888774
Q ss_pred CCCeEEEEEc
Q 006808 220 GERYIALWRT 229 (630)
Q Consensus 220 ~d~~i~vwd~ 229 (630)
+..+..|..
T Consensus 195 -s~~l~~Yky 203 (418)
T PF14727_consen 195 -SWTLECYKY 203 (418)
T ss_pred -ceeEEEecH
Confidence 777877764
No 472
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.86 E-value=26 Score=33.95 Aligned_cols=94 Identities=11% Similarity=0.153 Sum_probs=57.5
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe------CCCcEEEEeCCCCceeEEeecC-----CCCeEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAS-----TKGISC 164 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~ 164 (630)
..|++||+.+.+.. .+-.+-.+.|+++.|..+.+.++.|. ....+..||+.+.. ...+... .++|..
T Consensus 16 ~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEee-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 44999999887764 34344667899999986666666653 35578889987553 3333331 357877
Q ss_pred EEEcc-CCCEEE-EeC-----CeEEEEECCCCce
Q 006808 165 MAVSS-DGKMLA-TAA-----GQLKTFNCSDHKK 191 (630)
Q Consensus 165 l~~~p-~~~~l~-~~~-----g~i~lwd~~~~~~ 191 (630)
+.+.. ++..+. .|. ..|..||-.+...
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~ 127 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSS 127 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEe
Confidence 77743 443333 332 2456665544443
No 473
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.52 E-value=35 Score=31.05 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEE--EeC-CeEEEEECCCCceeeEeecCCCCe
Q 006808 128 HGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA--TAA-GQLKTFNCSDHKKMQKFSGHPGAV 202 (630)
Q Consensus 128 ~g~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~--~~~-g~i~lwd~~~~~~~~~~~~h~~~v 202 (630)
+|.++.+.+. ...|+.||+.+|+.+..-+-....+..=-...-|..+. +=. |....+|..+.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4555666654 34799999999988765443211111111111123322 222 677888988888777765 23333
Q ss_pred EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..++ .|+..|+.+. ...+++.-|..+-.
T Consensus 134 WgLt--~d~~~Limsd-GsatL~frdP~tfa 161 (262)
T COG3823 134 WGLT--SDDKNLIMSD-GSATLQFRDPKTFA 161 (262)
T ss_pred eeee--cCCcceEeeC-CceEEEecCHHHhh
Confidence 4443 4555566654 35567766665543
No 474
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.52 E-value=56 Score=33.44 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=70.6
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..|+| .++.||+|.+.+|.--.+++|-+++....+....+.. .+......+.-+.|..
T Consensus 65 d~G~I--~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~--------------~ck~k~~~IlGF~W~~------ 122 (657)
T KOG2377|consen 65 DKGEI--KSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ--------------ECKTKNANILGFCWTS------ 122 (657)
T ss_pred CCCce--eEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH--------------HhccCcceeEEEEEec------
Confidence 35789 5559999999999999999999998743322211110 0011122355566755
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTG 149 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~ 149 (630)
.+-++..+..| +-+|.+...+...+....|...|.-..|.++.+.++-++ ...++.=+-++++
T Consensus 123 ----s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 123 ----STEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ----CeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 33456666555 444444333332245567888999999999887744333 3334433444433
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.02 E-value=6.6 Score=24.99 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=28.0
Q ss_pred cCCCEEEEEe-CCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 127 THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 127 ~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
|++++++++. .++.|.++|..+++.+..+..... ...++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 5677766655 578999999999888888776333 344444
No 476
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.86 E-value=5.3 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=22.9
Q ss_pred cCCCEEEEeC---CeEEEEECCCCceeeEeec
Q 006808 169 SDGKMLATAA---GQLKTFNCSDHKKMQKFSG 197 (630)
Q Consensus 169 p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~ 197 (630)
|++++|+++. ++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777777765 7999999998888777764
No 477
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.47 E-value=63 Score=33.26 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=56.8
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCcee-EEe-ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCce-----e
Q 006808 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK-----M 192 (630)
Q Consensus 121 ~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~-~~~-~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~-----~ 192 (630)
..+..+++|.+++.+..-..++-|| .|+.. ... ......++.+.+.+++.+++++. |.+. +....++. .
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccce
Confidence 3445567776655554333333344 23221 211 22344788999999999988887 5543 44444431 2
Q ss_pred eEeec--CCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 193 QKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 193 ~~~~~--h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
..... ....+..+.|.+++..++++ ..|.+...
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s 353 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRS 353 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEe
Confidence 22221 12358889999888766654 36765554
No 478
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.15 E-value=6.6 Score=39.69 Aligned_cols=145 Identities=20% Similarity=0.323 Sum_probs=78.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeE-EccCCCCC----CEE-EEEEecCCCEEEEEeCCCcEEEE-eCCCC-c----eeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHPG----GVS-AISFATHGSCIYSAGADGMVCEI-DPLTG-S----LLG 153 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~-~~~~~h~~----~v~-~~~~s~~g~~l~s~~~dg~v~iw-d~~~~-~----~~~ 153 (630)
++.+++-+. ..+.++++.+..... ++.....+ .|+ .+..-..|..+..++.||.|.-| |.+.+ + .++
T Consensus 232 g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R 310 (733)
T COG4590 232 GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIR 310 (733)
T ss_pred CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeee
Confidence 666776665 668888876554321 11111111 122 12222345668889999999888 54432 2 222
Q ss_pred EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.++-...++..+.-..+.+-+++-+ |++.++.....+.+- +..--..+..+++||.+.++++- +.+.|+++.+.+
T Consensus 311 ~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e--~~gki~~~~l~N 387 (733)
T COG4590 311 NFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE--DQGKIRLAQLEN 387 (733)
T ss_pred ccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee--cCCceEEEEecC
Confidence 3332223333332222223344433 677666544433322 11122356678999999999874 467899999887
Q ss_pred Ccc
Q 006808 232 VKK 234 (630)
Q Consensus 232 ~~~ 234 (630)
..+
T Consensus 388 r~P 390 (733)
T COG4590 388 RNP 390 (733)
T ss_pred CCC
Confidence 654
No 479
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.56 E-value=0.22 Score=50.19 Aligned_cols=132 Identities=13% Similarity=0.162 Sum_probs=87.7
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeEEeec-CCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRA-STKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~ 166 (630)
++.++.+..|..||-...... .. .-++...+++|..+|..+ +.+-..+.+.+||+.+... +++.. ....-.-+.
T Consensus 49 lavaca~tiv~~YD~agq~~l-e~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~ 124 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKAGQVIL-EL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLA 124 (615)
T ss_pred eehhhhhhHHHhhhhhcceec-cc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHh
Confidence 788888888888886543332 22 234567788888877764 4556788999999875422 11111 111112268
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
|++.+..++.+. |.+.+++..+.+.+-..-.|...++++++.+.+..+. ++ .|..+.+
T Consensus 125 wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil-~d-cd~~L~v 184 (615)
T KOG2247|consen 125 WSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL-CD-CDNTLSV 184 (615)
T ss_pred hccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee-cC-cHHHHHH
Confidence 899888888887 8999999887765544444889999999999875543 33 3554443
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.72 E-value=30 Score=35.22 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=89.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEE-ecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++|..+ -..|||++|..-+. ..+.|+++.+...... +-... . +.....++.-...
T Consensus 221 ~~v~ql--lL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds--p-----------g~~~~~Vte~l~l-------- 276 (733)
T COG4590 221 SDVSQL--LLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDS--P-----------GDSRHQVTEQLYL-------- 276 (733)
T ss_pred cchHhh--EECCCCCEEEEecC-CeEEEEeecccccchhhhhhcC--C-----------CchHHHHHHHHHH--------
Confidence 345444 68899998876665 6889998876543221 11000 0 1000000000000
Q ss_pred ccCCcEEEEEeCCCeEEEE-EccCCeeeEEc-----cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 83 KLGSSLLVLGTGGGDVLAL-AVSAGQLKWRL-----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iw-d~~~~~~~~~~-----~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
..++..++++..||-|.-| |+..+... .+ .+-....+..+.-..+.+-|++-+..|++..+.....+.+- +.
T Consensus 277 L~Gg~SLLv~~~dG~vsQWFdvr~~~~p-~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~ 354 (733)
T COG4590 277 LSGGFSLLVVHEDGLVSQWFDVRRDGQP-HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FE 354 (733)
T ss_pred HhCceeEEEEcCCCceeeeeeeecCCCC-cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hh
Confidence 0135668888999987655 65543321 11 11111223333222233457777888888887654443322 22
Q ss_pred cCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCcee
Q 006808 157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM 192 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~ 192 (630)
..-..+..++++|.+.++++-. |.|+++.+++..+-
T Consensus 355 ~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 355 RAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred hhhcCcceeeeCcccchheeecCCceEEEEecCCCCC
Confidence 2223567789999999999887 89999988776543
No 481
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=80.72 E-value=1.2e+02 Score=35.31 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=74.8
Q ss_pred CcEEEEEeC---------CCeEEEEEccC-----Ce------eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 86 SSLLVLGTG---------GGDVLALAVSA-----GQ------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 86 ~~~l~~~~~---------~g~v~iwd~~~-----~~------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
..+|++|+. .|.+.|||+-. |+ ...-+.....++|..++=- +| +|+++ ....|.+|+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSS-QGQKIIVRK 1122 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc-EEEEc-cCcEEEEEE
Confidence 567888875 47799998732 21 1112223455677766533 45 45555 345799999
Q ss_pred CC-CCceeEE-eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEee--cCCCCeEEEEEeeCCc--EEEE
Q 006808 146 PL-TGSLLGK-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFS--GHPGAVRFMTFSDNGK--YVLS 216 (630)
Q Consensus 146 ~~-~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~--~h~~~v~~l~~sp~~~--~l~~ 216 (630)
+. ....+.. |- .-+++-....--.++|+.|. ..|.+.-..... .+..+. ...-.+.++.|--+|. ++++
T Consensus 1123 l~r~~~ligVaFi--D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFI--DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred eccCCcceeeEEe--ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 84 3333322 21 11222222223345666666 455544333221 122221 1223578888877765 4555
Q ss_pred EeeCCCeEEEEEcCCC
Q 006808 217 SAVGERYIALWRTDGV 232 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~ 232 (630)
+. .+|+|++|-....
T Consensus 1201 sD-a~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1201 SD-ADRNIHVYMYAPE 1215 (1366)
T ss_pred Ec-CCCcEEEEEeCCC
Confidence 54 6889988865443
No 482
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.35 E-value=3.9 Score=25.75 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=18.0
Q ss_pred ceeEeEECCCCCEEEEeeC-C--CcEEEE
Q 006808 7 RDILTSFSPALDYFAICSG-D--ARIKIW 32 (630)
Q Consensus 7 ~~~~~~fs~dg~~las~s~-d--g~i~vw 32 (630)
.....+|||||++|+.++. + |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3466799999999987765 4 555555
No 483
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=79.90 E-value=44 Score=33.48 Aligned_cols=99 Identities=18% Similarity=0.302 Sum_probs=55.8
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce---eEEe----ecCCCCeEEEEEccC----CCEEEEeC---------
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKF----RASTKGISCMAVSSD----GKMLATAA--------- 178 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~---~~~~----~~~~~~v~~l~~~p~----~~~l~~~~--------- 178 (630)
..++|+|.|+|+.|++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4688999999877665 5699999999 44443 2222 123457899999994 33333322
Q ss_pred -CeEEEEECCCC-------c-eeeEeec---CCCCeEEEEEeeCCcEEEEEee
Q 006808 179 -GQLKTFNCSDH-------K-KMQKFSG---HPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 179 -g~i~lwd~~~~-------~-~~~~~~~---h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
..|.-|....+ + .+..+.. .......|.|.|+|...++.|.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13444444333 1 1122232 2334567999999977777663
No 484
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.81 E-value=12 Score=41.86 Aligned_cols=43 Identities=7% Similarity=-0.018 Sum_probs=30.4
Q ss_pred HHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 006808 493 KMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFIL 535 (630)
Q Consensus 493 ~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll 535 (630)
.|-..++.+..+++..+++.+..++++.+..++.-+..++.++
T Consensus 754 ~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvi 796 (1010)
T KOG1991|consen 754 VIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVI 796 (1010)
T ss_pred HHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 4556678888899999999999998875555554444444444
No 485
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.75 E-value=36 Score=28.63 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=71.8
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
-.|.....-|++++.-|+|.|++.........- ....+ ...+....+++++--+..+.. ....|+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--~~~~i---------~~LNin~~italaaG~l~~~~----~~D~Ll 68 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--QDSDI---------SFLNINQEITALAAGRLKPDD----GRDCLL 68 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc--ccCce---------eEEECCCceEEEEEEecCCCC----CcCEEE
Confidence 368777888999988999999987643321110 00011 112234456666655443211 145666
Q ss_pred EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC---CCEEEEEeCCCcEEEEeCCCCcee
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~v~iwd~~~~~~~ 152 (630)
+|+. ..+..||+..+.-+ +.+.-...|.++.+-.- ..-++..+.+..|.-||..-.+..
T Consensus 69 iGt~-t~llaYDV~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 69 IGTQ-TSLLAYDVENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Eecc-ceEEEEEcccCchh--hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 6654 56899999887653 33344567888877431 123555556677888886544433
No 486
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=79.59 E-value=14 Score=41.25 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=28.1
Q ss_pred ccChhhHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHhcccccC
Q 006808 500 SLSPTNACKLLEVLVDLWQSRS--YKGKNILQWIYFILVNHGHHLLS 544 (630)
Q Consensus 500 ~l~~~~~~~lL~~l~~~~~~~~--~~~~~~~~wl~~ll~~h~~~l~~ 544 (630)
..+...-..+.+.+.+.+..++ ...+.+...+..|++.-|..+.+
T Consensus 204 ~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~ 250 (1233)
T KOG1824|consen 204 SCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS 250 (1233)
T ss_pred hcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc
Confidence 3444444566666666655333 34666777788888887777754
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=78.44 E-value=75 Score=31.64 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=50.3
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCce---eEEeecCCCCe--EEEEEccCCCEEEEeC-------CeEEEEECCCCc
Q 006808 128 HGSCIYSAGAD-----GMVCEIDPLTGSL---LGKFRASTKGI--SCMAVSSDGKMLATAA-------GQLKTFNCSDHK 190 (630)
Q Consensus 128 ~g~~l~s~~~d-----g~v~iwd~~~~~~---~~~~~~~~~~v--~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~ 190 (630)
++..++.|+.+ ..+..+|+.+.+- ...+..-..+. .+++. -++++.+.|+ ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566667654 3566777766542 12221111111 12222 2466666665 368889987654
Q ss_pred e--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCC----eEEEEEcCCCc
Q 006808 191 K--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVK 233 (630)
Q Consensus 191 ~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~----~i~vwd~~~~~ 233 (630)
- +..+... ......+...+++..+.+| .++ .+.+||+.+.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcC-CCCccccceEEEecCCCe
Confidence 2 2222211 1122222334566666666 342 24678877654
No 488
>PLN02153 epithiospecifier protein
Probab=78.35 E-value=79 Score=31.81 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=31.5
Q ss_pred CcEEEEEeCC-------CeEEEEEccCCeeeEEccCCC--CC---CEEEEEEecCCCEEEEEeCC-----CcEEEEeCCC
Q 006808 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCH--PG---GVSAISFATHGSCIYSAGAD-----GMVCEIDPLT 148 (630)
Q Consensus 86 ~~~l~~~~~~-------g~v~iwd~~~~~~~~~~~~~h--~~---~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~ 148 (630)
+.++++|+.+ ..+.+||+.+.+-......+. .. ....+.+ +++.++.|+.+ ..+.+||+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 4455555542 248889988775432111111 00 1222222 45566666643 2577888876
Q ss_pred C
Q 006808 149 G 149 (630)
Q Consensus 149 ~ 149 (630)
.
T Consensus 111 ~ 111 (341)
T PLN02153 111 N 111 (341)
T ss_pred C
Confidence 4
No 489
>PHA02608 67 prohead core protein; Provisional
Probab=76.50 E-value=1.7 Score=31.64 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=9.4
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 006808 547 SLTPMLSSLYKITVSREAA 565 (630)
Q Consensus 547 ~l~~~l~~L~~~~~~~~~~ 565 (630)
+|...=..+.+.++.|...
T Consensus 12 DLV~akK~F~~~Me~rt~~ 30 (80)
T PHA02608 12 DLVEAKKEFASIMEARTEA 30 (80)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555553
No 490
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=74.59 E-value=23 Score=31.60 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCeEEEEEeeCC-----cEEEEEeeCCCeEEEEEcCC
Q 006808 200 GAVRFMTFSDNG-----KYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 200 ~~v~~l~~sp~~-----~~l~~~~~~d~~i~vwd~~~ 231 (630)
..+.+++|||.| +.+++.-..++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 34444444689999998664
No 491
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.28 E-value=24 Score=40.90 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=55.5
Q ss_pred CCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEE--------eeCCcEEEEEeeCCCeEEEEEcCCCcccc----c
Q 006808 170 DGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTF--------SDNGKYVLSSAVGERYIALWRTDGVKKQS----A 237 (630)
Q Consensus 170 ~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~--------sp~~~~l~~~~~~d~~i~vwd~~~~~~~~----~ 237 (630)
=++..++.++.+.+|+..++.....+.+-...|..|.. .|.=+++++.+ .--.|.++-+...+... .
T Consensus 90 I~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 90 IGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred hcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCccccc
Confidence 35666677789999999987766667666666666543 33334555554 34556666554332211 1
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcE
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i 276 (630)
...+.+...+..+.++... .+|+.+++ |.||.|
T Consensus 169 ~~~~~i~~dg~~V~~I~~t-----~nGRIF~~-G~dg~l 201 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYT-----ENGRIFFA-GRDGNL 201 (1311)
T ss_pred ccceeeecCCceEEEEEec-----cCCcEEEe-ecCCCE
Confidence 1123334444455555543 56665554 555643
No 492
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=73.81 E-value=93 Score=30.42 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=73.5
Q ss_pred cEEEEeCCCCceeEEeecC------CCCeEEEEEccCC-----CEEEEeC---CeEEEEECCCCceeeEeecC-------
Q 006808 140 MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDG-----KMLATAA---GQLKTFNCSDHKKMQKFSGH------- 198 (630)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~~-----~~l~~~~---g~i~lwd~~~~~~~~~~~~h------- 198 (630)
.+.+||+.+++.++++.-. ...+..+.+.... .++..+. +-|.++|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778899988887776532 3466777776622 3444444 68999999998765544322
Q ss_pred ------------CCCeEEEEEee---CCcEEEEEeeCCCeEEEEEcCCCcccc-----c----eeeeeecCCceeeeeEE
Q 006808 199 ------------PGAVRFMTFSD---NGKYVLSSAVGERYIALWRTDGVKKQS-----A----SCVLAMEHPAVFMDCRC 254 (630)
Q Consensus 199 ------------~~~v~~l~~sp---~~~~l~~~~~~d~~i~vwd~~~~~~~~-----~----~~~~~~~~~~~~~~~~~ 254 (630)
...+..++.+| +++.|+...... -++|.+.+.-... . .....++..........
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss--~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS--RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC--CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 12255566655 556666655322 2344443321110 0 01112222112233344
Q ss_pred ecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 255 IDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 255 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.. ++|...++--..+.|..|+...
T Consensus 193 ~D-----~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 193 ID-----PNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EE-----TTTEEEEEECCCTEEEEEETTT
T ss_pred EC-----CCCcEEEecCCCCeEEEEeCCC
Confidence 44 6777777777788888888653
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=73.38 E-value=24 Score=31.42 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=22.4
Q ss_pred CeEEEEEccCCCEEEEeCCeEEEEECCCC
Q 006808 161 GISCMAVSSDGKMLATAAGQLKTFNCSDH 189 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~g~i~lwd~~~~ 189 (630)
...+++|+.||.+.++++..|+|.+..+.
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P 34 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTP 34 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCC
Confidence 34689999999777777789999955443
No 494
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=73.31 E-value=1e+02 Score=30.75 Aligned_cols=144 Identities=13% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCEEEEEEecCCCEEEEEeCCCc------EEEEeCCC----------CceeEEeecCCCCeE-------EEEEccCCCEE
Q 006808 118 GGVSAISFATHGSCIYSAGADGM------VCEIDPLT----------GSLLGKFRASTKGIS-------CMAVSSDGKML 174 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~dg~------v~iwd~~~----------~~~~~~~~~~~~~v~-------~l~~~p~~~~l 174 (630)
+.+.++.+.+++..+++.+.+|. +..+++.. ...+........++. +|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Q ss_pred EEeC-C-------eEEEEECCCCceeeEe---------------ecCCCCeEEEEEeeCCcEEEEEeeCC----------
Q 006808 175 ATAA-G-------QLKTFNCSDHKKMQKF---------------SGHPGAVRFMTFSDNGKYVLSSAVGE---------- 221 (630)
Q Consensus 175 ~~~~-g-------~i~lwd~~~~~~~~~~---------------~~h~~~v~~l~~sp~~~~l~~~~~~d---------- 221 (630)
++.- + .|+.++.. |+.+..+ .......-+++++|+|+.|+++...-
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Q ss_pred -----CeEEEEEcCCCccccceeeeeec------CCceeeeeEEecCCccCCCCCEEE
Q 006808 222 -----RYIALWRTDGVKKQSASCVLAME------HPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 222 -----~~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
-.|..||..+.........+.+. ....+..+.+. +++++++
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al------~d~~lLv 230 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL------PDGRLLV 230 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE------CCCcEEE
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=72.93 E-value=80 Score=32.90 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEeeCCCcEEEEEC-------CCCcEEEEe-cccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE
Q 006808 21 AICSGDARIKIWDT-------LKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 21 as~s~dg~i~vwd~-------~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (630)
|-...|.++.||+. .++.....+ .+....+ ..++++.
T Consensus 40 Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i-----------------------------------~~v~lv~ 84 (422)
T PF08801_consen 40 AWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSI-----------------------------------PGVGLVK 84 (422)
T ss_dssp EEEEETTEEEEEE--SS--GG--EEEEE----------------------------------------------SEEEEE
T ss_pred EEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCC-----------------------------------ceEEEEE
Q ss_pred eCCCeEEEE-EccCCeeeEEccC----------CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 93 TGGGDVLAL-AVSAGQLKWRLSD----------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 93 ~~~g~v~iw-d~~~~~~~~~~~~----------~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
...|.|..| ++...-.+..... -..+......-.-....++.+..+|.|...-.+....+..+......
T Consensus 85 p~~G~v~f~~~I~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~ 164 (422)
T PF08801_consen 85 PKTGRVVFWESISHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSGFIVSTSTGRIFFLGIRDSNGKYELSYQQLS 164 (422)
T ss_dssp -TT-EEEEES-TT-TT--EEEE------------------EEEEEEETTTEEEEETT--EEEEEE-TTS-EEEEE-TT--
T ss_pred cCCCCEEecccchhhhhcCccccccccccceeeecCCceEEECCCCceEEEEEECCCCeEEEEeCCCCCCcEEEEEEcCc
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
-.+-.+......++.+- + +......|.+++..+..+.+++.. .++.|.+|++
T Consensus 165 ~~~~~i~~~~~~~~~~~~p~---------------~~~~~~~I~~v~~d~~r~~ly~l~-~~~~Iq~w~l 218 (422)
T PF08801_consen 165 GRCSKINHTSSSIFSSLLPS---------------FSDPRPKIVQVAVDPSRRLLYTLT-SDGSIQVWDL 218 (422)
T ss_dssp ------------------------------------------EEEEEEETTTTEEEEEE-SSE-EEEEEE
T ss_pred CCccccccccCceeccccCC---------------cccchhceeeEEecCCcCEEEEEe-CCCcEEEEEE
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.12 E-value=91 Score=29.55 Aligned_cols=147 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe---EEEEEccC-
Q 006808 30 KIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD---VLALAVSA- 105 (630)
Q Consensus 30 ~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~---v~iwd~~~- 105 (630)
.+||..+++...--.....-..+-.+.++ ++++.+|+..+- +++++...
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~d---------------------------G~ll~tGG~~~G~~~ir~~~p~~~ 101 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPD---------------------------GRLLQTGGDNDGNKAIRIFTPCTS 101 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCC---------------------------CCEEEeCCCCccccceEEEecCCC
Q ss_pred ----CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec----------CCCCeEEEEEccCC
Q 006808 106 ----GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----------STKGISCMAVSSDG 171 (630)
Q Consensus 106 ----~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------~~~~v~~l~~~p~~ 171 (630)
.-....-.-.....=-....-|||+.|+.|+...-..-+--.....-..+.. ...-.-.+-..|+|
T Consensus 102 ~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG 181 (243)
T PF07250_consen 102 DGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG 181 (243)
T ss_pred CCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC
Q ss_pred CEEEEeCCeEEEEECCCCceeeEeecCCCCeE
Q 006808 172 KMLATAAGQLKTFNCSDHKKMQKFSGHPGAVR 203 (630)
Q Consensus 172 ~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~ 203 (630)
++++.+...-.|||..+++.++.++.-.+.++
T Consensus 182 ~lFi~an~~s~i~d~~~n~v~~~lP~lPg~~R 213 (243)
T PF07250_consen 182 NLFIFANRGSIIYDYKTNTVVRTLPDLPGGPR 213 (243)
T ss_pred CEEEEEcCCcEEEeCCCCeEEeeCCCCCCCce
No 497
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.65 E-value=37 Score=26.36 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred EEEEEecC-CCEEEEEeCC-----------------CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC----
Q 006808 121 SAISFATH-GSCIYSAGAD-----------------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---- 178 (630)
Q Consensus 121 ~~~~~s~~-g~~l~s~~~d-----------------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---- 178 (630)
.++++.++ |...+|-+.. |.+..||..+++....+.+-.-+ +.++++||+.+++++-
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fp-NGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFP-NGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSE-EEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCcc-CeEEEcCCCCEEEEEeccCc
Q ss_pred CeEEEE
Q 006808 179 GQLKTF 184 (630)
Q Consensus 179 g~i~lw 184 (630)
...+.|
T Consensus 80 Ri~ryw 85 (89)
T PF03088_consen 80 RILRYW 85 (89)
T ss_dssp EEEEEE
T ss_pred eEEEEE
No 498
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=71.31 E-value=98 Score=29.62 Aligned_cols=235 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred ceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 7 RDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 7 ~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
+++ +-+|||..-.++...|.|--.|-.+|+....-.+.......++..|+ +
T Consensus 65 ~dv--apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpd---------------------------g 115 (353)
T COG4257 65 FDV--APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPD---------------------------G 115 (353)
T ss_pred ccc--ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCC---------------------------C
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEcc---CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~---~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
..-++-+.. -|.-.|.++.+.. ++. ..-........|.+.|++-+++ ..|.---.|..++....--......-+
T Consensus 116 ~~Witd~~~-aI~R~dpkt~evt-~f~lp~~~a~~nlet~vfD~~G~lWFt~-q~G~yGrLdPa~~~i~vfpaPqG~gpy 192 (353)
T COG4257 116 SAWITDTGL-AIGRLDPKTLEVT-RFPLPLEHADANLETAVFDPWGNLWFTG-QIGAYGRLDPARNVISVFPAPQGGGPY 192 (353)
T ss_pred CeeEecCcc-eeEEecCcccceE-EeecccccCCCcccceeeCCCccEEEee-ccccceecCcccCceeeeccCCCCCCc
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.|+..|+|...++.- +-|-..|..++. .+-.-.......+.+--+|.|+.-++.. ..+.+..+|.....-.
T Consensus 193 Gi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~sW~---- 267 (353)
T COG4257 193 GICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVTSWI---- 267 (353)
T ss_pred ceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEecc-CCceeeEeCcccccce----
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
...+......-..+... ..++.-++--..|.|.-||-.+
T Consensus 268 eypLPgs~arpys~rVD-----~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 268 EYPLPGSKARPYSMRVD-----RHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred eeeCCCCCCCcceeeec-----cCCcEEeeccccCceeecCccc
No 499
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=70.92 E-value=94 Score=29.25 Aligned_cols=189 Identities=11% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEe
Q 006808 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (630)
+|+-..+++.-..+-++|||+ +|+.++.+.........+.+.-.+-..... |++++
T Consensus 64 ~P~kS~vItt~Kk~Gl~VYDL-sGkqLqs~~~Gk~NNVDLrygF~LgG~~id-----------------------iaaAS 119 (364)
T COG4247 64 NPDKSLVITTVKKAGLRVYDL-SGKQLQSVNPGKYNNVDLRYGFQLGGQSID-----------------------IAAAS 119 (364)
T ss_pred CcCcceEEEeeccCCeEEEec-CCCeeeecCCCcccccccccCcccCCeEEE-----------------------EEecc
Q ss_pred CCCe--EEEEEccCCeeeEEccCCC-------CCCEEEEEEecCCC----EEEEEeCCCcEEEEeCC-------CCceeE
Q 006808 94 GGGD--VLALAVSAGQLKWRLSDCH-------PGGVSAISFATHGS----CIYSAGADGMVCEIDPL-------TGSLLG 153 (630)
Q Consensus 94 ~~g~--v~iwd~~~~~~~~~~~~~h-------~~~v~~~~~s~~g~----~l~s~~~dg~v~iwd~~-------~~~~~~ 153 (630)
.... |.+|.+............. .+.+..+++..+.+ +++....+|.+.-|.+. ..+.++
T Consensus 120 dR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR 199 (364)
T COG4247 120 DRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVR 199 (364)
T ss_pred cccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeE
Q ss_pred EeecCCCCeEEEEEccCCCEEEEeCCeEEEEECC-------CCceeeEeecCCC-----CeEEEEEeeCCc-EEEEEeeC
Q 006808 154 KFRASTKGISCMAVSSDGKMLATAAGQLKTFNCS-------DHKKMQKFSGHPG-----AVRFMTFSDNGK-YVLSSAVG 220 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~-------~~~~~~~~~~h~~-----~v~~l~~sp~~~-~l~~~~~~ 220 (630)
.|+ .......+.....--.|..+--.+-+|.+. +++.+.+..+... .-..+-+-|+|+ ||+.++..
T Consensus 200 ~fk-~~tQTEG~VaDdEtG~LYIaeEdvaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQG 278 (364)
T COG4247 200 QFK-IPTQTEGMVADDETGFLYIAEEDVAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQG 278 (364)
T ss_pred eee-cCCcccceeeccccceEEEeeccceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCC
Q ss_pred CCeEEEE
Q 006808 221 ERYIALW 227 (630)
Q Consensus 221 d~~i~vw 227 (630)
+++..+|
T Consensus 279 nNtya~y 285 (364)
T COG4247 279 NNTYAAY 285 (364)
T ss_pred CceEEEE
No 500
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=70.61 E-value=25 Score=27.05 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=0.0
Q ss_pred CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 179 g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+.|..|| ++..+.....-...+.|.++|++++|++++...+.|++|.....
T Consensus 36 ~~Vvyyd---~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 36 GNVVYYD---GKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred ceEEEEe---CCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecCC
Done!