Query 006808
Match_columns 630
No_of_seqs 589 out of 3918
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.5E-40 8.5E-45 344.1 35.3 280 3-379 108-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 1.1E-39 3.8E-44 330.5 36.7 281 3-378 55-340 (340)
3 1nr0_A Actin interacting prote 100.0 2.6E-39 8.9E-44 354.2 40.2 345 3-381 59-567 (611)
4 2pbi_B Guanine nucleotide-bind 100.0 9.8E-39 3.4E-43 325.2 36.1 282 3-378 64-354 (354)
5 3ow8_A WD repeat-containing pr 100.0 1E-38 3.5E-43 320.3 35.3 280 3-379 32-319 (321)
6 1nr0_A Actin interacting prote 100.0 1.6E-38 5.5E-43 348.0 36.0 322 3-379 147-609 (611)
7 2ynn_A Coatomer subunit beta'; 100.0 4.1E-37 1.4E-41 306.4 37.0 243 3-286 13-262 (304)
8 4gqb_B Methylosome protein 50; 100.0 1.2E-37 4E-42 315.1 32.4 290 4-380 31-330 (344)
9 3iz6_a 40S ribosomal protein R 100.0 5E-38 1.7E-42 323.5 28.9 289 3-381 66-375 (380)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 8E-37 2.7E-41 310.1 36.0 298 5-381 18-335 (345)
11 4ery_A WD repeat-containing pr 100.0 1.7E-36 5.6E-41 303.4 37.1 281 3-379 23-310 (312)
12 3frx_A Guanine nucleotide-bind 100.0 1.5E-36 5.1E-41 304.5 36.6 286 3-380 17-316 (319)
13 2ymu_A WD-40 repeat protein; u 100.0 1.4E-36 4.6E-41 331.0 37.2 311 3-378 262-577 (577)
14 4g56_B MGC81050 protein; prote 100.0 3E-37 1E-41 314.5 28.4 284 3-380 42-342 (357)
15 1erj_A Transcriptional repress 100.0 3.9E-36 1.3E-40 310.8 36.5 302 3-380 64-388 (393)
16 2xzm_R RACK1; ribosome, transl 100.0 4E-35 1.4E-39 297.4 37.0 292 3-381 21-340 (343)
17 1r5m_A SIR4-interacting protei 100.0 9E-36 3.1E-40 311.0 32.1 335 4-380 46-424 (425)
18 2hes_X YDR267CP; beta-propelle 100.0 4.9E-35 1.7E-39 295.0 32.9 287 3-380 14-327 (330)
19 2ymu_A WD-40 repeat protein; u 100.0 7.7E-35 2.6E-39 317.2 36.0 313 3-380 221-538 (577)
20 3ow8_A WD repeat-containing pr 100.0 2.3E-34 7.9E-39 288.6 35.6 238 4-282 81-320 (321)
21 1gxr_A ESG1, transducin-like e 100.0 1.6E-34 5.5E-39 291.6 31.9 318 2-379 8-335 (337)
22 2pm9_A Protein WEB1, protein t 100.0 5.7E-36 1.9E-40 312.0 21.2 332 5-380 14-413 (416)
23 3vl1_A 26S proteasome regulato 100.0 2.6E-35 9E-40 307.5 24.8 319 10-381 61-419 (420)
24 1vyh_C Platelet-activating fac 100.0 3.4E-34 1.2E-38 297.8 32.6 238 3-281 150-409 (410)
25 3zwl_B Eukaryotic translation 100.0 2.1E-33 7E-38 287.2 36.0 294 3-381 32-346 (369)
26 4aow_A Guanine nucleotide-bind 100.0 3.2E-33 1.1E-37 282.7 36.1 289 3-381 38-337 (340)
27 2ynn_A Coatomer subunit beta'; 100.0 1E-33 3.6E-38 281.8 31.8 231 86-381 25-259 (304)
28 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-33 5.1E-38 334.7 37.8 322 3-382 615-1035(1249)
29 4gqb_B Methylosome protein 50; 100.0 2.2E-33 7.7E-38 283.7 32.6 242 4-284 83-332 (344)
30 1k8k_C P40, ARP2/3 complex 41 100.0 2E-33 6.7E-38 288.0 31.9 319 2-381 7-361 (372)
31 3dm0_A Maltose-binding peripla 100.0 2.6E-33 8.8E-38 311.8 35.2 298 3-380 382-692 (694)
32 4h5i_A Guanine nucleotide-exch 100.0 8.5E-34 2.9E-38 289.8 27.8 283 4-380 15-342 (365)
33 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-34 7.1E-39 306.1 23.6 309 22-380 178-516 (524)
34 3k26_A Polycomb protein EED; W 100.0 4.3E-33 1.5E-37 284.6 31.1 297 3-380 18-365 (366)
35 3i2n_A WD repeat-containing pr 100.0 5.6E-33 1.9E-37 282.8 31.1 310 3-381 18-353 (357)
36 1got_B GT-beta; complex (GTP-b 100.0 2.2E-32 7.4E-37 276.9 34.8 236 3-280 97-340 (340)
37 3mkq_A Coatomer beta'-subunit; 100.0 7E-33 2.4E-37 314.5 34.8 248 3-291 13-267 (814)
38 3ei3_B DNA damage-binding prot 100.0 9.6E-33 3.3E-37 284.5 32.7 286 3-380 73-381 (383)
39 3sfz_A APAF-1, apoptotic pepti 100.0 4E-33 1.4E-37 330.9 33.8 339 3-381 657-1116(1249)
40 3dwl_C Actin-related protein 2 100.0 3.6E-34 1.2E-38 294.4 21.0 241 3-282 11-280 (377)
41 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-32 7E-37 288.0 33.9 304 12-380 124-441 (445)
42 1erj_A Transcriptional repress 100.0 4.7E-32 1.6E-36 280.2 35.5 241 9-283 127-389 (393)
43 1pgu_A Actin interacting prote 100.0 4.1E-32 1.4E-36 297.8 36.4 338 4-380 64-613 (615)
44 2pm7_B Protein transport prote 100.0 3.3E-32 1.1E-36 270.0 31.6 246 3-282 9-284 (297)
45 4e54_B DNA damage-binding prot 100.0 8.6E-33 3E-37 289.8 27.6 281 5-381 121-430 (435)
46 1sq9_A Antiviral protein SKI8; 100.0 3.8E-32 1.3E-36 281.3 32.0 304 3-381 16-395 (397)
47 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-32 1.1E-36 309.2 33.9 337 3-382 58-606 (902)
48 4aez_A CDC20, WD repeat-contai 100.0 7.4E-32 2.5E-36 279.6 32.7 277 9-381 97-380 (401)
49 3frx_A Guanine nucleotide-bind 100.0 2.2E-31 7.5E-36 266.9 35.0 240 3-284 65-318 (319)
50 3dw8_B Serine/threonine-protei 100.0 5.1E-32 1.7E-36 285.0 31.5 257 3-287 28-377 (447)
51 2oaj_A Protein SNI1; WD40 repe 100.0 3.3E-32 1.1E-36 308.9 32.2 197 3-234 17-245 (902)
52 4gga_A P55CDC, cell division c 100.0 3.8E-31 1.3E-35 276.0 36.3 274 10-380 110-394 (420)
53 4a11_B DNA excision repair pro 100.0 1.7E-31 5.7E-36 277.1 32.9 300 3-381 43-365 (408)
54 2pbi_B Guanine nucleotide-bind 100.0 3.8E-31 1.3E-35 269.2 34.1 236 4-280 107-354 (354)
55 3iz6_a 40S ribosomal protein R 100.0 1.5E-31 5.1E-36 275.1 30.6 248 3-285 108-377 (380)
56 1pgu_A Actin interacting prote 100.0 1.2E-31 4.2E-36 294.0 31.7 313 3-379 18-364 (615)
57 3odt_A Protein DOA1; ubiquitin 100.0 5.7E-31 2E-35 262.7 33.0 272 3-381 18-296 (313)
58 3gre_A Serine/threonine-protei 100.0 2.4E-32 8.2E-37 286.8 24.2 316 3-378 63-437 (437)
59 1gxr_A ESG1, transducin-like e 100.0 7.8E-31 2.7E-35 264.5 34.3 279 3-327 51-334 (337)
60 2hes_X YDR267CP; beta-propelle 100.0 2.5E-31 8.5E-36 267.8 30.1 243 3-283 58-328 (330)
61 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.2E-31 1.8E-35 267.3 32.4 252 3-289 61-341 (345)
62 3v7d_B Cell division control p 100.0 4E-31 1.4E-35 279.8 32.9 304 12-378 127-460 (464)
63 2xzm_R RACK1; ribosome, transl 100.0 1E-30 3.5E-35 265.0 33.9 243 3-285 76-342 (343)
64 4g56_B MGC81050 protein; prote 100.0 2.5E-31 8.7E-36 270.7 29.0 242 4-284 95-344 (357)
65 4ggc_A P55CDC, cell division c 100.0 4.7E-30 1.6E-34 256.7 35.6 274 10-380 30-314 (318)
66 3mkq_A Coatomer beta'-subunit; 100.0 5.5E-31 1.9E-35 298.9 32.0 334 3-382 55-461 (814)
67 3bg1_A Protein SEC13 homolog; 100.0 1.6E-31 5.5E-36 267.5 23.7 245 3-282 13-292 (316)
68 2pm9_A Protein WEB1, protein t 100.0 3.7E-31 1.3E-35 275.5 26.7 246 3-287 67-341 (416)
69 3vl1_A 26S proteasome regulato 100.0 9.3E-31 3.2E-35 273.0 28.4 236 11-284 103-366 (420)
70 1p22_A F-BOX/WD-repeat protein 100.0 7.3E-30 2.5E-34 267.7 35.0 272 12-381 138-414 (435)
71 4ery_A WD repeat-containing pr 100.0 1.3E-29 4.4E-34 253.2 33.6 239 3-282 65-311 (312)
72 4aez_A CDC20, WD repeat-contai 100.0 7.7E-30 2.6E-34 264.4 32.6 247 3-289 134-386 (401)
73 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-30 4.2E-35 269.9 26.2 295 4-369 16-349 (588)
74 1yfq_A Cell cycle arrest prote 100.0 1.9E-30 6.3E-35 262.7 27.2 274 3-379 11-322 (342)
75 1r5m_A SIR4-interacting protei 100.0 2.9E-30 9.8E-35 269.2 29.2 276 3-327 108-422 (425)
76 3f3f_A Nucleoporin SEH1; struc 100.0 7.2E-30 2.5E-34 258.3 30.7 252 3-289 11-343 (351)
77 3jrp_A Fusion protein of prote 100.0 9.1E-30 3.1E-34 261.2 31.5 249 3-285 11-289 (379)
78 2aq5_A Coronin-1A; WD40 repeat 100.0 7.1E-30 2.4E-34 264.9 30.7 280 11-381 40-342 (402)
79 3k26_A Polycomb protein EED; W 100.0 5.1E-30 1.7E-34 261.8 26.9 242 4-282 70-365 (366)
80 2pm7_B Protein transport prote 100.0 1.4E-29 4.7E-34 251.1 29.2 246 67-380 11-284 (297)
81 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-29 7.7E-34 257.8 30.2 251 3-287 52-365 (372)
82 3mmy_A MRNA export factor; mRN 100.0 8E-29 2.8E-33 252.9 33.6 279 3-379 39-344 (368)
83 3dm0_A Maltose-binding peripla 100.0 4.6E-29 1.6E-33 277.5 34.3 240 3-282 430-692 (694)
84 3gre_A Serine/threonine-protei 100.0 2.6E-30 8.8E-35 271.3 22.2 299 12-382 34-360 (437)
85 3f3f_A Nucleoporin SEH1; struc 100.0 3.8E-29 1.3E-33 253.0 28.9 290 62-381 9-337 (351)
86 3jro_A Fusion protein of prote 100.0 1E-29 3.6E-34 284.4 26.5 250 3-286 9-288 (753)
87 1sq9_A Antiviral protein SKI8; 100.0 3.5E-29 1.2E-33 258.9 28.0 252 3-285 62-397 (397)
88 3bg1_A Protein SEC13 homolog; 100.0 1.4E-29 4.7E-34 253.5 23.8 245 67-380 15-292 (316)
89 4aow_A Guanine nucleotide-bind 100.0 5.3E-28 1.8E-32 244.2 35.6 246 3-285 86-339 (340)
90 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-28 4.7E-33 249.3 30.8 236 9-285 40-294 (343)
91 3i2n_A WD repeat-containing pr 100.0 5.4E-29 1.9E-33 253.3 27.6 250 3-286 65-356 (357)
92 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-29 3.8E-34 269.7 23.3 252 4-282 208-516 (524)
93 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-28 5.4E-33 258.7 31.3 255 4-281 5-337 (450)
94 3dwl_C Actin-related protein 2 100.0 2.4E-29 8.2E-34 258.4 23.8 196 3-230 55-280 (377)
95 3v7d_B Cell division control p 100.0 1.5E-28 5E-33 260.0 30.3 242 3-289 162-427 (464)
96 4gga_A P55CDC, cell division c 100.0 1E-27 3.5E-32 250.0 34.9 243 4-288 148-400 (420)
97 3jrp_A Fusion protein of prote 100.0 1.3E-28 4.3E-33 252.6 27.5 246 67-380 13-286 (379)
98 3zwl_B Eukaryotic translation 100.0 1.1E-27 3.8E-32 244.6 32.9 242 3-287 74-350 (369)
99 2xyi_A Probable histone-bindin 100.0 3.1E-28 1.1E-32 254.7 29.2 248 3-284 128-411 (430)
100 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-27 4.9E-32 242.8 31.5 295 3-380 19-335 (355)
101 3ei3_B DNA damage-binding prot 100.0 5E-28 1.7E-32 249.2 27.7 239 3-283 118-382 (383)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 6.2E-28 2.1E-32 250.2 27.4 246 3-285 81-344 (402)
103 3odt_A Protein DOA1; ubiquitin 100.0 7.1E-27 2.4E-31 232.9 33.0 237 3-289 59-302 (313)
104 4e54_B DNA damage-binding prot 100.0 3E-28 1E-32 255.3 23.9 246 3-286 164-433 (435)
105 2xyi_A Probable histone-bindin 100.0 2.3E-27 7.9E-32 248.1 30.1 255 66-381 129-410 (430)
106 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.4E-27 2.2E-31 246.1 32.3 264 3-322 159-430 (445)
107 4h5i_A Guanine nucleotide-exch 100.0 2.5E-27 8.5E-32 241.8 26.5 193 10-232 138-344 (365)
108 3bws_A Protein LP49; two-domai 100.0 1.5E-26 5E-31 242.3 32.6 280 9-380 126-431 (433)
109 4ggc_A P55CDC, cell division c 100.0 3.9E-26 1.3E-30 228.2 33.7 240 4-285 68-317 (318)
110 4gq1_A NUP37; propeller, trans 100.0 4.6E-27 1.6E-31 242.6 25.7 232 86-379 101-387 (393)
111 1p22_A F-BOX/WD-repeat protein 100.0 2.5E-26 8.4E-31 240.8 28.9 238 3-287 173-418 (435)
112 3dw8_B Serine/threonine-protei 100.0 2.4E-26 8.1E-31 241.6 28.4 257 4-281 94-444 (447)
113 3jro_A Fusion protein of prote 100.0 1E-26 3.5E-31 260.2 27.0 246 67-380 11-284 (753)
114 1l0q_A Surface layer protein; 100.0 2.4E-25 8.3E-30 229.6 34.7 266 18-382 3-276 (391)
115 4a11_B DNA excision repair pro 99.9 1.1E-25 3.9E-30 233.0 32.3 251 3-292 99-374 (408)
116 3lrv_A PRE-mRNA-splicing facto 99.9 1E-25 3.5E-30 228.2 27.6 243 4-280 77-330 (343)
117 1yfq_A Cell cycle arrest prote 99.9 6.4E-26 2.2E-30 229.2 24.3 250 66-382 12-283 (342)
118 2j04_A TAU60, YPL007P, hypothe 99.9 1.3E-26 4.3E-31 240.0 18.2 249 3-319 85-350 (588)
119 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.2E-25 1.4E-29 232.4 29.5 242 5-282 104-390 (450)
120 2w18_A PALB2, fancn, partner a 99.9 1.4E-24 4.8E-29 211.1 30.4 248 19-281 56-355 (356)
121 4gq1_A NUP37; propeller, trans 99.9 1.2E-25 4.1E-30 232.0 22.2 244 12-281 96-387 (393)
122 3mmy_A MRNA export factor; mRN 99.9 8.3E-25 2.8E-29 223.1 26.5 260 67-382 41-305 (368)
123 2w18_A PALB2, fancn, partner a 99.9 5.2E-25 1.8E-29 214.1 22.2 210 4-229 112-355 (356)
124 1nir_A Nitrite reductase; hemo 99.9 3.2E-24 1.1E-28 229.6 29.9 324 12-381 144-514 (543)
125 1l0q_A Surface layer protein; 99.9 1.5E-23 5E-28 216.3 33.8 239 9-290 35-282 (391)
126 3vu4_A KMHSV2; beta-propeller 99.9 4.1E-24 1.4E-28 217.3 28.0 234 10-286 63-339 (355)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.1E-23 1.1E-27 215.2 32.2 305 12-363 69-411 (415)
128 3bws_A Protein LP49; two-domai 99.9 9.2E-23 3.1E-27 213.3 32.0 236 4-283 170-432 (433)
129 2ecf_A Dipeptidyl peptidase IV 99.9 2.2E-22 7.6E-27 225.6 31.3 342 4-380 37-458 (741)
130 3u4y_A Uncharacterized protein 99.9 1.5E-21 5.1E-26 196.2 28.6 287 12-382 4-305 (331)
131 1xfd_A DIP, dipeptidyl aminope 99.9 2.1E-22 7.2E-27 225.1 22.0 321 9-371 20-431 (723)
132 3vgz_A Uncharacterized protein 99.9 2.6E-20 8.7E-25 188.8 32.1 265 10-320 45-334 (353)
133 1nir_A Nitrite reductase; hemo 99.9 8.6E-21 2.9E-25 203.0 29.4 273 86-381 149-458 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.8E-20 9.4E-25 193.0 31.0 224 17-284 143-388 (415)
135 1pby_B Quinohemoprotein amine 99.9 1.3E-20 4.4E-25 189.6 25.7 269 18-381 2-310 (337)
136 2z3z_A Dipeptidyl aminopeptida 99.9 5.5E-21 1.9E-25 213.0 24.6 334 12-382 32-436 (706)
137 2ojh_A Uncharacterized protein 99.9 4.6E-20 1.6E-24 181.5 26.5 221 22-284 17-259 (297)
138 1ri6_A Putative isomerase YBHE 99.9 1.2E-19 4.2E-24 182.8 29.5 274 19-380 7-307 (343)
139 3u4y_A Uncharacterized protein 99.9 2.2E-19 7.5E-24 180.3 29.3 237 10-284 44-305 (331)
140 1ri6_A Putative isomerase YBHE 99.9 4.7E-19 1.6E-23 178.6 29.8 235 9-282 41-307 (343)
141 1k32_A Tricorn protease; prote 99.8 9.8E-20 3.4E-24 211.4 26.5 267 87-379 215-500 (1045)
142 1k32_A Tricorn protease; prote 99.8 5.5E-19 1.9E-23 205.1 31.4 241 10-284 249-503 (1045)
143 2ojh_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 175.5 24.4 231 4-274 42-293 (297)
144 1jmx_B Amine dehydrogenase; ox 99.8 3E-19 1E-23 180.6 24.7 238 11-290 5-332 (349)
145 2oit_A Nucleoporin 214KDA; NH2 99.8 1.2E-19 4.1E-24 188.9 22.2 210 10-233 41-280 (434)
146 3hfq_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 172.8 29.4 242 10-286 44-322 (347)
147 2ecf_A Dipeptidyl peptidase IV 99.8 3.2E-19 1.1E-23 200.0 23.5 280 67-380 38-412 (741)
148 1z68_A Fibroblast activation p 99.8 2.6E-19 8.8E-24 199.9 21.3 328 10-380 20-442 (719)
149 3hfq_A Uncharacterized protein 99.8 2E-17 6.8E-22 167.3 31.5 233 86-379 51-315 (347)
150 3vgz_A Uncharacterized protein 99.8 1.7E-17 5.9E-22 167.9 30.7 233 10-274 93-335 (353)
151 1pby_B Quinohemoprotein amine 99.8 5.1E-18 1.8E-22 170.5 26.0 241 9-290 37-317 (337)
152 3scy_A Hypothetical bacterial 99.8 4.2E-17 1.4E-21 165.9 31.0 239 10-286 54-342 (361)
153 3o4h_A Acylamino-acid-releasin 99.8 3.7E-18 1.3E-22 185.6 24.1 235 4-288 22-279 (582)
154 1xfd_A DIP, dipeptidyl aminope 99.8 5.3E-18 1.8E-22 189.4 25.4 239 9-283 64-393 (723)
155 2z3z_A Dipeptidyl aminopeptida 99.8 1E-17 3.4E-22 186.6 27.3 254 4-285 121-437 (706)
156 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.4E-17 3.2E-21 163.5 29.9 240 9-284 43-342 (365)
157 4a5s_A Dipeptidyl peptidase 4 99.8 4.4E-17 1.5E-21 182.1 29.3 246 9-286 20-356 (740)
158 3scy_A Hypothetical bacterial 99.8 4.6E-16 1.6E-20 158.2 31.2 236 12-282 8-290 (361)
159 3pe7_A Oligogalacturonate lyas 99.8 2.8E-16 9.7E-21 161.3 29.8 306 30-379 13-380 (388)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 7.7E-17 2.6E-21 167.6 25.0 199 4-229 93-331 (434)
161 1jmx_B Amine dehydrogenase; ox 99.7 3E-16 1E-20 158.4 25.3 257 86-381 11-325 (349)
162 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.4E-15 4.7E-20 154.9 26.8 191 86-282 51-290 (365)
163 1q7f_A NHL, brain tumor CG1071 99.7 1.3E-14 4.3E-19 142.3 31.8 241 9-284 33-281 (286)
164 3pe7_A Oligogalacturonate lyas 99.7 7E-16 2.4E-20 158.4 23.2 238 11-286 41-332 (388)
165 1z68_A Fibroblast activation p 99.7 3.1E-16 1.1E-20 174.9 18.9 282 70-380 20-390 (719)
166 3fvz_A Peptidyl-glycine alpha- 99.7 1.3E-14 4.6E-19 145.2 28.1 242 4-283 24-322 (329)
167 3c5m_A Oligogalacturonate lyas 99.7 1.1E-15 3.9E-20 157.1 20.3 233 10-285 40-331 (396)
168 3o4h_A Acylamino-acid-releasin 99.7 8E-16 2.7E-20 167.1 19.6 265 66-379 22-313 (582)
169 3azo_A Aminopeptidase; POP fam 99.6 4.1E-14 1.4E-18 156.1 28.1 249 4-285 24-327 (662)
170 2dg1_A DRP35, lactonase; beta 99.6 5.7E-14 2E-18 140.8 26.6 241 1-281 3-261 (333)
171 1qks_A Cytochrome CD1 nitrite 99.6 2.1E-13 7.2E-18 145.4 32.2 233 13-283 163-421 (567)
172 2oiz_A Aromatic amine dehydrog 99.6 4.5E-14 1.5E-18 143.1 22.8 293 15-362 13-360 (361)
173 4a5s_A Dipeptidyl peptidase 4 99.6 3.9E-14 1.3E-18 158.2 23.7 194 11-233 67-355 (740)
174 3fvz_A Peptidyl-glycine alpha- 99.6 5.7E-13 2E-17 133.3 26.9 222 96-380 69-321 (329)
175 2xdw_A Prolyl endopeptidase; a 99.6 1.1E-12 3.6E-17 145.9 31.5 237 9-285 128-416 (710)
176 3no2_A Uncharacterized protein 99.6 9.8E-13 3.4E-17 127.6 27.2 216 15-271 3-231 (276)
177 1rwi_B Serine/threonine-protei 99.6 1E-12 3.5E-17 127.2 27.3 238 9-286 27-267 (270)
178 2oiz_A Aromatic amine dehydrog 99.6 9.8E-13 3.3E-17 133.2 27.6 237 10-290 54-343 (361)
179 3c5m_A Oligogalacturonate lyas 99.5 4.5E-13 1.5E-17 137.6 22.9 248 11-284 86-385 (396)
180 3e5z_A Putative gluconolactona 99.5 1.3E-12 4.4E-17 128.6 25.1 231 10-286 32-289 (296)
181 3dsm_A Uncharacterized protein 99.5 2.3E-12 8E-17 128.7 26.5 235 12-291 50-309 (328)
182 2gop_A Trilobed protease; beta 99.5 3.5E-12 1.2E-16 128.5 26.7 213 12-282 21-290 (347)
183 2dg1_A DRP35, lactonase; beta 99.5 1.7E-11 5.7E-16 122.8 30.7 226 10-274 49-301 (333)
184 3azo_A Aminopeptidase; POP fam 99.5 8.8E-13 3E-17 145.5 23.0 196 12-233 83-327 (662)
185 2xdw_A Prolyl endopeptidase; a 99.5 6.6E-12 2.3E-16 139.5 29.4 201 67-286 126-371 (710)
186 1qks_A Cytochrome CD1 nitrite 99.5 1.3E-11 4.6E-16 131.5 30.3 192 86-289 167-379 (567)
187 2gop_A Trilobed protease; beta 99.5 2.5E-12 8.7E-17 129.5 23.1 218 9-282 62-330 (347)
188 1q7f_A NHL, brain tumor CG1071 99.5 2.2E-11 7.7E-16 118.9 26.7 192 9-232 80-281 (286)
189 3no2_A Uncharacterized protein 99.5 5.2E-12 1.8E-16 122.5 21.5 188 86-290 5-202 (276)
190 2bkl_A Prolyl endopeptidase; m 99.5 8.2E-12 2.8E-16 138.3 25.8 237 13-282 75-348 (695)
191 2bkl_A Prolyl endopeptidase; m 99.5 6E-12 2E-16 139.4 24.3 237 9-285 124-399 (695)
192 3e5z_A Putative gluconolactona 99.5 2E-11 6.7E-16 120.1 25.5 190 68-282 30-245 (296)
193 3dsm_A Uncharacterized protein 99.4 5E-11 1.7E-15 119.0 27.1 223 25-286 15-256 (328)
194 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 7E-11 2.4E-15 117.0 27.1 236 10-283 22-299 (314)
195 2z2n_A Virginiamycin B lyase; 99.4 5.1E-10 1.7E-14 109.7 31.1 232 9-281 18-253 (299)
196 3g4e_A Regucalcin; six bladed 99.4 4.2E-10 1.4E-14 110.6 28.0 200 69-288 16-234 (297)
197 2z2n_A Virginiamycin B lyase; 99.4 1.3E-09 4.4E-14 106.8 31.3 233 9-284 60-296 (299)
198 2mad_H Methylamine dehydrogena 99.3 1.7E-09 5.9E-14 109.4 32.2 186 12-233 27-245 (373)
199 1yr2_A Prolyl oligopeptidase; 99.3 1.6E-10 5.6E-15 128.8 26.7 236 9-285 166-443 (741)
200 3hrp_A Uncharacterized protein 99.3 6.4E-10 2.2E-14 114.3 29.1 233 9-281 134-408 (409)
201 2mad_H Methylamine dehydrogena 99.3 1.8E-09 6.2E-14 109.3 31.2 241 11-289 71-356 (373)
202 3iuj_A Prolyl endopeptidase; h 99.3 2.5E-10 8.4E-15 126.2 26.7 234 10-285 133-407 (693)
203 3sjl_D Methylamine dehydrogena 99.3 4.1E-10 1.4E-14 112.6 24.8 239 11-291 83-371 (386)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1E-09 3.4E-14 108.6 27.1 191 86-285 29-258 (314)
205 1yr2_A Prolyl oligopeptidase; 99.3 2.6E-10 8.9E-15 127.2 24.8 194 67-282 164-392 (741)
206 2qc5_A Streptogramin B lactona 99.3 4.7E-09 1.6E-13 102.8 31.0 232 9-281 23-258 (300)
207 1rwi_B Serine/threonine-protei 99.3 2.5E-10 8.5E-15 110.3 20.9 194 10-233 71-266 (270)
208 3sjl_D Methylamine dehydrogena 99.3 1.7E-09 5.8E-14 108.1 25.7 276 86-381 44-363 (386)
209 1xip_A Nucleoporin NUP159; bet 99.3 6.5E-11 2.2E-15 118.9 15.3 183 5-218 39-232 (388)
210 2qc5_A Streptogramin B lactona 99.2 1.1E-08 3.8E-13 100.1 29.9 230 9-281 65-298 (300)
211 2ghs_A AGR_C_1268P; regucalcin 99.2 7.4E-09 2.5E-13 103.1 28.7 192 69-281 52-258 (326)
212 3c75_H MADH, methylamine dehyd 99.2 2.7E-09 9.2E-14 108.7 25.1 237 11-290 123-409 (426)
213 1yiq_A Quinohemoprotein alcoho 99.2 1.8E-09 6.1E-14 118.5 24.9 241 16-292 120-514 (689)
214 3g4e_A Regucalcin; six bladed 99.2 9.9E-09 3.4E-13 100.7 26.8 219 11-272 18-261 (297)
215 2ece_A 462AA long hypothetical 99.2 7.3E-09 2.5E-13 104.1 24.9 234 12-271 88-399 (462)
216 3c75_H MADH, methylamine dehyd 99.2 3.3E-09 1.1E-13 108.1 22.5 185 15-233 82-297 (426)
217 1kb0_A Quinohemoprotein alcoho 99.1 3.4E-09 1.2E-13 116.0 23.0 242 16-292 127-516 (677)
218 2ghs_A AGR_C_1268P; regucalcin 99.1 4.5E-08 1.5E-12 97.4 28.8 218 10-272 53-291 (326)
219 1xip_A Nucleoporin NUP159; bet 99.1 1.3E-09 4.3E-14 109.5 16.2 144 68-233 40-193 (388)
220 3hrp_A Uncharacterized protein 99.1 2.8E-08 9.6E-13 102.0 25.8 186 86-285 142-356 (409)
221 2hz6_A Endoplasmic reticulum t 99.1 9.3E-11 3.2E-15 118.9 6.6 183 16-235 8-196 (369)
222 2qe8_A Uncharacterized protein 99.1 3.3E-09 1.1E-13 106.5 17.4 240 10-280 21-318 (343)
223 2iwa_A Glutamine cyclotransfer 99.1 4.4E-08 1.5E-12 92.7 23.8 190 11-232 26-238 (266)
224 1fwx_A Nitrous oxide reductase 99.0 2.5E-08 8.5E-13 103.9 23.3 241 15-285 99-433 (595)
225 1yiq_A Quinohemoprotein alcoho 99.0 3.3E-08 1.1E-12 108.5 25.5 199 17-235 70-342 (689)
226 3dr2_A Exported gluconolactona 99.0 2.7E-08 9.4E-13 97.9 20.5 218 10-275 49-299 (305)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.0 6.5E-08 2.2E-12 98.3 23.4 233 16-289 52-302 (376)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.4E-07 5E-12 95.7 25.7 226 16-290 102-344 (376)
229 2hz6_A Endoplasmic reticulum t 99.0 1.9E-10 6.5E-15 116.6 3.7 184 86-290 9-199 (369)
230 1mda_H Methylamine dehydrogena 98.9 1.1E-08 3.7E-13 102.5 15.5 231 11-291 70-354 (368)
231 2ece_A 462AA long hypothetical 98.9 1.8E-07 6.2E-12 94.0 23.6 190 86-282 96-351 (462)
232 1fwx_A Nitrous oxide reductase 98.9 2.9E-07 1E-11 95.9 25.6 190 86-283 101-361 (595)
233 1kb0_A Quinohemoprotein alcoho 98.9 3.3E-07 1.1E-11 100.3 27.3 199 17-235 77-350 (677)
234 1kv9_A Type II quinohemoprotei 98.9 1.9E-07 6.7E-12 102.0 25.4 240 17-292 117-497 (668)
235 3dr2_A Exported gluconolactona 98.9 6.2E-08 2.1E-12 95.3 19.5 195 70-288 49-271 (305)
236 1mda_H Methylamine dehydrogena 98.9 7.6E-08 2.6E-12 96.3 17.8 125 97-231 47-194 (368)
237 3nol_A Glutamine cyclotransfer 98.8 3.5E-07 1.2E-11 85.3 20.3 173 12-218 49-243 (262)
238 3iuj_A Prolyl endopeptidase; h 98.8 1E-07 3.6E-12 105.1 18.2 195 67-284 130-360 (693)
239 2ad6_A Methanol dehydrogenase 98.8 1.1E-06 3.7E-11 94.1 25.4 238 17-291 115-502 (571)
240 1w6s_A Methanol dehydrogenase 98.8 1.1E-06 3.9E-11 93.8 25.1 244 12-291 112-511 (599)
241 2qe8_A Uncharacterized protein 98.8 4.5E-07 1.6E-11 90.7 20.3 189 9-218 70-309 (343)
242 3hxj_A Pyrrolo-quinoline quino 98.8 1.6E-07 5.4E-12 93.3 16.6 295 12-378 26-321 (330)
243 1npe_A Nidogen, entactin; glyc 98.7 7.6E-06 2.6E-10 78.5 27.6 200 68-290 38-245 (267)
244 3nok_A Glutaminyl cyclase; bet 98.7 7.2E-07 2.4E-11 83.2 18.5 173 12-218 61-253 (268)
245 3mbr_X Glutamine cyclotransfer 98.7 4.1E-06 1.4E-10 77.4 22.7 175 12-219 27-223 (243)
246 3hxj_A Pyrrolo-quinoline quino 98.7 2.3E-06 7.8E-11 84.8 22.2 175 87-282 148-323 (330)
247 1npe_A Nidogen, entactin; glyc 98.6 3.6E-05 1.2E-09 73.7 28.2 194 10-234 40-241 (267)
248 1flg_A Protein (quinoprotein e 98.6 8.4E-06 2.9E-10 87.3 25.8 244 17-292 117-525 (582)
249 2fp8_A Strictosidine synthase; 98.6 1.8E-05 6.2E-10 78.2 26.1 250 11-282 24-312 (322)
250 2iwa_A Glutamine cyclotransfer 98.6 2.9E-05 9.9E-10 73.3 25.2 182 88-284 33-238 (266)
251 1kv9_A Type II quinohemoprotei 98.6 9.2E-06 3.2E-10 88.7 24.3 198 17-235 66-337 (668)
252 2ad6_A Methanol dehydrogenase 98.5 4.7E-05 1.6E-09 81.4 27.8 197 17-235 62-339 (571)
253 1ijq_A LDL receptor, low-densi 98.5 0.00045 1.5E-08 67.8 31.4 230 19-287 3-242 (316)
254 2xe4_A Oligopeptidase B; hydro 98.4 4.7E-05 1.6E-09 84.5 26.0 191 10-229 178-398 (751)
255 3nol_A Glutamine cyclotransfer 98.4 1.5E-05 5.3E-10 74.2 17.8 157 119-290 44-208 (262)
256 3nok_A Glutaminyl cyclase; bet 98.4 1.7E-05 5.7E-10 74.0 17.3 158 118-290 55-217 (268)
257 2p4o_A Hypothetical protein; p 98.4 0.0002 6.7E-09 70.1 25.9 188 10-230 36-241 (306)
258 3v65_B Low-density lipoprotein 98.3 0.00072 2.5E-08 68.4 29.8 200 68-287 118-322 (386)
259 3v64_C Agrin; beta propeller, 98.3 0.0015 5.3E-08 64.9 31.3 199 68-287 75-279 (349)
260 3mbr_X Glutamine cyclotransfer 98.3 6.2E-05 2.1E-09 69.5 19.2 158 118-290 21-186 (243)
261 3p5b_L Low density lipoprotein 98.3 0.0015 5.1E-08 66.4 31.3 232 19-288 85-325 (400)
262 3sov_A LRP-6, low-density lipo 98.3 0.00061 2.1E-08 66.8 26.9 201 68-288 37-243 (318)
263 4a2l_A BT_4663, two-component 98.2 0.0027 9.2E-08 71.0 34.9 245 4-284 310-572 (795)
264 1w6s_A Methanol dehydrogenase 98.2 0.00033 1.1E-08 74.8 25.6 147 86-235 252-507 (599)
265 2fp8_A Strictosidine synthase; 98.2 0.00045 1.5E-08 68.0 24.3 185 86-281 30-267 (322)
266 1k3i_A Galactose oxidase precu 98.1 0.00021 7.2E-09 78.1 23.0 241 8-284 188-498 (656)
267 3qqz_A Putative uncharacterize 98.1 0.0017 6E-08 60.7 25.3 189 11-229 32-251 (255)
268 3v65_B Low-density lipoprotein 98.1 0.0032 1.1E-07 63.6 28.1 195 10-233 120-320 (386)
269 1flg_A Protein (quinoprotein e 98.1 0.00093 3.2E-08 71.4 25.1 137 96-235 291-520 (582)
270 4a2l_A BT_4663, two-component 98.0 0.0043 1.5E-07 69.4 31.7 239 5-284 358-615 (795)
271 3v64_C Agrin; beta propeller, 98.0 0.0042 1.4E-07 61.7 28.1 144 86-233 128-277 (349)
272 2p4o_A Hypothetical protein; p 98.0 0.0029 9.8E-08 61.6 26.4 182 86-281 43-240 (306)
273 3qqz_A Putative uncharacterize 98.0 0.0033 1.1E-07 58.8 24.6 196 67-281 28-251 (255)
274 1ijq_A LDL receptor, low-densi 97.9 0.011 3.7E-07 57.8 27.7 178 93-282 7-194 (316)
275 3tc9_A Hypothetical hydrolase; 97.9 0.0016 5.6E-08 66.7 22.7 148 10-187 141-300 (430)
276 3amr_A 3-phytase; beta-propell 97.9 0.0023 7.9E-08 62.2 22.1 189 17-230 40-262 (355)
277 3m0c_C LDL receptor, low-densi 97.9 0.015 5.2E-07 64.1 31.0 192 86-287 436-636 (791)
278 2xe4_A Oligopeptidase B; hydro 97.8 0.0012 4.2E-08 73.1 21.7 152 67-231 175-354 (751)
279 3p5b_L Low density lipoprotein 97.8 0.019 6.6E-07 58.1 28.9 145 86-233 171-322 (400)
280 3sov_A LRP-6, low-density lipo 97.8 0.011 3.9E-07 57.6 25.8 144 86-234 91-241 (318)
281 4hw6_A Hypothetical protein, I 97.8 0.0048 1.6E-07 63.3 24.0 189 10-229 143-372 (433)
282 1n7d_A LDL receptor, low-densi 97.8 0.00011 3.7E-09 80.5 11.8 191 88-290 419-621 (699)
283 3amr_A 3-phytase; beta-propell 97.8 0.019 6.6E-07 55.8 26.0 197 69-282 28-262 (355)
284 3v9f_A Two-component system se 97.7 0.0083 2.9E-07 66.9 26.9 242 9-285 316-570 (781)
285 3m0c_C LDL receptor, low-densi 97.7 0.02 6.9E-07 63.1 28.2 144 87-233 484-634 (791)
286 1k3i_A Galactose oxidase precu 97.7 0.0014 4.7E-08 71.5 18.7 224 11-272 248-530 (656)
287 4hw6_A Hypothetical protein, I 97.6 0.0079 2.7E-07 61.6 22.7 141 87-231 153-304 (433)
288 2p9w_A MAL S 1 allergenic prot 97.6 0.013 4.3E-07 56.6 22.2 152 69-231 16-215 (334)
289 3v9f_A Two-component system se 97.6 0.029 1E-06 62.4 28.4 236 4-284 363-612 (781)
290 2p9w_A MAL S 1 allergenic prot 97.5 0.033 1.1E-06 53.7 24.0 201 10-229 17-263 (334)
291 2vpj_A Kelch-like protein 12; 97.5 0.017 5.9E-07 55.8 22.9 183 86-284 63-279 (301)
292 2xzh_A Clathrin heavy chain 1; 97.5 0.063 2.1E-06 51.3 25.0 194 86-290 78-297 (365)
293 4a0p_A LRP6, LRP-6, low-densit 97.5 0.13 4.6E-06 55.1 31.1 227 19-285 8-239 (628)
294 3tc9_A Hypothetical hydrolase; 97.5 0.006 2E-07 62.5 19.2 141 87-231 150-301 (430)
295 3s94_A LRP-6, low-density lipo 97.4 0.053 1.8E-06 58.2 26.5 188 87-287 52-247 (619)
296 3kya_A Putative phosphatase; s 97.4 0.039 1.3E-06 56.8 24.0 151 10-186 143-339 (496)
297 3sre_A PON1, serum paraoxonase 97.4 0.022 7.5E-07 56.1 20.8 127 88-218 128-285 (355)
298 1bpo_A Protein (clathrin); cla 97.3 0.1 3.4E-06 52.0 24.7 194 86-290 77-296 (494)
299 1n7d_A LDL receptor, low-densi 97.3 0.0014 4.8E-08 71.7 12.5 143 86-233 465-616 (699)
300 3ii7_A Kelch-like protein 7; p 97.3 0.096 3.3E-06 50.5 24.5 183 86-284 56-273 (306)
301 2xn4_A Kelch-like protein 2; s 97.2 0.08 2.7E-06 51.0 23.5 183 86-284 62-277 (302)
302 3pbp_A Nucleoporin NUP82; beta 97.2 0.025 8.5E-07 56.2 18.9 146 127-279 30-208 (452)
303 2xbg_A YCF48-like protein; pho 97.2 0.2 6.7E-06 49.0 26.3 153 115-281 160-320 (327)
304 4a0p_A LRP6, LRP-6, low-densit 97.2 0.19 6.6E-06 53.9 27.6 145 88-233 8-157 (628)
305 3sre_A PON1, serum paraoxonase 97.2 0.074 2.5E-06 52.3 22.3 135 94-231 81-252 (355)
306 2xzh_A Clathrin heavy chain 1; 97.1 0.22 7.6E-06 47.6 26.9 239 5-286 66-335 (365)
307 1zgk_A Kelch-like ECH-associat 97.0 0.072 2.5E-06 51.6 21.0 173 96-284 90-288 (308)
308 2xbg_A YCF48-like protein; pho 97.0 0.096 3.3E-06 51.2 21.5 111 115-229 202-320 (327)
309 4asc_A Kelch repeat and BTB do 96.9 0.16 5.5E-06 49.2 22.4 142 86-233 46-223 (315)
310 3kya_A Putative phosphatase; s 96.9 0.032 1.1E-06 57.5 17.5 142 89-231 154-341 (496)
311 2ism_A Putative oxidoreductase 96.9 0.34 1.2E-05 47.8 24.3 198 10-232 35-298 (352)
312 3ei3_A DNA damage-binding prot 96.8 0.44 1.5E-05 54.9 28.0 140 86-231 844-999 (1158)
313 2woz_A Kelch repeat and BTB do 96.7 0.52 1.8E-05 45.6 23.8 130 98-233 80-233 (318)
314 2vpj_A Kelch-like protein 12; 96.6 0.24 8.3E-06 47.5 21.1 141 86-233 113-280 (301)
315 2be1_A Serine/threonine-protei 96.6 0.015 5.1E-07 56.8 11.6 118 18-158 11-140 (339)
316 1bpo_A Protein (clathrin); cla 96.5 0.82 2.8E-05 45.6 29.7 238 5-285 65-333 (494)
317 3a9g_A Putative uncharacterize 96.5 0.77 2.6E-05 45.3 26.9 199 9-232 32-297 (354)
318 2uvk_A YJHT; unknown function, 96.4 0.58 2E-05 46.1 22.8 21 16-36 19-40 (357)
319 3ei3_A DNA damage-binding prot 96.3 1.5 5E-05 50.6 28.0 176 96-283 807-999 (1158)
320 2xn4_A Kelch-like protein 2; s 96.3 0.37 1.3E-05 46.2 20.0 142 86-233 109-278 (302)
321 3s94_A LRP-6, low-density lipo 96.3 1.5 5.2E-05 46.8 29.9 143 88-233 362-512 (619)
322 1xi4_A Clathrin heavy chain; a 96.3 0.21 7.2E-06 57.3 19.8 195 86-291 77-297 (1630)
323 3ii7_A Kelch-like protein 7; p 96.2 0.34 1.2E-05 46.6 19.4 142 86-233 102-274 (306)
324 2g8s_A Glucose/sorbosone dehyd 96.0 1.2 4.2E-05 43.7 22.2 26 9-34 21-46 (353)
325 4asc_A Kelch repeat and BTB do 95.9 0.82 2.8E-05 44.1 20.5 180 89-284 8-222 (315)
326 1tl2_A L10, protein (tachylect 95.9 0.54 1.8E-05 42.2 16.9 136 86-227 4-159 (236)
327 2be1_A Serine/threonine-protei 95.9 0.051 1.8E-06 53.0 11.2 196 86-288 10-236 (339)
328 1zgk_A Kelch-like ECH-associat 95.8 0.49 1.7E-05 45.5 17.9 184 86-284 25-241 (308)
329 2woz_A Kelch repeat and BTB do 95.7 0.8 2.7E-05 44.2 19.5 101 86-190 110-233 (318)
330 3sbq_A Nitrous-oxide reductase 95.7 2.4 8.1E-05 43.7 24.1 250 20-284 73-409 (638)
331 3pbp_A Nucleoporin NUP82; beta 95.5 0.33 1.1E-05 48.3 15.1 110 169-283 30-158 (452)
332 1xi4_A Clathrin heavy chain; a 95.4 0.71 2.4E-05 53.2 19.2 198 5-235 65-293 (1630)
333 3ott_A Two-component system se 95.1 5 0.00017 44.0 29.2 178 86-284 73-261 (758)
334 3das_A Putative oxidoreductase 95.0 2.9 9.8E-05 40.8 25.9 31 9-39 35-65 (347)
335 3s25_A Hypothetical 7-bladed b 94.7 2.1 7.2E-05 40.9 18.3 133 86-233 115-257 (302)
336 2ism_A Putative oxidoreductase 94.6 2.8 9.6E-05 41.1 19.6 57 161-218 269-333 (352)
337 3s25_A Hypothetical 7-bladed b 94.5 3.4 0.00012 39.4 21.7 123 96-233 88-218 (302)
338 3sbq_A Nitrous-oxide reductase 94.4 5.4 0.00018 41.2 22.6 70 161-232 324-409 (638)
339 2uvk_A YJHT; unknown function, 93.9 2.1 7.1E-05 42.0 17.0 135 96-234 168-345 (357)
340 1cru_A Protein (soluble quinop 93.6 7.2 0.00024 39.7 27.8 31 9-39 30-60 (454)
341 2zwa_A Leucine carboxyl methyl 93.6 2.8 9.4E-05 45.6 18.6 147 86-233 398-579 (695)
342 2zwa_A Leucine carboxyl methyl 93.4 6.8 0.00023 42.5 21.3 147 86-233 452-637 (695)
343 3a9g_A Putative uncharacterize 93.0 7.3 0.00025 38.1 23.2 126 89-217 42-215 (354)
344 2g8s_A Glucose/sorbosone dehyd 92.9 7.4 0.00025 38.0 25.0 129 86-216 29-214 (353)
345 1tl2_A L10, protein (tachylect 92.6 2.2 7.6E-05 38.3 12.9 137 130-277 5-157 (236)
346 1cru_A Protein (soluble quinop 88.9 22 0.00074 36.1 21.1 92 86-178 38-162 (454)
347 3ott_A Two-component system se 86.5 41 0.0014 36.6 29.3 181 86-283 429-626 (758)
348 3das_A Putative oxidoreductase 85.8 27 0.00091 33.9 26.2 131 86-217 43-219 (347)
349 4gq2_M Nucleoporin NUP120; bet 80.5 53 0.0018 36.9 17.9 38 119-156 237-274 (950)
350 4fhn_B Nucleoporin NUP120; pro 77.4 34 0.0012 39.4 15.5 38 119-156 239-276 (1139)
351 4gq2_M Nucleoporin NUP120; bet 77.1 28 0.00096 39.1 14.3 37 8-44 238-274 (950)
352 3no0_A DNA gyrase subunit A; D 76.9 48 0.0016 30.8 19.0 187 86-284 35-247 (276)
353 3qhy_B Beta-lactamase inhibito 76.3 50 0.0017 30.8 18.4 171 89-283 76-246 (282)
354 2wg3_C Hedgehog-interacting pr 72.8 31 0.0011 35.0 12.2 100 119-218 15-157 (463)
355 3q6k_A 43.2 kDa salivary prote 71.4 80 0.0027 30.9 19.3 89 140-230 124-252 (381)
356 3qhy_B Beta-lactamase inhibito 70.7 68 0.0023 29.8 15.9 169 93-284 40-208 (282)
357 3q6k_A 43.2 kDa salivary prote 70.5 84 0.0029 30.8 22.3 133 97-231 124-306 (381)
358 3s6n_2 SurviVal of motor neuro 70.0 9.6 0.00033 35.5 6.9 60 495-557 180-239 (280)
359 3tj1_A RNA polymerase I-specif 66.1 12 0.00042 39.3 7.4 30 492-521 136-170 (649)
360 3tj1_A RNA polymerase I-specif 62.4 11 0.00036 39.8 6.1 15 504-518 171-185 (649)
361 1k8k_G P16, ARP2/3 complex 16 56.0 22 0.00075 29.4 5.7 53 484-537 81-135 (151)
362 3dwl_G Actin-related protein 2 55.6 19 0.00065 29.8 5.3 55 484-539 82-138 (152)
363 2wg3_C Hedgehog-interacting pr 55.3 1.8E+02 0.0061 29.3 24.6 27 9-35 17-44 (463)
364 3uc1_A DNA gyrase subunit A; D 55.2 1.5E+02 0.005 28.3 22.9 190 86-284 53-280 (327)
365 4fp9_B Mterf domain-containing 55.1 2.5 8.6E-05 40.8 0.0 26 490-515 162-193 (335)
366 3b7f_A Glycosyl hydrolase, BNR 54.9 1.6E+02 0.0054 28.7 15.5 53 86-139 22-77 (394)
367 4fhn_B Nucleoporin NUP120; pro 53.2 13 0.00043 43.1 5.4 36 9-44 241-276 (1139)
368 4a9v_A PHOX; hydrolase, beta-p 52.9 49 0.0017 34.4 9.0 60 161-220 477-551 (592)
369 3zwu_A Alkaline phosphatase PH 50.3 65 0.0022 33.7 9.8 17 119-135 477-493 (592)
370 4a9v_A PHOX; hydrolase, beta-p 48.8 76 0.0026 32.9 9.7 61 118-178 476-549 (592)
371 3zwu_A Alkaline phosphatase PH 48.1 43 0.0015 35.1 8.0 57 162-218 478-549 (592)
372 3kci_A Probable E3 ubiquitin-p 40.6 2.6E+02 0.009 27.1 23.1 193 86-287 62-297 (389)
373 3f7f_A Nucleoporin NUP120; nuc 39.1 43 0.0015 35.8 6.3 36 120-157 224-259 (729)
374 1ybk_A Tetrabrachion; right ha 37.2 56 0.0019 19.8 3.9 32 551-582 11-43 (52)
375 3f7f_A Nucleoporin NUP120; nuc 36.1 33 0.0011 36.7 4.8 30 15-44 229-258 (729)
376 2l9b_A MRNA 3'-END-processing 35.6 22 0.00074 27.4 2.4 35 491-525 38-73 (109)
377 4aco_A Centromere DNA-binding 31.0 10 0.00035 40.3 0.0 15 550-564 619-633 (956)
378 4hvt_A Ritya.17583.B, post-pro 30.2 5.4E+02 0.018 27.5 19.1 188 87-285 143-383 (711)
379 2zd7_A VPS75, vacuolar protein 27.3 16 0.00053 33.9 0.5 8 352-359 104-111 (264)
380 4hvt_A Ritya.17583.B, post-pro 25.5 6.4E+02 0.022 26.9 25.4 29 12-40 136-169 (711)
381 3mez_B Mannose-specific lectin 23.3 2.5E+02 0.0087 21.5 10.9 81 86-176 24-104 (113)
382 1zi0_A DNA gyrase subunit A; b 21.5 5E+02 0.017 24.2 25.5 189 86-283 53-277 (307)
383 1q47_A Semaphorin 3A; beta pro 20.3 2E+02 0.0067 29.3 7.2 58 86-143 421-487 (495)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-40 Score=344.13 Aligned_cols=280 Identities=15% Similarity=0.247 Sum_probs=241.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++.+||+|+.||+|+|||+.+++....+.+|...+. ++.|.+.
T Consensus 108 ~~~V--~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~------------------~v~~~~~------ 161 (410)
T 1vyh_C 108 RSPV--TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ------------------DISFDHS------ 161 (410)
T ss_dssp SSCE--EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE------------------EEEECTT------
T ss_pred CCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE------------------EEEEcCC------
Confidence 4678 5669999999999999999999999999999988887665554 4455432
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|+.||.|++||+.+++++..+ .+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|
T Consensus 162 ---~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v 237 (410)
T 1vyh_C 162 ---GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 237 (410)
T ss_dssp ---SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ---CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE
Confidence 778999999999999999998887555 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeC--------------------CcEEEEEeeC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--------------------GKYVLSSAVG 220 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~--------------------~~~l~~~~~~ 220 (630)
.++.|+|++.++++++ ++|++||+.++++...+.+|...|.+++|+|+ +.+|++++ .
T Consensus 238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-~ 316 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-R 316 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-T
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-C
Confidence 9999999999999998 89999999999999999999999999999996 56788877 7
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeecc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (630)
|+.|++||+.++.. ...+..+...+..+.|+ |+|.+|++|+.||.|++||+.+++.+
T Consensus 317 D~~i~iwd~~~~~~-----~~~~~~h~~~v~~v~~~-----~~g~~l~s~s~D~~i~vwd~~~~~~~------------- 373 (410)
T 1vyh_C 317 DKTIKMWDVSTGMC-----LMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCM------------- 373 (410)
T ss_dssp TSEEEEEETTTTEE-----EEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCC-------------
T ss_pred CCeEEEEECCCCce-----EEEEECCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCceE-------------
Confidence 99999999998763 33333344455666776 99999999999999999998654321
Q ss_pred CCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..+.+|...|.+++|+|++.+| +|||.|+++++|+.
T Consensus 374 ------------------------------------------~~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 374 ------------------------------------------KTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC 409 (410)
T ss_dssp ------------------------------------------EEEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC-
T ss_pred ------------------------------------------EEEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeC
Confidence 1234788899999999999999 99999999999985
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-39 Score=330.49 Aligned_cols=281 Identities=14% Similarity=0.177 Sum_probs=237.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.++..+..+..|...+. +++|.+.
T Consensus 55 ~~~v--~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~------------------~~~~s~~------ 108 (340)
T 1got_B 55 LAKI--YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM------------------TCAYAPS------ 108 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE------------------EEEECTT------
T ss_pred CCce--EEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE------------------EEEECCC------
Confidence 4678 5569999999999999999999999999999888876655444 4455443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+.+|++|+.++.|++|++.++. .......+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.+|.
T Consensus 109 ---~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~ 184 (340)
T 1got_B 109 ---GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp ---SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ---CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence 7889999999999999998763 22233458999999999998774 8899999999999999999999999999
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
..|.+++|+|++.++++++ +.|++||++++.++..+.+|...|++++|+|++++|++++ .|+.|++||++.++..
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~-- 261 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL-- 261 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE--
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEE--
Confidence 9999999999999999998 8999999999999999999999999999999999999988 6999999999887633
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
..+........+..+.|+ |+|.+|++|+.||.|++||..+++.+
T Consensus 262 -~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~------------------------------ 305 (340)
T 1got_B 262 -MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRA------------------------------ 305 (340)
T ss_dssp -EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEE------------------------------
T ss_pred -EEEccCCcccceEEEEEC-----CCCCEEEEECCCCeEEEEEcccCcEe------------------------------
Confidence 222222222345667777 99999999999999999997554321
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
..+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus 306 -------------------------~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd 340 (340)
T 1got_B 306 -------------------------GVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340 (340)
T ss_dssp -------------------------EEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred -------------------------eEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence 1234788899999999999999 9999999999996
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.6e-39 Score=354.24 Aligned_cols=345 Identities=17% Similarity=0.192 Sum_probs=264.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEeccccccccccccccccc--------------------
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLE-------------------- 60 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~-------------------- 60 (630)
..+| .+++|+|+|++||+|+.||+|+|||+.++. ....+.+|...+..+.|+|+-.
T Consensus 59 ~~~v--~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 59 SHQT--TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred CCce--EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence 4567 556999999999999999999999987543 4567888888888888887610
Q ss_pred -------ccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE
Q 006808 61 -------REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY 133 (630)
Q Consensus 61 -------~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 133 (630)
.+| ...+.+++|.|.. ...|++|+.|+.|++||..+++....+ .+|...|.+++|+|+|++|+
T Consensus 137 ~~~~~~l~gh-~~~v~~v~f~p~~--------~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 137 GTSNGNLTGQ-ARAMNSVDFKPSR--------PFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp CCBCBCCCCC-SSCEEEEEECSSS--------SCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEEE
T ss_pred CCCcceecCC-CCCceEEEECCCC--------CeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCEEE
Confidence 011 1245566666542 346999999999999999988877555 58999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEEee-------cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceee-----------
Q 006808 134 SAGADGMVCEIDPLTGSLLGKFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ----------- 193 (630)
Q Consensus 134 s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~----------- 193 (630)
+++.|++|++||+.+++++..+. +|...|.+++|+|+|++|++++ ++|++||+.+++++.
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 99999999999999999988884 6899999999999999999998 899999998876543
Q ss_pred --------------------------------EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce---
Q 006808 194 --------------------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--- 238 (630)
Q Consensus 194 --------------------------------~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~--- 238 (630)
.+.+|...|++++|+|+|++|++++ .|+.|++||+.++......
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~~ 365 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDV 365 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSCS
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeecccC
Confidence 3357889999999999999999988 6999999999875421000
Q ss_pred ------ee--------e--------------------------eec---------C------------------------
Q 006808 239 ------CV--------L--------------------------AME---------H------------------------ 245 (630)
Q Consensus 239 ------~~--------~--------------------------~~~---------~------------------------ 245 (630)
.+ . .+. .
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 00 0 000 0
Q ss_pred -CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc--c--cccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 246 -PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE--L--RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 246 -~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
....+.++.|+ |+|++|++|+.||.|++||+.++.. + ..+......+. |+|+++ .+++++.|
T Consensus 446 ~~~~~v~~va~s-----pdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~----fspdg~----~las~s~d 512 (611)
T 1nr0_A 446 PISYNSSCVALS-----NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA----FSNNGA----FLVATDQS 512 (611)
T ss_dssp ECSSCEEEEEEC-----TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEE----ECTTSS----EEEEEETT
T ss_pred ecCCCceEEEEe-----CCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEE----ECCCCC----EEEEEcCC
Confidence 00112344555 9999999999999999999876532 1 12333333333 889988 89999998
Q ss_pred ccccCCceeEEEEEcCccCceeeE--EeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 321 DIVKPASVHTFVAYGLLLKPSFQK--ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
+.+++|+.. .. ...... ..+|...|.+++|+|||++| +|||.|+++++|++..
T Consensus 513 ~~v~~w~~~-----~~--~~~~~~~~~~~H~~~V~~v~fspdg~~l-asgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 513 RKVIPYSVA-----NN--FELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMNK 567 (611)
T ss_dssp SCEEEEEGG-----GT--TEESCCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTC
T ss_pred CCEEEEEcC-----CC--CceeeeeeeeecccceeEEEECCCCCEE-EEEECCCcEEEEECCC
Confidence 877664421 10 111111 23599999999999999999 9999999999999864
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.8e-39 Score=325.21 Aligned_cols=282 Identities=15% Similarity=0.194 Sum_probs=235.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||..++.....+..+...+..+.|+|+
T Consensus 64 ~~~V--~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~------------------------ 117 (354)
T 2pbi_B 64 GNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS------------------------ 117 (354)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT------------------------
T ss_pred CCeE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC------------------------
Confidence 4678 66699999999999999999999999999988887765554444444444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCe-----eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQ-----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+..+++|+.|+.+++|++.... .......+|...|.+++|+|++..|++++.|++|++||+.+++++..+.+
T Consensus 118 ---g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~ 194 (354)
T 2pbi_B 118 ---GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194 (354)
T ss_dssp ---SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ---CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence 7889999999999999986532 11122246999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcc--CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 158 STKGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 158 ~~~~v~~l~~~p--~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|...|.+++|+| ++.+|++|+ |.|++||+++++++..+.+|...|++++|+|++.+|++++ .|++|++||++...
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRADR 273 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCCCc
Confidence 999999999988 568999988 8999999999999999999999999999999999999988 69999999998875
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
.. ..+........+..+.|+ |++.+|++|+.||.|++||+.+++.+
T Consensus 274 ~~---~~~~~~~~~~~~~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~-------------------------- 319 (354)
T 2pbi_B 274 EV---AIYSKESIIFGASSVDFS-----LSGRLLFAGYNDYTINVWDVLKGSRV-------------------------- 319 (354)
T ss_dssp EE---EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTCSEE--------------------------
T ss_pred EE---EEEcCCCcccceeEEEEe-----CCCCEEEEEECCCcEEEEECCCCceE--------------------------
Confidence 33 222222222345566676 99999999999999999998655321
Q ss_pred hhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
..+.+|...|.+++|+|||.+| ++|+.|+++++|+
T Consensus 320 -----------------------------~~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 320 -----------------------------SILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA 354 (354)
T ss_dssp -----------------------------EEECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred -----------------------------EEEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence 1233788899999999999999 9999999999995
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=320.33 Aligned_cols=280 Identities=13% Similarity=0.159 Sum_probs=235.6
Q ss_pred CcccceeEeEECCC----CCEEEEeeCCCcEEEEECCCCcEE--EEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+|+ +.+||+|+.|++|+||++.++... ..+.+|... +.++.|.+.
T Consensus 32 ~~~V--~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~------------------v~~~~~~~~ 91 (321)
T 3ow8_A 32 DDAI--WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG------------------VVSVDISHT 91 (321)
T ss_dssp SSCE--EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------------EEEEEECSS
T ss_pred CCcE--EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCC------------------EEEEEECCC
Confidence 4678 55699985 679999999999999999877543 345555443 445555543
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+.++++++.||.|++||+.+++.+..+. .|...+.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 92 ---------~~~l~s~s~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 92 ---------LPIAASSSLDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred ---------CCEEEEEeCCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 6789999999999999999999886664 688889999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.+...|.+++|+|++++|++++ |.|++||+.+++.+..+.+|..+|++++|+|++++|++++ .|+.|++||+..+..
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHANL 240 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCCE
T ss_pred CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcce
Confidence 9999999999999999999998 8999999999999999999999999999999999999987 699999999988763
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhh
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (630)
...+..+...+..+.|+ |++.+|++++.||.|+|||+.+++.+.
T Consensus 241 -----~~~~~~h~~~v~~~~~s-----p~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------- 284 (321)
T 3ow8_A 241 -----AGTLSGHASWVLNVAFC-----PDDTHFVSSSSDKSVKVWDVGTRTCVH-------------------------- 284 (321)
T ss_dssp -----EEEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEE--------------------------
T ss_pred -----eEEEcCCCCceEEEEEC-----CCCCEEEEEeCCCcEEEEeCCCCEEEE--------------------------
Confidence 23344444455667776 999999999999999999986654321
Q ss_pred hhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
++.+|...|.+++|+|+|.+| ++++.|+.+++|+.
T Consensus 285 -----------------------------~~~~h~~~v~~v~~s~~g~~l-~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 285 -----------------------------TFFDHQDQVWGVKYNGNGSKI-VSVGDDQEIHIYDC 319 (321)
T ss_dssp -----------------------------EECCCSSCEEEEEECTTSSEE-EEEETTCCEEEEEC
T ss_pred -----------------------------EEcCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEeC
Confidence 223677789999999999999 99999999999986
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-38 Score=347.97 Aligned_cols=322 Identities=16% Similarity=0.181 Sum_probs=254.1
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+|++. +|++|+.|++|++||..++++...+.+|...+.++.|+|+
T Consensus 147 ~~~v--~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd----------------------- 201 (611)
T 1nr0_A 147 ARAM--NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD----------------------- 201 (611)
T ss_dssp SSCE--EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred CCCc--eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC-----------------------
Confidence 3567 5569999997 5999999999999999999999888877766665555554
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccC------CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~------~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~- 154 (630)
+.+|++|+.||.|++||+.+++....+.. +|.+.|.+++|+|+|++|++++.|++|++||+.+++++.+
T Consensus 202 ----g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 202 ----GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp ----SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ----CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 78899999999999999999988766633 7999999999999999999999999999999998765543
Q ss_pred ------------------------------------------eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc
Q 006808 155 ------------------------------------------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK 190 (630)
Q Consensus 155 ------------------------------------------~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~ 190 (630)
+.+|...|.+++|+|+|++|++++ ++|++||+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 346888999999999999999998 899999998765
Q ss_pred eeeEe-e-------------------------------------------------------------------------
Q 006808 191 KMQKF-S------------------------------------------------------------------------- 196 (630)
Q Consensus 191 ~~~~~-~------------------------------------------------------------------------- 196 (630)
....+ .
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 43221 0
Q ss_pred --------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEE
Q 006808 197 --------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 197 --------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
.|...+.+++|+|+|++|++++ .|+.|++|++..+... ......|.. .+..+.|+ |+|++|+
T Consensus 438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs-~D~~v~lwd~~~~~~~---~~~~~~h~~-~v~~v~fs-----pdg~~la 507 (611)
T 1nr0_A 438 SHGKLTEVPISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKTIVHPA-EITSVAFS-----NNGAFLV 507 (611)
T ss_dssp ETTEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEEEECSS-CEEEEEEC-----TTSSEEE
T ss_pred eCCceeeeecCCCceEEEEeCCCCEEEEeC-CCCeEEEEEccCCcee---eeeccCCCC-ceEEEEEC-----CCCCEEE
Confidence 1234567899999999999988 6999999999875432 122334444 45667777 9999999
Q ss_pred EEecCCcEEEEEcCC-cccccc-----cCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCcee
Q 006808 269 AISETGVCYIWYGQN-IEELRN-----TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF 342 (630)
Q Consensus 269 s~s~dg~i~iwd~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~ 342 (630)
+++.|+.|++|++.+ ++.+.. |......+. |+|+++ .|++|+.|+.+++|+. ... .....
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~----fspdg~----~lasgs~D~~v~lW~~-----~~~-~~~~~ 573 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS----WSPDNV----RLATGSLDNSVIVWNM-----NKP-SDHPI 573 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE----ECTTSS----EEEEEETTSCEEEEET-----TCT-TSCCE
T ss_pred EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE----ECCCCC----EEEEEECCCcEEEEEC-----CCc-ccccc
Confidence 999999999999987 544332 333334444 889988 9999999997776542 110 01112
Q ss_pred eEEecc-CCCcEEEeecCCcceeeccccceecccccee
Q 006808 343 QKILVN-SGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 343 ~~~~~h-~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..+.+| ...|.+++|+|||. | +|++.|+++++|++
T Consensus 574 ~~~~~h~~~~v~~v~fs~d~~-l-~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 574 IIKGAHAMSSVNSVIWLNETT-I-VSAGQDSNIKFWNV 609 (611)
T ss_dssp EETTSSTTSCEEEEEEEETTE-E-EEEETTSCEEEEEC
T ss_pred hhhccCcccCeeEEEEcCCCE-E-EEecCCCCEEEEec
Confidence 345578 89999999999999 7 99999999999987
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.1e-37 Score=306.42 Aligned_cols=243 Identities=14% Similarity=0.258 Sum_probs=205.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++| .+++|+|+|++||+|+.||+|+|||+.++..+..+..|...+..+.|+++
T Consensus 13 ~~~V--~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 66 (304)
T 2ynn_A 13 SDRV--KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR------------------------ 66 (304)
T ss_dssp CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG------------------------
T ss_pred CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC------------------------
Confidence 4678 55599999999999999999999999999999888766555544444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (630)
+++|++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++|+.|++|++||+.++ .....+.+|...
T Consensus 67 ---~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~ 142 (304)
T 2ynn_A 67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (304)
T ss_dssp ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred ---CCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence 788999999999999999999988666 479999999999999999999999999999999887 455678899999
Q ss_pred eEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEee--CCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 162 v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp--~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|.+++|+| ++.+|++|+ ++|++||+.++.....+. +|...+..+.|+| ++.+|++++ .|+.|++||+.+++
T Consensus 143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~-- 219 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS-- 219 (304)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTE--
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCc--
Confidence 99999999 678899988 899999998887666554 5668899999987 677888887 69999999999876
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
+...+..+...+..+.|+ |++.+|++|+.||.|++||..+++.
T Consensus 220 ---~~~~~~~h~~~v~~~~~~-----p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 220 ---CVATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp ---EEEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCCE
T ss_pred ---cceeeCCCCCCEEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCce
Confidence 334444445556667776 9999999999999999999876654
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=315.12 Aligned_cols=290 Identities=11% Similarity=0.084 Sum_probs=219.7
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| -+++|+|||++|++++ |+++++||.. +..+.............. .......+.+++|.+.
T Consensus 31 ~~v--~~~~fs~dG~~l~~~s-d~~~r~Wd~~----~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~d------- 93 (344)
T 4gqb_B 31 RQL--EAARYRSDGALLLGAS-SLSGRCWAGS----LWLFKDPCAAPNEGFCSA---GVQTEAGVADLTWVGE------- 93 (344)
T ss_dssp SEE--EEEEECTTSCEEEEEE-CCSSSCCCEE----EEEESSGGGTTCGGGCSE---EEEESSCEEEEEEETT-------
T ss_pred CCE--EEEEECCCCCEEEEEe-CCceEEeece----eeeeccccccCCcceeee---eeccCCCEEEEEEeCC-------
Confidence 346 4559999999999888 7789999732 122221111000000000 0011235788999873
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEE---ccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~---~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
..|++|+.||.|+|||+.+++.... ...+|...|++++|+|+|++|++|+.|++|++||+.+++++..+.+|..
T Consensus 94 ---~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 94 ---RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ---TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ---CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 4588999999999999998875432 2347999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEee--cCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 ~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.|.+++|+|++. +|++++ ++|++||+++++....+. .|...+.+++|+|++ ++|++++ .|+.|++||+++++.
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSC 249 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--C
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcE
Confidence 999999999875 677776 899999999999887764 456679999999965 4556655 799999999998763
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
+..+..+...+..+.|+ |++ .+|++|+.||.|+|||+.+++.+
T Consensus 250 -----~~~~~~h~~~v~~v~fs-----p~g~~~lasgs~D~~i~vwd~~~~~~~-------------------------- 293 (344)
T 4gqb_B 250 -----VLSSAVHSQCVTGLVFS-----PHSVPFLASLSEDCSLAVLDSSLSELF-------------------------- 293 (344)
T ss_dssp -----CEEEECCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTCCEEE--------------------------
T ss_pred -----EEEEcCCCCCEEEEEEc-----cCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------
Confidence 33444445556677776 887 57999999999999997654321
Q ss_pred hhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.+|.+.|.+++|+|+|..|.+|+|.|+++++|++.
T Consensus 294 ------------------------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 294 ------------------------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ------------------------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ------------------------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 1237888999999999998654899999999999985
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5e-38 Score=323.48 Aligned_cols=289 Identities=16% Similarity=0.234 Sum_probs=238.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.+++....+..|...+..+.|+|+
T Consensus 66 ~~~V--~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~------------------------ 119 (380)
T 3iz6_a 66 SGKV--YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN------------------------ 119 (380)
T ss_dssp SSCE--EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT------------------------
T ss_pred ccEE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC------------------------
Confidence 4678 56699999999999999999999999999999999888777766666665
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCe------eeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~------~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
+.+|++|+.|+.|++|++.+.. .......+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++++..+
T Consensus 120 ---g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 120 ---GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp ---SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred ---CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 8889999999999999997532 1224456899999999999964 56999999999999999999998887
Q ss_pred -----ecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECC-CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 156 -----RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 156 -----~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.+|...|.+++|+| ++.++++|+ ++|++||++ .++.+..+.+|...|++++|+|++++|++++ .|++|++
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~l 275 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCRL 275 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEEE
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEEE
Confidence 56888999999987 888999988 899999998 4577888999999999999999999999988 6999999
Q ss_pred EEcCCCccccceeeeeec-----CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccC
Q 006808 227 WRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (630)
||+++++.. ..+... .....+..++|+ |+|.+|++|+.||.|++||..+++.+....
T Consensus 276 wd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---------- 337 (380)
T 3iz6_a 276 FDMRTGHQL---QVYNREPDRNDNELPIVTSVAFS-----ISGRLLFAGYSNGDCYVWDTLLAEMVLNLG---------- 337 (380)
T ss_dssp EETTTTEEE---EEECCCCSSSCCSSCSCSEEEEC-----SSSSEEEEECTTSCEEEEETTTCCEEEEEC----------
T ss_pred EECCCCcEE---EEecccccccccccCceEEEEEC-----CCCCEEEEEECCCCEEEEECCCCceEEEEe----------
Confidence 999987643 122111 112235667777 999999999999999999986654322110
Q ss_pred CCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
. ...+|.+.|.+++|+|||.+| +|||.|+++++|++..
T Consensus 338 ------~-----------------------------------~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 338 ------T-----------------------------------LQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFSG 375 (380)
T ss_dssp ------C-----------------------------------SCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECCS
T ss_pred ------c-----------------------------------ccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecCC
Confidence 0 002688899999999999999 9999999999999853
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8e-37 Score=310.11 Aligned_cols=298 Identities=14% Similarity=0.162 Sum_probs=228.4
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+| .+++|+|+|++||+|+.|++|+|||+.++........ ..+|. ..+.+++|.|.
T Consensus 18 ~v--~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~--------------~~~h~-~~v~~~~~sp~-------- 72 (345)
T 3fm0_A 18 RC--WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL--------------SEGHQ-RTVRKVAWSPC-------- 72 (345)
T ss_dssp CE--EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE--------------CSSCS-SCEEEEEECTT--------
T ss_pred cE--EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee--------------ccccC-CcEEEEEECCC--------
Confidence 66 5569999999999999999999999988764322110 01332 24667777664
Q ss_pred CCcEEEEEeCCCeEEEEEccCCee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eeEEeecCCC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRASTK 160 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~ 160 (630)
+.+|++|+.|+.|++|++..+.. ....+.+|...|.+++|+|++++|++|+.|++|++||+.++. ++..+..|..
T Consensus 73 -g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 73 -GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp -SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred -CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 78899999999999999987743 223446899999999999999999999999999999998763 4667888999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc-
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ- 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~- 235 (630)
.|.+++|+|++.+|++++ +.|++||..++. +..++.+|...|++++|+|++++|++++ .|++|++|+.......
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTCTT
T ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCCCc
Confidence 999999999999999998 899999998875 4567889999999999999999999988 6999999997433211
Q ss_pred ---------cceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 236 ---------SASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 236 ---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
...++..+. .+...+..+.|+ |++..|++++.|+.|++|+.......... . ...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~l~s~~~d~~i~vw~~~~~~~~~~~--~-~~~-------- 294 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWC-----QLTGALATACGDDAIRVFQEDPNSDPQQP--T-FSL-------- 294 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEEC-----TTTCCEEEEETTSCEEEEEECTTSCTTSC--C-EEE--------
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEe-----cCCCEEEEEeCCCeEEEEEeCCCCCccee--e-EEE--------
Confidence 011222222 233445556666 89999999999999999997654321100 0 000
Q ss_pred cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc-eeeccccceeccccceecc
Q 006808 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w~~~~ 381 (630)
......+|...|.+++|+|++. +| +|||.|+++++|++..
T Consensus 295 -----------------------------------~~~~~~~h~~~V~~v~~~p~~~~~l-aS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 295 -----------------------------------TAHLHQAHSQDVNCVAWNPKEPGLL-ASCSDDGEVAFWKYQR 335 (345)
T ss_dssp -----------------------------------EEEETTSSSSCEEEEEECSSSTTEE-EEEETTSCEEEEEECC
T ss_pred -----------------------------------EeeecccccCcEeEeEEeCCCceEE-EEcCCCCcEEEEEecC
Confidence 0001237888999999999985 77 9999999999999854
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-36 Score=303.36 Aligned_cols=281 Identities=22% Similarity=0.321 Sum_probs=234.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|+||++.+++....+.+|... +.++.|.+.
T Consensus 23 ~~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~------------------v~~~~~~~~------ 76 (312)
T 4ery_A 23 TKAV--SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------------------ISDVAWSSD------ 76 (312)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------------EEEEEECTT------
T ss_pred CCcE--EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCc------------------eEEEEEcCC------
Confidence 4578 55599999999999999999999999999988888765544 445555553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|+.+|.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++++..+..|..+|
T Consensus 77 ---~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 152 (312)
T 4ery_A 77 ---SNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152 (312)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred ---CCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence 788999999999999999999887666 4799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+++|+|++.++++++ |.|++||+.+++.+..+. .+..++..++|+|++++|++++ .|+.|++||+.+++.. .
T Consensus 153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~---~ 228 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCL---K 228 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEE---E
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEE---E
Confidence 9999999999999988 899999999998877764 4567899999999999999988 6999999999987633 1
Q ss_pred eeeecCCc--eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhc
Q 006808 240 VLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 240 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
.+. .+.. ..+...+.. +++.+|++|+.||.|++||+.+++.+.
T Consensus 229 ~~~-~~~~~~~~~~~~~~~-----~~~~~l~sg~~dg~i~vwd~~~~~~~~----------------------------- 273 (312)
T 4ery_A 229 TYT-GHKNEKYCIFANFSV-----TGGKWIVSGSEDNLVYIWNLQTKEIVQ----------------------------- 273 (312)
T ss_dssp EEC-SSCCSSSCCCEEEEC-----SSSCEEEECCTTSCEEEEETTTCCEEE-----------------------------
T ss_pred EEE-ecCCceEEEEEEEEe-----CCCcEEEEECCCCEEEEEECCCchhhh-----------------------------
Confidence 111 2222 222333333 678999999999999999986553211
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeecccc--ceecccccee
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~ 379 (630)
.+.+|...|.+++|+|++.++ ++++ .|+++++|+.
T Consensus 274 --------------------------~~~~h~~~v~~~~~~p~~~~l-~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 274 --------------------------KLQGHTDVVISTACHPTENII-ASAALENDKTIKLWKS 310 (312)
T ss_dssp --------------------------EECCCSSCEEEEEECSSSSEE-EEEECTTTCCEEEEEC
T ss_pred --------------------------hhhccCCcEEEEeecCcCCce-EEEEccCCccEEEecC
Confidence 233788889999999999999 7775 6999999975
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-36 Score=304.54 Aligned_cols=286 Identities=15% Similarity=0.142 Sum_probs=230.2
Q ss_pred CcccceeEeEECCCC-CEEEEeeCCCcEEEEECCC-----CcEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+|++ ++|++|+.|++|++|++.+ +..+..+.+|...+..+.|+++
T Consensus 17 ~~~V--~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d------------------ 76 (319)
T 3frx_A 17 NGWV--TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD------------------ 76 (319)
T ss_dssp SSCE--EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT------------------
T ss_pred cceE--EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC------------------
Confidence 4678 555999965 8999999999999999864 2345566666555544444443
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|++|++||++ ++++..+.
T Consensus 77 ---------g~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~ 145 (319)
T 3frx_A 77 ---------GAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL 145 (319)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred ---------CCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence 788999999999999999999988666 4799999999999999999999999999999986 66788889
Q ss_pred cCCCCeEEEEEccC------CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 157 ASTKGISCMAVSSD------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 157 ~~~~~v~~l~~~p~------~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
+|...|.+++|+|. +..+++++ +.|++||+.+++....+.+|...|.+++|+|++++|++++ .|+.|++||
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iwd 224 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLWN 224 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEEE
T ss_pred ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEE
Confidence 99999999999985 44788887 8999999999999999999999999999999999999988 699999999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccccc
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (630)
+.+++.. ..+.++. .+..+.|+ |++.+|++++.+ .+++|++..+..+....+ ...
T Consensus 225 ~~~~~~~-----~~~~~~~-~v~~~~~s-----p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-------------~~~ 279 (319)
T 3frx_A 225 LAAKKAM-----YTLSAQD-EVFSLAFS-----PNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-------------EFA 279 (319)
T ss_dssp TTTTEEE-----EEEECCS-CEEEEEEC-----SSSSEEEEEETT-EEEEEEETTEEEEEEECC-------------CCT
T ss_pred CCCCcEE-----EEecCCC-cEEEEEEc-----CCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-------------ccc
Confidence 9987633 3333433 35566776 999999888764 599999876544322110 000
Q ss_pred chhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 309 ~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+ ....|...+.+++|+|||++| ++|+.|+.+++|++.
T Consensus 280 ------------~----------------------~~~~~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 280 ------------G----------------------YSKAAEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM 316 (319)
T ss_dssp ------------T----------------------CCGGGCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred ------------c----------------------cccCcCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence 0 001455678899999999999 999999999999985
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-36 Score=331.05 Aligned_cols=311 Identities=20% Similarity=0.264 Sum_probs=256.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|+|++|++++.|+.|++|+. +++....+.+|...+..+.|+|+
T Consensus 262 ~~~v--~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~------------------------ 314 (577)
T 2ymu_A 262 SSSV--NGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------ 314 (577)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC------------------------
Confidence 3567 45599999999999999999999996 56777777766655554444444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++++.+|.|++||....... .+ .+|...|.+++|+|+|+++++++.|+.|++||. +++.+..+..|...|
T Consensus 315 ---~~~l~t~~~d~~i~~w~~~~~~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v 388 (577)
T 2ymu_A 315 ---GQTIASASDDKTVKLWNRNGQHLQ-TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 388 (577)
T ss_dssp ---SSEEEEEETTSCEEEEETTSCEEE-EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred ---CCEEEEEeCCCeEEEEeCCCCeeE-EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe
Confidence 778999999999999998766543 33 479999999999999999999999999999995 678889999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.+++|+|++++|++++ +.|++||. +++.+..+.+|...|++++|+|++++|++++ .|+.|++|+..... .
T Consensus 389 ~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~~------~ 460 (577)
T 2ymu_A 389 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQL------L 460 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSCE------E
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCCE------E
Confidence 9999999999999987 89999995 6778889999999999999999999999988 69999999975432 2
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc---eeEEeeccCCCcccccchhhhhhhc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
..+..+...+..++|+ |++.+|++++.|+.|++||. +++.++.... ....+. |+|+++ +++++
T Consensus 461 ~~~~~~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~----~s~dg~----~l~s~ 526 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA----FSPDGQ----TIASA 526 (577)
T ss_dssp EEEECCSSCEEEEEEC-----TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE----ECTTSS----CEEEE
T ss_pred EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEE----EcCCCC----EEEEE
Confidence 2333344456677777 99999999999999999995 5555544332 223333 788887 89999
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+.|+.+++|+ .....+..+.+|.+.|.+++|+|||++| +|++.|+++++|+
T Consensus 527 ~~dg~v~lwd---------~~~~~~~~~~~h~~~v~~~~fs~dg~~l-~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 527 SDDKTVKLWN---------RNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN 577 (577)
T ss_dssp ETTSEEEEEC---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred ECcCEEEEEe---------CCCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEeC
Confidence 9988777654 1245677888999999999999999999 9999999999996
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-37 Score=314.49 Aligned_cols=284 Identities=12% Similarity=0.106 Sum_probs=215.2
Q ss_pred CcccceeEeEECCCCCEEEEeeC------CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSG------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
...| .+++|||||++||+|+. |+.|++|+..++.....+... ..+| ...+++++|.+.
T Consensus 42 ~~~V--~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-------------~~~~-~~~V~~~~~s~d 105 (357)
T 4g56_B 42 EVQI--GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-------------GVQT-EAGVTDVAWVSE 105 (357)
T ss_dssp CSEE--EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-------------EEEC-SSCEEEEEEETT
T ss_pred cCCE--EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-------------cCCC-CCCEEEEEEcCC
Confidence 3467 45599999999999997 778999988776543222100 0022 235778888874
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEE---ccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~---~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
..+++++.+|.|+|||+.+++.... ...+|...|++++|+|+|++|++|+.|++|++||+.+++++.
T Consensus 106 ----------~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 106 ----------KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK 175 (357)
T ss_dssp ----------TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ----------CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 2467889999999999998865322 224799999999999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEe--ecCCCCeEEEEEeeCCc-EEEEEeeCCCeEEEE
Q 006808 154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGK-YVLSSAVGERYIALW 227 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~-~l~~~~~~d~~i~vw 227 (630)
.+.+|...|.+++|+|++. ++++++ +.|++||+++++....+ ..|...+++++|+|++. +|++++ .|+.|++|
T Consensus 176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~w 254 (357)
T 4g56_B 176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSLV 254 (357)
T ss_dssp EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEEE
T ss_pred EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-cccceeEE
Confidence 9999999999999999875 666666 89999999998876654 35677899999999865 555555 79999999
Q ss_pred EcCCCccccceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccc
Q 006808 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKS 306 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (630)
|+++++.. ..+..+...+.++.|+ |++ .+|++|+.||.|+|||+.+++.+.
T Consensus 255 d~~~~~~~-----~~~~~~~~~v~~l~~s-----p~~~~~lasgs~D~~i~iwd~~~~~~~~------------------ 306 (357)
T 4g56_B 255 NIKNPDSA-----QTSAVHSQNITGLAYS-----YHSSPFLASISEDCTVAVLDADFSEVFR------------------ 306 (357)
T ss_dssp ESSCGGGC-----EEECCCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTSCEEEE------------------
T ss_pred ECCCCcEe-----EEEeccceeEEEEEEc-----CCCCCEEEEEeCCCEEEEEECCCCcEeE------------------
Confidence 99987643 3344444456667776 776 679999999999999986653211
Q ss_pred ccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC-Ccceeeccccceeccccceec
Q 006808 307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 307 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~~~ 380 (630)
..+|.+.|.+++|+| |+.+| +|+|.|+++++|++.
T Consensus 307 --------------------------------------~~~H~~~V~~vafsP~d~~~l-~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 307 --------------------------------------DLSHRDFVTGVAWSPLDHSKF-TTVGWDHKVLHHHLP 342 (357)
T ss_dssp --------------------------------------ECCCSSCEEEEEECSSSTTEE-EEEETTSCEEEEECC
T ss_pred --------------------------------------ECCCCCCEEEEEEeCCCCCEE-EEEcCCCeEEEEECC
Confidence 115777899999998 78998 999999999999985
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-36 Score=310.80 Aligned_cols=302 Identities=16% Similarity=0.226 Sum_probs=231.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|||++||+|+ +++++||++.++..+..+..+.....................+.+++|.+.
T Consensus 64 ~~~V--~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d------ 134 (393)
T 1erj_A 64 TSVV--CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD------ 134 (393)
T ss_dssp SSCC--CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT------
T ss_pred CCEE--EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC------
Confidence 4577 5669999999999987 689999999999998887655322110000000000111234778888775
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.+|++++.|++|++||++++++...+. +...+
T Consensus 135 ---g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v 209 (393)
T 1erj_A 135 ---GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGV 209 (393)
T ss_dssp ---SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred ---CCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCc
Confidence 778999999999999999999887555 5899999999999999999999999999999999999888877 55679
Q ss_pred EEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEe-------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 163 SCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 163 ~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+++|+| ++.+|++++ +.|++||+.++..+..+ .+|...|.+++|+|++++|++++ .|+.|++||+...
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~~~ 288 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECCCC
Confidence 9999999 899999998 89999999999887766 57999999999999999999988 6999999999765
Q ss_pred ccc-------cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 233 KKQ-------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 233 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
... ...+...+..+...+..++++ |++.+|++|+.||.|++||..+++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~~~~----------------- 346 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLL----------------- 346 (393)
T ss_dssp ------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEE-----------------
T ss_pred CCcccccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCeEEE-----------------
Confidence 321 011233333334445566666 899999999999999999986654321
Q ss_pred cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC------Ccceeeccccceecccccee
Q 006808 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ------DGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~------dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+.+|...|.+++|++ ++.+| +|||.|+++++|++
T Consensus 347 --------------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l-~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 347 --------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWKY 387 (393)
T ss_dssp --------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEEE
T ss_pred --------------------------------------EECCCCCCEEEEEecCCcCcCCCCCEE-EEECCCCcEEECcc
Confidence 2336777788888765 78888 99999999999998
Q ss_pred c
Q 006808 380 Q 380 (630)
Q Consensus 380 ~ 380 (630)
.
T Consensus 388 ~ 388 (393)
T 1erj_A 388 K 388 (393)
T ss_dssp E
T ss_pred c
Confidence 5
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4e-35 Score=297.40 Aligned_cols=292 Identities=14% Similarity=0.120 Sum_probs=222.7
Q ss_pred CcccceeEeEE-----CC-CCCEEEEeeCCCcEEEEECCCC-------cEEEEeccccccccccccccccccccccccee
Q 006808 3 SSNIRDILTSF-----SP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYT 69 (630)
Q Consensus 3 s~~V~~~~~~f-----s~-dg~~las~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 69 (630)
.++| .+++| ++ ++++||+|+.|++|+|||+.++ .....+.+|... +.
T Consensus 21 ~~~V--~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~------------------V~ 80 (343)
T 2xzm_R 21 SDWV--TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF------------------VS 80 (343)
T ss_dssp SSCE--EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSC------------------EE
T ss_pred hhhh--hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCc------------------eE
Confidence 4678 45588 66 9999999999999999998753 334455544443 45
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
+++|.+. +.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|++|++||+..
T Consensus 81 ~~~~~~~---------~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~- 149 (343)
T 2xzm_R 81 DLALSQE---------NCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG- 149 (343)
T ss_dssp EEEECSS---------TTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-
T ss_pred EEEECCC---------CCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-
Confidence 5555543 778999999999999999999887666 47999999999999999999999999999999974
Q ss_pred ceeEEee---cCCCCeEEEEEccCC----------CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEE
Q 006808 150 SLLGKFR---ASTKGISCMAVSSDG----------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 150 ~~~~~~~---~~~~~v~~l~~~p~~----------~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 214 (630)
.....+. .|...|.+++|+|++ .++++++ +.|++|| .+++....+.+|...|.+++|+|+|++|
T Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYI 228 (343)
T ss_dssp CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEE
Confidence 3333333 677899999999987 6888887 8999999 4566777889999999999999999999
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
++++ .|+.|++||+...... ...+.+.. .+..+.|+ |++.++++ +.|+.|++|++.++......
T Consensus 229 ~sgs-~dg~v~iwd~~~~~~~----~~~~~~~~-~v~~v~~s-----p~~~~la~-~~d~~v~iw~~~~~~~~~~~---- 292 (343)
T 2xzm_R 229 ATGG-KDKKLLIWDILNLTYP----QREFDAGS-TINQIAFN-----PKLQWVAV-GTDQGVKIFNLMTQSKAPVC---- 292 (343)
T ss_dssp EEEE-TTCEEEEEESSCCSSC----SEEEECSS-CEEEEEEC-----SSSCEEEE-EESSCEEEEESSSCCSCSEE----
T ss_pred EEEc-CCCeEEEEECCCCccc----ceeecCCC-cEEEEEEC-----CCCCEEEE-ECCCCEEEEEeCCCCCCceE----
Confidence 9988 6999999999544322 11222222 35667776 88887764 56788999999776543210
Q ss_pred EEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecc
Q 006808 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (630)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (630)
. +... .+. ......+|...|.+++|+|+|.+| ++|+.|+++
T Consensus 293 -~------~~~~------~~~-------------------------~~~~~~~~~~~v~~~~~sp~g~~l-~sg~~Dg~v 333 (343)
T 2xzm_R 293 -T------IEAE------PIT-------------------------KAEGQKGKNPQCTSLAWNALGKKL-FAGFTDGVI 333 (343)
T ss_dssp -E------CCCC------SGG-------------------------GBTTBCCSCCCEEEEEECSSSCCE-EEEETTSEE
T ss_pred -E------eecC------cch-------------------------hhhhhcCCCCceEEEEECCCCCeE-EEecCCceE
Confidence 0 0000 000 000122677889999999999999 999999999
Q ss_pred ccceecc
Q 006808 375 RGRYVQN 381 (630)
Q Consensus 375 ~~w~~~~ 381 (630)
++|++..
T Consensus 334 ~~w~~~~ 340 (343)
T 2xzm_R 334 RTFSFET 340 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999853
No 17
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-36 Score=310.97 Aligned_cols=335 Identities=15% Similarity=0.244 Sum_probs=253.2
Q ss_pred cccceeEeEECCCCC-EEEEeeCCCcEEEEEC----CCCc------EEEEecccccccccccccccccccccccceeeEE
Q 006808 4 SNIRDILTSFSPALD-YFAICSGDARIKIWDT----LKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMK 72 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~----~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 72 (630)
++| .+++|+|+|+ +||+|+.||.|+||++ .+++ ....+........ ..++....+++++
T Consensus 46 ~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 46 DNI--VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA--------SSGKTTNQVTCLA 115 (425)
T ss_dssp SCC--SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--------------CBCEEEEE
T ss_pred Cce--EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc--------cccCCCCceEEEE
Confidence 678 5569999999 9999999999999999 8887 3433332100000 0011244788888
Q ss_pred ecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 006808 73 WLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 73 w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~ 152 (630)
|.+. +.+|++|+.+|.|++|| .++..+..+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 116 ~s~~---------~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 116 WSHD---------GNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp ECTT---------SSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EcCC---------CCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 8874 77899999999999999 556665455 479999999999999999999999999999999999999
Q ss_pred EEeecCCCC---------------eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 153 GKFRASTKG---------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 153 ~~~~~~~~~---------------v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
..+..+... +.+++|+|++.+++.+. |.|++||+.+++.+..+.+|...|.+++|+|++++|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 998877766 99999999876444444 89999999999999999999999999999999999999
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc---e
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---T 293 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~ 293 (630)
++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++ ++++++.||.|++||+.+++.+..... .
T Consensus 265 ~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 265 AS-DDGTLRIWHGGNGNSQ-----NCFYGHSQSIVSASWV-----GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp EE-TTSCEEEECSSSBSCS-----EEECCCSSCEEEEEEE-----TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred Ec-CCCEEEEEECCCCccc-----eEecCCCccEEEEEEC-----CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence 88 6999999999887633 2333334445566666 888 999999999999999998877655433 2
Q ss_pred eEEeeccCCCcccccchhhhhhhccccccccCCceeEEE-----EEc-------CccCceeeEEeccCC--CcEEEeecC
Q 006808 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV-----AYG-------LLLKPSFQKILVNSG--EDINLNCSQ 359 (630)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-----~~g-------~~~~~~~~~~~~h~~--~v~~~~~s~ 359 (630)
...+. ++|+++ .+++++.++.+++|+..-.. .++ ....+.+..+.+|.. .|.+++|+|
T Consensus 333 i~~~~----~s~~~~----~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 333 IFAGR----ISQDGQ----KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp EEEEE----ECTTSS----EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred EEEEE----EcCCCC----EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence 22222 677776 89999988876665421000 000 001125677888976 999999999
Q ss_pred Ccceeeccccceeccccceec
Q 006808 360 DGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 360 dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+|.+| ++++.|+.+++|++.
T Consensus 405 ~~~~l-~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 AGNKI-SVAYSLQEGSVVAIP 424 (425)
T ss_dssp TSSEE-EEEESSSCCEEEECC
T ss_pred CCceE-EEEecCceEEEEeec
Confidence 99999 999999999999874
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=295.00 Aligned_cols=287 Identities=14% Similarity=0.158 Sum_probs=211.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEe-cccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| .+++|+|+ +||+|+.|++|++||+.++. ....+ .+ +| ...+.+++|.|.
T Consensus 14 ~~~v--~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~----------------~h-~~~v~~v~~sp~--- 69 (330)
T 2hes_X 14 KEKI--WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDET----------------AH-KKAIRSVAWRPH--- 69 (330)
T ss_dssp SSCE--EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTT----------------CC-CSCEEEEEECTT---
T ss_pred CCce--eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecC----------------Cc-cCCEEEEEECCC---
Confidence 4678 55599988 99999999999999998753 34434 21 12 224666777664
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCC-------eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC----
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---- 148 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~-------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~---- 148 (630)
+.+|++|+.|+.|++|++... ... ..+.+|...|.+++|+|+|++|++|+.|++|++||+..
T Consensus 70 ------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 70 ------TSLLAAGSFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp ------SSEEEEEETTSCEEEEEC-------CCCEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred ------CCEEEEEeCCCcEEEEEcccCcCccccceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 778999999999999998532 333 33468999999999999999999999999999999943
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC--ceeeEeecCCCCeEEEEEeeC--CcEEEEEeeCCC
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGER 222 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~--~~~l~~~~~~d~ 222 (630)
.+++..+.+|...|.+++|+|++.+|++++ ++|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ .|+
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~D~ 221 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-DDS 221 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-TTS
T ss_pred eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-CCC
Confidence 256778899999999999999999999998 89999998776 578889999999999999998 66788877 799
Q ss_pred eEEEEEcCCCccc---cceeeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee
Q 006808 223 YIALWRTDGVKKQ---SASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (630)
Q Consensus 223 ~i~vwd~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (630)
+|++|++..+... ...+...+.. +...+..+.|+ ++ .+|++++.||.|+||+..++.. ....
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~-~~l~s~~~dg~v~iw~~~~~~~--------~~~~ 287 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-----FN-GLIASVGADGVLAVYEEVDGEW--------KVFA 287 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-----TT-SCEEEEETTSCEEEEEEETTEE--------EEEE
T ss_pred eEEEEEecCCCccccceeEEeeecccccccceEEEEEc-----CC-CEEEEEeCCCEEEEEEcCCCce--------EEEe
Confidence 9999998764211 0012222221 33445566665 55 4899999999999999743311 0000
Q ss_pred ccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCC-CcEEEeecC--Ccceeeccccceeccc
Q 006808 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQ--DGVLLPMSQSLLKSKR 375 (630)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~~~~s~--dg~~l~~s~s~d~~~~ 375 (630)
....+|.. .|.+++|+| ++.+| +|||.|++++
T Consensus 288 --------------------------------------------~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg~v~ 322 (330)
T 2hes_X 288 --------------------------------------------KRALCHGVYEINVVKWLELNGKTIL-ATGGDDGIVN 322 (330)
T ss_dssp --------------------------------------------EESCTTTTSCEEEEEEC-----CCE-EEEETTSEEE
T ss_pred --------------------------------------------ccccccccceEEEEEEecCCCceEE-EEecCCCcEE
Confidence 00125655 789999999 78888 9999999999
Q ss_pred cceec
Q 006808 376 GRYVQ 380 (630)
Q Consensus 376 ~w~~~ 380 (630)
+|++.
T Consensus 323 ~W~~~ 327 (330)
T 2hes_X 323 FWSLE 327 (330)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 99975
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.7e-35 Score=317.20 Aligned_cols=313 Identities=20% Similarity=0.246 Sum_probs=252.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++|++++.|+.|++||. +++.+..+.+|...+..+.|+|+
T Consensus 221 ~~~v--~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d------------------------ 273 (577)
T 2ymu_A 221 SSSV--RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPD------------------------ 273 (577)
T ss_dssp SSCE--EEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCC------------------------
Confidence 4567 45599999999999999999999996 57777777766555544444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++++.++.|++|+... +....+ .+|...|.+++|+|+++.|++++.|+.|++||+. ++.+..+..|...+
T Consensus 274 ---~~~l~~~~~d~~i~~w~~~~-~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v 347 (577)
T 2ymu_A 274 ---GQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSV 347 (577)
T ss_dssp ---SSEEEEEETTSCEEEEETTS-CEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred ---CCEEEEEeCCCEEEEEeCCC-cEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCE
Confidence 77899999999999999754 444343 5899999999999999999999999999999975 55667788899999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.+++|+|++++|++++ +.|++||. +++.+..+.+|...|++++|+|++++|++++ .|+.|++|+..... .
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~~------~ 419 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQL------L 419 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCCE------E
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCCE------E
Confidence 9999999999999988 89999995 6778889999999999999999999999988 69999999964322 2
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc---cCceeEEeeccCCCcccccchhhhhhhc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN---TKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
..+..+...+..+.|+ |++.+|++++.|+.|++||.. ++.+.. +......+. |+|+++ .++++
T Consensus 420 ~~~~~~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~----~spd~~----~las~ 485 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFS-----PDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA----FSPDGQ----TIASA 485 (577)
T ss_dssp EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEE----ECTTSC----EEEEE
T ss_pred EEecCCCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEE----EcCCCC----EEEEE
Confidence 2333334445566776 999999999999999999964 444433 222333333 788887 89999
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+.|+.+++|+ .....+..+.+|...|.+++|+|||++| ++++.|+.+++|+..
T Consensus 486 ~~d~~i~iw~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 486 SDDKTVKLWN---------RNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN 538 (577)
T ss_dssp ETTSEEEEEE---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT
T ss_pred eCCCEEEEEc---------CCCCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEEEEeCC
Confidence 9988766543 2245567888999999999999999999 999999999999974
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=288.59 Aligned_cols=238 Identities=21% Similarity=0.291 Sum_probs=208.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+| .+++|+|++.++++|+.|++|++||+.+++.+..+..+...+..+.|+|+
T Consensus 81 ~~v--~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd------------------------- 133 (321)
T 3ow8_A 81 LGV--VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD------------------------- 133 (321)
T ss_dssp SCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT-------------------------
T ss_pred CCE--EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC-------------------------
Confidence 467 56699999999999999999999999999999888765554444444443
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.+|++|+.+|.|++|++.+++....+. .|...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|..+|.
T Consensus 134 --g~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 210 (321)
T 3ow8_A 134 --SQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210 (321)
T ss_dssp --SSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCC
T ss_pred --CCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCcee
Confidence 7889999999999999999998876654 6888999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+++|+|++++|++++ +.|++||++++.....+.+|...|.+++|+|++++|++++ .|+.|++||+.+++. +.
T Consensus 211 ~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~~-----~~ 284 (321)
T 3ow8_A 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRTC-----VH 284 (321)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEE-----EE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCEE-----EE
Confidence 999999999999998 8999999999999999999999999999999999999988 699999999988763 33
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.+..+...+..+.|+ |++.+|++++.||.|+|||..
T Consensus 285 ~~~~h~~~v~~v~~s-----~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 285 TFFDHQDQVWGVKYN-----GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECCCSSCEEEEEEC-----TTSSEEEEEETTCCEEEEECC
T ss_pred EEcCCCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEeCC
Confidence 444444455666776 999999999999999999963
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-34 Score=291.63 Aligned_cols=318 Identities=11% Similarity=0.072 Sum_probs=247.0
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.++| .+++|+|||++++++..++.+.+|............+|... ++++.|.+.
T Consensus 8 ~~~~v--~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------------------v~~~~~~~~----- 62 (337)
T 1gxr_A 8 GSKPA--YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEV------------------VCAVTISNP----- 62 (337)
T ss_dssp EEEEC--CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSC------------------CCEEEECSS-----
T ss_pred cCCce--eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCc------------------eEEEEEecC-----
Confidence 35678 55599999999999888777777765544443333344443 455555543
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEcc----CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEe
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKF 155 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~----~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~ 155 (630)
+.++++++ +|.|++|++.++.....+. .+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+
T Consensus 63 ----~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 137 (337)
T 1gxr_A 63 ----TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp ----SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred ----CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence 77788888 9999999998775322221 2688999999999999999999999999999999887 56678
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..|...|.+++|+|+++++++++ |.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++||+.+++
T Consensus 138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGR 216 (337)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTE
T ss_pred ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCc
Confidence 88889999999999999999987 8999999999999999999999999999999999999988 69999999999876
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc--cCceeEEeeccCCCcccccchh
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--TKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
.. ....+... +..+.++ |++.+|++++.+|.|++||+.+++.... +......+. ++++++
T Consensus 217 ~~-----~~~~~~~~-v~~~~~s-----~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~--- 278 (337)
T 1gxr_A 217 QL-----QQHDFTSQ-IFSLGYC-----PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK----FAYCGK--- 278 (337)
T ss_dssp EE-----EEEECSSC-EEEEEEC-----TTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEE----ECTTSS---
T ss_pred eE-----eeecCCCc-eEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEE----ECCCCC---
Confidence 43 23334333 4556666 8999999999999999999988765332 222222333 677776
Q ss_pred hhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+++++.++.+++++. ...... ....|...+.+++|+|+|.+| ++++.|+.+++|++
T Consensus 279 -~l~~~~~dg~i~~~~~--------~~~~~~-~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 279 -WFVSTGKDNLLNAWRT--------PYGASI-FQSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp -EEEEEETTSEEEEEET--------TTCCEE-EEEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred -EEEEecCCCcEEEEEC--------CCCeEE-EEecCCCcEEEEEECCCCCEE-EEecCCCeEEEEEE
Confidence 8889988876655431 111111 234688899999999999999 99999999999986
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-36 Score=312.00 Aligned_cols=332 Identities=11% Similarity=0.100 Sum_probs=246.8
Q ss_pred ccceeEeEECCCCC-EEEEe----------eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEe
Q 006808 5 NIRDILTSFSPALD-YFAIC----------SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 5 ~V~~~~~~fs~dg~-~las~----------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
+| .+++|+|+|+ +||+| +.|+.|+|||+.++.....+. ...| ...+.+++|
T Consensus 14 ~v--~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~---------------~~~~-~~~v~~~~~ 75 (416)
T 2pm9_A 14 RT--ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA---------------SLQV-DSKFNDLDW 75 (416)
T ss_dssp ES--CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC---------------CCCC-SSCEEEEEE
T ss_pred hc--ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE---------------EEec-CCceEEEEE
Confidence 56 4559999997 99999 889999999998875321110 0012 335778888
Q ss_pred cccccccccccCCcEEEEEeCCCeEEEEEccC----CeeeEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCC
Q 006808 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~----~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~ 148 (630)
.+. +.+|++|+.+|.|++|++.+ ...+ ....+|...|.+++|+|+ +++|++++.|+.|++||+.+
T Consensus 76 s~~---------~~~l~~~~~dg~v~vw~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 76 SHN---------NKIIAGALDNGSLELYSTNEANNAINSM-ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CSS---------SSCEEEEESSSCEEEECCSSTTSCCCEE-EECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred CCC---------CCeEEEEccCCeEEEeecccccccccch-hhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 664 67899999999999999988 2344 444579999999999998 88999999999999999998
Q ss_pred Cc------eeEE---eecCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecC------CCCeEEEEEeeC
Q 006808 149 GS------LLGK---FRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDN 210 (630)
Q Consensus 149 ~~------~~~~---~~~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~ 210 (630)
++ .... +..|...|.+++|+|+ +.++++++ +.|++||+++++.+..+..| ...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (416)
T 2pm9_A 146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225 (416)
T ss_dssp TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC
Confidence 86 3322 3568889999999998 78888887 89999999999998888766 789999999999
Q ss_pred C-cEEEEEeeCCC---eEEEEEcCCCccccceeeeeec-CCceeeeeEEecCCccCC-CCCEEEEEecCCcEEEEEcCCc
Q 006808 211 G-KYVLSSAVGER---YIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 211 ~-~~l~~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+ .++++++ .|+ .|++||+++.... ...+. .+...+..+.|+ | ++.+|++++.||.|++||+.++
T Consensus 226 ~~~~l~~~~-~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 226 NSTRVATAT-GSDNDPSILIWDLRNANTP----LQTLNQGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp CTTEEEEEE-CCSSSCCCCEEETTSTTSC----SBCCCSCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEECSSSC
T ss_pred CCCEEEEEE-CCCCCceEEEEeCCCCCCC----cEEeecCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEeeCCCC
Confidence 8 4666666 688 9999999986422 22333 233445566665 7 8999999999999999999998
Q ss_pred ccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCc---------------------------
Q 006808 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL--------------------------- 337 (630)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~--------------------------- 337 (630)
+.+.........+.+ ..++|++. ..+++++.|+.+++|+..-.......
T Consensus 296 ~~~~~~~~~~~~v~~-~~~s~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (416)
T 2pm9_A 296 EQLSQFPARGNWCFK-TKFAPEAP---DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP 371 (416)
T ss_dssp CEEEEEECSSSCCCC-EEECTTCT---TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred ccceeecCCCCceEE-EEECCCCC---CEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence 876654433222221 12677762 18899999887776543211000000
Q ss_pred -cCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 338 -LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 338 -~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
...+ .....|...+.+++|+|||++| ++++.|+++++|++.
T Consensus 372 ~~~~~-~~~~~~~~~~~~~~~s~dg~~l-a~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 372 SVFHL-QAPTWYGEPSPAAHWAFGGKLV-QITPDGKGVSITNPK 413 (416)
T ss_dssp CSSCC-CCCSTTCCCSCCCEEETTTEEE-CBCTTSSCBCCBCCC
T ss_pred ccccc-cCCccccCCccceEEeeCCeEE-EEeCCCCeEEEEEec
Confidence 0001 1122367788899999999999 999999999999984
No 23
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.6e-35 Score=307.52 Aligned_cols=319 Identities=14% Similarity=0.145 Sum_probs=242.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++|+|+|++|++|+.||.|++||+.++.....+. .+ .+.++.+.+++ +.+|
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-----------------~~---~~~~~~~~~~~--------~~~l 112 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-----------------RA---DYTAVDTAKLQ--------MRRF 112 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC-----------------SC---CEEEEEEECSS--------SCEE
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe-----------------cC---CceEEEEEecC--------CCEE
Confidence 34999999999999999999999998766543322 11 23344343333 7789
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
++|+.+|.|++||+.++.....+ .+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred EEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999999988887444 58999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeC--CeEEEEECCCCceeeEeec---CCCCeEEEE---------------------EeeCCcEEEEEeeCCCe
Q 006808 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMT---------------------FSDNGKYVLSSAVGERY 223 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~---------------------~sp~~~~l~~~~~~d~~ 223 (630)
++.+|++++ +.|++||+++++.+..+.. |...+.+++ |+|++++|++++ .|+.
T Consensus 192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~ 270 (420)
T 3vl1_A 192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGV 270 (420)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSC
T ss_pred CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCe
Confidence 999999988 8999999999998888874 344455555 467888998887 6999
Q ss_pred EEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCccc-ccccC---ceeEEee
Q 006808 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEE-LRNTK---ATKILSS 298 (630)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~---~~~~~~~ 298 (630)
|++||+++++.. .... ..+...+..+.|+ |++. +|++|+.||.|++||+.+++. +.... .......
T Consensus 271 i~i~d~~~~~~~---~~~~-~~~~~~v~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 271 ITVHNVFSKEQT---IQLP-SKFTCSCNSLTVD-----GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV 341 (420)
T ss_dssp EEEEETTTCCEE---EEEC-CTTSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred EEEEECCCCcee---EEcc-cccCCCceeEEEe-----CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence 999999887643 2222 2334455666676 8888 999999999999999988754 33221 1111111
Q ss_pred ccCCCcccccchhhhhhhccccccccCCceeEEEEEcCc------cCceeeEEeccCCCcEEEeecCCcc---eeecccc
Q 006808 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGV---LLPMSQS 369 (630)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s 369 (630)
+.++++ .+++++.|+.+++|+ ..... ....-..+..|...|.+++|+|+|. .+ ++.+
T Consensus 342 ----~~~~~~----~l~s~~~d~~v~iw~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g 407 (420)
T 3vl1_A 342 ----YFAAGA----LFVSSGFDTSIKLDI-----ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVG 407 (420)
T ss_dssp ----EEETTE----EEEEETTTEEEEEEE-----ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE-EEEE
T ss_pred ----EeCCCC----EEEEecCCccEEEEe-----ccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE-EEEc
Confidence 233444 889999988766654 22110 0112223557899999999999999 56 4444
Q ss_pred ceeccccceecc
Q 006808 370 LLKSKRGRYVQN 381 (630)
Q Consensus 370 ~d~~~~~w~~~~ 381 (630)
.++.+++|++++
T Consensus 408 ~~g~~~~~~~~~ 419 (420)
T 3vl1_A 408 KNNFCALYNLSN 419 (420)
T ss_dssp TTTEEEEEESCC
T ss_pred CCceEEEEeccC
Confidence 588999998864
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-34 Score=297.84 Aligned_cols=238 Identities=18% Similarity=0.265 Sum_probs=208.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.+++++..+.+|...+. ++.|.|.
T Consensus 150 ~~~V--~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~------------------~v~~~p~------ 203 (410)
T 1vyh_C 150 TDSV--QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS------------------SVSIMPN------ 203 (410)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE------------------EEEECSS------
T ss_pred CCcE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE------------------EEEEeCC------
Confidence 4678 5569999999999999999999999999999888876655444 4555443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|+.||.|++||+.++.++..+ .+|...|.++.|+|+|.+|++|+.|++|++||+.++++...+..|...|
T Consensus 204 ---~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 204 ---GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred ---CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 778999999999999999999988666 4799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccC--------------------CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 163 SCMAVSSD--------------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 163 ~~l~~~p~--------------------~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
.+++|+|+ |.+|++|+ +.|++||+.++.++..+.+|...|++++|+|++++|++++ .
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~ 358 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-D 358 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-T
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-C
Confidence 99999996 66889888 8999999999999999999999999999999999999988 6
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|+.|++||+.+++.. ..+..+...+.++.|+ |++.+|++|+.||.|+||+.
T Consensus 359 D~~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~~-----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 359 DKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC-
T ss_pred CCeEEEEECCCCceE-----EEEcCCCCcEEEEEEc-----CCCCEEEEEeCCCcEEEEeC
Confidence 999999999877633 3334444456677776 99999999999999999986
No 25
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=287.18 Aligned_cols=294 Identities=14% Similarity=0.146 Sum_probs=229.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...+ .++.|.+.
T Consensus 32 ~~~v--~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v------------------~~~~~~~~------ 85 (369)
T 3zwl_B 32 ERPL--TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI------------------WSIDVDCF------ 85 (369)
T ss_dssp SSCE--EEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCE------------------EEEEECTT------
T ss_pred eceE--EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcE------------------EEEEEcCC------
Confidence 4678 556999999999999999999999999999999887665544 45555543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCc-------
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS------- 150 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~------- 150 (630)
+.+|++++.+|.|++||+.+++.+..+. |...|.+++|+|+++++++++.+ +.|++||+..+.
T Consensus 86 ---~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 86 ---TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp ---SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred ---CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 7789999999999999999999887764 88899999999999999999998 999999987653
Q ss_pred ----eeEEeecCCC--CeEEEEEccCCCEEEEeC--CeEEEEECCC-CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 151 ----LLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 151 ----~~~~~~~~~~--~v~~l~~~p~~~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
....+..+.. .+.+++|+|++++|++++ |.|++||+.+ ++.+..+..|...|.+++|+|++++|++++ .|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 239 (369)
T 3zwl_B 161 VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-RD 239 (369)
T ss_dssp ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-CC
Confidence 3444555666 899999999999999987 8999999998 788888999999999999999999999988 69
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccC
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (630)
+.|++||+.+++.. ..+.+.. .+..+.++ |++.++++++.++...+|........ ..
T Consensus 240 ~~i~v~d~~~~~~~-----~~~~~~~-~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~------- 296 (369)
T 3zwl_B 240 TNSFLVDVSTLQVL-----KKYETDC-PLNTAVIT-----PLKEFIILGGGQEAKDVTTTSANEGK-----FE------- 296 (369)
T ss_dssp SEEEEEETTTCCEE-----EEEECSS-CEEEEEEC-----SSSSEEEEEECCC------------------CE-------
T ss_pred ceEEEEECCCCcee-----eeecCCC-CceeEEec-----CCCceEEEeecCCCceEEEEecCCCc-----ce-------
Confidence 99999999987643 2333333 34555666 99999999999986555543221100 00
Q ss_pred CCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
+..+.......+..+.+|...|.+++|+|+|.+| ++++.|+.+++|++..
T Consensus 297 -----------------------------i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 297 -----------------------------ARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY-ASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -----------------------------EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEEECH
T ss_pred -----------------------------eEEEecCCCcchhheecccCcEEEEEECCCCCEE-EEEcCCCeEEEEECcc
Confidence 0011111122334556888999999999999999 9999999999999864
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.2e-33 Score=282.66 Aligned_cols=289 Identities=17% Similarity=0.202 Sum_probs=226.9
Q ss_pred CcccceeEeEECCC-CCEEEEeeCCCcEEEEECCCCc-----EEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+|+ +++|||||.||+|+|||+.+++ +...+.+|... +.++.|.+.
T Consensus 38 ~~~V--~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~------------------V~~~~~s~d 97 (340)
T 4aow_A 38 NGWV--TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF------------------VSDVVISSD 97 (340)
T ss_dssp SSCE--EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC------------------EEEEEECTT
T ss_pred cCCE--EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC------------------EEEEEECCC
Confidence 4688 55599997 6899999999999999987654 34455544443 455555543
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee-EEe
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKF 155 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~-~~~ 155 (630)
+.+|++|+.||.|++|+........... .+...+..+.+++++.+|++++.|+.+++||+...... ..+
T Consensus 98 ---------g~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 98 ---------GQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred ---------CCEEEEEcccccceEEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 7889999999999999999988775554 57788999999999999999999999999998766443 345
Q ss_pred ecCCCCeEEEEEccCC--CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 156 RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|...+.+++|++++ .++++++ +.|++||+.+++.+..+.+|..+|++++|+|++++|++++ .|+.|++||+.+
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~~ 246 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNE 246 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTT
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEecc
Confidence 6788899999999865 4566666 8999999999999999999999999999999999999988 699999999998
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchh
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
.+.. ..+.+.. .+..++++ |++. +++++.|+.|++||+.++..+...+....
T Consensus 247 ~~~~-----~~~~~~~-~v~~~~~~-----~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------- 298 (340)
T 4aow_A 247 GKHL-----YTLDGGD-IINALCFS-----PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI---------------- 298 (340)
T ss_dssp TEEE-----EEEECSS-CEEEEEEC-----SSSS-EEEEEETTEEEEEETTTTEEEEEECCC------------------
T ss_pred Ccee-----eeecCCc-eEEeeecC-----CCCc-eeeccCCCEEEEEECCCCeEEEeccccce----------------
Confidence 7633 3333433 45566665 7665 55667799999999977655433221100
Q ss_pred hhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.....+|...|.+++|+|||++| ++|+.|+.+++|++..
T Consensus 299 ------------------------------~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 299 ------------------------------STSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVTI 337 (340)
T ss_dssp -----------------------------------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEEC
T ss_pred ------------------------------eeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCCC
Confidence 00123678899999999999999 9999999999999864
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1e-33 Score=281.77 Aligned_cols=231 Identities=14% Similarity=0.079 Sum_probs=195.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+.+|++|+.||.|++||+.++..+..+. .|..+|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.++
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 103 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 7889999999999999999998876664 799999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+|+|++.+|++++ ++|++||++++ .....+.+|...|.+++|+| ++.+|++++ .|++|++||+...... ...
T Consensus 104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~---~~~ 179 (304)
T 2ynn_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPN---FTL 179 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCS---EEE
T ss_pred EEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCcc---cee
Confidence 9999999999998 89999999887 45567889999999999999 567888887 6999999999876543 222
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
...+.. .+..+.+.+ .+++.+|++|+.||.|++||+.+++.+
T Consensus 180 ~~~~~~-~v~~~~~~~---~~~~~~l~s~s~D~~i~iWd~~~~~~~---------------------------------- 221 (304)
T 2ynn_A 180 TTGQER-GVNYVDYYP---LPDKPYMITASDDLTIKIWDYQTKSCV---------------------------------- 221 (304)
T ss_dssp ECCCTT-CEEEEEECC---STTCCEEEEEETTSEEEEEETTTTEEE----------------------------------
T ss_pred ccCCcC-cEEEEEEEE---cCCCCEEEEEcCCCeEEEEeCCCCccc----------------------------------
Confidence 222323 334444431 157889999999999999998654321
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
..+.+|...|.+++|+|++.+| +||+.|+++++|+...
T Consensus 222 ---------------------~~~~~h~~~v~~~~~~p~~~~l-~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 222 ---------------------ATLEGHMSNVSFAVFHPTLPII-ISGSEDGTLKIWNSST 259 (304)
T ss_dssp ---------------------EEEECCSSCEEEEEECSSSSEE-EEEETTSCEEEEETTT
T ss_pred ---------------------eeeCCCCCCEEEEEECCCCCEE-EEEcCCCeEEEEECCC
Confidence 1334788899999999999999 9999999999999864
No 28
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-33 Score=334.67 Aligned_cols=322 Identities=14% Similarity=0.175 Sum_probs=259.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+|+
T Consensus 615 ~~~v--~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------ 668 (1249)
T 3sfz_A 615 TDAV--YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD------------------------ 668 (1249)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred cccE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecC------------------------
Confidence 4577 56699999999999999999999999999999998877665554444444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+.++++|+.+|.|++||+.+++.+..+. +|...|.+++|+| ++..+++|+.|+.|++||+.+++++..+.+|..
T Consensus 669 ---~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 669 ---DSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS
T ss_pred ---CCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC
Confidence 7889999999999999999999886664 7999999999999 556899999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-------------------------------------------
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------------------------------------------- 195 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~------------------------------------------- 195 (630)
.|.+++|+|++.++++++ |.|++||+.+++....+
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 999999999999999998 89999998776543322
Q ss_pred ------------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC
Q 006808 196 ------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (630)
Q Consensus 196 ------------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (630)
.+|...|.+++|+|+++++++++ .|+.|++|++.++.. ...+..+...+..+.|+ |+
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~v~~s-----pd 893 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLK-----VADCRGHLSWVHGVMFS-----PD 893 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-----TT
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-----eeecCCCccceEEEEEC-----CC
Confidence 16778899999999999999887 699999999988753 33344445556677776 99
Q ss_pred CCEEEEEecCCcEEEEEcCCcccccccC----------------------------------------ceeEEeeccCCC
Q 006808 264 GLYVLAISETGVCYIWYGQNIEELRNTK----------------------------------------ATKILSSSEDVN 303 (630)
Q Consensus 264 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~ 303 (630)
|.+|++++.||.|++|++.++....... ..... ..+
T Consensus 894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~ 969 (1249)
T 3sfz_A 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC----CCL 969 (1249)
T ss_dssp SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE----EEE
T ss_pred CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE----EEE
Confidence 9999999999999999975432111000 00111 125
Q ss_pred cccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 304 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
+|+++ .+++|+.+|.+++++ ......+..+.+|...|.+++|+|+|.+| ++++.|+.+++|++.++
T Consensus 970 sp~g~----~l~~g~~~g~i~i~d--------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 970 SPHLE----YVAFGDEDGAIKIIE--------LPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp CTTSS----EEEEEETTSCCEEEE--------TTTTSCEEECCCCSSCCCCEEECSSSSCE-EEECSSSBEEEEETTTT
T ss_pred cCCCC----EEEEEcCCCCEEEEE--------cCCCceeeecccCCCceEEEEECCCCCEE-EEEcCCCEEEEEECCCC
Confidence 66666 788888877655433 23344566777899999999999999999 99999999999998654
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=283.69 Aligned_cols=242 Identities=10% Similarity=0.058 Sum_probs=191.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++| .+++|+|++ .|++|+.||+|+|||+.+++.+..+... ..+|. ..+++++|.+.
T Consensus 83 ~~v--~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~-------------~~~H~-~~V~~v~~spd------- 138 (344)
T 4gqb_B 83 AGV--ADLTWVGER-GILVASDSGAVELWELDENETLIVSKFC-------------KYEHD-DIVSTVSVLSS------- 138 (344)
T ss_dssp SCE--EEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEE-------------EECCS-SCEEEEEECTT-------
T ss_pred CCE--EEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeecc-------------ccCCC-CCEEEEEECCC-------
Confidence 467 555999986 6889999999999999998765443210 01232 24556666654
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeec--CCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA--STK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~ 160 (630)
+.+|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++. +|++++.|++|++||++++++...+.. +..
T Consensus 139 --g~~l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 215 (344)
T 4gqb_B 139 --GTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215 (344)
T ss_dssp --SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CC
T ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeec
Confidence 788999999999999999999988666 58999999999999875 689999999999999999998887653 455
Q ss_pred CeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.+.+++|+|+ +.+|++|+ |+|++||+++++++.++.+|...|++++|+|++. +|++++ .|++|++||+.+++..
T Consensus 216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~~~~- 293 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLSELF- 293 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCCEEE-
T ss_pred cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCcEE-
Confidence 7899999995 56778877 8999999999999999999999999999999985 566666 7999999999887532
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~ 284 (630)
....|.. .+..+.|+ |++. +|++++.||+|++|++.+.
T Consensus 294 ----~~~~H~~-~V~~v~~s-----p~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 294 ----RSQAHRD-FVRDATWS-----PLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ----EECCCSS-CEEEEEEC-----SSSTTEEEEEETTSCEEEEECCC-
T ss_pred ----EEcCCCC-CEEEEEEe-----CCCCeEEEEEcCCCeEEEEECCCC
Confidence 2334444 45666776 8875 5778999999999998764
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2e-33 Score=288.04 Aligned_cols=319 Identities=11% Similarity=0.047 Sum_probs=233.5
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
..++| .+++|+|+|++||+|+.||.|+|||+.+++ .+..+.+|... +.++.|.+.
T Consensus 7 ~~~~i--~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~------------------v~~~~~~~~--- 63 (372)
T 1k8k_C 7 LVEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ------------------VTGVDWAPD--- 63 (372)
T ss_dssp CSSCC--CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC------------------EEEEEEETT---
T ss_pred cCCCe--EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCc------------------ccEEEEeCC---
Confidence 35788 555999999999999999999999999887 77777655444 455666553
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEc-cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce---eEE-
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGK- 154 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~-~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~---~~~- 154 (630)
+.+|++++.+|.|++||+.+++..... ...|...|.+++|+|++++|++++.|+.|++||+..++. ...
T Consensus 64 ------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 64 ------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp ------TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred ------CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence 778999999999999999988754332 356899999999999999999999999999999988763 333
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEEEEC------------------CCCceeeEeecCCCCeEEEEEeeCCcEE
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNC------------------SDHKKMQKFSGHPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~------------------~~~~~~~~~~~h~~~v~~l~~sp~~~~l 214 (630)
...|...|.+++|+|++.+|++++ |.|++||+ ..++.+..+.+|...|.+++|+|++++|
T Consensus 138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence 356788999999999999999987 89999995 4677888888999999999999999999
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC--cc--ccccc
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN--IE--ELRNT 290 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~--~~~~~ 290 (630)
++++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++.+|+++ .||.|++|++.+ +. .+...
T Consensus 218 ~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~-----~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 218 AWVS-HDSTVCLADADKKMAV-----ATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEE-TTTEEEEEEGGGTTEE-----EEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEe-CCCEEEEEECCCCcee-----EEEccCCCCeEEEEEe-----cCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 9988 6999999999887633 3333444455666666 888888877 899999999977 42 22211
Q ss_pred CceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEE-eccCCCcEEEeec-CCc---ceee
Q 006808 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI-LVNSGEDINLNCS-QDG---VLLP 365 (630)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~-~~h~~~v~~~~~s-~dg---~~l~ 365 (630)
......... ..... .++- ..+. .+... +. ..+. ..+ .+|...|.+++|. ++| .+|
T Consensus 286 ~~~~~~~~~-------~~~~~-~~~~-~~~~-----~~~~~---~~-~~~~-~~~~~~h~~~v~~~~~~~~~g~~~~~l- 345 (372)
T 1k8k_C 286 DVPKQSSQR-------GLTAR-ERFQ-NLDK-----KASSE---GS-AAAG-AGLDSLHKNSVSQISVLSGGKAKCSQF- 345 (372)
T ss_dssp CCC---------------CHH-HHHH-HCCC-----CC--------------CCCSSSSSSCEEEEEEEESTTTSCSEE-
T ss_pred Cccccchhh-------hcchh-hhhh-hccc-----ccccc---cC-cccc-ccccccccCCcceeEEecCCCcceeeE-
Confidence 111100000 00000 0000 0000 00000 00 0000 112 3899999999966 777 898
Q ss_pred ccccceeccccceecc
Q 006808 366 MSQSLLKSKRGRYVQN 381 (630)
Q Consensus 366 ~s~s~d~~~~~w~~~~ 381 (630)
+||+.|+.+++|++.+
T Consensus 346 ~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 346 CTTGMDGGMSIWDVRS 361 (372)
T ss_dssp EEEETTSEEEEEEHHH
T ss_pred EEecCCCceEEEEecC
Confidence 9999999999999864
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-33 Score=311.77 Aligned_cols=298 Identities=18% Similarity=0.195 Sum_probs=226.2
Q ss_pred CcccceeEeEECCCC-CEEEEeeCCCcEEEEECCCC-----cEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKG-----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+|++ ++|++|+.|++|+||++.+. .....+.+|...+ .+++|.+.
T Consensus 382 ~~~V--~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v------------------~~v~~s~~ 441 (694)
T 3dm0_A 382 TDMV--TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV------------------EDVVLSSD 441 (694)
T ss_dssp SSCE--EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCE------------------EEEEECTT
T ss_pred Ccee--EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcE------------------EEEEECCC
Confidence 4678 555999875 79999999999999998763 3445566555444 45555443
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe-
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF- 155 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~- 155 (630)
+.+|++|+.||.|++||+.++.....+ .+|...|.+++|+|++++|++|+.|++|++||+.........
T Consensus 442 ---------g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 442 ---------GQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511 (694)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred ---------CCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence 788999999999999999999887666 479999999999999999999999999999998654333222
Q ss_pred --ecCCCCeEEEEEccCC--CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 156 --RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 156 --~~~~~~v~~l~~~p~~--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
.+|...|.+++|+|++ ..+++++ ++|++||+++++....+.+|.+.|++++|+|++++|++++ .|+.|++||+
T Consensus 512 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd~ 590 (694)
T 3dm0_A 512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDL 590 (694)
T ss_dssp STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEET
T ss_pred CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEC
Confidence 3577889999999986 5788887 8999999999999999999999999999999999999988 6999999999
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccc
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS 309 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (630)
.+++. +..+.+. ..+..++|+ |++.++++++ ++.|+|||+.++..+........... .
T Consensus 591 ~~~~~-----~~~~~~~-~~v~~~~~s-----p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~---------~- 648 (694)
T 3dm0_A 591 AEGKK-----LYSLEAN-SVIHALCFS-----PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEA---------E- 648 (694)
T ss_dssp TTTEE-----EECCBCS-SCEEEEEEC-----SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred CCCce-----EEEecCC-CcEEEEEEc-----CCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccc---------c-
Confidence 98763 3333333 346667776 8888877765 56699999998876654332110000 0
Q ss_pred hhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.....+ . .....+...+.+++|||||.+| +||+.|+++++|++.
T Consensus 649 ------~~~~~~--------------~------~~~~~~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 649 ------KADNSG--------------P------AATKRKVIYCTSLNWSADGSTL-FSGYTDGVIRVWGIG 692 (694)
T ss_dssp --------------------------------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred ------cccccc--------------c------ccCCceeEEeeeEEEcCCCCEE-EEEcCCCeEEEEecc
Confidence 000000 0 0001223346889999999999 999999999999974
No 32
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.5e-34 Score=289.80 Aligned_cols=283 Identities=10% Similarity=0.046 Sum_probs=211.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCC-------cEEEEECCCCcEE----------EEeccccccccccccccccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDA-------RIKIWDTLKGQVQ----------TEFADIASTETTSLYGNRLEREHLSV 66 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg-------~i~vwd~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~~~~~~ 66 (630)
-|| .|++|+|||++||+|+.+. .|++|++..+... ..+.++..
T Consensus 15 ~PV--~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~------------------ 74 (365)
T 4h5i_A 15 YPA--YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDD------------------ 74 (365)
T ss_dssp SCE--EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSC------------------
T ss_pred CCE--EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCC------------------
Confidence 489 6679999999999997543 5999998765321 11222221
Q ss_pred ceeeEEecccccccccccCCcEEEE-----------EeCCCeEEEEEccCCeeeEEc--------cCCCCCCEEEEEEec
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVL-----------GTGGGDVLALAVSAGQLKWRL--------SDCHPGGVSAISFAT 127 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~-----------~~~~g~v~iwd~~~~~~~~~~--------~~~h~~~v~~~~~s~ 127 (630)
.+.++.|. +..+++ ++.++.+++|++......... ...+...+.+++|+|
T Consensus 75 ~v~s~~~~-----------~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp 143 (365)
T 4h5i_A 75 SPTAIDAS-----------KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR 143 (365)
T ss_dssp CCCEEEEE-----------TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred ceEEEEeC-----------CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence 23344432 233444 445778999998765322111 123445699999999
Q ss_pred CCCEEEEE--eCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeE--eecCCCCe
Q 006808 128 HGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK--FSGHPGAV 202 (630)
Q Consensus 128 ~g~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~--~~~h~~~v 202 (630)
||++++++ +.|++|++||+.+++++..+. |...|.+++|+|+|+++++++ +.+.+|+..+++.+.. ..+|...|
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence 99997654 478999999999999998887 677899999999999999998 7888888888876543 35688899
Q ss_pred EEEEEeeCCcEEEEEeeCCC----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 203 RFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
.+++|+|+++++++++. |+ .+++|++....... .....+..+...+.++.|+ |+|++||+|+.||.|+|
T Consensus 223 ~~v~fspdg~~l~~~s~-d~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 223 SKINFIADDTVLIAASL-KKGKGIVLTKISIKSGNTSV-LRSKQVTNRFKGITSMDVD-----MKGELAVLASNDNSIAL 295 (365)
T ss_dssp EEEEEEETTEEEEEEEE-SSSCCEEEEEEEEETTEEEE-EEEEEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEEE
T ss_pred EEEEEcCCCCEEEEEec-CCcceeEEeecccccceecc-eeeeeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEEE
Confidence 99999999999999884 55 68899987765321 1122333444456677787 99999999999999999
Q ss_pred EEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
||+.+++.+... +.+|...|++++||
T Consensus 296 wd~~~~~~~~~~------------------------------------------------------~~gH~~~V~~v~fS 321 (365)
T 4h5i_A 296 VKLKDLSMSKIF------------------------------------------------------KQAHSFAITEVTIS 321 (365)
T ss_dssp EETTTTEEEEEE------------------------------------------------------TTSSSSCEEEEEEC
T ss_pred EECCCCcEEEEe------------------------------------------------------cCcccCCEEEEEEC
Confidence 999776543211 12788899999999
Q ss_pred CCcceeeccccceeccccceec
Q 006808 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|||++| +|||.|+++|+|++.
T Consensus 322 pdg~~l-aS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 322 PDSTYV-ASVSAANTIHIIKLP 342 (365)
T ss_dssp TTSCEE-EEEETTSEEEEEECC
T ss_pred CCCCEE-EEEeCCCeEEEEEcC
Confidence 999999 999999999999984
No 33
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=306.07 Aligned_cols=309 Identities=12% Similarity=-0.000 Sum_probs=211.8
Q ss_pred EeeCCCcEEEEECCCCcEEE----EecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe
Q 006808 22 ICSGDARIKIWDTLKGQVQT----EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (630)
Q Consensus 22 s~s~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (630)
+++.|++|+||++.++++.. .+..+ ...+.+++|.|.... ...+.+|++|+.||+
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~------------------~~~V~~v~wsp~~~~---~~~~~~LAs~s~Dgt 236 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHS------------------FGEVWDLKWHEGCHA---PHLVGCLSFVSQEGT 236 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEEC------------------CCSEEEEEECSSCCC---SSSSCEEEEEETTSC
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEec------------------CCcEEEEEECCCCCC---CCCCceEEEEecCCe
Confidence 35578899999998776422 22222 224667777764100 001578999999999
Q ss_pred EEEEEccCCeee----------EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeecCCCCeEEE-
Q 006808 98 VLALAVSAGQLK----------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCM- 165 (630)
Q Consensus 98 v~iwd~~~~~~~----------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l- 165 (630)
|++||+.++... ...+.+|...|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|.++
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999999876421 11235799999999999864 89999999999999999774 456688999999999
Q ss_pred -EEccCC-CEEEEeC--CeEEEEECCCCceeeEeecCCC--CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 166 -AVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 166 -~~~p~~-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+|+|++ .+|++++ ++|++||+++++++.++.+|.. .|.+++|+|+++.+++++ .|++|++||++.+... .
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~---~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAV---H 391 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCC---E
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccc---e
Confidence 578887 8899988 8999999999888888877753 588999999999988877 6999999999987632 1
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee-----EEeeccCCCcccccchhhhh
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-----ILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i 314 (630)
.+ ..|.. .+..+.|+ |+|.+|++|+.||+|++||.... .+..++... ..+. ...|+|+++ .+
T Consensus 392 ~l-~gH~~-~V~sva~S-----p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~-~v~~sp~g~----~~ 458 (524)
T 2j04_B 392 PL-VSRET-TITAIGVS-----RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLW-KWDYSIKDD----KY 458 (524)
T ss_dssp EE-EECSS-CEEEEECC-----SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEE-ECBCCSSSC----EE
T ss_pred ee-ecCCC-ceEEEEeC-----CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEE-EeccCCCCC----eE
Confidence 11 23444 45566676 99999999999999999998654 333322111 0111 112566554 12
Q ss_pred hhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc---eeeccccceeccccceec
Q 006808 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~~~~w~~~ 380 (630)
.. .+..+++. +. ........+.+|...|.+++|+|++. .| ++|+.|+++|+|++.
T Consensus 459 -~~--~~~~~~~~---~~----~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l-Asg~~~g~vrlw~l~ 516 (524)
T 2j04_B 459 -RI--DSSYEVYP---LT----VNDVSKAKIDAHGINITCTKWNETSAGGKCY-AFSNSAGLLTLEYLS 516 (524)
T ss_dssp -EE--CCCCCCCC--------------------CCCSCCCEEECCSTTTTTEE-EEECTTSEEEEEECS
T ss_pred -Ec--cCCceecc---cc----cCCcceeeecCCCceEEEEECCCCCCccHHH-HhhccCceEEEEEcc
Confidence 11 11111110 00 01234556778999999999999964 77 999999999999984
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.3e-33 Score=284.57 Aligned_cols=297 Identities=11% Similarity=0.125 Sum_probs=232.1
Q ss_pred CcccceeEeEECCC----CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 3 SSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 3 s~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.++| .+++|+|+ ...+++++.++.|+|||+.+++.+..+..+.. ......+.+++|.+...
T Consensus 18 ~~~v--~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 18 NQPL--FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD-------------ADADENFYTCAWTYDSN 82 (366)
T ss_dssp CSCE--EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC-------------SCTTCCEEEEEEEECTT
T ss_pred CCce--EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc-------------cCCCCcEEEEEeccCCC
Confidence 4688 56699984 34566666677999999998888777664322 11234678888887642
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEe--
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-- 155 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~-- 155 (630)
. ++.+|++|+.+|.|++||+.+++.+..+. +|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+
T Consensus 83 ~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 83 T-----SHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp T-----CCEEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred C-----CCCEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 1 15689999999999999999998886664 7999999999999 9999999999999999999999998888
Q ss_pred -ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee----------------------------cCCCCeEE
Q 006808 156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS----------------------------GHPGAVRF 204 (630)
Q Consensus 156 -~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~----------------------------~h~~~v~~ 204 (630)
..|...|.+++|+|++.+|++++ |.|++||+++++....+. +|...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 67899999999999999999988 899999999876554433 39999999
Q ss_pred EEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc---------ceeeeeecCCceeeeeEEecCCccCCC--CCEEEEEecC
Q 006808 205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDA--GLYVLAISET 273 (630)
Q Consensus 205 l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~d 273 (630)
++|+ +.++++++ .|+.|++||+.+..... ......+..+...+..+.|+ |+ +.+|++|+.|
T Consensus 237 ~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~d 308 (366)
T 3k26_A 237 VRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-----MDFWQKMLALGNQV 308 (366)
T ss_dssp EEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-----ECTTSSEEEEECTT
T ss_pred EEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-----CCCCCcEEEEEecC
Confidence 9999 67888887 69999999998765310 01122333333344555555 77 9999999999
Q ss_pred CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEecc--CCC
Q 006808 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN--SGE 351 (630)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h--~~~ 351 (630)
|.|++||+.+++..... ...+.+| ...
T Consensus 309 g~i~vwd~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~ 337 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAK---------------------------------------------------CTTLTHHKCGAA 337 (366)
T ss_dssp SCEEEEECCSSSGGGCE---------------------------------------------------EEEECCTTCCSC
T ss_pred CcEEEEECCCCCCcccc---------------------------------------------------ceEEcccccCCc
Confidence 99999999776542210 0122234 678
Q ss_pred cEEEeecCCcceeeccccceeccccceec
Q 006808 352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|.+++|+|+|.+| ++++.|+.+++|++.
T Consensus 338 v~~~~~s~~~~~l-~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 338 IRQTSFSRDSSIL-IAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred eEEEEeCCCCCeE-EEEeCCCEEEEEEec
Confidence 9999999999999 999999999999974
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=282.82 Aligned_cols=310 Identities=12% Similarity=0.113 Sum_probs=231.1
Q ss_pred CcccceeEeEECCCCCEE-EEeeC---CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 3 SSNIRDILTSFSPALDYF-AICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~l-as~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.++| .+++|+|++..+ ++|+. ||.|+|||+.+++....... +| ...+.++.|.+..+
T Consensus 18 ~~~v--~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----------------~~-~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 18 NYTV--FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----------------EK-AKPIKCGTFGATSL 78 (357)
T ss_dssp SSCE--EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----------------EE-SSCEEEEECTTCCT
T ss_pred CCce--EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee----------------cc-cCcEEEEEEcCCCC
Confidence 4578 566999999655 56665 89999999998886544320 12 23567788877643
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCe-eeEEccCCCCCCEEEEEE------ecCCCEEEEEeCCCcEEEEeCCCCc-
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF------ATHGSCIYSAGADGMVCEIDPLTGS- 150 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~------s~~g~~l~s~~~dg~v~iwd~~~~~- 150 (630)
+ +.+|++|+.+|.|++||+.+++ .+..+ .+|...|.++.| +|++++|++++.||.|++||+.+++
T Consensus 79 ~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 79 Q------QRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp T------TCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred C------CceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence 2 5789999999999999999988 55444 589999999955 6789999999999999999999887
Q ss_pred eeEEeecCCC----CeEEEE----EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEee---CCcEEEEE
Q 006808 151 LLGKFRASTK----GISCMA----VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVLSS 217 (630)
Q Consensus 151 ~~~~~~~~~~----~v~~l~----~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~l~~~ 217 (630)
.+..+..+.+ .+.+++ |+|++.++++++ |.|++||+++++.... ..|...|.+++|+| ++.+++++
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEE
T ss_pred cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEE
Confidence 7777776554 888998 788999999987 8999999999887544 56889999999999 89999998
Q ss_pred eeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCcccccccCceeEE
Q 006808 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (630)
+ .|+.|++||+.+++............+...+..+.|+ |++. +|++++.||.|++||+.++.......
T Consensus 231 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----- 299 (357)
T 3i2n_A 231 S-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPIQRSKKD----- 299 (357)
T ss_dssp E-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCSCC--CC-----
T ss_pred C-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCccccccc-----
Confidence 7 6999999999887644111111222334455566666 8888 89999999999999987665422111
Q ss_pred eeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccc
Q 006808 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (630)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~ 376 (630)
..+. .. ...+ ....+..+.+|...|.+++|+|+|.+|+++++.|+.+++
T Consensus 300 --------~~g~----~~----------~~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 300 --------SEGI----EM----------GVAG---------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp --------TTSC----CC----------CCCC---------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred --------CCCC----cc----------cccc---------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 1111 00 0000 112344667899999999999999999338999999999
Q ss_pred ceecc
Q 006808 377 RYVQN 381 (630)
Q Consensus 377 w~~~~ 381 (630)
|++.+
T Consensus 349 w~~~~ 353 (357)
T 3i2n_A 349 LIVTK 353 (357)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99853
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-32 Score=276.90 Aligned_cols=236 Identities=19% Similarity=0.296 Sum_probs=198.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc----EEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.++| .+++|+|+|++||+|+.|+.|++|++.++. ....+.+|.. .+.++.|.+
T Consensus 97 ~~~v--~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~--- 153 (340)
T 1got_B 97 SSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG------------------YLSCCRFLD--- 153 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS------------------CEEEEEEEE---
T ss_pred CccE--EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc------------------cEEEEEECC---
Confidence 3457 667999999999999999999999998753 3344443332 455666654
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
...+++++.||.|++||+.+++.+..+ .+|.+.|.+++|+|++++|++|+.|++|++||+++++++..+.+|
T Consensus 154 -------~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h 225 (340)
T 1got_B 154 -------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp -------TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred -------CCcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence 335899999999999999999988665 479999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec--CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
...|.+++|+|++.+|++++ |+|++||+++++.+..+.. +...|++++|+|++++|++++ .|+.|++||+.++..
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADR 304 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEcccCcE
Confidence 99999999999999999998 8999999999988777652 335799999999999999988 699999999988763
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
. ..+..+...+.++.|+ |+|.+|++|+.||.|+|||
T Consensus 305 ~-----~~~~~h~~~v~~~~~s-----~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 305 A-----GVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp E-----EEEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred e-----eEeecCCCcEEEEEEc-----CCCCEEEEEcCCccEEecC
Confidence 3 2333444456677777 9999999999999999996
No 37
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7e-33 Score=314.48 Aligned_cols=248 Identities=13% Similarity=0.225 Sum_probs=211.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++| .+++|+|+|++||+|+.||.|+|||+.++..+..+.+|... ++++.|.+.
T Consensus 13 ~~~v--~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~------------------v~~~~~s~~------ 66 (814)
T 3mkq_A 13 SDRV--KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP------------------VRAGKFIAR------ 66 (814)
T ss_dssp CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------------EEEEEEEGG------
T ss_pred CCce--EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCc------------------EEEEEEeCC------
Confidence 4678 55699999999999999999999999999999888766554 445555553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (630)
+.+|++|+.+|.|++||+.+++.+..+ .+|...|++++|+|++++|++++.||.|++||+.++ .....+..|...
T Consensus 67 ---~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 142 (814)
T 3mkq_A 67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (814)
T ss_dssp ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred ---CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence 778999999999999999999988666 479999999999999999999999999999999987 677788899999
Q ss_pred eEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCC-CCeEEEEEee--CCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 162 v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp--~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|.+++|+| ++..+++++ |.|++||+.++.....+..+. ..+.+++|+| ++.++++++ .|+.|++||+.+++.
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~- 220 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSC- 220 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEE-
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcE-
Confidence 99999999 888898887 899999999888877776555 8899999999 999999988 699999999988763
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
...+..+...+.++.|+ |++.+|++++.||.|++||..+++.+....
T Consensus 221 ----~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 267 (814)
T 3mkq_A 221 ----VATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267 (814)
T ss_dssp ----EEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred ----EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence 33333344456666776 999999999999999999999887665543
No 38
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.6e-33 Score=284.47 Aligned_cols=286 Identities=11% Similarity=0.088 Sum_probs=218.7
Q ss_pred CcccceeEeEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+|+| ++||+|+.||.|+|||+.++.....+.. .+| ...+.++.|.+.+
T Consensus 73 ~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------~~h-~~~v~~~~~~~~~---- 130 (383)
T 3ei3_B 73 DRRV--TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG---------------MGP-GDAITGMKFNQFN---- 130 (383)
T ss_dssp SSCE--EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC---------------CST-TCBEEEEEEETTE----
T ss_pred CCCE--EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec---------------CCc-CCceeEEEeCCCC----
Confidence 3577 566999999 9999999999999999998887766541 022 2356677777643
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+.+|++++.+|.|++||+.+.... .+. .+|...|.+++|+|++++|++++.|+.|++||+ +++++..+..|.
T Consensus 131 ----~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~ 204 (383)
T 3ei3_B 131 ----TNQLFVSSIRGATTLRDFSGSVIQ-VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK 204 (383)
T ss_dssp ----EEEEEEEETTTEEEEEETTSCEEE-EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS
T ss_pred ----CCEEEEEeCCCEEEEEECCCCceE-EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC
Confidence 678999999999999999964432 332 235588999999999999999999999999999 688889999999
Q ss_pred CCeEEEEEccCCC-EEEEeC--CeEEEEECCC----CceeeEeecCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGK-MLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~----~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|.+++|+|++. ++++++ +.|++||+++ +..+..+ +|...|.+++|+| ++.+|++++ .|+.|++||+.+
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~~ 282 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSYD 282 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEETTB
T ss_pred CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEECCC
Confidence 9999999999998 888887 8999999988 5566666 6999999999999 999999988 699999999988
Q ss_pred Cccccceeeee---ecCCc---------eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeec
Q 006808 232 VKKQSASCVLA---MEHPA---------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (630)
Q Consensus 232 ~~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (630)
+.......... ..+.. .....+.++ |++.+ +++.||.|+|||+.+++.+....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s-----~dg~~--s~s~d~~i~iwd~~~~~~~~~l~-------- 347 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY-----PDDQL--LLNDKRTIDIYDANSGGLVHQLR-------- 347 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB-----CCTTT--CTTCCCCEEEEETTTCCEEEEEC--------
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEec-----CCccc--ccCCCCeEEEEecCCCceeeeec--------
Confidence 76431100000 00111 111123333 66665 67789999999987765432211
Q ss_pred cCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+ ..|...+..++|+|+|.+| ++|+ |+.+++|++
T Consensus 348 -------~--------------------------------------~~~~~~~~~~~~s~~g~~l-~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 348 -------D--------------------------------------PNAAGIISLNKFSPTGDVL-ASGM-GFNILIWNR 380 (383)
T ss_dssp -------B--------------------------------------TTBCSCCCEEEECTTSSEE-EEEE-TTEEEEEEC
T ss_pred -------C--------------------------------------CCCCceEEEEEEecCccEE-EEec-CCcEEEEec
Confidence 0 0133456677999999999 8887 999999998
Q ss_pred c
Q 006808 380 Q 380 (630)
Q Consensus 380 ~ 380 (630)
.
T Consensus 381 ~ 381 (383)
T 3ei3_B 381 E 381 (383)
T ss_dssp C
T ss_pred C
Confidence 5
No 39
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4e-33 Score=330.92 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=263.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...+ .++.|.+...
T Consensus 657 ~~~v--~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~---- 712 (1249)
T 3sfz_A 657 EDEV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV------------------NCCHFTNKSN---- 712 (1249)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE------------------EEEEECSSSS----
T ss_pred CCCE--EEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE------------------EEEEEecCCC----
Confidence 4678 666999999999999999999999999999999888665544 4555554321
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee------
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR------ 156 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~------ 156 (630)
..++++|+.+|.|++||+.++.....+. +|...|++++|+|+++++++++.||.|++||+.+++....+.
T Consensus 713 ---~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 788 (1249)
T 3sfz_A 713 ---HLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788 (1249)
T ss_dssp ---CCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred ---ceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence 5689999999999999999999886664 799999999999999999999999999999987765443321
Q ss_pred -------------------------------------------------cCCCCeEEEEEccCCCEEEEeC--CeEEEEE
Q 006808 157 -------------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFN 185 (630)
Q Consensus 157 -------------------------------------------------~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd 185 (630)
+|...|.+++|+|++.++++++ |.|++||
T Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868 (1249)
T ss_dssp -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 5667889999999999999998 8999999
Q ss_pred CCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce--------------------------e
Q 006808 186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------------------C 239 (630)
Q Consensus 186 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~--------------------------~ 239 (630)
+.++..+..+.+|...|++++|+|++++|++++ .|+.|++|++......... .
T Consensus 869 ~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred cCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence 999999999999999999999999999999988 6999999997642110000 0
Q ss_pred eee------ecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 240 VLA------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 240 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
... .......+.+++++ |++.++++|+.+|.|++|++.++..+.........+.+. .++++++ .
T Consensus 948 ~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l-~~s~dg~----~ 1017 (1249)
T 3sfz_A 948 LIAGKTGQIDYLPEAQVSCCCLS-----PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI-QFTADGK----T 1017 (1249)
T ss_dssp EEEESSCCEEEECCSCEEEEEEC-----TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE-EECSSSS----C
T ss_pred EEecCcceEEEcccCcEEEEEEc-----CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEE-EECCCCC----E
Confidence 000 00112235566666 999999999999999999999887765543332222221 2677777 8
Q ss_pred hhhccccccccCCce------------------------eE--------EEEEcCccCceeeEEeccCCCcEEEeecCCc
Q 006808 314 IFAAKLQDIVKPASV------------------------HT--------FVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (630)
Q Consensus 314 i~~~~~d~~~~~~~~------------------------~~--------~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (630)
+++++.|+.+++|+. .+ +..+..........+.+|...|.+++|+|||
T Consensus 1018 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1097 (1249)
T ss_dssp EEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSS
T ss_pred EEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCC
Confidence 888888887766531 11 1112222334556777899999999999999
Q ss_pred ceeeccccceeccccceecc
Q 006808 362 VLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 362 ~~l~~s~s~d~~~~~w~~~~ 381 (630)
.+| ++++.|+++++|++..
T Consensus 1098 ~~l-~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A 1098 TKF-SSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp SSC-EEECCSSCCCEECSSS
T ss_pred CEE-EEEcCCCcEEEEECCC
Confidence 999 9999999999999864
No 40
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-34 Score=294.37 Aligned_cols=241 Identities=9% Similarity=0.110 Sum_probs=185.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCC--cEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.||.|+|||+.++ +.+..+.+|... +.+++|.+.
T Consensus 11 ~~~v--~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~------------------v~~~~~s~~---- 66 (377)
T 3dwl_C 11 PKPS--YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKI------------------VTCVDWAPK---- 66 (377)
T ss_dssp SSCC--SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSC------------------EEEEEECTT----
T ss_pred CCcE--EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCce------------------EEEEEEeCC----
Confidence 4688 45599999999999999999999999988 566666655444 455566553
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eeEE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGK 154 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~---~~~~ 154 (630)
+.+|++|+.||.|++||+.++. ....+ .+|...|.+++|+|++++|++++.|+.|++||+.+++ ....
T Consensus 67 -----~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 67 -----SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp -----TCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred -----CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 6789999999999999999887 34333 4799999999999999999999999999999999887 4677
Q ss_pred eec-CCCCeEEEEEccCCCEEEEeC--CeEEEEECC------------------CCceeeEeecCCCCeEEEEEeeCCcE
Q 006808 155 FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCS------------------DHKKMQKFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 155 ~~~-~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~------------------~~~~~~~~~~h~~~v~~l~~sp~~~~ 213 (630)
+.. |...|.+++|+|++++|++++ +.|++||+. .++++..+ +|...|++++|+|++++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence 877 899999999999999999988 899999985 34556666 89999999999999999
Q ss_pred EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
|++++ .|+.|++||+.+++... ..+..+..+...+..+.|+ |++.+|++++.++.+ +|+..
T Consensus 220 l~~~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 220 LAYAG-HDSSVTIAYPSAPEQPP-RALITVKLSQLPLRSLLWA-----NESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEE-TTTEEC-CEECSTTSCE-EECCCEECSSSCEEEEEEE-----ETTEEEEEESSSSEE-EECCC
T ss_pred EEEEe-CCCcEEEEECCCCCCcc-eeeEeecCCCCceEEEEEc-----CCCCEEEEEcCCcEE-EEEeC
Confidence 99988 69999999999887420 1123333444455666676 899999888766655 66654
No 41
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-32 Score=288.04 Aligned_cols=304 Identities=13% Similarity=0.144 Sum_probs=242.8
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+++++|++|++|+.||+|++||+.+++.+..+.+|...+ .++.|. +.++++
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v------------------~~~~~~-----------~~~l~s 174 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV------------------WSSQMR-----------DNIIIS 174 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCE------------------EEEEEE-----------TTEEEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCE------------------EEEEec-----------CCEEEE
Confidence 567789999999999999999999999998887665443 445443 457999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
|+.||.|++||+.+++.+..+ .+|...|.++.|+ ++.+++|+.||.|++||+.+++++..+.+|...|.+++| ++
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred EeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 999999999999999988666 4799999999995 568999999999999999999999999999999999999 67
Q ss_pred CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCcee
Q 006808 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (630)
Q Consensus 172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (630)
.++++++ |.|++||+.+++.+..+.+|...|.++.| ++.++++++ .|+.|++||+.+++.. ..+..+...
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~ 321 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGNCI-----HTLTGHQSL 321 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCCEE-----EEECCCCSC
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCCEE-----EEEcCCccc
Confidence 7888887 89999999999999999999999999999 788998888 6999999999987633 233333333
Q ss_pred eeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc---eeEEeeccCCCcccccchhhhhhhccccccccCC
Q 006808 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (630)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 326 (630)
+.... +++.++++|+.||.|++||+.+++.+..... ....+.+.. + +++ .+++++.||.+++|
T Consensus 322 v~~~~-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~----~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 322 TSGME-------LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-F--NKN----FVITSSDDGTVKLW 387 (445)
T ss_dssp EEEEE-------EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE-E--CSS----EEEEEETTSEEEEE
T ss_pred EEEEE-------EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE-E--CCC----EEEEEeCCCeEEEE
Confidence 33333 3578999999999999999998877655432 111111111 2 233 88999998876665
Q ss_pred ceeEEEEEcCccCceeeEE-----eccCCCcEEEeecCCcceeeccccceec----cccceec
Q 006808 327 SVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ 380 (630)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~~s~s~d~~----~~~w~~~ 380 (630)
+ ......+..+ ..|.+.|.+++|+|+|.++ ++|+.|++ +.+|++.
T Consensus 388 d--------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-a~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 388 D--------LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp E--------TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred E--------CCCCceeeeeeccccCCCCceEEEEEecCCEEEE-EEcccCCCCccEEEEEECC
Confidence 4 2222333344 3688899999999999999 99999998 8888885
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-32 Score=280.19 Aligned_cols=241 Identities=18% Similarity=0.287 Sum_probs=199.3
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|+|+|++||+|+.|++|+|||+.+++.+..+.+|...+. ++.|.+. +..
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~------------------~~~~~p~---------~~~ 179 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY------------------SLDYFPS---------GDK 179 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEECTT---------SSE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE------------------EEEEcCC---------CCE
Confidence 4569999999999999999999999999999888886665444 4555443 778
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEe-------ecCCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-------RASTK 160 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~ 160 (630)
|++|+.||.|++||+.+++....+ .+...+.+++|+| ++++|++|+.|+.|++||+.+++.+..+ .+|..
T Consensus 180 l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~ 257 (393)
T 1erj_A 180 LVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257 (393)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred EEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC
Confidence 999999999999999999887665 3667899999999 8999999999999999999999888776 56888
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCC------------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~------------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.|.+++|+|++.+|++++ +.|++||+.+. .+...+.+|...|.+++|+|++.+|++++ .|+.|++
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~i 336 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLF 336 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEE
Confidence 999999999999999998 89999999753 34567789999999999999999999988 6999999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
||+.+++.. .. ...|...+..+.+.+...+.|++.+|++|+.||.|+||++..
T Consensus 337 wd~~~~~~~---~~-l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 337 WDKKSGNPL---LM-LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EETTTCCEE---EE-EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EECCCCeEE---EE-ECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999987643 12 223555554444443334557899999999999999999754
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-32 Score=297.82 Aligned_cols=338 Identities=14% Similarity=0.100 Sum_probs=252.0
Q ss_pred cc-cceeEeEECC--CCCEEEEeeCCCcEEEEECCCC--------cEEEEeccccccccccccccccccccc--------
Q 006808 4 SN-IRDILTSFSP--ALDYFAICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHL-------- 64 (630)
Q Consensus 4 ~~-V~~~~~~fs~--dg~~las~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~-------- 64 (630)
++ | .+++|+| +|++||+|+.||.|+|||+.++ .....+..|...+..+.|+++ +..
T Consensus 64 ~~~v--~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~~~ 138 (615)
T 1pgu_A 64 SSVV--TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE---GRRLCVVGEGR 138 (615)
T ss_dssp TSCE--EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT---SSEEEEEECCS
T ss_pred CceE--EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC---CCEEEEeccCC
Confidence 45 7 5669999 9999999999999999999755 677788888888888888876 211
Q ss_pred ---------------------ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCC---CE
Q 006808 65 ---------------------SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GV 120 (630)
Q Consensus 65 ---------------------~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~---~v 120 (630)
...+.++.|.+.. ...+++++.+|.|++||+.+++.+..+. +|.. .|
T Consensus 139 ~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~--------~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v 209 (615)
T 1pgu_A 139 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR--------PMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFV 209 (615)
T ss_dssp SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS--------SCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCE
T ss_pred CCccEEEEEECCCcceeeecCCccEEEEEECCCC--------CcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCCceE
Confidence 1245666666542 3379999999999999999998886664 6888 99
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEEe-e---cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceee
Q 006808 121 SAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKF-R---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 121 ~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~~-~---~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~ 193 (630)
.+++|+|+ +++|++++.||.|++||+.+++.+..+ . .|...|.+++|+ ++.+|++++ +.|++||+.+++.+.
T Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ 288 (615)
T ss_dssp EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 99999999 999999999999999999999999998 6 799999999999 999999988 899999998776554
Q ss_pred Eeec---------------------------------------------CCCCeE-------------------------
Q 006808 194 KFSG---------------------------------------------HPGAVR------------------------- 203 (630)
Q Consensus 194 ~~~~---------------------------------------------h~~~v~------------------------- 203 (630)
.+.. |...|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~ 368 (615)
T 1pgu_A 289 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH 368 (615)
T ss_dssp EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE
T ss_pred EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc
Confidence 4432 222333
Q ss_pred --------EEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc-----------------------------------------
Q 006808 204 --------FMTFSDNGKYVLSSAVGERYIALWRTDGVKK----------------------------------------- 234 (630)
Q Consensus 204 --------~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~----------------------------------------- 234 (630)
+++| +++..+++++ .|+.|++|++...+.
T Consensus 369 ~~~~~~v~~~~~-~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (615)
T 1pgu_A 369 QDHSNLIVSLDN-SKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN 446 (615)
T ss_dssp CCCCSCEEEEEC-CSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CcccCceEEEEE-CCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccC
Confidence 3333 2234444444 344555444432100
Q ss_pred -------------------ccce---------ee-eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 235 -------------------QSAS---------CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 235 -------------------~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.... .. ..+..+...+..+.|+ |++.+|++++.||.|++||+.+++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEEcCCCCeEEEeeCCCCc
Confidence 0000 00 2222334455666776 999999999999999999999998
Q ss_pred cccccCc----eeEEeeccCCCcc----------cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCC
Q 006808 286 ELRNTKA----TKILSSSEDVNSK----------SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351 (630)
Q Consensus 286 ~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~ 351 (630)
.+..... ....+. |+| +++ .+++++.|+.+++|+. . .....+..+.+|...
T Consensus 522 ~~~~~~~~h~~~v~~~~----~sp~~~~~~~~~~~~~----~l~~~~~dg~i~iw~~-----~--~~~~~~~~~~~h~~~ 586 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAIS----WKPAEKGANEEEIEED----LVATGSLDTNIFIYSV-----K--RPMKIIKALNAHKDG 586 (615)
T ss_dssp EEECCSCCCSSCEEEEE----ECCCC------CCSCC----EEEEEETTSCEEEEES-----S--CTTCCEEETTSSTTC
T ss_pred ceeEeecCCCCceeEEE----EcCccccccccccCCC----EEEEEcCCCcEEEEEC-----C--CCceechhhhcCccc
Confidence 8766443 223333 677 666 8999999887666442 1 111456677789999
Q ss_pred cEEEeecCCcceeeccccceeccccceec
Q 006808 352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|.+++|+|||. | ++++.|+.+++|++.
T Consensus 587 v~~l~~s~~~~-l-~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 587 VNNLLWETPST-L-VSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEEEEETTE-E-EEEETTSCEEEEEEC
T ss_pred eEEEEEcCCCC-e-EEecCCceEEEEeee
Confidence 99999999999 8 999999999999985
No 44
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-32 Score=269.97 Aligned_cols=246 Identities=16% Similarity=0.211 Sum_probs=193.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCC--CcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.|++|+|||+.+ ++++..+.+|... +.+++|.++..
T Consensus 9 ~~~V--~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~------------------V~~v~~s~~~~-- 66 (297)
T 2pm7_B 9 NEMI--HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP------------------VWRVDWAHPKF-- 66 (297)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC------------------EEEEEECCGGG--
T ss_pred cCce--EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC------------------eEEEEecCCCc--
Confidence 4678 4559999999999999999999999974 3566677655544 45666654311
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCce--eEE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL--LGK 154 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~~--~~~ 154 (630)
+.+|++|+.||+|++||+.++. .+.. ..+|...|.+++|+|+ |.+|++++.|++|++||++++.. ...
T Consensus 67 -----g~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 140 (297)
T 2pm7_B 67 -----GTILASCSYDGKVMIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140 (297)
T ss_dssp -----CSEEEEEETTTEEEEEEBSSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred -----CCEEEEEcCCCEEEEEEcCCCceEEEEE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee
Confidence 6789999999999999999874 2323 3579999999999997 88999999999999999987632 456
Q ss_pred eecCCCCeEEEEEccC-------------CCEEEEeC--CeEEEEECCCCc----eeeEeecCCCCeEEEEEeeCC---c
Q 006808 155 FRASTKGISCMAVSSD-------------GKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG---K 212 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~-------------~~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~---~ 212 (630)
+.+|...|.+++|+|+ +++|++|+ ++|++||++++. ....+.+|...|.+++|+|++ .
T Consensus 141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence 7889999999999997 46899887 899999998765 566788999999999999985 7
Q ss_pred EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
+|++++ .|++|++||+...........+........+..+.|+ |+|.+|++++.||.|+||+..
T Consensus 221 ~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEEC-----CCCCEEEEEcCCCcEEEEEEC
Confidence 888877 7999999999875321001111112223345566676 999999999999999999975
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.6e-33 Score=289.83 Aligned_cols=281 Identities=14% Similarity=0.084 Sum_probs=206.1
Q ss_pred ccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEE--ecccccccccccccccccccccccceeeEEecccccccc
Q 006808 5 NIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 5 ~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.| .|++|+| ++++||+|+.||+|+|||+.++..... +.+|.. .+++++|.|.+
T Consensus 121 ~V--~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~------------------~V~~l~f~p~~---- 176 (435)
T 4e54_B 121 RA--TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG------------------SITGLKFNPLN---- 176 (435)
T ss_dssp CE--EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSC------------------CCCEEEECSSC----
T ss_pred CE--EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCC------------------CEEEEEEeCCC----
Confidence 47 5669999 567999999999999999987764433 333333 46677777654
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEc-cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~-~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+.+|++|+.||+|++||+.++...... ...+...+.+++|+|++.+|++|+.||.|++||+. ++.+..+.+|..
T Consensus 177 ----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~ 251 (435)
T 4e54_B 177 ----TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK 251 (435)
T ss_dssp ----TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSS
T ss_pred ----CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccc
Confidence 678999999999999999877553222 12344568899999999999999999999999986 566778899999
Q ss_pred CeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeE---eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK---FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 ~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~---~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.|.+++|+|++. ++++++ +.|++||+++++.... ..+|..+|++++|+|+|.+|++++ .|+.|++||+.++..
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWDC 330 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSSS
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCcc
Confidence 999999999876 666776 8999999988765433 357999999999999999999988 699999999988764
Q ss_pred ccceeeeeecCC------ceeeeeEEecCCccCCCCCEEEEEec------------CCcEEEEEcCCcccccccCceeEE
Q 006808 235 QSASCVLAMEHP------AVFMDCRCIDNGGVDDAGLYVLAISE------------TGVCYIWYGQNIEELRNTKATKIL 296 (630)
Q Consensus 235 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~~~~~ 296 (630)
. .....|. ...+.. .+. |++.++++++. ++.|++||..+++.+...
T Consensus 331 ~----~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l------ 394 (435)
T 4e54_B 331 P----LGLIPHPHRHFQHLTPIKA-AWH-----PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL------ 394 (435)
T ss_dssp E----EEECCCCCCCCSSSCCCBC-EEC-----SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE------
T ss_pred c----eEEecccccccccceeEEE-EEc-----CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE------
Confidence 3 1111111 111222 222 55555555532 235666666555432111
Q ss_pred eeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEE-eecCCcceeeccccceeccc
Q 006808 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLKSKR 375 (630)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~~~~ 375 (630)
..+|...|.++ +|+|||.+| ++|+ |+.++
T Consensus 395 ------------------------------------------------~~~~~~~v~s~~~fspdg~~l-asg~-d~~i~ 424 (435)
T 4e54_B 395 ------------------------------------------------YDPESSGISSLNEFNPMGDTL-ASAM-GYHIL 424 (435)
T ss_dssp ------------------------------------------------CCSSCCCCCCEEEECTTSSCE-EEEC-SSEEE
T ss_pred ------------------------------------------------eCCCCCcEEEEEEECCCCCEE-EEEc-CCcEE
Confidence 11455667776 699999999 8887 78999
Q ss_pred cceecc
Q 006808 376 GRYVQN 381 (630)
Q Consensus 376 ~w~~~~ 381 (630)
+|++++
T Consensus 425 iW~~~~ 430 (435)
T 4e54_B 425 IWSQQE 430 (435)
T ss_dssp ECCCC-
T ss_pred EEECCc
Confidence 999864
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.8e-32 Score=281.25 Aligned_cols=304 Identities=15% Similarity=0.161 Sum_probs=231.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc------EEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+| ++||+|+.||.|+||++.++. ....+.+|.. .+.++.|.+.
T Consensus 16 ~~~i--~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~ 73 (397)
T 1sq9_A 16 DADI--FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS------------------GLHHVDVLQA 73 (397)
T ss_dssp SSCE--EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT------------------CEEEEEEEEE
T ss_pred hcCe--EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC------------------cEEEEEEecc
Confidence 4688 5669999 799999999999999999887 5666654433 4667777764
Q ss_pred ccccccccCC---cEEEEEeCCCeEEEEEccCCee-----eEEccCCC-----CCCEEEEEEe----cCCCE-EEEEeCC
Q 006808 77 DRKKKRKLGS---SLLVLGTGGGDVLALAVSAGQL-----KWRLSDCH-----PGGVSAISFA----THGSC-IYSAGAD 138 (630)
Q Consensus 77 ~~~~~~~~~~---~~l~~~~~~g~v~iwd~~~~~~-----~~~~~~~h-----~~~v~~~~~s----~~g~~-l~s~~~d 138 (630)
... .+ .+|++++.+|.|++|++.+++. ...+ ..| ...|.+++|+ |++++ |++++.|
T Consensus 74 ~~~-----~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 74 IER-----DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EET-----TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred ccc-----CCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 100 04 6899999999999999998875 5444 467 5899999999 99999 9999999
Q ss_pred CcEEEEeCCC------CceeE-----Eee-------cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec-
Q 006808 139 GMVCEIDPLT------GSLLG-----KFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG- 197 (630)
Q Consensus 139 g~v~iwd~~~------~~~~~-----~~~-------~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~- 197 (630)
|.|++||+.+ ++.+. .+. .|...|.+++|+|++ ++++++ |.|++||+++++.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 226 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ 226 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc
Confidence 9999999998 76666 774 478899999999999 999888 8999999999999999998
Q ss_pred --C---CCCeEEEEEeeCCcEEEEEeeCC---CeEEEEEcCCCccccceeeeeecC-------------CceeeeeEEec
Q 006808 198 --H---PGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEH-------------PAVFMDCRCID 256 (630)
Q Consensus 198 --h---~~~v~~l~~sp~~~~l~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 256 (630)
| ...|.+++|+|++++|++++ .| +.|++||+.+++.. ..+.. +...+..+.|+
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERI-----GSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEE-----EEECBC--------CCBSBSSCEEEEEEC
T ss_pred ccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCccc-----ceeccCcccccccccccccCCcEEEEEEC
Confidence 9 99999999999999999988 58 99999999987633 22322 34455666676
Q ss_pred CCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcC
Q 006808 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (630)
Q Consensus 257 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~ 336 (630)
|++.+|++++.||.|++||+.+++.+....... ...... .- ...| .
T Consensus 301 -----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~--~~----~~~g--------------~ 346 (397)
T 1sq9_A 301 -----DSGETLCSAGWDGKLRFWDVKTKERITTLNMHC---------DDIEIE--ED----ILAV--------------D 346 (397)
T ss_dssp -----SSSSEEEEEETTSEEEEEETTTTEEEEEEECCG---------GGCSSG--GG----CCCB--------------C
T ss_pred -----CCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc---------Ccccch--hh----hhcc--------------c
Confidence 899999999999999999998876644332100 000000 00 0000 0
Q ss_pred ccCceeeEEeccCCCcEEEeecCCc----------ceeeccccceeccccceecc
Q 006808 337 LLKPSFQKILVNSGEDINLNCSQDG----------VLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg----------~~l~~s~s~d~~~~~w~~~~ 381 (630)
. .....|...|.+++|+|+| .+| ++++.|+.+++|++.+
T Consensus 347 ~-----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 347 E-----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESL-CCVCLDRSIRWFREAG 395 (397)
T ss_dssp T-----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE-EEEETTTEEEEEEEEC
T ss_pred c-----ccccccCCceeEEEeccccccccccccccceE-EEecCCCcEEEEEcCC
Confidence 0 0112578899999999999 688 9999999999999854
No 47
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=309.18 Aligned_cols=337 Identities=9% Similarity=0.005 Sum_probs=238.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+| |++||+++.|++|+|||+.+++++..+. +.. .+++++|.+.
T Consensus 58 ~~~V--~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~------------------~V~~v~~sp~------ 109 (902)
T 2oaj_A 58 RSAI--KEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPG------------------KITSIDTDAS------ 109 (902)
T ss_dssp CCCE--EEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSS------------------CEEEEECCTT------
T ss_pred CCCE--EEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCC------------------CEEEEEECCC------
Confidence 3578 5559999 8899999999999999999999887774 222 3556666554
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeE----------EccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCce
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKW----------RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSL 151 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~----------~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~ 151 (630)
+.++++|+.+|.|++||+.++.... ....+|.++|++++|+|+ +..+++|+.||.| +||++++++
T Consensus 110 ---g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~ 185 (902)
T 2oaj_A 110 ---LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI 185 (902)
T ss_dssp ---CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE
T ss_pred ---CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce
Confidence 7889999999999999999887531 123579999999999996 4689999999999 999999999
Q ss_pred eEEeecC------------------CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE--e---ec---------
Q 006808 152 LGKFRAS------------------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK--F---SG--------- 197 (630)
Q Consensus 152 ~~~~~~~------------------~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~--~---~~--------- 197 (630)
+..+..| ...|.+++|+|+|.+|++++ |.|++||+++++++.. + .+
T Consensus 186 ~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~ 265 (902)
T 2oaj_A 186 KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR 265 (902)
T ss_dssp EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence 8888765 46799999999999999998 8999999999887653 2 12
Q ss_pred ----CCCCeEEEEEee----CCcEEEEEeeCC-----CeEEEEEcCC------------------C--cc-c--------
Q 006808 198 ----HPGAVRFMTFSD----NGKYVLSSAVGE-----RYIALWRTDG------------------V--KK-Q-------- 235 (630)
Q Consensus 198 ----h~~~v~~l~~sp----~~~~l~~~~~~d-----~~i~vwd~~~------------------~--~~-~-------- 235 (630)
|..+|++++|++ ++..++++++.+ ..+++|++.. . .. .
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v 345 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPI 345 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCE
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCce
Confidence 345799999965 333444433234 2677776310 0 00 0
Q ss_pred ----------------------------cceeeeee-----------------cCCceeeeeEEec--------------
Q 006808 236 ----------------------------SASCVLAM-----------------EHPAVFMDCRCID-------------- 256 (630)
Q Consensus 236 ----------------------------~~~~~~~~-----------------~~~~~~~~~~~~~-------------- 256 (630)
.....+.+ .+.. .+.++.++
T Consensus 346 ~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~-~v~~~~~s~~~~~~w~~~~~~~ 424 (902)
T 2oaj_A 346 VNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP-LATTSMAASVPNKLWLGALSAA 424 (902)
T ss_dssp EEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT-BEEEEEEEEEEHHHHHHHHHTT
T ss_pred EEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC-CeeEEEEEEcCHHHHHHHHhcc
Confidence 00000000 0000 11111110
Q ss_pred ---------------CCccCCCCCEEEEEecCCcEEEEEcCCccccc--------------ccCceeEEeeccCCCcccc
Q 006808 257 ---------------NGGVDDAGLYVLAISETGVCYIWYGQNIEELR--------------NTKATKILSSSEDVNSKSQ 307 (630)
Q Consensus 257 ---------------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 307 (630)
...|+|++++|++|+.||+|++||+.++.... .+......+. |+|++
T Consensus 425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva----fspdg 500 (902)
T 2oaj_A 425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS----FAAET 500 (902)
T ss_dssp BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE----EETTT
T ss_pred cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE----ecCCC
Confidence 01235899999999999999999998874311 1122233333 78998
Q ss_pred cchhhhhhhccccccccCCceeEEEEEcC-----------------c--------------------cCceeeEEeccCC
Q 006808 308 KSATAAIFAAKLQDIVKPASVHTFVAYGL-----------------L--------------------LKPSFQKILVNSG 350 (630)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~-----------------~--------------------~~~~~~~~~~h~~ 350 (630)
+ .+++|+.|+.+++|+..-...++. . -...+..+.+|.+
T Consensus 501 ~----~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 501 L----ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp T----EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred C----eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 8 999999999888876432100000 0 0023567778999
Q ss_pred CcEEEeecCCcceeeccccceeccccceeccc
Q 006808 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.|++++||||| +| ++|+.|+++++|++...
T Consensus 577 ~V~svafSpdG-~l-Asgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 577 KTSAINNSNIG-FV-GIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp SEEEEEECBTS-EE-EEEETTSEEEEEETTTT
T ss_pred cEEEEEecCCc-EE-EEEeCCCcEEEEECCCC
Confidence 99999999999 88 99999999999998653
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-32 Score=279.63 Aligned_cols=277 Identities=15% Similarity=0.188 Sum_probs=227.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|++ ..+++++.||.|++||+.+++....+.. .....+++++|.+. +.+
T Consensus 97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~-----------------~~~~~v~~v~~s~~---------~~~ 148 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET-----------------DESTYVASVKWSHD---------GSF 148 (401)
T ss_dssp BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC-----------------CTTCCEEEEEECTT---------SSE
T ss_pred EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec-----------------CCCCCEEEEEECCC---------CCE
Confidence 4456665 5688888999999999999998776653 11335677888774 778
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCceeEEeecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~ 167 (630)
|++|+.+|.|++||+.+++.+..+. +|...|.+++|+ ++.|++++.||.|++||++ .+..+..+..|...|.+++|
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 225 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEE
Confidence 9999999999999999998886664 799999999994 5799999999999999998 56778889999999999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee--CCCeEEEEEcCCCccccceeeeee
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
+|++.+|++++ +.|++||+.+++.+..+.+|...|.+++|+|++..++++++ .|+.|++||+.+++.. ..+
T Consensus 226 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-----~~~ 300 (401)
T 4aez_A 226 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-----NTV 300 (401)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-----EEE
T ss_pred cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-----EEE
Confidence 99999999998 89999999999999999999999999999998876666543 5999999999987633 333
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
.+.. .+..+.|+ |++.++++++ .||.|++|++.++....
T Consensus 301 ~~~~-~v~~~~~s-----~~~~~l~~~~g~~dg~i~v~~~~~~~~~~--------------------------------- 341 (401)
T 4aez_A 301 DAGS-QVTSLIWS-----PHSKEIMSTHGFPDNNLSIWSYSSSGLTK--------------------------------- 341 (401)
T ss_dssp ECSS-CEEEEEEC-----SSSSEEEEEECTTTCEEEEEEEETTEEEE---------------------------------
T ss_pred eCCC-cEEEEEEC-----CCCCeEEEEeecCCCcEEEEecCCcccee---------------------------------
Confidence 3443 35566666 8999999954 89999999975542110
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
...+.+|...|.+++|+|||.+| ++++.|+.+++|++.+
T Consensus 342 --------------------~~~~~~h~~~v~~~~~s~dg~~l-~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 342 --------------------QVDIPAHDTRVLYSALSPDGRIL-STAASDENLKFWRVYD 380 (401)
T ss_dssp --------------------EEEEECCSSCCCEEEECTTSSEE-EEECTTSEEEEEECCC
T ss_pred --------------------EEEecCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEECCC
Confidence 00234678899999999999999 9999999999999864
No 49
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.2e-31 Score=266.87 Aligned_cols=240 Identities=19% Similarity=0.219 Sum_probs=198.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|+|++|++|+.|++|+|||+.+++.+..+.+|...+.++.|+++
T Consensus 65 ~~~v--~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~------------------------ 118 (319)
T 3frx_A 65 SHIV--QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK------------------------ 118 (319)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred cccE--EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC------------------------
Confidence 3567 55699999999999999999999999999999988877655554444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC------CCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH------GSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~------g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+.+|++|+.||.|++||+... .+..+ .+|...|.++.|+|. +..+++++.|+.|++||+.+++....+.
T Consensus 119 ---~~~l~s~s~D~~i~vwd~~~~-~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 193 (319)
T 3frx_A 119 ---ASMIISGSRDKTIKVWTIKGQ-CLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193 (319)
T ss_dssp ---SCEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ---CCEEEEEeCCCeEEEEECCCC-eEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec
Confidence 778999999999999999754 44344 479999999999985 4489999999999999999999999999
Q ss_pred cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
+|...|.+++|+|++++|++++ |.|++||+.+++.+..+.. ...|.+++|+|++.++++++ ++.+++|++.....
T Consensus 194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~~ 270 (319)
T 3frx_A 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQYL 270 (319)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCee
Confidence 9999999999999999999998 8999999999999888875 46899999999999988765 55699999987643
Q ss_pred ccceeeeee------cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 235 QSASCVLAM------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 235 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
. ..+.. ......+..++|+ |+|++|++|+.||.|+|||+.++
T Consensus 271 ~---~~~~~~~~~~~~~~~~~v~~~~~s-----pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 271 V---DDLRPEFAGYSKAAEPHAVSLAWS-----ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp E---EEECCCCTTCCGGGCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEEC
T ss_pred e---eccCccccccccCcCcceeEEEEC-----CCCCEEEEeecCceEEEEEEeec
Confidence 2 11110 0112234456676 99999999999999999998764
No 50
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=285.01 Aligned_cols=257 Identities=12% Similarity=0.166 Sum_probs=194.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc-----------EEEEecccccccccccccccccccccccceeeE
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (630)
.++| .+++|+|+|++||+|+.||.|+||++.++. ....+.+|........ .......++++
T Consensus 28 ~~~V--~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~V~~l 99 (447)
T 3dw8_B 28 ADII--STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLK------SLEIEEKINKI 99 (447)
T ss_dssp GGSE--EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGG------TEEECCCCCEE
T ss_pred cCcE--EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccc------cccccCceEEE
Confidence 3678 566999999999999999999999998877 4666665541110000 00002457788
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCCeee---------------------------------------EEc
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---------------------------------------WRL 112 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~---------------------------------------~~~ 112 (630)
.|.+... ...|++++.||.|++||+.++... ..+
T Consensus 100 ~~~~~~~-------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 100 RWLPQKN-------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp EECCCCS-------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred EEcCCCC-------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 8877631 268999999999999999875432 133
Q ss_pred cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeE-------EeecCCCCeEEEEEccCC-CEEEEeC--CeE
Q 006808 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLG-------KFRASTKGISCMAVSSDG-KMLATAA--GQL 181 (630)
Q Consensus 113 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~-------~~~~~~~~v~~l~~~p~~-~~l~~~~--g~i 181 (630)
..+|...|.+++|+|++++|++| .|+.|++||+.+ ++.+. .+..|...|.+++|+|++ .+|++++ |.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 46899999999999999999998 799999999984 44444 255788899999999998 8999988 899
Q ss_pred EEEECCCCce----eeEeecCCC------------CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC-Cccccceeeeeec
Q 006808 182 KTFNCSDHKK----MQKFSGHPG------------AVRFMTFSDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAME 244 (630)
Q Consensus 182 ~lwd~~~~~~----~~~~~~h~~------------~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~ 244 (630)
++||+++++. +..+.+|.. .|.+++|+|++++|++++ . +.|++||+.. ++.. ..+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~-----~~~~ 324 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPV-----ETYQ 324 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCS-----CCEE
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccc-----ceee
Confidence 9999999886 778888876 899999999999999877 5 9999999987 4422 1222
Q ss_pred CCceee---------------eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 245 HPAVFM---------------DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 245 ~~~~~~---------------~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.+.... ..++|+ |++.+|++|+.||.|++||+.+++.+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s-----~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWN-----GSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEEC-----TTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccccccccccccceEEEEC-----CCCCEEEEeccCCEEEEEEcCCCcce
Confidence 222111 125665 99999999999999999999888654
No 51
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-32 Score=308.94 Aligned_cols=197 Identities=14% Similarity=0.144 Sum_probs=166.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+||+..+++....+. | ...+.+++|.+
T Consensus 17 ~~~V--~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~------------------~-~~~V~~l~fsp------- 68 (902)
T 2oaj_A 17 SSKP--IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE------------------D-RSAIKEMRFVK------- 68 (902)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS------------------S-CCCEEEEEEET-------
T ss_pred CCCc--EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC------------------C-CCCEEEEEEcC-------
Confidence 4578 566999999999999999999999998776654432 1 23577888876
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee----------
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---------- 152 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~---------- 152 (630)
+.+|++++.|+.|++||+.+++.+..+. |...|++++|+|++++|++|+.||+|++||+.++++.
T Consensus 69 ---g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 69 ---GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp ---TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred ---CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 3379999999999999999998876663 7789999999999999999999999999999988764
Q ss_pred -EEeecCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecC------------------CCCeEEEEEeeC
Q 006808 153 -GKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------------------PGAVRFMTFSDN 210 (630)
Q Consensus 153 -~~~~~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------------~~~v~~l~~sp~ 210 (630)
..+.+|..+|.+++|+|+ +..+++|+ |.| +||+++++.+..+.+| ...|++++|+|+
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 234568889999999996 46788877 899 9999999988888765 467999999999
Q ss_pred CcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 211 GKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 211 ~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
|.+|++++ .|+.|++||+.+++.
T Consensus 223 g~~lasgs-~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 223 SLHIITIH-EDNSLVFWDANSGHM 245 (902)
T ss_dssp SSEEEEEE-TTCCEEEEETTTCCE
T ss_pred CCEEEEEE-CCCeEEEEECCCCcE
Confidence 99999988 699999999987653
No 52
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.8e-31 Score=276.01 Aligned_cols=274 Identities=15% Similarity=0.252 Sum_probs=221.2
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++||++ ++||+|. |++|+|||..+|++...+..+ +| ...+++++|.+. +.+|
T Consensus 110 ~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~---------------~~-~~~V~sv~fspd---------g~~l 162 (420)
T 4gga_A 110 LVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQME---------------QP-GEYISSVAWIKE---------GNYL 162 (420)
T ss_dssp CEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECC---------------ST-TCCEEEEEECTT---------SSEE
T ss_pred eEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEec---------------CC-CCcEEEEEECCC---------CCEE
Confidence 3599976 4888776 899999999999988776522 11 235677888764 7889
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEEEc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~ 168 (630)
++|+.||.|++||+.+++.+..+ .+|...+.++.++ +..+++|+.|+.+++||.... ..+..+.+|...+..+.|+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999999999988666 5799999998875 679999999999999998864 5567789999999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCc----eeeEeecCCCCeEEEEEeeCCcEEEE--EeeCCCeEEEEEcCCCccccceee
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGKYVLS--SAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~~~l~~--~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
|++.++++++ +.+++|+..+++ .+..+..|...|.+++|+|.+..+++ +++.|++|++||+.++...
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----- 314 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----- 314 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-----
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-----
Confidence 9999999988 899999998765 35567789999999999997765443 2346899999999988633
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
..+.....+..+. +. |++..+++++ .||.|+|||+.+++.+.
T Consensus 315 ~~~~~~~~v~~~~-~~-----~~~~~lv~~sg~~d~~I~iwd~~~~~~v~------------------------------ 358 (420)
T 4gga_A 315 SAVDAHSQVCSIL-WS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA------------------------------ 358 (420)
T ss_dssp EEEECSSCEEEEE-EE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE------------------------------
T ss_pred eeeccccceeeee-ec-----CCCCeEEEEEecCCCEEEEEECCCCcEEE------------------------------
Confidence 3344444454444 44 7888887765 68999999987654321
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.+|.+.|++++|+|||.+| +|||.|+++++|++.
T Consensus 359 -------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 359 -------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF 394 (420)
T ss_dssp -------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred -------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence 334788999999999999999 999999999999984
No 53
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=277.08 Aligned_cols=300 Identities=12% Similarity=0.064 Sum_probs=228.1
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+| +|++||+|+.||.|+|||+.++.....+........ .... ..+| ...+.++.|.+.+
T Consensus 43 ~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~---~~~~-~~~v~~~~~~~~~---- 111 (408)
T 4a11_B 43 GGGI--NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSI-GRDH---PDVH-RYSVETVQWYPHD---- 111 (408)
T ss_dssp SSCE--EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEE-CTTC---TTCC-SSCEEEEEECTTC----
T ss_pred CCcE--EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccc-cccc---cccC-CCcEEEEEEccCC----
Confidence 5688 5669999 999999999999999999998765543321100000 0000 0123 3467888888754
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC---CCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
+.+|++++.+|.|++||+.+++....+. +...+.++.|+|. +.++++++.|+.|++||+.+++.+..+..|
T Consensus 112 ----~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 112 ----TGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp ----TTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC
T ss_pred ----CcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC
Confidence 6789999999999999999998876663 7788999999984 448999999999999999999999999999
Q ss_pred CCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCc-eeeEe---------------ecCCCCeEEEEEeeCCcEEEEEee
Q 006808 159 TKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHK-KMQKF---------------SGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 159 ~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~-~~~~~---------------~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
...|.+++|+|++. ++++++ |.|++||++++. .+..+ .+|...|.+++|+|++++|++++
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 264 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG- 264 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec-
Confidence 99999999999998 477776 899999998765 33333 57889999999999999999988
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeec
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (630)
.|+.|++||+.+++....................... ..+..+++++.+|.|++||+.+++.+.
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~----------- 328 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-----GCSSEFVFVPYGSTIAVYTVYSGEQIT----------- 328 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-----SSSSCEEEEEETTEEEEEETTTCCEEE-----------
T ss_pred CCCeEEEEECCCCccceeccccccccccccceeEEec-----CCCceEEEEecCCEEEEEECcCCccee-----------
Confidence 6999999999987643111101111111122222222 345667778889999999987654321
Q ss_pred cCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+.+|...|.+++|+|+|.+| ++++.|+.+++|++
T Consensus 329 --------------------------------------------~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 329 --------------------------------------------MLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWVP 363 (408)
T ss_dssp --------------------------------------------EECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEEE
T ss_pred --------------------------------------------eeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEeC
Confidence 223677889999999999999 99999999999998
Q ss_pred cc
Q 006808 380 QN 381 (630)
Q Consensus 380 ~~ 381 (630)
..
T Consensus 364 ~~ 365 (408)
T 4a11_B 364 SL 365 (408)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 54
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.8e-31 Score=269.16 Aligned_cols=236 Identities=13% Similarity=0.187 Sum_probs=196.5
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc------EEEEecccccccccccccccccccccccceeeEEecccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
..| .+++|+|+|.+||+|+.|+.+++|++.... ....+.+|.. .+.++.|.+.
T Consensus 107 ~~v--~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~- 165 (354)
T 2pbi_B 107 TWV--MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN------------------YLSACSFTNS- 165 (354)
T ss_dssp SCC--CEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS------------------CEEEEEECSS-
T ss_pred CCE--EEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC------------------cEEEEEEeCC-
Confidence 456 566999999999999999999999986432 2223332322 4556666654
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
+..|++|+.||.|++||+.+++.+..+ .+|...|.+++|+| +|++|++|+.||+|++||+++++++..+
T Consensus 166 --------~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 166 --------DMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp --------SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred --------CCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 667999999999999999999988666 47999999999987 5789999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|...|.+++|+|++.+|++++ ++|++||+++++.+..+..+ ...+.+++|+|++++|++++ .|+.|++||+.+
T Consensus 237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~ 315 (354)
T 2pbi_B 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK 315 (354)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Confidence 99999999999999999999998 89999999998877766543 35789999999999999988 699999999988
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
+... ..+..+...+.++.|+ |+|.+|++|+.||.|+||+
T Consensus 316 ~~~~-----~~l~~h~~~v~~l~~s-----pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 GSRV-----SILFGHENRVSTLRVS-----PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSEE-----EEECCCSSCEEEEEEC-----TTSSCEEEEETTSEEEEEC
T ss_pred CceE-----EEEECCCCcEEEEEEC-----CCCCEEEEEcCCCCEEecC
Confidence 7633 2333344456667777 9999999999999999996
No 55
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-31 Score=275.06 Aligned_cols=248 Identities=16% Similarity=0.197 Sum_probs=198.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc-------EEEEecccccccccccccccccccccccceeeEEecc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
...| .+++|+|+|++||+|+.|+.++||++.+.. ....+.+|.+. +.++.|.+
T Consensus 108 ~~~v--~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~------------------v~~~~~~~ 167 (380)
T 3iz6_a 108 CPWV--MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY------------------ASSCQYVP 167 (380)
T ss_dssp CTTC--CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC------------------CCCCBCCS
T ss_pred CCCE--EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc------------------eEEEEEec
Confidence 3467 556999999999999999999999987542 12223333333 33445554
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEc----cCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCC-CC
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TG 149 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~----~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~-~~ 149 (630)
.+ +..|++|+.|+.|++||+.+++.+..+ ..+|...|.+++|++ ++++|++|+.|++|++||++ .+
T Consensus 168 ~~--------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 168 DQ--------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp SS--------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred CC--------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 43 556999999999999999999877544 257999999999987 88999999999999999998 55
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-------CCeEEEEEeeCCcEEEEEeeC
Q 006808 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~l~~~~~~ 220 (630)
+++..+.+|...|.+++|+|++.+|++++ |+|++||+++++.+..+..+. ..|++++|+|+|++|++++ .
T Consensus 240 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~ 318 (380)
T 3iz6_a 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-S 318 (380)
T ss_dssp CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-T
T ss_pred cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-C
Confidence 78889999999999999999999999998 899999999999888776543 2489999999999999987 6
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
|+.|++||+..++....... ....+...+.++.|+ |+|.+|++|+.||.|+||++...+
T Consensus 319 dg~i~vwd~~~~~~~~~~~~-~~~~h~~~v~~l~~s-----~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 319 NGDCYVWDTLLAEMVLNLGT-LQNSHEGRISCLGLS-----SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TSCEEEEETTTCCEEEEECC-SCSSCCCCCCEEEEC-----SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCEEEEECCCCceEEEEec-ccCCCCCceEEEEEC-----CCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999987763310000 112344556777777 999999999999999999987654
No 56
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-31 Score=293.97 Aligned_cols=313 Identities=15% Similarity=0.148 Sum_probs=237.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCC----cEEEEecccccccccccccccccccccccceeeEEeccc-c
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-D 77 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~-~ 77 (630)
.+.| .+++|+|+|++||+++ ++.|+||++.++ +....+.+|... .+++++|.|. +
T Consensus 18 ~~~v--~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~-----------------~v~~~~~sp~~~ 77 (615)
T 1pgu_A 18 RNFT--THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSS-----------------VVTTVKFSPIKG 77 (615)
T ss_dssp TTCC--CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTS-----------------CEEEEEECSSTT
T ss_pred cCce--eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCc-----------------eEEEEEECcCCC
Confidence 4667 4559999999999998 789999999998 788888755544 1455666551 1
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCC--------eeeEEccCCCCCCEEEEEEecCCCEEEEEeCC----CcEEEEe
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAG--------QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEID 145 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----g~v~iwd 145 (630)
+.+|++|+.+|.|++||+.++ .....+ .+|..+|.+++|+|++++|++++.+ +.|++||
T Consensus 78 --------~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d 148 (615)
T 1pgu_A 78 --------SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 148 (615)
T ss_dssp --------CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred --------CCEEEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence 788999999999999999755 444343 4699999999999999999999987 6888888
Q ss_pred CCCCceeEEeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEeecCCC---CeEEEEEeeC-CcEEEEEe
Q 006808 146 PLTGSLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPG---AVRFMTFSDN-GKYVLSSA 218 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~~~h~~---~v~~l~~sp~-~~~l~~~~ 218 (630)
.++.+..+..|...|.+++|+|++. ++++++ +.|++||+.+++.+..+.+|.. .|++++|+|+ +++|++++
T Consensus 149 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 149 --SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp --TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred --CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence 6788889999999999999999997 677777 8999999999999999999999 9999999999 99999988
Q ss_pred eCCCeEEEEEcCCCccccceeeeee-----cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 219 VGERYIALWRTDGVKKQSASCVLAM-----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.|+.|++||+.+++.. ..+ .|.. .+..+.| + ++.+|++++.||.|++||+.+++.+......
T Consensus 227 -~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~-~v~~~~~-----~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 227 -SDRKISCFDGKSGEFL-----KYIEDDQEPVQG-GIFALSW-----L-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp -TTCCEEEEETTTCCEE-----EECCBTTBCCCS-CEEEEEE-----S-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred -CCCeEEEEECCCCCEe-----EEecccccccCC-ceEEEEE-----c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 6999999999887643 233 3443 3445555 2 6899999999999999999988766544322
Q ss_pred -----eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccc
Q 006808 294 -----KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ 368 (630)
Q Consensus 294 -----~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~ 368 (630)
...... .+ +++. .+++++.++.+++++.. ....+..+.+|...|.+++| |+ + +++
T Consensus 294 ~~~~~~~~~~~--~~-~~~~----~l~~~~~~g~i~~~d~~--------~~~~~~~~~~~~~~v~~~~~-~~---l-~~~ 353 (615)
T 1pgu_A 294 KQQLGNQQVGV--VA-TGNG----RIISLSLDGTLNFYELG--------HDEVLKTISGHNKGITALTV-NP---L-ISG 353 (615)
T ss_dssp TTCGGGCEEEE--EE-EETT----EEEEEETTSCEEEEETT--------EEEEEEEECCCSSCEEEEET-TT---T-EEE
T ss_pred CCcccCceeEE--Ee-CCCC----eEEEEECCCCEEEEECC--------CCcEEEEEeCCCCCEEEEEe-cC---c-EEE
Confidence 111111 02 2333 78888888876665422 12333455566666666666 55 3 555
Q ss_pred cceecccccee
Q 006808 369 SLLKSKRGRYV 379 (630)
Q Consensus 369 s~d~~~~~w~~ 379 (630)
+.|+.+++|++
T Consensus 354 ~~dg~i~~w~~ 364 (615)
T 1pgu_A 354 SYDGRIMEWSS 364 (615)
T ss_dssp ETTSCEEETTT
T ss_pred CCCCeEEEEEc
Confidence 55666666654
No 57
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-31 Score=262.68 Aligned_cols=272 Identities=19% Similarity=0.219 Sum_probs=220.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++| |++++||+|+.||.|+|||+.++.....+..|... +.++.|.+.
T Consensus 18 ~~~v--~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~------------------v~~~~~~~~------ 70 (313)
T 3odt_A 18 DQDV--RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGF------------------LNSVCYDSE------ 70 (313)
T ss_dssp SSCE--EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSC------------------EEEEEEETT------
T ss_pred CCCc--EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCcc------------------EEEEEECCC------
Confidence 4678 55599 99999999999999999999999888877755444 445555553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC---eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~---~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+.++++|+.+|.|++|++... +....+ .+|...|.++.| +++++++++.||.|++|| .++....+..|.
T Consensus 71 ---~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~ 142 (313)
T 3odt_A 71 ---KELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN 142 (313)
T ss_dssp ---TTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCS
T ss_pred ---CCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCC
Confidence 788999999999999998765 333333 579999999999 577999999999999999 778888899999
Q ss_pred CCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeec-CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 160 ~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
..+.+++|.| ++.++++++ |.|++|| .++....+.. |...+.+++|+|++. +++++ .|+.|++||+.+++..
T Consensus 143 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 143 ASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHTGDVL 218 (313)
T ss_dssp SCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTTCCEE
T ss_pred CceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCchhhh
Confidence 9999999998 889999888 8999999 4566777776 899999999999998 77776 6999999999987633
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (630)
..+..+...+..+.|+ |++ .|++++.||.|++||+.+++.+.
T Consensus 219 -----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~dg~v~iwd~~~~~~~~--------------------------- 260 (313)
T 3odt_A 219 -----RTYEGHESFVYCIKLL-----PNG-DIVSCGEDRTVRIWSKENGSLKQ--------------------------- 260 (313)
T ss_dssp -----EEEECCSSCEEEEEEC-----TTS-CEEEEETTSEEEEECTTTCCEEE---------------------------
T ss_pred -----hhhhcCCceEEEEEEe-----cCC-CEEEEecCCEEEEEECCCCceeE---------------------------
Confidence 3333344456667776 888 68999999999999986653211
Q ss_pred hccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.+..|...|.+++|+|+|.+ ++++.|+.+++|++.+
T Consensus 261 ----------------------------~~~~~~~~i~~~~~~~~~~~--~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 261 ----------------------------VITLPAISIWSVDCMSNGDI--IVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ----------------------------EEECSSSCEEEEEECTTSCE--EEEETTSCEEEEESCG
T ss_pred ----------------------------EEeccCceEEEEEEccCCCE--EEEeCCCcEEEEeCCC
Confidence 22356668999999999995 5688899999999864
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=286.75 Aligned_cols=316 Identities=12% Similarity=0.129 Sum_probs=221.9
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCC---CcE---EEEecccccccccccccccccccccccceeeEEecc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK---GQV---QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~---~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
.++| .+++|+| +|++||+|+.||+|+|||+.+ +.. ...+ +| ...+.+++|.+
T Consensus 63 ~~~V--~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~------------------~h-~~~v~~~~~~~ 121 (437)
T 3gre_A 63 PNSI--TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY------------------DC-SSTVTQITMIP 121 (437)
T ss_dssp TSCE--EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE------------------EC-SSCEEEEEECT
T ss_pred CCce--EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec------------------cC-CCCEEEEEEeC
Confidence 4688 5569999 999999999999999999876 331 1111 11 33577888876
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEcc---CCeeeEEc--------c-CC--CCCCEEEEE--EecCCCEEEEEeCCC
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVS---AGQLKWRL--------S-DC--HPGGVSAIS--FATHGSCIYSAGADG 139 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~---~~~~~~~~--------~-~~--h~~~v~~~~--~s~~g~~l~s~~~dg 139 (630)
. +.+|++|+.||.|++||+. +++..... . .. +...+.++. +++++.+|++++.|+
T Consensus 122 ~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 192 (437)
T 3gre_A 122 N---------FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192 (437)
T ss_dssp T---------SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred C---------CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence 4 7789999999999999994 44333211 1 11 566777777 557899999999999
Q ss_pred cEEEEeCCCCceeEEeec--CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEee----C
Q 006808 140 MVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSD----N 210 (630)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp----~ 210 (630)
.|++||+++++++..+.. |...|++++|+|++.+|++++ |.|++||+++++++..+. .|..+|++++|+| +
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence 999999999999999998 788999999999999999998 899999999999988886 7888999996654 6
Q ss_pred CcEEEEEeeCCCeEEEEEcCCCccccceeeeeec------------------------CCceeeeeEEecCCccCCCCCE
Q 006808 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAME------------------------HPAVFMDCRCIDNGGVDDAGLY 266 (630)
Q Consensus 211 ~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 266 (630)
+.+|++++ .|+.|++||+.+++.. ..+... .+...+.+++|+ ++.+
T Consensus 273 ~~~l~s~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~------~~~~ 342 (437)
T 3gre_A 273 SVIVVGGS-SKTFLTIWNFVKGHCQ---YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS------NDKI 342 (437)
T ss_dssp EEEEEEES-TTEEEEEEETTTTEEE---EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE------TTEE
T ss_pred ccEEEEEc-CCCcEEEEEcCCCcEE---EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC------CceE
Confidence 77888877 6999999999887633 111100 022234445553 5689
Q ss_pred EEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEE-cCccCceeeEE
Q 006808 267 VLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSFQKI 345 (630)
Q Consensus 267 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~-g~~~~~~~~~~ 345 (630)
|++|+.||.|++||+.+++.+............ +.+. .... ........ .......+...
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDV---FIPT-----------QVTA-----NLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEEECC--CCCE---EEEE-----------EEET-----TEEEEEEECC----------
T ss_pred EEecCCCCeEEEEECCCcccceEEecccccCce---EEEE-----------Eeec-----ceEEEEEecccccccccCcc
Confidence 999999999999999998776544322100000 0000 0000 00110000 01111222344
Q ss_pred eccCCCcEEEeecCC--cceeeccccceeccccce
Q 006808 346 LVNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 346 ~~h~~~v~~~~~s~d--g~~l~~s~s~d~~~~~w~ 378 (630)
..|...|.+++|+++ +.+| +||+.||.+++|+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l-~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLL-VACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEE-EEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEE-EEEcCCceEEEeC
Confidence 569999999999998 7788 9999999999995
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.8e-31 Score=264.54 Aligned_cols=279 Identities=12% Similarity=0.179 Sum_probs=220.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++|++++ ||.|++||+.++.....+.... .......+.++.|.+.
T Consensus 51 ~~~v--~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~------ 108 (337)
T 1gxr_A 51 GEVV--CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD-------------CLNRDNYIRSCKLLPD------ 108 (337)
T ss_dssp SSCC--CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE-------------CSCTTSBEEEEEECTT------
T ss_pred CCce--EEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc-------------ccCCCCcEEEEEEcCC------
Confidence 4678 5559999999999999 9999999998776432221000 0011335677777764
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+.+|++++.+|.|++||+.+++. .......|...|.+++|+|+++++++++.||.|++||+.+++.+..+..|...
T Consensus 109 ---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~ 185 (337)
T 1gxr_A 109 ---GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185 (337)
T ss_dssp ---SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred ---CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCc
Confidence 77899999999999999998873 12333478899999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+.+++|+|++.+|++++ |.|++||+++++.+..+. |...+.+++|+|+++++++++ .++.|++|++.+.+..
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~---- 259 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKY---- 259 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEE----
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeE----
Confidence 99999999999999987 899999999998887775 788999999999999999987 6999999999887532
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc--CceeEEeeccCCCcccccchhhhhhhc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT--KATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
....+...+..+.|+ |++.+|++++.||.|++|++.+++.+... ......+. ++++++ .++++
T Consensus 260 --~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~----~s~~~~----~l~~~ 324 (337)
T 1gxr_A 260 --QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD----ISVDDK----YIVTG 324 (337)
T ss_dssp --EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE----ECTTSC----EEEEE
T ss_pred --EEcCCccceeEEEEC-----CCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEE----ECCCCC----EEEEe
Confidence 233334445666666 89999999999999999999988766432 22222222 577776 88888
Q ss_pred cccccccCCc
Q 006808 318 KLQDIVKPAS 327 (630)
Q Consensus 318 ~~d~~~~~~~ 327 (630)
+.++.+++|+
T Consensus 325 ~~dg~i~iw~ 334 (337)
T 1gxr_A 325 SGDKKATVYE 334 (337)
T ss_dssp ETTSCEEEEE
T ss_pred cCCCeEEEEE
Confidence 8888666543
No 60
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=267.84 Aligned_cols=243 Identities=11% Similarity=0.113 Sum_probs=184.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCC-------CcEEEEecccccccccccccccccccccccceeeEEecc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
.++| .+++|+|+|++||+|+.|++|+|||+.. ...+..+.+|... +.+++|.|
T Consensus 58 ~~~v--~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~------------------V~~v~~sp 117 (330)
T 2hes_X 58 KKAI--RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE------------------VKGVAWSN 117 (330)
T ss_dssp CSCE--EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C------------------EEEEEECT
T ss_pred cCCE--EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc------------------EEEEEECC
Confidence 3568 5559999999999999999999999853 3445555555443 45566655
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCC----eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-- 149 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~----~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-- 149 (630)
. +.+|++|+.||.|++||+... +++ ....+|...|.+++|+|++.+|++++.|++|++||+.++
T Consensus 118 ~---------g~~las~s~D~~v~iwd~~~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 118 D---------GYYLATCSRDKSVWIWETDESGEEYECI-SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp T---------SCEEEEEETTSCEEEEECCTTCCCCEEE-EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE
T ss_pred C---------CCEEEEEeCCCEEEEEeccCCCCCeEEE-EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe
Confidence 3 788999999999999999532 333 334589999999999999999999999999999998776
Q ss_pred ceeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCC--------ceeeEeec-CCCCeEEEEEeeCCcEEEE
Q 006808 150 SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--------KKMQKFSG-HPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~--------~~~~~~~~-h~~~v~~l~~sp~~~~l~~ 216 (630)
+++..+.+|...|.+++|+|+ +.+|++++ ++|++||+.++ .+...+.+ |...|.+++|++++ +|++
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s 266 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS 266 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEE
T ss_pred eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEE
Confidence 678889999999999999998 67888887 89999998764 34445554 89999999999765 7777
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC--CCCEEEEEecCCcEEEEEcCC
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD--AGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~ 283 (630)
++ .|+.|++|+...+... ........|....+.++.|+ | ++.+|++|+.||.|+||++..
T Consensus 267 ~~-~dg~v~iw~~~~~~~~-~~~~~~~~h~~~~v~~v~~~-----~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 267 VG-ADGVLAVYEEVDGEWK-VFAKRALCHGVYEINVVKWL-----ELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EE-TTSCEEEEEEETTEEE-EEEEESCTTTTSCEEEEEEC----------CCEEEEETTSEEEEEEC--
T ss_pred Ee-CCCEEEEEEcCCCceE-EEeccccccccceEEEEEEe-----cCCCceEEEEecCCCcEEEEEecc
Confidence 77 6999999998766321 00111223444355666666 6 688999999999999999754
No 61
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-31 Score=267.27 Aligned_cols=252 Identities=15% Similarity=0.206 Sum_probs=194.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.|++|+||+..++. ++..+.+|... +.+++|.|.
T Consensus 61 ~~~v--~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~------------------v~~v~~sp~---- 116 (345)
T 3fm0_A 61 QRTV--RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE------------------VKSVAWAPS---- 116 (345)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC------------------EEEEEECTT----
T ss_pred CCcE--EEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC------------------ceEEEEeCC----
Confidence 3567 555999999999999999999999988764 45666655544 445555553
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEee
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR 156 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~ 156 (630)
+.+|++|+.||.|++||+.++.. ......+|...|.+++|+|++++|++++.|++|++||+.+++ +...+.
T Consensus 117 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 117 -----GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp -----SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred -----CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec
Confidence 78899999999999999987642 224446899999999999999999999999999999998775 456788
Q ss_pred cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC---------------ceeeEeec-CCCCeEEEEEeeCCcEEEEEe
Q 006808 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---------------KKMQKFSG-HPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~---------------~~~~~~~~-h~~~v~~l~~sp~~~~l~~~~ 218 (630)
+|...|.+++|+|+|++|++++ ++|++|+.... +++..+.+ |...|.+++|+|++..|++++
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC 271 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence 9999999999999999999998 89999996321 23444544 888999999999999999988
Q ss_pred eCCCeEEEEEcCCCccccc-ee---eeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccccc
Q 006808 219 VGERYIALWRTDGVKKQSA-SC---VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
.|+.|++|+......... .. ......+...+.++.|+ |++ .+|++|+.||.|++|+..+.+.+..
T Consensus 272 -~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~-----p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 272 -GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN-----PKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp -TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEEECC------
T ss_pred -CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe-----CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 699999999876532110 00 11112334456666776 877 5999999999999999988776543
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4e-31 Score=279.77 Aligned_cols=304 Identities=12% Similarity=0.190 Sum_probs=232.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
++++++++|++|+.||+|++||+.+++.+..+.+|...+ .++.|.+ ...+++
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V------------------~~l~~~~----------~~~l~s 178 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV------------------WALKYAH----------GGILVS 178 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE------------------EEEEECS----------TTEEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCE------------------EEEEEcC----------CCEEEE
Confidence 345577899999999999999999999999888665544 4555543 237999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEEeCCCcEEEEeCCCCce------------------
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLTGSL------------------ 151 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~v~iwd~~~~~~------------------ 151 (630)
|+.||.|++||+.+++.+..+ .+|...|.+++|+ +++.++++++.||+|++||+.++..
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 999999999999999988665 4799999999998 4778999999999999999987653
Q ss_pred -----eEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 152 -----LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 152 -----~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
+..+.+|...+.++ +|++.++++++ |.|++||+.+++.+..+.+|...|.+++|+|+++++++++ .|+.|
T Consensus 258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i 334 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTI 334 (464)
T ss_dssp GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCE
T ss_pred CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcE
Confidence 45667788888776 67788999988 8999999999999999999999999999999999999988 69999
Q ss_pred EEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc--eeEEeeccCC
Q 006808 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA--TKILSSSEDV 302 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~ 302 (630)
++||+.+++. ...+..+...+..+.++ +.+|++++.||.|++||+.++........ ......
T Consensus 335 ~vwd~~~~~~-----~~~~~~h~~~v~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---- 398 (464)
T 3v7d_B 335 RIWDLENGEL-----MYTLQGHTALVGLLRLS-------DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT---- 398 (464)
T ss_dssp EEEETTTTEE-----EEEECCCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEE----
T ss_pred EEEECCCCcE-----EEEEeCCCCcEEEEEEc-------CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEE----
Confidence 9999998763 33444444455566653 68999999999999999988765433211 111111
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeE-EeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK-ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
++++++ .+++++ ++.+++|+ ......+.. +..|...|.+++|+ +..++++++.|+.+.+|-
T Consensus 399 ~~~~~~----~l~~~~-dg~i~iwd--------~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 399 FYVSDN----ILVSGS-ENQFNIYN--------LRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEECSS----EEEEEE-TTEEEEEE--------TTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred EEeCCC----EEEEec-CCeEEEEE--------CCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEE
Confidence 455555 666666 77655543 222222322 44688899999997 444436667676665554
No 63
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-30 Score=264.96 Aligned_cols=243 Identities=13% Similarity=0.170 Sum_probs=192.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...+.++.|+|+
T Consensus 76 ~~~V--~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~------------------------ 129 (343)
T 2xzm_R 76 NHFV--SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD------------------------ 129 (343)
T ss_dssp SSCE--EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS------------------------
T ss_pred CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC------------------------
Confidence 3567 55599999999999999999999999999999988877665554444444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEc--cCCCCCCEEEEEEecCC----------CEEEEEeCCCcEEEEeCCCCc
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG----------SCIYSAGADGMVCEIDPLTGS 150 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~--~~~h~~~v~~~~~s~~g----------~~l~s~~~dg~v~iwd~~~~~ 150 (630)
+.+|++|+.||.|++||+...... .. ..+|...|.+++|+|++ .+|++++.|+.|++|| ..++
T Consensus 130 ---~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~ 204 (343)
T 2xzm_R 130 ---NRQILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQ 204 (343)
T ss_dssp ---TTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTE
T ss_pred ---CCEEEEEcCCCEEEEEeccCCcee-eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCc
Confidence 778999999999999999854332 22 23688999999999987 7899999999999999 4577
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC-CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
....+.+|...|.+++|+|+|++|++++ |.|++||+.+ ......+. +...|.+++|+|++.++++ + .|+.|++|
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~-~-~d~~v~iw 281 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAV-G-TDQGVKIF 281 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEE-E-ESSCEEEE
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEE-E-CCCCEEEE
Confidence 7788999999999999999999999998 8999999954 44444443 5667999999999987764 4 38889999
Q ss_pred EcCCCccccceeeeee---------cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 228 RTDGVKKQSASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
++.+.+... .+.+.. ..+...+..+.|+ |+|.+|++|+.||.|++|++.++.
T Consensus 282 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 282 NLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWN-----ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp ESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEEC-----SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEEC-----CCCCeEEEecCCceEEEEEEEccC
Confidence 998765431 011110 0223345666776 999999999999999999987653
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-31 Score=270.69 Aligned_cols=242 Identities=12% Similarity=0.099 Sum_probs=186.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.| .+++|+|++.+ ++++.||+|+|||+.+++........ ..+| ...+.+++|.+.
T Consensus 95 ~~V--~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~-------------~~~h-~~~V~~v~~spd------- 150 (357)
T 4g56_B 95 AGV--TDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFA-------------KYEH-DDIVKTLSVFSD------- 150 (357)
T ss_dssp SCE--EEEEEETTTEE-EEEETTSCEEEC--------CCCCEE-------------ECCC-SSCEEEEEECSS-------
T ss_pred CCE--EEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeec-------------cCCC-CCCEEEEEECCC-------
Confidence 457 56699999865 46778999999999888754322100 0123 235667777664
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEee--cCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR--ASTK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~ 160 (630)
+.+|++|+.+|.|++||+.+++.+..+ .+|...|++++|+|++. ++++++.||+|++||++++++...+. .+..
T Consensus 151 --g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~ 227 (357)
T 4g56_B 151 --GTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT 227 (357)
T ss_dssp --SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence 778999999999999999999988666 47999999999999875 68999999999999999998776654 4566
Q ss_pred CeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.+.+++|+|+ +.+|++|+ +.|++||+++++.+.++.+|...|++++|+|++. +|++++ .|++|+|||+.+++.
T Consensus 228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~~~-- 304 (357)
T 4g56_B 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFSEV-- 304 (357)
T ss_dssp CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSCEE--
T ss_pred cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCCcE--
Confidence 8999999997 46777776 8999999999999999999999999999999985 566666 799999999988763
Q ss_pred ceeeeeecCCceeeeeEEecCCccCC-CCCEEEEEecCCcEEEEEcCCc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
...+.|... +..++|+ | ++.+|++++.||.|++|++.+.
T Consensus 305 ---~~~~~H~~~-V~~vafs-----P~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 305 ---FRDLSHRDF-VTGVAWS-----PLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ---EEECCCSSC-EEEEEEC-----SSSTTEEEEEETTSCEEEEECC--
T ss_pred ---eEECCCCCC-EEEEEEe-----CCCCCEEEEEcCCCeEEEEECCCC
Confidence 334455554 5566666 7 7899999999999999998654
No 65
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.7e-30 Score=256.74 Aligned_cols=274 Identities=15% Similarity=0.242 Sum_probs=216.3
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++||+++ +||+|. |++|+|||+.+|+++..+..+ +| ...+++++|.+. +.+|
T Consensus 30 ~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~---------------~~-~~~V~~v~~~~~---------~~~l 82 (318)
T 4ggc_A 30 LVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQME---------------QP-GEYISSVAWIKE---------GNYL 82 (318)
T ss_dssp CEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECC---------------ST-TCCEEEEEECTT---------SSEE
T ss_pred EEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEec---------------CC-CCeEEEEEECCC---------CCEE
Confidence 35999986 777765 899999999999998877532 11 234667777665 7889
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEEEc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~ 168 (630)
++|+.||.|++|++.+++.+..+ .+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+.++.++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999999999988666 479888887665 5679999999999999998865 5566788899999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCce----eeEeecCCCCeEEEEEeeCCcEEE--EEeeCCCeEEEEEcCCCccccceee
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVL--SSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~--~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
+++.++++++ +.|++||+.+++. ......|.+.|.++.++|++..++ .+++.++.|++|+.......
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----- 234 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----- 234 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----
Confidence 9999999988 8999999988753 344567888999999999876544 23446889999999887633
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
....+...+ ....+. |++..+++++ .||.|+|||+.+++.+.
T Consensus 235 ~~~~~~~~v-~~~~~~-----~~~~~~~~~sg~~d~~i~iwd~~~~~~~~------------------------------ 278 (318)
T 4ggc_A 235 SAVDAHSQV-CSILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA------------------------------ 278 (318)
T ss_dssp EEEECSSCE-EEEEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE------------------------------
T ss_pred ccccceeee-eeeeec-----ccccceEEEEEcCCCEEEEEECCCCcEEE------------------------------
Confidence 223333333 344454 7777777654 69999999987654321
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.+|.+.|.+++|+|||.+| +|||.|+++++|++.
T Consensus 279 -------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 279 -------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF 314 (318)
T ss_dssp -------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred -------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence 334788899999999999999 999999999999974
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.5e-31 Score=298.88 Aligned_cols=334 Identities=12% Similarity=0.068 Sum_probs=247.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...+ +++.|.+.
T Consensus 55 ~~~v--~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v------------------~~~~~s~~------ 108 (814)
T 3mkq_A 55 ETPV--RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI------------------RSIAVHPT------ 108 (814)
T ss_dssp SSCE--EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE------------------EEEEECSS------
T ss_pred CCcE--EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCE------------------EEEEEeCC------
Confidence 4678 555999999999999999999999999999998887665544 45555543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-C
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-K 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~ 160 (630)
+.+|++++.+|.|++||+.++........+|...|.+++|+| ++..|++++.||.|++||+.+++....+..+. .
T Consensus 109 ---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 185 (814)
T 3mkq_A 109 ---KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185 (814)
T ss_dssp ---SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred ---CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCC
Confidence 678999999999999999988544455568999999999999 88899999999999999999988888877665 7
Q ss_pred CeEEEEEcc--CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 GISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p--~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.+.+++|+| ++.++++++ |.|++||+.+++.+..+.+|...|++++|+|+++++++++ .||.|++||+.+++..
T Consensus 186 ~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~- 263 (814)
T 3mkq_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVE- 263 (814)
T ss_dssp CCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSEE-
T ss_pred CEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEE-
Confidence 899999999 999999998 8999999999999999999999999999999999999988 6999999999887633
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCE-EEEEecCCcEEEEEcCCcccccccCceeEEe------------------
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISETGVCYIWYGQNIEELRNTKATKILS------------------ 297 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------------------ 297 (630)
..+..+...+..+.++ |++.. +++++.++.+.+|++..........+....+
T Consensus 264 ----~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 264 ----KTLNVGLERSWCIATH-----PTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp ----EEECCSSSSEEEEEEC-----TTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECC
T ss_pred ----EEeecCCCcEEEEEEc-----cCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecc
Confidence 3333344455566665 78763 3455556778888876543222111110000
Q ss_pred ------------------------eccCCCcccccchhhhhhhccccccccCCc--------------------eeEEEE
Q 006808 298 ------------------------SSEDVNSKSQKSATAAIFAAKLQDIVKPAS--------------------VHTFVA 333 (630)
Q Consensus 298 ------------------------~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--------------------~~~~~~ 333 (630)
.....++|+++ .+++++ ++.+.+++ +..+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR----FVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp SCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS----EEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEE
T ss_pred cccccccCccceeeeecCCCCccCCceeEECCCCC----EEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEE
Confidence 01122455555 555555 55444322 111111
Q ss_pred E-cCccCceeeEEeccCCCcEEEeecCCc---ceeeccccceeccccceeccc
Q 006808 334 Y-GLLLKPSFQKILVNSGEDINLNCSQDG---VLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 334 ~-g~~~~~~~~~~~~h~~~v~~~~~s~dg---~~l~~s~s~d~~~~~w~~~~~ 382 (630)
. .......+..+.+|...+.++.|+||| .+| ++++.|+.+++|++.++
T Consensus 410 ~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l-~~~~~d~~v~~~d~~~~ 461 (814)
T 3mkq_A 410 IDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGAL-LGVKSDGFVYFFDWDNG 461 (814)
T ss_dssp ECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSS-EEEEETTEEEEECTTTC
T ss_pred EeCCCcEEEEECCCCccceEEcCCcCccceecceE-EEEecCCEEEEEECCcC
Confidence 1 111122334556788888889999998 466 77788899999987643
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-31 Score=267.49 Aligned_cols=245 Identities=16% Similarity=0.177 Sum_probs=191.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.. .+.+++|.++..
T Consensus 13 ~~~V--~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~------------------~V~~v~~~~~~~-- 70 (316)
T 3bg1_A 13 EDMI--HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG------------------PVWQVAWAHPMY-- 70 (316)
T ss_dssp -CCE--EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS------------------CEEEEEECCGGG--
T ss_pred cCeE--EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc------------------cEEEEEeCCCCC--
Confidence 4678 555999999999999999999999998775 3556665544 355666654311
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCce---eE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL---LG 153 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~~---~~ 153 (630)
+.+|++|+.|++|++||+.++. .... ..+|...|.+++|+|+ |.+|++|+.|++|++||+..+.. ..
T Consensus 71 -----~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~ 144 (316)
T 3bg1_A 71 -----GNILASCSYDRKVIIWREENGTWEKSHE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144 (316)
T ss_dssp -----SSCEEEEETTSCEEEECCSSSCCCEEEE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC
T ss_pred -----CCEEEEEECCCEEEEEECCCCcceEEEE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee
Confidence 6789999999999999999874 3333 3579999999999997 78999999999999999987632 34
Q ss_pred EeecCCCCeEEEEEccC-----------------CCEEEEeC--CeEEEEECCCC---ceeeEeecCCCCeEEEEEeeCC
Q 006808 154 KFRASTKGISCMAVSSD-----------------GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~-----------------~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~~ 211 (630)
.+.+|...|.+++|+|+ +.+|++++ +.|++||+..+ +.+..+.+|..+|.+++|+|++
T Consensus 145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence 56678889999999997 46888887 89999999755 4667788999999999999986
Q ss_pred ----cEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 212 ----KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 212 ----~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.+|++++ .|++|++|++...............|. ..+..+.|+ |++.+|++++.||.|+||+..
T Consensus 225 ~~~~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~~~~~-~~v~~v~~s-----p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 225 GLPTSTIASCS-QDGRVFIWTCDDASSNTWSPKLLHKFN-DVVWHVSWS-----ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SCSCCEEEEEE-TTCEEEEEECSSTTCCCCBCCEEEECS-SCEEEEEEC-----TTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCceEEEEc-CCCeEEEEEccCccccchhhhhhhcCC-CcEEEEEEc-----CCCCEEEEEcCCCeEEEEEEC
Confidence 7788877 799999999876321100011112233 345566676 999999999999999999974
No 68
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.7e-31 Score=275.51 Aligned_cols=246 Identities=13% Similarity=0.156 Sum_probs=201.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCC----CcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.++| .+++|+|+|++||+|+.||.|++|++.+ ......+.+|.. .+.++.|.+.+
T Consensus 67 ~~~v--~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~- 125 (416)
T 2pm9_A 67 DSKF--NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS------------------SVKTVKFNAKQ- 125 (416)
T ss_dssp SSCE--EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS------------------CCCEEEECSSS-
T ss_pred CCce--EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc------------------ceEEEEEcCCC-
Confidence 3567 5669999999999999999999999987 346666665544 45566666543
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCe------eeEEc--cCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCC
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRL--SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~------~~~~~--~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~ 149 (630)
+.+|++++.+|.|++||+.++. ....+ ..+|...|.+++|+|+ +.+|++++.||.|++||+.++
T Consensus 126 -------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 126 -------DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp -------TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred -------CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence 5689999999999999999886 32222 3478899999999998 789999999999999999999
Q ss_pred ceeEEeecC------CCCeEEEEEccCC-CEEEEeC--C---eEEEEECCCC-ceeeEee-cCCCCeEEEEEee-CCcEE
Q 006808 150 SLLGKFRAS------TKGISCMAVSSDG-KMLATAA--G---QLKTFNCSDH-KKMQKFS-GHPGAVRFMTFSD-NGKYV 214 (630)
Q Consensus 150 ~~~~~~~~~------~~~v~~l~~~p~~-~~l~~~~--g---~i~lwd~~~~-~~~~~~~-~h~~~v~~l~~sp-~~~~l 214 (630)
+.+..+..+ ...|.+++|+|++ .++++++ + .|++||++++ ..+..+. +|...|++++|+| ++.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence 999988876 6799999999997 5777777 5 9999999986 5677787 8999999999999 89999
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccc
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
++++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++ .+|++++.||.|++|++.++...
T Consensus 279 ~s~~-~dg~v~~wd~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 279 LSSG-RDNTVLLWNPESAEQL-----SQFPARGNWCFKTKFA-----PEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEE-SSSEEEEECSSSCCEE-----EEEECSSSCCCCEEEC-----TTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred EEEe-CCCCEEEeeCCCCccc-----eeecCCCCceEEEEEC-----CCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9888 6999999999887633 3333344455566676 888 89999999999999999877643
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=9.3e-31 Score=273.00 Aligned_cols=236 Identities=14% Similarity=0.175 Sum_probs=194.9
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
..|+|+|++||+|+.||.|+|||+.++.....+.+|... +++++|.+. +.+|+
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~------------------v~~~~~~~~---------~~~l~ 155 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE------------------ITKLKFFPS---------GEALI 155 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSC------------------EEEEEECTT---------SSEEE
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCc------------------cEEEEECCC---------CCEEE
Confidence 378999999999999999999999999888777655544 445555553 77899
Q ss_pred EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC---CCCeEE---
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGISC--- 164 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~--- 164 (630)
+|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++++..+..+ ...+.+
T Consensus 156 s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp EEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred EEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence 9999999999999999887666 479999999999999999999999999999999999999888753 334444
Q ss_pred ------------------EEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCc-EEEEEeeCCC
Q 006808 165 ------------------MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGK-YVLSSAVGER 222 (630)
Q Consensus 165 ------------------l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~-~l~~~~~~d~ 222 (630)
++|+|++++|++++ |.|++||+++++.+..+. +|...|++++|+|++. +|++++ .|+
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg 313 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENG 313 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTS
T ss_pred ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCC
Confidence 45578999999988 899999999998777664 5788999999999999 888877 699
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.|++||+.+++.. ...+ ..++...+.++++ +++.+|++++.||.|++|++...
T Consensus 314 ~i~vwd~~~~~~~--~~~~-~~~~~~~v~~~~~------~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 314 MLAQWDLRSPECP--VGEF-LINEGTPINNVYF------AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEEETTCTTSC--SEEE-EESTTSCEEEEEE------ETTEEEEEETTTEEEEEEEECCT
T ss_pred eEEEEEcCCCcCc--hhhh-hccCCCCceEEEe------CCCCEEEEecCCccEEEEeccCC
Confidence 9999999987542 1122 2334555666666 56789999999999999998764
No 70
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=7.3e-30 Score=267.66 Aligned_cols=272 Identities=16% Similarity=0.251 Sum_probs=219.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+++++|++|++|+.||.|++||+.+++....+.+|.. .+.++.| + +.+|++
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~l~~---~--------~~~l~s 188 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG------------------SVLCLQY---D--------ERVIIT 188 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSS------------------CEEEEEC---C--------SSEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC------------------cEEEEEE---C--------CCEEEE
Confidence 4455899999999999999999999999988876544 3456666 1 678999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee---EEeecCCCCeEEEEEc
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---GKFRASTKGISCMAVS 168 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~v~~l~~~ 168 (630)
|+.||.|++||+.+++.+..+. +|...|.+++|+ +..+++|+.||.|++||+.+++.. ..+.+|...|.+++|
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EcCCCeEEEEECCCCcEEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999999999999999886664 799999999996 459999999999999999988765 667889999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
++.++++++ |.|++||+.+++.+..+.+|...|.++.|+ +.++++++ .|+.|++||+.+++. ...+..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~~~~-----~~~~~~h 335 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC-----LRVLEGH 335 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCE-----EEEECCC
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCCCCE-----EEEEeCC
Confidence 677888887 899999999999999999999999999985 67888887 699999999998763 3334434
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCC
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 326 (630)
...+.++.+ ++.+|++|+.||.|++||+.++...... ..
T Consensus 336 ~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~---------------~~------------------- 374 (435)
T 1p22_A 336 EELVRCIRF-------DNKRIVSGAYDGKIKVWDLVAALDPRAP---------------AG------------------- 374 (435)
T ss_dssp SSCEEEEEC-------CSSEEEEEETTSCEEEEEHHHHTSTTSC---------------TT-------------------
T ss_pred cCcEEEEEe-------cCCEEEEEeCCCcEEEEECCCCCCcccc---------------cc-------------------
Confidence 444444544 5789999999999999998655421100 00
Q ss_pred ceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
...+..+.+|.+.|.+++| ++.+| ++++.|+++++|++.+
T Consensus 375 ------------~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 375 ------------TLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWDFLN 414 (435)
T ss_dssp ------------TTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC---
T ss_pred ------------chheeeccCCCCCeEEEEe--CCCEE-EEEeCCCEEEEEECCC
Confidence 0123345588899999999 78888 9999999999999864
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=1.3e-29 Score=253.24 Aligned_cols=239 Identities=21% Similarity=0.339 Sum_probs=196.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|+|++|++|+.||.|++||+.+++++..+.+|...+ .++.|.+.
T Consensus 65 ~~~v--~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~------ 118 (312)
T 4ery_A 65 KLGI--SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV------------------FCCNFNPQ------ 118 (312)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE------------------EEEEECSS------
T ss_pred CCce--EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCE------------------EEEEEcCC------
Confidence 3567 556999999999999999999999999999998887665444 45555443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-cCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~ 161 (630)
+.+|++|+.+|.|++||+.+++.+..+ ..|..+|.+++|+|++++|++++.||.|++||+.+++.+..+. .+...
T Consensus 119 ---~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 119 ---SNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp ---SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred ---CCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 778999999999999999999887666 4799999999999999999999999999999999999887764 34568
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEE--EEEe-eCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF--MTFS-DNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~--l~~s-p~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
+.+++|+|++++|++++ +.|++||+.+++.+..+.+|...+.. ..|+ +++.+|++++ .|+.|++||+.+++.
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~-- 271 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEI-- 271 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCE--
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchh--
Confidence 99999999999999988 89999999999999999888765332 3444 5677888777 799999999988763
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcC
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ 282 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~ 282 (630)
...+..+...+..+.++ |++.++++++ .||.|++|+..
T Consensus 272 ---~~~~~~h~~~v~~~~~~-----p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 ---VQKLQGHTDVVISTACH-----PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---EEEECCCSSCEEEEEEC-----SSSSEEEEEECTTTCCEEEEECC
T ss_pred ---hhhhhccCCcEEEEeec-----CcCCceEEEEccCCccEEEecCC
Confidence 33344344445556666 8999999987 59999999864
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7.7e-30 Score=264.43 Aligned_cols=247 Identities=13% Similarity=0.206 Sum_probs=201.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|++||+.+++.+..+.+|.. .+.++.|.
T Consensus 134 ~~~v--~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~-------- 185 (401)
T 4aez_A 134 STYV--ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA------------------RVGCLSWN-------- 185 (401)
T ss_dssp TCCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS------------------CEEEEEEE--------
T ss_pred CCCE--EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC------------------ceEEEEEC--------
Confidence 4577 5669999999999999999999999999999888875443 45567772
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++|+.+|.|++||+...........+|...|.+++|+|++++|++++.|+.|++||+.+++++..+..|...|
T Consensus 186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence 56899999999999999995444334445799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCC-EEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe-eCCCeEEEEEcCCCcccc
Q 006808 163 SCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVKKQS 236 (630)
Q Consensus 163 ~~l~~~p~~~-~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~-~~d~~i~vwd~~~~~~~~ 236 (630)
.+++|+|++. ++++++ +.|++||+.+++.+..+. +...|.+++|+|+++++++++ ..|+.|++|++.++...
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~- 340 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT- 340 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-
Confidence 9999999764 555542 799999999999888886 667899999999999998853 35999999999886543
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
....+..+...+..+.|+ |++.+|++++.||.|++|++.+++.+..
T Consensus 341 --~~~~~~~h~~~v~~~~~s-----~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 341 --KQVDIPAHDTRVLYSALS-----PDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp --EEEEEECCSSCCCEEEEC-----TTSSEEEEECTTSEEEEEECCC------
T ss_pred --eEEEecCCCCCEEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 233333344455566676 9999999999999999999998877654
No 73
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=269.89 Aligned_cols=295 Identities=11% Similarity=0.008 Sum_probs=221.4
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccc-------c--------c-cccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-------E--------R-EHLSVD 67 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~-------~--------~-~~~~~~ 67 (630)
..| .+++|||||+++|+++.|++|+ |...++ .+.+|...+..+.|+|+- . . +| ...
T Consensus 16 ~~v--~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~ 87 (588)
T 2j04_A 16 DWK--NNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCY 87 (588)
T ss_dssp SSS--CCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCC
T ss_pred ccE--EEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCc
Confidence 456 4559999999999999999999 755554 447888888888777641 0 0 22 456
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCC-----CEEEEEEecCCCEEEEEeCCCcEE
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGADGMVC 142 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~-----~v~~~~~s~~g~~l~s~~~dg~v~ 142 (630)
+.+++|.|. +..|++++.+|.|++||..+ ++..+ . |.. .|.+++|||+|++|++|+.||+|+
T Consensus 88 V~~vawSPd---------G~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 88 PRVCKPSPI---------DDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp EEEEEECSS---------SSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred EEEEEECCC---------CCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 889999986 78899999999999999544 44343 3 554 599999999999999999999999
Q ss_pred EEeCCCCce-------eEEe----ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCce---eeEe-ecCCCCeEEEE
Q 006808 143 EIDPLTGSL-------LGKF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF-SGHPGAVRFMT 206 (630)
Q Consensus 143 iwd~~~~~~-------~~~~----~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~---~~~~-~~h~~~v~~l~ 206 (630)
+||+.++.. +.++ .+|...|.+++|+|+| ++++++ ++|++||+.++.. ..++ .+|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 999998853 5676 5667899999999999 555554 8999999988773 3466 47889999999
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEe--cCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI--DNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
|+ |+++++++ ++.|++||+.+++.. ....+|...+.. +.+ + |++..|++++.||. ++|....
T Consensus 234 Fs--g~~LASa~--~~tIkLWd~~~~~~~----~~~~gh~~~V~~-va~~~s-----~d~~~La~a~edG~-klw~~d~- 297 (588)
T 2j04_A 234 IV--DYKVVLTC--PGYVHKIDLKNYSIS----SLKTGSLENFHI-IPLNHE-----KESTILLMSNKTSY-KVLLEDE- 297 (588)
T ss_dssp EE--TTEEEEEC--SSEEEEEETTTTEEE----EEECSCCSCCCE-EEETTC-----SSCEEEEECSSCEE-EEEESSS-
T ss_pred EE--CCEEEEEe--CCeEEEEECCCCeEE----EEEcCCCceEEE-EEeeeC-----CCCCEEEEEcCCCC-EEEeecc-
Confidence 99 68888875 689999999987642 444455555444 556 5 89999999999999 9999861
Q ss_pred ccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCccee
Q 006808 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (630)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (630)
+. ++|++. .+++ .++.++.|+. .|.. +..+ .+...|.+++|||||..+
T Consensus 298 ------------~~----~spd~~----l~a~--~d~~v~lW~~-----~g~~----l~~~-~~~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 298 ------------LH----VTADNI----IAPY--LEKKFKKWST-----IWNE----FNNY-ETTLVIHGISLSPDGYSI 345 (588)
T ss_dssp ------------EE----EECCCS----SHHH--HHHHHHHTTT-----TTTS----SSSS-CCEEEEEEEEECTTSSEE
T ss_pred ------------EE----ECCCce----EEEE--cCCEEEEEEC-----CCCc----eeee-ccceEEEEEEECCCCCEE
Confidence 11 455544 3333 3777777552 1111 1122 225568999999999998
Q ss_pred ecccc
Q 006808 365 PMSQS 369 (630)
Q Consensus 365 ~~s~s 369 (630)
++++
T Consensus 346 -A~~~ 349 (588)
T 2j04_A 346 -AIVY 349 (588)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 6665
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.9e-30 Score=262.65 Aligned_cols=274 Identities=14% Similarity=0.135 Sum_probs=215.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| .+++|+|+|++|++|+.||.|+||++.++. ....+..|. ..+++++|.+.
T Consensus 11 ~~~v--~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~--- 67 (342)
T 1yfq_A 11 KDYI--SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK------------------HPLLCCNFIDN--- 67 (342)
T ss_dssp SSCE--EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS------------------SCEEEEEEEES---
T ss_pred CCcE--EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC------------------CceEEEEECCC---
Confidence 4578 566999999999999999999999998877 223333332 34667777664
Q ss_pred cccccCCc-EEEEEeCCCeEEEEEc-cCCeeeEEccCC--CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-------
Q 006808 80 KKRKLGSS-LLVLGTGGGDVLALAV-SAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------- 148 (630)
Q Consensus 80 ~~~~~~~~-~l~~~~~~g~v~iwd~-~~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~------- 148 (630)
+. +|++|+.+|.|++||+ .++.. ....+ |...|.+++|+| ++.|++++.|+.|++||+.+
T Consensus 68 ------~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 68 ------TDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp ------SSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred ------CCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence 67 8999999999999999 88766 33357 999999999999 99999999999999999988
Q ss_pred --CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC-Cce--eeEeecCCCCeEEEEEee-CCcEEEEEeeC
Q 006808 149 --GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLSSAVG 220 (630)
Q Consensus 149 --~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~ 220 (630)
++++..+. |...|.+++|+|++ +++++ +.|++||+++ +.. ......|...+.+++|+| +++++++++ .
T Consensus 139 ~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~ 214 (342)
T 1yfq_A 139 VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-I 214 (342)
T ss_dssp EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-T
T ss_pred ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-c
Confidence 77777777 78899999999987 55555 8999999988 543 334456888999999999 999999988 6
Q ss_pred CCeEEEEEcCCC------ccccceeeeeecCC--------ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 221 ERYIALWRTDGV------KKQSASCVLAMEHP--------AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 221 d~~i~vwd~~~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
|+.|++|++... +.. ..+. .|. ...+..+.|+ |++.+|++++.||.|++||+.+++.
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKR---FAFR-CHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTC---EEEE-CCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEE
T ss_pred CCcEEEEEEcCCCcccccccc---eeee-cccccccccccceeEEEEEEc-----CCCCEEEEecCCceEEEEcCccHhH
Confidence 999999999876 221 2222 121 2256667776 9999999999999999999876644
Q ss_pred ccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEecc-CCCcEEEeecCCcceee
Q 006808 287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLP 365 (630)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~ 365 (630)
+.. +..| ...|.+++ |+|.+|
T Consensus 286 ~~~-------------------------------------------------------~~~~h~~~v~~~~--~~~~~l- 307 (342)
T 1yfq_A 286 IKN-------------------------------------------------------FAKFNEDSVVKIA--CSDNIL- 307 (342)
T ss_dssp EEE-------------------------------------------------------CCCCSSSEEEEEE--ECSSEE-
T ss_pred hhh-------------------------------------------------------hhcccCCCceEec--CCCCeE-
Confidence 221 1144 66788888 999999
Q ss_pred ccccceec-ccccee
Q 006808 366 MSQSLLKS-KRGRYV 379 (630)
Q Consensus 366 ~s~s~d~~-~~~w~~ 379 (630)
++++.|+. .+.+..
T Consensus 308 ~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 308 CLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEECTHHHHCSSS
T ss_pred EEEecCCcccccccc
Confidence 99999998 666653
No 75
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-30 Score=269.21 Aligned_cols=276 Identities=12% Similarity=0.135 Sum_probs=220.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|++|| .++..+..+..|... +.++.|.+.
T Consensus 108 ~~~v--~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~------------------v~~~~~~~~------ 160 (425)
T 1r5m_A 108 TNQV--TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAP------------------IVSVKWNKD------ 160 (425)
T ss_dssp CBCE--EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSC------------------EEEEEECTT------
T ss_pred CCce--EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCcc------------------EEEEEECCC------
Confidence 3478 5669999999999999999999999 678888877755544 445555543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC---------------EEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---------------VSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~---------------v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+.+|++++.+|.|++||+.+++.+..+. .|... +.+++|+|++ .+++++.+|.|++||+.
T Consensus 161 ---~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 161 ---GTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp ---SSEEEEEETTCCEEEEETTTTEEEEEEC-CC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred ---CCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence 7789999999999999999998876664 45555 9999999975 68899999999999999
Q ss_pred CCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
+++.+..+..|...|.+++|+|++++|++++ +.|++||+.+++.+..+.+|...|.+++|+|++ ++++++ .|+.|+
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~ 313 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVR 313 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEE
Confidence 9999999999999999999999999999988 899999999999999999999999999999999 778777 699999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc--------------------
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-------------------- 285 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------------------- 285 (630)
+||+.+++.. ..+..+...+..+.|+ |++.+|++++.||.|++||+.++.
T Consensus 314 i~d~~~~~~~-----~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 314 LWSLKQNTLL-----ALSIVDGVPIFAGRIS-----QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp EEETTTTEEE-----EEEECTTCCEEEEEEC-----TTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred EEECCCCcEe-----EecccCCccEEEEEEc-----CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence 9999887633 2333334455666776 999999999999999999998877
Q ss_pred cccccCceeE--EeeccCCCcccccchhhhhhhccccccccCCc
Q 006808 286 ELRNTKATKI--LSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (630)
Q Consensus 286 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 327 (630)
.+........ .+.+ ..++++++ .+++++.++.+++|+
T Consensus 384 ~~~~~~~~~~~~~v~~-~~~s~~~~----~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 384 LYASYQSSQDNDYIFD-LSWNCAGN----KISVAYSLQEGSVVA 422 (425)
T ss_dssp EEEEECCTTCCCCEEE-EEECTTSS----EEEEEESSSCCEEEE
T ss_pred hhhhhcCcccCCceEE-EEccCCCc----eEEEEecCceEEEEe
Confidence 4443332211 1111 12677776 788888887666543
No 76
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=7.2e-30 Score=258.30 Aligned_cols=252 Identities=15% Similarity=0.199 Sum_probs=200.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc----EEEEecccccccccccccccccccccccceeeEEeccc-c
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-D 77 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~-~ 77 (630)
.++| .+++|+|+|++||+|+.||.|+|||+.++. ....+.+|.. .+++++|.+. +
T Consensus 11 ~~~v--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~d 70 (351)
T 3f3f_A 11 DDLV--HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS------------------SIVAIDWASPEY 70 (351)
T ss_dssp SSCE--EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS------------------CEEEEEECCGGG
T ss_pred ccce--eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC------------------cEEEEEEcCCCC
Confidence 4678 566999999999999999999999998763 4555554433 4667777664 2
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCC---------eeeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeC
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~---------~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~ 146 (630)
+.+|++|+.||.|++||+.++ +.+..+ .+|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 71 --------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 71 --------GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp --------CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred --------CCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 678999999999999999887 334343 579999999999999 999999999999999999
Q ss_pred CCCceeEEee-------------cCCCCeEEEEEccC---CCEEEEeC--CeEEEEECCCCce--eeEeecCCCCeEEEE
Q 006808 147 LTGSLLGKFR-------------ASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMT 206 (630)
Q Consensus 147 ~~~~~~~~~~-------------~~~~~v~~l~~~p~---~~~l~~~~--g~i~lwd~~~~~~--~~~~~~h~~~v~~l~ 206 (630)
.+++.+..+. .+...+.+++|+|+ +.++++++ +.+.+|+...++. +..+.+|...|++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 221 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS 221 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE
Confidence 9887655443 46778999999997 88888887 7887788777764 677789999999999
Q ss_pred EeeCC----cEEEEEeeCCCeEEEEEcCCCccc-----------------------------------------cceeee
Q 006808 207 FSDNG----KYVLSSAVGERYIALWRTDGVKKQ-----------------------------------------SASCVL 241 (630)
Q Consensus 207 ~sp~~----~~l~~~~~~d~~i~vwd~~~~~~~-----------------------------------------~~~~~~ 241 (630)
|+|++ .+|++++ .|+.|++||+..+... ......
T Consensus 222 ~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp ECCCSSCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred ECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 99998 7888877 6999999999864210 012333
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
.+..+...+..+.|+ |++.+|++++.||.|+||++.+++.+..
T Consensus 301 ~~~~h~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWN-----LTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EECTTSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEecccccEEEEEEc-----CCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 344444556667776 9999999999999999999988766543
No 77
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.1e-30 Score=261.21 Aligned_cols=249 Identities=16% Similarity=0.208 Sum_probs=200.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECC--CCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.||.|+|||+. ++.....+.+|.. .++++.|.+...
T Consensus 11 ~~~v--~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~-- 68 (379)
T 3jrp_A 11 NELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG------------------PVWRVDWAHPKF-- 68 (379)
T ss_dssp CCCE--EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS------------------CEEEEEECCGGG--
T ss_pred cccE--EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCC------------------cEEEEEeCCCCC--
Confidence 4678 556999999999999999999999997 5556666665443 455667754421
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCc--eeEE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGK 154 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~--~~~~ 154 (630)
+.+|++|+.||.|++||+.+++ .... ..+|...|.+++|+|+ +.+|++++.|+.|++||+.++. ....
T Consensus 69 -----~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 69 -----GTILASCSYDGKVLIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp -----CSEEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred -----CCEEEEeccCCEEEEEEcCCCceeEeee-ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence 6789999999999999999987 4433 3579999999999999 9999999999999999998873 3445
Q ss_pred eecCCCCeEEEEEcc-------------CCCEEEEeC--CeEEEEECCCCc----eeeEeecCCCCeEEEEEeeC---Cc
Q 006808 155 FRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDN---GK 212 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p-------------~~~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~---~~ 212 (630)
+..|...|.+++|+| ++.++++++ |.|++||++++. ....+.+|...|.+++|+|+ +.
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 778899999999999 689999987 899999998764 44667889999999999999 88
Q ss_pred EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
+|++++ .|+.|++||+..+.................+..+.|+ |++.+|++++.||.|++|++....
T Consensus 223 ~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 223 YLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEESSSSEEEEEEEETT
T ss_pred eEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCCC
Confidence 888887 6999999999987532111222222244456667776 999999999999999999987543
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.1e-30 Score=264.85 Aligned_cols=280 Identities=14% Similarity=0.189 Sum_probs=217.5
Q ss_pred eEECCCCCEE-EEeeCCCcEEEEECCCCcEE----EEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 11 ~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
++++|+...+ ++|+.||.|+||++...... ..+. +| ...+++++|.+.+
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-----------------~h-~~~V~~~~~~p~~-------- 93 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-----------------GH-TAPVLDIAWCPHN-------- 93 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-----------------CC-SSCEEEEEECTTC--------
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-----------------cC-CCCEEEEEeCCCC--------
Confidence 5788877544 45788999999998654321 1222 33 2357788887743
Q ss_pred CcEEEEEeCCCeEEEEEccCC-------eeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEe--
Q 006808 86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF-- 155 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~-------~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~-- 155 (630)
+.+|++|+.||.|++||+.++ ..+..+ .+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+
T Consensus 94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172 (402)
T ss_dssp TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence 778999999999999999987 334343 4799999999999998 69999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ecCCCC-eEEEEEeeCCcEEEEEe--eCCCeEEEEEc
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGA-VRFMTFSDNGKYVLSSA--VGERYIALWRT 229 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~-v~~l~~sp~~~~l~~~~--~~d~~i~vwd~ 229 (630)
..|...|.+++|+|++.+|++++ |.|++||+++++.+..+ .+|.+. +.++.|+|++.+|+++. +.|+.|++||+
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 78999999999999999999988 89999999999999888 788776 89999999999888872 26999999999
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEE-EecCCcEEEEEcCCccc-ccccCceeEEeeccCCCcccc
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNIEE-LRNTKATKILSSSEDVNSKSQ 307 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 307 (630)
.+.... .......+... +..+.|+ |++.+|++ |+.||.|++|++.+++. +..
T Consensus 253 ~~~~~~--~~~~~~~~~~~-v~~~~~s-----~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~------------------ 306 (402)
T 2aq5_A 253 KHLEEP--LSLQELDTSSG-VLLPFFD-----PDTNIVYLCGKGDSSIRYFEITSEAPFLHY------------------ 306 (402)
T ss_dssp TBCSSC--SEEEECCCCSS-CEEEEEE-----TTTTEEEEEETTCSCEEEEEECSSTTCEEE------------------
T ss_pred ccccCC--ceEEeccCCCc-eeEEEEc-----CCCCEEEEEEcCCCeEEEEEecCCCcceEe------------------
Confidence 886642 12333344443 4455666 89998865 55799999999876542 100
Q ss_pred cchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
+... .|...|.+++|+|+|.++ +++ ++.+++|++..
T Consensus 307 ----------------------------------l~~~-~~~~~v~~~~~sp~~~~~-~s~--~~~~~~~~l~~ 342 (402)
T 2aq5_A 307 ----------------------------------LSMF-SSKESQRGMGYMPKRGLE-VNK--CEIARFYKLHE 342 (402)
T ss_dssp ----------------------------------EEEE-CCSSCCSEEEECCGGGSC-GGG--TEEEEEEEEET
T ss_pred ----------------------------------eccc-ccCCcccceEEecccccc-eec--ceeEEEEEcCC
Confidence 0011 245689999999999988 654 56899999864
No 79
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=5.1e-30 Score=261.76 Aligned_cols=242 Identities=12% Similarity=0.203 Sum_probs=200.0
Q ss_pred cccceeEeEECCC----CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 4 ~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.+| .+++|+|+ |++|++|+.||.|+|||+.+++.+..+.+|... +.++.|.+.+
T Consensus 70 ~~v--~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------------------i~~~~~~~~~-- 127 (366)
T 3k26_A 70 ENF--YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------------------INELKFHPRD-- 127 (366)
T ss_dssp CCE--EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------------------EEEEEECSSC--
T ss_pred CcE--EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------------------EEEEEECCCC--
Confidence 457 56699999 679999999999999999999999888765544 4556665532
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+.+|++|+.+|.|++||+.+++.+..+. .+|...|.+++|+|++++|++++.||.|++||+.+++....+..
T Consensus 128 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 128 ------PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp ------TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred ------CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence 7789999999999999999998876652 57999999999999999999999999999999998765544433
Q ss_pred ----------------------------CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce--------------ee
Q 006808 158 ----------------------------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--------------MQ 193 (630)
Q Consensus 158 ----------------------------~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~--------------~~ 193 (630)
|...|.+++|+ +.++++++ +.|++||+.++.. +.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 88899999999 67888887 8999999987644 77
Q ss_pred EeecCCCCeEEEEEeeC--CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC--ceeeeeEEecCCccCCCCCEEEE
Q 006808 194 KFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLA 269 (630)
Q Consensus 194 ~~~~h~~~v~~l~~sp~--~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s 269 (630)
.+.+|...|++++|+|+ +++|++++ .|+.|++||+.+++.... ....+..+ ...+..+.|+ |++.+|++
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s 352 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHKA-KCTTLTHHKCGAAIRQTSFS-----RDSSILIA 352 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGGC-EEEEECCTTCCSCEEEEEEC-----TTSSEEEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCccc-cceEEcccccCCceEEEEeC-----CCCCeEEE
Confidence 78899999999999999 99999887 699999999998764421 12223332 4566677777 99999999
Q ss_pred EecCCcEEEEEcC
Q 006808 270 ISETGVCYIWYGQ 282 (630)
Q Consensus 270 ~s~dg~i~iwd~~ 282 (630)
++.||.|++||+.
T Consensus 353 ~~~dg~i~iwd~~ 365 (366)
T 3k26_A 353 VCDDASIWRWDRL 365 (366)
T ss_dssp EETTSEEEEEEC-
T ss_pred EeCCCEEEEEEec
Confidence 9999999999985
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1.4e-29 Score=251.05 Aligned_cols=246 Identities=13% Similarity=0.124 Sum_probs=190.7
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC--eeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVC 142 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~ 142 (630)
.+.+++|.+. +.+|++|+.||.|+|||+..+ +.+.. +.+|.++|.+++|++ ++++|++|+.|++|+
T Consensus 11 ~V~~~~~s~~---------g~~las~s~D~~v~iw~~~~~~~~~~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 11 MIHDAVMDYY---------GKRMATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEEEEEECTT---------SSEEEEEETTSCEEEEEBCSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceEEEEECCC---------CCEEEEEeCCCEEEEEecCCCCcEEEEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4556666544 788999999999999999754 34434 458999999999986 488999999999999
Q ss_pred EEeCCCCc--eeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEeeC----
Q 006808 143 EIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDN---- 210 (630)
Q Consensus 143 iwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~---- 210 (630)
+||+.+++ .+..+..|...|.+++|+|+ +.+|++++ +.|++||++++. ....+.+|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99998874 56678889999999999997 88999988 899999998763 24567899999999999997
Q ss_pred ---------CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC---CCEEEEEecCCcEEE
Q 006808 211 ---------GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYI 278 (630)
Q Consensus 211 ---------~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~dg~i~i 278 (630)
+++|++++ .|+.|++||+.++... ......+..+...+..+.|+ |+ +.+|++++.||.|+|
T Consensus 161 ~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~-~~~~~~l~~H~~~V~~v~~s-----p~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp ---------CCEEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEE
T ss_pred cccCCCCCCcceEEEEc-CCCcEEEEEEcCCCce-EEEEEEecCCCCceEEEEEC-----CCCCCceEEEEEECCCcEEE
Confidence 46888887 6999999999876422 11233344444556667776 77 489999999999999
Q ss_pred EEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
||+.+..... ..... ....|...|.+++|+
T Consensus 234 Wd~~~~~~~~-----~~~~~---------------------------------------------~~~~~~~~v~~~~~s 263 (297)
T 2pm7_B 234 WTQDNEQGPW-----KKTLL---------------------------------------------KEEKFPDVLWRASWS 263 (297)
T ss_dssp EEESSTTSCC-----EEEES---------------------------------------------SSSCCSSCEEEEEEC
T ss_pred EEeCCCCCcc-----ceeee---------------------------------------------ecccCCCcEEEEEEC
Confidence 9986532100 00000 001455679999999
Q ss_pred CCcceeeccccceeccccceec
Q 006808 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|+|.+| ++++.|+++++|+..
T Consensus 264 ~~g~~l-as~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 264 LSGNVL-ALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSSCCE-EEEETTSCEEEEEEC
T ss_pred CCCCEE-EEEcCCCcEEEEEEC
Confidence 999999 999999999999863
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=2.2e-29 Score=257.77 Aligned_cols=251 Identities=12% Similarity=0.150 Sum_probs=203.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++|++|+.||.|++||+.+++....+.. .+| ...+.++.|.+.
T Consensus 52 ~~~v--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------~~~-~~~v~~~~~~~~------ 107 (372)
T 1k8k_C 52 NGQV--TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI---------------LRI-NRAARCVRWAPN------ 107 (372)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC---------------CCC-SSCEEEEEECTT------
T ss_pred CCcc--cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe---------------ecC-CCceeEEEECCC------
Confidence 4577 5569999999999999999999999988876544321 012 235667777664
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee---eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC-------------
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------------- 146 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~------------- 146 (630)
+.+|++++.+|.|++||+..+.. ...+..+|...|.+++|+|++++|++++.||.|++||+
T Consensus 108 ---~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 184 (372)
T 1k8k_C 108 ---EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 184 (372)
T ss_dssp ---SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT
T ss_pred ---CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccc
Confidence 77899999999999999998762 34555679999999999999999999999999999995
Q ss_pred -----CCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 147 -----LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 147 -----~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
..++++..+..|...|.+++|+|++.+|++++ +.|++||+.+++.+..+..|..+|.+++|+|++.+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-- 262 (372)
T 1k8k_C 185 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-- 262 (372)
T ss_dssp TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--
T ss_pred cccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--
Confidence 46788888989999999999999999999988 899999999999999999999999999999999877665
Q ss_pred CCCeEEEEEcCC--Cccc----------------------------cce-------eeeeecCCceeeeeEEecCCccCC
Q 006808 220 GERYIALWRTDG--VKKQ----------------------------SAS-------CVLAMEHPAVFMDCRCIDNGGVDD 262 (630)
Q Consensus 220 ~d~~i~vwd~~~--~~~~----------------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 262 (630)
.|+.|++|++.. +... ... ......|...+..+.+++ +
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~ 337 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS-----G 337 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE-----S
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec-----C
Confidence 599999999987 3200 000 111124556565555676 7
Q ss_pred CC---CEEEEEecCCcEEEEEcCCcccc
Q 006808 263 AG---LYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 263 ~~---~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
+| .+|++|+.||.|++|++.+++.+
T Consensus 338 ~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 338 GKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp TTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred CCcceeeEEEecCCCceEEEEecChhHh
Confidence 77 99999999999999999887654
No 82
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8e-29 Score=252.91 Aligned_cols=279 Identities=13% Similarity=0.101 Sum_probs=212.4
Q ss_pred CcccceeEeEECCC---CCEEEEeeCCCcEEEEECCC-CcEE-EEecccccccccccccccccccccccceeeEEecccc
Q 006808 3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLK-GQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 3 s~~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
.++| .+++|+|+ |++||+|+.||.|+|||+.+ +..+ ..+.+|.. .++++.|.+.
T Consensus 39 ~~~v--~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~- 97 (368)
T 3mmy_A 39 DDSI--GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG------------------PVLDVCWSDD- 97 (368)
T ss_dssp SSCE--EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS------------------CEEEEEECTT-
T ss_pred CCce--EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC------------------CEEEEEECcC-
Confidence 4678 56699999 69999999999999999987 5554 55655544 3556666553
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEE--ecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~--s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
+.+|++++.+|.|++||+.+++.... .+|...|.+++| +|++.+|++++.||.|++||+++++++..+
T Consensus 98 --------~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 98 --------GSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp --------SSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred --------CCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 77899999999999999999987753 369999999999 889999999999999999999999999998
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe--ecCCCCeEEEEEeeCCcE----EEEEeeCCCeEEEE
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKY----VLSSAVGERYIALW 227 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~----l~~~~~~d~~i~vw 227 (630)
..+. .+.++.+.++ .+++++ +.+++|++......... ..+...+.++.+.++... +++++ .|+.|++|
T Consensus 168 ~~~~-~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i~ 243 (368)
T 3mmy_A 168 QLPE-RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAIH 243 (368)
T ss_dssp ECSS-CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEEE
T ss_pred ecCC-CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEEE
Confidence 8654 6677777654 444443 89999999876543322 234456677777766654 77777 69999999
Q ss_pred EcCCCccccceeeeeecCCce------------eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeE
Q 006808 228 RTDGVKKQSASCVLAMEHPAV------------FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 295 (630)
++....... ....+..+.. .+..+.|+ |++.+|++++.||.|++||+.+++.+.
T Consensus 244 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~~~dg~i~iwd~~~~~~~~------- 309 (368)
T 3mmy_A 244 YINPPNPAK--DNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-----PVHGTLATVGSDGRFSFWDKDARTKLK------- 309 (368)
T ss_dssp ESSCSCHHH--HSEEEECSEEC----CCCEEECCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE-------
T ss_pred ecCCCCccc--cceeeeeeecccccccccccccceEEEEEe-----cCCCEEEEEccCCeEEEEECCCCcEEE-------
Confidence 998874311 1222222222 46667776 999999999999999999987654322
Q ss_pred EeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccc
Q 006808 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR 375 (630)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~ 375 (630)
.+..|...|.+++|+|||.+| ++++.|+..+
T Consensus 310 ------------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~s~d~~~~ 340 (368)
T 3mmy_A 310 ------------------------------------------------TSEQLDQPISACCFNHNGNIF-AYASSYDWSK 340 (368)
T ss_dssp ------------------------------------------------ECCCCSSCEEEEEECTTSSCE-EEEECCCSTT
T ss_pred ------------------------------------------------EecCCCCCceEEEECCCCCeE-EEEecccccc
Confidence 122566789999999999999 8888887666
Q ss_pred ccee
Q 006808 376 GRYV 379 (630)
Q Consensus 376 ~w~~ 379 (630)
.|++
T Consensus 341 ~~~~ 344 (368)
T 3mmy_A 341 GHEF 344 (368)
T ss_dssp CGGG
T ss_pred cccc
Confidence 6654
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=4.6e-29 Score=277.50 Aligned_cols=240 Identities=17% Similarity=0.195 Sum_probs=195.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+.+| .+++|+|+|++|++|+.||+|+|||+.++.....+.+|...+.++.|+++
T Consensus 430 ~~~v--~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~------------------------ 483 (694)
T 3dm0_A 430 SHFV--EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD------------------------ 483 (694)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCC------------------------
Confidence 3567 55699999999999999999999999999999888877655554444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEE--ccCCCCCCEEEEEEecCC--CEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWR--LSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~--~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
+..|++|+.|+.|++||......... ...+|...|.+++|+|++ ..+++++.|++|++||+.++++...+.+|
T Consensus 484 ---~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h 560 (694)
T 3dm0_A 484 ---NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH 560 (694)
T ss_dssp ---SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred ---CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 77899999999999999876544322 124688999999999986 57999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
...|++++|+|++++|++++ |.|++||+.+++.+..+. +...|.+++|+|++.++++++ ++.|++||+.++...
T Consensus 561 ~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~- 636 (694)
T 3dm0_A 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV- 636 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE-
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh-
Confidence 99999999999999999998 899999999999887776 456899999999998877654 777999999987643
Q ss_pred ceeeeeecC-----------------CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 237 ASCVLAMEH-----------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 237 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..+.... ....+..+.|+ |+|.+|++|+.||.|+||++.
T Consensus 637 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s-----pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 637 --EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS-----ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --EEECCCCC----------------CCCCEEEEEEC-----TTSSEEEEEETTSEEEEEEC-
T ss_pred --hhhccccccccccccccccccCCceeEEeeeEEEc-----CCCCEEEEEcCCCeEEEEecc
Confidence 1111000 01123456666 999999999999999999974
No 84
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-30 Score=271.29 Aligned_cols=299 Identities=12% Similarity=0.093 Sum_probs=219.5
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEe-cccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
.|+|+++.+++++ .|+ .+++.+..+ .+|.. .+++++|.+.+ +.+|+
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~------------------~V~~~~~s~~~--------~~~l~ 80 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPN------------------SITSSAVSPGE--------TPYLI 80 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTS------------------CEEEEEEECSS--------SCEEE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCC------------------ceEEEEECCCC--------CCEEE
Confidence 6889998888775 388 467888877 55444 45566665522 77899
Q ss_pred EEeCCCeEEEEEccC---CeeeE-EccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC---CCceeEEeec------
Q 006808 91 LGTGGGDVLALAVSA---GQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFRA------ 157 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~---~~~~~-~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~---~~~~~~~~~~------ 157 (630)
+|+.||.|++||+.+ +.... ....+|...|.+++|+|++++|++++.||.|++||+. +++....+..
T Consensus 81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~ 160 (437)
T 3gre_A 81 TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI 160 (437)
T ss_dssp EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence 999999999999977 43211 1112589999999999999999999999999999994 5555444332
Q ss_pred ------CCCCeEEEE--EccCCCEEEEeC--CeEEEEECCCCceeeEeec--CCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 158 ------STKGISCMA--VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 158 ------~~~~v~~l~--~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
+...+.++. ++|++.++++++ +.|++||+++++.+..+.+ |...|++++|+|++++|++++ .|+.|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~ 239 (437)
T 3gre_A 161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGIID 239 (437)
T ss_dssp EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEE
T ss_pred EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEE
Confidence 344666666 567899999988 8999999999999999988 889999999999999999988 699999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
+||+++++.. ..+...+.. .+..+++.+ .++|++.+|++|+.||.|++||+.+++.+.........+.. ..+++
T Consensus 240 iwd~~~~~~~---~~~~~~~~~-~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~ 313 (437)
T 3gre_A 240 IWDIRFNVLI---RSWSFGDHA-PITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSM-EHFLP 313 (437)
T ss_dssp EEETTTTEEE---EEEBCTTCE-EEEEEEECT-TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCG-GGGSC
T ss_pred EEEcCCccEE---EEEecCCCC-ceEEEEecc-ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcc-ceecc
Confidence 9999986633 222334444 444443331 23478889999999999999999988765544322211111 11333
Q ss_pred cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEec--cCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.++ .+... .+.+ |...|.+++|+ ++.+| ++|+.|+.+++|++.+.
T Consensus 314 ~~~----~l~~~--------------------------~~~~~~~~~~v~~l~~~-~~~~l-~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 314 IEK----GLEEL--------------------------NFCGIRSLNALSTISVS-NDKIL-LTDEATSSIVMFSLNEL 360 (437)
T ss_dssp BCS----SGGGC--------------------------CCCCCCSGGGGCCEEEE-TTEEE-EEEGGGTEEEEEETTCG
T ss_pred ccc----ccccc--------------------------eecccccCCceEEEEEC-CceEE-EecCCCCeEEEEECCCc
Confidence 322 11000 1223 88899999999 88888 99999999999998653
No 85
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.8e-29 Score=253.00 Aligned_cols=290 Identities=13% Similarity=0.043 Sum_probs=205.5
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe----eeEEccCCCCCCEEEEEEec--CCCEEEEE
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSA 135 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~----~~~~~~~~h~~~v~~~~~s~--~g~~l~s~ 135 (630)
+|. ..++++.|.+. +.+|++|+.+|.|++||+.++. .. ....+|...|++++|+| ++++|+++
T Consensus 9 gH~-~~v~~~~~~~~---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 9 GHD-DLVHDVVYDFY---------GRHVATCSSDQHIKVFKLDKDTSNWELS-DSWRAHDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp CCS-SCEEEEEECSS---------SSEEEEEETTSEEEEEEECSSSCCEEEE-EEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred ccc-cceeEEEEcCC---------CCEEEEeeCCCeEEEEECCCCCCcceec-ceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence 453 35778888764 7789999999999999998763 33 33357999999999999 69999999
Q ss_pred eCCCcEEEEeCCCC---------ceeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCceeeEee------
Q 006808 136 GADGMVCEIDPLTG---------SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFS------ 196 (630)
Q Consensus 136 ~~dg~v~iwd~~~~---------~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~~~~~~~------ 196 (630)
+.||.|++||+.++ +.+..+..|...|.+++|+|+ +.++++++ |.|++||+++++.+..+.
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 99999999999887 567788889999999999999 99999987 899999999887654433
Q ss_pred -------cCCCCeEEEEEeeC---CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC--
Q 006808 197 -------GHPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-- 264 (630)
Q Consensus 197 -------~h~~~v~~l~~sp~---~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 264 (630)
+|...+.++.|+|+ +.++++++ .++.+.+|+...+... ....+..+...+..+.|+ |++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~-----p~~~~ 228 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLH---VAAKLPGHKSLIRSISWA-----PSIGR 228 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEE---EEEECCCCCSCEEEEEEC-----CCSSC
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCcee---eeeecCCCCcceeEEEEC-----CCCCC
Confidence 57789999999997 88888887 6999988887766533 344444445556677776 887
Q ss_pred --CEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCcee
Q 006808 265 --LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF 342 (630)
Q Consensus 265 --~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~ 342 (630)
.+|++++.||.|++||+.++................ ...+... .+..+..++. .......+.......+
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF-DNSADVD----MDAQGRSDSN----TEEKAELQSNLQVELL 299 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC------------------------------------------------CCSEEEEEE
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc-CCCcccc----cccccccccc----cceeeeecccccccEE
Confidence 899999999999999998764433221111111100 0111111 1222221110 0111112222334556
Q ss_pred eEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 343 QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
..+.+|...|.+++|+|+|.+| ++++.|+.+++|++..
T Consensus 300 ~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 300 SEHDDHNGEVWSVSWNLTGTIL-SSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEECTTSSCEEEEEECSSSCCE-EEEETTSCEEEEEECT
T ss_pred EEEecccccEEEEEEcCCCCEE-EEecCCCcEEEEecCc
Confidence 6777899999999999999999 9999999999999864
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=284.41 Aligned_cols=250 Identities=16% Similarity=0.204 Sum_probs=201.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECC--CCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++|++|+.||+|+|||+. ++.....+.+|.. .++++.|.+...
T Consensus 9 ~~~V--~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~------------------~V~~l~~s~~~~-- 66 (753)
T 3jro_A 9 NELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG------------------PVWRVDWAHPKF-- 66 (753)
T ss_dssp CCCE--EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS------------------CEEEEEECCTTS--
T ss_pred ccee--EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcC------------------ceEEEEecCCCC--
Confidence 4688 556999999999999999999999987 4556666665544 455666655421
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCc--eeEE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGK 154 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~--~~~~ 154 (630)
+.+|++|+.||.|++||+.++. ....+ .+|...|++++|+|+ ++.+++|+.||.|++||+.++. ....
T Consensus 67 -----~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 67 -----GTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp -----CSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred -----CCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence 6789999999999999999986 44333 579999999999999 9999999999999999998873 4456
Q ss_pred eecCCCCeEEEEEcc-------------CCCEEEEeC--CeEEEEECCCC----ceeeEeecCCCCeEEEEEeeC---Cc
Q 006808 155 FRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDN---GK 212 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p-------------~~~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~---~~ 212 (630)
+..|...|.+++|+| ++.++++|+ |.|++||++++ .....+.+|..+|++++|+|+ +.
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 778899999999999 588888887 89999999887 456678899999999999999 88
Q ss_pred EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
+|++++ .||.|++||+.++.................+..+.|+ |+|.+|++|+.||.|++|++.++..
T Consensus 221 ~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 221 YLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-----TTTCCEEEECSSSCEECCBCCSSSC
T ss_pred EEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc-----CCCCEEEEEcCCCEEEEEecCCCCC
Confidence 998888 6999999999887432111222222344456667776 9999999999999999999986543
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=3.5e-29 Score=258.90 Aligned_cols=252 Identities=15% Similarity=0.127 Sum_probs=202.1
Q ss_pred CcccceeEeEECCC----C---CEEEEeeCCCcEEEEECCCCcE-----EEEecccccccccccccccccccccccceee
Q 006808 3 SSNIRDILTSFSPA----L---DYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTC 70 (630)
Q Consensus 3 s~~V~~~~~~fs~d----g---~~las~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 70 (630)
.++| .+++|+|+ | ++|++|+.||.|++|++.++.. ...+..+.... ....+.+
T Consensus 62 ~~~v--~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~ 126 (397)
T 1sq9_A 62 KSGL--HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-------------KKHSFWA 126 (397)
T ss_dssp TTCE--EEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-------------GGSCEEE
T ss_pred CCcE--EEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc-------------CCCcEEE
Confidence 4577 56699999 9 9999999999999999988876 66665432000 0245677
Q ss_pred EEecccc-cccccccCCcE-EEEEeCCCeEEEEEccC------CeeeE-----Ecc------CCCCCCEEEEEEecCCCE
Q 006808 71 MKWLSVD-RKKKRKLGSSL-LVLGTGGGDVLALAVSA------GQLKW-----RLS------DCHPGGVSAISFATHGSC 131 (630)
Q Consensus 71 ~~w~~~~-~~~~~~~~~~~-l~~~~~~g~v~iwd~~~------~~~~~-----~~~------~~h~~~v~~~~~s~~g~~ 131 (630)
+.|.+.. +. +.. |++++.+|.|++||+.+ +..+. .+. ..|...|.+++|+|++ +
T Consensus 127 ~~~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 199 (397)
T 1sq9_A 127 LKWGASNDRL------LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 199 (397)
T ss_dssp EEEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred EEEeeccCCC------CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence 8887211 11 677 99999999999999998 55443 332 3588999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeec---C---CCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeec---
Q 006808 132 IYSAGADGMVCEIDPLTGSLLGKFRA---S---TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSG--- 197 (630)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~~~---~---~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~--- 197 (630)
|++++.||.|++||+++++.+..+.. | ...|.+++|+|++.+|++++ +.|++||+.+++.+..+.+
T Consensus 200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~ 279 (397)
T 1sq9_A 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279 (397)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence 99999999999999999999999998 8 89999999999999999986 4899999999999999988
Q ss_pred ----------CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee-----cC--------------Cce
Q 006808 198 ----------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-----EH--------------PAV 248 (630)
Q Consensus 198 ----------h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~~--------------~~~ 248 (630)
|...|.+++|+|++++|++++ .|+.|++||+.+++.. ..+.. .| +..
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 355 (397)
T 1sq9_A 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERI---TTLNMHCDDIEIEEDILAVDEHGDSLAEP 355 (397)
T ss_dssp ------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEE---EEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred cccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCcee---EEEecccCcccchhhhhccccccccccCC
Confidence 999999999999999999988 6999999999987643 22220 12 044
Q ss_pred eeeeEEecCCccCCCC----------CEEEEEecCCcEEEEEcCCcc
Q 006808 249 FMDCRCIDNGGVDDAG----------LYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~----------~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+..+.|+ |++ .+|++++.||.|++|++.+|+
T Consensus 356 ~v~~~~~~-----~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 356 GVFDVKFL-----KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CEEEEEEE-----CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ceeEEEec-----cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 55666666 887 799999999999999997763
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.4e-29 Score=253.45 Aligned_cols=245 Identities=12% Similarity=0.074 Sum_probs=191.3
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee-eEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCE 143 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~i 143 (630)
.+.+++|.+. +.+|++|+.|+.|++||+.++.. ....+.+|..+|.+++|++ ++++|++|+.|++|++
T Consensus 15 ~V~~v~~s~~---------g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 15 MIHDAQMDYY---------GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp CEEEEEECGG---------GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eEEEeeEcCC---------CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 4566666654 77899999999999999988753 2233458999999999975 4889999999999999
Q ss_pred EeCCCC--ceeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCce---eeEeecCCCCeEEEEEeeC----
Q 006808 144 IDPLTG--SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDN---- 210 (630)
Q Consensus 144 wd~~~~--~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~---- 210 (630)
||+.++ +....+.+|...|.+++|+|+ +.+|++++ ++|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence 999887 456678889999999999997 78999998 8999999987632 3456789999999999997
Q ss_pred -------------CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC----CEEEEEecC
Q 006808 211 -------------GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISET 273 (630)
Q Consensus 211 -------------~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~s~s~d 273 (630)
+++|++++ .|+.|++||+...... .+...+..+...+..+.|+ |++ .+|++++.|
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs-~D~~v~lWd~~~~~~~--~~~~~l~~h~~~V~~v~~s-----p~~~~~~~~las~s~D 237 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGG-CDNLIKLWKEEEDGQW--KEEQKLEAHSDWVRDVAWA-----PSIGLPTSTIASCSQD 237 (316)
T ss_dssp -----CCSCCCCCCCBEECCB-TTSBCCEEEECTTSCE--EEEECCBCCSSCEEEEECC-----CCSSCSCCEEEEEETT
T ss_pred cccccccccCccccceEEEec-CCCeEEEEEeCCCCcc--ceeeecccCCCceEEEEec-----CCCCCCCceEEEEcCC
Confidence 36788777 6999999999754211 1233344444556667776 775 899999999
Q ss_pred CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcE
Q 006808 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (630)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (630)
|.|+||++.+...-. .. ...+..|...|+
T Consensus 238 ~~v~iw~~~~~~~~~------------------~~---------------------------------~~~~~~~~~~v~ 266 (316)
T 3bg1_A 238 GRVFIWTCDDASSNT------------------WS---------------------------------PKLLHKFNDVVW 266 (316)
T ss_dssp CEEEEEECSSTTCCC------------------CB---------------------------------CCEEEECSSCEE
T ss_pred CeEEEEEccCccccc------------------hh---------------------------------hhhhhcCCCcEE
Confidence 999999986531100 00 001225667899
Q ss_pred EEeecCCcceeeccccceeccccceec
Q 006808 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+++|+|+|.+| ++++.|+++++|+..
T Consensus 267 ~v~~sp~g~~l-as~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSITANIL-AVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECTTTCCE-EEEESSSCEEEEEEC
T ss_pred EEEEcCCCCEE-EEEcCCCeEEEEEEC
Confidence 99999999999 999999999999863
No 89
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=5.3e-28 Score=244.22 Aligned_cols=246 Identities=17% Similarity=0.189 Sum_probs=196.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|+|++|++|+.|+.|++|+...+........+... ..+..+.+.
T Consensus 86 ~~~V--~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~------ 139 (340)
T 4aow_A 86 SHFV--SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD------------------VLSVAFSSD------ 139 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------------EEEEEECTT------
T ss_pred CCCE--EEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc------------------eeEEEEeec------
Confidence 4577 55699999999999999999999999988877666543322 223333332
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC--CEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..|++|+.||.+++||+...........+|...+..++|++++ .++++++.|+.|++||+.+++++..+.+|..
T Consensus 140 ---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 140 ---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp ---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 67799999999999999988877666667899999999998864 5688999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc-
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA- 237 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~- 237 (630)
.|++++|+|++++|++++ +.|++||+.+++.+..+.. ...|.++.|+|++.++ +++ .|+.|++||+.+......
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~~~~~~~~~ 293 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAA-TGPSIKIWDLEGKIIVDEL 293 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEE-ETTEEEEEETTTTEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-ecc-CCCEEEEEECCCCeEEEec
Confidence 999999999999999998 8999999999999888874 4689999999987655 555 499999999987653210
Q ss_pred ---eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 238 ---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 238 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
........+...+..+.|+ |+|++|++|+.||.|+|||+.+|.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWS-----ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 0011112233445666776 999999999999999999999885
No 90
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-28 Score=249.28 Aligned_cols=236 Identities=14% Similarity=0.081 Sum_probs=184.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+...+.+++.+|++|+.||+|++||+.+++.+..+. ...+..+ .|.+ .
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~------------------~~~~----------~-- 87 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTG------------------GEHP----------A-- 87 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTT------------------CCCC----------S--
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceee------------------eeCC----------c--
Confidence 334566788999999999999999999999887765 1222222 2221 2
Q ss_pred EEEEeCCCeEEEEEcc---------CCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 89 LVLGTGGGDVLALAVS---------AGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~---------~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+++++.|+.|++|+.. +++.+.....+|..+|.+++|+| +++++++++.||+|++||+.+++++..+..
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 7888889998888655 55555555557888999999999 999999999999999999999998776644
Q ss_pred -CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee-eEeec-CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 158 -STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 158 -~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~-~~~~~-h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+...+.+++|+|++.+|++|+ |.|++||+++++.+ ..+.+ |..+|++++|+|++.+|++++ ++.|++||+++.
T Consensus 168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~ 245 (343)
T 3lrv_A 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKD 245 (343)
T ss_dssp CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSS
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCC
Confidence 445899999999999999988 89999999999887 78887 999999999999999999887 449999999987
Q ss_pred ccccceeeeeecCCceee--eeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCcc
Q 006808 233 KKQSASCVLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE 285 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~ 285 (630)
+... .+..+..+...+ .+++|+ |+|.+|++++. |+.++||++....
T Consensus 246 ~~~~--~~~~~~~~~~~~~~~~~~~~-----~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 246 VGTL--AYPTYTIPEFKTGTVTYDID-----DSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TTCB--SSCCCBC-----CCEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred Ccce--eecccccccccccceEEEEC-----CCCCEEEEecCCCCcEEEEEEcccc
Confidence 6431 111111111111 346676 99999999998 9999999986654
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=5.4e-29 Score=253.28 Aligned_cols=250 Identities=11% Similarity=0.143 Sum_probs=194.7
Q ss_pred CcccceeEeEECCC---CCEEEEeeCCCcEEEEECCCCc-EEEEecccccccccccccccccccccccceeeEEecc---
Q 006808 3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS--- 75 (630)
Q Consensus 3 s~~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~--- 75 (630)
.++| .+++|+|+ |++|++|+.||.|++||+.+++ .+..+.+|...+ .++.|.+
T Consensus 65 ~~~v--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~ 124 (357)
T 3i2n_A 65 AKPI--KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEII------------------NAIDGIGGLG 124 (357)
T ss_dssp SSCE--EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCE------------------EEEEEESGGG
T ss_pred cCcE--EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccce------------------EEEeeccccc
Confidence 3577 56699999 7999999999999999999887 777777655444 4454432
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCe-eeEEccCCCC----CCEEEEE----EecCCCEEEEEeCCCcEEEEeC
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHP----GGVSAIS----FATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~-~~~~~~~~h~----~~v~~~~----~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.++. +.+|++++.+|.|++||+.++. .+..+ ..|. ..|.+++ |+|+++++++++.||.|++||+
T Consensus 125 ~s~~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 125 IGEG------APEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp CC-C------CCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred cCCC------ccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence 1222 7789999999999999999887 44333 2333 3899998 6789999999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEcc---CCCEEEEeC--CeEEEEECCCCceeeEee-----cCCCCeEEEEEeeCCc-EEE
Q 006808 147 LTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGK-YVL 215 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p---~~~~l~~~~--g~i~lwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~-~l~ 215 (630)
++++.... ..|...|.+++|+| ++.++++++ |.|++||+++++.+..+. +|...|++++|+|+++ +|+
T Consensus 198 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 198 RNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp TTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred ccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence 99887554 55788999999999 899999988 899999999887665554 8999999999999998 677
Q ss_pred EEeeCCCeEEEEEcCCCcccc--------------ceeeeeecCCceeeeeEEecCCccCCCCCEEE-EEecCCcEEEEE
Q 006808 216 SSAVGERYIALWRTDGVKKQS--------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL-AISETGVCYIWY 280 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s~dg~i~iwd 280 (630)
+++ .|+.|++||+..+.... ...+..+..+...+..+.|+ |++.+|+ +++.||.|+|||
T Consensus 277 ~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 277 TAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-----PDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEE
T ss_pred EEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc-----CCCCeEEEEecCCCcEEEEE
Confidence 766 79999999998654220 01333444445556667776 8999888 899999999999
Q ss_pred cCCccc
Q 006808 281 GQNIEE 286 (630)
Q Consensus 281 ~~~~~~ 286 (630)
+.+++.
T Consensus 351 ~~~~~~ 356 (357)
T 3i2n_A 351 VTKLNK 356 (357)
T ss_dssp ECC---
T ss_pred CCCccc
Confidence 987654
No 92
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-29 Score=269.71 Aligned_cols=252 Identities=8% Similarity=0.093 Sum_probs=188.6
Q ss_pred cccceeEeEECCC------CCEEEEeeCCCcEEEEECCCCcEEE--EecccccccccccccccccccccccceeeEEecc
Q 006808 4 SNIRDILTSFSPA------LDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 4 ~~V~~~~~~fs~d------g~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
+.| .+++|+|+ +.+||+|+.||+|+|||+.++.... .+. .. ..... ..+| ...+++++|.+
T Consensus 208 ~~V--~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~~----~p~~~---l~~h-~~~v~sv~~s~ 276 (524)
T 2j04_B 208 GEV--WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-CE----KPSLT---LSLA-DSLITTFDFLS 276 (524)
T ss_dssp CSE--EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-CC----SCSEE---ECCT-TTCEEEEEESS
T ss_pred CcE--EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-ec----CceEE---EEcC-CCCEEEEEecC
Confidence 567 44599997 5799999999999999998764320 000 00 00000 1133 24678899975
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEE--EEecCC-CEEEEEeCCCcEEEEeCCCCcee
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAI--SFATHG-SCIYSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~--~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~ 152 (630)
+..|++|+.||+|++||+.++........+|...|+++ +|+|+| .+|++|+.|++|++||++++++.
T Consensus 277 ----------~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 277 ----------PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp ----------SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred ----------CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 33699999999999999998754434446899999999 578887 89999999999999999998887
Q ss_pred EEeecCCC--CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 153 GKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 153 ~~~~~~~~--~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.++.+|.. .|.+++|+|++..+++++ ++|++||++++.++.++.+|.+.|++++|+|+|++|++++ .|++|++|+
T Consensus 347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dgtv~lwd 425 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADGSLIITN 425 (524)
T ss_dssp CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTTEEECCB
T ss_pred cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCCEEEEEe
Confidence 77776653 588999999999999887 7999999999998888999999999999999999999987 699999999
Q ss_pred cCCCccccce---------ee------------------------------eeecCCceeeeeEEecCCccCCCC---CE
Q 006808 229 TDGVKKQSAS---------CV------------------------------LAMEHPAVFMDCRCIDNGGVDDAG---LY 266 (630)
Q Consensus 229 ~~~~~~~~~~---------~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~ 266 (630)
+......... .+ ..+..+...+..+.|+ |++ .+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs-----p~~~~~~~ 500 (524)
T 2j04_B 426 AARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN-----ETSAGGKC 500 (524)
T ss_dssp SCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC-----CSTTTTTE
T ss_pred chHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC-----CCCCccHH
Confidence 7543111000 00 0111112233444555 875 59
Q ss_pred EEEEecCCcEEEEEcC
Q 006808 267 VLAISETGVCYIWYGQ 282 (630)
Q Consensus 267 l~s~s~dg~i~iwd~~ 282 (630)
+++|+.+|.|+||++.
T Consensus 501 lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 501 YAFSNSAGLLTLEYLS 516 (524)
T ss_dssp EEEECTTSEEEEEECS
T ss_pred HHhhccCceEEEEEcc
Confidence 9999999999999974
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-28 Score=258.66 Aligned_cols=255 Identities=14% Similarity=0.035 Sum_probs=195.6
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEeccccccccccccc------------------------
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYG------------------------ 56 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s------------------------ 56 (630)
.|+ -+++|+|+|++|+++ .++.|++||+.+|+ .+..+..+........+.
T Consensus 5 ~p~--~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPL--QNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCC--CEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccE--EEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 477 445999999977666 46899999999999 777776443210000000
Q ss_pred ------------ccc-cccccccceeeEEecccccccccccCCcEE-EEEeCCCeEEEEEcc--CCeeeEEcc-CCCCCC
Q 006808 57 ------------NRL-EREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGGDVLALAVS--AGQLKWRLS-DCHPGG 119 (630)
Q Consensus 57 ------------~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g~v~iwd~~--~~~~~~~~~-~~h~~~ 119 (630)
+.. ..+| ...+.+++|.+. +.+| ++|+.+|.|++||+. ++..+..+. ..|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~d---------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 151 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPI-YSYIRNLRLTSD---------ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKR 151 (450)
T ss_dssp ------------------CC-CCCEEEEEECTT---------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSC
T ss_pred ccccccCccccCCCCCCCcc-CCceEEEEEcCC---------CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCC
Confidence 000 0011 225889999886 5554 889999999999999 777665543 257789
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE----EeecCCCCeEEEEEccC---CCEEEEeC--CeEEEEECCCCc
Q 006808 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----KFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHK 190 (630)
Q Consensus 120 v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~l~~~p~---~~~l~~~~--g~i~lwd~~~~~ 190 (630)
|++++|+|+|++|++++.+|.|++|++.+++... .+.+|...|.+++|+|+ +++|++++ +.|++||+.+++
T Consensus 152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~ 231 (450)
T 2vdu_B 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF 231 (450)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence 9999999999999999999999999998887554 77889999999999999 99999988 899999999998
Q ss_pred eeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-----------------------CC
Q 006808 191 KMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------------------HP 246 (630)
Q Consensus 191 ~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------~~ 246 (630)
.+.. +.+|...|++++|+ ++++|++++ .|+.|++||+.+++.. ..+... ..
T Consensus 232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 232 IVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNL---STFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp CEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEE---EEEECHHHHGGGCCTTSBC----------CB
T ss_pred eeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEe---eeecchhhhhhhhhhcccccccccccccccc
Confidence 8877 56899999999999 999999988 6999999999987643 112111 11
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG 281 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~ 281 (630)
...+..+.+. |++.+|++++ .++.|+||++
T Consensus 307 ~~~v~~i~~~-----~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 307 EFAVSKIIKS-----KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCCEEEEEEC-----SSSSEEEEEETTCSEEEEEEE
T ss_pred eEEEEEEEEe-----CCCCEEEEEECCCCeEEEEEe
Confidence 2234455665 8999999998 8999999998
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.4e-29 Score=258.36 Aligned_cols=196 Identities=11% Similarity=0.152 Sum_probs=153.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.++. ....+.+|.. .+.++.|.+.
T Consensus 55 ~~~v--~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~--- 111 (377)
T 3dwl_C 55 DKIV--TCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR------------------AATFVRWSPN--- 111 (377)
T ss_dssp SSCE--EEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS------------------CEEEEECCTT---
T ss_pred CceE--EEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC------------------ceEEEEECCC---
Confidence 4577 566999999999999999999999999877 4444444433 4556666653
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCee---eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC---------
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------- 147 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~--------- 147 (630)
+.+|++|+.+|.|++||+.++.. ...+...|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 112 ------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 112 ------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ------SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred ------CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 67899999999999999998873 445543499999999999999999999999999999985
Q ss_pred ---------CCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce----eeEeecCCCCeEEEEEeeCCc
Q 006808 148 ---------TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGK 212 (630)
Q Consensus 148 ---------~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~ 212 (630)
.++++..+ .|...|.+++|+|++++|++++ |.|++||+.+++. +..+.+|..+|.+++|+|+++
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 264 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA 264 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC
Confidence 35566667 8889999999999999999988 8999999999987 788899999999999999999
Q ss_pred EEEEEeeCCCeEEEEEcC
Q 006808 213 YVLSSAVGERYIALWRTD 230 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~ 230 (630)
+|++++ .++ +.+|+..
T Consensus 265 ~l~~~~-~~~-~~~~~~~ 280 (377)
T 3dwl_C 265 IVAAGY-NYS-PILLQGN 280 (377)
T ss_dssp EEEEES-SSS-EEEECCC
T ss_pred EEEEEc-CCc-EEEEEeC
Confidence 887765 455 5577765
No 95
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.5e-28 Score=260.05 Aligned_cols=242 Identities=15% Similarity=0.216 Sum_probs=202.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++ +|++|+.||+|++||+.+++.+..+.+|... +.++.|.+...
T Consensus 162 ~~~V--~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~------------------v~~l~~~~~~~---- 216 (464)
T 3v7d_B 162 DGGV--WALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST------------------VRCLDIVEYKN---- 216 (464)
T ss_dssp SSCE--EEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC------------------EEEEEEEESSS----
T ss_pred CcCE--EEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc------------------cEEEEEecCCC----
Confidence 4678 556999998 9999999999999999999999888765543 44566654221
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeee----------------------EEccCCCCCCEEEEEEecCCCEEEEEeCCCc
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLK----------------------WRLSDCHPGGVSAISFATHGSCIYSAGADGM 140 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~----------------------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 140 (630)
+.++++|+.+|.|++||+.++... .....+|...|.++ +++++++++++.||.
T Consensus 217 ---~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~ 291 (464)
T 3v7d_B 217 ---IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNT 291 (464)
T ss_dssp ---CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSC
T ss_pred ---CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCe
Confidence 678999999999999999877532 23445788888887 567889999999999
Q ss_pred EEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 141 VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 141 v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
|++||+.+++++..+.+|...|.+++|+|++.++++++ |.|++||+.+++++..+.+|...|.++.|+ +.++++++
T Consensus 292 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 369 (464)
T 3v7d_B 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA 369 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe
Confidence 99999999999999999999999999999999999998 899999999999999999999999999997 57888887
Q ss_pred eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
.|+.|++||+.+.... .... ........+++ |++.+|++|+ ||.|++||+.+++.+..
T Consensus 370 -~dg~v~vwd~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 370 -ADGSIRGWDANDYSRK-----FSYH-HTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp -TTSEEEEEETTTCCEE-----EEEE-CTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred -CCCcEEEEECCCCcee-----eeec-CCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 6999999999986532 2222 33344555665 8899999988 89999999999988764
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1e-27 Score=250.05 Aligned_cols=243 Identities=16% Similarity=0.278 Sum_probs=199.5
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .+++|+|+|++||+|+.||+|+|||+.+++++..+.+|.. .+.++.|.
T Consensus 148 ~~V--~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~------------------~v~~~s~~--------- 198 (420)
T 4gga_A 148 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA------------------RVGSLSWN--------- 198 (420)
T ss_dssp CCE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS------------------CEEEEEEE---------
T ss_pred CcE--EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC------------------ceEEEeeC---------
Confidence 457 5669999999999999999999999999999988875543 34455553
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc----eeEEeecCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAST 159 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~ 159 (630)
+.++++|+.++.+++||............+|...+..+.|+|+|.++++++.|+.+++|+..+++ .+..+..|.
T Consensus 199 --~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 199 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred --CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence 56799999999999999988766555556899999999999999999999999999999998765 355677788
Q ss_pred CCeEEEEEccCCC-EEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe-eCCCeEEEEEcCCCc
Q 006808 160 KGISCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK 233 (630)
Q Consensus 160 ~~v~~l~~~p~~~-~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~-~~d~~i~vwd~~~~~ 233 (630)
..|.+++|+|.+. ++++++ ++|++||+.+++++..+..| ..+.++.|+|++..+++++ ..|+.|++||+.+++
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 9999999999654 555543 79999999999998888754 5788999999999888764 358999999999876
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
. +..+..+...+..++|+ |+|.+|++|+.||+|+|||+......+
T Consensus 356 ~-----v~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 356 K-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred E-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCCccc
Confidence 3 33444444556677777 999999999999999999987665443
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-28 Score=252.65 Aligned_cols=246 Identities=13% Similarity=0.130 Sum_probs=196.9
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEcc--CCeeeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVC 142 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~--~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~ 142 (630)
.+++++|.+. +.+|++|+.+|.|++|++. ++..+..+ .+|...|++++|+++ +++|++++.||.|+
T Consensus 13 ~v~~~~~s~~---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 13 LIHDAVLDYY---------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp CEEEEEECSS---------SSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEEEEEcCC---------CCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 4556666554 7789999999999999998 44444344 579999999999976 89999999999999
Q ss_pred EEeCCCCc--eeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEee-----
Q 006808 143 EIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD----- 209 (630)
Q Consensus 143 iwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp----- 209 (630)
+||+.+++ .+..+..|...|.+++|+|+ +.++++++ +.|++||+.++. ....+.+|...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999987 77778889999999999999 89999988 899999998874 3445678999999999999
Q ss_pred --------CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC---CCEEEEEecCCcEEE
Q 006808 210 --------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYI 278 (630)
Q Consensus 210 --------~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~dg~i~i 278 (630)
++.+|++++ .|+.|++||++.+... ......+..+...+..+.|+ |+ +.+|++++.||.|++
T Consensus 163 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~~~~s-----p~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp -------CTTCEEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEE
T ss_pred cccccCCCCCCEEEEEe-CCCeEEEEEecCCCcc-eeeEEEEecccCcEeEEEEC-----CCCCCCCeEEEEeCCCEEEE
Confidence 688998887 6999999999876532 12233444445556677776 88 899999999999999
Q ss_pred EEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
||+.++.... ..... ....|...|.+++|+
T Consensus 236 wd~~~~~~~~-----~~~~~---------------------------------------------~~~~~~~~v~~~~~s 265 (379)
T 3jrp_A 236 WTQDNEQGPW-----KKTLL---------------------------------------------KEEKFPDVLWRASWS 265 (379)
T ss_dssp EEESSTTSCC-----EEEES---------------------------------------------SSSCCSSCEEEEEEC
T ss_pred EeCCCCCccc-----eeeee---------------------------------------------ccccCCCcEEEEEEc
Confidence 9987653210 00000 001466689999999
Q ss_pred CCcceeeccccceeccccceec
Q 006808 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|+|.+| ++++.|+.+++|++.
T Consensus 266 ~~g~~l-~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 266 LSGNVL-ALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSSCCE-EEEESSSSEEEEEEE
T ss_pred CCCCEE-EEecCCCcEEEEeCC
Confidence 999999 899899999999986
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=244.57 Aligned_cols=242 Identities=14% Similarity=0.152 Sum_probs=202.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++++|++++.||.|++||+.+++.+..+. +.. .+.++.|.+.
T Consensus 74 ~~~v--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~------------------~v~~~~~~~~------ 126 (369)
T 3zwl_B 74 TGTI--WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV------------------PVKRVEFSPC------ 126 (369)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS------------------CEEEEEECTT------
T ss_pred CCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC------------------CeEEEEEccC------
Confidence 4577 556999999999999999999999999999888775 322 4556666654
Q ss_pred ccCCcEEEEEeCC-----CeEEEEEccCCee-----------eEEccCCCCC--CEEEEEEecCCCEEEEEeCCCcEEEE
Q 006808 83 KLGSSLLVLGTGG-----GDVLALAVSAGQL-----------KWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEI 144 (630)
Q Consensus 83 ~~~~~~l~~~~~~-----g~v~iwd~~~~~~-----------~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~dg~v~iw 144 (630)
+.++++++.+ |.|.+||+..+.. ...+ ..|.. .+.+++|+|++++|++++.||.|++|
T Consensus 127 ---~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 127 ---GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp ---SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred ---CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 7789999998 9999999987642 1111 24555 89999999999999999999999999
Q ss_pred eCCC-CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 145 DPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 145 d~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
|+.+ ++.+..+..|...|.+++|+|++.+|++++ +.|++||+.+++.+..+. +...+.+++|+|+++++++++ .+
T Consensus 203 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~ 280 (369)
T 3zwl_B 203 DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-GQ 280 (369)
T ss_dssp ETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-CC
T ss_pred ECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-cC
Confidence 9998 788889999999999999999999999987 899999999999888887 788999999999999999988 46
Q ss_pred C--------------eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 222 R--------------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 222 ~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
+ .+++||+.+++.. ..+..+...+..+.|+ |++.+|++++.||.|++|++..+...
T Consensus 281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 281 EAKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAIS-----PQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp C-------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred CCceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEEC-----CCCCEEEEEcCCCeEEEEECccccch
Confidence 6 8999999887643 2333344456667776 99999999999999999999876543
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.1e-28 Score=254.69 Aligned_cols=248 Identities=13% Similarity=0.196 Sum_probs=194.3
Q ss_pred CcccceeEeEECCC-CCEEEEeeCCCcEEEEECCC----------CcEEEEecccccccccccccccccccccccceeeE
Q 006808 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLK----------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (630)
Q Consensus 3 s~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (630)
.++| .+++|+|+ +.+||+|+.||.|+||++.+ ......+.+|.. .++++
T Consensus 128 ~~~v--~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~l 187 (430)
T 2xyi_A 128 EGEV--NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK------------------EGYGL 187 (430)
T ss_dssp SSCC--SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS------------------CCCCE
T ss_pred CCcE--EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC------------------CeEEE
Confidence 4578 45599997 68999999999999999976 344555544433 45667
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCCeee------EEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEE
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEI 144 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~------~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iw 144 (630)
.|.+.. ..+|++|+.+|.|++|++.++... .....+|...|.+++|+| ++..|++++.||.|++|
T Consensus 188 ~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 188 SWNPNL--------NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp EECTTS--------TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EeCCCC--------CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 776653 338999999999999999874321 123357999999999999 67889999999999999
Q ss_pred eCCCC---ceeEEeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCC-CceeeEeecCCCCeEEEEEeeCCcE-EEE
Q 006808 145 DPLTG---SLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKY-VLS 216 (630)
Q Consensus 145 d~~~~---~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~-l~~ 216 (630)
|++++ +.+..+..|...|++++|+|++. ++++|+ |.|++||+++ +.++..+.+|...|++++|+|++++ |++
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 99987 57778888999999999999887 577776 8999999998 5678889999999999999999975 555
Q ss_pred EeeCCCeEEEEEcCCCcccc---------ceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCc
Q 006808 217 SAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~ 284 (630)
++ .|+.|++||+....... ....+....+...+..+.|+ |++. +|++++.||.|+||++...
T Consensus 340 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 340 SG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-----PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECHH
T ss_pred Ee-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-----CCCCCEEEEEECCCCEEEeEcccc
Confidence 55 79999999998732110 01334444444455666666 8888 8999999999999998654
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.4e-27 Score=242.80 Aligned_cols=295 Identities=9% Similarity=-0.018 Sum_probs=204.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|||++||+|+.++ ++||++.++........+ .+..+.|.+..
T Consensus 19 ~~~V--~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~----- 70 (355)
T 3vu4_A 19 SNPV--TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--------------------HLSKVRMLHRT----- 70 (355)
T ss_dssp CCCC--CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--------------------CCCEEEECTTS-----
T ss_pred CCce--EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--------------------CeEEEEEcCCC-----
Confidence 4678 5669999999999998775 789999887765443211 13344444332
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (630)
..++++++.++.|++||+.+++.+..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. +
T Consensus 71 ---~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~ 139 (355)
T 3vu4_A 71 ---NYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F 139 (355)
T ss_dssp ---SEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred ---CEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence 3344667788999999999999887663 67799999998763 4444 4789999999988 77776665 4
Q ss_pred eEEEEEccCCCEEEEe--C--CeEEEEECCCCc----------------eeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 162 ISCMAVSSDGKMLATA--A--GQLKTFNCSDHK----------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~--~--g~i~lwd~~~~~----------------~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
...++++| .+++++ + |.|++||+.++. .+..+.+|..+|++++|+|+|++|++++ .|
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~d 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-QD 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-CC
Confidence 45667777 566664 3 899999999865 2678899999999999999999999988 69
Q ss_pred Ce-EEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeecc
Q 006808 222 RY-IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (630)
Q Consensus 222 ~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (630)
++ |++||+.+++.. ..+..+.+...+..+.|+ |++.+|++++.||.|+|||+..+...+... ...
T Consensus 217 ~~~v~iwd~~~~~~~---~~~~~g~h~~~v~~~~~s-----~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~-----~~~- 282 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLV---REFRRGLDRADVVDMKWS-----TDGSKLAVVSDKWTLHVFEIFNDQDNKRHA-----LKG- 282 (355)
T ss_dssp CSEEEEEETTTCCEE---EEEECTTCCSCEEEEEEC-----TTSCEEEEEETTCEEEEEESSCCSCCCSEE-----TTT-
T ss_pred CCEEEEEECCCCcEE---EEEEcCCCCCcEEEEEEC-----CCCCEEEEEECCCEEEEEEccCCCCccccc-----ccc-
Confidence 98 999999987643 222223134456667777 999999999999999999997653211110 000
Q ss_pred CCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.+. .++. .+. ...+.-...+......++|++||.+| ++++.|+.+++|++.
T Consensus 283 -~~~~~-----------~~~~---~~~-----------~~~~~~~~~~~~~~~~~a~~~d~~~l-~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 283 -WINMK-----------YFQS---EWS-----------LCNFKLSVDKHVRGCKIAWISESSLV-VVWPHTRMIETFKVV 335 (355)
T ss_dssp -TEECC-----------CCCC---SSC-----------SEEEECCCCTTCCCCEEEESSSSEEE-EEETTTTEEEEEEEE
T ss_pred -eeecc-----------cccc---ccc-----------eeEEEeccCCCCCceEEEEeCCCCEE-EEEeCCCeEEEEEEE
Confidence 00000 0000 000 00000001122334679999999999 888889999999874
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=5e-28 Score=249.16 Aligned_cols=239 Identities=15% Similarity=0.180 Sum_probs=188.1
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+| ++++|++|+.|+.|++||+.+ .....+..+. + ....+.+++|.+.
T Consensus 118 ~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--------------~-~~~~v~~~~~~~~----- 174 (383)
T 3ei3_B 118 GDAI--TGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD--------------S-WDYWYCCVDVSVS----- 174 (383)
T ss_dssp TCBE--EEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC--------------C-SSCCEEEEEEETT-----
T ss_pred CCce--eEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC--------------C-CCCCeEEEEECCC-----
Confidence 4577 5669999 789999999999999999985 5555554321 1 1235677888765
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCC----CceeEEee
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT----GSLLGKFR 156 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~----~~~~~~~~ 156 (630)
+.+|++|+.+|.|++||+. ++.+..+ .+|...|.+++|+|+++ +|++++.|+.|++||+++ +.++..+
T Consensus 175 ----~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~- 247 (383)
T 3ei3_B 175 ----RQMLATGDSTGRLLLLGLD-GHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM- 247 (383)
T ss_dssp ----TTEEEEEETTSEEEEEETT-SCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-
T ss_pred ----CCEEEEECCCCCEEEEECC-CCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-
Confidence 7789999999999999994 5555455 47999999999999999 899999999999999987 6666666
Q ss_pred cCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCC-----------------CCeEEEEEeeCCcEEEE
Q 006808 157 ASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----------------GAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 157 ~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----------------~~v~~l~~sp~~~~l~~ 216 (630)
.|...|.+++|+| ++.+|++++ +.|++||+++++.+..+.+|. ..+..++|+|++++ +
T Consensus 248 ~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s 325 (383)
T 3ei3_B 248 PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--L 325 (383)
T ss_dssp ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--C
T ss_pred cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--c
Confidence 5889999999999 999999988 899999999988877776553 23444666777766 4
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
++ .|+.|++||+.+++.. ..+...+....+.++.|+ |++.+|++|+ ||.|+|||+.+
T Consensus 326 ~s-~d~~i~iwd~~~~~~~---~~l~~~~~~~~~~~~~~s-----~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 326 LN-DKRTIDIYDANSGGLV---HQLRDPNAAGIISLNKFS-----PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TT-CCCCEEEEETTTCCEE---EEECBTTBCSCCCEEEEC-----TTSSEEEEEE-TTEEEEEECC-
T ss_pred cC-CCCeEEEEecCCCcee---eeecCCCCCceEEEEEEe-----cCccEEEEec-CCcEEEEecCC
Confidence 44 6999999999987743 233322345566676777 9999999997 99999999864
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=6.2e-28 Score=250.17 Aligned_cols=246 Identities=14% Similarity=0.210 Sum_probs=197.3
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCC-------cEEEEecccccccccccccccccccccccceeeEEec
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (630)
.++| .+++|+| ++++||+|+.||+|+|||+.++ ..+..+.+|.. .+.++.|.
T Consensus 81 ~~~V--~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~ 140 (402)
T 2aq5_A 81 TAPV--LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK------------------RVGIVAWH 140 (402)
T ss_dssp SSCE--EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS------------------CEEEEEEC
T ss_pred CCCE--EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC------------------eEEEEEEC
Confidence 4678 5569999 9999999999999999999987 44555554433 45667776
Q ss_pred ccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
+.. ..+|++|+.||.|++||+.+++.+..+. .+|...|.+++|+|++++|++++.||.|++||+++++.+.
T Consensus 141 p~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 141 PTA--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp SSB--------TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred cCC--------CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence 653 3689999999999999999999887764 5799999999999999999999999999999999999999
Q ss_pred Ee-ecCCCC-eEEEEEccCCCEEEEe---C--CeEEEEECCCCce-eeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 154 KF-RASTKG-ISCMAVSSDGKMLATA---A--GQLKTFNCSDHKK-MQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 154 ~~-~~~~~~-v~~l~~~p~~~~l~~~---~--g~i~lwd~~~~~~-~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
.+ ..|... +.++.|+|++.+|+++ + +.|++||++++.. +.... .|...+.+++|+|++++|+++++.|+.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 88 677765 8999999999999998 4 8999999998764 33333 5778899999999999998777579999
Q ss_pred EEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
++|++.+++.. ........+ ...+..+.|+ |++.++++ .++.+++|++.++.
T Consensus 293 ~i~d~~~~~~~-~~~l~~~~~-~~~v~~~~~s-----p~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 293 RYFEITSEAPF-LHYLSMFSS-KESQRGMGYM-----PKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEECSSTTC-EEEEEEECC-SSCCSEEEEC-----CGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEecCCCcc-eEeeccccc-CCcccceEEe-----ccccccee--cceeEEEEEcCCCc
Confidence 99999987631 011222222 3445566666 88888764 56799999987653
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.1e-27 Score=232.93 Aligned_cols=237 Identities=13% Similarity=0.204 Sum_probs=191.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCC---cEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| .+++|+|++++|++|+.||.|++|++... +....+.+|. ..+.++.|.
T Consensus 59 ~~~v--~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~------------------~~i~~~~~~----- 113 (313)
T 3odt_A 59 QGFL--NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ------------------GNVCSLSFQ----- 113 (313)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS------------------SCEEEEEEE-----
T ss_pred CccE--EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc------------------cCEEEEEec-----
Confidence 4567 55699999999999999999999998754 3344444332 245667761
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeec-
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA- 157 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~- 157 (630)
+..+++++.+|.|++|| .+.....+ ..|...|.++.|+| +++++++++.||.|++|| .++....+..
T Consensus 114 ------~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~ 182 (313)
T 3odt_A 114 ------DGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI 182 (313)
T ss_dssp ------TTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred ------CCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence 66899999999999999 55555444 46999999999998 999999999999999999 5667777777
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|...+.+++|+|++. +++++ |.|++||+++++.+..+.+|..+|++++|+|++ .+++++ .|+.|++||+.+++..
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKENGSLK 259 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTTCCEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCCCcee
Confidence 888999999999998 65655 899999999999999999999999999999999 577777 6999999999988643
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
..+..+...+..+.|+ |++. +++++.||.|++|++.+++.+..
T Consensus 260 -----~~~~~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 260 -----QVITLPAISIWSVDCM-----SNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp -----EEEECSSSCEEEEEEC-----TTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred -----EEEeccCceEEEEEEc-----cCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 2333344455666676 8888 66799999999999988766543
No 104
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=3e-28 Score=255.27 Aligned_cols=246 Identities=15% Similarity=0.178 Sum_probs=184.0
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+| ++++|++|+.||+|+|||+.++........+. ....+.++.|.+.
T Consensus 164 ~~~V--~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~----- 220 (435)
T 4e54_B 164 GGSI--TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT----------------INIWFCSLDVSAS----- 220 (435)
T ss_dssp SCCC--CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS----------------CSCCCCCEEEETT-----
T ss_pred CCCE--EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC----------------CCccEEEEEECCC-----
Confidence 4688 5559998 78999999999999999998655433222111 1223456666654
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEe---ec
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF---RA 157 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~---~~ 157 (630)
+.+|++|+.+|.|++||+.... +.. +.+|...|++++|+|++. +|++|+.|++|++||+++++....+ .+
T Consensus 221 ----~~~l~~g~~dg~i~~wd~~~~~-~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~ 294 (435)
T 4e54_B 221 ----SRMVVTGDNVGNVILLNMDGKE-LWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP 294 (435)
T ss_dssp ----TTEEEEECSSSBEEEEESSSCB-CCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCB
T ss_pred ----CCEEEEEeCCCcEeeeccCcce-eEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeee
Confidence 7789999999999999997543 333 358999999999999876 6889999999999999887654443 56
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCC------CeEEEEEeeCCcEEEEEee----------
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG------AVRFMTFSDNGKYVLSSAV---------- 219 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~------~v~~l~~sp~~~~l~~~~~---------- 219 (630)
|...|++++|+|+|.+|++++ |.|++||+.++.....+..|.. .+..+.|+|++.+++++++
T Consensus 295 h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 374 (435)
T 4e54_B 295 HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP 374 (435)
T ss_dssp CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSST
T ss_pred ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEe
Confidence 888999999999999999998 8999999999988777765542 2334567777766666543
Q ss_pred -CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 220 -GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 220 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
.++.|++||..+++.. ..+...|...+..+..|+ |+|.+|++|+ |+.|+||++++++.
T Consensus 375 ~~~~~i~iwd~~~g~~~---~~l~~~~~~~v~s~~~fs-----pdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 375 YELRTIDVFDGNSGKMM---CQLYDPESSGISSLNEFN-----PMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp TCCCCEEEECSSSCCEE---EEECCSSCCCCCCEEEEC-----TTSSCEEEEC-SSEEEECCCC----
T ss_pred cCCCEEEEEECCCCcEE---EEEeCCCCCcEEEEEEEC-----CCCCEEEEEc-CCcEEEEECCcCee
Confidence 3457999999988744 333334555555555677 9999998876 78999999988865
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2.3e-27 Score=248.05 Aligned_cols=255 Identities=13% Similarity=0.151 Sum_probs=195.8
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC----------CeeeEEccCCCCCCEEEEEEecCCC-EEEE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------GQLKWRLSDCHPGGVSAISFATHGS-CIYS 134 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~----------~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s 134 (630)
..+++++|.+.+ +.+|++++.+|.|++|++.+ ......+ .+|...|++++|+|++. +|++
T Consensus 129 ~~v~~l~~~p~~--------~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 129 GEVNRARYMPQN--------ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp SCCSEEEEETTE--------EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEE
T ss_pred CcEEEEEECCCC--------CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEE
Confidence 467788888754 56899999999999999986 3444444 47999999999999988 9999
Q ss_pred EeCCCcEEEEeCCCCce-------eEEeecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCC---ceeeEeecCCCC
Q 006808 135 AGADGMVCEIDPLTGSL-------LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA 201 (630)
Q Consensus 135 ~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~ 201 (630)
|+.||.|++||+.++.. ...+..|...|.+++|+| ++.+|++++ |.|++||++++ +.+..+..|...
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 99999999999987432 456778999999999999 677888876 89999999987 567778899999
Q ss_pred eEEEEEeeCCcE-EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEE
Q 006808 202 VRFMTFSDNGKY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIW 279 (630)
Q Consensus 202 v~~l~~sp~~~~-l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iw 279 (630)
|++++|+|++.+ +++++ .|+.|++||++..... +..+..+...+..+.|+ |++ .+|++++.||.|+||
T Consensus 280 v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~----~~~~~~h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLK----LHSFESHKDEIFQVQWS-----PHNETILASSGTDRRLHVW 349 (430)
T ss_dssp EEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSC----SEEEECCSSCEEEEEEC-----SSCTTEEEEEETTSCCEEE
T ss_pred eEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCC----eEEeecCCCCEEEEEEC-----CCCCCEEEEEeCCCcEEEE
Confidence 999999999985 55555 7999999999885422 23333334445566666 877 578999999999999
Q ss_pred EcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC
Q 006808 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (630)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (630)
|+......... . . ..++ ....+....+|...|.+++|+|
T Consensus 350 d~~~~~~~~~~---------------~------~----~~~~----------------~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 350 DLSKIGEEQST---------------E------D----AEDG----------------PPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp EGGGTTCCCCH---------------H------H----HHHC----------------CTTEEEECCCCSSCEEEEEECS
T ss_pred eCCCCccccCc---------------c------c----cccC----------------CcceEEEcCCCCCCceEEEECC
Confidence 98653221100 0 0 0000 0112223457888999999999
Q ss_pred Ccc-eeeccccceeccccceecc
Q 006808 360 DGV-LLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 360 dg~-~l~~s~s~d~~~~~w~~~~ 381 (630)
++. +| ++++.|+.+++|++..
T Consensus 389 ~~~~~l-~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 NEPWII-CSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSTTEE-EEEETTSEEEEEEECH
T ss_pred CCCCEE-EEEECCCCEEEeEccc
Confidence 999 66 9999999999999854
No 106
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=6.4e-27 Score=246.05 Aligned_cols=264 Identities=16% Similarity=0.241 Sum_probs=209.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+ +++|++|+.||+|++||+.+++.+..+.+|.. .+.++.|.
T Consensus 159 ~~~v--~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~------------------~v~~~~~~-------- 208 (445)
T 2ovr_B 159 TGGV--WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTS------------------TVRCMHLH-------- 208 (445)
T ss_dssp SSCE--EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSS------------------CEEEEEEE--------
T ss_pred CCCE--EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC------------------cEEEEEec--------
Confidence 4567 555786 67999999999999999999999988875543 34455552
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++|+.+|.|++||+.+++.+..+ .+|...|.++.| +++++++++.||.|++||+.+++++..+.+|...|
T Consensus 209 ---~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 209 ---EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp ---TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred ---CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 556999999999999999999887666 479999999999 78899999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.+++| ++.++++++ |.|++||+.+++.+..+.+|...+.++.++ +.++++++ .|+.|++||+.+++.. ..
T Consensus 283 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~~~~~---~~ 354 (445)
T 2ovr_B 283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCL---QT 354 (445)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE---EE
T ss_pred EEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCCCcEE---EE
Confidence 99999 778888887 899999999999999999999999988775 66888887 6999999999887633 12
Q ss_pred eee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC-----ceeEEeeccCCCcccccchhhhh
Q 006808 241 LAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK-----ATKILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i 314 (630)
+.. ..+...+.++.+ ++.+|++|+.||.|++||+.+++.+.... .....+.+ ..++|++. .+
T Consensus 355 ~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~----~l 422 (445)
T 2ovr_B 355 LQGPNKHQSAVTCLQF-------NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR-IRASNTKL----VC 422 (445)
T ss_dssp ECSTTSCSSCEEEEEE-------CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE-EEECSSEE----EE
T ss_pred EccCCCCCCCEEEEEE-------CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE-EEecCCEE----EE
Confidence 211 113334445554 36899999999999999999998766541 11111111 11567666 77
Q ss_pred hhcccccc
Q 006808 315 FAAKLQDI 322 (630)
Q Consensus 315 ~~~~~d~~ 322 (630)
++|+.||.
T Consensus 423 a~~~~dg~ 430 (445)
T 2ovr_B 423 AVGSRNGT 430 (445)
T ss_dssp EEECSSSS
T ss_pred EEcccCCC
Confidence 88888764
No 107
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2.5e-27 Score=241.84 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=158.8
Q ss_pred EeEECCCCCEEEEee--CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+++|||||+++|+++ .|++|+|||+.+++++..+. |...+. +++|.|. +.
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~------------------~v~fspd---------g~ 189 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVK------------------DLHFSTD---------GK 189 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCC------------------EEEECTT---------SS
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceE------------------EEEEccC---------Cc
Confidence 459999999987554 68999999999999988775 333444 4555443 77
Q ss_pred EEEEEeCCCeEEEEEccCCeee-EEccCCCCCCEEEEEEecCCCEEEEEeCCC----cEEEEeCCCCce----eEEeecC
Q 006808 88 LLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCEIDPLTGSL----LGKFRAS 158 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg----~v~iwd~~~~~~----~~~~~~~ 158 (630)
++++++. +.+.+|+..++..+ .....+|...|.+++|+|+|+++++++.|+ .++.|++..+.. ...+..|
T Consensus 190 ~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T 4h5i_A 190 VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR 268 (365)
T ss_dssp EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC
Confidence 7888874 45667776666654 344567889999999999999999999887 688899876643 3457788
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
...|++++|+|+|++||+|+ ++|+|||+.+++++.++ .+|..+|++++|+|||++|++++ .|++|+||++...
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AANTIHIIKLPLN 344 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TTSEEEEEECCTT
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CCCeEEEEEcCCC
Confidence 89999999999999999998 89999999999998886 78999999999999999999988 6999999999754
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.5e-26 Score=242.29 Aligned_cols=280 Identities=15% Similarity=0.080 Sum_probs=213.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|+|++.++++++.++.|++||+.+++....+.... ..+| ...+.++.|.+. +.+
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~-~~~v~~~~~~~~---------~~~ 183 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK------------YKKK-LGFVETISIPEH---------NEL 183 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH------------HHTT-CCEEEEEEEGGG---------TEE
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc------------cccc-CCceeEEEEcCC---------CEE
Confidence 456999988888888889999999999998876432100 0122 224667777443 678
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
+++++.++.|++||+.+++.+..+. .|...+.+++|+|+++.+++ ++.|+.|++||+.+++.+..+..+ ..+.+++|
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~ 261 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLL 261 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEE
T ss_pred EEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEE
Confidence 9999999999999999988876664 68889999999999998854 457999999999999988887754 46899999
Q ss_pred ccCCCEEEEeC----------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 168 SSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 168 ~p~~~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+|+++++++++ +.|++||+.+++.+..+ .|...+.+++|+|+++++++++..++.|++||+.+++..
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-- 338 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-- 338 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--
Confidence 99999888765 38999999999877665 366688999999999887776667999999999976533
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEec---------------CCcEEEEEcCCcccccccCceeEEeeccCC
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------------TGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (630)
..+.+... +..+.++ |+|.+|++++. ||.|++||..+++.+...
T Consensus 339 ---~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~------------ 397 (433)
T 3bws_A 339 ---KSIPVFDK-PNTIALS-----PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW------------ 397 (433)
T ss_dssp ---EEEECSSS-EEEEEEC-----TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE------------
T ss_pred ---EEecCCCC-CCeEEEc-----CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe------------
Confidence 23333333 4456666 89999888876 467888887655432211
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.. ...+.+++|+|||++|.++++.|+.+++|++.
T Consensus 398 -------------------------------------------~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 398 -------------------------------------------EA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp -------------------------------------------EC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred -------------------------------------------cC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 11 22467899999999984445569999999874
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.9e-26 Score=228.21 Aligned_cols=240 Identities=15% Similarity=0.243 Sum_probs=193.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .+++|+|+|++||+|+.||+|+||++.+++++..+.+|...+. ++.+.
T Consensus 68 ~~V--~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~------------------~~~~~--------- 118 (318)
T 4ggc_A 68 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG------------------SLSWN--------- 118 (318)
T ss_dssp CCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE------------------EEEEE---------
T ss_pred CeE--EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE------------------EeecC---------
Confidence 457 5669999999999999999999999999999988876543222 22221
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce----eEEeecCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRAST 159 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~ 159 (630)
+..+++++.++.+.+|+...+........+|...+..+.|+++++++++++.|++|++||+.+++. ......+.
T Consensus 119 --~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 119 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred --CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence 667999999999999999887665555668999999999999999999999999999999987753 34456677
Q ss_pred CCeEEEEEccCCCEEE---EeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe-eCCCeEEEEEcCCCc
Q 006808 160 KGISCMAVSSDGKMLA---TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK 233 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~---~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~-~~d~~i~vwd~~~~~ 233 (630)
..|.+++++|++..++ +++ +.|++||........... +...+..+.|+|++..+++++ +.|+.|++||+.+++
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 8999999999765433 333 799999998887665544 777899999999999887754 358999999999876
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
. +..+..+...+.++.|+ |+|.+|++|+.||+|+|||+....
T Consensus 276 ~-----~~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 276 K-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCCC
T ss_pred E-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCC
Confidence 4 33444445556677777 999999999999999999986543
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=4.6e-27 Score=242.61 Aligned_cols=232 Identities=12% Similarity=0.025 Sum_probs=170.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeE----EccCCCCCCEEEEEEec--------CCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKW----RLSDCHPGGVSAISFAT--------HGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~----~~~~~h~~~v~~~~~s~--------~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
+.++++|+.|++|+|||..++.... ..+.+|.+.|++++|+| ++++|++|+.|++|++||+.++.++.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 5689999999999999999886532 34578999999999998 78899999999999999999998888
Q ss_pred EeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeE-------------------------eecCCCCeEEE
Q 006808 154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK-------------------------FSGHPGAVRFM 205 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~-------------------------~~~h~~~v~~l 205 (630)
.+..|..+|.+++|+|++. +|++++ ++|++||+++++.... ..+|...+.++
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 8888999999999999875 788877 8999999988754322 23577788999
Q ss_pred EEe-eCCcEEEEEeeCCCeEEEEEcCCCccccce--------------eeeeecCCceeeeeEEecCCccCCCCCEEEEE
Q 006808 206 TFS-DNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (630)
Q Consensus 206 ~~s-p~~~~l~~~~~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 270 (630)
.|+ |+++.+++++ .|+.+++||+..++..... ...........+...+++ .+++.++++|
T Consensus 261 ~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sg 335 (393)
T 4gq1_A 261 RWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP----RYMDYFATAH 335 (393)
T ss_dssp EEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS----SCTTEEEEEE
T ss_pred eeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc----CCCCEEEEEE
Confidence 987 7999999887 6999999999876532100 001111122223334443 1345677788
Q ss_pred ecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCC
Q 006808 271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG 350 (630)
Q Consensus 271 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~ 350 (630)
+.||.|+|||..++..+. ....|..
T Consensus 336 s~Dg~V~lwd~~~~~~~~-------------------------------------------------------~~~~~~~ 360 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNS-------------------------------------------------------IPIQLGM 360 (393)
T ss_dssp TTTTEEEEEETTCTTCCE-------------------------------------------------------EEEECSS
T ss_pred CCCCEEEEEECCCCcEEE-------------------------------------------------------EecCCCC
Confidence 889999999987664321 1125666
Q ss_pred CcEEEeecCCcceeeccccceecccccee
Q 006808 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.|.+++|||||++| ++++.++. .+|.+
T Consensus 361 ~V~svafspdG~~L-A~as~~Gv-~lvrL 387 (393)
T 4gq1_A 361 PIVDFCWHQDGSHL-AIATEGSV-LLTRL 387 (393)
T ss_dssp CEEEEEECTTSSEE-EEEESSEE-EEEEE
T ss_pred cEEEEEEcCCCCEE-EEEeCCCe-EEEEE
Confidence 89999999999999 88987665 34433
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=2.5e-26 Score=240.76 Aligned_cols=238 Identities=14% Similarity=0.263 Sum_probs=188.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++| ++++|++|+.||+|++||+.+++.+..+.+|.. .+.++.|.
T Consensus 173 ~~~v--~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~------------------~v~~l~~~-------- 222 (435)
T 1p22_A 173 TGSV--LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE------------------AVLHLRFN-------- 222 (435)
T ss_dssp SSCE--EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS------------------CEEEEECC--------
T ss_pred CCcE--EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC------------------cEEEEEEc--------
Confidence 4567 54466 889999999999999999999999988875544 34455553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeE--EccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..+++|+.+|.|++||+.++.... ....+|...|.+++| +++++++|+.||.|++||+.+++++..+.+|..
T Consensus 223 ---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (435)
T 1p22_A 223 ---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297 (435)
T ss_dssp ---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence 4579999999999999999876542 445689999999999 678999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc--
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-- 236 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~-- 236 (630)
.|.++.|+ +.++++|+ |.|++||+++++++..+.+|...|.+++| ++.+|++++ .||.|++||+.++....
T Consensus 298 ~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~~ 372 (435)
T 1p22_A 298 GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPRAP 372 (435)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTTSC
T ss_pred cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCcccc
Confidence 99999994 57888887 89999999999999999999999999999 688888888 69999999987654210
Q ss_pred --ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 237 --ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
..+...+..+...+..+.+ ++.+|++++.||.|++||+.+....
T Consensus 373 ~~~~~~~~~~~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 373 AGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp TTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC-------
T ss_pred ccchheeeccCCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 0123333333334444444 4688999999999999999776543
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.4e-26 Score=241.63 Aligned_cols=257 Identities=11% Similarity=0.115 Sum_probs=186.5
Q ss_pred cccceeEeEECCCC--CEEEEeeCCCcEEEEECCCCcEEEEec---cccc------cccccccc--------------cc
Q 006808 4 SNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFA---DIAS------TETTSLYG--------------NR 58 (630)
Q Consensus 4 ~~V~~~~~~fs~dg--~~las~s~dg~i~vwd~~~~~~~~~~~---~~~~------~~~~~~~s--------------~~ 58 (630)
++| .+++|+|++ .+|++|+.||+|++||+.++....... .+.+ .+....+. ..
T Consensus 94 ~~V--~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 94 EKI--NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCC--CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred Cce--EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 678 555999998 899999999999999998755432110 0000 00000000 00
Q ss_pred ccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe-eeEE------ccCCCCCCEEEEEEecCC-C
Q 006808 59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWR------LSDCHPGGVSAISFATHG-S 130 (630)
Q Consensus 59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~-~~~~------~~~~h~~~v~~~~~s~~g-~ 130 (630)
+..+| ...+.+++|.+. +.+|++| .||.|++||+.++. .... ...+|...|.+++|+|++ .
T Consensus 172 ~~~~h-~~~v~~~~~~~~---------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 172 FANAH-TYHINSISINSD---------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp ECSCC-SSCCCEEEECTT---------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred eccCC-CcceEEEEEcCC---------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 01133 346778888874 6778888 79999999999543 3322 245799999999999998 9
Q ss_pred EEEEEeCCCcEEEEeCCCCce----eEEeecCCC------------CeEEEEEccCCCEEEEeC-CeEEEEECCC-Ccee
Q 006808 131 CIYSAGADGMVCEIDPLTGSL----LGKFRASTK------------GISCMAVSSDGKMLATAA-GQLKTFNCSD-HKKM 192 (630)
Q Consensus 131 ~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~------------~v~~l~~~p~~~~l~~~~-g~i~lwd~~~-~~~~ 192 (630)
+|++|+.||.|++||+++++. +..+..|.. .|.+++|+|+|++|++++ +.|++||+++ ++++
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCS
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccc
Confidence 999999999999999999887 788888876 899999999999999988 9999999997 8888
Q ss_pred eEeecCCCC---------------eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee-----------------
Q 006808 193 QKFSGHPGA---------------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV----------------- 240 (630)
Q Consensus 193 ~~~~~h~~~---------------v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~----------------- 240 (630)
..+.+|... +..++|+|++++|++++ .|+.|++||+.+++.......
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA 399 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEec-cCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence 889888642 33489999999998887 699999999988764210000
Q ss_pred -----------eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 241 -----------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
....... .+..+.|+ |++.+|++++.++ +++|..
T Consensus 400 ~~~~~~~~~~~~~~~~~~-~i~~~~~~-----p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 400 SGKRKKDEISVDSLDFNK-KILHTAWH-----PKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp SSCCCTTCEEGGGCCTTS-CCCEEEEC-----SSSSEEEEECSSC-EEEEEC
T ss_pred cCCcccccccccccccCC-ceeEEEEC-----CCCCEEEEEecce-eeeecc
Confidence 0001111 23345565 9999999988865 788864
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-26 Score=260.21 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=197.5
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC--eeeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVC 142 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~ 142 (630)
.+++++|.+. +.+|++|+.+|.|++||+..+ .....+ .+|.++|++++|+|+ +++|++|+.||.|+
T Consensus 11 ~V~~l~~s~d---------g~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYY---------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSS---------SCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCC---------CCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4556666554 678999999999999999843 444344 589999999999987 99999999999999
Q ss_pred EEeCCCCc--eeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEee-----
Q 006808 143 EIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD----- 209 (630)
Q Consensus 143 iwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp----- 209 (630)
+||+.+++ .+..+..|...|.+++|+|+ +.++++++ |.|++||+.++. ....+.+|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999887 67778889999999999999 99999988 899999998873 3456678999999999999
Q ss_pred --------CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC---CCEEEEEecCCcEEE
Q 006808 210 --------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYI 278 (630)
Q Consensus 210 --------~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~dg~i~i 278 (630)
++.++++++ .||.|++||++++... ......+..+...+.++.|+ |+ +.+|++++.||.|++
T Consensus 161 ~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~s-----p~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp ------CGGGCCEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEESSSCEEE
T ss_pred ccccccCCCCCEEEEEE-CCCeEEEEeccCCccc-ceeeeeecCCCCcEEEEEec-----cCCCCCCEEEEEecCCEEEE
Confidence 588888888 6999999999876532 12333444445556677776 88 899999999999999
Q ss_pred EEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
||+.++....... +.....|...|.+++|+
T Consensus 234 wd~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~v~~l~~s 263 (753)
T 3jro_A 234 WTQDNEQGPWKKT--------------------------------------------------LLKEEKFPDVLWRASWS 263 (753)
T ss_dssp EEESSSSSCCBCC--------------------------------------------------BSSSSCCSSCCCCEEEC
T ss_pred ecCCCCCCcceeE--------------------------------------------------EeccCCCCCceEEEEEc
Confidence 9987653210000 00011466789999999
Q ss_pred CCcceeeccccceeccccceec
Q 006808 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|+|.++ ++++.|+.+++|++.
T Consensus 264 pdg~~l-~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 264 LSGNVL-ALSGGDNKVTLWKEN 284 (753)
T ss_dssp TTTCCE-EEECSSSCEECCBCC
T ss_pred CCCCEE-EEEcCCCEEEEEecC
Confidence 999999 999999999999986
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=2.4e-25 Score=229.61 Aligned_cols=266 Identities=12% Similarity=0.091 Sum_probs=206.5
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-EEEeCCC
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG 96 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g 96 (630)
.++++++.|+.|++||+.+++++..+..+. .+.+++|.+. +..+ ++++.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-------------------~~~~~~~s~d---------g~~l~~~~~~d~ 54 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-------------------NPMGAVISPD---------GTKVYVANAHSN 54 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTT---------SSEEEEEEGGGT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-------------------CcceEEECCC---------CCEEEEECCCCC
Confidence 367888899999999999999888776432 2456666654 5544 6677899
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE-
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML- 174 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l- 174 (630)
.|++||+.+++.+..+.. ...+.+++|+|+|++++. ++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+
T Consensus 55 ~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred eEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 999999999998876643 348999999999998754 556799999999999998888754 568999999999977
Q ss_pred EEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeee
Q 006808 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (630)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (630)
++++ +.|++||+.+++.+..+..| ..+.+++|+|+++++++++..++.|++||+.+++.. ..+.+.. .+..
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~-~~~~ 204 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEA-APSG 204 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSS-EEEE
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----EEEecCC-Cccc
Confidence 5555 89999999999988888765 456999999999988666657899999999887633 2333333 3455
Q ss_pred EEecCCccCCCCCEEEEEe---cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCcee
Q 006808 253 RCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 329 (630)
+.++ |++.+|++++ .++.|++||+.+++.+...
T Consensus 205 ~~~~-----~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--------------------------------------- 240 (391)
T 1l0q_A 205 IAVN-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--------------------------------------- 240 (391)
T ss_dssp EEEC-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEEE---------------------------------------
T ss_pred eEEC-----CCCCEEEEEecCcCCCcEEEEECCCCeEEEEE---------------------------------------
Confidence 6666 9999999888 6899999998766432110
Q ss_pred EEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
..| ..+.+++|+|||++|.++++.|+.+++|++...
T Consensus 241 ----------------~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 241 ----------------PVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp ----------------ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ----------------ecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 011 135678999999877578888999999998653
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=1.1e-25 Score=233.03 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=189.5
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+| ++.+|++|+.||.|++||+.+++....+.. ...+.++.|.+..++
T Consensus 99 ~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~-- 155 (408)
T 4a11_B 99 RYSV--ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-------------------EETVYSHHMSPVSTK-- 155 (408)
T ss_dssp SSCE--EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-------------------SSCEEEEEECSSCSS--
T ss_pred CCcE--EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-------------------CCceeeeEeecCCCC--
Confidence 4578 5669999 778999999999999999999988776641 224556777766544
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCc-eeEEe----
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS-LLGKF---- 155 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~-~~~~~---- 155 (630)
+.++++++.+|.|++||+.+++.+..+ .+|...|.+++|+|++. .|++++.||.|++||++++. ++..+
T Consensus 156 ----~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 156 ----HCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp ----CCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred ----CcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 678999999999999999999887665 47999999999999998 58899999999999998765 44444
Q ss_pred -----------ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-----CCeEEEEEeeCCcEEEEE
Q 006808 156 -----------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 156 -----------~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~~~ 217 (630)
..|...|.+++|+|++.+|++++ |.|++||+.+++....+.++. ..+........+..++++
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV 310 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred cccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEE
Confidence 56788999999999999999987 899999999987665543321 112222222334455666
Q ss_pred eeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
+ .++.|++||+.+++. +..+..+...+..+.|+ |++.+|++++.||.|++|++.+++.+.....
T Consensus 311 ~-~~~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 311 P-YGSTIAVYTVYSGEQ-----ITMLKGHYKTVDCCVFQ-----SNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp E-ETTEEEEEETTTCCE-----EEEECCCSSCEEEEEEE-----TTTTEEEEEETTSCEEEEEECC---------
T ss_pred e-cCCEEEEEECcCCcc-----eeeeccCCCeEEEEEEc-----CCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 6 599999999998763 33444444556667776 9999999999999999999999887765443
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-25 Score=228.15 Aligned_cols=243 Identities=9% Similarity=0.033 Sum_probs=178.6
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++|+.+ .|+|+ +++|+.|++|++|+......+..+.. ..... ....+| ...+.++.|.+...
T Consensus 77 ~~v~~~--~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~--~~~~~-----~~~~~~-~~~v~~~~~~~~~~----- 138 (343)
T 3lrv_A 77 PNPRTG--GEHPA---IISRGPCNRLLLLYPGNQITILDSKT--NKVLR-----EIEVDS-ANEIIYMYGHNEVN----- 138 (343)
T ss_dssp ECCCTT--CCCCS---EEEECSTTEEEEEETTTEEEEEETTT--CCEEE-----EEECCC-SSCEEEEECCC--------
T ss_pred CCceee--eeCCc---eEEecCCCeEEEEEccCceEEeecCC--cceeE-----EeecCC-CCCEEEEEcCCCCC-----
Confidence 456444 88888 99999999999998764222211110 00000 000022 23577777776210
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee-EEeec-CCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRA-STKG 161 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~-~~~~~-~~~~ 161 (630)
+.++++|+.||.|++||+.+++........|...|.+++|+|+|.+|++|+.||.|++||+++++.+ ..+.. |..+
T Consensus 139 --~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 139 --TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred --CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence 7789999999999999999998865554556778999999999999999999999999999999988 78888 9999
Q ss_pred eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeec---CCCCeE--EEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG---HPGAVR--FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~---h~~~v~--~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|.+++|+|++.+|++++ +.|++||+++++.+..+.. |...+. +++|+|+|++|++++..|+.|++|++......
T Consensus 217 v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred EEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence 99999999999999998 8999999999877655443 444444 69999999999998744999999999765432
Q ss_pred cceeeeeecCCceeeeeEEecCCccCC---CCCEEEEEecCCcEEEEE
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDD---AGLYVLAISETGVCYIWY 280 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~dg~i~iwd 280 (630)
. .. .......|. + +...+++++.||.+.++-
T Consensus 297 ---~--~~----~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 297 ---W--TK----DEESALCLQ-----SDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ---E--EE----EEEEECCC---------CCCCEEEEEEETTEEEEEE
T ss_pred ---e--Ee----cCceeEecC-----ccccccceeEEEecCCceEEEE
Confidence 1 11 223344444 5 778999999999998875
No 117
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=6.4e-26 Score=229.21 Aligned_cols=250 Identities=10% Similarity=0.015 Sum_probs=192.8
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMV 141 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v 141 (630)
..+++++|.+. +.+|++++.+|.|++|++.++. ..... .+|...|.+++|+|+++ +|++++.||.|
T Consensus 12 ~~v~~~~~s~~---------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 12 DYISDIKIIPS---------KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp SCEEEEEEEGG---------GTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CcEEEEEEcCC---------CCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 35778888774 6789999999999999998877 22233 37999999999999999 99999999999
Q ss_pred EEEeC-CCCceeEEeec--CCCCeEEEEEccCCCEEEEeC--CeEEEEECCC---------CceeeEeecCCCCeEEEEE
Q 006808 142 CEIDP-LTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTF 207 (630)
Q Consensus 142 ~iwd~-~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~ 207 (630)
++||+ .+++. ..+.. |...|.+++|+| +.++++++ +.|++||+++ ++++..+. |...|.+++|
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 99999 77755 67788 999999999999 88999887 8999999988 77777776 8899999999
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCC-CccccceeeeeecCCceeeeeEEecCCccCC-CCCEEEEEecCCcEEEEEcCCc-
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI- 284 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~- 284 (630)
+|++ +++++ .|+.|++||+.. .... ...... .....+.++.++ | ++.++++++.||.|++|++...
T Consensus 159 ~~~~--l~~~~-~d~~i~i~d~~~~~~~~--~~~~~~-~~~~~i~~i~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 159 NSSR--LIVGM-NNSQVQWFRLPLCEDDN--GTIEES-GLKYQIRDVALL-----PKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CSSE--EEEEE-STTEEEEEESSCCTTCC--CEEEEC-SCSSCEEEEEEC-----SGGGCEEEEEETTSEEEEEECCTTC
T ss_pred cCCc--EEEEe-CCCeEEEEECCcccccc--ceeeec-CCCCceeEEEEC-----CCCCCEEEEEecCCcEEEEEEcCCC
Confidence 9987 77776 699999999988 5432 112222 333345666676 8 9999999999999999998765
Q ss_pred -ccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcce
Q 006808 285 -EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL 363 (630)
Q Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (630)
...... . ..... ... .. .-..|...|.+++|+|+|.+
T Consensus 228 ~~~~~~~--~-~~~~~------~~~-----~~----------------------------~~~~~~~~i~~~~~s~~~~~ 265 (342)
T 1yfq_A 228 DDYNSSK--R-FAFRC------HRL-----NL----------------------------KDTNLAYPVNSIEFSPRHKF 265 (342)
T ss_dssp CSTTCTT--C-EEEEC------CCC-----CT----------------------------TCCSSCCCEEEEEECTTTCC
T ss_pred ccccccc--c-eeeec------ccc-----cc----------------------------cccccceeEEEEEEcCCCCE
Confidence 110000 0 00000 000 00 00146678999999999999
Q ss_pred eeccccceeccccceeccc
Q 006808 364 LPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 364 l~~s~s~d~~~~~w~~~~~ 382 (630)
| ++++.|+.+++|++.+.
T Consensus 266 l-~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 266 L-YTAGSDGIISCWNLQTR 283 (342)
T ss_dssp E-EEEETTSCEEEEETTTT
T ss_pred E-EEecCCceEEEEcCccH
Confidence 9 99999999999998654
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-26 Score=239.97 Aligned_cols=249 Identities=14% Similarity=0.173 Sum_probs=188.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
...| .+++|||+|++||+++.||.|+|||..+ ++..+. |...+. ...+.+++|+|.
T Consensus 85 ~~~V--~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~-------------~~sv~svafSPD------ 140 (588)
T 2j04_A 85 VCYP--RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS-------------SRTYHCFEWNPI------ 140 (588)
T ss_dssp SCCE--EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST-------------TTCEEEEEECSS------
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc-------------cccEEEEEEcCC------
Confidence 3567 6779999999999999999999999644 555554 332211 224667777665
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee-------eEEc---cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL-------KWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL- 151 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~-------~~~~---~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~- 151 (630)
+++|++|+.||+|++||+.++.. +..+ ..+|...|.+++|+|+| +++++.|++|++||+..+..
T Consensus 141 ---G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 141 ---ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp ---SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred ---CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence 88899999999999999998853 3343 25788999999999999 88889999999999988774
Q ss_pred --eEEee-cCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEE--eeCCcEEEEEeeCCCeEE
Q 006808 152 --LGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTF--SDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 152 --~~~~~-~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~--sp~~~~l~~~~~~d~~i~ 225 (630)
.+++. +|...|.+++|+ |..||+++ ++|++||+.+++......+|...|..++| +|++..+++++ .+|+ +
T Consensus 216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~-k 291 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSY-K 291 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEE-E
T ss_pred cceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCC-E
Confidence 35664 677899999999 58888888 99999999988764444489999999999 99998888877 6999 9
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
+|.... ..++ |++..+++. |+++++|+.... .+..... ...+.+ ..++|
T Consensus 292 lw~~d~---------------------~~~s-----pd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~-va~SP 340 (588)
T 2j04_A 292 VLLEDE---------------------LHVT-----ADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHG-ISLSP 340 (588)
T ss_dssp EEESSS---------------------EEEE-----CCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEE-EEECT
T ss_pred EEeecc---------------------EEEC-----CCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEE-EEECC
Confidence 998761 2244 888777664 899999987433 3443333 221111 22788
Q ss_pred cccchhhhhhhccc
Q 006808 306 SQKSATAAIFAAKL 319 (630)
Q Consensus 306 ~~~~~~~~i~~~~~ 319 (630)
+++ .+++++.
T Consensus 341 dG~----~lA~~~~ 350 (588)
T 2j04_A 341 DGY----SIAIVYD 350 (588)
T ss_dssp TSS----EEEEEEE
T ss_pred CCC----EEEEEEe
Confidence 887 5665554
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.2e-25 Score=232.45 Aligned_cols=242 Identities=11% Similarity=0.054 Sum_probs=188.0
Q ss_pred ccceeEeEECCCCCEE-EEeeCCCcEEEEECC--CCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 5 NIRDILTSFSPALDYF-AICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~l-as~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+| .+++|+|+|++| |+|+.||.|+|||+. ++..+..+..+. ....+++++|.+.
T Consensus 104 ~v--~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------~~~~v~~~~~sp~----- 160 (450)
T 2vdu_B 104 YI--RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC----------------FSKRPNAISIAED----- 160 (450)
T ss_dssp CE--EEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE----------------CSSCEEEEEECTT-----
T ss_pred ce--EEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc----------------CCCCceEEEEcCC-----
Confidence 57 566999999996 899999999999999 888887765211 1234667777664
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeE---EccCCCCCCEEEEEEecC---CCEEEEEeCCCcEEEEeCCCCceeEE-
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGK- 154 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~---~~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~v~iwd~~~~~~~~~- 154 (630)
+.+|++|+.+|.|++|++.++.... ....+|...|++++|+|+ +++|++++.|+.|++||+.+++++..
T Consensus 161 ----~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 ----DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp ----SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred ----CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence 7789999999999999998876532 233579999999999999 99999999999999999999998887
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------------------------CCCeEEEEE
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------------------PGAVRFMTF 207 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------------------~~~v~~l~~ 207 (630)
+.+|...|.+++|+ ++.+|++++ +.|++||+.+++++..+..+ ...|.+++|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 55899999999999 999999998 89999999999988877632 356899999
Q ss_pred eeCCcEEEEEeeCCCeEEEEEc--CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec------CCcEEEE
Q 006808 208 SDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIW 279 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------dg~i~iw 279 (630)
+|+++++++++..++.|++|++ ..+... .....+..+. .+..+.|. |++.++++++. +..|.+|
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l--~~~~~~~~~~-~v~~~~~~-----~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDL--ALKQIITFPY-NVISLSAH-----NDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCE--EEEEEEECSS-CEEEEEEE-----TTEEEEEECCTTCCSSCCCSEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCce--eeccEeccCC-ceEEEEec-----CCcEEEEEecccCCCCCCcceEEE
Confidence 9999999998756999999999 443211 1233333333 34555565 75443433343 4558888
Q ss_pred EcC
Q 006808 280 YGQ 282 (630)
Q Consensus 280 d~~ 282 (630)
.+.
T Consensus 388 ~~~ 390 (450)
T 2vdu_B 388 EYN 390 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.4e-24 Score=211.13 Aligned_cols=248 Identities=14% Similarity=0.090 Sum_probs=176.8
Q ss_pred EEEEeeCCCcEEEEECCCC---cEEEEeccccccccccccccccc------cccc-ccceeeEEecccccccccc-----
Q 006808 19 YFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLE------REHL-SVDYTCMKWLSVDRKKKRK----- 83 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~------~~~~-~~~~~~~~w~~~~~~~~~~----- 83 (630)
-+++++ ...|++|+..++ +.++++..+..++..+.+.|+.. -|++ ...+..+++.|.+...+..
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 345555 469999999998 88999999999999998888411 1222 1245555665552211000
Q ss_pred -------cCCcEEEEEe---CCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEec---CCCEEEEEeCCCcEEEEeCCCC
Q 006808 84 -------LGSSLLVLGT---GGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 84 -------~~~~~l~~~~---~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~---~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
.....++..+ .++.|++|++.. ++.+... .+|...++.++|++ ++..|++++.|++|++||+.+|
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 0122233333 378899999844 6665444 36888888999988 7789999999999999999999
Q ss_pred ceeEEeecCCC---CeEEEEEccCCCEEE------------EeC--CeEEEEECCCCceeeEe-----ecCCCCeEEEEE
Q 006808 150 SLLGKFRASTK---GISCMAVSSDGKMLA------------TAA--GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTF 207 (630)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~~p~~~~l~------------~~~--g~i~lwd~~~~~~~~~~-----~~h~~~v~~l~~ 207 (630)
++++++.+|.. .+.+++|+|+|.+++ +|+ ++|++||..+++.+..+ .+|...+.+..+
T Consensus 214 k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 214 QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence 99999987543 677889999999874 344 69999999999887665 367666544444
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
+ +.++++++ .|++|+|||+.+++. +..+. |....+.++.|+ |+|++|++|+.|++|+|||+
T Consensus 294 s--g~~lASgS-~DgTIkIWDl~tGk~-----l~tL~gH~~~vvs~vafS-----PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 K--DHCAAAIL-TSGTIAIWDLLLGQC-----TALLPPVSDQHWSFVKWS-----GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--TTEEEEEE-TTSCEEEEETTTCSE-----EEEECCC--CCCCEEEEC-----SSSSEEEEECTTSCEEEEEE
T ss_pred C--CCEEEEEc-CCCcEEEEECCCCcE-----EEEecCCCCCeEEEEEEC-----CCCCEEEEEECCCcEEEecC
Confidence 4 77777776 799999999999873 33443 444555567787 99999999999999999985
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.2e-25 Score=231.98 Aligned_cols=244 Identities=10% Similarity=0.013 Sum_probs=159.7
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.+++++.+||+|+.|++|+|||+.++......... ...||.. .+.+++|.|..... ....+.+|++
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~------------~~~gH~~-~v~~v~~~p~~~~~-~~~d~~~las 161 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLG------------GKSGHHN-FVNDIDIADVYSAD-NRLAEQVIAS 161 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEEC------------TTTSCSS-CEEEEEEEEEECTT-CSEEEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeec------------ccCCCCC-ceEEEEEccccccc-cCCCCCEEEE
Confidence 45567789999999999999999988654321100 0114432 45566665521100 0001678999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEe---------------
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF--------------- 155 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~--------------- 155 (630)
|+.|++|+|||+.++..+..+. +|..+|.+++|+|++. +|++++.|++|++||+.+++.....
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp EETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred EECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 9999999999999888776665 6889999999999875 7999999999999999887643322
Q ss_pred ----------ecCCCCeEEEEEc-cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEee-------------
Q 006808 156 ----------RASTKGISCMAVS-SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD------------- 209 (630)
Q Consensus 156 ----------~~~~~~v~~l~~~-p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp------------- 209 (630)
.+|...+.++.|. |++..+++++ +++++||+..++....+..|...+..+.+.|
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG 320 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC
T ss_pred cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee
Confidence 2466678899986 7999999998 8999999988877666665554444433332
Q ss_pred ------CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 210 ------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 210 ------~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.+..++++++.|+.|++||+.++... .....+.. .+..++|+ |+|++||+++.+| +.+|.+
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~----~~~~~~~~-~V~svafs-----pdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSN----SIPIQLGM-PIVDFCWH-----QDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCC----EEEEECSS-CEEEEEEC-----TTSSEEEEEESSE-EEEEEE
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEE----EEecCCCC-cEEEEEEc-----CCCCEEEEEeCCC-eEEEEE
Confidence 34455555557999999999987644 22233444 45667777 9999999998766 556654
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=8.3e-25 Score=223.06 Aligned_cols=260 Identities=11% Similarity=0.048 Sum_probs=185.3
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
.+++++|.+.... +.+|++|+.+|.|++||+.+ +..+.....+|...|++++|+|++++|++++.||.|++||
T Consensus 41 ~v~~~~~~~~~~~------g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 41 SIGCLSFSPPTLP------GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp CEEEEEECCTTSS------SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEEEcCCCCC------ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 4566777665321 47899999999999999998 5555455568999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEE--ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 146 PLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~--~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
+.+++.+. +..|...|.+++| +|++.+|++++ |.|++||+++++.+..+..|. .+.++.+.+ ..+++++ .+
T Consensus 115 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~ 189 (368)
T 3mmy_A 115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVAT-AE 189 (368)
T ss_dssp TTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEE-GG
T ss_pred cCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEe-CC
Confidence 99998776 4558999999999 89999999987 899999999999988888664 566666664 4667766 59
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccC
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (630)
+.+++|++...............+....+...... . .....+++++.||.|++|++.......... ....
T Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~----~~~~-- 259 (368)
T 3mmy_A 190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK--Q--NKPTGFALGSIEGRVAIHYINPPNPAKDNF----TFKC-- 259 (368)
T ss_dssp GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECT--T--SCEEEEEEEETTSEEEEEESSCSCHHHHSE----EEEC--
T ss_pred CcEEEEEeccccchhhhccccccCCCceEEEcccC--C--CCCCeEEEecCCCcEEEEecCCCCccccce----eeee--
Confidence 99999999876533111111111222222222111 0 012339999999999999997663211000 0000
Q ss_pred CCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
. .. .........|...|.+++|+|+|.+| ++++.|+.+++|++.+
T Consensus 260 ----~------------~~------------------~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 260 ----H------------RS------------------NGTNTSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDA 304 (368)
T ss_dssp ----S------------EE------------------C----CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTT
T ss_pred ----e------------ec------------------ccccccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCC
Confidence 0 00 00000112566689999999999999 9999999999999875
Q ss_pred c
Q 006808 382 R 382 (630)
Q Consensus 382 ~ 382 (630)
.
T Consensus 305 ~ 305 (368)
T 3mmy_A 305 R 305 (368)
T ss_dssp T
T ss_pred C
Confidence 4
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=5.2e-25 Score=214.11 Aligned_cols=210 Identities=11% Similarity=0.065 Sum_probs=159.6
Q ss_pred cccceeEeEECCC----CCEEEEeeCCCcEEEEECCCCcEEEE-eccccccccccccccccccccc-------ccceeeE
Q 006808 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHL-------SVDYTCM 71 (630)
Q Consensus 4 ~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~ 71 (630)
..|+.+ +|+|| ++++++++. .++||++.+++.+.. ..+|...+....++++ |.. +..++++
T Consensus 112 ~~v~sl--a~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d---G~~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 112 REIRAL--FCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED---GGGKENQFLMPPEETIL 184 (356)
T ss_dssp EEEEEE--CC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTT---SCEEEEEEECCCSSCEE
T ss_pred cceEEE--EECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCC---CceeeeeccCCCceeeE
Confidence 467555 99999 999999884 478899888888777 5678888887777775 211 3355667
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCC--CCCEEEEEEecCCCEE------------EEEeC
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCI------------YSAGA 137 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h--~~~v~~~~~s~~g~~l------------~s~~~ 137 (630)
+|.+.+.. +.+|++|+.|++|+|||+.+++++.++..+| ...+.+++|+|+|.++ ++|+.
T Consensus 185 ~fs~~~g~------~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 185 TFAEVQGM------QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp EEEEEETS------TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred EeeccCCC------CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 77764433 7899999999999999999999987775333 3468888999999876 56788
Q ss_pred CCcEEEEeCCCCceeEEe-----ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeE-EEEEee
Q 006808 138 DGMVCEIDPLTGSLLGKF-----RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR-FMTFSD 209 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~-~l~~sp 209 (630)
|++|++||..+++.+..+ .+|...+.+..+ ++.++++++ ++|+|||+.+++++.++.+|...+. .++|+|
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred CcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 999999999999988765 245555444444 377888887 8999999999999999999987655 689999
Q ss_pred CCcEEEEEeeCCCeEEEEEc
Q 006808 210 NGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 210 ~~~~l~~~~~~d~~i~vwd~ 229 (630)
+|++|++++ .|++|+|||+
T Consensus 337 DG~~LaSGS-~D~TIklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQ-KDGNIFVYHY 355 (356)
T ss_dssp SSSEEEEEC-TTSCEEEEEE
T ss_pred CCCEEEEEE-CCCcEEEecC
Confidence 999999987 7999999996
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=3.2e-24 Score=229.62 Aligned_cols=324 Identities=7% Similarity=-0.019 Sum_probs=226.8
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+|+|++.++++++.|++|.+||..+++++.++..... +..+.|+|+ ++++++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd---------------------------g~~l~v 195 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS---------------------------GRYLLV 195 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT---------------------------SCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC---------------------------CCEEEE
Confidence 6899999999999999999999999999988863221 333333333 888999
Q ss_pred EeCCCeEEEEEc--cCCeeeEEccCCCCCCEEEEEEec----CCCEEEEEe-CCCcEEEEeCCCCceeEEeecC------
Q 006808 92 GTGGGDVLALAV--SAGQLKWRLSDCHPGGVSAISFAT----HGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------ 158 (630)
Q Consensus 92 ~~~~g~v~iwd~--~~~~~~~~~~~~h~~~v~~~~~s~----~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~------ 158 (630)
++.++.|.+||+ .+++.+.++. +...+..++|+| +|+++++++ .+++|.+||..+++++..+..+
T Consensus 196 ~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 196 IGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred ECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 999999999999 8888876664 456789999999 999999888 4899999999999999888752
Q ss_pred -----CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 159 -----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 159 -----~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
...+.++.++|++..++++. +.|.+||+.+.+.+. .+. +...+..+.|+|+|++|++++..+++|.+||
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 22788999999877665553 899999998876544 343 5667889999999999888876789999999
Q ss_pred cCCCccccceeeeee---cCCceeeeeEEecCCccCCC-CCEEEEEe-cCCcEEEEEcCC-------cccccccCceeEE
Q 006808 229 TDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDA-GLYVLAIS-ETGVCYIWYGQN-------IEELRNTKATKIL 296 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~ 296 (630)
+.+++.. ..... .|+..... ++. |+ +..++++. .|++|.+||..+ ++.++..+.....
T Consensus 353 ~~tg~l~---~~i~~g~~ph~g~g~~--~~~-----p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 353 SKDRRLS---ALVDVGKTPHPGRGAN--FVH-----PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp TTTTEEE---EEEECSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred CCCCeEE---EeeccCCCCCCCCCcc--cCC-----CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 9998744 22222 24332222 233 66 55566665 579999999988 5555544332111
Q ss_pred eeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEE--------eccCCCcEEEeecCCcceeeccc
Q 006808 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI--------LVNSGEDINLNCSQDGVLLPMSQ 368 (630)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~--------~~h~~~v~~~~~s~dg~~l~~s~ 368 (630)
.....++|+++ .+++++.-+--.-.+..+.+.+-......++.+ ..|...+..+.|+|||+.|.++.
T Consensus 423 -~~~v~~~pdg~----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 423 -SLFIKTHPKSS----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp -CCCEECCTTCC----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred -ceEEEcCCCCC----cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 01122678877 777765211000001222332222112222333 34567899999999999985542
Q ss_pred ----cceeccccceecc
Q 006808 369 ----SLLKSKRGRYVQN 381 (630)
Q Consensus 369 ----s~d~~~~~w~~~~ 381 (630)
+.|+.|.+|+.+.
T Consensus 498 ~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 498 WNGKNDSSALVVVDDKT 514 (543)
T ss_dssp ECCTTSCCEEEEEETTT
T ss_pred ecCCCCCCeEEEEECCC
Confidence 3579999999764
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=1.5e-23 Score=216.27 Aligned_cols=239 Identities=10% Similarity=0.060 Sum_probs=188.7
Q ss_pred eEeEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.+++|+|+|+++ ++++.|++|++||+.+++.+..+..+. .+.+++|.+. +.
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------------~v~~~~~spd---------g~ 86 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------------------SPQGVAVSPD---------GK 86 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTT---------SS
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------------------CccceEECCC---------CC
Confidence 566999999977 667789999999999999888775322 4556677664 55
Q ss_pred EEE-EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 88 LLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 88 ~l~-~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
.|+ ++..++.|++||+.+++.+..+. +...+.+++|+|+|+.+ ++++.++.|++||+.+++.+..+..+ ..+.++
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI 163 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence 554 45567999999999998876653 44578999999999987 67888999999999999998888865 457999
Q ss_pred EEccCCCEEE-EeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee--CCCeEEEEEcCCCccccceee
Q 006808 166 AVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 166 ~~~p~~~~l~-~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~ 240 (630)
+|+|++++++ +++ +.|++||+.+++.+..+. +...+.+++|+|+++++++++. .++.|++||+.+++..
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~----- 237 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----- 237 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----
Confidence 9999998874 444 799999999998877776 5567899999999999998875 5899999999887633
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEE-EEEecCCcEEEEEcCCccccccc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
..+..... +..+.++ |++++| ++++.|+.|++||+.+++.+...
T Consensus 238 ~~~~~~~~-~~~~~~s-----~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 238 ARIPVGPD-PAGIAVT-----PDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EEEECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEecCCC-ccEEEEc-----cCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 22222222 3455665 899887 56678999999999988766544
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=4.1e-24 Score=217.26 Aligned_cols=234 Identities=13% Similarity=0.093 Sum_probs=174.9
Q ss_pred EeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|.+++++++ +|+.|++|+|||+.+++.+..+.. .. .+.++.|.+ ..
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-~~------------------~v~~v~~~~-----------~~ 112 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-DA------------------PVKDLFLSR-----------EF 112 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC-SS------------------CEEEEEECS-----------SE
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC-CC------------------ceEEEEEcC-----------CE
Confidence 348888888875 677789999999999998887752 11 344555543 22
Q ss_pred EEEEeCCCeEEEEEccCC-eeeEEccCCCCCCEEEEEEecCCCEEEE--EeCCCcEEEEeCCCCc---------------
Q 006808 89 LVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYS--AGADGMVCEIDPLTGS--------------- 150 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s--~~~dg~v~iwd~~~~~--------------- 150 (630)
++++ .++.|++||+.++ +.+..+.. +...+++++ .+++. |+.||.|++||+.+++
T Consensus 113 ~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 113 IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAIL 185 (355)
T ss_dssp EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------
T ss_pred EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccC
Confidence 3443 5789999999988 55433321 455566777 56665 5789999999999865
Q ss_pred -eeEEeecCCCCeEEEEEccCCCEEEEeC--Ce-EEEEECCCCceeeEee-c-CCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 151 -LLGKFRASTKGISCMAVSSDGKMLATAA--GQ-LKTFNCSDHKKMQKFS-G-HPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 151 -~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~-i~lwd~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
++..+.+|...|.+++|+|+|++|++++ ++ |++||+.+++++.++. + |...|.+++|+|++++|++++ .|++|
T Consensus 186 p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v 264 (355)
T 3vu4_A 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS-DKWTL 264 (355)
T ss_dssp -CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE-TTCEE
T ss_pred cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE-CCCEE
Confidence 2678999999999999999999999998 87 9999999999999998 6 999999999999999999988 69999
Q ss_pred EEEEcCCCcccccee-----------------eeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 225 ALWRTDGVKKQSASC-----------------VLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
++||+.......... .+.+.. .......++|+ +++.+|++++.||.+++|++..+..
T Consensus 265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI-----SESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-----SSSEEEEEETTTTEEEEEEEEEETT
T ss_pred EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-----CCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 999997754221000 000110 01111345565 8999999999999999999866543
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3.1e-23 Score=215.23 Aligned_cols=305 Identities=8% Similarity=-0.043 Sum_probs=212.1
Q ss_pred EECCCCC-EEEEee----CCC----cEEEEEC--CCCcEE--EEecccccccccccccccc-----cccccccceeeEEe
Q 006808 12 SFSPALD-YFAICS----GDA----RIKIWDT--LKGQVQ--TEFADIASTETTSLYGNRL-----EREHLSVDYTCMKW 73 (630)
Q Consensus 12 ~fs~dg~-~las~s----~dg----~i~vwd~--~~~~~~--~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~w 73 (630)
+|++.|. ++++|+ .|| +|++||+ .+++++ ..+.++...+..+.+.+.- ..++..
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~-------- 140 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG-------- 140 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC--------
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC--------
Confidence 7888874 666876 467 8999999 999877 4477666555444333210 001000
Q ss_pred cccccccccccCCcEEEEEeCC------CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC---cEEEE
Q 006808 74 LSVDRKKKRKLGSSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEI 144 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~------g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~v~iw 144 (630)
++ +..++.++.+ +.|++||+..+.. ..+ .+|...|.+++|+|+|++|++++.++ .|++|
T Consensus 141 -~~---------~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~ 208 (415)
T 2hqs_A 141 -AF---------RTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQ 208 (415)
T ss_dssp -CT---------TCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred -cC---------CCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEE
Confidence 00 3345555443 6899999985543 233 36888999999999999999998875 99999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccCCCEEE-EeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLA-TAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~-~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
|+.++++. .+..+...+.+++|+|+|+.|+ +++ ..|++||+.+++. ..+..|...+.+++|+|+|++|++++.
T Consensus 209 d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 209 TLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp ETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred ECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC
Confidence 99998875 4666778999999999999888 444 3699999988875 567778889999999999999998874
Q ss_pred CCC--eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC---CcEEEEEcCCcccccccCc-e
Q 006808 220 GER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKA-T 293 (630)
Q Consensus 220 ~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~-~ 293 (630)
.++ .|++||+.+++.. .+......+....|+ |+|++|++++.+ +.|++||+.+++...-... .
T Consensus 287 ~~g~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~s-----pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 355 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGAPQ------RITWEGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFL 355 (415)
T ss_dssp TTSSCEEEEEETTSSCCE------ECCCSSSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSS
T ss_pred CCCCcEEEEEECCCCCEE------EEecCCCcccCeEEC-----CCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCC
Confidence 345 6888898876532 122222344456666 999999988874 5899999988765321111 1
Q ss_pred eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcce
Q 006808 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL 363 (630)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (630)
...+ .++|+++ .|++++.++. ...++... ........+..|.+.|.+++|+|--.+
T Consensus 356 ~~~~----~~spdg~----~l~~~s~~~~----~~~l~~~d--~~g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 356 DETP----SLAPNGT----MVIYSSSQGM----GSVLNLVS--TDGRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp CEEE----EECTTSS----EEEEEEEETT----EEEEEEEE--TTSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred cCCe----EEcCCCC----EEEEEEcCCC----ccEEEEEE--CCCCcEEEeeCCCCCCcCCcccccccc
Confidence 1222 2688887 7777776541 11233332 124456677889999999999996543
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=9.2e-23 Score=213.33 Aligned_cols=236 Identities=8% Similarity=0.051 Sum_probs=186.0
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++| .+++|+|+|.++++++.|+.|++||+.+++.+..+..+... +.+++|.+.
T Consensus 170 ~~v--~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~------------------~~~~~~~~~------- 222 (433)
T 3bws_A 170 GFV--ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW------------------SKILLYDPI------- 222 (433)
T ss_dssp CEE--EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS------------------EEEEEEETT-------
T ss_pred Cce--eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC------------------eeEEEEcCC-------
Confidence 356 45599999999999999999999999999988877644433 445566554
Q ss_pred cCCcEE-EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe--------CCCcEEEEeCCCCceeEE
Q 006808 84 LGSSLL-VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--------ADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 84 ~~~~~l-~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--------~dg~v~iwd~~~~~~~~~ 154 (630)
+..+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+|+++++++ .|+.|++||+.+++.+..
T Consensus 223 --~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 223 --RDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp --TTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred --CCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 4555 455578999999999998876653 345699999999999999887 488999999999988776
Q ss_pred eecCCCCeEEEEEccCCCEEEEe-C--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC-----------
Q 006808 155 FRASTKGISCMAVSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG----------- 220 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~-~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~----------- 220 (630)
+. +...+.+++|+|+++.++++ + +.|++||+.+++.+..+. +...+.+++|+|+++++++++..
T Consensus 299 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 299 IG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp EE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred cc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 64 45578999999999766444 4 899999999998887776 67789999999999998887743
Q ss_pred ---CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCC
Q 006808 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (630)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~ 283 (630)
||.|++||+.+++.. ..+.... .+..+.|+ |+|.+|++++. |+.|++|++..
T Consensus 377 g~~dg~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 377 GLVLGKVYVIDTTTDTVK-----EFWEAGN-QPTGLDVS-----PDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CSSCCEEEEEETTTTEEE-----EEEECSS-SEEEEEEC-----TTSCEEEEEETTTTEEEEEEETT
T ss_pred cccceEEEEEECCCCcEE-----EEecCCC-CCceEEEc-----CCCCEEEEEECCCCeEEEEEecC
Confidence 469999999887643 2222322 34556666 99999988875 99999999753
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=2.2e-22 Score=225.60 Aligned_cols=342 Identities=9% Similarity=0.029 Sum_probs=216.9
Q ss_pred cccceeEeEECCCCCEEEEeeC-CC-----cEEEEECCCCcEEEEecccccccccccccccc--c--cccc--ccceeeE
Q 006808 4 SNIRDILTSFSPALDYFAICSG-DA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRL--E--REHL--SVDYTCM 71 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~-dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~--~--~~~~--~~~~~~~ 71 (630)
.+| .+++|||||++||+++. |+ .|++||+.+++....+..+........++... . ..+. ...+.++
T Consensus 37 ~~~--~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 37 PTL--MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCC--EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCC--CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456 45599999999999998 88 89999999998776665432210000000000 0 0000 0124566
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCC---eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~---~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
.|.|. ++.|++++. +.|++||+.++ ... .+ ..|...+.+++|+|||++|+.++ ++.|++||+.+
T Consensus 115 ~~SpD---------g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 115 QWSPD---------AQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EECTT---------SSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EECCC---------CCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 66664 677888776 99999999988 443 33 35778899999999999998887 46899999998
Q ss_pred CceeEEeecCCCC----------------eEEEEEccCCCEEEEeC--C-------------------------------
Q 006808 149 GSLLGKFRASTKG----------------ISCMAVSSDGKMLATAA--G------------------------------- 179 (630)
Q Consensus 149 ~~~~~~~~~~~~~----------------v~~l~~~p~~~~l~~~~--g------------------------------- 179 (630)
++.......+... +.+++|+|||++|++++ +
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 8776554443332 47899999999998875 3
Q ss_pred --eEEEEECCC-CceeeEee--cCCCCeEEEEEeeCCcEEEEEee----CCCeEEEEEcCCCccccceeeeeecCCce--
Q 006808 180 --QLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAV-- 248 (630)
Q Consensus 180 --~i~lwd~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~l~~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-- 248 (630)
.|++||+.+ ++...... .|...+..++| |||++|++++. .+..|++||+.+++.. .+........
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~ 337 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---VLAHETSPTWVP 337 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---EEEEEECSSCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---EEEEcCCCCcCC
Confidence 789999988 77554432 47788999999 99999998763 2467999999987643 2222211111
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC-CcccccccCceeEEeeccCCCcccccchhhhhhhccc-cccccCC
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL-QDIVKPA 326 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~ 326 (630)
.+....|+ |||+++++++.+|.++||.+. .+. ..........+.....++++++ .|++.+. ++ ..
T Consensus 338 ~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~----~l~~~~~~~~---~~ 404 (741)
T 2ecf_A 338 LHNSLRFL-----DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG----LAYFRAGIES---AR 404 (741)
T ss_dssp CCSCCEEC-----TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT----EEEEEECSSC---TT
T ss_pred cCCceEEC-----CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC----EEEEEEeCCC---Cc
Confidence 22345565 999988999999988888764 232 3322222111111112577776 5544333 32 00
Q ss_pred ceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccce---eccccceec
Q 006808 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQ 380 (630)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~~ 380 (630)
..+++..... ......+.. ...+.+++|||||++|+++.+.. ..+.+++..
T Consensus 405 ~~~l~~~~~~--g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 405 ESQIYAVPLQ--GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp CBEEEEEETT--CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred eEEEEEEEcC--CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 1233443311 112233333 55678999999999885554432 445666553
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.5e-21 Score=196.22 Aligned_cols=287 Identities=9% Similarity=0.045 Sum_probs=193.2
Q ss_pred EECCCCCE-EEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~fs~dg~~-las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
.|++++.+ +++++.++.|++||..+++....+..+...+ +++|.+. ++.++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------~~~~s~d---------g~~l~ 55 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-------------------DTAITSD---------CSNVV 55 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-------------------EEEECSS---------SCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-------------------eEEEcCC---------CCEEE
Confidence 56776665 6677789999999999999887765332222 4444443 55555
Q ss_pred EEeC-CCeEEEEEccCCee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCC---cEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 91 LGTG-GGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 91 ~~~~-~g~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....++
T Consensus 56 ~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 56 VTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI 133 (331)
T ss_dssp EEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred EEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence 5555 78999999999887 4343 34555555599999999998555553 8999999999988887754 456899
Q ss_pred EEccCCCEEEEeC---Ce-EEEEECCCCcee----eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 166 AVSSDGKMLATAA---GQ-LKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 166 ~~~p~~~~l~~~~---g~-i~lwd~~~~~~~----~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+|+|+|+++++++ +. |.+|++.....+ .....+...+..++|+|+|+++++++..++.|.+||+.+++...
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~- 212 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT- 212 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-
Confidence 9999998766654 57 999998764332 12223345689999999999887777678999999998876410
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
....+... .....+.|+ |+|+++++++ .++.|.+||..+++..... ..... +....
T Consensus 213 -~~~~~~~~-~~~~~~~~s-----pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~~--~~~~~--------- 269 (331)
T 3u4y_A 213 -LLNAVGTN-NLPGTIVVS-----RDGSTVYVLTESTVDVFNFNQLSGTLSFVK-----SFGHG--LLIDP--------- 269 (331)
T ss_dssp -EEEEEECS-SCCCCEEEC-----TTSSEEEEECSSEEEEEEEETTTTEEEEEE-----EEECC--CCCCC---------
T ss_pred -eeeeccCC-CCCceEEEC-----CCCCEEEEEEcCCCEEEEEECCCCceeeec-----ccccc--cccCC---------
Confidence 12222222 223445565 9999877665 4778999999877541100 00000 00000
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.+......++|+|||++|.+++..++.+++|++...
T Consensus 270 ------------------------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 270 ------------------------------RPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp ------------------------------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred ------------------------------CCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 000112568899999988567777789999998653
No 131
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2.1e-22 Score=225.13 Aligned_cols=321 Identities=9% Similarity=0.043 Sum_probs=207.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|+|||+++++ +.||+|++||+.+++....+..+... ...+..++|.|. ++.
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~---------------~~~v~~~~~SpD---------g~~ 74 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEISPD---------REY 74 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEECTT---------SSE
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc---------------ccccceEEECCC---------CCE
Confidence 45699999998776 68999999999999887766544321 012344555543 777
Q ss_pred EEEEeCC---------CeEEEEEccCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 89 LVLGTGG---------GDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 89 l~~~~~~---------g~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
|++++.+ +.|.+||+.+++.. .+. .+|...+..++|+|||+.|+.++. +.|++||+.+++..+....
T Consensus 75 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 75 ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 8888764 77899999998762 222 245556899999999999998876 7899999999887766554
Q ss_pred CCCCe------------------EEEEEccCCCEEEEeC--C----------------------------------eEEE
Q 006808 158 STKGI------------------SCMAVSSDGKMLATAA--G----------------------------------QLKT 183 (630)
Q Consensus 158 ~~~~v------------------~~l~~~p~~~~l~~~~--g----------------------------------~i~l 183 (630)
+...+ .+++|+|||++|++++ + .|++
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 44333 7899999999998875 2 7999
Q ss_pred EECCCCceeeEeecC------CCCeEEEEEeeCCcEEEEEeeC---CCeEEEEEcCCCccccceeeeeecCCceee---e
Q 006808 184 FNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFM---D 251 (630)
Q Consensus 184 wd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~ 251 (630)
||+.+++....+..+ ...+.+++|+|||+++++.+.. +..|++||+.+++.. .+....+...+. .
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---KKHEDESEAWLHRQNE 309 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---EEEEEECSSCCCCCCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce---EEEEeccCCEEeccCC
Confidence 999988765666544 5678999999999988776532 357999999887643 222222222211 2
Q ss_pred eEEecCCccCCCCCEEEEE--ecCC------cEEEEE-cCCccc--ccccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 252 CRCIDNGGVDDAGLYVLAI--SETG------VCYIWY-GQNIEE--LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 252 ~~~~~~~~~~~~~~~l~s~--s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
...|+ |||++|+.. ..+| .|++|| ...+.. ..........+.....++|+++ .|+..+.+
T Consensus 310 ~~~~s-----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~----~l~~~~~~ 380 (723)
T 1xfd_A 310 EPVFS-----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN----KIYFLSTE 380 (723)
T ss_dssp CCEEC-----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT----EEEEEESS
T ss_pred CceEc-----CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC----EEEEEEcC
Confidence 44565 999977754 4566 577777 344430 2222211111111112678877 66554443
Q ss_pred ccccCCceeEEEEEcCccCceeeEEec---cCCCcEEEeecCCcceeeccccce
Q 006808 321 DIVKPASVHTFVAYGLLLKPSFQKILV---NSGEDINLNCSQDGVLLPMSQSLL 371 (630)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~~s~s~d 371 (630)
+. ....+++...-.. ......+.. |...+..++|||||++|+++.+..
T Consensus 381 ~~--~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 381 DL--PRRRQLYSANTVG-NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp SC--TTCCEEEEECSST-TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CC--CcceEEEEEeCCC-CCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 10 0122344432110 001112222 566788999999999885555433
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=2.6e-20 Score=188.84 Aligned_cols=265 Identities=13% Similarity=0.087 Sum_probs=193.0
Q ss_pred EeEECCCCCEEEEeeC-------CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 10 LTSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 10 ~~~fs~dg~~las~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++|+|+|+++++++. ++.|.+||..+++.+..+.... . ...+.|.+.
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~------------------~~~~~~s~d------ 99 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-K------------------PFGATINNT------ 99 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-C------------------CCSEEEETT------
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-C------------------cceEEECCC------
Confidence 4599999998888774 5689999999999887775321 1 223444443
Q ss_pred ccCCc-EEEEEeCCCeEEEEEccCCeeeEEccCCCCC--------CEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCce
Q 006808 83 KLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPG--------GVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSL 151 (630)
Q Consensus 83 ~~~~~-~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~--------~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~ 151 (630)
++ +++++..++.|.+||+.+++.+..+..++.. .+.+++|+|+|+++++++ .++.|.+||+.+++.
T Consensus 100 ---g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 100 ---TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL 176 (353)
T ss_dssp ---TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred ---CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence 45 4445555789999999999887666533222 278999999999877776 478899999999999
Q ss_pred eEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec----CCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
+..+..+...+.+++|+|+|+++++++ +.|.+||+.+++.+..+.. +...+.+++|+|+++++++++..++.|.
T Consensus 177 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 177 KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence 888875666688999999999988887 8999999999988877753 4556888999999998888876669999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccCceeEEeeccCCCc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (630)
+||+.+++.. ........ ..+.++ |+|+++++++ .++.|.+||..+++.+.......... ...++
T Consensus 257 ~~d~~~~~~~---~~~~~~~~----~~~~~s-----~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~s 322 (353)
T 3vgz_A 257 VVDTRNGNIL---AKVAAPES----LAVLFN-----PARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPN--SLALS 322 (353)
T ss_dssp EEETTTCCEE---EEEECSSC----CCEEEE-----TTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEE--EEEEC
T ss_pred EEECCCCcEE---EEEEcCCC----ceEEEC-----CCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCC--eEEEc
Confidence 9999887643 22222222 235555 8998766665 68999999999887765543322111 11256
Q ss_pred ccccchhhhhhhcccc
Q 006808 305 KSQKSATAAIFAAKLQ 320 (630)
Q Consensus 305 ~~~~~~~~~i~~~~~d 320 (630)
++++ .++++...
T Consensus 323 ~dg~----~l~v~~~~ 334 (353)
T 3vgz_A 323 ADGK----TLYVSVKQ 334 (353)
T ss_dssp TTSC----EEEEEEEC
T ss_pred CCCC----EEEEEEcc
Confidence 6665 45555443
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=8.6e-21 Score=203.03 Aligned_cols=273 Identities=10% Similarity=0.062 Sum_probs=201.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~ 163 (630)
+.++++++.++.|.+||..+++++.++..+|. +.+++|+|+|+++++++.|++|.+||+ .+++++.++.. ...+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~ 225 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEAR 225 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcc
Confidence 66788888999999999999999877765554 899999999999999999999999999 88999888884 55679
Q ss_pred EEEEcc----CCCEEEEeC---CeEEEEECCCCceeeEeec----------CCC-CeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 164 CMAVSS----DGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HPG-AVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 164 ~l~~~p----~~~~l~~~~---g~i~lwd~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.++|+| +|+++++++ ++|.+||..+++++.++.. |.. .+.++.++|++..++++...++.|.
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 305 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence 999999 999999887 8999999999998888764 223 7889999999888877777899999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccCceeEEee--ccCC
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSS--SEDV 302 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~ 302 (630)
+||+.+.+.. .+..+.+ ........|+ |+|+++++++ .++.|.+||..+++.+........... ....
T Consensus 306 vvd~~~~~~l---~~~~i~~-~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 306 LVNYKDIDNL---TVTSIGA-APFLHDGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp EEECTTSSSC---EEEEEEC-CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred EEEecCCCcc---eeEEecc-CcCccCceEC-----CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 9999886533 1222332 2234445666 9999877665 588999999999987654332110000 0000
Q ss_pred Ccccccchhhhhhhcc-ccccccCCceeEEEEEcCc------cCceeeEEeccCCCcEEEeecCCcceeecccc------
Q 006808 303 NSKSQKSATAAIFAAK-LQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS------ 369 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s------ 369 (630)
+.|++. +.+++++ .++.+. +..-.. ....++++.+|...+..+.++|||++| .+++
T Consensus 377 ~~p~~g---~~~~s~~~~d~~V~-------v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l-~v~~~~~~~~ 445 (543)
T 1nir_A 377 VHPKYG---PVWSTSHLGDGSIS-------LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL-YVDTTFNPDA 445 (543)
T ss_dssp EETTTE---EEEEEEBSSSSEEE-------EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE-EECCTTCSSH
T ss_pred CCCCCc---cEEEeccCCCceEE-------EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE-EEecCCCCCc
Confidence 233322 1333433 233322 222111 156788999999999999999999999 6554
Q ss_pred -ceeccccceecc
Q 006808 370 -LLKSKRGRYVQN 381 (630)
Q Consensus 370 -~d~~~~~w~~~~ 381 (630)
.++++.+|++.+
T Consensus 446 ~~~~~v~v~d~~~ 458 (543)
T 1nir_A 446 RISQSVAVFDLKN 458 (543)
T ss_dssp HHHTCEEEEETTC
T ss_pred ccCceEEEEECCC
Confidence 378999999864
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=2.8e-20 Score=192.99 Aligned_cols=224 Identities=15% Similarity=0.136 Sum_probs=170.3
Q ss_pred CCEEEEeeCC------CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 17 LDYFAICSGD------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 17 g~~las~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
+..+++++.+ ++|++||+.. .....+.+|... +.+++|.|. +..|+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~------------------v~~~~~Spd---------g~~la 194 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQP------------------LMSPAWSPD---------GSKLA 194 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSC------------------EEEEEECTT---------SSEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCc------------------ceeeEEcCC---------CCEEE
Confidence 6677777654 7999999974 445555544443 445555554 77788
Q ss_pred EEeCCC---eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCc--EEEEeCCCCceeEEeecCCCCeEE
Q 006808 91 LGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 91 ~~~~~g---~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+++.++ .|++||+.+++.. .+ ..|...+.+++|+|+|+.|+ +++.++. |++||+.+++. ..+..|...+.+
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~ 271 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE 271 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred EEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence 888775 8999999998875 33 35778999999999999877 6666654 99999998876 566778889999
Q ss_pred EEEccCCCEEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCCCccccc
Q 006808 165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSA 237 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~~~~~~~ 237 (630)
++|+|+|++|++++ + .|++||+.+++. ..+..|...+.+++|+|+|++|++++..+ ..|++||+.+++..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-- 348 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-- 348 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--
Confidence 99999999888776 2 788999988764 44556777899999999999999887542 58999999887632
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcCCc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNI 284 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~ 284 (630)
.+.... .+....|+ |+|++|++++.++ .|++||+..+
T Consensus 349 ----~l~~~~-~~~~~~~s-----pdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 349 ----VLSSTF-LDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp ----ECCCSS-SCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ----EecCCC-CcCCeEEc-----CCCCEEEEEEcCCCccEEEEEECCCC
Confidence 122222 44556666 9999999998877 7999998644
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.3e-20 Score=189.55 Aligned_cols=269 Identities=12% Similarity=0.038 Sum_probs=192.1
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-EEEeCCC
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG 96 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g 96 (630)
++|++++.++.|++||..+++.+..+..... ......++|.+. +..+ +++..++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~~s~d---------g~~l~v~~~~~~ 56 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADA----------------GPTPMVPMVAPG---------GRIAYATVNKSE 56 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTC----------------TTCCCCEEECTT---------SSEEEEEETTTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCC----------------CCCccceEEcCC---------CCEEEEEeCCCC
Confidence 4789999999999999999998877652211 001223444443 4444 5556678
Q ss_pred eEEEEEccCCeeeEEccCCCC----CCEEEEEEecCCCEEEEEe------------CCCcEEEEeCCCCceeEEeecCCC
Q 006808 97 DVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~----~~v~~~~~s~~g~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
.|.+||+.+++.+..+..++. ..+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.. ..
T Consensus 57 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred eEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 999999999988765543331 2577899999999988886 579999999999988887775 45
Q ss_pred CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC------------------
Q 006808 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER------------------ 222 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~------------------ 222 (630)
.+.+++|+|+|++++++++.|++||+.+++.+..+..+... ..+.|+|++.++++++..++
T Consensus 136 ~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 136 QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214 (337)
T ss_dssp SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred CcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence 67889999999999888999999999999887777644311 12378999987766553333
Q ss_pred -----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEe
Q 006808 223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (630)
Q Consensus 223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (630)
.|.+||+.+++.. .............+.++ |+|++++++ ++.|++||+.+++.+....
T Consensus 215 ~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s-----~dg~~l~~~--~~~v~~~d~~~~~~~~~~~------ 277 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRVP------ 277 (337)
T ss_dssp GGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEEE------
T ss_pred cccccceEEEeCCCCCce----EeecCCCCCceeeEEEC-----CCCCEEEEe--CCeEEEEECCCCcCcceec------
Confidence 4689999887643 11222222233445666 999999888 6899999987664322110
Q ss_pred eccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccc
Q 006808 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (630)
....+.+++|+|||++| ++++.++.+++|
T Consensus 278 --------------------------------------------------~~~~~~~~~~s~dg~~l-~~~~~~~~i~v~ 306 (337)
T 1pby_B 278 --------------------------------------------------LPHSYYSVNVSTDGSTV-WLGGALGDLAAY 306 (337)
T ss_dssp --------------------------------------------------CSSCCCEEEECTTSCEE-EEESBSSEEEEE
T ss_pred --------------------------------------------------CCCceeeEEECCCCCEE-EEEcCCCcEEEE
Confidence 00135678999999988 666779999999
Q ss_pred eecc
Q 006808 378 YVQN 381 (630)
Q Consensus 378 ~~~~ 381 (630)
++..
T Consensus 307 d~~~ 310 (337)
T 1pby_B 307 DAET 310 (337)
T ss_dssp ETTT
T ss_pred ECcC
Confidence 9854
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=5.5e-21 Score=213.03 Aligned_cols=334 Identities=9% Similarity=0.033 Sum_probs=205.4
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEE-EEecccccccccccccccc-cccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.|. |+.+++++.|+ | +||+.+|+.+ ..+..+..... .++..- ........+.+++|.+. . .+
T Consensus 32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~v~~~~~spd-~---------~~ 95 (706)
T 2z3z_A 32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--LMPEGCKFQTTDAFPSFRTLDAGR-G---------LV 95 (706)
T ss_dssp EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--TC-----------CCCEEEEETTT-T---------EE
T ss_pred cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--hccchhccccccccCceeEEECCC-C---------eE
Confidence 777 67778888888 8 9999999873 33332221000 000000 00000134677788764 2 23
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-----CceeEEeecCCCC---
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKG--- 161 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~--- 161 (630)
+.+ .++.|++||+.+++..... .+...+.+++|+|+|+.|+++ .++.|++||+.+ ++.......+...
T Consensus 96 ~~~-~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 96 VLF-TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EEE-ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 333 4699999999998765333 466778999999999999885 689999999998 7766544433332
Q ss_pred -----------eEEEEEccCCCEEEEeC-----------------------------------CeEEEEECCCCceeeEe
Q 006808 162 -----------ISCMAVSSDGKMLATAA-----------------------------------GQLKTFNCSDHKKMQKF 195 (630)
Q Consensus 162 -----------v~~l~~~p~~~~l~~~~-----------------------------------g~i~lwd~~~~~~~~~~ 195 (630)
+.+++|+|||++|++++ ..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 48899999999998874 57999999988754433
Q ss_pred e--cCCCCeEEEEEeeCCcEEEEEeeCCC-----eEEEEEcCCCccccceeeeeecCCce--eeeeEEecCCccCC--CC
Q 006808 196 S--GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGVDD--AG 264 (630)
Q Consensus 196 ~--~h~~~v~~l~~sp~~~~l~~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~ 264 (630)
. .|...+.+++|+|+|++|++++. ++ .|++||+.+++.. ..+....+... .+....|+ | +|
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~v~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~s-----p~~dg 323 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEV-NRAQNECKVNAYDAETGRFV--RTLFVETDKHYVEPLHPLTFL-----PGSNN 323 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEE-CTTSCEEEEEEEETTTCCEE--EEEEEEECSSCCCCCSCCEEC-----TTCSS
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEe-CCCCCeeEEEEEECCCCcee--eEEEEccCCCeECccCCceee-----cCCCC
Confidence 2 46678999999999999988774 54 8999999987321 11221112211 12344565 9 99
Q ss_pred CEEEEEecCCcEEEEEcC-CcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceee
Q 006808 265 LYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQ 343 (630)
Q Consensus 265 ~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~ 343 (630)
+++++++.+|.++||.+. ++..+.........+.....++++++ .|+.++.+.. .....++...-.. ....
T Consensus 324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~----~l~~~~~~~~--~~~~~l~~~d~~~--~~~~ 395 (706)
T 2z3z_A 324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT----RLYFESTEAS--PLERHFYCIDIKG--GKTK 395 (706)
T ss_dssp EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS----EEEEEESSSC--TTCBEEEEEETTC--CCCE
T ss_pred EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC----EEEEEecCCC--CceEEEEEEEcCC--CCce
Confidence 999999999999999875 44433333222211111112677776 5655444321 0012344433111 1122
Q ss_pred EEeccCCCcEEEeecCCcceeeccccce---eccccceeccc
Q 006808 344 KILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQNR 382 (630)
Q Consensus 344 ~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~~~~ 382 (630)
.+ .|...+.+++|||||++++++++.+ ..+++|++..+
T Consensus 396 ~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 396 DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 22 3667789999999999884444433 45888987544
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=4.6e-20 Score=181.52 Aligned_cols=221 Identities=11% Similarity=0.063 Sum_probs=154.8
Q ss_pred EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEE
Q 006808 22 ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLAL 101 (630)
Q Consensus 22 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iw 101 (630)
.++.|++|++||+.+++... +..+.. .+.++.|.|. +.+|++++ ++.|++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~------------------~v~~~~~spd---------g~~l~~~~-~~~i~~~ 67 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPE------------------LFEAPNWSPD---------GKYLLLNS-EGLLYRL 67 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESS------------------CCEEEEECTT---------SSEEEEEE-TTEEEEE
T ss_pred CCCcceeEEEEeCCCCceee-eccCCc------------------ceEeeEECCC---------CCEEEEEc-CCeEEEE
Confidence 34568999999999887664 333333 3445666554 66777765 7899999
Q ss_pred EccC-CeeeEEccCCC-CCCEEEEEEecCCCEEEEEe--CCCcEEE--EeCCCCceeEEeecCCCCeEEEEEccCCCEEE
Q 006808 102 AVSA-GQLKWRLSDCH-PGGVSAISFATHGSCIYSAG--ADGMVCE--IDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (630)
Q Consensus 102 d~~~-~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~--~dg~v~i--wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 175 (630)
|+.+ ++..... ..| ...+.+++|+|+|++|++++ .++...+ |++.+++ ...+..+ ..+.+++|+|++++|+
T Consensus 68 d~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 68 SLAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFT 144 (297)
T ss_dssp ESSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEE
T ss_pred eCCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEE
Confidence 9999 7765333 344 47789999999999999988 3344444 5555554 3444433 3589999999999887
Q ss_pred E-eC--CeEEEEEC--CCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceee
Q 006808 176 T-AA--GQLKTFNC--SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (630)
Q Consensus 176 ~-~~--g~i~lwd~--~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (630)
. ++ +.+++|++ .++ ....+..|...+.++.|+|+++++++++..++.+++|++...... ...+......+
T Consensus 145 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~ 219 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS----VERITDSAYGD 219 (297)
T ss_dssp EEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----EEECCCCSEEE
T ss_pred EEECCCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC----cEEEecCCccc
Confidence 4 43 77888875 344 345666788899999999999998887755888999988632211 22333334455
Q ss_pred eeEEecCCccCCCCCEEEEEecC-----------CcEEEEEcCCc
Q 006808 251 DCRCIDNGGVDDAGLYVLAISET-----------GVCYIWYGQNI 284 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~ 284 (630)
....|+ |+|++|++++.+ +.|++||+.++
T Consensus 220 ~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 220 WFPHPS-----PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp EEEEEC-----TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCeEEC-----CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 566676 999999988876 45888887654
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.2e-19 Score=182.82 Aligned_cols=274 Identities=14% Similarity=0.160 Sum_probs=177.0
Q ss_pred EEEEeeCCCcEEEEECC-CCcE--EEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 19 YFAICSGDARIKIWDTL-KGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~-~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++++++.|+.|++|++. ++.. +..+. +.. .+.+++|.+. +.+|++++.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~spd---------g~~l~~~~~~ 58 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPG------------------QVQPMVVSPD---------KRYLYVGVRP 58 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS------------------CCCCEEECTT---------SSEEEEEETT
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCC------------------CCceEEECCC---------CCEEEEeecC
Confidence 44455779999999985 3432 22221 222 2345556554 6667777776
Q ss_pred -CeEEEEEcc--CCee--eEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCC---CCceeEEeecCCCCeEEEE
Q 006808 96 -GDVLALAVS--AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL---TGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 96 -g~v~iwd~~--~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~---~~~~~~~~~~~~~~v~~l~ 166 (630)
+.|.+|++. ++.. +..+. .+ ..+.+++|+|+|+++++++. ++.|.+||+. .++.+..+.. ...+.+++
T Consensus 59 ~~~v~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~ 135 (343)
T 1ri6_A 59 EFRVLAYRIAPDDGALTFAAESA-LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSAN 135 (343)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEE-CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCE
T ss_pred CCeEEEEEecCCCCceeeccccc-cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEE
Confidence 899999997 5553 22332 22 37899999999998876664 8899999994 3445555553 34688999
Q ss_pred EccCCCEEEEeC---CeEEEEECCC-Cceee----Eeec-CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC--Cccc
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQ----KFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--VKKQ 235 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~-~~~~~----~~~~-h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~--~~~~ 235 (630)
|+|+|+++++++ +.|++||+.+ ++... .+.. ....+.+++|+|+++++++++..++.|.+|++.. +...
T Consensus 136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 999999877765 8999999987 65432 2332 3347889999999998877765689999999964 3221
Q ss_pred cceeeeeecCC---ceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchh
Q 006808 236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
........... ......+.|+ |+|++|++++ .++.|.+|++..... . .. ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s-----~dg~~l~v~~~~~~~i~v~d~~~~~~----~-~~-~~-------------- 270 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGS----V-LS-KE-------------- 270 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSC----C-EE-EE--------------
T ss_pred EEeeccccCccccccCCccceEEC-----CCCCEEEEEecCCCEEEEEEEcCCCC----c-eE-Ee--------------
Confidence 00011111111 1223345666 9998887554 689999999852100 0 00 00
Q ss_pred hhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
..+..+. .+..++|+|||++|.+++..++.+++|++.
T Consensus 271 -------------------------------~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 271 -------------------------------GFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp -------------------------------EEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred -------------------------------eeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 0011111 266789999999884555578999999764
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=2.2e-19 Score=180.34 Aligned_cols=237 Identities=9% Similarity=0.046 Sum_probs=167.1
Q ss_pred EeEECCCCCEEEEeeC-CCcEEEEECCCCcE-EEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+++|+|+|+++++++. ++.|.+||..+++. ...+..+..... +++|.+. +.
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~------------------~~~~s~d---------g~ 96 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA------------------DVDITPD---------DQ 96 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC------------------CEEECTT---------SS
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc------------------ceEECCC---------CC
Confidence 5699999997776665 89999999999887 555543322221 2444443 66
Q ss_pred EEEEEeCCC---eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCc-EEEEeCCCCcee----EEeecC
Q 006808 88 LLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM-VCEIDPLTGSLL----GKFRAS 158 (630)
Q Consensus 88 ~l~~~~~~g---~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~-v~iwd~~~~~~~----~~~~~~ 158 (630)
+++++..++ .|.+||+.+++.+..+. +...+.+++|+|+|++++++ ..++. |.+|++.....+ ......
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 174 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG 174 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence 677555553 89999999998876653 34567999999999866555 55578 999998754332 122233
Q ss_pred CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
...+.+++|+|+|+++++++ +.|++||+.+++. +..+..+ ..+..++|+|+|+++++++..++.|.+||+.++
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 45689999999999665554 7999999999988 7777643 567899999999988877656788999999887
Q ss_pred ccccceeeeeecCC----ce---eeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCc
Q 006808 233 KKQSASCVLAMEHP----AV---FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI 284 (630)
Q Consensus 233 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~ 284 (630)
+.. .+...... .. ....+.|+ |+|++|++++. ++.|.+||+...
T Consensus 254 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 254 TLS---FVKSFGHGLLIDPRPLFGANQMALN-----KTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEE---EEEEEECCCCCCCGGGTTCCCEEEC-----TTSSEEEEEETTTTEEEEEETTSC
T ss_pred cee---eecccccccccCCCCcccccceEEC-----CCCCEEEEecCCCCcEEEEEecCC
Confidence 642 11111111 11 11234665 99998876655 669999998654
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=4.7e-19 Score=178.57 Aligned_cols=235 Identities=11% Similarity=0.132 Sum_probs=161.2
Q ss_pred eEeEECCCCCEEEEeeCC-CcEEEEECC--CCcEE--EEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGD-ARIKIWDTL--KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d-g~i~vwd~~--~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+++|+|+|++|++++.+ +.|.+|++. ++... ..+..+. .+..++|.+.
T Consensus 41 ~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~s~d------- 94 (343)
T 1ri6_A 41 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-------------------SLTHISTDHQ------- 94 (343)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-------------------CCSEEEECTT-------
T ss_pred ceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-------------------CCcEEEEcCC-------
Confidence 345999999999988876 999999987 55532 3332111 3345666554
Q ss_pred cCCcEEEEEe-CCCeEEEEEcc---CCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCC-CceeE----
Q 006808 84 LGSSLLVLGT-GGGDVLALAVS---AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GSLLG---- 153 (630)
Q Consensus 84 ~~~~~l~~~~-~~g~v~iwd~~---~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~-~~~~~---- 153 (630)
+..+++++ .++.|.+||+. .......+. ....+.+++|+|+|+++++++ .++.|.+||+.+ ++...
T Consensus 95 --g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 95 --GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp --SSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred --CCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence 56566655 47889999994 333443332 334689999999999888877 899999999987 65432
Q ss_pred Eeec-CCCCeEEEEEccCCCEEEEeC---CeEEEEECCC--Cce--eeEee----cC--CCCeEEEEEeeCCcEEEEEee
Q 006808 154 KFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFS----GH--PGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 154 ~~~~-~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~--~~~--~~~~~----~h--~~~v~~l~~sp~~~~l~~~~~ 219 (630)
.+.. ....+.+++|+|+++++++++ +.|++|++.. ++. ...+. ++ ...+..++|+|+|++|++++.
T Consensus 171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence 2232 334788999999999776554 7999999953 432 22222 11 235678999999999887765
Q ss_pred CCCeEEEEEcCC--CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcC
Q 006808 220 GERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQ 282 (630)
Q Consensus 220 ~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~ 282 (630)
.++.|.+|++.. +... ....+..... ...+.|+ |+|++|++++ .++.|.+|++.
T Consensus 251 ~~~~i~v~d~~~~~~~~~---~~~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLS---KEGFQPTETQ-PRGFNVD-----HSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TTTEEEEEEECTTSCCEE---EEEEEECSSS-CCCEEEC-----TTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCEEEEEEEcCCCCceE---EeeeecCCCc-cceEEEC-----CCCCEEEEecCCCCeEEEEEEc
Confidence 689999999983 2211 2222222222 4556666 9999988887 58999999543
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=9.8e-20 Score=211.39 Aligned_cols=267 Identities=11% Similarity=-0.022 Sum_probs=182.9
Q ss_pred cEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec--------
Q 006808 87 SLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-------- 157 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------- 157 (630)
.+++++..+|.+.||.+.. +.....+ ..|. .+..++|+|+|++++.+ .++.|++||+... .+..+..
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~ 290 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPED 290 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCS
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccc
Confidence 4555666778888887653 3233233 2344 46677999999988887 5899999999544 3335544
Q ss_pred ---CCCCeEEEEEc-cCCCEEEEeC-CeEEEEECCCCceeeEeecCCC-CeEEEEEeeCCcEEEEEeeCCCeEE-EEEcC
Q 006808 158 ---STKGISCMAVS-SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIA-LWRTD 230 (630)
Q Consensus 158 ---~~~~v~~l~~~-p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~~~~~~d~~i~-vwd~~ 230 (630)
|...+.+++|+ |+|++|++++ +.|++|++.++... .+..|.. .+..++|+ +|+.|++++ .+..+. +|++.
T Consensus 291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~ 367 (1045)
T 1k32_A 291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYR 367 (1045)
T ss_dssp EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETT
T ss_pred ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECC
Confidence 23368999999 9999998887 89999999877644 4666777 89999999 999999887 477888 99988
Q ss_pred CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccch
Q 006808 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (630)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (630)
.+... .+. .+...+....|+ |+|++|++++.++.|++||+.+++...........+ ....|+|+++
T Consensus 368 ~~~~~----~l~--~~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v-~~~~~SpDG~-- 433 (1045)
T 1k32_A 368 TGKAE----KFE--ENLGNVFAMGVD-----RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI-TDFTISDNSR-- 433 (1045)
T ss_dssp TCCEE----ECC--CCCCSEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC-CCEEECTTSC--
T ss_pred CCCce----Eec--CCccceeeeEEC-----CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc-cceEECCCCC--
Confidence 76532 112 233344556676 999999999999999999999886543321111111 1122788888
Q ss_pred hhhhhhccccc--cc-cCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 311 TAAIFAAKLQD--IV-KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 311 ~~~i~~~~~d~--~~-~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+|++++.++ .. ...+..+.+.. ... .....+..|...+..++|+|||++| +.++.++..+.|+.
T Consensus 434 --~la~~~~~~~~~~~~~~~~~i~l~d-~~~-g~~~~l~~~~~~~~~~~~spdG~~l-~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 434 --FIAYGFPLKHGETDGYVMQAIHVYD-MEG-RKIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDR 500 (1045)
T ss_dssp --EEEEEEEECSSTTCSCCEEEEEEEE-TTT-TEEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECS
T ss_pred --eEEEEecCccccccCCCCCeEEEEE-CCC-CcEEEeeCCCcccCCceEcCCCCEE-EEEecccCCcCcch
Confidence 777766532 00 00112333332 211 2255667788889999999999999 77777777777764
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=5.5e-19 Score=205.10 Aligned_cols=241 Identities=12% Similarity=0.014 Sum_probs=178.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEec-ccccccccccCCcE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL-SVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~ 88 (630)
+.+|||||++||++. ++.|++|++..+. +..+..+..... ..+ ......+..+.|. |. +..
T Consensus 249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~-~~~------~~~~~~v~~~~~S~pd---------G~~ 310 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESP-EDR------IISIPSKFAEDFSPLD---------GDL 310 (1045)
T ss_dssp EEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBC-CSE------EEECGGGGEEEEEECG---------GGC
T ss_pred eeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccccc-ccc------cccccccceeeecCCC---------CCE
Confidence 459999999999885 8999999995443 334443211000 000 0011235677787 54 556
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCC-CEEEEEEecCCCEEEEEeCCCcEE-EEeCCCCceeEEeecCCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADGMVC-EIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
|++++ ++.|.+|++.++... .+ ..|.. .+.+++|+ +|+.|++++.++.+. +||+.+++... +..+...+.+++
T Consensus 311 la~~~-~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~ 385 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVL-KV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMG 385 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEE-EC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEE
T ss_pred EEEEE-cCEEEEEcCCCCceE-Ec-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeE
Confidence 77766 889999999888764 33 35777 89999999 999999998888888 99998776543 446778899999
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC---------CeEEEEEcCCCccc
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------RYIALWRTDGVKKQ 235 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d---------~~i~vwd~~~~~~~ 235 (630)
|+|+|++|++++ +.|++||+.+++....+.+|...+.+++|+|+|++|++++..+ +.|++||+.+++..
T Consensus 386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~ 465 (1045)
T 1k32_A 386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 465 (1045)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE
Confidence 999999999887 7999999999988777778999999999999999998887422 48999999886522
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.+..+........|+ |+|++|++++.++...+|+....
T Consensus 466 ------~l~~~~~~~~~~~~s-----pdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 466 ------AATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp ------ECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSS
T ss_pred ------EeeCCCcccCCceEc-----CCCCEEEEEecccCCcCcchhcc
Confidence 222222233445566 99999999999888888876543
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=3.1e-19 Score=175.52 Aligned_cols=231 Identities=11% Similarity=0.058 Sum_probs=162.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+.| .+++|+|+|++|++++ ++.|++||+.+ ++.......+ ....+.++.|.+.
T Consensus 42 ~~v--~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-----------------~~~~~~~~~~spd------ 95 (297)
T 2ojh_A 42 ELF--EAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-----------------ATICNNDHGISPD------ 95 (297)
T ss_dssp SCC--EEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-----------------CCCBCSCCEECTT------
T ss_pred cce--EeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-----------------ccccccceEECCC------
Confidence 456 4569999999999987 78999999998 7766544322 1223445666554
Q ss_pred ccCCcEEEEEeC--CCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCC-CceeEEee
Q 006808 83 KLGSSLLVLGTG--GGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLT-GSLLGKFR 156 (630)
Q Consensus 83 ~~~~~~l~~~~~--~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~-~~~~~~~~ 156 (630)
+..|++++. ++. |.+|+..++... .+. +...+.+++|+|+|+.|+ +++.++.+++|++.. +.....+.
T Consensus 96 ---g~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 96 ---GALYAISDKVEFGKSAIYLLPSTGGTPR-LMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp ---SSEEEEEECTTTSSCEEEEEETTCCCCE-ECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred ---CCEEEEEEeCCCCcceEEEEECCCCceE-Eee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 677888883 334 555555555532 332 233599999999999876 777899999998532 23345566
Q ss_pred cCCCCeEEEEEccCCCEEEEeC---CeEEEEECC-CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC----------C
Q 006808 157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------R 222 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d----------~ 222 (630)
.+...+.+++|+|+|++|++++ +.+++|++. .+..+..+..|...+.+++|+|+|++|++++..+ +
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 6778899999999999877654 678888775 4556677777888899999999999998887421 5
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
.|++||+.+++.. .+.....+...+..+.|+ |++.+|++++.+.
T Consensus 250 ~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWS-----PDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCE---EEEEEEESTTTSCSCCBC-----TTSSEEEEEEECC
T ss_pred EEEEEecCCCCce---eeeccCCCCcccccceEC-----CCCCEEEEEEecc
Confidence 6999999887643 233222222233444555 9999998887754
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=3e-19 Score=180.60 Aligned_cols=238 Identities=11% Similarity=0.108 Sum_probs=173.7
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL- 89 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l- 89 (630)
+++++++.++++++.+++|++||..+++.+..+..+.. .....++|.+. +..+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~s~d---------g~~~~ 58 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-----------------FGPGTAMMAPD---------NRTAY 58 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-----------------CSSCEEEECTT---------SSEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-----------------CCCceeEECCC---------CCEEE
Confidence 48899999999999999999999999998877653220 01224445443 4444
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCC-----CCCEEEEEEecCCCEEEEEeCC------------CcEEEEeCCCCce-
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCH-----PGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSL- 151 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h-----~~~v~~~~~s~~g~~l~s~~~d------------g~v~iwd~~~~~~- 151 (630)
+++..++.|.+||+.+++....+...+ ...+.+++|+|+|+++++++.+ +.|.+||+.+++.
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 455568899999999998876654333 2237889999999999988865 8999999988543
Q ss_pred --eEEeecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCC------------------------------
Q 006808 152 --LGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP------------------------------ 199 (630)
Q Consensus 152 --~~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~------------------------------ 199 (630)
+..+.. ...+.+++|+|+|+ ++++++.|++||+.+++.+..+..+.
T Consensus 139 ~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 139 KPVRTFPM-PRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp CCSEEEEC-CSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred ceeeeccC-CCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 344443 34688999999999 66677779999999988766654321
Q ss_pred --------------------------------------CCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 200 --------------------------------------GAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 200 --------------------------------------~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
..+..++|+| ++++++++ ++.|.+||+.+++.. ..
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~---~~ 290 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLI---KA 290 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEE---EE
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEE---EE
Confidence 1345677789 99988876 679999999887643 22
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
....+ . ...+.++ |+|++|++++.++.|.+||..+++.+...
T Consensus 291 ~~~~~--~-~~~~~~s-----~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 291 ANLDH--T-YYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EECSS--C-CCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EcCCC--C-ccceEEC-----CCCCEEEEecCCCeEEEEeccccceeeee
Confidence 22222 2 2345565 89998888888999999999888765543
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.2e-19 Score=188.88 Aligned_cols=210 Identities=13% Similarity=0.048 Sum_probs=152.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++++++++.++++++.++ ++||+............+.. ....+.+. ..-+....+.+++|.+. +.+|
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~v~~l~~spd---------g~~l 107 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPN--KIVDKVQG-LLVPMKFPIHHLALSCD---------NLTL 107 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTT--CEEECCCC-EEECCSSCEEEEEECTT---------SCEE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcc--cccccCcc-ccccCCCcccEEEEcCC---------CCEE
Confidence 449999999999999887 89987642111000000000 00000000 00112346888999876 5667
Q ss_pred E----EEeCCCeEEEEEccCC--------ee--eEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEE
Q 006808 90 V----LGTGGGDVLALAVSAG--------QL--KWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 90 ~----~~~~~g~v~iwd~~~~--------~~--~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (630)
+ +|+.++.|+|||+.++ +. ......+|...|.+++|+|+ +.+|++++.||+|++||++++..+..
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 7 6777899999998765 11 13455679999999999997 78999999999999999999977777
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------CCCeEEEEEeeCCcEEEEEeeCCC---
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGER--- 222 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l~~~~~~d~--- 222 (630)
...|...|.+++|+|+|++|++|+ |.|++||++ ++....+..| ...|.++.|++++.++++.+..+|
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 777888999999999999999998 899999998 5555555433 337999999999988877665553
Q ss_pred ---eEEEEEcCCCc
Q 006808 223 ---YIALWRTDGVK 233 (630)
Q Consensus 223 ---~i~vwd~~~~~ 233 (630)
.+++|++....
T Consensus 267 ~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 267 TSPDVVMALLPKKE 280 (434)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCCceEEEEeccCC
Confidence 38999998653
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=3.5e-18 Score=172.84 Aligned_cols=242 Identities=11% Similarity=0.109 Sum_probs=158.4
Q ss_pred EeEECCCCCEEEEeeC---CCcEEEEECCCCcE--EEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAICSG---DARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~s~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.++|+|||+ |++++. ++.|++|++.++.. +..+..+... ...++|.+.
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~------------------p~~~a~spd-------- 96 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP------------------PAYVAVDEA-------- 96 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC------------------CSEEEEETT--------
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC------------------CEEEEECCC--------
Confidence 459999999 554443 68999999977663 3332222222 234444443
Q ss_pred CCcEEEEEe-CCCeEEEEEccC-Ce--eeEEccC-C-------CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCce
Q 006808 85 GSSLLVLGT-GGGDVLALAVSA-GQ--LKWRLSD-C-------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSL 151 (630)
Q Consensus 85 ~~~~l~~~~-~~g~v~iwd~~~-~~--~~~~~~~-~-------h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~-~~~~ 151 (630)
+++|++++ .++.|.+|++.. +. .+..+.. + +...+.+++|+|+|+.+++...++.|.+|++. +++.
T Consensus 97 -g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 97 -RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp -TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred -CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence 66677777 678999999963 32 2222211 1 12348899999999966666678899999998 5543
Q ss_pred eE--EeecC-CCCeEEEEEccCCCEEEEeC---CeEEEEECCC--Cce--eeEeecCC------CCeEEEEEeeCCcEEE
Q 006808 152 LG--KFRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFSGHP------GAVRFMTFSDNGKYVL 215 (630)
Q Consensus 152 ~~--~~~~~-~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~--~~~--~~~~~~h~------~~v~~l~~sp~~~~l~ 215 (630)
.. .+..+ ...+..++|+|+|+++++++ +.|.+|++.. ++. +..+.... ..+..++|+|+|++|+
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 32 22332 33678899999999777654 7999999874 442 22333222 3488899999999987
Q ss_pred EEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEE--EcCCccc
Q 006808 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW--YGQNIEE 286 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iw--d~~~~~~ 286 (630)
+++..++.|.+|++...... ..+............+.|+ |+|++|++++. ++.|.+| |..+++.
T Consensus 256 v~~~~~~~v~v~~~~~~g~~--~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADGHL--TLIQQISTEGDFPRDFDLD-----PTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEETTTEEEEEEECGGGCE--EEEEEEECSSSCCCEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEeCCCCEEEEEEECCCCcE--EEeEEEecCCCCcCeEEEC-----CCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 76657899999999743211 1222222222334456666 99999988876 4899999 4455544
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.83 E-value=3.2e-19 Score=199.95 Aligned_cols=280 Identities=8% Similarity=-0.012 Sum_probs=194.4
Q ss_pred ceeeEEecccccccccccCCcEEEEEeC-CC-----eEEEEEccCCeeeEEccCCCC-----------------------
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG-----DVLALAVSAGQLKWRLSDCHP----------------------- 117 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g-----~v~iwd~~~~~~~~~~~~~h~----------------------- 117 (630)
.+..++|.+. ++.|++++. +| .|++||+.+++....+. .+.
T Consensus 38 ~~~~~~~Spd---------G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 38 TLMKPKVAPD---------GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCEEEEECTT---------SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-GGGTC--------------------C
T ss_pred CCCCceEecC---------CCEEEEEeccCCCCcccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhcc
Confidence 4667778765 777888887 87 89999999988654432 222
Q ss_pred -CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceee
Q 006808 118 -GGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 118 -~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~ 193 (630)
..|.+++|+|||++|++++. +.|++||+.++. ....+..+...+.+++|+|||++|++++ +.|++||+.+++...
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence 23789999999999998876 899999999883 3445666778899999999999999888 899999999887655
Q ss_pred EeecCCCC----------------eEEEEEeeCCcEEEEEeeCCC---------------------------------eE
Q 006808 194 KFSGHPGA----------------VRFMTFSDNGKYVLSSAVGER---------------------------------YI 224 (630)
Q Consensus 194 ~~~~h~~~----------------v~~l~~sp~~~~l~~~~~~d~---------------------------------~i 224 (630)
....+... +.+++|||||++|++++. |+ .|
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 44433332 478999999999998874 43 78
Q ss_pred EEEEcCC-Cccccceeeeee-cCCceeeeeEEecCCccCCCCCEEEEEec-----CCcEEEEEcCCcccccccCceeEE-
Q 006808 225 ALWRTDG-VKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEELRNTKATKIL- 296 (630)
Q Consensus 225 ~vwd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~- 296 (630)
++||+.+ ++.. .+... .+...+..+.+ |||++|++++. ++.|++||+.+++...........
T Consensus 266 ~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~-------pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 266 GVISPAEQAQTQ---WIDLGKEQDIYLARVNW-------RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp EEECSSTTCCCE---EECCCSCSSEEEEEEEE-------EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCceE---EecCCCCcceEEEEEEe-------CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 8999887 6532 11111 23333333333 48898887764 568999999888654322111100
Q ss_pred --eeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEE-eecCCcceeecccccee-
Q 006808 297 --SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLK- 372 (630)
Q Consensus 297 --~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~- 372 (630)
......|+|+++ .+++++.++.. +++...- ... ...+..|...+..+ .|+|||+.|.++++.++
T Consensus 336 ~~~~~~~~~spdg~----~~~~~~~~g~~-----~l~~~~~--~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 336 VPLHNSLRFLDDGS----ILWSSERTGFQ-----HLYRIDS--KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA 403 (741)
T ss_dssp CCCCSCCEECTTSC----EEEEECTTSSC-----EEEEECS--SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT
T ss_pred CCcCCceEECCCCe----EEEEecCCCcc-----EEEEEcC--CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC
Confidence 011233677776 67777666532 3333321 112 55667788888887 59999997756676666
Q ss_pred -ccccceec
Q 006808 373 -SKRGRYVQ 380 (630)
Q Consensus 373 -~~~~w~~~ 380 (630)
.+++|.+.
T Consensus 404 ~~~~l~~~~ 412 (741)
T 2ecf_A 404 RESQIYAVP 412 (741)
T ss_dssp TCBEEEEEE
T ss_pred ceEEEEEEE
Confidence 78899874
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.6e-19 Score=199.91 Aligned_cols=328 Identities=9% Similarity=0.013 Sum_probs=195.7
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++|+|||++++++ .|++|++||+.+++....+..+... ...+.++.|.|. ++.|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~SpD---------g~~l 74 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK---------------SVNASNYGLSPD---------RQFV 74 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH---------------TTTCSEEEECTT---------SSEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc---------------ccceeeEEECCC---------CCeE
Confidence 45999999766554 6999999999999887665533221 012345555554 7778
Q ss_pred EEEeC---------CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe-ecCC
Q 006808 90 VLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST 159 (630)
Q Consensus 90 ~~~~~---------~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~ 159 (630)
++++. ++.|++||+.+++.+... .....+.+++|+|||+.|+.+. ++.|++||+.+++..+.. .++.
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred EEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 88776 688999999998873111 1125688999999999998885 789999999888765432 2222
Q ss_pred CCe-----------------EEEEEccCCCEEEEeC-C-----------------------------------eEEEEEC
Q 006808 160 KGI-----------------SCMAVSSDGKMLATAA-G-----------------------------------QLKTFNC 186 (630)
Q Consensus 160 ~~v-----------------~~l~~~p~~~~l~~~~-g-----------------------------------~i~lwd~ 186 (630)
..| .+++|+|||++|++++ . .|++||+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence 222 4899999999999876 1 7889999
Q ss_pred CCCcee--------eEeecCCCCeEEEEEeeCCcEEEEEeeC-C--CeEEEEE----cCCCccccceeeee---ecCCce
Q 006808 187 SDHKKM--------QKFSGHPGAVRFMTFSDNGKYVLSSAVG-E--RYIALWR----TDGVKKQSASCVLA---MEHPAV 248 (630)
Q Consensus 187 ~~~~~~--------~~~~~h~~~v~~l~~sp~~~~l~~~~~~-d--~~i~vwd----~~~~~~~~~~~~~~---~~~~~~ 248 (630)
.+++.. ..+.+|...+.+++|+||++.+++.... + ..|.+|| +.+++.. .+.. ..+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~---~~~~~~~~~~~~~ 308 (719)
T 1z68_A 232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP---KTQEHIEESRTGW 308 (719)
T ss_dssp SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC---GGGEEEEECSSSC
T ss_pred CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE---EEEecccccCCce
Confidence 888753 1234678889999999998766664321 1 2488899 7666533 1221 123322
Q ss_pred ee----eeEEecCCccCCCCCEEEE--EecCC--cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 249 FM----DCRCIDNGGVDDAGLYVLA--ISETG--VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 249 ~~----~~~~~~~~~~~~~~~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
+. ....|+ |||+.|+. ...+| .|++|++.+++. .........+.... +. +++ .|+..+.+
T Consensus 309 ~~~~~~~~~~~s-----pdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~-~~-d~~----~i~~~~~~ 376 (719)
T 1z68_A 309 AGGFFVSTPVFS-----YDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIF-RV-TQD----SLFYSSNE 376 (719)
T ss_dssp SSSSSCCCCEEC-----TTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEE-EE-CSS----EEEEEESC
T ss_pred EccccCCccEEC-----CCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEE-EE-eCC----EEEEEEec
Confidence 22 144565 89986554 44556 566677766542 21111111011000 12 333 44433332
Q ss_pred ccccCCceeEEEEEcCccCceeeEEe----ccCCCcEEEeecCCcceeeccccce--eccccceec
Q 006808 321 DIVKPASVHTFVAYGLLLKPSFQKIL----VNSGEDINLNCSQDGVLLPMSQSLL--KSKRGRYVQ 380 (630)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~----~h~~~v~~~~~s~dg~~l~~s~s~d--~~~~~w~~~ 380 (630)
+.......+++......-....+.+. +|...+..+.|||||.+++++++.+ -.+.+|++.
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 00000122333333100000012222 2556788999999999885555544 345566664
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=2e-17 Score=167.30 Aligned_cols=233 Identities=12% Similarity=0.081 Sum_probs=152.1
Q ss_pred CcEEEEEeC---CCeEEEEEccCCeeeE-EccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCC-CC--ceeEEeec
Q 006808 86 SSLLVLGTG---GGDVLALAVSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL-TG--SLLGKFRA 157 (630)
Q Consensus 86 ~~~l~~~~~---~g~v~iwd~~~~~~~~-~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~-~~--~~~~~~~~ 157 (630)
+. +++++. ++.|.+|++.++.... .....+...+..++|+|+|++|++++ .++.|.+|++. ++ +.+..+..
T Consensus 51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~ 129 (347)
T 3hfq_A 51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH 129 (347)
T ss_dssp CE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred Ce-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec
Confidence 55 555544 5789999998776421 11124567789999999999988887 78999999996 33 23333332
Q ss_pred C---------CCCeEEEEEccCCCEEEEeC--CeEEEEECC-CCcee--eEeecC-CCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 158 S---------TKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKKM--QKFSGH-PGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 158 ~---------~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~-~~~~~--~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
. ...+.+++|+|+|+++++.. +.|++|++. +++.. ..+..+ ...+..++|+|+|+++++++..++
T Consensus 130 ~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 209 (347)
T 3hfq_A 130 SGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS 209 (347)
T ss_dssp CCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC
Confidence 1 12488999999999555544 799999998 45432 222322 236788999999998888776788
Q ss_pred eEEEEEcCC--Cccccceeeeeec-CC-----ceeeeeEEecCCccCCCCCEEEE-EecCCcEEEEEcCCcccccccCce
Q 006808 223 YIALWRTDG--VKKQSASCVLAME-HP-----AVFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 223 ~i~vwd~~~--~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.|.+|++.. ++.. ...... .. ......+.|+ |+|++|++ ...++.|.+|++.....+.
T Consensus 210 ~v~v~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~i~~s-----pdG~~l~v~~~~~~~v~v~~~~~~g~~~----- 276 (347)
T 3hfq_A 210 QIASLKYDTQTGAFT---QLGIVKTIPADYTAHNGAAAIRLS-----HDGHFLYVSNRGYNTLAVFAVTADGHLT----- 276 (347)
T ss_dssp EEEEEEEETTTTEEE---EEEEEESSCTTCCSCCEEEEEEEC-----TTSCEEEEEEETTTEEEEEEECGGGCEE-----
T ss_pred EEEEEEecCCCCceE---EeeeeeecCCCCCCCCcceeEEEC-----CCCCEEEEEeCCCCEEEEEEECCCCcEE-----
Confidence 999999875 3321 111111 11 1234556666 99998854 5568999999985211100
Q ss_pred eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceec
Q 006808 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (630)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (630)
.+ ..+..+...+..++|+|||++|.+++..++.
T Consensus 277 --~~---------------------------------------------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 277 --LI---------------------------------------------QQISTEGDFPRDFDLDPTEAFVVVVNQNTDN 309 (347)
T ss_dssp --EE---------------------------------------------EEEECSSSCCCEEEECTTSSEEEEEETTTTE
T ss_pred --Ee---------------------------------------------EEEecCCCCcCeEEECCCCCEEEEEEcCCCc
Confidence 00 0111222345689999999988455555688
Q ss_pred ccccee
Q 006808 374 KRGRYV 379 (630)
Q Consensus 374 ~~~w~~ 379 (630)
+.+|.+
T Consensus 310 v~v~~~ 315 (347)
T 3hfq_A 310 ATLYAR 315 (347)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999965
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=1.7e-17 Score=167.93 Aligned_cols=233 Identities=9% Similarity=0.092 Sum_probs=172.5
Q ss_pred EeEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|+|+|++++++ ..++.|.+||..+++.+..+..+..... . ........++.|.+. ++.
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~s~d---------g~~ 154 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT------E---EVRPLQPRELVADDA---------TNT 154 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC------S---SCCCCEEEEEEEETT---------TTE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc------c---ccCCCCCceEEECCC---------CCE
Confidence 45999999966555 4579999999999998877764321100 0 000112445666654 555
Q ss_pred EEEEe--CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec----CCCCe
Q 006808 89 LVLGT--GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI 162 (630)
Q Consensus 89 l~~~~--~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v 162 (630)
+++++ .++.|.+||+.+++....+. .+...+.+++|+|+|+++++++.++.|.+||+.+++.+..+.. +...+
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 66665 47889999999999876664 3455688999999999999999999999999999998887765 34467
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
..++|+|+++++++++ +.|.+||+.+++.+..+..+. ...++|+|+++++++++..++.|.+||+.+++..
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---- 307 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV---- 307 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----
Confidence 8899999999877765 799999999999888776443 2579999999988777756899999999887643
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
..+.... ....+.|+ |+|++|+++..++
T Consensus 308 -~~~~~~~-~~~~~~~s-----~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 308 -KTFDTPT-HPNSLALS-----ADGKTLYVSVKQK 335 (353)
T ss_dssp -EEEECCS-EEEEEEEC-----TTSCEEEEEEECC
T ss_pred -EEEecCC-CCCeEEEc-----CCCCEEEEEEccc
Confidence 2222222 33555666 8999887776654
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=5.1e-18 Score=170.45 Aligned_cols=241 Identities=10% Similarity=0.041 Sum_probs=172.8
Q ss_pred eEeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
..++|+|+|++++ +++.++.|.+||+.+++.+..+....... ......++.|.+. +.
T Consensus 37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~d---------g~ 94 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------------RVKSLFGAALSPD---------GK 94 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------------EEECTTCEEECTT---------SS
T ss_pred cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------------ccccccceEECCC---------CC
Confidence 3459999998765 55567899999999998877665211000 0001224455443 66
Q ss_pred EEEEEe------------CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 88 LLVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 88 ~l~~~~------------~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
.++++. .++.|.+||+.+++....+.. ...+.+++|+|+|++++++ ++.|.+||+.+++.+..+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeee
Confidence 677775 578999999999887766542 3567889999999988888 688999999999988777
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC---C-----------------------eEEEEECCCCcee-eEeecCCCCeEEEEEe
Q 006808 156 RASTKGISCMAVSSDGKMLATAA---G-----------------------QLKTFNCSDHKKM-QKFSGHPGAVRFMTFS 208 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~---g-----------------------~i~lwd~~~~~~~-~~~~~h~~~v~~l~~s 208 (630)
..+... ..+.|+|++..++.++ + .|.+||+.+++.. ..+..+...+.+++|+
T Consensus 171 ~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s 249 (337)
T 1pby_B 171 PIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp CSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred eccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEEC
Confidence 654411 1237899988766544 2 4789999998764 2344566778899999
Q ss_pred eCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
|++++++++ ++.|.+||+.+++.. ..... .. ....+.|+ |+|++|++++.++.|++||+.+++.+.
T Consensus 250 ~dg~~l~~~---~~~v~~~d~~~~~~~---~~~~~--~~-~~~~~~~s-----~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 250 PAKTRAFGA---YNVLESFDLEKNASI---KRVPL--PH-SYYSVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp TTSSEEEEE---ESEEEEEETTTTEEE---EEEEC--SS-CCCEEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred CCCCEEEEe---CCeEEEEECCCCcCc---ceecC--CC-ceeeEEEC-----CCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 999998876 579999999887643 22222 22 23345565 999999999999999999999887654
Q ss_pred cc
Q 006808 289 NT 290 (630)
Q Consensus 289 ~~ 290 (630)
..
T Consensus 316 ~~ 317 (337)
T 1pby_B 316 QV 317 (337)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=4.2e-17 Score=165.89 Aligned_cols=239 Identities=15% Similarity=0.138 Sum_probs=156.5
Q ss_pred EeEECCCCCEEEEeeCC----CcEEEEECCC--CcEEE--EecccccccccccccccccccccccceeeEEecccccccc
Q 006808 10 LTSFSPALDYFAICSGD----ARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 10 ~~~fs~dg~~las~s~d----g~i~vwd~~~--~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++|+|||++|++++.+ +.|.+|++.. |.... ....+ ......+++ +
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~------------------~~~p~~~~~---d---- 108 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM------------------GADPCYLTT---N---- 108 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS------------------SSCEEEEEE---C----
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC------------------CCCcEEEEE---C----
Confidence 34999999999998875 7999998765 44322 11111 112233343 2
Q ss_pred cccCCcEEEEEe-CCCeEEEEEccCCeeeEEcc-------------CCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeC
Q 006808 82 RKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLS-------------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDP 146 (630)
Q Consensus 82 ~~~~~~~l~~~~-~~g~v~iwd~~~~~~~~~~~-------------~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~ 146 (630)
+..+++++ .++.|.+|++.....+.... ..+...+.+++|+|+|+++++++ .++.|.+|++
T Consensus 109 ----g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 109 ----GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp ----SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ----CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 55566665 57889999997543321110 11233468899999999776655 5889999988
Q ss_pred CCCce------e------EE-eecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce--eeEee---cCCCCeEEE
Q 006808 147 LTGSL------L------GK-FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFS---GHPGAVRFM 205 (630)
Q Consensus 147 ~~~~~------~------~~-~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~--~~~~~---~h~~~v~~l 205 (630)
..... + .. .......+.+++|+|+|+++++++ +.|.+|++.+++. +..+. .+......+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i 264 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI 264 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence 75431 1 12 222345678999999999877665 7999999987754 23332 233457899
Q ss_pred EEeeCCcEEEEEeeC-CCeEEEEEcC--CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEE-
Q 006808 206 TFSDNGKYVLSSAVG-ERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWY- 280 (630)
Q Consensus 206 ~~sp~~~~l~~~~~~-d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd- 280 (630)
+|+|+|++|+++... ++.|.+|++. +++.. .+..... ......+.|+ |+|++|++++ .++.|.+|.
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~---~~~~~~~-g~~~~~~~~s-----pdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLT---KVGYQLT-GIHPRNFIIT-----PNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEE---EEEEEEC-SSCCCEEEEC-----TTSCEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE---EeeEecC-CCCCceEEEC-----CCCCEEEEEECCCCCEEEEEE
Confidence 999999999887755 5899999996 33321 1222222 2334455666 9999998887 578999965
Q ss_pred -cCCccc
Q 006808 281 -GQNIEE 286 (630)
Q Consensus 281 -~~~~~~ 286 (630)
..+++.
T Consensus 336 d~~~g~~ 342 (361)
T 3scy_A 336 DQATGLL 342 (361)
T ss_dssp CTTTCCE
T ss_pred ECCCCcE
Confidence 445544
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=3.7e-18 Score=185.59 Aligned_cols=235 Identities=11% Similarity=0.030 Sum_probs=159.3
Q ss_pred cccceeEeEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.|| .+++|+|||++||+++. ||+++||++.++.... +..+. ...+..+.|.|
T Consensus 22 ~~~--~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~-----------------~~~~~~~~~sp------- 74 (582)
T 3o4h_A 22 VEK--YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREP-----------------INSVLDPHYGV------- 74 (582)
T ss_dssp SCE--EEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSC-----------------CSEECEECTTC-------
T ss_pred cch--heeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eeccc-----------------ccccccccCCC-------
Confidence 467 55699999999999887 9999999986665443 33222 12334455553
Q ss_pred ccCCcEEEEEeC---CCeEEEEEccC---CeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEe
Q 006808 83 KLGSSLLVLGTG---GGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 83 ~~~~~~l~~~~~---~g~v~iwd~~~---~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
..+++++.. +....+|.+.. +... .+.. ...+...+|+|+|+. +++++.++.+.+||+.+++.....
T Consensus 75 ---d~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~ 148 (582)
T 3o4h_A 75 ---GRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA 148 (582)
T ss_dssp ---SEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred ---CeEEEEeccCCCCcceEEEEEeccCCCccc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee
Confidence 234565554 34455655433 2222 3332 224556788888864 344444455669999988766555
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEE
Q 006808 156 RASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALW 227 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vw 227 (630)
..+. .+++|+|||++|++++ +.|++||+.+++.. .+..|...+..++|+|||++|+++. .++ .|++|
T Consensus 149 ~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~~ 223 (582)
T 3o4h_A 149 RLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLVTV 223 (582)
T ss_dssp EESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEEE
T ss_pred cCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEEEE
Confidence 4333 7899999999999765 37999999888754 6778888999999999999999655 677 89999
Q ss_pred EcCCCccccceeeeeecCCceeeee-------EEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 228 RTDGVKKQSASCVLAMEHPAVFMDC-------RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
|+.+++.. ....+...+... .+|+ |||..+++++.+|.+++|++ ++.+.
T Consensus 224 d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 224 DPRDGSVE-----DLELPSKDFSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp CTTTCCEE-----ECCCSCSHHHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred cCCCCcEE-----EccCCCcChhhhhhccccceeEc-----CCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 99887532 111222221111 1255 99988899999999999999 65544
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=5.3e-18 Score=189.42 Aligned_cols=239 Identities=12% Similarity=0.050 Sum_probs=163.8
Q ss_pred eEeEECCCCCEEEEeeCC---------CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 9 ILTSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.+++|||||++||+++.+ +.|.+||+.+++. ..+...... ...+..+.|.|.
T Consensus 64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~---------------~~~~~~~~~SPd--- 124 (723)
T 1xfd_A 64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS---------------NAKLQYAGWGPK--- 124 (723)
T ss_dssp SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC---------------SCCCSBCCBCSS---
T ss_pred ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc---------------cccccccEECCC---
Confidence 455999999999999864 7788999998876 333321110 011223344443
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC------------------EEEEEEecCCCEEEEEeCCC--
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------------------VSAISFATHGSCIYSAGADG-- 139 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~------------------v~~~~~s~~g~~l~s~~~dg-- 139 (630)
++.|+.++. +.|++||+.+++...... .+... +.+++|+|||++|++++.++
T Consensus 125 ------G~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~ 196 (723)
T 1xfd_A 125 ------GQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR 196 (723)
T ss_dssp ------TTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred ------CCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCc
Confidence 667777776 799999999887754333 33332 37899999999999887543
Q ss_pred --------------------------------cEEEEeCCCCceeEEeecC------CCCeEEEEEccCCCEEEEeC---
Q 006808 140 --------------------------------MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDGKMLATAA--- 178 (630)
Q Consensus 140 --------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~~~~l~~~~--- 178 (630)
.|++||+.+++....+..+ ...+.+++|+|||+++++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 276 (723)
T 1xfd_A 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA 276 (723)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC
Confidence 7999999988866666654 45789999999999887653
Q ss_pred ---CeEEEEECCCCceeeEeec-CCCCe----EEEEEeeCCcEEEEE-eeCCC------eEEEEE-cCCCcc--ccceee
Q 006808 179 ---GQLKTFNCSDHKKMQKFSG-HPGAV----RFMTFSDNGKYVLSS-AVGER------YIALWR-TDGVKK--QSASCV 240 (630)
Q Consensus 179 ---g~i~lwd~~~~~~~~~~~~-h~~~v----~~l~~sp~~~~l~~~-~~~d~------~i~vwd-~~~~~~--~~~~~~ 240 (630)
..|++||+.+++....+.. +...+ ..++|+|+|+.|+.. +..++ .|++|| ...+.. . ..
T Consensus 277 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~~ 353 (723)
T 1xfd_A 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI---QS 353 (723)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC---CB
T ss_pred CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce---eE
Confidence 4799999999987666543 33444 378999999987765 44566 566677 333330 1 11
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecC---CcEEEEEcCC
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQN 283 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~ 283 (630)
+. .+.........|+ |+|++|+..+.+ +.++||++..
T Consensus 354 l~-~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 354 IT-SGDWDVTKILAYD-----EKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SC-CSSSCEEEEEEEE-----TTTTEEEEEESSSCTTCCEEEEECS
T ss_pred ee-cCCeEEEeeeEEc-----CCCCEEEEEEcCCCCcceEEEEEeC
Confidence 11 1223333445666 999999876655 7899999764
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=1e-17 Score=186.64 Aligned_cols=254 Identities=13% Similarity=0.098 Sum_probs=173.4
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCC-----CcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
+.+. +++|||||++||++ .++.|++|++.+ ++.......+...+. ........+ ...+.++.|.|.
T Consensus 121 ~~~~--~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~---~g~~~~~ee-~~~~~~~~~SpD-- 191 (706)
T 2z3z_A 121 EETA--SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV---YGQAVHQRE-FGIEKGTFWSPK-- 191 (706)
T ss_dssp TCCT--TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE---ESSCCGGGC-TTCCCSEEECTT--
T ss_pred cccc--CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE---cccchhhhh-cCCCceEEECCC--
Confidence 3453 44999999999995 579999999988 776543332221110 000000000 112356677665
Q ss_pred ccccccCCcEEEEEe---------------------------------CCCeEEEEEccCCeeeEEcc-CCCCCCEEEEE
Q 006808 79 KKKRKLGSSLLVLGT---------------------------------GGGDVLALAVSAGQLKWRLS-DCHPGGVSAIS 124 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~---------------------------------~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~ 124 (630)
++.|++++ .++.|++||+.+++...... ..|...+.+++
T Consensus 192 -------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
T 2z3z_A 192 -------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS 264 (706)
T ss_dssp -------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred -------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence 66777776 34569999999988653332 24677899999
Q ss_pred EecCCCEEEEEeCCC-----cEEEEeCCCCceeEEee-c-CCC---CeEEEEEcc--CCCEEEEeC--CeEEEEECC-CC
Q 006808 125 FATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFR-A-STK---GISCMAVSS--DGKMLATAA--GQLKTFNCS-DH 189 (630)
Q Consensus 125 ~s~~g~~l~s~~~dg-----~v~iwd~~~~~~~~~~~-~-~~~---~v~~l~~~p--~~~~l~~~~--g~i~lwd~~-~~ 189 (630)
|+|+|++|++++.++ .|++||+.+++....+. . +.. .+.+++|+| +|+++++++ +.+++|.+. ++
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 999999999887775 89999999984443332 2 222 246789999 999888886 677777765 56
Q ss_pred ceeeEeecCCCCeEE-EEEeeCCcEEEEEeeCCC----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC
Q 006808 190 KKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (630)
Q Consensus 190 ~~~~~~~~h~~~v~~-l~~sp~~~~l~~~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (630)
..+..+..|...+.. ++|+|+++.|++++..++ .|+.|++.++... .+.+... +....|+ |+|
T Consensus 345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~l~~~~~-~~~~~~s-----pdg 412 (706)
T 2z3z_A 345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESG-MHRTQLS-----PDG 412 (706)
T ss_dssp CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE------ESCCSSS-EEEEEEC-----TTS
T ss_pred CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce------eccCCCc-eEEEEEC-----CCC
Confidence 677778888888877 799999998888775554 6777777765422 2223333 3456666 999
Q ss_pred CEEEEEecC----CcEEEEEcCCcc
Q 006808 265 LYVLAISET----GVCYIWYGQNIE 285 (630)
Q Consensus 265 ~~l~s~s~d----g~i~iwd~~~~~ 285 (630)
++|+..+.+ +.|++||..+++
T Consensus 413 ~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 413 SAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CEEEEEecCCCCCcEEEEEECCCCe
Confidence 988877554 469999998775
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=9.4e-17 Score=163.55 Aligned_cols=240 Identities=13% Similarity=0.159 Sum_probs=159.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECC-CCcEEEEeccc-ccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
..++|+|+|++|++++.+ .|.+|++. +|+........ .+.+..+.++|+ +
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd---------------------------g 94 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN---------------------------T 94 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC---------------------------C
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC---------------------------C
Confidence 456999999999998887 99999997 77765433211 012233344443 5
Q ss_pred cE--EEEEe-------------CCCeEEEEEcc-CCeeeEEcc---CCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeC
Q 006808 87 SL--LVLGT-------------GGGDVLALAVS-AGQLKWRLS---DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDP 146 (630)
Q Consensus 87 ~~--l~~~~-------------~~g~v~iwd~~-~~~~~~~~~---~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~ 146 (630)
+. ++++. .+|.+.+|++. .++....+. ..+...+.+++|+|+|+++++++ .++.|++||+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence 53 34442 68899999997 455432221 12456799999999999888775 3679999999
Q ss_pred C-CCcee--EEee--cCCCCeEEEEEccCCCEEEEeC---CeEEEEECC--CCcee---eEee-------cCCC------
Q 006808 147 L-TGSLL--GKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKKM---QKFS-------GHPG------ 200 (630)
Q Consensus 147 ~-~~~~~--~~~~--~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~--~~~~~---~~~~-------~h~~------ 200 (630)
. +++.. ..+. .+...+..++|+|+|+++++++ +.|.+|++. +++.. ..+. +|..
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 254 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL 254 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence 8 67653 3343 2356789999999999887765 789999765 45532 1221 1222
Q ss_pred CeEEEE-EeeCCcEEEEEeeCCC-----eEEEEEcC-CCccccceeee-eecCCceeeeeEEecCCccCC---CCCEEEE
Q 006808 201 AVRFMT-FSDNGKYVLSSAVGER-----YIALWRTD-GVKKQSASCVL-AMEHPAVFMDCRCIDNGGVDD---AGLYVLA 269 (630)
Q Consensus 201 ~v~~l~-~sp~~~~l~~~~~~d~-----~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~s 269 (630)
.+..++ |+|+|++|+++...+. .|.+|++. +++.. ... ...........+.++ | +|++|++
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---~~~~~~~~~~~~~~~~a~s-----p~~~dg~~l~v 326 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVS-----PCPWSDEWMAI 326 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEE-----ECTTCTTEEEE
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE---EeeeeeecCCCCcccceec-----CCCcCCCEEEE
Confidence 478999 9999999887764333 89999996 44321 111 121111122233444 7 8999999
Q ss_pred EecC-CcEEEEEcCCc
Q 006808 270 ISET-GVCYIWYGQNI 284 (630)
Q Consensus 270 ~s~d-g~i~iwd~~~~ 284 (630)
++.+ +.|.+|++...
T Consensus 327 ~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 327 TDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSSCEEEEEEEETT
T ss_pred EEcCCCeEEEEEEchh
Confidence 8874 89999998654
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=4.4e-17 Score=182.09 Aligned_cols=246 Identities=11% Similarity=0.016 Sum_probs=167.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|+|||++++++ ||+|++||+.++++...+.++....... ....+.|.|. ++.
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~Spd---------g~~ 75 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGH-------------SINDYSISPD---------GQF 75 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCS-------------CCCEEEECTT---------SSE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcc-------------cccceEECCC---------CCE
Confidence 456999999999986 8999999999999877776554322111 1112444443 677
Q ss_pred EEEEeCC---------CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecC
Q 006808 89 LVLGTGG---------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRAS 158 (630)
Q Consensus 89 l~~~~~~---------g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~ 158 (630)
|++++.+ +.+.+||+.+++.. .+ ..|...+..++|||||+.|+.+ .++.|++|++.+++..+. ..++
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~ 152 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK 152 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence 8887775 66789999999875 33 4577889999999999999888 468999999988875542 2222
Q ss_pred CCCe-----------------EEEEEccCCCEEEEeC---C-----------------------------------eEEE
Q 006808 159 TKGI-----------------SCMAVSSDGKMLATAA---G-----------------------------------QLKT 183 (630)
Q Consensus 159 ~~~v-----------------~~l~~~p~~~~l~~~~---g-----------------------------------~i~l 183 (630)
...+ ..+.|+|||+.|+.++ + +|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 2222 3589999999998863 1 5888
Q ss_pred EECCC---Cc--eeeEee------cCCCCeEEEEEeeCCcEEEEEeeC---CCeEEEEEcCCCc----cccceeeeeecC
Q 006808 184 FNCSD---HK--KMQKFS------GHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVK----KQSASCVLAMEH 245 (630)
Q Consensus 184 wd~~~---~~--~~~~~~------~h~~~v~~l~~sp~~~~l~~~~~~---d~~i~vwd~~~~~----~~~~~~~~~~~~ 245 (630)
||+.+ +. ....+. +|...+..++|+|||+.++..... +..|++||+.+++ ......+....+
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 99988 73 223333 377789999999999976655422 2379999998876 110111111223
Q ss_pred Cceee----eeEEecCCccCCCCCEEE-EEec-CC--cEEEEEcCCccc
Q 006808 246 PAVFM----DCRCIDNGGVDDAGLYVL-AISE-TG--VCYIWYGQNIEE 286 (630)
Q Consensus 246 ~~~~~----~~~~~~~~~~~~~~~~l~-s~s~-dg--~i~iwd~~~~~~ 286 (630)
...+. ....|+ |||+.|+ ..+. +| .|++|+..++..
T Consensus 313 ~~~v~~~~~~~p~fs-----pDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 313 TGWVGRFRPSEPHFT-----LDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp SSCSSSSSCCCCEEC-----TTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred CceEccCcCCCceEc-----CCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 32221 134455 9999877 6654 44 578888876654
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=4.6e-16 Score=158.16 Aligned_cols=236 Identities=14% Similarity=0.089 Sum_probs=148.8
Q ss_pred EECCCCCEEEEeeC----CCcEEEEEC--CCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 12 SFSPALDYFAICSG----DARIKIWDT--LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 12 ~fs~dg~~las~s~----dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
+..+...+++.|+. ++.|.+|.+ .+++.......+...+. .++|.+.
T Consensus 8 ~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~------------------~l~~spd--------- 60 (361)
T 3scy_A 8 STTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPS------------------YLIPSAD--------- 60 (361)
T ss_dssp CGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCC------------------SEEECTT---------
T ss_pred hhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCc------------------eEEECCC---------
Confidence 34455556777753 568999865 55654432221222222 3444433
Q ss_pred CcEEEEEeCC----CeEEEEEccC--Cee--eEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEEe-
Q 006808 86 SSLLVLGTGG----GDVLALAVSA--GQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKF- 155 (630)
Q Consensus 86 ~~~l~~~~~~----g~v~iwd~~~--~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~- 155 (630)
+++|++++.+ |.|.+|++.. +.. +... ..+...+..+++ +++++++++ .++.|.+|++.....+..+
T Consensus 61 g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 137 (361)
T 3scy_A 61 GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS 137 (361)
T ss_dssp SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS
T ss_pred CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc
Confidence 6778888875 7899998875 443 2222 224456778888 788877766 6889999999754332211
Q ss_pred ---e--c--------CCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce------e------eE-eecCCCCeEEEE
Q 006808 156 ---R--A--------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------M------QK-FSGHPGAVRFMT 206 (630)
Q Consensus 156 ---~--~--------~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~------~------~~-~~~h~~~v~~l~ 206 (630)
. + +...+.+++|+|+|+++++++ +.|++|++..... + .. ...+...+.+++
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 217 (361)
T 3scy_A 138 DVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLI 217 (361)
T ss_dssp EEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEE
T ss_pred eeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEE
Confidence 1 1 122358899999999776655 7999998875431 1 11 223445678999
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC--CcEEEEEcC
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET--GVCYIWYGQ 282 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~ 282 (630)
|+|+|+++++++..++.|.+|++.++....................+.|+ |+|++|++++.+ +.|.+|++.
T Consensus 218 ~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s-----pdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 218 FNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS-----PDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp ECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC-----TTSSEEEEEECSSSCEEEEEEEC
T ss_pred EcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC-----CCCCEEEEECCCCCCEEEEEEEc
Confidence 99999998888756899999999866432111111111111223456666 999999777664 899999985
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=2.8e-16 Score=161.32 Aligned_cols=306 Identities=11% Similarity=0.050 Sum_probs=190.6
Q ss_pred EEEECCCCcEEEEeccccccccc-----ccccccccccccccceeeEEecccccccccccCCcEEEEEeC-CC--eEEEE
Q 006808 30 KIWDTLKGQVQTEFADIASTETT-----SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG--DVLAL 101 (630)
Q Consensus 30 ~vwd~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g--~v~iw 101 (630)
..++..+|.....+..+...... ..|+|+ ++.|+.++. +| .|.+|
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpD---------------------------g~~l~~~~~~~g~~~l~~~ 65 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRD---------------------------GSKLLFGGAFDGPWNYYLL 65 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTT---------------------------SCEEEEEECTTSSCEEEEE
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCC---------------------------CCEEEEEEcCCCCceEEEE
Confidence 34577788887777655433322 334433 666777776 66 48899
Q ss_pred EccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEE--EccCCCEEEEe--
Q 006808 102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA--VSSDGKMLATA-- 177 (630)
Q Consensus 102 d~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~--~~p~~~~l~~~-- 177 (630)
|+.+++.. .+..++...+.++.|+|+|+.|+.++.++.|++||+.+++....+..+...+.... ++|++++++..
T Consensus 66 d~~~g~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 144 (388)
T 3pe7_A 66 DLNTQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEI 144 (388)
T ss_dssp ETTTCEEE-ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred eCCCCceE-EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccc
Confidence 99988876 44445655555778999999999999999999999999988777776665554444 48999988742
Q ss_pred --------------------C--CeEEEEECCCCceeeEeecCCCCeEEEEEee-CCcEEEEEeeC-----CCeEEEEEc
Q 006808 178 --------------------A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVG-----ERYIALWRT 229 (630)
Q Consensus 178 --------------------~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~-----d~~i~vwd~ 229 (630)
. +.|++||+.+++.. .+..+...+..+.|+| +|+.|+.++.. ...|.++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred cCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 1 57999999988644 4445677899999999 99988877632 237888887
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CC----cEEEEEcCCccc--ccccCceeEEe--ecc
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG----VCYIWYGQNIEE--LRNTKATKILS--SSE 300 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg----~i~iwd~~~~~~--~~~~~~~~~~~--~~~ 300 (630)
..+... .+ ........+....|+ |||+.|+..+. ++ .|++||+.+++. +.......... ...
T Consensus 224 ~~~~~~---~l-~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 224 DGTNMR---KV-KTHAEGESCTHEFWV-----PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp TSCCCE---ES-CCCCTTEEEEEEEEC-----TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred CCCceE---Ee-eeCCCCcccccceEC-----CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 765422 11 111222334445566 99998766544 22 399999988863 22222111111 111
Q ss_pred CCCcccccchhhhhhhcccccc--ccCCceeEEEEEcCccCceeeEEeccCC-----------CcEEEeecCCcceeecc
Q 006808 301 DVNSKSQKSATAAIFAAKLQDI--VKPASVHTFVAYGLLLKPSFQKILVNSG-----------EDINLNCSQDGVLLPMS 367 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~--~~~~~~~~~~~~g~~~~~~~~~~~~h~~-----------~v~~~~~s~dg~~l~~s 367 (630)
..++|+++ .|+....++. ....+..+.+..- .......+..|.. .+.+++|||||+.|+++
T Consensus 295 ~~~spdg~----~l~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~ 368 (388)
T 3pe7_A 295 SLMVGDGS----DAPVDVQDDSGYKIENDPFLYVFNM--KNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT 368 (388)
T ss_dssp SEEEEEEC----CC------------CCCCEEEEEET--TTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred CeEccCCC----cceeEeeeccccccCCCCEEEEEec--cCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence 23677777 5554332110 0001223333321 1123345666665 57889999999988455
Q ss_pred ccceecccccee
Q 006808 368 QSLLKSKRGRYV 379 (630)
Q Consensus 368 ~s~d~~~~~w~~ 379 (630)
+..++...+|.+
T Consensus 369 s~~~g~~~l~~~ 380 (388)
T 3pe7_A 369 SDVHGKPALYLA 380 (388)
T ss_dssp ECTTSSCEEEEE
T ss_pred ecCCCceeEEEE
Confidence 555666666654
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.76 E-value=7.7e-17 Score=167.64 Aligned_cols=199 Identities=11% Similarity=0.053 Sum_probs=141.7
Q ss_pred cccceeEeEECCCCCEEE----EeeCCCcEEEEECCCC--------cEEEEecccccccccccccccccccccccceeeE
Q 006808 4 SNIRDILTSFSPALDYFA----ICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~la----s~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (630)
++| .+++|+|+|++|| +|+.|++|+|||+.++ +.+..+.. ..+| ...+.++
T Consensus 93 ~~v--~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~--------------~~~h-~~~V~~v 155 (434)
T 2oit_A 93 FPI--HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL--------------LKDA-GGMVIDM 155 (434)
T ss_dssp SCE--EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC--------------CCSG-GGSEEEE
T ss_pred Ccc--cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec--------------cCCC-CCceEEE
Confidence 357 5669999999999 7888999999998754 11111110 1133 2367788
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~ 151 (630)
+|+|.. +.+|++++.||.|++||+.++...... .+|...|++++|+|+|++|++|+.||+|++||++ ++.
T Consensus 156 ~~~p~~--------~~~las~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~ 225 (434)
T 2oit_A 156 KWNPTV--------PSMVAVCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE 225 (434)
T ss_dssp EECSSC--------TTEEEEEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred EECCCC--------CCEEEEEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence 888764 678999999999999999998765444 3588899999999999999999999999999998 666
Q ss_pred eEEeecCC-------CCeEEEEEccCCCEEEEeC---C------eEEEEECCCCce-----eeEee-------cCCCCeE
Q 006808 152 LGKFRAST-------KGISCMAVSSDGKMLATAA---G------QLKTFNCSDHKK-----MQKFS-------GHPGAVR 203 (630)
Q Consensus 152 ~~~~~~~~-------~~v~~l~~~p~~~~l~~~~---g------~i~lwd~~~~~~-----~~~~~-------~h~~~v~ 203 (630)
...+..+. ..|.+++|++++.++++.+ | .+++|++.+... ...+. +...+..
T Consensus 226 ~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 305 (434)
T 2oit_A 226 KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHY 305 (434)
T ss_dssp EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCE
T ss_pred cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcce
Confidence 66655432 2789999999988876543 2 399999986521 11111 1222323
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
.+.+-++.++++++++....|.++..
T Consensus 306 ~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 306 YLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred eeehhccCCEEEEecCCCCceeEEEe
Confidence 34444777777777655555666554
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=3e-16 Score=158.42 Aligned_cols=257 Identities=13% Similarity=0.076 Sum_probs=164.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCC-----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRAST----- 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~----- 159 (630)
+.++++++.++.|.+||+.+++.+..+..+....+..++|+|+|++++ ++..++.|.+||+.+++.+..+....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 677889999999999999999887666533333678999999998765 55578999999999998887776433
Q ss_pred -CCeEEEEEccCCCEEEEeC--------------CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 160 -KGISCMAVSSDGKMLATAA--------------GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 160 -~~v~~l~~~p~~~~l~~~~--------------g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
..+.+++|+|+|+++++++ +.|.+||+.+++. +..+. +...+.+++|+|+|+ +++++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--- 165 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--- 165 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES---
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc---
Confidence 2378899999999998876 7999999988543 33444 344688999999999 55543
Q ss_pred CeEEEEEcCCCccccceeeeeecCC--------------------ce--eeeeEEecCCccCCCC-----------CEEE
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHP--------------------AV--FMDCRCIDNGGVDDAG-----------LYVL 268 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~--------------------~~--~~~~~~~~~~~~~~~~-----------~~l~ 268 (630)
+.|.+||+.+++.. ........ .. ......+. +++ .++.
T Consensus 166 ~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 166 PDIYKMDVKTGKYT---VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-----KDDKQDPATADLLYGYLS 237 (349)
T ss_dssp SSEEEECTTTCCEE---EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------------CCCEEEEEEEE
T ss_pred CcEEEEeCCCCcee---ccccccccCCccccCccceeeecCCCcceeEEeeeeeeec-----CCCcCCccccccceeEEE
Confidence 24999999887643 11111110 00 11112221 221 1222
Q ss_pred EEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc-cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEec
Q 006808 269 AISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK-SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347 (630)
Q Consensus 269 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~ 347 (630)
....++.+.+|+.... ......+. ++| +++ .++++ ++.+..++ .........+.
T Consensus 238 ~~~~~~~~~~~~~~~~------~~~~~~~~----~sp~dg~----~l~~~--~~~v~~~d--------~~~~~~~~~~~- 292 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADL------TELYFTGL----RSPKDPN----QIYGV--LNRLAKYD--------LKQRKLIKAAN- 292 (349)
T ss_dssp EETTTCCEEEEEEEEC------SSCEEEEE----ECSSCTT----EEEEE--ESEEEEEE--------TTTTEEEEEEE-
T ss_pred EeccCCcEEecccccC------CCcceeeE----ecCCCCC----EEEEE--cCeEEEEE--------CccCeEEEEEc-
Confidence 3344677777776321 11111122 456 655 55555 33322221 11222222332
Q ss_pred cCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 348 h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
....+.+++|+|||.+| ++++.++.+++|+...
T Consensus 293 ~~~~~~~~~~s~dg~~l-~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 293 LDHTYYCVAFDKKGDKL-YLGGTFNDLAVFNPDT 325 (349)
T ss_dssp CSSCCCEEEECSSSSCE-EEESBSSEEEEEETTT
T ss_pred CCCCccceEECCCCCEE-EEecCCCeEEEEeccc
Confidence 23346789999999988 5567789999999864
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.72 E-value=1.4e-15 Score=154.89 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=129.3
Q ss_pred CcEEEEEeCCCeEEEEEcc-CCeeeEEccCCCCCCEEEEEEecCCCE--EEEEe-------------CCCcEEEEeCC-C
Q 006808 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSC--IYSAG-------------ADGMVCEIDPL-T 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~-~~~~~~~~~~~h~~~v~~~~~s~~g~~--l~s~~-------------~dg~v~iwd~~-~ 148 (630)
+.+|++++.+ .|.+|++. +++..........+.+.+++|+|+|++ +++++ .++.+.+|++. .
T Consensus 51 g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~ 129 (365)
T 1jof_A 51 RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET 129 (365)
T ss_dssp SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence 6778888877 99999997 776543221101123566899999994 44553 68999999997 4
Q ss_pred CceeEEee----cCCCCeEEEEEccCCCEEEEeC---CeEEEEECC-CCcee--eEee--cCCCCeEEEEEeeCCcEEEE
Q 006808 149 GSLLGKFR----ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKM--QKFS--GHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 149 ~~~~~~~~----~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~-~~~~~--~~~~--~h~~~v~~l~~sp~~~~l~~ 216 (630)
++....+. .+...+.+++|+|+|+++++++ +.|++|++. +++.. ..+. .|...+..++|+|+|+++++
T Consensus 130 g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 130 GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence 66554443 2455789999999999888764 699999998 67643 3333 24567899999999999988
Q ss_pred EeeCCCeEEEEEcCC--Ccccc-ceeeeeecCC--c-e-------eeeeEE-ecCCccCCCCCEEEEEecCC------cE
Q 006808 217 SAVGERYIALWRTDG--VKKQS-ASCVLAMEHP--A-V-------FMDCRC-IDNGGVDDAGLYVLAISETG------VC 276 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~--~~~~~-~~~~~~~~~~--~-~-------~~~~~~-~~~~~~~~~~~~l~s~s~dg------~i 276 (630)
++..++.|.+|++.. ++... ...+..+... . . ....+. ++ |||++|++++.+. .|
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-----pdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC-----CCCCEEEEECCCCCCCCCCeE
Confidence 875578999998763 33210 0011111111 1 1 244555 76 9999988776532 79
Q ss_pred EEEEcC
Q 006808 277 YIWYGQ 282 (630)
Q Consensus 277 ~iwd~~ 282 (630)
.+|++.
T Consensus 285 ~v~~~~ 290 (365)
T 1jof_A 285 AGFKLR 290 (365)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999985
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=1.3e-14 Score=142.29 Aligned_cols=241 Identities=15% Similarity=0.190 Sum_probs=164.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++++|+|+++++.+.++.|.+||.. +..+..+...... .++. .....+++.+.+ +.+
T Consensus 33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~-----------~~~~-~~p~~i~~~~~~--------g~l 91 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----------DSQL-LYPNRVAVVRNS--------GDI 91 (286)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----------TTCB-SSEEEEEEETTT--------TEE
T ss_pred ceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC-----------cccc-cCceEEEEEcCC--------CeE
Confidence 455999999988888889999999986 6666555321100 0111 123455553222 444
Q ss_pred EEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee--cCCCCeEEE
Q 006808 89 LVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCM 165 (630)
Q Consensus 89 l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l 165 (630)
+++... ++.|.+|+ .+++.+..+...+...+.+++++|+|+.+++...++.|.+||. .++.+..+. .+...+.++
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEE
Confidence 444433 78899999 5566665554445567999999999998777778899999995 466666664 234568999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCC-eEEEEEcCCCccccceee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCV 240 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~-~i~vwd~~~~~~~~~~~~ 240 (630)
+++|+|+++++.. +.|++||. +++.+..+..+ ...+..++++|+|+.+++.. .++ .|.+|+..... . ..
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~g~~-~---~~ 243 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQDGQL-I---SA 243 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTTSCE-E---EE
T ss_pred EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCCCCE-E---EE
Confidence 9999998777765 79999997 55566666533 35789999999998777665 465 99999964332 1 12
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+...........+++. |+|.++++ +.++.|++|+....
T Consensus 244 ~~~~~~~~~~~~i~~~-----~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 244 LESKVKHAQCFDVALM-----DDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEESSCCSCEEEEEEE-----TTTEEEEE-ETTTEEEEEECSCC
T ss_pred EcccCCCCcceeEEEC-----CCCcEEEE-CCCCeEEEEEcccc
Confidence 2222222223445565 88887666 67899999997554
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=7e-16 Score=158.37 Aligned_cols=238 Identities=9% Similarity=0.038 Sum_probs=158.9
Q ss_pred eEECCCCCEEEEeeC-CCc--EEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 11 TSFSPALDYFAICSG-DAR--IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 11 ~~fs~dg~~las~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.+|||||++||+++. +|. |.+||+.+++......++........|+|+ +.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd---------------------------g~ 93 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD---------------------------DD 93 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT---------------------------SS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC---------------------------CC
Confidence 489999999999987 664 888899988876654433332223334443 77
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEE--EecCCCEEEEE----------------------eCCCcEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS--FATHGSCIYSA----------------------GADGMVCE 143 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~--~s~~g~~l~s~----------------------~~dg~v~i 143 (630)
.|+.++.++.|++||+.+++..... ..+...+.... ++|++..++.. +.+..|.+
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 8999999999999999998865333 23444454444 48999987743 23468999
Q ss_pred EeCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEeC-C-------eEEEEECCCCceeeEeecCC--CCeEEEEEeeCCc
Q 006808 144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA-G-------QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGK 212 (630)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~-g-------~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~ 212 (630)
||+.+++.... ..+...+..++|+| +|+.|+.+. + .|.++|+..+.. ..+..+. ..+..+.|+|+|+
T Consensus 173 ~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 173 VDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS
T ss_pred EECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC
Confidence 99998875444 44566789999999 999887765 2 688888766543 3444444 3578899999999
Q ss_pred EEEEEeeCCC----eEEEEEcCCCccccceeeeeecCCcee---eeeEEecCCccCCCCCEEEEE---------ecCCcE
Q 006808 213 YVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAI---------SETGVC 276 (630)
Q Consensus 213 ~l~~~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~---------s~dg~i 276 (630)
.|+..+..++ .|++||+.+++.. .+......... .....|+ |||++|+.. ..+..|
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENR---QLTSMPACSHLMSNYDGSLMV-----GDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEE---EEEEECCEEEEEECTTSSEEE-----EEECCC------------CCCCEE
T ss_pred EEEEEecCCCCCcceEEEEecCCCceE---EEEcCCCceeeeecCCCCeEc-----cCCCcceeEeeeccccccCCCCEE
Confidence 8866553322 3999999987643 22222210000 1111344 899888754 445689
Q ss_pred EEEEcCCccc
Q 006808 277 YIWYGQNIEE 286 (630)
Q Consensus 277 ~iwd~~~~~~ 286 (630)
++||+.+++.
T Consensus 323 ~~~d~~~~~~ 332 (388)
T 3pe7_A 323 YVFNMKNGTQ 332 (388)
T ss_dssp EEEETTTTEE
T ss_pred EEEeccCCce
Confidence 9999987654
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=174.95 Aligned_cols=282 Identities=13% Similarity=0.060 Sum_probs=177.6
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCC---CEEEEEEecCCCEEEEEeC---------
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAGA--------- 137 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~l~s~~~--------- 137 (630)
.+.|.+. +. ++..+.+|.|++||+.+++....+ .+|.. .+.+++|||||++|++++.
T Consensus 20 ~~~~s~d---------g~-~~~~~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 20 FPNWISG---------QE-YLHQSADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCEESSS---------SE-EEEECTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccEECCC---------Ce-EEEEcCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 4566664 43 455567999999999999876433 33332 4899999999999988876
Q ss_pred CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEe-ecCCCCe-------------
Q 006808 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAV------------- 202 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v------------- 202 (630)
++.|++||+.+++.+.... ....+..++|+|||+.|+++. +.|++|++.+++..... .++...|
T Consensus 89 ~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred ceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 7899999999887631111 124688999999999999888 89999999888764322 2332222
Q ss_pred ----EEEEEeeCCcEEEEEeeCCC---------------------------------eEEEEEcCCCccccceee---ee
Q 006808 203 ----RFMTFSDNGKYVLSSAVGER---------------------------------YIALWRTDGVKKQSASCV---LA 242 (630)
Q Consensus 203 ----~~l~~sp~~~~l~~~~~~d~---------------------------------~i~vwd~~~~~~~~~~~~---~~ 242 (630)
.+++|||||++|++++..++ .|++||+.+++......+ ..
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 48999999999999874221 788999988753100000 11
Q ss_pred ecCCceeeeeEEecCCccCCCCCEEEEEecCC----cEEEEE----cCCcccccccC----ceeEEee----ccCCCccc
Q 006808 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETG----VCYIWY----GQNIEELRNTK----ATKILSS----SEDVNSKS 306 (630)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg----~i~iwd----~~~~~~~~~~~----~~~~~~~----~~~~~~~~ 306 (630)
+..+...+....|+ ||++++++....+ .|.+|| ..+++...... .....+. ....|+|+
T Consensus 248 ~~~~~~~~~~~~~S-----pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 248 IASSDYYFSWLTWV-----TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp HHTSCEEEEEEEES-----SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCCCcceEEEeEEe-----CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 12234455566676 9987777654332 488899 77776543321 1111011 02236777
Q ss_pred ccchhhhhhh--ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccc----eeccccceec
Q 006808 307 QKSATAAIFA--AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL----LKSKRGRYVQ 380 (630)
Q Consensus 307 ~~~~~~~i~~--~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~----d~~~~~w~~~ 380 (630)
++ .++. +..++ ..+++... . .......+..+...+..+.++ ||..|.+++.. ++..++|.+.
T Consensus 323 g~----~l~~~~~~~~g-----~~~l~~~~-~-~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 323 AI----SYYKIFSDKDG-----YKHIHYIK-D-TVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp SS----CEEEEEECTTS-----CEEEEEES-S-CSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CC----eEEEEEEccCC-----ceEEEEEE-C-CCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 76 4443 22333 22333322 1 111134555566677888888 88777455554 4778888764
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=1.3e-14 Score=145.21 Aligned_cols=242 Identities=9% Similarity=0.076 Sum_probs=166.6
Q ss_pred cccceeEeEECCCCCEEEEeeCC------------------------CcEEEEECCCCcEEEEecccccccccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGD------------------------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRL 59 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~ 59 (630)
+.| ..++|+|+|+++++.+.+ ++|.+||..+++.+..+...
T Consensus 24 ~~v--~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------- 88 (329)
T 3fvz_A 24 GQV--SGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN------------- 88 (329)
T ss_dssp SCE--EEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-------------
T ss_pred CCc--eEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-------------
Confidence 356 445999999999888777 47999999889887654311
Q ss_pred cccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe-eeEEcc--------CCCCCCEEEEEEec-CC
Q 006808 60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLS--------DCHPGGVSAISFAT-HG 129 (630)
Q Consensus 60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~-~~~~~~--------~~h~~~v~~~~~s~-~g 129 (630)
+ -.....+++.+. +.++++...++.|++|+..... .+..+. .++-..+.+++|+| +|
T Consensus 89 ---~-~~~p~gia~d~~---------g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 89 ---L-FYLPHGLSIDTD---------GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp ---T-CSSEEEEEECTT---------SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred ---c-cCCceEEEECCC---------CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence 1 012234444432 6677777788999999986552 333332 24455799999999 78
Q ss_pred CEEEEEe-CCCcEEEEeCCCCceeEEeecCC----------CCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEe
Q 006808 130 SCIYSAG-ADGMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF 195 (630)
Q Consensus 130 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~ 195 (630)
..+++.+ .++.|++|| .+++.+..+.... .....++++|+ +.++++.. +.|++|+..+++.+..+
T Consensus 156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 8777776 689999999 5677777764322 23789999998 66555554 79999999889888887
Q ss_pred e--cCCCCeEEEEEeeCCcEEEEEe------eCCCeEEEEEcCCCccccceeeee-ecCCceeeeeEEecCCccCCCCCE
Q 006808 196 S--GHPGAVRFMTFSDNGKYVLSSA------VGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLY 266 (630)
Q Consensus 196 ~--~h~~~v~~l~~sp~~~~l~~~~------~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 266 (630)
. .+...+.+++|+| +..+.+.+ ..+..|++|+..+++.. ..+. ..........++++ |+|..
T Consensus 235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~---~~~~~~~~~~~~p~~ia~~-----~dG~l 305 (329)
T 3fvz_A 235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII---DVFKPVRKHFDMPHDIVAS-----EDGTV 305 (329)
T ss_dssp CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE---EEECCSSSCCSSEEEEEEC-----TTSEE
T ss_pred eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE---EEEcCCCCccCCeeEEEEC-----CCCCE
Confidence 4 4566788999999 43333322 12458999999887643 1111 01222234455666 89988
Q ss_pred EEEEecCCcEEEEEcCC
Q 006808 267 VLAISETGVCYIWYGQN 283 (630)
Q Consensus 267 l~s~s~dg~i~iwd~~~ 283 (630)
+++...++.|++|++..
T Consensus 306 yvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEESSSCCEEEEEEEE
T ss_pred EEEECCCCEEEEEeCCc
Confidence 88888899999999753
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=1.1e-15 Score=157.12 Aligned_cols=233 Identities=9% Similarity=0.003 Sum_probs=151.7
Q ss_pred EeEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 10 LTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 10 ~~~fs~dg~~las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
.++|||||++||.++.. ..|.+||+.+++......+.. .. .....|.|. +
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~-~~-----------------~~~~~~spd---------g 92 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG-DN-----------------TFGGFISTD---------E 92 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC-BC-----------------TTTCEECTT---------S
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC-Cc-----------------cccceECCC---------C
Confidence 34899999998877643 468888998887544322111 11 111334433 7
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEE-------------------EEEecCCCEEEEE-----eCCCcEE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-------------------ISFATHGSCIYSA-----GADGMVC 142 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~-------------------~~~s~~g~~l~s~-----~~dg~v~ 142 (630)
+.|+.++.++.|++||+.+++..... ..+...... +.|+|+++.++.+ ..+..|+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 78889999999999999988764332 223332222 3456677665543 3566899
Q ss_pred EEeCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEeC--------CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCC
Q 006808 143 EIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--------GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNG 211 (630)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~--------g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~ 211 (630)
+||+.+++..... .+...+..+.|+| ++..|+.++ ..|++||+..++.. .+..+ ...+..+.|+|+|
T Consensus 172 ~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 172 KVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDG 249 (396)
T ss_dssp EEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTS
T ss_pred EEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCC
Confidence 9999988765554 3566789999999 788776654 26888998765433 33323 2357889999999
Q ss_pred cEEEEEeeCC----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC-CCCEEEEEe---------------
Q 006808 212 KYVLSSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS--------------- 271 (630)
Q Consensus 212 ~~l~~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s--------------- 271 (630)
++|+.++..+ +.|++||+.+++.. .+... +.. . ..|+ | +|+++++++
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~--~~~--~-~~~s-----~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENE---EVMVM--PPC--S-HLMS-----NFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEE---EEEEC--CSE--E-EEEE-----CSSSSEEEEEECCC----------CC
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeE---EeeeC--CCC--C-CCcc-----CCCCceEEEecCCcceeecccccccc
Confidence 9887775322 45999999877533 22221 121 2 4455 7 999888765
Q ss_pred -cCCcEEEEEcCCcc
Q 006808 272 -ETGVCYIWYGQNIE 285 (630)
Q Consensus 272 -~dg~i~iwd~~~~~ 285 (630)
.++.|++||+.+++
T Consensus 317 ~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKS 331 (396)
T ss_dssp CCCCEEEEEETTTTB
T ss_pred CCCCcEEEEecccCc
Confidence 24679999987664
No 168
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.68 E-value=8e-16 Score=167.12 Aligned_cols=265 Identities=10% Similarity=-0.010 Sum_probs=170.6
Q ss_pred cceeeEEecccccccccccCCcEEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMV 141 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v 141 (630)
..+.++.+.+. ++.|++++. +|++.||++.+++.. .+...+...+.+++|+|+ +.+++++. +...
T Consensus 22 ~~~~~~~~~~D---------G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 22 VEKYSLQGVVD---------GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp SCEEEEEEEET---------TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred cchheeecCCC---------CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 34556666554 677887776 999999999777654 454434468999999999 77777765 4545
Q ss_pred EEEeCCC---CceeEEeecCCCCeEEEEEccCCCE--EEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEE
Q 006808 142 CEIDPLT---GSLLGKFRASTKGISCMAVSSDGKM--LATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 142 ~iwd~~~---~~~~~~~~~~~~~v~~l~~~p~~~~--l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
.+|.+.. +... .+... ..+...+|+|+|+. +++++ +.+.+||+.+++...... +.. .+++|+|||++++
T Consensus 91 ~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la 165 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIA 165 (582)
T ss_dssp EEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEE
T ss_pred EEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEE
Confidence 6654432 3222 33322 23456788888864 44444 667799999887654444 333 7899999999999
Q ss_pred EEeeCC----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC--cEEEEEcCCcccccc
Q 006808 216 SSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRN 289 (630)
Q Consensus 216 ~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~ 289 (630)
+++. + +.|++||+.+++.. .+...........|+ |||++|+++..+| .|++||+.+++.. .
T Consensus 166 ~~~~-~~~~~~~i~~~d~~~g~~~------~l~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 166 GLGF-FGGGRVSLFTSNLSSGGLR------VFDSGEGSFSSASIS-----PGMKVTAGLETAREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp EEEE-EETTEEEEEEEETTTCCCE------EECCSSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred EEEE-cCCCCeEEEEEcCCCCCce------EeecCCCccccceEC-----CCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence 8774 5 67999999887633 222333344566676 9999999888888 8999999887654 2
Q ss_pred cCceeEEeeccCC--------CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCc
Q 006808 290 TKATKILSSSEDV--------NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (630)
Q Consensus 290 ~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (630)
.......+. ... ++|++. .+++++.++.++++. . |.. .. .+.+.+.+++|+ ||
T Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~spdg~----~~~~~~~~g~~~l~~-----~-g~~----~~---~~~~~v~~~~~s-dg 293 (582)
T 3o4h_A 233 LELPSKDFS-SYRPTAITWLGYLPDGR----LAVVARREGRSAVFI-----D-GER----VE---APQGNHGRVVLW-RG 293 (582)
T ss_dssp CCCSCSHHH-HHCCSEEEEEEECTTSC----EEEEEEETTEEEEEE-----T-TEE----EC---CCSSEEEEEEEE-TT
T ss_pred ccCCCcChh-hhhhccccceeEcCCCc----EEEEEEcCCcEEEEE-----E-CCe----ec---cCCCceEEEEec-CC
Confidence 211111111 112 567764 677777776544432 2 211 11 344668899999 99
Q ss_pred ceeeccccceec---ccccee
Q 006808 362 VLLPMSQSLLKS---KRGRYV 379 (630)
Q Consensus 362 ~~l~~s~s~d~~---~~~w~~ 379 (630)
+++ ++++.+.+ +.+|+.
T Consensus 294 ~~l-~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 294 KLV-TSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEE-EEEEETTEEEEEEEETT
T ss_pred EEE-EEEcCCCCCCeEEEEcC
Confidence 988 66665533 444444
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=4.1e-14 Score=156.14 Aligned_cols=249 Identities=9% Similarity=0.040 Sum_probs=159.1
Q ss_pred cccceeEeEECCCCCEEEEe--eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecc-ccccc
Q 006808 4 SNIRDILTSFSPALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKK 80 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~-~~~~~ 80 (630)
..|+ .++|++++-+++.. +.+++..||....+.....+..+...+..... ......+.|.. ++
T Consensus 24 ~~~~--~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~SPD--- 89 (662)
T 3azo_A 24 GRPA--CVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVF---------EYSGFPWAGVPRPA--- 89 (662)
T ss_dssp SCCE--EEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGG---------GTCCCCEEEECCSS---
T ss_pred Cccc--eeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcccccccc---------ccCCccceeeeecC---
Confidence 3453 44899887777776 55888999986545545555544322221000 00111334541 33
Q ss_pred ccccCCcE-EEEEeC-CCeEEEEEcc--C-CeeeEEccCC----CCCCEEEEEEecCCCEEEEEeCC----------CcE
Q 006808 81 KRKLGSSL-LVLGTG-GGDVLALAVS--A-GQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD----------GMV 141 (630)
Q Consensus 81 ~~~~~~~~-l~~~~~-~g~v~iwd~~--~-~~~~~~~~~~----h~~~v~~~~~s~~g~~l~s~~~d----------g~v 141 (630)
++. |+.++. +..|.+|++. + +... .+... |...+.+++|+|||+.|++++.+ ..|
T Consensus 90 -----g~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 90 -----GGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp -----SSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred -----CCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 555 554443 5667777776 3 4432 33321 56778999999999999988876 589
Q ss_pred EEEeCCC------CceeEEee-cCCCCeEEEEEccCCCEEEEeC----------CeEEEEECC-CC---ceeeEeecCCC
Q 006808 142 CEIDPLT------GSLLGKFR-ASTKGISCMAVSSDGKMLATAA----------GQLKTFNCS-DH---KKMQKFSGHPG 200 (630)
Q Consensus 142 ~iwd~~~------~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~----------g~i~lwd~~-~~---~~~~~~~~h~~ 200 (630)
++||+.+ ++. ..+. .+...+..++|+|||++|+.++ ..|++||+. ++ +......+|..
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred EEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 9999987 544 4444 5556788899999999998765 279999998 56 44444455678
Q ss_pred CeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCCccccceeeeeecCCcee--------eeeEEecCCccCCCCCEEEEE
Q 006808 201 AVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVF--------MDCRCIDNGGVDDAGLYVLAI 270 (630)
Q Consensus 201 ~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~s~ 270 (630)
.+..+.|+|||++++++. .++ .|++|++.+++.. .+. .+.... .....++ |++.+++++
T Consensus 243 ~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~---~l~--~~~~~~~~p~w~~~~~~~~~~-----~~~~~~~~~ 311 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT---QLC--RREEEFAGPLWTPGMRWFAPL-----ANGLIAVVH 311 (662)
T ss_dssp CEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE---ESS--CCSSBSSCCCCSTTCCSEEEC-----TTSCEEEEE
T ss_pred eEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee---ecc--cccccccCccccccCceEeEe-----CCCEEEEEE
Confidence 899999999999555554 677 5666666555422 111 111111 2334454 789999999
Q ss_pred ecCCcEEEE--EcCCcc
Q 006808 271 SETGVCYIW--YGQNIE 285 (630)
Q Consensus 271 s~dg~i~iw--d~~~~~ 285 (630)
+. |.++|| |..+++
T Consensus 312 ~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 312 GK-GAAVLGILDPESGE 327 (662)
T ss_dssp BS-SSCEEEEEETTTTE
T ss_pred Ec-CccEEEEEECCCCc
Confidence 88 999999 555443
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=5.7e-14 Score=140.84 Aligned_cols=241 Identities=12% Similarity=0.099 Sum_probs=161.9
Q ss_pred CCCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 1 ~~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
|.+..|. +++|+|++..++..+.++.++.| .+.....+..+.. ...+++|.+.
T Consensus 3 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------------~~~~~~~~~~---- 55 (333)
T 2dg1_A 3 MSQQDLP--TLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGL------------------QLEGLNFDRQ---- 55 (333)
T ss_dssp ---CCCC--BCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCC------------------CEEEEEECTT----
T ss_pred ccccccc--eeeecCCccceeEEeecccCccc---ccceeEEEeccCc------------------cccCcEECCC----
Confidence 3566774 44999999888888888999999 3444444432221 2245566532
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC----CcEEEEeCCCCceeEEee
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----g~v~iwd~~~~~~~~~~~ 156 (630)
+.+++++..++.|.+||+.+++..... ..+...+.+++|+|+|+++++...+ +.|.+||..+++....+.
T Consensus 56 -----g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 56 -----GQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp -----SCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred -----CCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence 666677888899999999988765332 2356789999999999887777666 689999998776543333
Q ss_pred --cCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 157 --ASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 157 --~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.....+..++++|+|+++++.. +.|+.|+..+++.. .+..+...+..++|+|++++++++...++.|.+
T Consensus 130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 2345789999999998888765 35666666555433 333334457899999999877766555789999
Q ss_pred EEcCC-Cccccc---eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 227 WRTDG-VKKQSA---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 227 wd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|++.+ +..... ........ ......+++. ++|.++++...++.|.+||.
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d-----~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCID-----SDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEB-----TTCCEEEEEETTTEEEEECT
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEEC-----CCCCEEEEEcCCCEEEEECC
Confidence 99964 221100 00111111 1234556665 88888877777889999987
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=2.1e-13 Score=145.40 Aligned_cols=233 Identities=9% Similarity=-0.009 Sum_probs=164.0
Q ss_pred ECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE
Q 006808 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (630)
.+|.+.++++...+++|.++|..+++.+..+.... .+..+.++++ +++++++
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpD---------------------------Gr~lyv~ 214 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVI 214 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCC---------------------------CCEEEEE
Confidence 34444566677779999999999999988775322 1223333333 7889999
Q ss_pred eCCCeEEEEEcc--CCeeeEEccCCCCCCEEEEEEe----cCCCEEEEEe-CCCcEEEEeCCCCceeEEeecC-------
Q 006808 93 TGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFA----THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------- 158 (630)
Q Consensus 93 ~~~g~v~iwd~~--~~~~~~~~~~~h~~~v~~~~~s----~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~------- 158 (630)
+.++.|.+||+. +++.+.++..+ .....++|+ |+|+++++++ .++.|.++|..+.+.+..+...
T Consensus 215 ~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 215 GRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 292 (567)
T ss_dssp ETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred cCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence 999999999996 77777666543 357899999 6999988776 4589999999999988876532
Q ss_pred ----CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 159 ----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 159 ----~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
...+..+.+++++..+++.. |.|.++|..+.+.+. .+. .......+.|+|+|+++++++..++.|.++|+
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 12678888999877655543 899999987764322 222 33456788999999999888867889999999
Q ss_pred CCCccccceee-eeecCCceeeeeEEecCCccCCCCCEEE-EEe-cCCcEEEEEcCC
Q 006808 230 DGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVL-AIS-ETGVCYIWYGQN 283 (630)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s-~dg~i~iwd~~~ 283 (630)
.+++......+ ....|+..... ++. |++..+. ++. .++.|.++|..+
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~--~~~-----p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGAN--FVH-----PTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCcEEEEEeccCcCCCCcccee--eEC-----CCCCcEEEeCCCCCCeEEEecCCC
Confidence 98875421111 12234332222 244 7755554 443 468999999887
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.62 E-value=4.5e-14 Score=143.14 Aligned_cols=293 Identities=10% Similarity=0.025 Sum_probs=182.9
Q ss_pred CCCCEEEEee------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 15 PALDYFAICS------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 15 ~dg~~las~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++++++++.. .|+.|.+||..+++.+..+.....+ .+.++|+ +++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd---------------------------g~~ 63 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND---------------------------GKK 63 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTT---------------------------SSE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCC---------------------------CCE
Confidence 3667666553 3789999999999988777643222 3344443 677
Q ss_pred EEEEeC----------CCeEEEEEccCCeeeEEccCC-----CCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCce
Q 006808 89 LVLGTG----------GGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL 151 (630)
Q Consensus 89 l~~~~~----------~g~v~iwd~~~~~~~~~~~~~-----h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~~~~ 151 (630)
++++.. ++.|.+||+.+++.+.++... +......++|+|+|++++++.. ++.|.+||+.+++.
T Consensus 64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY 143 (361)
T ss_dssp EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence 888763 566999999998877665321 2245678999999999998864 57999999999988
Q ss_pred eEE-eecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCC-Cceee------EeecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 152 LGK-FRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD-HKKMQ------KFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 152 ~~~-~~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~-~~~~~------~~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
+.. +.... ...+.+.|++ ..+++.+ |.+.+|+... ++... .+..+..++ .+.++|++..++..+ .
T Consensus 144 ~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~ 219 (361)
T 2oiz_A 144 VEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-Y 219 (361)
T ss_dssp EEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-T
T ss_pred EEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-C
Confidence 877 55322 2335677765 3444333 8888888765 54431 122222232 344578887777776 5
Q ss_pred CCeEEEEEcCCCccccceeeeeec-----CCc---eeeeeEEecCCccCCCCCEEEEEec-----------CCcEEEEEc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAME-----HPA---VFMDCRCIDNGGVDDAGLYVLAISE-----------TGVCYIWYG 281 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~l~s~s~-----------dg~i~iwd~ 281 (630)
++.+.++|+........ ...... ... .-...+.++ |++.+++++.. .+.|.+||+
T Consensus 220 ~~~v~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~g~~~~a~~-----~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 220 YGNVYSADFSGDEVKVD-GPWSLLNDEDKAKNWVPGGYNLVGLH-----RASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp TSEEEEEECSSSSCEEE-EEEESCCHHHHHTTCEECCSSCEEEE-----TTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred CCeEEEEEecCCCceec-ccccccCccccccccccCCeeEEEEe-----cCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 88999999876542200 000000 000 001123455 88888777654 347999999
Q ss_pred CCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccC--ceeeEEeccCCCcEEEeecC
Q 006808 282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK--PSFQKILVNSGEDINLNCSQ 359 (630)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~--~~~~~~~~h~~~v~~~~~s~ 359 (630)
.+++.+....... .....++|+++ .+++++. +.+.++ ..... ..+..+..+-..-..++++|
T Consensus 294 ~t~~~v~~i~~~~---p~~ia~spdg~----~l~v~n~-~~v~v~--------D~~t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 294 KTKQRVARIPGRD---ALSMTIDQQRN----LMLTLDG-GNVNVY--------DISQPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp TTTEEEEEEECTT---CCEEEEETTTT----EEEEECS-SCEEEE--------ECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred CCCcEEEEEecCC---eeEEEECCCCC----EEEEeCC-CeEEEE--------ECCCCcceeeEEeccCCCCcEEEEecC
Confidence 9998876654333 22233688887 7776664 433332 22223 44445444555567899999
Q ss_pred Ccc
Q 006808 360 DGV 362 (630)
Q Consensus 360 dg~ 362 (630)
||.
T Consensus 358 ~G~ 360 (361)
T 2oiz_A 358 VGG 360 (361)
T ss_dssp CSC
T ss_pred CCC
Confidence 986
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=3.9e-14 Score=158.18 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=134.2
Q ss_pred eEECCCCCEEEEeeCC---------CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 11 TSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 11 ~~fs~dg~~las~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+|||||++||+++.+ +.+.+||+.+++... +..+... .....|+|.
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~------------------~~~~~~SPd----- 122 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNN------------------TQWVTWSPV----- 122 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTT------------------EEEEEECSS-----
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCc------------------ceeeEECCC-----
Confidence 4889999999998876 566799999987543 3333332 334455544
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCE-----------------EEEEEecCCCEEEEEeCCC-----
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----------------SAISFATHGSCIYSAGADG----- 139 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v-----------------~~~~~s~~g~~l~s~~~dg----- 139 (630)
++.|+.+ .++.|++|++.++........++...+ .++.|||||+.|+.++.|.
T Consensus 123 ----G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~ 197 (740)
T 4a5s_A 123 ----GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL 197 (740)
T ss_dssp ----TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred ----CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence 6667776 468999999998876533333443333 3589999999988875321
Q ss_pred -------------------------------cEEEEeCCC---Cc--eeEEee------cCCCCeEEEEEccCCCEEEEe
Q 006808 140 -------------------------------MVCEIDPLT---GS--LLGKFR------ASTKGISCMAVSSDGKMLATA 177 (630)
Q Consensus 140 -------------------------------~v~iwd~~~---~~--~~~~~~------~~~~~v~~l~~~p~~~~l~~~ 177 (630)
.|++||+.+ ++ ....+. ++...+..++|+|||+.++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 488899988 73 222333 266678999999999976655
Q ss_pred C------CeEEEEECCCCc----e--eeEe--ecCCCCeE-----EEEEeeCCcEEE-EEeeCCC--eEEEEEcCCCc
Q 006808 178 A------GQLKTFNCSDHK----K--MQKF--SGHPGAVR-----FMTFSDNGKYVL-SSAVGER--YIALWRTDGVK 233 (630)
Q Consensus 178 ~------g~i~lwd~~~~~----~--~~~~--~~h~~~v~-----~l~~sp~~~~l~-~~~~~d~--~i~vwd~~~~~ 233 (630)
. ..|++||+.+++ + +..+ .+|...+. .+.|+|||+.++ ..+..+| .|++|++.++.
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 3 379999999887 2 2222 45665554 789999999877 5553444 68888888765
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.58 E-value=5.7e-13 Score=133.28 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=150.7
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEee---------cCCCCeEEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFR---------ASTKGISCM 165 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~---------~~~~~v~~l 165 (630)
+.|.+||..+++....+..++-..+.+++++|+|+++++...++.|++||..... .+..+. .+-.....+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 4799999999988766655566689999999999988888889999999975432 455552 333468899
Q ss_pred EEcc-CCCEEEEeC---CeEEEEECCCCceeeEeecC----------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 166 AVSS-DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 166 ~~~p-~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h----------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+++| ++.++++.+ +.|++|+ .+++.+..+... -.....++++|++..++++...++.|++|+..+
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~ 227 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT 227 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence 9999 888888873 7999999 567777666422 234789999999445555555788999999986
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEE-------EecCCcEEEEEcCCcccccccCceeEEeeccCCCc
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA-------ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (630)
++.. ..+...........+.+. | +..+++ ...++.|++|+..+++.+....+
T Consensus 228 G~~~---~~~~~~~~~~~~~~~~~~-----p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------ 286 (329)
T 3fvz_A 228 KEFV---REIKHASFGRNVFAISYI-----P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------ 286 (329)
T ss_dssp CCEE---EEECCTTTTTCEEEEEEE-----T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------------
T ss_pred CcEE---EEEeccccCCCcceeeec-----C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------------
Confidence 6533 122112222223344454 6 333332 23344788888766654322110
Q ss_pred ccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
...+......++++|||.++ ++.+.++.+++|++.
T Consensus 287 ----------------------------------------~~~~~~~p~~ia~~~dG~ly-vad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 287 ----------------------------------------VRKHFDMPHDIVASEDGTVY-IGDAHTNTVWKFTLT 321 (329)
T ss_dssp ----------------------------------------SSSCCSSEEEEEECTTSEEE-EEESSSCCEEEEEEE
T ss_pred ----------------------------------------CCCccCCeeEEEECCCCCEE-EEECCCCEEEEEeCC
Confidence 00233456789999999777 888888999999874
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=1.1e-12 Score=145.89 Aligned_cols=237 Identities=12% Similarity=0.068 Sum_probs=157.1
Q ss_pred eEeEECCCCCEEEEeeCCC-----cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..++|||||++||.++.++ +|++||+.+|+......... .+..+.|.+.
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-------------------~~~~~~wspD------- 181 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-------------------KFSCMAWTHD------- 181 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-------------------CSCCEEECTT-------
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-------------------ccceEEEEeC-------
Confidence 3459999999999876533 89999999998765322110 1234566654
Q ss_pred cCCcEEEEEeCCCe----------------EEEEEccCCeee--EEc-cCCCCCCEEEEEEecCCCEEEEEeC-----CC
Q 006808 84 LGSSLLVLGTGGGD----------------VLALAVSAGQLK--WRL-SDCHPGGVSAISFATHGSCIYSAGA-----DG 139 (630)
Q Consensus 84 ~~~~~l~~~~~~g~----------------v~iwd~~~~~~~--~~~-~~~h~~~v~~~~~s~~g~~l~s~~~-----dg 139 (630)
++.|+.++.++. |++|++.++... ..+ ...|...+.++.|+|+|++|+.++. +.
T Consensus 182 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 --GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp --SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred --CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 666777776654 999999887621 111 1235566889999999999887664 56
Q ss_pred cEEEEeCCC------Cc-eeEEeecCCCCeEEEEEccCCCEEEEeC------CeEEEEECCCCc--eeeEeecCCC--Ce
Q 006808 140 MVCEIDPLT------GS-LLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK--KMQKFSGHPG--AV 202 (630)
Q Consensus 140 ~v~iwd~~~------~~-~~~~~~~~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~--~~~~~~~h~~--~v 202 (630)
.|++||+.+ +. ....+..+...+.. .|+|+|..|+..+ +.|.+||+.++. ....+..|.. .+
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 338 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence 899999976 43 45566666665554 4889888777654 379999998774 2345555544 67
Q ss_pred EEEEEeeCCcEEEEEeeCCCe--EEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec----CCcE
Q 006808 203 RFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----TGVC 276 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----dg~i 276 (630)
..+.|++++..+++.. .++. |++|++.+++.. ..+..+...+..+.++ |++..++.... .+.+
T Consensus 339 ~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i 407 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGII 407 (710)
T ss_dssp EEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEE
T ss_pred EEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecC-----CCCCEEEEEEeCCCCCCEE
Confidence 8899987666666655 5774 666777555422 1222223334444554 78876654422 4689
Q ss_pred EEEEcCCcc
Q 006808 277 YIWYGQNIE 285 (630)
Q Consensus 277 ~iwd~~~~~ 285 (630)
++||+.+++
T Consensus 408 ~~~d~~tg~ 416 (710)
T 2xdw_A 408 YHCDLTKEE 416 (710)
T ss_dssp EEEETTSSS
T ss_pred EEEECCCCc
Confidence 999998776
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=9.8e-13 Score=127.59 Aligned_cols=216 Identities=11% Similarity=0.112 Sum_probs=155.2
Q ss_pred CCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC
Q 006808 15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (630)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (630)
..+++|++++.++.|.+||.++|+.+.++..+.. ....++.+.+. +++++ +.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-----------------~~~~~~~~~pd---------G~ilv--s~ 54 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-----------------WECNSVAATKA---------GEILF--SY 54 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-----------------CCCCEEEECTT---------SCEEE--EC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-----------------CCCcCeEECCC---------CCEEE--eC
Confidence 3467899999999999999999999998875431 01122333221 66666 56
Q ss_pred CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeecCC------CCeEEEEE
Q 006808 95 GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAST------KGISCMAV 167 (630)
Q Consensus 95 ~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~------~~v~~l~~ 167 (630)
++.|..||. +++.++++..++...+.++.+.++|+++++.+. ++.|..+|. +|+.+..+.... .....+++
T Consensus 55 ~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~ 132 (276)
T 3no2_A 55 SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK 132 (276)
T ss_dssp BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE
Confidence 778999999 899888886544457889999999999999887 788888885 788777765321 23456778
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
.++|.++++.. +.|..||.. |+.+.++..+ ..+.++.+.++|..+++++ .++.|..+|..+++.. ..+....
T Consensus 133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~---w~~~~~~ 206 (276)
T 3no2_A 133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIV---RRVNAND 206 (276)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEE---EEEEGGG
T ss_pred CCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEE---EEecCCC
Confidence 99999999886 899999987 9998888754 3456678889999888776 5778999999887743 2221110
Q ss_pred ----CceeeeeEEecCCccCCCCCEEEEEe
Q 006808 246 ----PAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 246 ----~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
.-......... ++|..+++..
T Consensus 207 ~~~~~l~~~~~~~~~-----~~G~i~v~~~ 231 (276)
T 3no2_A 207 IEGVQLFFVAQLFPL-----QNGGLYICNW 231 (276)
T ss_dssp SBSCCCSEEEEEEEC-----TTSCEEEEEE
T ss_pred CCCccccccccceEc-----CCCCEEEEec
Confidence 11223334443 7788777764
No 177
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=1e-12 Score=127.23 Aligned_cols=238 Identities=8% Similarity=-0.029 Sum_probs=154.1
Q ss_pred eEeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
..++++++|++++ +.+.++.|.+|+..++.......... ....++++.+. +.
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------~~p~~i~~~~~---------g~ 79 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL------------------YQPQGLAVDGA---------GT 79 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC------------------CSCCCEEECTT---------CC
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc------------------CCcceeEECCC---------CC
Confidence 3559999999777 54678899999976544321111000 11234444432 45
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
++++..++.|.+||...+... .+.......+.++++.++|+.+++...++.|.+|+..+.............+.++++
T Consensus 80 -l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 80 -VYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp -EEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred -EEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 444444888999998766543 332233357899999999987777777889999986655443222222346788999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
+|+|+++++.. +.|.+||............+...+.+++++++|..+++.. .++.|.+|+....... .....+
T Consensus 158 ~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~~~----~~~~~~ 232 (270)
T 1rwi_B 158 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST----VLPFTG 232 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSCCE----ECCCCS
T ss_pred eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCcce----eeccCC
Confidence 99998777665 7999999877654433333336788999999996555544 5788999998764322 111111
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
. .....+++. ++|..+++...++.|++|+....+.
T Consensus 233 ~-~~p~~i~~~-----~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 233 L-NTPLAVAVD-----SDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp C-SCEEEEEEC-----TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C-CCceeEEEC-----CCCCEEEEECCCCEEEEEcCCCccc
Confidence 1 234455665 8899888888899999999865543
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.57 E-value=9.8e-13 Score=133.25 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=158.9
Q ss_pred EeEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccc------cccccccccccccccccccceeeEEe
Q 006808 10 LTSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA------STETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 10 ~~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
.++|+|||+++++++ .++.|.+||..+++.+.++.... ..+..+.++|+
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd--------------- 118 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD--------------- 118 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT---------------
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC---------------
Confidence 459999999999886 26789999999999888775321 12222333333
Q ss_pred cccccccccccCCcEEEEEeC--CCeEEEEEccCCeeeEE-ccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCC-
Q 006808 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT- 148 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~- 148 (630)
+++|+++.. ++.|.+||+.+++.+.. +.. .....+.+.|++ ..+++.+.||.+.+|++..
T Consensus 119 ------------g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 119 ------------GKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp ------------SSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred ------------CCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 777888764 57899999999988766 532 223446677865 5688888999999999865
Q ss_pred CceeE------EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce--eeEeec------C----CCCeEEEEEe
Q 006808 149 GSLLG------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG------H----PGAVRFMTFS 208 (630)
Q Consensus 149 ~~~~~------~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~--~~~~~~------h----~~~v~~l~~s 208 (630)
++... .+.....++ .+.++|++..++..+ +.|+++|+..... ...+.- + ......++|+
T Consensus 184 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 55442 222222222 334467776666555 8999999875532 222211 0 0112237899
Q ss_pred eCCcEEEEEee----------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 209 DNGKYVLSSAV----------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 209 p~~~~l~~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
|+++.++++.. ..+.|.+||+.+.+.. ..+.... ...+.++ |+|++|++++. +.|.+
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-----~~i~~~~--p~~ia~s-----pdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-----ARIPGRD--ALSMTID-----QQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-----EEEECTT--CCEEEEE-----TTTTEEEEECS-SCEEE
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-----EEEecCC--eeEEEEC-----CCCCEEEEeCC-CeEEE
Confidence 99888887653 1348999999988643 2233233 4556666 99999998887 99999
Q ss_pred EEcCCc--cccccc
Q 006808 279 WYGQNI--EELRNT 290 (630)
Q Consensus 279 wd~~~~--~~~~~~ 290 (630)
||..++ +.+...
T Consensus 330 ~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 330 YDISQPEPKLLRTI 343 (361)
T ss_dssp EECSSSSCEEEEEE
T ss_pred EECCCCcceeeEEe
Confidence 999999 776653
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.55 E-value=4.5e-13 Score=137.58 Aligned_cols=248 Identities=10% Similarity=0.062 Sum_probs=149.4
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEeccccccccc---ccccccccccccccceeeEEecccccccccccCCc
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT---SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+.|||||++||+++.++.|++||+.+++....+..+...... +.|... ............|.|. +.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~~~~spd---------g~ 154 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC--TKLVGIEILKRDWQPL---------TS 154 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCC---------CS
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC--CccccccccccccCCC---------Cc
Confidence 489999999999999999999999988765544422221000 111000 0000000000122221 33
Q ss_pred EEEEE-----eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCC------CcEEEEeCCCCceeEEe
Q 006808 88 LLVLG-----TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 88 ~l~~~-----~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d------g~v~iwd~~~~~~~~~~ 155 (630)
.++.+ ..+..|.+||+.+++..... .+...+..+.|+| +++.|+.++.+ ..|.+||+..++.....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp HHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred ceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 33333 34557999999988765333 4667899999999 78877665543 36889998766543322
Q ss_pred ecC-CCCeEEEEEccCCCEEEEeC-----Ce--EEEEECCCCceeeEeecCCCCeEEEEEee-CCcEEEEEee-------
Q 006808 156 RAS-TKGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAV------- 219 (630)
Q Consensus 156 ~~~-~~~v~~l~~~p~~~~l~~~~-----g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~------- 219 (630)
... ...+..++|+|+|++|+.++ .. |++||+.+++...... ... .. +.|+| +|+++++++.
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC-----
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeec
Confidence 311 23578899999999877764 24 9999998886543222 222 33 89999 9998877542
Q ss_pred --------CCCeEEEEEcCCCccccceeeeeecCCce----------eeeeEEecCCccCCCCCEEEEEec-CCcEEEE-
Q 006808 220 --------GERYIALWRTDGVKKQSASCVLAMEHPAV----------FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW- 279 (630)
Q Consensus 220 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iw- 279 (630)
.+..|++||+.+++.. .+ . .+... ......|+ |+|++|+.++. ++...||
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~---~l-~-~~~~~~~~~~~~~~~~~~~~~~s-----~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAKSAQ---KL-C-KHSTSWDVLDGDRQITHPHPSFT-----PNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp -----CCCCCCEEEEEETTTTBCC---EE-E-ECCCCCCCBTTBSSTTCCCCEEC-----TTSSEEEEEECTTSSCEEEE
T ss_pred cccccccCCCCcEEEEecccCceE---Ec-c-CCCCccccccccccCCCCCceEc-----cCCCeEEEEecCCCCceEEE
Confidence 2468999999877533 11 1 11111 12233455 99998887765 5555555
Q ss_pred -EcCCc
Q 006808 280 -YGQNI 284 (630)
Q Consensus 280 -d~~~~ 284 (630)
++.++
T Consensus 380 ~~~~~~ 385 (396)
T 3c5m_A 380 ADVPES 385 (396)
T ss_dssp EECCTT
T ss_pred EEEccc
Confidence 44444
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=1.3e-12 Score=128.62 Aligned_cols=231 Identities=12% Similarity=0.080 Sum_probs=151.1
Q ss_pred EeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+++|+|+|+ +++++..++.|..|+..++ ...+..+.. .+.++++.+. +.+
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~------------------~~~~l~~~~d---------g~l 82 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH------------------HQNGHCLNKQ---------GHL 82 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS------------------SEEEEEECTT---------CCE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC------------------CcceeeECCC---------CcE
Confidence 459999998 7778888999999999877 444443222 2334555442 566
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEcc--C-CCCCCEEEEEEecCCCEEEEE----e-------------CCCcEEEEeCCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLS--D-CHPGGVSAISFATHGSCIYSA----G-------------ADGMVCEIDPLT 148 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~--~-~h~~~v~~~~~s~~g~~l~s~----~-------------~dg~v~iwd~~~ 148 (630)
+++...++.|.+||..+++...... . .....+.+++++|+|+++++. + ..+.|..++..
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 6555566889999998887542221 1 112356789999999988773 2 13456666654
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECC-CCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~-~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
++ ...+..+......++|+|+|+.+++.+ +.|++|++. ++.. ...+..+...+.+++++++|+.+++. ++
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~ 237 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD 237 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence 44 344455566778999999999885555 799999987 4544 23343345567789999999865544 67
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
.|.+|+.. ++. ...+..+.. +..++|. .|+++.|++++.+ .+.-++..+...
T Consensus 238 ~v~~~~~~-g~~-----~~~~~~~~~-~~~~~f~----~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 238 GVHVLTPD-GDE-----LGRVLTPQT-TSNLCFG----GPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEECTT-SCE-----EEEEECSSC-CCEEEEE----STTSCEEEEEETT-EEEEEECSCCBC
T ss_pred eEEEECCC-CCE-----EEEEECCCC-ceeEEEE----CCCCCEEEEEcCC-eEEEEEcccccc
Confidence 89999986 332 222222222 4445552 1788888888875 455556665544
No 181
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=2.3e-12 Score=128.68 Aligned_cols=235 Identities=9% Similarity=0.035 Sum_probs=160.1
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
++. ++.++++...++.|.+||..+++.+.++... . ....+++.+. + .+++
T Consensus 50 ~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~------------------~p~~i~~~~~---------g-~lyv 99 (328)
T 3dsm_A 50 VIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-T------------------SPRYIHFLSD---------E-KAYV 99 (328)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-S------------------SEEEEEEEET---------T-EEEE
T ss_pred EEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-C------------------CCcEEEEeCC---------C-eEEE
Confidence 453 3445555556799999999999998877421 1 1223333221 4 4555
Q ss_pred Ee-CCCeEEEEEccCCeeeEEccCCC----CCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 92 GT-GGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 92 ~~-~~g~v~iwd~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+. .++.|.+||+.+++....+..+. ......+++ ++..++.++ .++.|.+||+.+++.+..+... .....
T Consensus 100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~ 176 (328)
T 3dsm_A 100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTS 176 (328)
T ss_dssp EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCC
T ss_pred EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccc
Confidence 55 78999999999998876554332 114566777 345555554 4889999999999988887753 34578
Q ss_pred EEEccCCCEEEEeCC------------eEEEEECCCCceeeEeecC-CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 165 MAVSSDGKMLATAAG------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 165 l~~~p~~~~l~~~~g------------~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
++++|+|++++++.+ .|.+||..+++....+... ......++|+|++++++++. . .|.+||..+
T Consensus 177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~--~v~~~d~~t 253 (328)
T 3dsm_A 177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N--DIWRMPVEA 253 (328)
T ss_dssp CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S--SEEEEETTC
T ss_pred eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c--EEEEEECCC
Confidence 999999998777653 6999999999877776532 23678999999999988865 2 899999988
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCC-CCCEEEEE----ecCCcEEEEEcCCcccccccC
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAI----SETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~ 291 (630)
++... .............++++ | ++...++. ..++.|.+||.. ++.+....
T Consensus 254 ~~~~~---~~~~~~~~~~p~gi~vd-----p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 254 DRVPV---RPFLEFRDTKYYGLTVN-----PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SSCCS---SCSBCCCSSCEEEEEEC-----TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred Cceee---eeeecCCCCceEEEEEc-----CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 76421 11111112334455665 7 45555555 568899999987 87766543
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.52 E-value=3.5e-12 Score=128.47 Aligned_cols=213 Identities=10% Similarity=0.068 Sum_probs=136.5
Q ss_pred EECCCCCEEEEee---------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 12 SFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 12 ~fs~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+| ||+++|... .++.|.+||+.+++... + ..+ ..+.|.|.
T Consensus 21 ~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~------------------~~~~~SpD------ 69 (347)
T 2gop_A 21 RT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENA------------------TMPRISPD------ 69 (347)
T ss_dssp EE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESC------------------EEEEECTT------
T ss_pred eE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccC------------------CCeEECCC------
Confidence 56 899888653 25679999998876532 2 122 23445443
Q ss_pred ccCCcEEEEEeCC---C--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-------------------
Q 006808 83 KLGSSLLVLGTGG---G--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------------- 138 (630)
Q Consensus 83 ~~~~~~l~~~~~~---g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------------------- 138 (630)
+..|+.++.+ + .|.+|++.+++...... +.. +.+++|+|+|+.|+.++.+
T Consensus 70 ---g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g 143 (347)
T 2gop_A 70 ---GKKIAFMRANEEKKVSEIWVADLETLSSKKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD 143 (347)
T ss_dssp ---SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred ---CCEEEEEEeccCCCcceEEEEECCCCceEEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence 6666666543 3 38888998887653332 223 9999999999998877632
Q ss_pred --------CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C--------eEEEEECCCCceeeEeecCCCC
Q 006808 139 --------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------QLKTFNCSDHKKMQKFSGHPGA 201 (630)
Q Consensus 139 --------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g--------~i~lwd~~~~~~~~~~~~h~~~ 201 (630)
..|++||+.+++.+..+.. . .+..++|+|+| +++++. . ...+|.+.+++ ...+..+ ..
T Consensus 144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~ 218 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VS 218 (347)
T ss_dssp ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ES
T ss_pred cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cc
Confidence 5799999998887455554 3 78899999999 777663 1 23444333554 3444444 55
Q ss_pred eEEEEEeeCCcEEEEEeeCC-------CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 202 VRFMTFSDNGKYVLSSAVGE-------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 202 v~~l~~sp~~~~l~~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
+..+ +|+|++|+.++..+ ..|.+|| +++.. .....+...+.....| + ++ ++++++.+|
T Consensus 219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~----~l~~~~~~~~~~~~~~-----s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM----GILDEVDRGVGQAKIK-----D-GK-VYFTLFEEG 283 (347)
T ss_dssp EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE----ESSTTCCSEEEEEEEE-----T-TE-EEEEEEETT
T ss_pred eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE----eccccCCcccCCccEE-----c-Cc-EEEEEecCC
Confidence 5554 99999988876322 3678887 33311 1111222333222445 2 56 888889999
Q ss_pred cEEEEEcC
Q 006808 275 VCYIWYGQ 282 (630)
Q Consensus 275 ~i~iwd~~ 282 (630)
.++|| +.
T Consensus 284 ~~~l~-~~ 290 (347)
T 2gop_A 284 SVNLY-IW 290 (347)
T ss_dssp EEEEE-EE
T ss_pred cEEEE-Ec
Confidence 99999 85
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.51 E-value=1.7e-11 Score=122.75 Aligned_cols=226 Identities=13% Similarity=0.112 Sum_probs=145.6
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++|+|+|++++++..++.|.+||..+++.......+. ..+.+++|.+. +.++
T Consensus 49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------------~~~~~i~~~~d---------g~l~ 101 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK------------------ANPAAIKIHKD---------GRLF 101 (333)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS------------------SSEEEEEECTT---------SCEE
T ss_pred CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC------------------CCcceEEECCC---------CcEE
Confidence 45899999988888889999999998887654332111 13445555443 5555
Q ss_pred EEEeCC----CeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecC
Q 006808 90 VLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 90 ~~~~~~----g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~ 158 (630)
++...+ +.|.+||..++.....+. ..+...+.+++++|+|+.+++... .+.|..||..+++... +...
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 180 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN 180 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence 555555 589999998876542221 234467999999999987776653 3567777766555433 2223
Q ss_pred CCCeEEEEEccCCCEEEEeC---CeEEEEECCC-CceeeE--------eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~~~~--------~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
...+..++|+|+|+.++++. +.|++|++.+ +..+.. +.++ ..+..++++++|+.+++.. .++.|.+
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~-~~~~v~~ 258 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY-GQGRVLV 258 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-TTTEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-CCCEEEE
Confidence 34578999999998665543 7999999864 333221 1222 3678899999998776655 5789999
Q ss_pred EEcCCCccccceeeeeecCC----ceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 227 WRTDGVKKQSASCVLAMEHP----AVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
|+.. ++.. ..+..... ......++|+ |++..|+.++.+|
T Consensus 259 ~d~~-g~~~---~~~~~~~~~~g~~~~~~~~~~~-----~dg~~L~v~~~~g 301 (333)
T 2dg1_A 259 FNKR-GYPI---GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSNDI 301 (333)
T ss_dssp ECTT-SCEE---EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEECG
T ss_pred ECCC-CCEE---EEEEcCCCccccccCcceEEEC-----CCCCEEEEEeCcc
Confidence 9984 3321 12221111 0134455665 8887777666653
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.51 E-value=8.8e-13 Score=145.50 Aligned_cols=196 Identities=12% Similarity=0.064 Sum_probs=131.0
Q ss_pred EEC--CCCCE-EEEeeC-CCcEEEEECC--C-CcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 12 SFS--PALDY-FAICSG-DARIKIWDTL--K-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 12 ~fs--~dg~~-las~s~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.|+ |||++ ||.++. +..|.+|++. + +. ...+..... ......+..++|.|.
T Consensus 83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------~~~~~~~~~~~~spD-------- 140 (662)
T 3azo_A 83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------VGGGLRWADPVLLPE-------- 140 (662)
T ss_dssp EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------STTCEEEEEEEEETT--------
T ss_pred eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------CCCCccccCcEECCC--------
Confidence 454 99998 877664 5677777765 2 33 333332100 001223456667665
Q ss_pred CCcEEEEEeCC----------CeEEEEEccC------CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC--------Cc
Q 006808 85 GSSLLVLGTGG----------GDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--------GM 140 (630)
Q Consensus 85 ~~~~l~~~~~~----------g~v~iwd~~~------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d--------g~ 140 (630)
++.|++++.+ ..|++||+.+ +... .+...+...+..++|+|||++|+.++.+ ..
T Consensus 141 -g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 141 -RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp -TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred -CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence 6677777765 4799999988 5543 4431355678889999999999877754 37
Q ss_pred EEEEeCC-CC---ceeEEeecCCCCeEEEEEccCCCEEEEeC--C--eEEEEECCCCceeeEeecCCCC--------eEE
Q 006808 141 VCEIDPL-TG---SLLGKFRASTKGISCMAVSSDGKMLATAA--G--QLKTFNCSDHKKMQKFSGHPGA--------VRF 204 (630)
Q Consensus 141 v~iwd~~-~~---~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g--~i~lwd~~~~~~~~~~~~h~~~--------v~~ 204 (630)
|++||+. ++ +.......+...+..++|+|||+++++++ + .|++||+.+++......++... +..
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 9999998 56 44444444567899999999999777766 4 7888888777654333333222 567
Q ss_pred EEEeeCCcEEEEEeeCCCeEEEE--EcCCCc
Q 006808 205 MTFSDNGKYVLSSAVGERYIALW--RTDGVK 233 (630)
Q Consensus 205 l~~sp~~~~l~~~~~~d~~i~vw--d~~~~~ 233 (630)
++|+|+++.++++. . +.+++| ++.++.
T Consensus 299 ~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 299 FAPLANGLIAVVHG-K-GAAVLGILDPESGE 327 (662)
T ss_dssp EEECTTSCEEEEEB-S-SSCEEEEEETTTTE
T ss_pred EeEeCCCEEEEEEE-c-CccEEEEEECCCCc
Confidence 89999999887776 5 888888 554443
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.50 E-value=6.6e-12 Score=139.47 Aligned_cols=201 Identities=8% Similarity=-0.026 Sum_probs=135.7
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCC-C----eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCc-
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM- 140 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~-g----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~- 140 (630)
.+..+.|+|. +++|+.+... | .|++||+.+++....... + ..+.+++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPD---------g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 126 ALRGYAFSED---------GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp EEEEEEECTT---------SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCS
T ss_pred EEEEEEECCC---------CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEEeCCCEEEEEEECCcc
Confidence 4556777755 6667665543 3 799999999987643322 2 23678999999999998887766
Q ss_pred ---------------EEEEeCCCCcee--EEeec--CCCCeEEEEEccCCCEEEEeC-------CeEEEEECCC------
Q 006808 141 ---------------VCEIDPLTGSLL--GKFRA--STKGISCMAVSSDGKMLATAA-------GQLKTFNCSD------ 188 (630)
Q Consensus 141 ---------------v~iwd~~~~~~~--~~~~~--~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~------ 188 (630)
|++|++.+++.. ..+.. +...+..+.|+|||++|+.++ ..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 999999887632 22332 344578999999999988764 3799999976
Q ss_pred Cc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCC---CeEEEEEcCCCccccceeeeeecCCc-eeeeeEEecCCccCCC
Q 006808 189 HK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDA 263 (630)
Q Consensus 189 ~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 263 (630)
+. ....+..+...+.. .|+|+|..|+..+..+ ..|.+|++.++.... ......+.. ..+..+.+. ++
T Consensus 275 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~-----~~ 346 (710)
T 2xdw_A 275 GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK--WKVLVPEHEKDVLEWVACV-----RS 346 (710)
T ss_dssp SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSCEEEEEEEE-----TT
T ss_pred CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc--ceeccCCCCCCeEEEEEEE-----cC
Confidence 43 45666667666655 5889999888776433 369999998764211 111223322 344444554 67
Q ss_pred CCEEEEEecCCc--EEEEEcCCccc
Q 006808 264 GLYVLAISETGV--CYIWYGQNIEE 286 (630)
Q Consensus 264 ~~~l~s~s~dg~--i~iwd~~~~~~ 286 (630)
+.++++...+|. |++|++.+++.
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CEEEEEEEECCEEEEEEEECCCCCE
Confidence 778888888884 56667655543
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.50 E-value=1.3e-11 Score=131.49 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=147.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC--CCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~ 163 (630)
+.++++...++.|.++|..+++.+.++..+ ..+..+.|+|+|+++++++.|+.|.+||+. +++.+..+.... ...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~ 243 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EAR 243 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCc
Confidence 445666667889999999999988777533 457799999999999999999999999996 888888887543 467
Q ss_pred EEEEc----cCCCEEEEeC---CeEEEEECCCCceeeEeec----------CCC-CeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 164 CMAVS----SDGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HPG-AVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 164 ~l~~~----p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.++|+ |+|+++++++ ++|.++|..+.+.+.++.. |.. .+..+.+++++..+++.....|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 99999 7999999887 8999999999988877642 222 5788899998877776666779999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~ 289 (630)
++|....+.. .+..+... .......|+ |+|+++++++ .++.|.++|..+++.+..
T Consensus 324 ~vd~~~~~~~---~v~~i~~~-~~~~d~~~~-----pdgr~~~va~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 324 LVDYTDLNNL---KTTEISAE-RFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp EEETTCSSEE---EEEEEECC-SSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEecCCCccc---eeeeeecc-ccccCceEC-----CCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence 9998775432 12222222 223344565 9999887766 578999999999876543
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=2.5e-12 Score=129.52 Aligned_cols=218 Identities=10% Similarity=0.025 Sum_probs=138.8
Q ss_pred eEeEECCCCCEEEEeeCC---C--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGD---A--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d---g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..++|||||++||+++.+ + .|.+|++.+++........ . +..+.|.|.
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~------------------~--~~~~~wspd------- 114 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK------------------N--IRSLEWNED------- 114 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES------------------E--EEEEEECTT-------
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC------------------C--ccceeECCC-------
Confidence 345999999999988754 3 3888898887765433211 1 445566554
Q ss_pred cCCcEEEEEeC---------------------------CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe
Q 006808 84 LGSSLLVLGTG---------------------------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG 136 (630)
Q Consensus 84 ~~~~~l~~~~~---------------------------~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 136 (630)
++.|+.++. ...|.+||+.+++.+..+.. . .+..+.|+|+| .+++++
T Consensus 115 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 115 --SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp --SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEE
T ss_pred --CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEe
Confidence 555665542 24699999998887334432 2 78899999999 777775
Q ss_pred CCC-------cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC----------CeEEEEECCCCceeeEeecCC
Q 006808 137 ADG-------MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHP 199 (630)
Q Consensus 137 ~dg-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~ 199 (630)
.++ ...+|.+.+++. ..+..+ ..+..+ +|+|++|+.++ ..|++|| +++......+|.
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~ 262 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD 262 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC
T ss_pred cccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC
Confidence 542 334444335544 334334 445444 99999887654 2688888 555444445566
Q ss_pred CCeEE-EEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcE-E
Q 006808 200 GAVRF-MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC-Y 277 (630)
Q Consensus 200 ~~v~~-l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i-~ 277 (630)
..+.. +.|+ ++ .+++++ .++.+++| +.+++. .....+ ...+....++ | .++++++.++.. .
T Consensus 263 ~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g~~-----~~~~~~-~~~v~~~~~s-----~--~~~~~~~~~~~~~~ 325 (347)
T 2gop_A 263 RGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDGEI-----KPIAKG-RHWIMGFDVD-----E--IVVYLKETATRLRE 325 (347)
T ss_dssp SEEEEEEEET-TE-EEEEEE-ETTEEEEE-EESSSE-----EEEECS-SSEEEEEEES-----S--SEEEEEECSSSCCE
T ss_pred cccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCCce-----EEEecC-CCeEEeeeee-----C--cEEEEEcCCCChHH
Confidence 77886 8999 88 666665 68999999 874331 122233 3344455565 6 677777776654 7
Q ss_pred EEEcC
Q 006808 278 IWYGQ 282 (630)
Q Consensus 278 iwd~~ 282 (630)
||.+.
T Consensus 326 l~~~~ 330 (347)
T 2gop_A 326 LFTWD 330 (347)
T ss_dssp EEEES
T ss_pred heEeC
Confidence 77665
No 188
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.47 E-value=2.2e-11 Score=118.94 Aligned_cols=192 Identities=13% Similarity=0.147 Sum_probs=136.5
Q ss_pred eEeEE-CCCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSF-SPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~f-s~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
..+++ .++|.++++... ++.|.+|+ .+++.+..+.... ......+++.+. +
T Consensus 80 ~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~-----------------~~~~~~i~~~~~---------g 132 (286)
T 1q7f_A 80 NRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATI-----------------LQHPRGVTVDNK---------G 132 (286)
T ss_dssp EEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTT-----------------CSCEEEEEECTT---------S
T ss_pred eEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCcc-----------------CCCceEEEEeCC---------C
Confidence 34588 578877776643 78999999 5677766553210 112334444442 6
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC--CCeE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST--KGIS 163 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~ 163 (630)
.++++...++.|.+|+.. ++....+. .++...+.+++++++|+.+++...++.|++||. .++.+..+..+. ..+.
T Consensus 133 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~ 210 (286)
T 1q7f_A 133 RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPI 210 (286)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEE
T ss_pred CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCc
Confidence 666666678899999965 44443432 134567899999999987777778899999997 566666665432 5789
Q ss_pred EEEEccCCCEEEEeC--C-eEEEEECCCCceeeEeecCCC--CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 164 CMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g-~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.++++|+|.++++.. + .|.+|+. +++.+..+..+.. .+.+++++|+|+.+++ + .++.|++|++...
T Consensus 211 ~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~-~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 211 GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-S-KDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-E-TTTEEEEEECSCC
T ss_pred EEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-C-CCCeEEEEEcccc
Confidence 999999998888875 4 8999995 5667777765433 4789999999986655 5 5899999998654
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.46 E-value=5.2e-12 Score=122.47 Aligned_cols=188 Identities=12% Similarity=0.135 Sum_probs=143.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-CCeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISC 164 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~ 164 (630)
+++|++++.++.|.+||..+|+.++++..+....+.++.++|+|++++ +.++.|..||. +++.+..+..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 678999999999999999999999888643324688999999999888 35778999998 899999988753 47889
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceeeEee------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+.+.|+|+++++.+ +.|..+|. +|+.+.++. ++......+++.++|.++++.. .++.|.+||.. ++..
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEEEECTT-SCEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEEEECCC-CCEE
Confidence 99999999998875 36666675 677776664 2223455677899999988776 68999999987 6643
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
..+... ..... .... ++|..+++++.+++|..||..+|+.+...
T Consensus 159 ---w~~~~~--~~~~~-~~~~-----~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 159 ---NSVKLS--GTPFS-SAFL-----DNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp ---EEEECS--SCCCE-EEEC-----TTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred ---EEEECC--CCccc-eeEc-----CCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 233322 22222 2333 78999999888889999999989876554
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.46 E-value=8.2e-12 Score=138.33 Aligned_cols=237 Identities=10% Similarity=0.007 Sum_probs=145.6
Q ss_pred ECCCCCEEEEeeCCC---cEEEE--ECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 13 FSPALDYFAICSGDA---RIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 13 fs~dg~~las~s~dg---~i~vw--d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.+|+|++++....++ .-.+| +...+....-+.. . .+..+|. ..+..+.|+|. ++
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~-~----------~~a~~~~-~~~~~~~~SPD---------G~ 133 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDP-N----------GWSKDGT-VSLGTWAVSWD---------GK 133 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECG-G----------GSSSSSC-EEEEEEEECTT---------SS
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEch-H----------HhccCCC-EEEEEEEECCC---------CC
Confidence 458999988777643 34444 4434432221111 0 0011232 34566677754 55
Q ss_pred EEEEEe-----CCCeEEEEEccCCeee-EEccCCCCCCEEEEEEecCCCEEEEEeCCCc-------------EEEEeCCC
Q 006808 88 LLVLGT-----GGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPLT 148 (630)
Q Consensus 88 ~l~~~~-----~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~-------------v~iwd~~~ 148 (630)
+|+.+. .+..|++||+.+++.+ ...... ....+++|+|||+.|+.++.|.. |++|++.+
T Consensus 134 ~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t 211 (695)
T 2bkl_A 134 KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT 211 (695)
T ss_dssp EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS
T ss_pred EEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCC
Confidence 566332 2346999999998864 221111 11268999999999999888776 99999998
Q ss_pred Cce----eEEeecCCCCeEEEEEccCCCEEEEeC--C----eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 149 GSL----LGKFRASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 149 ~~~----~~~~~~~~~~v~~l~~~p~~~~l~~~~--g----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
++. +.....+...+..+.|+|+|++|+.++ + .|++|+..++. ...+..+...+....| ++|. ++..+
T Consensus 212 ~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 212 EPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp CGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred CchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEE
Confidence 762 222333445788999999999888765 4 67888765554 4455556666666666 6777 55555
Q ss_pred eC---CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 219 VG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 219 ~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.. ++.|.+|++.++.......+. ..+....+..+.+. ++.++++...||..+||.+.
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 289 DEGAPRQRVFEVDPAKPARASWKEIV-PEDSSASLLSVSIV------GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CTTCTTCEEEEEBTTBCSGGGCEEEE-CCCSSCEEEEEEEE------TTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCEEEEEeCCCCCccCCeEEe-cCCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence 32 478999999776431111121 12223344444443 46778888889988888654
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.45 E-value=6e-12 Score=139.43 Aligned_cols=237 Identities=8% Similarity=-0.035 Sum_probs=148.3
Q ss_pred eEeEECCCCCEEEE-----eeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAI-----CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..++|||||++||. |+.+.+|++||+.+|+.+. ..+... .....+.|.+.
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~----------------~~~~~~~wspD------- 178 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEG----------------GKYATPKWTPD------- 178 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSC----------------CTTCCCEECTT-------
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCc----------------ccccceEEecC-------
Confidence 45599999999994 3445789999999987641 000000 01134566654
Q ss_pred cCCcEEEEEeCCCe-------------EEEEEccCCee---eEEccCCCCCCEEEEEEecCCCEEEEEeCCC----cEEE
Q 006808 84 LGSSLLVLGTGGGD-------------VLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCE 143 (630)
Q Consensus 84 ~~~~~l~~~~~~g~-------------v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg----~v~i 143 (630)
++.|+.++.+.. |++|++.++.. +..-...|...+.++.|+|+|++|+.++.++ .|++
T Consensus 179 --g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 --SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp --SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred --CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 667888777654 99999988762 1112234556889999999999988777665 6777
Q ss_pred EeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCce--eeEeecC--CCCeEEEEEeeCCcEE
Q 006808 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKFSGH--PGAVRFMTFSDNGKYV 214 (630)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~--~~~~~~h--~~~v~~l~~sp~~~~l 214 (630)
|+..+++ ...+..+...+....+ |+|.+++.+. +.|.+||+.++.. ...+..| ...+..++|+ ++..+
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7765554 3445555555666666 5666545443 5899999987653 2344333 4457888888 55555
Q ss_pred EEEeeCCCeEEEEEcCC-CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec----CCcEEEEEcCCcc
Q 006808 215 LSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----TGVCYIWYGQNIE 285 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~ 285 (630)
++.. .|+..++|.+.. +... ....+.. ...+....++ |++..++.... .+.|++||+.+++
T Consensus 334 ~~~~-~dg~~~l~~~~~~g~~~---~~l~~~~-~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 334 LEYL-KDATSEVRVATLKGKPV---RTVQLPG-VGAASNLMGL-----EDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEE-ETTEEEEEEEETTCCEE---EECCCSS-SSEECCCBSC-----TTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEE-ECCEEEEEEEeCCCCee---EEecCCC-CeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 5554 688888776542 2211 1112221 2233334444 78877664332 4689999998765
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.45 E-value=2e-11 Score=120.05 Aligned_cols=190 Identities=8% Similarity=-0.028 Sum_probs=130.9
Q ss_pred eeeEEecccccccccccCCc-EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~-~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
...++|.+. ++ +++++..++.|..|+..++ ...+ ..+...+.+++++|+|+++++...++.|.+||.
T Consensus 30 ~eg~~~d~~---------g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 30 TEGPVYVPA---------RSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEEEEEGG---------GTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred ccCCeEeCC---------CCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 345667654 44 7888888999999999988 3233 246678999999999998777777789999999
Q ss_pred CCCceeEEeecC----CCCeEEEEEccCCCEEEEeC-------------------CeEEEEECCCCceeeEeecCCCCeE
Q 006808 147 LTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVR 203 (630)
Q Consensus 147 ~~~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v~ 203 (630)
.+++........ ...+..++++|+|+++++.+ +.|+.++.. ++ +..+..+.....
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN 175 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence 888764433221 12457899999999888621 356666654 44 444555667789
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEcC-CCcc-ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRTD-GVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.++|+|+++.+ .+...++.|++|++. .+.. . ....+ .........+++. ++|.+.++. ++.|.+|+.
T Consensus 176 gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~-~~~~~--~~~~~~p~~i~~d-----~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSDTGDNATHRYCLNARGETEY-QGVHF--TVEPGKTDGLRVD-----AGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEEECTTSCEE-EEETTTTEEEEEEECSSSCEEE-EEEEE--CCSSSCCCSEEEB-----TTSCEEEEE--TTEEEEECT
T ss_pred cEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcC-CCeEe--eCCCCCCCeEEEC-----CCCCEEEEc--CCeEEEECC
Confidence 99999999998 444468899999997 3332 1 01122 1122233455665 888866655 788999986
Q ss_pred C
Q 006808 282 Q 282 (630)
Q Consensus 282 ~ 282 (630)
.
T Consensus 245 ~ 245 (296)
T 3e5z_A 245 D 245 (296)
T ss_dssp T
T ss_pred C
Confidence 4
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.43 E-value=5e-11 Score=119.01 Aligned_cols=223 Identities=10% Similarity=0.025 Sum_probs=150.8
Q ss_pred CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEcc
Q 006808 25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS 104 (630)
Q Consensus 25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~ 104 (630)
.++.|.+||..+++....+.... .. ...+.....+.+. + +.+.++...++.|.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~---n~---------~~lg~~~~~i~~~--~--------~~lyv~~~~~~~v~viD~~ 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA---NG---------FKLGDVAQSMVIR--D--------GIGWIVVNNSHVIFAIDIN 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH---HS---------SCCBSCEEEEEEE--T--------TEEEEEEGGGTEEEEEETT
T ss_pred CCceEEEEECCCCEEhhhhHhhh---cC---------cccCccceEEEEE--C--------CEEEEEEcCCCEEEEEECc
Confidence 37899999999998765442100 00 0011112223321 1 4455555567899999999
Q ss_pred CCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEEeecCC-----CCeEEEEEccCCCEEEEe-
Q 006808 105 AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST-----KGISCMAVSSDGKMLATA- 177 (630)
Q Consensus 105 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~~~l~~~- 177 (630)
+++.+.++. ....+..+++++++ .++.+. .++.|.+||..+++....+.... .....+++ .++..+++.
T Consensus 73 t~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~ 148 (328)
T 3dsm_A 73 TFKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW 148 (328)
T ss_dssp TCCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred ccEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence 999887773 34678999999998 455554 88999999999999887776543 14566777 455555553
Q ss_pred --CCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC----------CeEEEEEcCCCccccceeeeeecC
Q 006808 178 --AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 178 --~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
++.|.+||+.+++.+.++... .....+.++|+|++++++. .+ +.|.+||..+++.. .......
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~v~---~~~~~~~ 223 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFTVE---KQFKFKL 223 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTEEE---EEEECCT
T ss_pred CCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCeEE---EEEecCC
Confidence 278999999999988877643 3456889999998766654 34 68999999887633 1222221
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
......++++ |++++|.++.. .|.+||..+++.
T Consensus 224 -g~~p~~la~~-----~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 224 -GDWPSEVQLN-----GTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp -TCCCEEEEEC-----TTSCEEEEESS--SEEEEETTCSSC
T ss_pred -CCCceeEEEe-----cCCCEEEEEcc--EEEEEECCCCce
Confidence 1234456665 88998888765 899999877654
No 194
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=7e-11 Score=117.00 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=151.7
Q ss_pred EeEECCCCCEEEE-------eeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 10 LTSFSPALDYFAI-------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 10 ~~~fs~dg~~las-------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++|+++|.++++ +..++.|.+||..+++... +.... ..++ ...+..+.+.+.
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~------------~~~~-~~~~~~i~~~~~------ 81 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPE------------VNGY-GGIPAGCQCDRD------ 81 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCE------------ETTE-ECCEEEEEECSS------
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecc------------cCCC-CCCCceEEEecC------
Confidence 4589999988888 6778999999988877643 21100 0011 112345555443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEc-cC---C-CCCCEEEEEEecCCCEEEEEeCC---------------CcEE
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SD---C-HPGGVSAISFATHGSCIYSAGAD---------------GMVC 142 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~-~~---~-h~~~v~~~~~s~~g~~l~s~~~d---------------g~v~ 142 (630)
+..+++++..+.|.+||.. ++.. .+ .. + ....+.++++.++|+.+++...+ +.|.
T Consensus 82 ---~g~l~v~~~~~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 82 ---ANQLFVADMRLGLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ---SSEEEEEETTTEEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred ---CCcEEEEECCCCEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 1346666666689999998 6654 22 21 1 12358899999999877776655 5688
Q ss_pred EEeCCCCceeEEeecCCCCeEEEEEc----cCCCEEEEe-C--CeEEEEECC-CCc-----eeeEeecCC-CCeEEEEEe
Q 006808 143 EIDPLTGSLLGKFRASTKGISCMAVS----SDGKMLATA-A--GQLKTFNCS-DHK-----KMQKFSGHP-GAVRFMTFS 208 (630)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v~~l~~~----p~~~~l~~~-~--g~i~lwd~~-~~~-----~~~~~~~h~-~~v~~l~~s 208 (630)
.||.. ++...... +......++|+ |+++.++++ . +.|++|++. +++ ....+.++. ..+..++++
T Consensus 157 ~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 157 CFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 88865 55433322 33456889999 999765554 3 789999976 443 222334443 567889999
Q ss_pred eCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCC
Q 006808 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN 283 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~ 283 (630)
++|+.+++.. .++.|.+|+..+++.. ... ..+...+..+++. |++.+|.++ ..++.|..|+...
T Consensus 235 ~~G~l~v~~~-~~~~i~~~d~~~g~~~---~~~--~~~~~~~~~i~~~-----~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANW-GSSHIEVFGPDGGQPK---MRI--RCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEE-TTTEEEEECTTCBSCS---EEE--ECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEc-CCCEEEEEcCCCCcEe---EEE--eCCCCCceeEEEC-----CCCCEEEEEeCCCCeEEEEeCCC
Confidence 9998777665 5789999998765532 122 2222344555666 899855554 4568899998754
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.40 E-value=5.1e-10 Score=109.70 Aligned_cols=232 Identities=8% Similarity=-0.017 Sum_probs=153.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++++++|+++++...++.|.+||.. +.... +.... . ...+..+++.+. +.+
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~---------------~-~~~~~~i~~~~~---------g~l 70 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPT---------------P-DAKVMCLTISSD---------GEV 70 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCc---------------c-cCceeeEEECCC---------CCE
Confidence 455999999987776667899999987 55432 22100 0 112334444432 555
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (630)
.++...++.|..|+.. +.............+.++++.++|..+++...++.|..||. +++.... .......+.++++
T Consensus 71 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 71 WFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL 148 (299)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence 5555557889999987 33321111224567899999999988777777889999998 5554332 2223457899999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
.|+|.++++.. +.|..||. +++.... +..+...+.+++++++|..+++.. .++.|.+|+. ++... .....
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~ 221 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEIT----EFKIP 221 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEE----EEECC
Confidence 99998887765 78999998 6654432 233445688999999998665544 5788999998 55422 12222
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.....+..+.+. ++|...++...++.|.+||.
T Consensus 222 ~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 222 TPNARPHAITAG-----AGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp STTCCEEEEEEC-----STTCEEEEETTTTEEEEEET
T ss_pred CCCCCceeEEEC-----CCCCEEEeccCCceEEEECC
Confidence 222334455665 78886666657789999987
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.36 E-value=4.2e-10 Score=110.58 Aligned_cols=200 Identities=17% Similarity=0.154 Sum_probs=131.5
Q ss_pred eeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
....|.+.+ +.++++...++.|+.||..++... .+ .+...+.+++++++|+++++ . ++.|.+||..+
T Consensus 16 Egp~w~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 16 ESPVWEEVS--------NSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp EEEEEETTT--------TEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred cCCeEECCC--------CEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 356676653 566777777889999999987653 22 24467999999999995444 4 56799999988
Q ss_pred CceeEEeecC----CCCeEEEEEccCCCEEEEeC-------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC
Q 006808 149 GSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 149 ~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 211 (630)
++........ ...+..++++|+|+++++.. +.|+.++.. ++.. .+..+......++|+|++
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTS
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCC
Confidence 7654333221 23578899999999777652 244444442 3332 233344456899999999
Q ss_pred cEEEEEeeCCCeEEEEEcC--CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 212 KYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
+.|+.+.+.++.|.+|++. ++..........+.........+++. ++|.+.++....+.|..||..+++.+.
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-----~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-----AEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-----TTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-----CCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 9887776667899999974 44321111122222222344556665 888877777777889999987776543
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.36 E-value=1.3e-09 Score=106.78 Aligned_cols=233 Identities=8% Similarity=0.022 Sum_probs=147.4
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..++++++|.++++...++.|..|+.. +.. ..+.... .......+++.+. +.+
T Consensus 60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~----------------~~~~~~~i~~~~~---------g~l 112 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN----------------PDSAPYGITEGPN---------GDI 112 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS----------------TTCCEEEEEECTT---------SCE
T ss_pred eeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC----------------cCCCceeeEECCC---------CCE
Confidence 455899999988877768889999976 443 2222100 0112334444332 555
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (630)
+++...++.|.+||. ++.........+...+.++++.++|..+++...++.|..||. +++.... +......+.++++
T Consensus 113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 190 (299)
T 2z2n_A 113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITK 190 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEE
Confidence 555556788999998 555443322334567899999999987777767789999998 6665432 2333456889999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
+++|.++++.. +.|.+||. +++.... ...+...+.+++++++|+.+++.. .++.|..|+.. +... .+...
T Consensus 191 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~~-g~~~----~~~~~ 263 (299)
T 2z2n_A 191 GNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTSN-NIIE----EYPIQ 263 (299)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEETT-TEEE----EEECS
T ss_pred CCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc-CCceEEEECCC-CceE----EEeCC
Confidence 99998777764 78999998 6654322 233456789999999998655543 47889999983 3311 22222
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
........+.+ ++|.+.++.+ .+.+..++..+.
T Consensus 264 ~~~~~~~~i~~------~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 264 IKSAEPHGICF------DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSSCCEEEEEE------CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCCccceEEe------cCCCEEEEec-CCcEEEEEcCcc
Confidence 21222233333 3566555544 567777776554
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=1.7e-09 Score=109.43 Aligned_cols=186 Identities=8% Similarity=-0.104 Sum_probs=123.3
Q ss_pred EECCCCCEEEEeeC--CC---cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 12 SFSPALDYFAICSG--DA---RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 12 ~fs~dg~~las~s~--dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
...|+++++.++.. .+ +|.+||..+++.+..+..... . .+.++|+ +
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~-p-~i~~spD---------------------------g 77 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-P-NPVAAHS---------------------------G 77 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC-C-CeEECCC---------------------------C
Confidence 45688887776653 22 889999999998877764322 1 4555554 6
Q ss_pred cEEEEEe----------CCCeEEEEEccCCeeeEEccCC------CCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCC
Q 006808 87 SLLVLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLT 148 (630)
Q Consensus 87 ~~l~~~~----------~~g~v~iwd~~~~~~~~~~~~~------h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~ 148 (630)
+.++++. .++.|.+||+.+.+.+.++..+ +......+.|+|+|++|+++.. ++.|.++| .+
T Consensus 78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t 156 (373)
T 2mad_H 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG 156 (373)
T ss_pred CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence 6777775 3567999999988876655322 0123568999999999998874 57899999 99
Q ss_pred CceeEE-eecCCCCeEEEEEccCCCE-EEEeC--CeEEEEECCCCceeeEee-----cCCCC-eEEEEEeeCCcEEEEEe
Q 006808 149 GSLLGK-FRASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFS-----GHPGA-VRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 149 ~~~~~~-~~~~~~~v~~l~~~p~~~~-l~~~~--g~i~lwd~~~~~~~~~~~-----~h~~~-v~~l~~sp~~~~l~~~~ 218 (630)
++.+.. +.... ++.+.|++.. +++.+ |.+.++|. +++...... ....+ .....|.+++..++..+
T Consensus 157 ~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 231 (373)
T 2mad_H 157 GSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV 231 (373)
T ss_pred CCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence 998877 65322 2445565532 23322 89999999 877653321 11122 23356777766555555
Q ss_pred eCCCeEEEEEcCCCc
Q 006808 219 VGERYIALWRTDGVK 233 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~ 233 (630)
..+.+.+.|+....
T Consensus 232 -~~~~v~vid~~~~~ 245 (373)
T 2mad_H 232 -YSGKILQADISAAG 245 (373)
T ss_pred -CCceEEEEeccCCc
Confidence 47889999987653
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.34 E-value=1.6e-10 Score=128.84 Aligned_cols=236 Identities=11% Similarity=0.025 Sum_probs=144.5
Q ss_pred eEeEECCCCCEEEEeeCC-----CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGD-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
...+|||||++||.++.+ .+|++||+.+|+.+.... .. .....+.|.+. .
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~------------------~~~~~~~wspD-~----- 220 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KW------------------VKFSGLAWLGN-D----- 220 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EE------------------EESCCCEESTT-S-----
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CC------------------ceeccEEEECC-C-----
Confidence 345999999999987653 469999999998754311 00 01124556553 2
Q ss_pred cCCcEEEEEeCCC--------------eEEEEEccCCee--eEEc-cCCCCCCEEEEEEecCCCEEEEEeCCC-----cE
Q 006808 84 LGSSLLVLGTGGG--------------DVLALAVSAGQL--KWRL-SDCHPGGVSAISFATHGSCIYSAGADG-----MV 141 (630)
Q Consensus 84 ~~~~~l~~~~~~g--------------~v~iwd~~~~~~--~~~~-~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~v 141 (630)
.|+.++.++ .|++|++.++.. ...+ ...+...+.++.|+|||++|+..+.++ .|
T Consensus 221 ----~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 221 ----ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTV 296 (741)
T ss_dssp ----EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred ----EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence 245554433 389999987752 1111 123444689999999999988776543 89
Q ss_pred EEEeCCCC--ceeEEeecCCCCeEEEEEccCCCEEEEeC------CeEEEEECCCC--ceeeEeecCCCCeEEEEEeeCC
Q 006808 142 CEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 142 ~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~~ 211 (630)
++||+.++ ++...+..+...+.... +|+|..|+..+ +.|.+||+.++ .....+..+...+..+.|+ ++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~ 374 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN 374 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred EEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence 99999877 42455555555555543 48888777664 46999999875 3333344455556677777 44
Q ss_pred cEEEEEeeCCCeEEEEEcC-CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEE-e---cCCcEEEEEcCCcc
Q 006808 212 KYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCYIWYGQNIE 285 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s---~dg~i~iwd~~~~~ 285 (630)
..+++.. .|+..++|.+. .+... ....+.. ...+....++ |++..|+.. + ..+.|++||+.+++
T Consensus 375 ~lv~~~~-~dg~~~l~~~~~~g~~~---~~l~~~~-~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 375 RLFASYI-HDAKSQVLAFDLDGKPA---GAVSLPG-IGSASGLSGR-----PGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSCEE---EECBCSS-SCEEEEEECC-----BTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEE-ECCEEEEEEEeCCCCce---eeccCCC-CeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4444444 68877777554 22211 1122222 2234444454 777655533 2 24789999998775
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.34 E-value=6.4e-10 Score=114.27 Aligned_cols=233 Identities=11% Similarity=0.021 Sum_probs=148.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..++|+|+|+++++...++.|++||..++......... . ... ++|.+. +..
T Consensus 134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~------------------~~~-ia~~~~---------g~~ 184 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-K------------------GGK-PAVTKD---------KQR 184 (409)
T ss_dssp EEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-C------------------BCB-CEECTT---------SSE
T ss_pred eEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-C------------------CCc-eeEecC---------CCc
Confidence 45699999998888777899999999887765543321 0 111 444443 667
Q ss_pred EEEEeCCC--eEEEEEccCCeeeEEc---cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE----eecCC
Q 006808 89 LVLGTGGG--DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRAST 159 (630)
Q Consensus 89 l~~~~~~g--~v~iwd~~~~~~~~~~---~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~ 159 (630)
|+++..++ .|.+|+...+.....+ ...+...+.+++++|++..|+.+..++.|+.||..++..... ..+..
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence 77777765 7999998776543222 111445678999999656666677888999999987753322 12222
Q ss_pred CCe-E-EEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCC---------------CCeEEEEEeeCCcEEEEEee
Q 006808 160 KGI-S-CMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHP---------------GAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 160 ~~v-~-~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~---------------~~v~~l~~sp~~~~l~~~~~ 219 (630)
..- . .++|+|+ +.++++-. +.|+.|+.... +..+.++. .....++|+|+|+ |+++..
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~ 341 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG 341 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET
T ss_pred CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC
Confidence 222 3 9999995 54444444 79999987543 33343332 3478999999998 445554
Q ss_pred -CCCeEEEEEcCCCccccceeeeeecC------------CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 220 -GERYIALWRTDGVKKQSASCVLAMEH------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 220 -~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.++.|+.|++..+... .+..... .-.....+++. ++|.++++-..+++|+.+++
T Consensus 342 ~~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd-----~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYD-----GEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEEC-----SSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEc-----CCCCEEEEECCCCeEEEEEe
Confidence 5789999997666532 1111000 01123445554 77777777777778877654
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.33 E-value=1.8e-09 Score=109.29 Aligned_cols=241 Identities=12% Similarity=0.089 Sum_probs=151.7
Q ss_pred eEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
++|||||++++++. .++.|.+||..+++.+.++........ ........+.|.|.
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~-----------~~g~~p~~~~~spD---- 135 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-----------DVGPYSWMNANTPN---- 135 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc-----------ccCCCccceEECCC----
Confidence 49999999998875 367899999999888877653200000 00001113344443
Q ss_pred ccccCCcEEEEEeC--CCeEEEEEccCCeeeEE-ccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 81 ~~~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+++|+++.. ++.|.++| .+++.+.. +.. .. ++.+.|+++ .+++.+.||.+.+||. +++......
T Consensus 136 -----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 136 -----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred -----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 777888774 47799999 99988766 532 12 245556553 4667778999999999 887764322
Q ss_pred -----cCCCCe-EEEEEccCCCEE-EEeC-CeEEEEECCCCc--eeeEeec----------CCCCeEEEEEeeCCcEEEE
Q 006808 157 -----ASTKGI-SCMAVSSDGKML-ATAA-GQLKTFNCSDHK--KMQKFSG----------HPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 157 -----~~~~~v-~~l~~~p~~~~l-~~~~-g~i~lwd~~~~~--~~~~~~~----------h~~~v~~l~~sp~~~~l~~ 216 (630)
....++ ....+.+++..+ ++.. +.+.+.|+.++. .+..+.- .......+.++|+++.+++
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV 283 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence 112221 234566655443 3333 899999987653 2233221 1123445788999998887
Q ss_pred Eee---------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEe-cCCcEEEEEcCCcc
Q 006808 217 SAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIE 285 (630)
Q Consensus 217 ~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~dg~i~iwd~~~~~ 285 (630)
+.. ..+.|.++|+.+.+.. .....+. ....+.++ |||+ +++++. .++.|.+||..+++
T Consensus 284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv---~~i~~g~---~p~~i~~s-----~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS---SQISLGH---DVDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EeccCCcccccCCCCeEEEEECCCCEEE---EEEECCC---CcCeEEEC-----CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 652 1357999999887643 1222222 23344555 9999 777777 48999999999988
Q ss_pred cccc
Q 006808 286 ELRN 289 (630)
Q Consensus 286 ~~~~ 289 (630)
.++.
T Consensus 353 vv~~ 356 (373)
T 2mad_H 353 QDQS 356 (373)
T ss_pred EEee
Confidence 7655
No 202
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=2.5e-10 Score=126.18 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=148.7
Q ss_pred EeEECCCCCEEEEee-----CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.++|||||++||.+. ...+|+|||+.+|+.+.... . ......+.|. .
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~-----------------~~k~~~~~Ws-D-------- 184 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--K-----------------DVKFSGISWL-G-------- 184 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--E-----------------EEESCCCEEE-T--------
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--C-----------------CceeccEEEe-C--------
Confidence 348999999999543 23579999999998654211 0 0011244566 3
Q ss_pred CCcEEEEEeCCC-------------eEEEEEccCCee---eEEccCC-CCCCEEEEEEecCCCEEEEEeC----CCcEEE
Q 006808 85 GSSLLVLGTGGG-------------DVLALAVSAGQL---KWRLSDC-HPGGVSAISFATHGSCIYSAGA----DGMVCE 143 (630)
Q Consensus 85 ~~~~l~~~~~~g-------------~v~iwd~~~~~~---~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~----dg~v~i 143 (630)
++.|+.++.+. .|++|++.++.. ...-... |...+.++.|+|||++|+.... ...|++
T Consensus 185 -g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 -NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp -TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred -CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 55566666653 399999987653 1111123 4556889999999998754432 248999
Q ss_pred EeCCCCc-eeEEeecCCCCeEEEEEccCCCEEE-EeC-----CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEE
Q 006808 144 IDPLTGS-LLGKFRASTKGISCMAVSSDGKMLA-TAA-----GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 144 wd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~-~~~-----g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l 214 (630)
||+.++. ....+..+....... |+++|..|+ .+. +.|..+++.++.. ...+..|...+. .|++++++|
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9998764 445566565555554 666665554 433 4799999988754 355666666655 899999998
Q ss_pred EEEeeCCC--eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC----CcEEEEEcCCcc
Q 006808 215 LSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET----GVCYIWYGQNIE 285 (630)
Q Consensus 215 ~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~ 285 (630)
+.+...++ .|++|++..+... ...+..... +....++ +++..|+....+ +.++.||+.+++
T Consensus 341 v~~~~~~g~~~l~~~d~~g~~~~----~l~~p~~~~-~~~~~~~-----~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 341 FAEYMVDATARVEQFDYEGKRVR----EVALPGLGS-VSGFNGK-----HDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEETTEEEEEEECTTSCEEE----EECCSSSSE-EEECCCC-----TTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCeeEEEEEECCCCeeE----EeecCCCce-EEeeecC-----CCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 88775555 6888988754321 222223222 2222233 677766655544 789999987764
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=4.1e-10 Score=112.60 Aligned_cols=239 Identities=13% Similarity=0.135 Sum_probs=156.9
Q ss_pred eEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccc-------cccccccccccccccccccceeeEEe
Q 006808 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
+++||||+++++++ .++.|.+||..+++.+.++.-.. .....+.++++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD--------------- 147 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD--------------- 147 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT---------------
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC---------------
Confidence 49999999887765 36789999999999988875321 12333444444
Q ss_pred cccccccccccCCcEEEEEeC--CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-Cc
Q 006808 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GS 150 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~ 150 (630)
+++++++.. ++.|.++|+.+++.+.++... + . ...+....+.+++.+.||.+.+.++.+ ++
T Consensus 148 ------------Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 148 ------------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECC--S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred ------------CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--C-c-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 777787764 578999999999998777432 1 1 233433456777888899999999876 55
Q ss_pred eeEEeecC----CCCeE-EEEE-ccCCCEEEEeC-CeEEEEECCCCc--eeeEee---------c-CCCCeEEEEEeeCC
Q 006808 151 LLGKFRAS----TKGIS-CMAV-SSDGKMLATAA-GQLKTFNCSDHK--KMQKFS---------G-HPGAVRFMTFSDNG 211 (630)
Q Consensus 151 ~~~~~~~~----~~~v~-~l~~-~p~~~~l~~~~-g~i~lwd~~~~~--~~~~~~---------~-h~~~v~~l~~sp~~ 211 (630)
.......+ ..++. ...| .++|+++++.. |.|++.|..++. .+..+. + .......++++|++
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 43322111 12222 2456 46887666555 999999997654 232222 0 12234457889999
Q ss_pred cEEEEEeeC---------CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEe-cCCcEEEEE
Q 006808 212 KYVLSSAVG---------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY 280 (630)
Q Consensus 212 ~~l~~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~dg~i~iwd 280 (630)
+.+++.... .+.|.++|+.+.+.. .....++ ....+.++ +|++ +|++++ .++.|.++|
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~---~~i~vg~---~~~~lavs-----~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---AKFEMGH---EIDSINVS-----QDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEEEE---EECEEEEC-----SSSSCEEEEEETTTTEEEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEE---EEEECCC---CcceEEEC-----CCCCeEEEEEcCCCCeEEEEE
Confidence 888876421 247999999998754 2222222 23345555 8886 666655 489999999
Q ss_pred cCCcccccccC
Q 006808 281 GQNIEELRNTK 291 (630)
Q Consensus 281 ~~~~~~~~~~~ 291 (630)
..+++.+++.+
T Consensus 361 ~~t~k~~~~i~ 371 (386)
T 3sjl_D 361 AESGEELRSVN 371 (386)
T ss_dssp TTTCCEEEEEC
T ss_pred CCCCcEEEEec
Confidence 99998876654
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.31 E-value=1e-09 Score=108.57 Aligned_cols=191 Identities=10% Similarity=0.081 Sum_probs=123.3
Q ss_pred CcEEEE-------EeCCCeEEEEEccCCeeeEEcc---CCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEE
Q 006808 86 SSLLVL-------GTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 86 ~~~l~~-------~~~~g~v~iwd~~~~~~~~~~~---~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (630)
+.++++ ++.++.|.+||+.+++...... .++...+.+++++++ |+ ++.++..+.|.+||.. ++....
T Consensus 29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~ 106 (314)
T 1pjx_A 29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEI 106 (314)
T ss_dssp SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEEC
T ss_pred CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEE
Confidence 555555 4778899999988887642221 124467999999999 65 4444444579999988 665433
Q ss_pred -eecC----CCCeEEEEEccCCCEEEEeC-----------------CeEEEEECCCCceeeEeecCCCCeEEEEEe----
Q 006808 155 -FRAS----TKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS---- 208 (630)
Q Consensus 155 -~~~~----~~~v~~l~~~p~~~~l~~~~-----------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s---- 208 (630)
.... ...+.+++++|+|+++++.. +.|..|+.. ++... +..+......++|+
T Consensus 107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d 184 (314)
T 1pjx_A 107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMND 184 (314)
T ss_dssp CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTT
T ss_pred EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccC
Confidence 2211 23578999999998887765 256677765 54433 33344456889999
Q ss_pred eCCcEEEEEeeCCCeEEEEEcC-CCccccceeeeeecCCc-eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 209 DNGKYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
|+++.++++...++.|.+|++. .+..........+.... .....+++. ++|.++++...++.|.+||..+++
T Consensus 185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-----~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-----CCCCEEEEEcCCCEEEEEcCCCCc
Confidence 9998777765567899999986 33211111111222221 234445665 888888887788899999876554
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.30 E-value=2.6e-10 Score=127.17 Aligned_cols=194 Identities=11% Similarity=-0.001 Sum_probs=124.6
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCC-C----eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCc-
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM- 140 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~-g----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~- 140 (630)
.+..+.|.|. ++.|+.+..+ | .|++||+.+++.+.... +...+.+++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~~SPD---------G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~ 231 (741)
T 1yr2_A 164 ALDAWAASDD---------GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPK 231 (741)
T ss_dssp EEEEEEECTT---------SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC-
T ss_pred EEEeEEECCC---------CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcc
Confidence 4556677754 5666665543 3 49999999998754321 1122357899999 88888776554
Q ss_pred -------------EEEEeCCCCce--eEEeec--CCCCeEEEEEccCCCEEEEeC--C-----eEEEEECCCC--ceeeE
Q 006808 141 -------------VCEIDPLTGSL--LGKFRA--STKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDH--KKMQK 194 (630)
Q Consensus 141 -------------v~iwd~~~~~~--~~~~~~--~~~~v~~l~~~p~~~~l~~~~--g-----~i~lwd~~~~--~~~~~ 194 (630)
|++|++.+++. ...+.. +...+..+.|+|||++|+..+ + .|++||+.++ ++...
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 311 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA 311 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence 89999987753 223333 223588999999999888765 2 8999999877 32455
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeC---CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
+..+...+.... +|+|..|+..+.. .+.|.+|++.++. .. ......+....+..+.+. ++.++++..
T Consensus 312 l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~~~l~~~~~~------~~~lv~~~~ 381 (741)
T 1yr2_A 312 LIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESKDNLESVGIA------GNRLFASYI 381 (741)
T ss_dssp EECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCSSEEEEEEEE------BTEEEEEEE
T ss_pred ecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCCCeEEEEEEE------CCEEEEEEE
Confidence 655655555553 5889888887632 3459999987742 10 111223333334333332 456777888
Q ss_pred cCCcEEEEEcC
Q 006808 272 ETGVCYIWYGQ 282 (630)
Q Consensus 272 ~dg~i~iwd~~ 282 (630)
.+|..+||...
T Consensus 382 ~dg~~~l~~~~ 392 (741)
T 1yr2_A 382 HDAKSQVLAFD 392 (741)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 89987777543
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.29 E-value=4.7e-09 Score=102.76 Aligned_cols=232 Identities=10% Similarity=0.036 Sum_probs=151.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++++++|+++++...++.|.+||.. ++... +... .. ......+++.+. +.+
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~---------------~~-~~~~~~i~~~~~---------g~l 75 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP---------------TP-DAKVMCLIVSSL---------GDI 75 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS---------------ST-TCCEEEEEECTT---------SCE
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC---------------CC-CCcceeEEECCC---------CCE
Confidence 455899999988877778999999987 65443 2110 00 112334444322 555
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (630)
.++...++.|..||.. ++............+.++++.++|+.+++...++.|..||.. ++.... +......+.++++
T Consensus 76 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 76 WFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL 153 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence 5555557889999988 554322222234679999999999887777668899999987 654422 2323457899999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
.|+|+++++.. +.|..|+. +++.... ...+...+.++++.++|..+++.. ..+.|.+|+. .+... .....
T Consensus 154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~ 226 (300)
T 2qc5_A 154 GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEIS----EYDIP 226 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEE----EEECC
Confidence 99999777664 68999998 5554331 223445688999999997665544 4678999998 33322 11222
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
........+++. ++|...++...++.|..|+.
T Consensus 227 ~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 227 TPNARPHAITAG-----KNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEEC-----STTCEEEEETTTTEEEEECT
T ss_pred CCCCCceEEEEC-----CCCCEEEeccCCCeEEEECC
Confidence 222334455565 78886666656788999986
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.29 E-value=2.5e-10 Score=110.30 Aligned_cols=194 Identities=8% Similarity=-0.026 Sum_probs=131.2
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++++++|+++++.. ++.|.+||..++... .+... + ......+++.+. +.++
T Consensus 71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~---------------~--~~~p~~i~~~~~---------g~l~ 122 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFD---------------G--LNYPEGLAVDTQ---------GAVY 122 (270)
T ss_dssp CEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCC---------------S--CSSEEEEEECTT---------CCEE
T ss_pred eeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecC---------------C--cCCCcceEECCC---------CCEE
Confidence 459999999666665 889999998755432 22110 0 012334454432 5556
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
++...++.|.+|+..+....... ......+.+++++++|+.+++...++.|.+||............+...+.+++++|
T Consensus 123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 201 (270)
T 1rwi_B 123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE 201 (270)
T ss_dssp EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT
T ss_pred EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC
Confidence 66667788999986655443222 22334678999999998777776788999999877655433333335789999999
Q ss_pred CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+|.++++.. +.|.+|+............+...+.+++++|+|+.+++.. .++.|+++++...+
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG-GGTEEEEECCCGGG
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC-CCCEEEEEcCCCcc
Confidence 997777764 7899999866543322223335689999999998655554 68999999987754
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.26 E-value=1.7e-09 Score=108.14 Aligned_cols=276 Identities=14% Similarity=0.016 Sum_probs=164.3
Q ss_pred CcEEEEEeC-----CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCc
Q 006808 86 SSLLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS 150 (630)
Q Consensus 86 ~~~l~~~~~-----~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~dg~v~iwd~~~~~ 150 (630)
+..+++... ++.|.++|..+++.+.++..+.. + . ++++|+|+++++++ .++.|.+||..+++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 666777765 57899999999999877765433 3 4 99999999988775 36789999999999
Q ss_pred eeEEeecCC-------CCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 151 LLGKFRAST-------KGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 151 ~~~~~~~~~-------~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
.+.++.... .....++|+|||++++++. +.|.++|+.+++.+.++.... + ...+....+.+++.+
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~- 196 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHC- 196 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEE-
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEEC-
Confidence 988876432 2456799999999888764 689999999999988885322 1 223333345555655
Q ss_pred CCCeEEEEEcCC-Cccccceeeeeec-CCcee-eeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc--cccccC---
Q 006808 220 GERYIALWRTDG-VKKQSASCVLAME-HPAVF-MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--ELRNTK--- 291 (630)
Q Consensus 220 ~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~--- 291 (630)
.||.+.+.++.. ++... .....+. ..... ....+.. ++|++++ .+.+|.++++|..+.. .+....
T Consensus 197 ~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~-----~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQ-----KAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp TTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEET-----TTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred CCCCEEEEECCCCCeEEE-eecceeccccccccccceeEc-----CCCcEEE-EeCCCEEEEEECCCCcceeecceeccc
Confidence 688888888876 33210 0000111 00111 1111112 5775554 5668999999986553 222111
Q ss_pred c----eeEEee--ccCCCcccccchhhhhhhccccc---cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc
Q 006808 292 A----TKILSS--SEDVNSKSQKSATAAIFAAKLQD---IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV 362 (630)
Q Consensus 292 ~----~~~~~~--~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (630)
. ..+... ....+.++++ .++.+..++ .-+.....+++.+- .....+..+..- ...+++++++||+
T Consensus 270 ~~~~~~g~~p~g~q~~a~~~~~~----~lyV~~~~~~~~~hk~~~~~V~viD~-~t~kv~~~i~vg-~~~~~lavs~D~~ 343 (386)
T 3sjl_D 270 EAERADGWRPGGWQQVAYHRALD----RIYLLVDQRDEWRHKTASRFVVVLDA-KTGERLAKFEMG-HEIDSINVSQDEK 343 (386)
T ss_dssp HHHHHTTEEECSSSCEEEETTTT----EEEEEEEECCTTCTTSCEEEEEEEET-TTCCEEEEEEEE-EEECEEEECSSSS
T ss_pred cccccccccCCCcceeeECCCCC----eEEEEeccccccccCCCCCEEEEEEC-CCCeEEEEEECC-CCcceEEECCCCC
Confidence 0 000000 0011233333 444433211 11111234555553 333444444332 2678999999997
Q ss_pred -eeeccccceeccccceecc
Q 006808 363 -LLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 363 -~l~~s~s~d~~~~~w~~~~ 381 (630)
.|.++...++++.+.+...
T Consensus 344 ~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 344 PLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp CEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEcCCCCeEEEEECCC
Confidence 5525455577777777643
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=6.5e-11 Score=118.86 Aligned_cols=183 Identities=8% Similarity=0.068 Sum_probs=126.7
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+++.+ ++++...++++|+.+ .++||++.+..... ...... +.+.....+ .. ++.++| +
T Consensus 39 ~~nlL--ais~~~gll~a~~~~-~l~v~~~~~l~~~~--~~~~~~-----~~~~~~~~l-p~-V~~l~f---d------- 96 (388)
T 1xip_A 39 SLQNL--DISNSKSLFVAASGS-KAVVGELQLLRDHI--TSDSTP-----LTFKWEKEI-PD-VIFVCF---H------- 96 (388)
T ss_dssp CCBCE--EEETTTTEEEEEETT-EEEEEEHHHHHHHH--HSSSCC-----CCCSEEEEC-TT-EEEEEE---E-------
T ss_pred cccEE--EEcCCCCEEEEeCCC-EEEEEEhhHhhhhh--cccccc-----ccceEEeeC-CC-eeEEEE---C-------
Confidence 46444 999999999999987 56679875443100 000000 111000011 22 677777 2
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+.+|+++ .+|.|++||+.+....... ..|..++.++.+.+. .+++++.||.+.+||+.+++... +...|+|
T Consensus 97 -~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~ 167 (388)
T 1xip_A 97 -GDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTS 167 (388)
T ss_dssp -TTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred -CCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence 7788888 7899999999876543333 356778888887654 38889999999999999887653 3458999
Q ss_pred EEEccCCCEEEEeCCeEEEEECCCCce--eeEe------e---cCCCCeEEEEEeeCCcEEEEEe
Q 006808 165 MAVSSDGKMLATAAGQLKTFNCSDHKK--MQKF------S---GHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 165 l~~~p~~~~l~~~~g~i~lwd~~~~~~--~~~~------~---~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
++|+|+|..+..+.|++++|+...+.. ..++ . +|...|.+|.|.+++.++++-+
T Consensus 168 v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 168 FDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999943333339999999877765 5555 2 3778899999999999888743
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.23 E-value=1.1e-08 Score=100.06 Aligned_cols=230 Identities=10% Similarity=0.034 Sum_probs=145.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..++++++|.++++...++.|.+||.. ++.. .+.... . ......+++.+. +.+
T Consensus 65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~---------------~-~~~~~~i~~~~~---------g~l 117 (300)
T 2qc5_A 65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ---------------P-DSGPYGITEGLN---------GDI 117 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS---------------T-TCCEEEEEECST---------TCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC---------------C-CCCCccceECCC---------CCE
Confidence 445889999887777667889999987 6543 222100 0 112334444432 555
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (630)
+++...++.|..|+.. ++............+.++++.++|+.+++...++.|..||. +++.... .......+.++++
T Consensus 118 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 195 (300)
T 2qc5_A 118 WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITS 195 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEE
Confidence 5555557889999988 55442222234567899999999996666666788999998 5654432 2223446889999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
+++|.++++.. +.|.+|+. +++.... +..+...+.+++++++|+.+++.. .++.|..|+.. +... .+...
T Consensus 196 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~-g~~~----~~~~~ 268 (300)
T 2qc5_A 196 GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW-GANQIGRITND-NTIQ----EYQLQ 268 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEECTT-SCEE----EEECC
T ss_pred CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc-CCCeEEEECCC-CcEE----EEECC
Confidence 99998777765 68999998 5543332 233456788999999998655543 46889999983 3321 22222
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
........+.+. ++|...++.. . .|..++.
T Consensus 269 ~~~~~~~~i~~~-----~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 269 TENAEPHGITFG-----KDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp STTCCCCCEEEC-----TTSCEEEECS-S-EEEEEEE
T ss_pred ccCCccceeEeC-----CCCCEEEEcc-C-ceEEeCC
Confidence 222223444554 7777555544 4 6766664
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.23 E-value=7.4e-09 Score=103.06 Aligned_cols=192 Identities=13% Similarity=0.016 Sum_probs=124.9
Q ss_pred eeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
....|.+.. +.++++...++.|..||..+++.. .+. +...+.+++|+++|+++++. .+ .|.+||..+
T Consensus 52 egp~~~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~ 118 (326)
T 2ghs_A 52 EGPTFDPAS--------GTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT 118 (326)
T ss_dssp EEEEEETTT--------TEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred cCCeEeCCC--------CEEEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence 345676543 556777777889999999988654 221 34579999999999876654 44 499999988
Q ss_pred CceeEEeecC----CCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 149 GSLLGKFRAS----TKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 149 ~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
++........ ...+..++++|+|+++++.. +.|+.++ +++.. .+..+......++|+|+++.++.
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEE
Confidence 8754332211 23588999999999777653 3566666 45433 33333345678999999998877
Q ss_pred EeeCCCeEEEEEcC--CC-ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 217 SAVGERYIALWRTD--GV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 217 ~~~~d~~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
+...++.|.+|++. ++ ..........+.........+++. ++|.+.++...++.|.+|+.
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-----~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-----CCCCEEEEEeCCCEEEEECC
Confidence 66567899999986 44 321111122222222234455555 77877776666678888876
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.22 E-value=2.7e-09 Score=108.67 Aligned_cols=237 Identities=13% Similarity=0.133 Sum_probs=156.1
Q ss_pred eEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEeccc-------ccccccccccccccccccccceeeEEe
Q 006808 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADI-------ASTETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
++|||||++++++. .++.|.++|..+++.+.++.-. ...+..+.++++
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD--------------- 187 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD--------------- 187 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT---------------
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence 49999999888775 3678999999999998877532 122334444444
Q ss_pred cccccccccccCCcEEEEEeC--CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCc
Q 006808 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS 150 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~ 150 (630)
+++++++.. ++.|.+.|+.+++.+.++..+. . ....|+| ..+++.+.||.+.+.++.+++
T Consensus 188 ------------Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 188 ------------NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred ------------CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 777888774 5789999999999887765322 1 2334433 556777788888888886665
Q ss_pred eeEE----eecCCCCe-EEEEEccCCCEEEEeC--CeEEEEECCCCce--eeEeec----------CCCCeEEEEEeeCC
Q 006808 151 LLGK----FRASTKGI-SCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG----------HPGAVRFMTFSDNG 211 (630)
Q Consensus 151 ~~~~----~~~~~~~v-~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~--~~~~~~----------h~~~v~~l~~sp~~ 211 (630)
.... +.....++ ..+.|.+++..++... +.+.+.|...... +..+.- .......++|+|++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 5422 22222221 2356788887766655 8999999865532 111110 01122236899999
Q ss_pred cEEEEEee---------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEe-cCCcEEEEE
Q 006808 212 KYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY 280 (630)
Q Consensus 212 ~~l~~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~dg~i~iwd 280 (630)
++++++.. ..+.|.++|+.+.+.. .....+. ....+.++ |||+ ++++.. .++.|.++|
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv---~~I~vg~---~P~gia~s-----pDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI---NKIELGH---EIDSINVS-----QDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEEEE---EECEEEEC-----CSSSCEEEEEETTTTEEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEE---EEEECCC---CcCeEEEc-----cCCCEEEEEEcCCCCeEEEEE
Confidence 88777642 1347999999998744 2222222 23444555 9998 888888 489999999
Q ss_pred cCCccccccc
Q 006808 281 GQNIEELRNT 290 (630)
Q Consensus 281 ~~~~~~~~~~ 290 (630)
..+++.++..
T Consensus 400 ~~t~kvv~tI 409 (426)
T 3c75_H 400 AATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 9999887654
No 213
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=1.8e-09 Score=118.53 Aligned_cols=241 Identities=17% Similarity=0.201 Sum_probs=156.1
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEeccc-cccc-ccccccccccccccccceeeEEecccccccccccCCcEEEEEe
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTE-TTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (630)
++..+++++.|+.|..+|..+|+.+..+... .... .....+|. + . +..+++++
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~------------v-~------------~g~v~vg~ 174 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPR------------V-V------------NGKVVIGN 174 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCE------------E-E------------TTEEEECC
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcE------------E-E------------CCEEEEEe
Confidence 4567888889999999999999998877642 1000 00000110 0 0 33455554
Q ss_pred C------CCeEEEEEccCCeeeEEccCCC-C-----------------------------CCEEEEEEecCCCEEEEEeC
Q 006808 94 G------GGDVLALAVSAGQLKWRLSDCH-P-----------------------------GGVSAISFATHGSCIYSAGA 137 (630)
Q Consensus 94 ~------~g~v~iwd~~~~~~~~~~~~~h-~-----------------------------~~v~~~~~s~~g~~l~s~~~ 137 (630)
. +|.|..||..+|+.++++.... . .....+++.|++..++.++.
T Consensus 175 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~ 254 (689)
T 1yiq_A 175 GGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG 254 (689)
T ss_dssp BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred CCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC
Confidence 3 6889999999999987764211 0 01125788998889999887
Q ss_pred CCc-------------------EEEEeCCCCceeEEeecCC---------CCeEEEEEccCCC---EEEEeC--CeEEEE
Q 006808 138 DGM-------------------VCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLKTF 184 (630)
Q Consensus 138 dg~-------------------v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~---~l~~~~--g~i~lw 184 (630)
++. |..||..+|+.+..++... .++.......+|+ .++.++ |.++++
T Consensus 255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l 334 (689)
T 1yiq_A 255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI 334 (689)
T ss_dssp CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence 764 9999999999988876421 1222223333564 666766 899999
Q ss_pred ECCCCceeeEeecCC-C--------------------------------------CeEEEEEeeCCcEEEEEeeC-----
Q 006808 185 NCSDHKKMQKFSGHP-G--------------------------------------AVRFMTFSDNGKYVLSSAVG----- 220 (630)
Q Consensus 185 d~~~~~~~~~~~~h~-~--------------------------------------~v~~l~~sp~~~~l~~~~~~----- 220 (630)
|..+|+.+....-.. . ....++|+|+...+++....
T Consensus 335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 414 (689)
T 1yiq_A 335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY 414 (689)
T ss_dssp ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee
Confidence 999999874332110 0 01236888888777765321
Q ss_pred ---------------------------------------CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccC
Q 006808 221 ---------------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD 261 (630)
Q Consensus 221 ---------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (630)
++.|+.||+.+++.. .......+ ..... +.
T Consensus 415 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~---W~~~~~~~--~~~g~-~~----- 483 (689)
T 1yiq_A 415 EHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA---WEVPYVTI--FNGGT-LS----- 483 (689)
T ss_dssp ECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE---EEEEESSS--CCCCE-EE-----
T ss_pred eeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE---eEccCCCC--ccCcc-ce-----
Confidence 367999999998754 22222221 11111 11
Q ss_pred CCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 262 DAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 262 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
..+..+++++.||.++.||.++|+.+...+.
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 4577899999999999999999998876543
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.19 E-value=9.9e-09 Score=100.67 Aligned_cols=219 Identities=11% Similarity=0.067 Sum_probs=133.6
Q ss_pred eEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
..|+|++ .++++...++.|..||..++... .+.. ...+.++++.+. +. +
T Consensus 18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-------------------~~~~~~i~~~~d---------G~-l 67 (297)
T 3g4e_A 18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM-------------------DAPVSSVALRQS---------GG-Y 67 (297)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC-------------------SSCEEEEEEBTT---------SS-E
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC-------------------CCceEEEEECCC---------CC-E
Confidence 4788865 45556666899999999877653 2221 113445555543 55 4
Q ss_pred EEEeCCCeEEEEEccCCeeeEEcc--CC-CCCCEEEEEEecCCCEEEEEeC-----------CCcEEEEeCCCCceeEEe
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~--~~-h~~~v~~~~~s~~g~~l~s~~~-----------dg~v~iwd~~~~~~~~~~ 155 (630)
+++. ++.|.+||..+++...... .+ ....+.+++++|+|+++++... .+.|..++.. ++... +
T Consensus 68 ~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~ 144 (297)
T 3g4e_A 68 VATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-Y 144 (297)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-E
T ss_pred EEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-E
Confidence 4555 5679999998887532211 11 1235889999999996655422 2344444432 33332 2
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC---CeEEEEEC--CCCce-----eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNC--SDHKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~--~~~~~-----~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.........++|+|+++.|+.+. +.|.+|++ .++.. ...+..+...+..+++.++|+..++.. ..+.|.
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~ 223 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVI 223 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEE
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEE
Confidence 22334568899999998776554 78999987 45543 222333445678999999997666554 577899
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
+||..+++.. ..+..+...+.+++|. -|+++.|..++.
T Consensus 224 ~~d~~tG~~~-----~~i~~p~~~~t~~~f~----g~d~~~L~vt~~ 261 (297)
T 3g4e_A 224 RLDPVTGKRL-----QTVKLPVDKTTSCCFG----GKNYSEMYVTCA 261 (297)
T ss_dssp EECTTTCCEE-----EEEECSSSBEEEEEEE----SGGGCEEEEEEB
T ss_pred EEcCCCceEE-----EEEECCCCCceEEEEe----CCCCCEEEEEcC
Confidence 9999877633 2223333334555553 156666655554
No 215
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.17 E-value=7.3e-09 Score=104.10 Aligned_cols=234 Identities=11% Similarity=-0.013 Sum_probs=143.1
Q ss_pred EEC--CCCCEEEEee-CCCcEEEEECCCC----cEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 12 SFS--PALDYFAICS-GDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 12 ~fs--~dg~~las~s-~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.++ +++++|+..+ .+++|.|+|+.+. +...++.... +. ... +. . ...-+...+.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~--~~----~~~---g~-s-~Ph~~~~~pd-------- 148 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE--VK----KVS---GY-S-RLHTVHCGPD-------- 148 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH--HH----HHH---CE-E-EEEEEEECSS--------
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh--cc----ccc---CC-C-cccceeECCC--------
Confidence 457 8888776554 5899999999755 4454442000 00 000 00 0 0000111111
Q ss_pred CCcEEEEEeCC------CeEEEEEccCCeeeEEccCC-CC-CCEEEEEEecCCCEEEEEe-------------------C
Q 006808 85 GSSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HP-GGVSAISFATHGSCIYSAG-------------------A 137 (630)
Q Consensus 85 ~~~~l~~~~~~------g~v~iwd~~~~~~~~~~~~~-h~-~~v~~~~~s~~g~~l~s~~-------------------~ 137 (630)
+ +++++..+ |.|.++|..+.+.+.++..+ .. .--..+.|+|+++.+++.. .
T Consensus 149 -G-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~ 226 (462)
T 2ece_A 149 -A-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY 226 (462)
T ss_dssp -C-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred -e-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence 4 55555555 67999999999998777533 21 2245688999999888884 3
Q ss_pred CCcEEEEeCCCCceeEEeecCC--CCeEEEEE--ccCCCEEEEeC--------CeEEEEECCCCce--eeEe--ecC---
Q 006808 138 DGMVCEIDPLTGSLLGKFRAST--KGISCMAV--SSDGKMLATAA--------GQLKTFNCSDHKK--MQKF--SGH--- 198 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~--~~v~~l~~--~p~~~~l~~~~--------g~i~lwd~~~~~~--~~~~--~~h--- 198 (630)
..+|.+||+.+++.+.++.... .....+.| +|+++++.+++ ++|.+|....+.. .+.+ ...
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 6899999999998888887632 23455656 99998776643 5777765544421 1111 100
Q ss_pred -------------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC--------ce----eeeeE
Q 006808 199 -------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--------AV----FMDCR 253 (630)
Q Consensus 199 -------------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--------~~----~~~~~ 253 (630)
......|.+||||++|+++....+.|.+||+..............+.. +. ....+
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~ 386 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML 386 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE
Confidence 234678999999999999987788999999864321111111112100 00 12344
Q ss_pred EecCCccCCCCCEEEEEe
Q 006808 254 CIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s 271 (630)
.++ |||++|++++
T Consensus 387 ~lS-----pDGk~LyVaN 399 (462)
T 2ece_A 387 EIS-----RDGRRVYVTN 399 (462)
T ss_dssp EEC-----TTSSEEEEEC
T ss_pred EEc-----CCCCEEEEEc
Confidence 455 9999999988
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.16 E-value=3.3e-09 Score=108.06 Aligned_cols=185 Identities=8% Similarity=-0.060 Sum_probs=122.7
Q ss_pred CCCCEEEEeeC-C----CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 15 PALDYFAICSG-D----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 15 ~dg~~las~s~-d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
|+++++++... + +.|.++|..+++.+.++.....+ .+.++|+ ++.+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpD---------------------------gk~l 132 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAED---------------------------GSFF 132 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT---------------------------SSCE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCC---------------------------CCEE
Confidence 46776665554 3 69999999999999888743322 4555554 5556
Q ss_pred EEEe----------CCCeEEEEEccCCeeeEEccCC------CCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCce
Q 006808 90 VLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL 151 (630)
Q Consensus 90 ~~~~----------~~g~v~iwd~~~~~~~~~~~~~------h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~~~~ 151 (630)
+++. .++.|.++|..+++.+.++..+ .......+.|+|||++++++.. ++.|.+.|+.+++.
T Consensus 133 yVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 133 AQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 6665 3567999999999887666422 1124567899999999998874 57899999999999
Q ss_pred eEEeecCCCCeEEEEEccCC-CE-EEEeC-CeEEEEECCCCceeeE----eecCCCCe-EEEEEeeCCcEEEEEeeCCCe
Q 006808 152 LGKFRASTKGISCMAVSSDG-KM-LATAA-GQLKTFNCSDHKKMQK----FSGHPGAV-RFMTFSDNGKYVLSSAVGERY 223 (630)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~~-~~-l~~~~-g~i~lwd~~~~~~~~~----~~~h~~~v-~~l~~sp~~~~l~~~~~~d~~ 223 (630)
+.++..... ....|++ .. ++.+. |.+.+.+..+++.... +.....++ ..+.|.+++..++..+ ..+.
T Consensus 213 v~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~ 287 (426)
T 3c75_H 213 DRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGK 287 (426)
T ss_dssp EEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSE
T ss_pred EEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCc
Confidence 888875321 2333433 22 22222 6666667755554422 21111221 2356789988877776 5789
Q ss_pred EEEEEcCCCc
Q 006808 224 IALWRTDGVK 233 (630)
Q Consensus 224 i~vwd~~~~~ 233 (630)
+.+.|.....
T Consensus 288 V~ViD~~~~~ 297 (426)
T 3c75_H 288 IFQADLTAEG 297 (426)
T ss_dssp EEEEEECSSC
T ss_pred EEEEeccCCc
Confidence 9999987654
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=3.4e-09 Score=116.05 Aligned_cols=242 Identities=16% Similarity=0.204 Sum_probs=159.6
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEeccc-ccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (630)
++..+++++.|+.|..+|..+|+.+..+... .........+.. . + .+..+++++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p---------~--v-------------~~~~v~v~~~ 182 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP---------R--V-------------FKGKVIIGNG 182 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC---------E--E-------------ETTEEEECCB
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc---------E--E-------------ECCEEEEEec
Confidence 4567888888999999999999999887643 110000000000 0 0 0445566654
Q ss_pred ------CCeEEEEEccCCeeeEEccCCCCC-------------------------------CEEEEEEecCCCEEEEEeC
Q 006808 95 ------GGDVLALAVSAGQLKWRLSDCHPG-------------------------------GVSAISFATHGSCIYSAGA 137 (630)
Q Consensus 95 ------~g~v~iwd~~~~~~~~~~~~~h~~-------------------------------~v~~~~~s~~g~~l~s~~~ 137 (630)
+|.|+.||..+|+.++++...... ....+++.|++..++.++.
T Consensus 183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~ 262 (677)
T 1kb0_A 183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG 262 (677)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence 688999999999998776432111 1135788999999988876
Q ss_pred CC-------------------cEEEEeCCCCceeEEeecCC---------CCeEEEEEccCC---CEEEEeC--CeEEEE
Q 006808 138 DG-------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDG---KMLATAA--GQLKTF 184 (630)
Q Consensus 138 dg-------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~---~~l~~~~--g~i~lw 184 (630)
++ .|..+|..+|+.+..++... .....+....+| ..++.++ |.++++
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l 342 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL 342 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence 64 59999999999988776421 122233344467 5677776 899999
Q ss_pred ECCCCceeeEeecCCC-----------Ce------------------------EEEEEeeCCcEEEEEeeC---------
Q 006808 185 NCSDHKKMQKFSGHPG-----------AV------------------------RFMTFSDNGKYVLSSAVG--------- 220 (630)
Q Consensus 185 d~~~~~~~~~~~~h~~-----------~v------------------------~~l~~sp~~~~l~~~~~~--------- 220 (630)
|..+|+.+..+..... ++ ..++|+|++..+++....
T Consensus 343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence 9999998766542110 01 156889988887775421
Q ss_pred ---------------------------------CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEE
Q 006808 221 ---------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (630)
Q Consensus 221 ---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (630)
.+.|..||+.+++.. ....... ........ ..+..+
T Consensus 423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~---W~~~~~~--~~~~g~~~------~~g~~v 491 (677)
T 1kb0_A 423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA---WSVEHVS--PWNGGTLT------TAGNVV 491 (677)
T ss_dssp TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE---EEEEESS--SCCCCEEE------ETTTEE
T ss_pred ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE---eecCCCC--CCcCcceE------eCCCEE
Confidence 267999999998754 2222222 11111111 457788
Q ss_pred EEEecCCcEEEEEcCCcccccccCc
Q 006808 268 LAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 268 ~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
++++.||.+++||..+++.+..+..
T Consensus 492 ~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 492 FQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCcEEEEECCCCceeeeeeC
Confidence 8899999999999999998876643
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=4.5e-08 Score=97.35 Aligned_cols=218 Identities=14% Similarity=0.105 Sum_probs=132.0
Q ss_pred EeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..+|+|++. ++++...++.|.+||..+++... +.. ...+.++.|.+. +.+
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-------------------~~~v~~i~~~~d---------g~l 103 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-------------------PFMGSALAKISD---------SKQ 103 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-------------------SSCEEEEEEEET---------TEE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-------------------CCcceEEEEeCC---------CeE
Confidence 458999754 55566668899999998776432 211 113456666543 444
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccC--CC-CCCEEEEEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSD--CH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~--~h-~~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+ +++.+ .|.+||..+++....... +. ...+.+++++|+|+++++... .+.|..++ +++.. .+....
T Consensus 104 ~-v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 L-IASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp E-EEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred E-EEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 4 44544 499999988875422211 11 235899999999987665432 24566666 45443 232233
Q ss_pred CCeEEEEEccCCCEEEEeC---CeEEEEECC--CC-ce-----eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DH-KK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g~i~lwd~~--~~-~~-----~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.....++|+|+++.++.+. +.|.+|++. ++ .. ...+......+..+++.++|.++++.. .++.|.+|+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence 4567899999998776553 789999986 55 32 222233345578899999998766654 467899999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
.. ++.. ..+..+...+.+++|. .+++..|++++.
T Consensus 258 ~~-g~~~-----~~i~~~~~~~~~~af~----g~d~~~L~vt~~ 291 (326)
T 2ghs_A 258 TD-GNHI-----ARYEVPGKQTTCPAFI----GPDASRLLVTSA 291 (326)
T ss_dssp TT-CCEE-----EEEECSCSBEEEEEEE----STTSCEEEEEEB
T ss_pred CC-CCEE-----EEEECCCCCcEEEEEe----cCCCCEEEEEec
Confidence 84 3321 1222233334455552 156666655544
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.10 E-value=1.3e-09 Score=109.52 Aligned_cols=144 Identities=12% Similarity=0.145 Sum_probs=104.9
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe---------eeEEccCCCCCCEEEEEEecCCCEEEEEeCC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGAD 138 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~---------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d 138 (630)
+..+++.+. ..++++|+.+ .+.+|++.... ........+.. |+.++| ++++|+++ .+
T Consensus 40 ~nlLais~~---------~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~ 105 (388)
T 1xip_A 40 LQNLDISNS---------KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TR 105 (388)
T ss_dssp CBCEEEETT---------TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ES
T ss_pred ccEEEEcCC---------CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cC
Confidence 455565554 6677888776 45669875433 11111113556 999999 88999998 88
Q ss_pred CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
+.|++||+.+.........+..++.++.+.+.. ++++.+ |.|.+||+.++.... +...|++++|||+| ++.+
T Consensus 106 ~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg 178 (388)
T 1xip_A 106 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL 178 (388)
T ss_dssp SEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE
T ss_pred CcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE
Confidence 999999998877666677777888888877653 333333 999999999887643 45689999999999 4555
Q ss_pred eeCCCeEEEEEcCCCc
Q 006808 218 AVGERYIALWRTDGVK 233 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~ 233 (630)
. .||.+++|+.....
T Consensus 179 ~-~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 179 L-KDRSFQSFAWRNGE 193 (388)
T ss_dssp E-TTSCEEEEEEETTE
T ss_pred E-cCCcEEEEcCCCcc
Confidence 5 69999999887765
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.09 E-value=2.8e-08 Score=101.97 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=121.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeEEe----ecCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF----RAST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--~v~iwd~~~~~~~~~~----~~~~ 159 (630)
+.++++...++.|++||+.++....... .. .... ++|+++++.+++++.++ .|.+|+...+.....+ ....
T Consensus 142 g~lyv~d~~~~~I~~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 142 NTVLAYQRDDPRVRLISVDDNKVTTVHP-GF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEE-TC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred CCEEEEecCCCcEEEEECCCCEEEEeec-cC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence 5556666667889999999887653332 22 2233 99999999999888766 7999987766544444 2134
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE----eecCCCCe--EEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK----FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~----~~~h~~~v--~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..+.+++++|++..|+++. +.|+.||..++..... ..++...- ..++|+|++..|+++....+.|+.|+...
T Consensus 219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 5678899999444444455 7899999987753222 12222222 39999997556666665688999998765
Q ss_pred CccccceeeeeecCC--------------ceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcc
Q 006808 232 VKKQSASCVLAMEHP--------------AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE 285 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~ 285 (630)
.... . ..+. -.....+++. |+|.++++-+ .+++|+.|+..++.
T Consensus 299 ~~~~----~--~g~~~~~g~~dg~~~~~~~~~P~gia~d-----~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 299 ECEW----F--CGSATQKTVQDGLREEALFAQPNGMTVD-----EDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp CEEE----E--EECTTCCSCBCEEGGGCBCSSEEEEEEC-----TTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CEEE----E--EeCCCCCCcCCCcccccEeCCCeEEEEe-----CCCCEEEEeCCCCCEEEEEECCCCE
Confidence 3211 1 1111 0123445565 8899777777 78899999976654
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.08 E-value=9.3e-11 Score=118.93 Aligned_cols=183 Identities=10% Similarity=0.058 Sum_probs=100.9
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+.. ++..+++++.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~---------------------------~g~~~v~~s~d 58 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV---------------------------EEPAFLPDPND 58 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------------------CCEEECTTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc---------------------------CCCEEEEeCCC
Confidence 578999999999999999999999987764 1111100000 04466777899
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEE-EEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~-~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
|.|+.||..+|+.++.........+. +..+. .+..+++++.++.++.||..+|+.+..+..+. ...++|++..+
T Consensus 59 g~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v 133 (369)
T 2hz6_A 59 GSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLL 133 (369)
T ss_dssp CCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------E
T ss_pred CEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEE
Confidence 99999999999876655321110010 00111 34567888889999999999999887776543 23456777777
Q ss_pred EEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC---cEEEEEeeCCCeEEEEEcCCCccc
Q 006808 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~---~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
++++ +.|+.||..+|+.+..+..+. .....+.++. ..+++++ .++.|+.||..+++..
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVL 196 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEE
Confidence 7776 899999999998776654221 1222333332 3455555 6999999999988743
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.07 E-value=3.3e-09 Score=106.46 Aligned_cols=240 Identities=9% Similarity=0.063 Sum_probs=140.9
Q ss_pred EeEECCCCCEEEEee--CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.++++|+|+++++.. .++.++||.+.+++. ..+..... . ..++. ..+..+++.+. +.
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~---------~-~~~~~-~~p~gv~~d~~---------g~ 79 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSG---------N-AIITF-DTVLGIKSDGN---------GI 79 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCS---------S-CCCCC-SCEEEEEECSS---------SE
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCccc---------C-cccce-eEeeEEEEcCC---------Cc
Confidence 448999999998864 234355665545543 22321110 0 00111 23445555443 44
Q ss_pred EEEEEeC-----CCeEEEEEccCCeeeEEccC-----CCCCCEEEEEEecCCCEEE-EEe---CCCcEEEEeCCCCceeE
Q 006808 88 LLVLGTG-----GGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIY-SAG---ADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 88 ~l~~~~~-----~g~v~iwd~~~~~~~~~~~~-----~h~~~v~~~~~s~~g~~l~-s~~---~dg~v~iwd~~~~~~~~ 153 (630)
++++-+. .+.|.+||+.+++.+..+.. .+...+..+++++++..++ +-. .++.|.+||+.+++..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 4444333 47899999999986544421 1234578999998655554 444 57899999998887766
Q ss_pred EeecCC-----------------------------CCeEEEEEccCCCEEEEeC---CeEEEEECC---CCc-----eee
Q 006808 154 KFRAST-----------------------------KGISCMAVSSDGKMLATAA---GQLKTFNCS---DHK-----KMQ 193 (630)
Q Consensus 154 ~~~~~~-----------------------------~~v~~l~~~p~~~~l~~~~---g~i~lwd~~---~~~-----~~~ 193 (630)
.+..|. ..+..++|+|+|+.|+++. +.++.++.. .+. ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 553321 2357899999999888775 456555532 111 111
Q ss_pred --EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 194 --KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 194 --~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
...++.+....++++++|..+++.. .++.|.+|+..+++.. .+.... .......+++. +++.++++.+
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~~~---~~~~~~-~~~~p~~va~~-----~~g~l~v~~~ 309 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRAYK---LLVTDE-KLSWTDSFNFG-----SDGYLYFDCN 309 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTEEE---EEEECG-GGSCEEEEEEC-----TTSCEEEEEC
T ss_pred ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCCEE---EEEECC-ceecCCeeEEC-----CCCcEEEEeC
Confidence 1223444567789999998766655 6889999998444422 122111 12334556665 7777777766
Q ss_pred cCCcEEEEE
Q 006808 272 ETGVCYIWY 280 (630)
Q Consensus 272 ~dg~i~iwd 280 (630)
..+.+.+|.
T Consensus 310 ~~~~~~~f~ 318 (343)
T 2qe8_A 310 QLHHSAPLN 318 (343)
T ss_dssp CGGGSGGGB
T ss_pred ccccccccc
Confidence 555544443
No 223
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=4.4e-08 Score=92.66 Aligned_cols=190 Identities=11% Similarity=0.035 Sum_probs=133.7
Q ss_pred eEECCCCCEEEEeeC--CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 11 ~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++|+|+|.++++.+. ++.|+++|+.+++.+..+.-.. +. ...-+.+. +..
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---------------~~--fgeGi~~~-----------g~~ 77 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---------------SY--FGEGLTLL-----------NEK 77 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT---------------TC--CEEEEEEE-----------TTE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC---------------Cc--ceEEEEEe-----------CCE
Confidence 389999765555543 6799999999999988765211 00 00011111 333
Q ss_pred EEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-----Ce
Q 006808 89 LVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-----GI 162 (630)
Q Consensus 89 l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~v 162 (630)
|+.++ .++.+.++|..+.+.+.++..+ ... ...++++|+.++.+..++.|.++|..+.+.+..+..... .+
T Consensus 78 lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp EEEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 44444 5678999999999988777544 111 244666888888877889999999999998888764321 35
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------------CCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
..+.|. +|..++... +.|.+.|..+++.+..+.-. ......|+|+|+++.+++++.....+.+.
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 678888 675555543 89999999999988887521 02458999999998888877677888888
Q ss_pred EcCCC
Q 006808 228 RTDGV 232 (630)
Q Consensus 228 d~~~~ 232 (630)
++...
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 87654
No 224
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.05 E-value=2.5e-08 Score=103.89 Aligned_cols=241 Identities=9% Similarity=0.046 Sum_probs=153.3
Q ss_pred CCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecc-cccccccccCCcEEEEE
Q 006808 15 PALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 15 ~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~l~~~ 92 (630)
+||+++..+.. +++|.+.|+.+.++...+.-..+ .....+++.. ++ +.+++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-----------------~~phg~~~~~~p~--------~~~v~~~ 153 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-----------------KGIHGLRPQKWPR--------SNYVFCN 153 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-----------------CSEEEEEECCSSB--------CSEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-----------------CCCcceeeeecCC--------CcEEEEe
Confidence 38888877665 66799999999998875431110 0111222211 11 5566666
Q ss_pred e------------------CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC---------------
Q 006808 93 T------------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--------------- 139 (630)
Q Consensus 93 ~------------------~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--------------- 139 (630)
+ .++.+.++|..+.+..+++..+ +....++++|+|+++++++.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence 3 2346899999999988777643 2456788999999988887543
Q ss_pred -----------------------cEEEEeCCC--Cce-eEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCc
Q 006808 140 -----------------------MVCEIDPLT--GSL-LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK 190 (630)
Q Consensus 140 -----------------------~v~iwd~~~--~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~ 190 (630)
.|.+.|..+ ++. +..+... ....++.++|||+++++++ ++|.++|+.+.+
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 477888877 544 4555532 3457899999999999987 799999998653
Q ss_pred ------------eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc-----cceeeeeecCCceeeeeE
Q 006808 191 ------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-----SASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 191 ------------~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~ 253 (630)
.+.... -......++|+|+| +++++..-|+.|.+|++...... ....+..+.-+...-...
T Consensus 311 ~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~ 388 (595)
T 1fwx_A 311 AVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK 388 (595)
T ss_dssp HHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred cccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence 223332 23457899999999 77777767999999998762100 001122222211111111
Q ss_pred EecCCccCCCCCEEEEEec-C-CcE-----------EEEEcCCcc
Q 006808 254 CIDNGGVDDAGLYVLAISE-T-GVC-----------YIWYGQNIE 285 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~-d-g~i-----------~iwd~~~~~ 285 (630)
+.....++|||++|++++. . .++ .++|+..++
T Consensus 389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 1111234599999999866 1 233 889985443
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.04 E-value=3.3e-08 Score=108.49 Aligned_cols=199 Identities=12% Similarity=0.156 Sum_probs=126.0
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..+++++.++.|..+|..+|+.+..+.............. ....... ..+ +..|++++.+|
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~--~~~------------~g~v~v~~~dg 131 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACC----DAVNRGV--AVW------------KGKVYVGVLDG 131 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTT----CSCCCCC--EEE------------TTEEEEECTTS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccc----cCCCCcc--EEE------------CCEEEEEccCC
Confidence 45677777889999999999999988764322111000000 0000000 001 56789999999
Q ss_pred eEEEEEccCCeeeEEccCC-CCCCEEEEEEec---CCCEEEEEe------CCCcEEEEeCCCCceeEEeecCC-------
Q 006808 97 DVLALAVSAGQLKWRLSDC-HPGGVSAISFAT---HGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST------- 159 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~-h~~~v~~~~~s~---~g~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~------- 159 (630)
.|..+|..+|+.++++... +......+..+| ++ .++.++ .+|.|+.||..+|+.+..+....
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 9999999999998877543 211111111111 44 455443 36899999999999887765211
Q ss_pred ------------------------CCeEEEEEccCCCEEEEeC--C-------------------eEEEEECCCCceeeE
Q 006808 160 ------------------------KGISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK 194 (630)
Q Consensus 160 ------------------------~~v~~l~~~p~~~~l~~~~--g-------------------~i~lwd~~~~~~~~~ 194 (630)
.....++++|++.+++++. + .|..||..+|+.+-.
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 0112578889888888876 3 399999999998877
Q ss_pred eec--CC-------CCeEEEEEeeCCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 195 ~~~--h~-------~~v~~l~~sp~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+.. |. .++.......+|+ .++.++ .+|.++++|..+++..
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELL 342 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEe
Confidence 753 21 1222223334665 566655 7999999999998754
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.00 E-value=2.7e-08 Score=97.89 Aligned_cols=218 Identities=16% Similarity=0.112 Sum_probs=132.1
Q ss_pred EeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
...|+|+|+ +++++..++.|..|+. ++.. ..+..+.. ....+.|.+. +.+
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~------------------~~~gl~~d~d---------G~l 99 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATA------------------FTNGNAVDAQ---------QRL 99 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCS------------------CEEEEEECTT---------SCE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCC------------------ccceeeECCC---------CCE
Confidence 348999998 5566667889999997 4543 33332221 2334444432 554
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccC---C-CCCCEEEEEEecCCCEEEE----EeC-------------CCcEEEEeCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSD---C-HPGGVSAISFATHGSCIYS----AGA-------------DGMVCEIDPL 147 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~---~-h~~~v~~~~~s~~g~~l~s----~~~-------------dg~v~iwd~~ 147 (630)
+++...++.|.+|+.. ++.. .+.. + ....+.++++.|+|++.++ |.. .+.|..||..
T Consensus 100 ~v~~~~~~~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 100 VHCEHGRRAITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEEETTTTEEEEECTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEEECCCCEEEEECCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 4444455789999986 5432 2211 1 1134678999999997776 321 2568888877
Q ss_pred CCceeEEeecCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCce--eeEe-ecCCCCeEEEEEeeCCcEEEE
Q 006808 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKK--MQKF-SGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~--~~~~-~~h~~~v~~l~~sp~~~~l~~ 216 (630)
+++..... .......++|+|+++.|+++. +.|++|++..+.. ...+ ....+....+++.++|+.. +
T Consensus 178 ~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v 254 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-S 254 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-E
T ss_pred CCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-E
Confidence 77654433 334568899999999776654 3799999875531 1112 1123445678999999854 4
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
++ .+ .|.+|+..... . ..+..+. ....++|. |+++.|..++.++.
T Consensus 255 ~~-~~-gv~~~~~~g~~-~-----~~~~~~~-~~~~~~f~-----~d~~~L~it~~~~l 299 (305)
T 3dr2_A 255 SS-GT-GVCVFDSDGQL-L-----GHIPTPG-TASNCTFD-----QAQQRLFITGGPCL 299 (305)
T ss_dssp CC-SS-EEEEECTTSCE-E-----EEEECSS-CCCEEEEC-----TTSCEEEEEETTEE
T ss_pred ec-CC-cEEEECCCCCE-E-----EEEECCC-ceeEEEEe-----CCCCEEEEEcCCeE
Confidence 43 34 49999984332 2 1222222 24456665 78888888777543
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.98 E-value=6.5e-08 Score=98.31 Aligned_cols=233 Identities=9% Similarity=0.003 Sum_probs=142.2
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..+++++.++.|..||..+|+.+..+........ . ........+ .+.. .+..+++++.+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~-----~~~~~~~~~---~~~~-------~~~~v~v~~~~ 112 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----F-----SKEPALLSG---GVTV-------SGGHVYIGSEK 112 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----C-----SCCCCCEEE---EEEE-------ETTEEEEEETT
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----c-----cccCccccc---CceE-------eCCEEEEEcCC
Confidence 456777888889999999999998876653221000 0 000000000 0000 05678899999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe-----EEEEEccC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD 170 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~ 170 (630)
+.|..+|..+|+.+++..... ........ .+..++.++.++.|..+|..+|+.+..+....... ...... +
T Consensus 113 g~l~a~d~~tG~~~W~~~~~~-~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~ 188 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVAG-EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F 188 (376)
T ss_dssp SEEEEEETTTCCEEEEEECSS-CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred CEEEEEECCCCCEEEEEeCCC-ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence 999999999999887664321 11111122 24578888899999999999999887766432211 122222 3
Q ss_pred CCEEEEeC--CeEEEEECCCCceeeEeecCCCC----------e-EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 171 ~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~----------v-~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+ .++++. +.+..+|..+++.+..+...... + ....+ .+..+++++ .++.+..+|..+++..
T Consensus 189 ~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~tG~~~-- 262 (376)
T 3q7m_A 189 G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRSGQIM-- 262 (376)
T ss_dssp T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTTCCEE--
T ss_pred C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCCCcEE--
Confidence 4 455554 79999999999887666422110 1 01111 234566665 5889999999988744
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
.... ... .. ... .++..|+.++.+|.|..||..+++.+-.
T Consensus 263 -w~~~--~~~-~~-~~~-------~~~~~l~~~~~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 263 -WKRE--LGS-VN-DFI-------VDGNRIYLVDQNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp -EEEC--CCC-EE-EEE-------EETTEEEEEETTCCEEEEETTTCCEEEE
T ss_pred -eecc--CCC-CC-Cce-------EECCEEEEEcCCCeEEEEECCCCcEEEe
Confidence 2221 111 11 122 2357788888999999999999986543
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.98 E-value=1.4e-07 Score=95.71 Aligned_cols=226 Identities=15% Similarity=0.114 Sum_probs=142.8
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..++.++.++.|..+|..+|+.+..+........ .| .+ .+..+++++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~----~p------------~~-------------~~~~v~v~~~~ 152 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS----RP------------VV-------------SDGLVLIHTSN 152 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS----CC------------EE-------------ETTEEEEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc----CC------------EE-------------ECCEEEEEcCC
Confidence 456777888899999999999998876653211000 00 00 05568889999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCE------EEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC----eE--
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGV------SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG----IS-- 163 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v------~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----v~-- 163 (630)
|.|..+|..+|+.++..... .++ ...... +..++.++.++.+..+|..+|+.+..+...... +.
T Consensus 153 g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNLD--MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp SEEEEEETTTCCEEEEEECC--C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CeEEEEECCCCcEEEEEeCC--CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 99999999999988776432 111 112222 457888888999999999999987776532110 00
Q ss_pred -EEEEcc--CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 164 -CMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 164 -~l~~~p--~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
.+...| .+..+++++ +.+..+|..+++.+..... .....+.. ++..+++++ .++.|..+|..+++..
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~-~~g~l~~~d~~tG~~~--- 300 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVD-QNDRVMALTIDGGVTL--- 300 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEE-TTCCEEEEETTTCCEE---
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEc-CCCeEEEEECCCCcEE---
Confidence 011111 133444444 8999999999987766542 23344443 355666666 5889999999988743
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
..... ........... .+..|++++.+|.|++||..+++.+...
T Consensus 301 w~~~~-~~~~~~~~~~~-------~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 301 WTQSD-LLHRLLTSPVL-------YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp EEECT-TTTSCCCCCEE-------ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred Eeecc-cCCCcccCCEE-------ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 21110 11111111111 2467888999999999999999876543
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=1.9e-10 Score=116.64 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=102.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-CeE-
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GIS- 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~- 163 (630)
+..+++++.+|.|..||..+|+.++++.. +.+.+..+.+++..+++++.||.|+.||..+|+.+..+..+.. .+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 67899999999999999999999887753 4555555566777788888999999999999988766653321 110
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+..+. .+..+++++ +.++.||..+|+.+..+..+. ...++|++..+++++ .++.|+.||..+++.. ..+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~---W~~ 156 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKTRELR---WNA 156 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSSSSCC---CEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCCCCEE---EeE
Confidence 11111 233455554 899999999999887776543 234567788888877 5899999999988754 222
Q ss_pred eecCCceeeeeEEecCCccCCCC---CEEEEEecCCcEEEEEcCCccccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAG---LYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.... .....+. ++. ..+++++.+|.|+.||..+|+.+-..
T Consensus 157 ~~~~----~~~~~~~-----~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 157 TYFD----YAASLPE-----DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEEE----ECCBCCC-----CCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred eccc----ccCcccc-----CCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 2111 0111111 221 56777889999999999999876543
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=1.1e-08 Score=102.48 Aligned_cols=231 Identities=11% Similarity=0.007 Sum_probs=142.3
Q ss_pred eEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccc-------cccccccccccccccccccceeeEEe
Q 006808 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
++|+|||++++++. .++.|.+||+.+++.+.++..+. ..+..+.++|+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD--------------- 134 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS--------------- 134 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT---------------
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence 49999999888876 36889999999999999886431 12334444444
Q ss_pred cccccccccccCCcEEEEEeC--CCeEEE--EEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCC
Q 006808 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLA--LAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~v~i--wd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~ 148 (630)
+++++++.. +..|.+ +|+.+ +..+..+. . +.+.|+|+ .+++.+.|+.+...|+.+
T Consensus 135 ------------Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 135 ------------SACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp ------------SSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred ------------CCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 677888775 356888 99887 22332221 1 12334443 455667788888889876
Q ss_pred -----CceeE----EeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCc--eeeEeec-------C---CCCeEEEE
Q 006808 149 -----GSLLG----KFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK--KMQKFSG-------H---PGAVRFMT 206 (630)
Q Consensus 149 -----~~~~~----~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~--~~~~~~~-------h---~~~v~~l~ 206 (630)
++... .+.....+. . .+++..++..+ +.+.+.|..+.. .+..+.- + ......+.
T Consensus 195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~ 270 (368)
T 1mda_H 195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence 43321 122223343 3 55555444444 889999986542 2222211 0 11122268
Q ss_pred EeeCCcEEEEEee---C-----CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCE-EEEEe-cCCcE
Q 006808 207 FSDNGKYVLSSAV---G-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAIS-ETGVC 276 (630)
Q Consensus 207 ~sp~~~~l~~~~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s-~dg~i 276 (630)
|+|++++++++.. . +..+.++|+.+.+.. .....+. ....+.++ |||++ +++.. .++.|
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv---~~i~vg~---~p~gi~~s-----~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS---GPISNGH---DSDAIIAA-----QDGASDNYANSAGTEVL 339 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE---ECCEEEE---EECEEEEC-----CSSSCEEEEEETTTTEE
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE---EEEECCC---CcceEEEC-----CCCCEEEEEccCCCCeE
Confidence 9999998887643 1 235669999998744 1222222 23445555 89874 55556 58999
Q ss_pred EEEEcCCcccccccC
Q 006808 277 YIWYGQNIEELRNTK 291 (630)
Q Consensus 277 ~iwd~~~~~~~~~~~ 291 (630)
.++|+.+++.+...+
T Consensus 340 sVID~~t~kvv~~I~ 354 (368)
T 1mda_H 340 DIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEESSSCEEEEECC
T ss_pred EEEECCCCcEEEEEE
Confidence 999999998877654
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.93 E-value=1.8e-07 Score=94.04 Aligned_cols=190 Identities=11% Similarity=0.056 Sum_probs=128.3
Q ss_pred CcEEEEEeCCCeEEEEEccCC----eeeEEcc------CCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAG----QLKWRLS------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG 149 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~----~~~~~~~------~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~ 149 (630)
..+++.+..++.|.++|+.+. +....+. +.-......+...|+| .++++..+ |.|.++|..++
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 345555667788999999765 4444331 0011245667888999 77766555 78999999999
Q ss_pred ceeEEeecCCC---CeEEEEEccCCCEEEEe---------------------CCeEEEEECCCCceeeEeecC-C-CCeE
Q 006808 150 SLLGKFRASTK---GISCMAVSSDGKMLATA---------------------AGQLKTFNCSDHKKMQKFSGH-P-GAVR 203 (630)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~~p~~~~l~~~---------------------~g~i~lwd~~~~~~~~~~~~h-~-~~v~ 203 (630)
+.+.++..... .-+.+.|+|+++.+++. +++|.+||+.+++.+.++.-. . ....
T Consensus 175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL 254 (462)
T ss_dssp CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence 99999874322 23458889999999888 379999999998888877642 1 2345
Q ss_pred EEEE--eeCCcEEEEEee-----CCCeEEEEEcCCCccccceeeeeecCC----------------ceeeeeEEecCCcc
Q 006808 204 FMTF--SDNGKYVLSSAV-----GERYIALWRTDGVKKQSASCVLAMEHP----------------AVFMDCRCIDNGGV 260 (630)
Q Consensus 204 ~l~~--sp~~~~l~~~~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 260 (630)
.+.| +|+++++++++. .+++|.+|....+... ......+... .....-+.++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS---- 329 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS---- 329 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEEEEeCCCccccccccccccccccCCCceeEEEEC----
Confidence 6666 999999998886 6778888776543211 0011000100 1123334454
Q ss_pred CCCCCEEEEEec-CCcEEEEEcC
Q 006808 261 DDAGLYVLAISE-TGVCYIWYGQ 282 (630)
Q Consensus 261 ~~~~~~l~s~s~-dg~i~iwd~~ 282 (630)
+||++|.+++. .+.|.+||+.
T Consensus 330 -~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 330 -LDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp -TTSCEEEEEETTTTEEEEEECS
T ss_pred -CCCCEEEEEeCCCCEEEEEEec
Confidence 99999988876 7799999985
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.92 E-value=2.9e-07 Score=95.91 Aligned_cols=190 Identities=9% Similarity=0.044 Sum_probs=130.5
Q ss_pred CcEEEEEeCC-CeEEEEEccCCeeeEEccCCCCCCEEEEEE-e-cCCCEEEEEe------------------CCCcEEEE
Q 006808 86 SSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISF-A-THGSCIYSAG------------------ADGMVCEI 144 (630)
Q Consensus 86 ~~~l~~~~~~-g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~-s-~~g~~l~s~~------------------~dg~v~iw 144 (630)
+++++++..+ +.|.+.|+.+.++...+.......+..+++ + |+++++++++ .++.+.++
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 5667776654 559999999999776332233456889998 5 8999998884 34589999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C---------------------------------------eEEEE
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G---------------------------------------QLKTF 184 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g---------------------------------------~i~lw 184 (630)
|..+.+...++.... ....++++|+|+++++++ + .|.+.
T Consensus 181 D~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 181 DADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp ETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred ECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 999998888877544 446788999999988876 2 25666
Q ss_pred ECCC--Cce-eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc------ccce-eeeeecCCceeeeeEE
Q 006808 185 NCSD--HKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSAS-CVLAMEHPAVFMDCRC 254 (630)
Q Consensus 185 d~~~--~~~-~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~------~~~~-~~~~~~~~~~~~~~~~ 254 (630)
|..+ ++. +..++.. ....++.++|||+++++++..+.+|.++|+.+.+. .... ...... .+.-.....
T Consensus 260 D~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a 337 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA 337 (595)
T ss_dssp ECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred eCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence 6666 444 3444322 24567899999999999987888999999986531 0000 111111 122234455
Q ss_pred ecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 255 IDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 255 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
|+ |+|...++.-.|+.|.+||+..
T Consensus 338 F~-----~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 338 FD-----GRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EC-----TTSEEEEEETTTTEEEEEEHHH
T ss_pred EC-----CCCeEEEEEecCCcEEEEEhhH
Confidence 65 8994334455699999999876
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.92 E-value=3.3e-07 Score=100.30 Aligned_cols=199 Identities=11% Similarity=0.100 Sum_probs=127.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..+++++.++.|..+|..+|+.+..+.............. ..... .+.. .+..|++++.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~---~~a~-----------~~~~v~v~~~dg 138 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCC----DVVNR---GVAL-----------WKGKVYVGAWDG 138 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSS----CSCCC---CCEE-----------ETTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccc----cCCCC---CceE-----------ECCEEEEEcCCC
Confidence 44666777789999999999999988764322111000000 00000 0000 056789999999
Q ss_pred eEEEEEccCCeeeEEccCC-CC---CCEEEEEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecCCCC-----
Q 006808 97 DVLALAVSAGQLKWRLSDC-HP---GGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG----- 161 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~-h~---~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~----- 161 (630)
.|..+|..+|+.++++..+ .. ..+.+--.- .+..++.++. ++.|+.||..+|+.+..+......
T Consensus 139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence 9999999999998877543 10 112111111 2345555543 689999999999998777642211
Q ss_pred ---------------------------eEEEEEccCCCEEEEeC--C-------------------eEEEEECCCCceee
Q 006808 162 ---------------------------ISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQ 193 (630)
Q Consensus 162 ---------------------------v~~l~~~p~~~~l~~~~--g-------------------~i~lwd~~~~~~~~ 193 (630)
...++++|++..++++. + .|..+|..+|+.+.
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W 297 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW 297 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence 13578889888888765 2 49999999999887
Q ss_pred Eeec--CC-------CCeEEEEEeeCC---cEEEEEeeCCCeEEEEEcCCCccc
Q 006808 194 KFSG--HP-------GAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 194 ~~~~--h~-------~~v~~l~~sp~~---~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.+.. |. ....-+....+| ..+++++ .+|.++++|..+++..
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFI 350 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEe
Confidence 7653 21 122233444577 5666665 7999999999998754
No 234
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.92 E-value=1.9e-07 Score=102.03 Aligned_cols=240 Identities=18% Similarity=0.223 Sum_probs=152.9
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEeccccccccc-ccccccccccccccceeeEEecccccccccccCCcEEEEEeC-
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT-SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~- 94 (630)
+..++.++.|+.|..+|..+|+.+..+......... ...+|. +. +..+++++.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~------------v~-------------~~~v~vg~~~ 171 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR------------VV-------------KGKVIIGNGG 171 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE------------EE-------------TTEEEECCBC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE------------EE-------------CCEEEEeCCC
Confidence 557788888999999999999998877642111000 000000 00 344566554
Q ss_pred -----CCeEEEEEccCCeeeEEccCC--CC----------------------------CCEEEEEEecCCCEEEEEeCCC
Q 006808 95 -----GGDVLALAVSAGQLKWRLSDC--HP----------------------------GGVSAISFATHGSCIYSAGADG 139 (630)
Q Consensus 95 -----~g~v~iwd~~~~~~~~~~~~~--h~----------------------------~~v~~~~~s~~g~~l~s~~~dg 139 (630)
+|.|..||..+|+.++++... .. .....+++.|++..++.++.++
T Consensus 172 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g 251 (668)
T 1kv9_A 172 AEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNG 251 (668)
T ss_dssp TTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred CCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCC
Confidence 488999999999998876421 10 0112468888888888887776
Q ss_pred -------------------cEEEEeCCCCceeEEeecC--C-------CCeEEEEEccCCC---EEEEeC--CeEEEEEC
Q 006808 140 -------------------MVCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTFNC 186 (630)
Q Consensus 140 -------------------~v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~~~---~l~~~~--g~i~lwd~ 186 (630)
.|..+|..+|+.+..++.. . .+.....+..+|+ .++.++ |.++++|.
T Consensus 252 ~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~ 331 (668)
T 1kv9_A 252 SPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDR 331 (668)
T ss_dssp ESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred CccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEEC
Confidence 3999999999998887642 1 2233333334665 566666 89999999
Q ss_pred CCCceeeEeecCCC------------C------------------------eEEEEEeeCCcEEEEEe------------
Q 006808 187 SDHKKMQKFSGHPG------------A------------------------VRFMTFSDNGKYVLSSA------------ 218 (630)
Q Consensus 187 ~~~~~~~~~~~h~~------------~------------------------v~~l~~sp~~~~l~~~~------------ 218 (630)
.+|+.+...+.... + -..++++|+...+++..
T Consensus 332 ~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~ 411 (668)
T 1kv9_A 332 TNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGK 411 (668)
T ss_dssp TTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGG
T ss_pred CCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecc
Confidence 99998744321110 0 01267788766655421
Q ss_pred -----------------------eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 219 -----------------------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 219 -----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
..++.|..||+.+++.. ........ ....... ..+.++++++.||.
T Consensus 412 ~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~---W~~~~~~~--~~~~~~~------t~gg~vf~g~~dg~ 480 (668)
T 1kv9_A 412 DFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA---WKVPYPTH--WNGGTLS------TAGNLVFQGTAAGQ 480 (668)
T ss_dssp GCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE---EEEEESSS--CCCCEEE------ETTTEEEEECTTSE
T ss_pred ccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE---EEccCCCC--CcCceeE------eCCCEEEEECCccc
Confidence 12378999999998754 22222221 1111111 35678888999999
Q ss_pred EEEEEcCCcccccccCc
Q 006808 276 CYIWYGQNIEELRNTKA 292 (630)
Q Consensus 276 i~iwd~~~~~~~~~~~~ 292 (630)
++.||..+++.+...+.
T Consensus 481 l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 481 MHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEEETTTCCEEEEEEC
T ss_pred chhhhhhcChhheEecC
Confidence 99999999988766543
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.91 E-value=6.2e-08 Score=95.30 Aligned_cols=195 Identities=13% Similarity=0.064 Sum_probs=122.1
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
...|.+.. ..++++...++.|..|+.. +... .+ ..+...+.+++++++|+++++...++.|..|+.. +
T Consensus 49 gp~~~~~g--------~~l~~~d~~~~~i~~~~~~-g~~~-~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 49 GPAWWEAQ--------RTLVWSDLVGRRVLGWRED-GTVD-VL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EEEEEGGG--------TEEEEEETTTTEEEEEETT-SCEE-EE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCeEeCCC--------CEEEEEECCCCEEEEEeCC-CCEE-EE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 45666542 3367777788999999984 4432 22 2355678999999999866665566789999975 5
Q ss_pred ceeEEeecC----CCCeEEEEEccCCCEEEE----eC---------------CeEEEEECCCCceeeEeecCCCCeEEEE
Q 006808 150 SLLGKFRAS----TKGISCMAVSSDGKMLAT----AA---------------GQLKTFNCSDHKKMQKFSGHPGAVRFMT 206 (630)
Q Consensus 150 ~~~~~~~~~----~~~v~~l~~~p~~~~l~~----~~---------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~ 206 (630)
+........ ...+..++++|+|+++++ |. +.|+.||..+++..... .......++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~ 194 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLA 194 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceE
Confidence 532221111 124678999999998886 21 46788887667644332 344568899
Q ss_pred EeeCCcEEEEEeeC-----CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 207 FSDNGKYVLSSAVG-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 207 ~sp~~~~l~~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|+|+++.|+++... .+.|++|++...... ....+. .........+.+. ++|++.+ ++.+ .|.+|+.
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~-~~~~~~pdgi~~d-----~~G~lwv-~~~~-gv~~~~~ 265 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH-DRRHFA-SVPDGLPDGFCVD-----RGGWLWS-SSGT-GVCVFDS 265 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTEEE-EEEEEE-CCSSSCCCSEEEC-----TTSCEEE-CCSS-EEEEECT
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc-CCeEEE-ECCCCCCCeEEEC-----CCCCEEE-ecCC-cEEEECC
Confidence 99999988877643 268999998764311 011111 1111122334454 7888444 4444 4999997
Q ss_pred CCccccc
Q 006808 282 QNIEELR 288 (630)
Q Consensus 282 ~~~~~~~ 288 (630)
.++.+.
T Consensus 266 -~g~~~~ 271 (305)
T 3dr2_A 266 -DGQLLG 271 (305)
T ss_dssp -TSCEEE
T ss_pred -CCCEEE
Confidence 454433
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.85 E-value=7.6e-08 Score=96.35 Aligned_cols=125 Identities=10% Similarity=-0.037 Sum_probs=91.8
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCceeEEeecCC-------
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAST------- 159 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~------- 159 (630)
.|.++|..+++.+.++..+.. + .+.|+|+|++++++. .++.|.+||+.+++.+.++....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 788999999999988876654 4 799999999988886 36889999999999999987541
Q ss_pred CCeEEEEEccCCCEEEEeC----CeEEE--EECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA----GQLKT--FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~----g~i~l--wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.....++++|||++++++. +.+.+ +|+.+ +.++.... . ..+.|+++..+.+.+.|+.+.+.++.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 2356899999999998874 47888 88876 44443211 1 123455543333333677777788776
No 237
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.84 E-value=3.5e-07 Score=85.33 Aligned_cols=173 Identities=7% Similarity=0.034 Sum_probs=120.0
Q ss_pred EECCCCCEEEEeeCCC--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.|+ ++.++.+.+.+| .|+++|+.+|+.+..+.-... . | ...+ .. . +..|
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~----F---------geGi---t~--~---------g~~l 99 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-Y----F---------GEGI---SD--W---------KDKI 99 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-C----C---------EEEE---EE--E---------TTEE
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-c----c---------eeEE---EE--e---------CCEE
Confidence 677 676667777665 899999999999887752110 0 0 0001 10 0 3345
Q ss_pred EEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-----CCeE
Q 006808 90 VLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS 163 (630)
Q Consensus 90 ~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~ 163 (630)
+..+ .++.+.+||..+.+.+.++..+- ....++++++.|+.+..++.|.++|..+.+.+.++.... ..+.
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 5555 46789999999999987775432 223444678888877778889999999999888876532 2344
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC------------CCCeEEEEEeeCCcEEEEEe
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~l~~~~ 218 (630)
.+.|. +|..++..- +.|.+.|..+++.+..+... ..-.+.|+|+|+++.|+++|
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 57776 676555543 79999999999988877532 12458899999988888877
No 238
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.80 E-value=1e-07 Score=105.13 Aligned_cols=195 Identities=12% Similarity=0.043 Sum_probs=125.1
Q ss_pred ceeeEEecccccccccccCCcEEEEEe-CCC----eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC--
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGT-GGG----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-- 139 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~-~~g----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-- 139 (630)
.+..+.|.|. +++|+.+. ..| .|++||+.+++.+.....+ ....+++|+ ||+.|+.++.+.
T Consensus 130 ~l~~~~~SpD---------g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 130 ALDQLSFSRD---------GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPD 197 (693)
T ss_dssp EEEEEEECTT---------SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC
T ss_pred EEEEEEECCC---------CCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcc
Confidence 4555667664 55555433 333 4999999999865432211 113567899 999988887774
Q ss_pred -----------cEEEEeCCCCce--eEEeec---CCCCeEEEEEccCCCEEEEeC------CeEEEEECCCCc-eeeEee
Q 006808 140 -----------MVCEIDPLTGSL--LGKFRA---STKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFS 196 (630)
Q Consensus 140 -----------~v~iwd~~~~~~--~~~~~~---~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~-~~~~~~ 196 (630)
.|++|++.+++. ...+.. +...+..+.|+|||++|+... +.|+++|+.++. ....+.
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 399999987653 222332 334578899999999886543 389999998764 455666
Q ss_pred cCCCCeEEEEEeeCCcEEEEEeeCC---CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-
Q 006808 197 GHPGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE- 272 (630)
Q Consensus 197 ~h~~~v~~l~~sp~~~~l~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~- 272 (630)
.+....... |+++|..|+..+..+ +.|..|++.++...... ....+....+ .++ +++.+|+....
T Consensus 278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~--~l~~~~~~~~---~~s-----~~g~~lv~~~~~ 346 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR--DLIPERQQVL---TVH-----SGSGYLFAEYMV 346 (693)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE--EEECCCSSCE---EEE-----EETTEEEEEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE--EEecCCCCEE---EEE-----EECCEEEEEEEE
Confidence 666665555 667777666655333 57999999876532111 1223333333 444 77888777665
Q ss_pred CC--cEEEEEcCCc
Q 006808 273 TG--VCYIWYGQNI 284 (630)
Q Consensus 273 dg--~i~iwd~~~~ 284 (630)
+| .|++|++..+
T Consensus 347 ~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 347 DATARVEQFDYEGK 360 (693)
T ss_dssp TTEEEEEEECTTSC
T ss_pred CCeeEEEEEECCCC
Confidence 44 6889988744
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.79 E-value=1.1e-06 Score=94.10 Aligned_cols=238 Identities=15% Similarity=0.122 Sum_probs=148.9
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccc-cccccccccccccccceeeEEecccccccccccCCcEEEEEeC-
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~- 94 (630)
+..++.++.|+.|..+|..+|+.+..+........ ....+|. + . +..+++++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~------------v-~------------~g~v~vg~~~ 169 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPF------------V-A------------KDTVLMGCSG 169 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE------------E-E------------TTEEEEECBC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCE------------E-E------------CCEEEEEecC
Confidence 55777888899999999999999877653211000 0000000 0 0 345666665
Q ss_pred -----CCeEEEEEccCCeeeEEccCCCCC-------------------------------------CEEEEEEecCCCEE
Q 006808 95 -----GGDVLALAVSAGQLKWRLSDCHPG-------------------------------------GVSAISFATHGSCI 132 (630)
Q Consensus 95 -----~g~v~iwd~~~~~~~~~~~~~h~~-------------------------------------~v~~~~~s~~g~~l 132 (630)
+|.|..+|..+|+.++++...... ....+++.+....+
T Consensus 170 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~v 249 (571)
T 2ad6_A 170 AELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLF 249 (571)
T ss_dssp GGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEE
T ss_pred CccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeE
Confidence 789999999999998776432110 00235677766777
Q ss_pred EEEeCC----------------CcEEEEeCCCCceeEEeecCC----------CCeEEEEEccCCC---EEEEeC--CeE
Q 006808 133 YSAGAD----------------GMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSDGK---MLATAA--GQL 181 (630)
Q Consensus 133 ~s~~~d----------------g~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~~~---~l~~~~--g~i 181 (630)
+.++.+ +.|..+|..+|+.+..++... .++ -+...++|+ .++.++ |.+
T Consensus 250 y~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l 328 (571)
T 2ad6_A 250 YYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGIL 328 (571)
T ss_dssp EEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEE
T ss_pred EEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEE
Confidence 766532 359999999999988776421 122 122334674 455565 899
Q ss_pred EEEECCCCceeeEeecCC-------------CCe--------------------------EEEEEeeCCcEEEEEee---
Q 006808 182 KTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYVLSSAV--- 219 (630)
Q Consensus 182 ~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~~l~~~~~--- 219 (630)
+++|..+|+.+..+.... .++ ..++|+|+...+++.+.
T Consensus 329 ~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 408 (571)
T 2ad6_A 329 YTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHIC 408 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEE
T ss_pred EEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcc
Confidence 999999998876654211 111 24578888777766542
Q ss_pred ---------------------------------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCE
Q 006808 220 ---------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY 266 (630)
Q Consensus 220 ---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (630)
.++.|..||+.+++.. ........ ....... ..+..
T Consensus 409 ~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~---W~~~~~~~--~~~~~~~------t~gg~ 477 (571)
T 2ad6_A 409 MDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK---WTKWEKFA--AWGGTLY------TKGGL 477 (571)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE---EEEEESSC--CCSBCEE------ETTTE
T ss_pred ccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE---EEecCCCC--ccceeEE------ECCCE
Confidence 2478899999888744 22222211 1111111 24567
Q ss_pred EEEEecCCcEEEEEcCCcccccccC
Q 006808 267 VLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 267 l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
++.++.||.|+.||..+|+.+...+
T Consensus 478 v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCCEEEEEe
Confidence 7789999999999999998876554
No 240
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.78 E-value=1.1e-06 Score=93.83 Aligned_cols=244 Identities=14% Similarity=0.109 Sum_probs=149.5
Q ss_pred EECCCCCE----EEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 12 SFSPALDY----FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 12 ~fs~dg~~----las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+++|.+.. ++.++.|+.|..+|..+|+.+...............+.+ .+ . +.
T Consensus 112 av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP-----------~v-~------------~g 167 (599)
T 1w6s_A 112 AYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP-----------YV-V------------KD 167 (599)
T ss_dssp EEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC-----------EE-E------------TT
T ss_pred EEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCC-----------EE-E------------CC
Confidence 45444444 788888999999999999998776532210000000000 00 0 34
Q ss_pred EEEEEeC------CCeEEEEEccCCeeeEEccCCCCC------------------------------------CE-EEEE
Q 006808 88 LLVLGTG------GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAIS 124 (630)
Q Consensus 88 ~l~~~~~------~g~v~iwd~~~~~~~~~~~~~h~~------------------------------------~v-~~~~ 124 (630)
.+++++. +|.|+.+|..+|+.++++...... .+ ..++
T Consensus 168 ~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a 247 (599)
T 1w6s_A 168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA 247 (599)
T ss_dssp EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee
Confidence 4566553 789999999999998776432110 01 1356
Q ss_pred EecCCCEEEEEeCC----------------CcEEEEeCCCCceeEEeecCCC----------CeEEEEEc-cCC---CEE
Q 006808 125 FATHGSCIYSAGAD----------------GMVCEIDPLTGSLLGKFRASTK----------GISCMAVS-SDG---KML 174 (630)
Q Consensus 125 ~s~~g~~l~s~~~d----------------g~v~iwd~~~~~~~~~~~~~~~----------~v~~l~~~-p~~---~~l 174 (630)
+.+....++.+..+ +.|..+|..+|+.+..++.... ++ -+... .+| ..+
T Consensus 248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v 326 (599)
T 1w6s_A 248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLL 326 (599)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEE
T ss_pred EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEE
Confidence 66777788877655 3799999999999887765322 12 12222 467 456
Q ss_pred EEeC--CeEEEEECCCCceeeEeecCC-------------CCe--------------------------EEEEEeeCCcE
Q 006808 175 ATAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKY 213 (630)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~~ 213 (630)
+.++ |.++++|..+|+.+....-.. .++ ..++|+|+...
T Consensus 327 ~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~ 406 (599)
T 1w6s_A 327 THPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKREL 406 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred EEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCE
Confidence 6565 899999999998876553111 111 24567776665
Q ss_pred EEEEee--------------------------------------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEe
Q 006808 214 VLSSAV--------------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 214 l~~~~~--------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (630)
+++... ..+.|..||+.+++.. .......+ .......
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~---W~~~~~~~--~~~g~~~ 481 (599)
T 1w6s_A 407 FFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK---WEKMERFA--VWGGTMA 481 (599)
T ss_dssp EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE---EEEEESSC--CCSBCEE
T ss_pred EEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEE---eEecCCCC--ccCcceE
Confidence 554321 2367888888887643 22222211 1111111
Q ss_pred cCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..+..++.++.||.++.||.++|+.+-..+
T Consensus 482 ------tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 482 ------TAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp ------ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ------ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 246778889999999999999999876654
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.77 E-value=4.5e-07 Score=90.74 Aligned_cols=189 Identities=10% Similarity=0.096 Sum_probs=116.0
Q ss_pred eEeEECCCCCEEEEeeC-----CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..++|+++|+++++-.. ++.|.+||+.+++.+..+....... ........+++.+..
T Consensus 70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~------------~~~~~~~~v~vd~~~------ 131 (343)
T 2qe8_A 70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT------------LSNSFVNDLAVDLIH------ 131 (343)
T ss_dssp EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS------------CTTCCCCEEEEETTT------
T ss_pred eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc------------ccccccceEEEecCC------
Confidence 45699999987665443 5789999999998777664221100 000112234443321
Q ss_pred cCCcEEEEEe---CCCeEEEEEccCCeeeEEccCCCC-----------------------------CCEEEEEEecCCCE
Q 006808 84 LGSSLLVLGT---GGGDVLALAVSAGQLKWRLSDCHP-----------------------------GGVSAISFATHGSC 131 (630)
Q Consensus 84 ~~~~~l~~~~---~~g~v~iwd~~~~~~~~~~~~~h~-----------------------------~~v~~~~~s~~g~~ 131 (630)
+..+++.. .++.|.+||+.+++....+ .+|. ..+..++|+|+|+.
T Consensus 132 --g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ 208 (343)
T 2qe8_A 132 --NFVYISDPAPDDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW 208 (343)
T ss_dssp --TEEEEEECCSGGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE
T ss_pred --CEEEEEcCccCCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE
Confidence 33334443 5678999999887754332 2221 23688999999998
Q ss_pred EEEEeCCC-cEEEEeCC---CCc-----eeE--EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec-
Q 006808 132 IYSAGADG-MVCEIDPL---TGS-----LLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG- 197 (630)
Q Consensus 132 l~s~~~dg-~v~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~- 197 (630)
|+.+...+ .+..++.. .+. ... ...++......++++++|.++++.. +.|.+||..+++.......
T Consensus 209 ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 209 LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG
T ss_pred EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC
Confidence 88887665 45444421 111 000 1112233456799999998887776 7999999856654332322
Q ss_pred CCCCeEEEEEeeCCcEEEEEe
Q 006808 198 HPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 198 h~~~v~~l~~sp~~~~l~~~~ 218 (630)
+...+.+++|.+++..+++++
T Consensus 289 ~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp GGSCEEEEEECTTSCEEEEEC
T ss_pred ceecCCeeEECCCCcEEEEeC
Confidence 245688999999988766655
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.76 E-value=1.6e-07 Score=93.32 Aligned_cols=295 Identities=15% Similarity=0.128 Sum_probs=163.7
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.+..+| .+..++.++.|..|| .+++....+......+ ..+.... ...+++
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~------------------~~~~~~~----------~g~l~v 75 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIE------------------CRPSIGK----------DGTIYF 75 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEE------------------ECCEETT----------TTEECC
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcc------------------cceEEec----------CCcEEE
Confidence 444555 455666788899999 8888765443211111 1111111 334556
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
++.+ |..||. +++....+.. .........+. +..++.++.++.+..+|.. ++....+......+.++...+++
T Consensus 76 ~t~~--l~~~d~-~g~~~~~~~~-~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g 148 (330)
T 3hxj_A 76 GSDK--VYAINP-DGTEKWRFDT-KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG 148 (330)
T ss_dssp SSCE--EEEECC-CGGGGGGSCC------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS
T ss_pred ecCc--EEEECC-CCcEEEEEEC-CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC
Confidence 6555 888886 5555433321 22222233333 5578888889999999988 87776666555566777888888
Q ss_pred CEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceee
Q 006808 172 KMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (630)
Q Consensus 172 ~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (630)
.+++... +.|..||.. ++.+..+......+.++.+.+++..++.+ +.|..|| .+++.. .........+
T Consensus 149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t----~~l~~~d-~~g~~~-----~~~~~~~~~~ 217 (330)
T 3hxj_A 149 TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS----DKVYAIN-PDGTEK-----WNFYAGYWTV 217 (330)
T ss_dssp CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES----SSEEEEC-TTSCEE-----EEECCSSCCC
T ss_pred EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe----CEEEEEC-CCCcEE-----EEEccCCcce
Confidence 8666655 899999998 87776776555667777777777755432 6789999 554422 2222222334
Q ss_pred eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeE
Q 006808 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 330 (630)
...... ++| .|..++.++.|..++. +++.+............ ....++ ..|.+++.++.+
T Consensus 218 ~~~~~~-----~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~-----g~l~v~t~~ggl------- 277 (330)
T 3hxj_A 218 TRPAIS-----EDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESS-PVIGNT-----DTIYFGSYDGHL------- 277 (330)
T ss_dssp SCCEEC-----TTS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSC-CEECTT-----SCEEEECTTCEE-------
T ss_pred eceEEC-----CCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCcccc-ceEcCC-----CeEEEecCCCCE-------
Confidence 444443 555 4666777788888874 45444322211100000 001111 145555554321
Q ss_pred EEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.. +.. ....+.........+.++...++|.+. + ++.++.+++.+
T Consensus 278 ~~-~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~-gt~~G~~~~~~ 321 (330)
T 3hxj_A 278 YA-INP-DGTEKWNFETGSWIIATPVIDENGTIY-F-GTRNGKFYALF 321 (330)
T ss_dssp EE-ECT-TSCEEEEEECSSCCCSCCEECTTCCEE-E-ECTTSCEEEEE
T ss_pred EE-ECC-CCcEEEEEEcCCccccceEEcCCCEEE-E-EcCCCeEEEEe
Confidence 11 111 122233333444556677777888765 3 45567666544
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.75 E-value=7.6e-06 Score=78.48 Aligned_cols=200 Identities=10% Similarity=-0.005 Sum_probs=122.4
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~ 146 (630)
...++|.+.+ +.++++-...+.|..+++..+... .+.........++++++++..++.+ ...+.|.++++
T Consensus 38 ~~gi~~d~~~--------~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 38 IIGLAFDCVD--------KVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEEEEecCC--------CEEEEEECCCCEEEEEecCCCCcE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence 3456666542 344455556788999999876543 2222223568999999976665555 45678999998
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
..................++++|++..|..+. +.|..+++.. .....+. ........++++|++.+|+.+...
T Consensus 109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence 64432222222224678999999655544443 4788888753 3333332 233457899999998888777766
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCccccccc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~ 290 (630)
.+.|.++++...... .... ...... .++. ++..|..+. ..+.|.++|..+++.+...
T Consensus 188 ~~~I~~~~~~g~~~~---~~~~--~~~~P~-gi~~-------d~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 188 THRAECLNPAQPGRR---KVLE--GLQYPF-AVTS-------YGKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp TTEEEEEETTEEEEE---EEEE--CCCSEE-EEEE-------ETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCCCceE---EEec--CCCCce-EEEE-------eCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 789999998764322 1111 111111 2222 344555544 5689999999888765544
No 244
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.73 E-value=7.2e-07 Score=83.17 Aligned_cols=173 Identities=9% Similarity=0.045 Sum_probs=118.4
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.|+ ++.++.+.+.+|.|+++|+.+|+.+..+ - ...... .. +.. . ++.+.++
T Consensus 61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~Fg-------------eG---it~--~--------g~~Ly~l 111 (268)
T 3nok_A 61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFA-------------EG---LAS--D--------GERLYQL 111 (268)
T ss_dssp EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCE-------------EE---EEE--C--------SSCEEEE
T ss_pred EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcce-------------eE---EEE--e--------CCEEEEE
Confidence 565 3556667777889999999999988766 1 111110 00 110 0 0333444
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC--C---CeEEEE
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST--K---GISCMA 166 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~---~v~~l~ 166 (630)
.-.++.+.+||..+.+.+.++..+ ..-.+++ ++++.|+.+..++.|.++|..+.+.+.++.... . .+..+.
T Consensus 112 tw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 112 TWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp ESSSCEEEEEETTTTEEEEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EccCCEEEEEECCcCcEEEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 445678999999999998777543 2223343 578888888888999999999999888876422 1 345677
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------------CCCeEEEEEeeCCcEEEEEe
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~~~~ 218 (630)
|. +|..++... +.|.+.|..+++.+..+.-. ..-.+.|+|+|+++.|+++|
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 77 776555543 79999999999988776421 12468999999887777776
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.70 E-value=4.1e-06 Score=77.44 Aligned_cols=175 Identities=10% Similarity=0.119 Sum_probs=118.4
Q ss_pred EECCCCCEEEEeeCC--CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.|++ +.++.+.+.+ ..|+++|+.+|+.+..+.-... .....+ ... ++.+.
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------------~fgeGi---~~~----------~~~ly 78 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------------YFGAGI---VAW----------RDRLI 78 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------------CCEEEE---EEE----------TTEEE
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------------cceeEE---EEe----------CCEEE
Confidence 6765 5555666654 4899999999999887752211 000001 100 03334
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-----CCeEE
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (630)
.+.-.++.+.+||..+.+.+.++..+.. -.++ .++++.|+.+..++.|.++|..+.+.+.++.... ..+.-
T Consensus 79 ~ltw~~~~v~v~D~~tl~~~~ti~~~~~--Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLTPRARFRYPGE--GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEECSSC--CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECCcCcEEEEEeCCCC--ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 4444577899999999999887754322 2344 4577778777778999999999999888876532 24456
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------------CCCeEEEEEeeCCcEEEEEee
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+.+. +|+.++..- +.|.+.|..+++.+..+.-. ..-.+.|+|+|+++.|+++|.
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6665 666555543 79999999999988876521 124688999998888888773
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.68 E-value=2.3e-06 Score=84.82 Aligned_cols=175 Identities=18% Similarity=0.253 Sum_probs=116.1
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
..+++++.++.|..||.. ++....+.. ....+.++.+.++|. ++.++ +.+..+| .+++....+......+.++.
T Consensus 148 g~l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~ 221 (330)
T 3hxj_A 148 GTIYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPA 221 (330)
T ss_dssp SCEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCE
T ss_pred CEEEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceE
Confidence 347788888999999999 776655542 334566777777776 55555 7899999 77877777665556788899
Q ss_pred EccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 167 VSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 167 ~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
+.++|.+.+.+. +.+..+|. +++.+..+......+..+.+.+++. |.+++ .++.|..+|. +++.. ..+. .
T Consensus 222 ~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-~~ggl~~~d~-~g~~~---~~~~--~ 292 (330)
T 3hxj_A 222 ISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGS-YDGHLYAINP-DGTEK---WNFE--T 292 (330)
T ss_dssp ECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEEC-TTCEEEEECT-TSCEE---EEEE--C
T ss_pred ECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEec-CCCCEEEECC-CCcEE---EEEE--c
Confidence 999987777665 78888874 5666666654444445566666665 44555 4778999985 44422 1222 2
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
....+...... ++|. |..++.+|.+++...+
T Consensus 293 ~~~~~~~~~~d-----~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 293 GSWIIATPVID-----ENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp SSCCCSCCEEC-----TTCC-EEEECTTSCEEEEEC-
T ss_pred CCccccceEEc-----CCCE-EEEEcCCCeEEEEecc
Confidence 23333444443 4554 6678899999987654
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.63 E-value=3.6e-05 Score=73.66 Aligned_cols=194 Identities=8% Similarity=-0.079 Sum_probs=117.1
Q ss_pred EeEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|++++..|..+ ...+.|.+++..++.....+.... .....+++.+.. +.+
T Consensus 40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------------------~~p~~ia~d~~~--------~~l 93 (267)
T 1npe_A 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL------------------GSPEGIALDHLG--------RTI 93 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC------------------CCEEEEEEETTT--------TEE
T ss_pred EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC------------------CCccEEEEEecC--------CeE
Confidence 45889876655544 457889999987554322221100 122344444331 334
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeEEee-cCCCCeEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFR-ASTKGISC 164 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~~~~~~~~~-~~~~~v~~ 164 (630)
.++-...+.|.++++...... .+..........++++|++..|+.+.. .+.|..+++.. .....+. ........
T Consensus 94 yv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 94 FWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNG 171 (267)
T ss_dssp EEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEE
T ss_pred EEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcE
Confidence 444445678999998754332 222222246789999997666666553 36888888753 3333332 23346789
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
++++|++..|..+. +.|.++|+........+.+ ......+++. +.+++++....+.|.+++..+++.
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence 99999877776655 7999999875543333332 2334566654 556666665578999999987763
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.62 E-value=8.4e-06 Score=87.26 Aligned_cols=244 Identities=17% Similarity=0.115 Sum_probs=146.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccc-cccccccccccccccceeeEEecccccccccccCCc-EEEEEeC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS-LLVLGTG 94 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~l~~~~~ 94 (630)
+..++.++.|+.|..+|..+|+.+..+........ ...-+|. +. . +.. .+. .+++++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~------------v~-~--~~~-----~G~~~v~vg~~ 176 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT------------IV-K--DGK-----TGKVLLIHGSS 176 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE------------EE-E--CTT-----TCCEEEEECCB
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE------------Ee-C--CCc-----CCcEEEEEecc
Confidence 55777888899999999999999877653221100 0000010 00 0 000 011 5666553
Q ss_pred ------CCeEEEEEccCCeeeEEccCCCC----------------------------------------CCEEEEEEecC
Q 006808 95 ------GGDVLALAVSAGQLKWRLSDCHP----------------------------------------GGVSAISFATH 128 (630)
Q Consensus 95 ------~g~v~iwd~~~~~~~~~~~~~h~----------------------------------------~~v~~~~~s~~ 128 (630)
+|.|.-+|..+|+.+++...... ..-..+++.|.
T Consensus 177 ~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~ 256 (582)
T 1flg_A 177 GDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE 256 (582)
T ss_dssp CGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT
T ss_pred ccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCC
Confidence 68899999999998876532100 00013566777
Q ss_pred CCEEEEEeC--------------------C----CcEEEEeCCCCceeEEeec--CC--------CCeEEEEEc-cCCC-
Q 006808 129 GSCIYSAGA--------------------D----GMVCEIDPLTGSLLGKFRA--ST--------KGISCMAVS-SDGK- 172 (630)
Q Consensus 129 g~~l~s~~~--------------------d----g~v~iwd~~~~~~~~~~~~--~~--------~~v~~l~~~-p~~~- 172 (630)
...++.+.. | +.|..+|..+|+.+..++. |. .++. +... .+|+
T Consensus 257 ~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~ 335 (582)
T 1flg_A 257 TNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKI 335 (582)
T ss_dssp TTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCE
T ss_pred CCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCE
Confidence 777776653 2 5899999999999888764 21 1221 2222 4664
Q ss_pred --EEEEeC--CeEEEEECCCCceeeEeecCC-------------CC--------------------------------eE
Q 006808 173 --MLATAA--GQLKTFNCSDHKKMQKFSGHP-------------GA--------------------------------VR 203 (630)
Q Consensus 173 --~l~~~~--g~i~lwd~~~~~~~~~~~~h~-------------~~--------------------------------v~ 203 (630)
.++.++ |.++++|..+|+.+..+.... .+ -.
T Consensus 336 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~ 415 (582)
T 1flg_A 336 VKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWN 415 (582)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSS
T ss_pred EEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCC
Confidence 566666 899999999998876654321 00 01
Q ss_pred EEEEeeCCcEEEEEee--------------------------------CCCeEEEEEcCCCccccceeeeeecCCceeee
Q 006808 204 FMTFSDNGKYVLSSAV--------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMD 251 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~--------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 251 (630)
.++++|+...+++... .++.|..||+.+++.. .......+ ...
T Consensus 416 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~---W~~~~~~~--~~~ 490 (582)
T 1flg_A 416 PMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV---WEHKEHLP--LWA 490 (582)
T ss_dssp CCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE---EEEEESSC--CCS
T ss_pred CceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE---EEecCCCC--Ccc
Confidence 3456665555544321 2578999999888744 22222211 111
Q ss_pred eEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 252 CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 252 ~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
.... ..+..++.++.||.++.||.++|+.+-..+.
T Consensus 491 g~~~------tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 491 GVLA------TAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCEE------ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceE------eCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 1111 2356788899999999999999998876554
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.60 E-value=1.8e-05 Score=78.16 Aligned_cols=250 Identities=14% Similarity=0.084 Sum_probs=136.0
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEeccccccccccccccc--ccccccccceeeEEecccccccccccCCcE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR--LEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++|+++|+++.++..++.|..|+..++... .+............... ............+++.+. ...
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---------~g~ 93 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ---------NNQ 93 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT---------TTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCC---------CCc
Confidence 489999997888888899999998765543 22211000000000000 000000112334554432 234
Q ss_pred EEEEeCCCeEEEEEccCCeeeE--EccCC-CCCCEEEEEEec-CCCEEEEEeC-----------------CCcEEEEeCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKW--RLSDC-HPGGVSAISFAT-HGSCIYSAGA-----------------DGMVCEIDPL 147 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~--~~~~~-h~~~v~~~~~s~-~g~~l~s~~~-----------------dg~v~iwd~~ 147 (630)
|+++...+.|..+|..++.... ....+ .......+++.+ +|+..++-.. ++.|..||..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 6667666668888887654321 11111 113578899999 8976665432 3678899987
Q ss_pred CCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCc--eeeEeecCCCCeEEEEEeeCCcEEEEEee---
Q 006808 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAV--- 219 (630)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~~~~~--- 219 (630)
+++....... ......++|+|+|++|.++. +.|+.|++.... ....+....+ ...+++.++|+++++...
T Consensus 174 ~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 174 TKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp TTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETT
T ss_pred CCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccc
Confidence 7764332221 23346799999998766653 799999987531 1222221223 788999999986665431
Q ss_pred ------CCCeEEEEEcCCCccccceeeeeecCC--ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 220 ------GERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 220 ------~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..+.|..++.. ++.. ..+..... ......+++ .++.+.++....+.|..+++.
T Consensus 252 ~~~~~~~~~~v~~~d~~-G~~~---~~~~~~~g~~~~~~~~~~~------~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDEF-GNIL---EVIPLPPPFAGEHFEQIQE------HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp SSTTSCEEEEEEEECTT-SCEE---EEEECCTTTTTSCCCEEEE------ETTEEEEECSSCSEEEEEEC-
T ss_pred ccccCCCccEEEEECCC-CCEE---EEEECCCCCccccceEEEE------eCCEEEEeecCCCceEEEecc
Confidence 03457777764 3321 12222111 122233333 345555555567788888864
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.58 E-value=2.9e-05 Score=73.31 Aligned_cols=182 Identities=13% Similarity=0.059 Sum_probs=122.5
Q ss_pred EEEEEeC---CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEEeecC-CCCe
Q 006808 88 LLVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-TKGI 162 (630)
Q Consensus 88 ~l~~~~~---~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-~~~v 162 (630)
.|+.++. ++.|.++|+.+++.+..+..+.......+++. |+.++.+. .++.+.++|..+++.+.++... ..
T Consensus 33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~-- 108 (266)
T 2iwa_A 33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD-- 108 (266)
T ss_dssp EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--
T ss_pred eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--
Confidence 4566554 46799999999998877643332334456664 55665554 6789999999999999998754 22
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC--C---CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--P---GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
...++++|+.++++. +.|.++|..+.+.+..+.-. . ..++.+.|. +|. +++....++.|.+.|..+++..
T Consensus 109 -g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 109 -GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLL 185 (266)
T ss_dssp -CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEE
T ss_pred -eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEE
Confidence 234566777776665 89999999998887776522 1 236788888 674 5555545789999999998754
Q ss_pred cceeeeeec-----------CCceeeeeEEecCCccCCCCCEE-EEEecCCcEEEEEcCCc
Q 006808 236 SASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNI 284 (630)
Q Consensus 236 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~ 284 (630)
....+. ........+.+. |+++.+ +++...+.+++.++...
T Consensus 186 ---~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-----~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 186 ---GWILLPNLRKKLIDEGFRDIDVLNGIAWD-----QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ---EEEECHHHHHHHHHTTCTTCCCEEEEEEE-----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ---EEEECCCcccccccccccccCceEEEEEc-----CCCCEEEEECCCCCeEEEEEEecc
Confidence 122221 112345566666 787655 55556788888887554
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.55 E-value=9.2e-06 Score=88.74 Aligned_cols=198 Identities=14% Similarity=0.177 Sum_probs=125.5
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..+++++.++.|.-+|..+|+.+..+.............. ....... ..+ +..+++++.+|
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~--~~~------------~~~v~v~~~dg 127 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCC----DAVNRGV--ALW------------GDKVYVGTLDG 127 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTT----CSCCCCC--EEE------------BTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccc----cCCccce--EEE------------CCEEEEEcCCC
Confidence 45677777889999999999999988764322111000000 0000000 001 56788999999
Q ss_pred eEEEEEccCCeeeEEccCCCC---CCEEE-EEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecCC-C-----
Q 006808 97 DVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST-K----- 160 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~---~~v~~-~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~-~----- 160 (630)
.|..+|..+|+.++++..... ..+.+ ..+ .+..++.++. +|.|..+|..+|+.+..+.... .
T Consensus 128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 205 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY 205 (668)
T ss_dssp EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence 999999999999887754221 11111 111 1335555543 5899999999999988775311 0
Q ss_pred -------------------------CeEEEEEccCCCEEEEeC--C-------------------eEEEEECCCCceeeE
Q 006808 161 -------------------------GISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK 194 (630)
Q Consensus 161 -------------------------~v~~l~~~p~~~~l~~~~--g-------------------~i~lwd~~~~~~~~~ 194 (630)
....+++.|+...++++. + .|..+|..+|+.+-.
T Consensus 206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~ 285 (668)
T 1kv9_A 206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH 285 (668)
T ss_dssp SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE
Confidence 112468888777777765 3 399999999998877
Q ss_pred eec--CC-------CCeEEEEEeeCCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 195 ~~~--h~-------~~v~~l~~sp~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+.. |. .+.....+..+|+ .++.++ .+|.++++|..+++..
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred eecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEe
Confidence 753 22 2333334445675 466655 7999999999998754
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.51 E-value=4.7e-05 Score=81.38 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=118.9
Q ss_pred CCEEEEeeC-CCcEEEEEC-CCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC
Q 006808 17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (630)
Q Consensus 17 g~~las~s~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (630)
+..++.++. ++.|.-+|. .+|+.+..+........... +. +....... ..+ +..+++++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~--~~--~~~~~~~~--~~~------------~~~v~v~~~ 123 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAV--MC--CDVVDRGL--AYG------------AGQIVKKQA 123 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGG--CT--TCSCCCCC--EEE------------TTEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccc--cc--cccccccc--EEE------------CCEEEEEeC
Confidence 345666666 899999999 89999887753221100000 00 00000000 000 567889999
Q ss_pred CCeEEEEEccCCeeeEEccCCC-C--CCEEE-EEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecCCCC---
Q 006808 95 GGDVLALAVSAGQLKWRLSDCH-P--GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG--- 161 (630)
Q Consensus 95 ~g~v~iwd~~~~~~~~~~~~~h-~--~~v~~-~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~--- 161 (630)
++.|..+|..+|+.+++..... . ..+.+ ... .+..++.++. ++.|..+|..+|+.+..+......
T Consensus 124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred CCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 9999999999999987764321 0 01111 111 1345666654 789999999999988776542210
Q ss_pred -----------------------------------eEEEEEccCCCEEEEeCC------------------eEEEEECCC
Q 006808 162 -----------------------------------ISCMAVSSDGKMLATAAG------------------QLKTFNCSD 188 (630)
Q Consensus 162 -----------------------------------v~~l~~~p~~~~l~~~~g------------------~i~lwd~~~ 188 (630)
...+++.+....++.+.+ .|..+|..+
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 023566676556655542 599999999
Q ss_pred CceeeEeec--CC--------CCeEEEEEeeCCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 189 HKKMQKFSG--HP--------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 189 ~~~~~~~~~--h~--------~~v~~l~~sp~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|+.+-.+.. |. .++. +...++|+ .++.++ .+|.++++|..+++..
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI 339 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeC-CCcEEEEEECCCCCEE
Confidence 998877652 21 2221 23335775 344554 6899999999988754
No 253
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.45 E-value=0.00045 Score=67.80 Aligned_cols=230 Identities=7% Similarity=-0.038 Sum_probs=133.0
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeE
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v 98 (630)
+|+.+.. ..|+..++.++.....+.. ......+.|.+.. +.++++-...+.|
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-------------------~~~p~g~~~d~~~--------~~ly~~D~~~~~I 54 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-------------------LRNVVALDTEVAS--------NRIYWSDLSQRMI 54 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS-------------------CSSEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC-------------------CCceEEEEEEeCC--------CEEEEEECCCCcE
Confidence 3444433 5789999887765443321 1123456665542 3344444556789
Q ss_pred EEEEccC---CeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 99 LALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 99 ~iwd~~~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
..+++.. +.....+....-..+.++++.+.+..|+ +-...+.|.++++........+.........++++|.+..|
T Consensus 55 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~l 134 (316)
T 1ijq_A 55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 134 (316)
T ss_dssp EEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred EEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEE
Confidence 9999876 1222222222223568899987555554 54567899999987544333333334567899999966655
Q ss_pred EEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-CCce
Q 006808 175 ATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAV 248 (630)
Q Consensus 175 ~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~ 248 (630)
+.+. +.|..+++. |.....+ ...-.....++++|++..|+.+....+.|..+++...... .+.... ....
T Consensus 135 y~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~---~~~~~~~~~~~ 210 (316)
T 1ijq_A 135 YWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAH 210 (316)
T ss_dssp EEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSS
T ss_pred EEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE---EEeecCCccCC
Confidence 4443 578888874 4333333 2233567899999988888777766789999998754322 122211 1112
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
... +++. .+..+++-...+.|..++..+++.+
T Consensus 211 P~g-iav~------~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 211 PFS-LAVF------EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEE-EEEE------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred cEE-EEEE------CCEEEEEECCCCeEEEEeCCCCcce
Confidence 222 2222 2455555556778998887666543
No 254
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.42 E-value=4.7e-05 Score=84.48 Aligned_cols=191 Identities=11% Similarity=0.029 Sum_probs=108.0
Q ss_pred EeEEC-CCCCEEEEeeC-CC----cEEEEECCCC-cEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 10 LTSFS-PALDYFAICSG-DA----RIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 10 ~~~fs-~dg~~las~s~-dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+|| |||++||.+.. +| +|+++|+.+| +.+.. ........+.|.+.
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------------------~~~~~~~~~~WspD------ 231 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------------------KVSGTNGEIVWGPD------ 231 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--------------------CEEEECSCCEECSS------
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--------------------cccCceeeEEEecC------
Confidence 45899 99999986643 22 4999999988 53210 00001224556554
Q ss_pred ccCCcEEEEEeCC-----CeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCc-e
Q 006808 83 KLGSSLLVLGTGG-----GDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGS-L 151 (630)
Q Consensus 83 ~~~~~~l~~~~~~-----g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~~~-~ 151 (630)
++.|+....+ ..|+++++.++.. ...+...+.....++.|+|||++|+..+. ...|.++|+.++. .
T Consensus 232 ---g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 232 ---HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp ---TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred ---CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 4445554443 2588888877642 11221123345678899999998776542 3468888988752 2
Q ss_pred e--EEe-ecCCCCeEEEEEccCCCEEEEeC------CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 152 L--GKF-RASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 152 ~--~~~-~~~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
. ..+ ........++.|+.++.+++.+. ..|..+++.++..... +..|...+.--.+++.+.+|+.....+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~ 388 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA 388 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET
T ss_pred ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC
Confidence 2 333 32334556666555444444433 3788888865322223 333443333233455566776666567
Q ss_pred Ce--EEEEEc
Q 006808 222 RY--IALWRT 229 (630)
Q Consensus 222 ~~--i~vwd~ 229 (630)
+. |.++++
T Consensus 389 g~~~l~~~dl 398 (751)
T 2xe4_A 389 GLTRIWTMMA 398 (751)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEEec
Confidence 75 555564
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.40 E-value=1.5e-05 Score=74.23 Aligned_cols=157 Identities=11% Similarity=0.083 Sum_probs=103.7
Q ss_pred CEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceee
Q 006808 119 GVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~ 193 (630)
...++.|+ ++.++.+.+.+| .|+.+|+.+++.+..+.... ......+.+++..|.... +.+.+||..+.+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 35889998 666666666665 89999999999998887543 333433344455555544 899999999999999
Q ss_pred EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCce---eeeeEEecCCccCCCCCEEEEE
Q 006808 194 KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLAI 270 (630)
Q Consensus 194 ~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~ 270 (630)
+++... ....+++++..|+.+. .++.|.++|..+.+... ......... .+.-+.+ .+|...+..
T Consensus 122 ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~---~I~V~~~g~~~~~lNELe~------~~G~lyan~ 188 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR---TITVTAHGEELPELNELEW------VDGEIFANV 188 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---EEECEETTEECCCEEEEEE------ETTEEEEEE
T ss_pred EEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---EEEeccCCccccccceeEE------ECCEEEEEE
Confidence 987432 2234457788887766 47889999998876441 112211111 1222333 256544444
Q ss_pred ecCCcEEEEEcCCccccccc
Q 006808 271 SETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 271 s~dg~i~iwd~~~~~~~~~~ 290 (630)
-.++.|.+.|..+++.+...
T Consensus 189 w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEE
T ss_pred ccCCeEEEEECCCCcEEEEE
Confidence 45789999999998875543
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.37 E-value=1.7e-05 Score=73.96 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=102.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeE
Q 006808 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~ 194 (630)
....++.|+ ++.++.+.+.+|.|+.+|+.+++.+..+ ... ........+++..|.... +.+.+||..+.+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 445789997 3556677788889999999999998887 333 333322333444444443 8999999999999999
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCce--eeeeEEecCCccCCCCCEEEEEec
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
++.... -..+ .++++.|+.+. .++.|.++|..+.+.... +........ .+.-+.+ .+|...+..-.
T Consensus 132 i~~~~e-GwGL--t~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~--I~V~~~g~~v~~lNeLe~------~dG~lyanvw~ 199 (268)
T 3nok_A 132 TRYSGE-GWGL--CYWNGKLVRSD-GGTMLTFHEPDGFALVGA--VQVKLRGQPVELINELEC------ANGVIYANIWH 199 (268)
T ss_dssp EECSSC-CCCE--EEETTEEEEEC-SSSEEEEECTTTCCEEEE--EECEETTEECCCEEEEEE------ETTEEEEEETT
T ss_pred EeCCCc-eeEE--ecCCCEEEEEC-CCCEEEEEcCCCCeEEEE--EEeCCCCcccccccccEE------eCCEEEEEECC
Confidence 874322 2333 46788888876 588999999988764411 111111111 1222333 25654444445
Q ss_pred CCcEEEEEcCCccccccc
Q 006808 273 TGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 273 dg~i~iwd~~~~~~~~~~ 290 (630)
++.|.+.|..+++.+...
T Consensus 200 s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp CSEEEEECTTTCBEEEEE
T ss_pred CCeEEEEeCCCCcEEEEE
Confidence 779999999998876544
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.35 E-value=0.0002 Score=70.07 Aligned_cols=188 Identities=13% Similarity=0.041 Sum_probs=107.7
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++|+++|+++++-..++.|..||... .....+.. . .....+++.+. ++++
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~------------------~~p~gia~~~d---------G~l~ 86 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-E------------------GKVSGLAFTSN---------GDLV 86 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-S------------------SEEEEEEECTT---------SCEE
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-C------------------CCceeEEEcCC---------CcEE
Confidence 458999998777766788999998764 33322221 1 12334444432 5544
Q ss_pred EEEeCC-C-eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eEEe-------e--c
Q 006808 90 VLGTGG-G-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKF-------R--A 157 (630)
Q Consensus 90 ~~~~~~-g-~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-~~~~-------~--~ 157 (630)
++.... + .|..++..+++...............++..+++..+++-..++.|..+|...++. +... . .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 443332 2 4777787777653222112223345666655554444444688999999875431 1110 0 0
Q ss_pred CCCCeEEEEEccCCCEEEEeC---CeEEEEECCC-Cce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
.-.....+ +|++..|+++. +.|+.|++.. ++. ...+.. ......+++.++|+++++.. ..+.|.+++..
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~ 241 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD 241 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECTT
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECCC
Confidence 11234555 88887776665 7999999874 332 122221 13456789999997655543 57789999875
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.00072 Score=68.40 Aligned_cols=200 Identities=6% Similarity=-0.069 Sum_probs=120.1
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~ 146 (630)
...++|.+.. +.++++-...+.|..+++..+.....+. .......++++.+.+..| ++-...+.|.+.++
T Consensus 118 ~~gl~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~ 188 (386)
T 3v65_B 118 AIALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 188 (386)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEETTSCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred cEEEEEecCC--------CeEEEEeCCCCcEEEEecCCCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence 3456676543 3444455566789999988765432222 222346788998755555 45556678888887
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
........+.........++++|.+..|+.+. +.|..+++............-.....|+|+|++..|+.+....+
T Consensus 189 dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence 65443333333335678999999766666554 57888887543322222233345789999998887877776678
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.|..+++...... .+.. ........+..+ .+..+++-...+.|..++..+|+.+
T Consensus 269 ~I~~~d~dG~~~~---~~~~-~~~~~P~giav~-------~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 269 VIERANLDGSHRK---AVIS-QGLPHPFAITVF-------EDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEEEECTTSCSCE---EEEC-SSCSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEEeCCCCeeE---EEEE-CCCCCceEEEEE-------CCEEEEeeCCCCeEEEEECCCCcce
Confidence 8999998754322 1111 111122222222 3445555556778888886666543
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.30 E-value=0.0015 Score=64.90 Aligned_cols=199 Identities=6% Similarity=-0.063 Sum_probs=118.9
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~ 146 (630)
...++|.+.. +.++++-...+.|..+++..+.....+. .......++++.+.+..| ++-...+.|.+.++
T Consensus 75 ~~~l~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 145 (349)
T 3v64_C 75 AIALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 145 (349)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eEEEEEeccc--------cEEEEEeccCCceEEEecCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence 3456776543 3344444566789999988765432222 222456789998755554 55556778999998
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
........+.........++++|.+..|+.+. +.|..+++... ....+ ...-.....++|+|++..|+.+....
T Consensus 146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCC
Confidence 75443333333335678999999666655554 56888887543 33333 22334578999999888887777667
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
+.|..+++...... .+.. ........+..+ .+...++-...+.|..++..+|+.+
T Consensus 225 ~~I~~~~~dG~~~~---~~~~-~~~~~P~giav~-------~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 225 HVIERANLDGSHRK---AVIS-QGLPHPFAITVF-------EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp TEEEEEETTSCSCE---EEEC-SSCSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CEEEEEeCCCCceE---EEEe-CCCCCceEEEEE-------CCEEEEecCCCCeEEEEEccCCCcc
Confidence 88999998764322 1111 111112222222 2444555555778888876566543
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.30 E-value=6.2e-05 Score=69.53 Aligned_cols=158 Identities=10% Similarity=0.019 Sum_probs=102.2
Q ss_pred CCEEEEEEecCCCEEEEEeCC--CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCcee
Q 006808 118 GGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM 192 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~ 192 (630)
....++.|++ +.++.+.+.+ ..|+.+|+.+++.+..+..... .....+.+.+..|.... +.+.+||..+.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4577999986 5555566665 4899999999999988775433 23333333345555444 89999999999999
Q ss_pred eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCc---eeeeeEEecCCccCCCCCEEEE
Q 006808 193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDDAGLYVLA 269 (630)
Q Consensus 193 ~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~s 269 (630)
.+++..... . .+.+++..|+++. .++.|.++|..+.+... ........ ..+.-+.+ .+|...+.
T Consensus 99 ~ti~~~~~G-w--glt~dg~~L~vSd-gs~~l~~iDp~t~~~~~---~I~V~~~g~~~~~lNeLe~------~~G~lyan 165 (243)
T 3mbr_X 99 ARFRYPGEG-W--ALTSDDSHLYMSD-GTAVIRKLDPDTLQQVG---SIKVTAGGRPLDNLNELEW------VNGELLAN 165 (243)
T ss_dssp EEEECSSCC-C--EEEECSSCEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEE------ETTEEEEE
T ss_pred EEEeCCCCc-e--EEeeCCCEEEEEC-CCCeEEEEeCCCCeEEE---EEEEccCCcccccceeeEE------eCCEEEEE
Confidence 998743322 3 3446787777776 58899999998876441 11221111 11222223 24555544
Q ss_pred EecCCcEEEEEcCCccccccc
Q 006808 270 ISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.-.+..|.+.|..+++.+...
T Consensus 166 vw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEE
T ss_pred ECCCCeEEEEECCCCCEEEEE
Confidence 445779999999999875543
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.28 E-value=0.0015 Score=66.35 Aligned_cols=232 Identities=6% Similarity=-0.047 Sum_probs=135.5
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeE
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v 98 (630)
+|+.+. ...|+..++........+.. ......++|.+.. +.++++-...+.|
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-------------------~~~~~~l~~d~~~--------~~lywsD~~~~~I 136 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-------------------LRNVVALDTEVAS--------NRIYWSDLSQRMI 136 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS-------------------CSCEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccc-------------------cCcceEEeeeecc--------CceEEEecCCCeE
Confidence 444443 36788888776544332221 1133456666543 3334444456778
Q ss_pred EEEEccCCe---eeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 99 LALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 99 ~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
+.+++.... ....+.........++++.+.++. +++-...+.|.+.++........+.........|+++|.+..|
T Consensus 137 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 137 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp EEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred EEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence 888886521 111222223456889999985444 4555567889999987555444444344467899999966555
Q ss_pred EEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-CCcee
Q 006808 175 ATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVF 249 (630)
Q Consensus 175 ~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~ 249 (630)
+.+. +.|...++........+...-.....|+++|++..|+.+....+.|..+++...... .+.... .....
T Consensus 217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~~~~~~~l~~P 293 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHP 293 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE---EEEECSSTTSSE
T ss_pred EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE---EEEeCCCCCCCC
Confidence 5544 578888875433322223333567899999988888887766789999998765432 122211 11222
Q ss_pred eeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
..+..+ .+..+.+-...+.|..+|..+|+.+.
T Consensus 294 ~gl~v~-------~~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 294 FSLAVF-------EDKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp EEEEEE-------TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred EEEEEe-------CCEEEEecCCCCeEEEEEcCCCCceE
Confidence 222223 24455555667889999977776544
No 262
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.26 E-value=0.00061 Score=66.79 Aligned_cols=201 Identities=6% Similarity=-0.048 Sum_probs=119.5
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~ 146 (630)
...+.|.+.. +.++.+-...+.|..+++..+.....+....-....++++.+.+..| ++-...+.|.++++
T Consensus 37 ~~~ld~d~~~--------~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 108 (318)
T 3sov_A 37 AAAVDFVFSH--------GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEGGG--------TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEeCC--------CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence 3456776653 34444555567799999876632111111122356789998755554 55556788999998
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
........+.........+++.|.+..|+.+. +.|..+++.. .....+ ...-.....++|+|++..|+.+....
T Consensus 109 dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 109 DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCC
Confidence 65433222333445678999999655554443 5788888753 333333 22234568999999888887777677
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
+.|..+++...... .+.. ........+..+ .+..+.+-...+.|..++..+|+...
T Consensus 188 ~~I~~~d~dG~~~~---~~~~-~~~~~P~glav~-------~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 188 NFIHKSNLDGTNRQ---AVVK-GSLPHPFALTLF-------EDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp TEEEEEETTSCSCE---EEEC-SCCSCEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CEEEEEcCCCCceE---EEec-CCCCCceEEEEe-------CCEEEEEecCCCeEEEEECCCCCceE
Confidence 89999998754322 1111 111222222222 23445555567789999987776543
No 263
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.23 E-value=0.0027 Score=71.05 Aligned_cols=245 Identities=9% Similarity=0.119 Sum_probs=144.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .++..+++|.+ ..|+.++-|..|+..++.... +..... .. +-....+.++....
T Consensus 310 ~~i--~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~~-~~----------~l~~~~V~~i~~d~-------- 366 (795)
T 4a2l_A 310 RSV--RSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKN-IRNIPY-KN----------SLSDNVVSCIVEDK-------- 366 (795)
T ss_dssp SCE--EEEEECTTSCE-EEEESSSCEEEECGGGGSSEE-ECCCTT-SS----------SCSCSSEEEEEECT--------
T ss_pred CcE--EEEEEeCCcCE-EEEECCCCeEEeCCCcccceE-EcCCCC-CC----------CCCCCeeEEEEECC--------
Confidence 356 44477788764 456666778888866554322 211000 00 11122344444332
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccC-------CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~-------~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
...|.+|+.++-|..|+..++....-... -....|.++...++|+.|+.|+.++-+..||..+++......
T Consensus 367 --~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 367 --DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ 444 (795)
T ss_dssp --TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred --CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence 33477888888899999988765422211 123579999998888767778877779999988776433221
Q ss_pred ----cCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeec------CCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 157 ----ASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 157 ----~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.....|.++...++|.+.+.+.+-+.+||..+++....... +...|.++...++|...+.+ . +-|..
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~-~Gl~~ 521 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG--E-EGLSV 521 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE--S-SCEEE
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe--C-CceEE
Confidence 12457899999998887776666688999887654322111 23568999988888765543 3 45888
Q ss_pred EEcCCCccccceee-eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 227 WRTDGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 227 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
|+..+.... .... .....+...+.++... ++|...+ ++.. -|..||..++
T Consensus 522 ~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d-----~~g~lWi-gT~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 522 FKQEGLDIQ-KASILPVSNVTKLFTNCIYEA-----SNGIIWV-GTRE-GFYCFNEKDK 572 (795)
T ss_dssp EEEETTEEE-ECCCSCSCGGGGSCEEEEEEC-----TTSCEEE-EESS-CEEEEETTTT
T ss_pred EeCCCCeEE-EecCCCCCCCCCCeeEEEEEC-----CCCCEEE-EeCC-CceeECCCCC
Confidence 887665420 0000 0001122234445444 5666544 4444 5788887655
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.22 E-value=0.00033 Score=74.80 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=95.8
Q ss_pred CcEEEEEeCCC----------------eEEEEEccCCeeeEEccCCCC---------CCEEEEEEe-cCC---CEEEEEe
Q 006808 86 SSLLVLGTGGG----------------DVLALAVSAGQLKWRLSDCHP---------GGVSAISFA-THG---SCIYSAG 136 (630)
Q Consensus 86 ~~~l~~~~~~g----------------~v~iwd~~~~~~~~~~~~~h~---------~~v~~~~~s-~~g---~~l~s~~ 136 (630)
..++++++.++ .|..+|..+|+.++.+...|. .++. +... .+| ..++.++
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~ 330 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD 330 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC
Confidence 56777777663 799999999999887764432 1222 2222 467 4677788
Q ss_pred CCCcEEEEeCCCCceeEEeecCC-------------CCe--------------------------EEEEEccCCCEEEEe
Q 006808 137 ADGMVCEIDPLTGSLLGKFRAST-------------KGI--------------------------SCMAVSSDGKMLATA 177 (630)
Q Consensus 137 ~dg~v~iwd~~~~~~~~~~~~~~-------------~~v--------------------------~~l~~~p~~~~l~~~ 177 (630)
.+|.++++|..+|+.+....... .++ ..++++|+..++++.
T Consensus 331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~ 410 (599)
T 1w6s_A 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG 410 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence 99999999999999877654211 011 235566655444331
Q ss_pred ----------------------------------------C-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 178 ----------------------------------------A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 178 ----------------------------------------~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
. |.+..||+.+++.+-+... ..+...-.+...+..++.
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~ 489 (599)
T 1w6s_A 411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFY 489 (599)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEE
T ss_pred ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEE
Confidence 2 5788899999987766642 122221122334566666
Q ss_pred EeeCCCeEEEEEcCCCccc
Q 006808 217 SAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~ 235 (630)
++ .|+.|+.||..+++..
T Consensus 490 gt-~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 490 GT-LDGYLKARDSDTGDLL 507 (599)
T ss_dssp EC-TTSEEEEEETTTCCEE
T ss_pred EC-CCCeEEEEECCCCCEE
Confidence 65 6999999999999855
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.18 E-value=0.00045 Score=67.98 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=112.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeE-EccCC-----------------CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKW-RLSDC-----------------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~-~~~~~-----------------h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+.+++++..++.|..|+..++.... ..... ....+.++++.+++..|+.+...+.+..+|..
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~ 109 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSE 109 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTT
T ss_pred CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCC
Confidence 5667888889999999988765431 11000 01357899999833356666555558889876
Q ss_pred CCceeEEeec-----CCCCeEEEEEcc-CCCEEEEeC-------------------CeEEEEECCCCceeeEeecCCCCe
Q 006808 148 TGSLLGKFRA-----STKGISCMAVSS-DGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAV 202 (630)
Q Consensus 148 ~~~~~~~~~~-----~~~~v~~l~~~p-~~~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v 202 (630)
++.. ..+.. .......+++.| +|.++++.. +.|..||..+++...... .....
T Consensus 110 ~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p 187 (322)
T 2fp8_A 110 GGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVP 187 (322)
T ss_dssp CEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCC
T ss_pred CCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccC
Confidence 5532 22221 112468899999 998777642 468888987775432222 22334
Q ss_pred EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec----------
Q 006808 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------- 272 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---------- 272 (630)
..++|+|++++|+++....+.|.+|++........ ..+. .... ..-+++. ++|.+.++...
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~-~~~~-~~~g--P~gi~~d-----~~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA-EVLV-KIPN--PGNIKRN-----ADGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE-EEEE-ECSS--EEEEEEC-----TTSCEEEEEEEETTSSTTSCE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc-ceEE-eCCC--CCCeEEC-----CCCCEEEEecCcccccccCCC
Confidence 67999999997777755568899999875321100 1111 1112 3444555 78876666544
Q ss_pred CCcEEEEEc
Q 006808 273 TGVCYIWYG 281 (630)
Q Consensus 273 dg~i~iwd~ 281 (630)
.+.|..+|.
T Consensus 259 ~~~v~~~d~ 267 (322)
T 2fp8_A 259 DPKGIKFDE 267 (322)
T ss_dssp EEEEEEECT
T ss_pred ccEEEEECC
Confidence 355666664
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.15 E-value=0.00021 Score=78.05 Aligned_cols=241 Identities=10% Similarity=0.030 Sum_probs=125.8
Q ss_pred eeEeEECC-CCCEEEEeeCCC-----------cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecc
Q 006808 8 DILTSFSP-ALDYFAICSGDA-----------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 8 ~~~~~fs~-dg~~las~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
..++++.| +|++++.|+.++ .+.+||..+++........ . .+ ...+...++..
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----------~---~~-~~~~~~~~~~~ 252 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----------T---KH-DMFCPGISMDG 252 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----------C---SC-CCSSCEEEECT
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-----------C---CC-CCccccccCCC
Confidence 34667888 888888887543 5788888876532210000 0 00 00011112111
Q ss_pred cccccccccCCcEEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CC-----CcEEEEeCCC
Q 006808 76 VDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-----GMVCEIDPLT 148 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~d-----g~v~iwd~~~ 148 (630)
++.++++|+. +..+.+||+.++.....-.......-.++++.++|+.++.|+ .+ ..+.+||..+
T Consensus 253 ---------~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 253 ---------NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp ---------TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ---------CCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 1667777774 457999999988654221111111223455667899888888 34 4699999887
Q ss_pred CceeEEeec------CCCCeEEEEEccCCCEEEEeC-----------CeEEEEECCCCceeeEeecCC---------CCe
Q 006808 149 GSLLGKFRA------STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHP---------GAV 202 (630)
Q Consensus 149 ~~~~~~~~~------~~~~v~~l~~~p~~~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~---------~~v 202 (630)
.+-.. +.. .... ....+..++..++.++ ..+..||..+.........+. ..-
T Consensus 324 ~~W~~-~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 324 KTWTS-LPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TEEEE-ETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred Cccee-CCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 65322 110 0000 0011223344444432 467889988765433322121 123
Q ss_pred EEEEEee-CCcEEEEEeeCCC-----------eEEEEEcCCCccccceeee--eecCCceeeeeEEecCCccCCCCCEEE
Q 006808 203 RFMTFSD-NGKYVLSSAVGER-----------YIALWRTDGVKKQSASCVL--AMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 203 ~~l~~sp-~~~~l~~~~~~d~-----------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
.++.|.. +++.++.+|. ++ .|.+||..+..-. ... .+.... ....+... |+++.++
T Consensus 402 ~av~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~mp~~R-~~~~~~~l-----~~g~i~v 471 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNT---VFASNGLYFAR-TFHTSVVL-----PDGSTFI 471 (656)
T ss_dssp EEEEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEE---EECTTCCSSCC-BSCEEEEC-----TTSCEEE
T ss_pred ceEeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCee---EEccCCCCCCc-ccCCeEEC-----CCCCEEE
Confidence 4455544 5666666663 22 5777777665421 111 122221 12222222 7889999
Q ss_pred EEecC-----------CcEEEEEcCCc
Q 006808 269 AISET-----------GVCYIWYGQNI 284 (630)
Q Consensus 269 s~s~d-----------g~i~iwd~~~~ 284 (630)
.|+.+ ..+.+||..+.
T Consensus 472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 472 TGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp ECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred ECCcccCcCcCCCCcccceEEEcCCCC
Confidence 88764 45788887654
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.12 E-value=0.0017 Score=60.71 Aligned_cols=189 Identities=7% Similarity=0.063 Sum_probs=112.8
Q ss_pred eEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++|+|++..| ++...++.|...|.. ++.+..+.-. +. .+.-.+++... +.++
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------------g~--~D~EGIa~~~~---------g~~~ 84 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------------FV--KDLETIEYIGD---------NQFV 84 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------SC--SSEEEEEECST---------TEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------CC--CChHHeEEeCC---------CEEE
Confidence 4999987655 456668889999987 8887776411 11 22334444432 4444
Q ss_pred EEEeCCCeEEEEEccCCee---eEEc--c---CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC---CCceeEEee--
Q 006808 90 VLGTGGGDVLALAVSAGQL---KWRL--S---DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFR-- 156 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~---~~~~--~---~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~---~~~~~~~~~-- 156 (630)
++.-.++.+.++++..... +... . ........+++|+|.++.|+++.......+|.+. ....+..+.
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence 4444567788888765432 1111 1 1234567999999999888877765544444443 111222221
Q ss_pred -----cCCCCeEEEEEccCCCEE-EEeC--CeEEEEECCCCceeeEeecCC---------CCeEEEEEeeCCcEEEEEee
Q 006808 157 -----ASTKGISCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 157 -----~~~~~v~~l~~~p~~~~l-~~~~--g~i~lwd~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~l~~~~~ 219 (630)
.+...+.+++++|....+ +... +.+.++|.. |+.+..+.-.. ...-.|+|.++|+.++ ++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vs- 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VS- 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EE-
T ss_pred hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-Ec-
Confidence 123467899999965444 4444 788999965 55555443221 2568899999998544 45
Q ss_pred CCCeEEEEEc
Q 006808 220 GERYIALWRT 229 (630)
Q Consensus 220 ~d~~i~vwd~ 229 (630)
+.+.++++.-
T Consensus 242 E~n~~y~f~~ 251 (255)
T 3qqz_A 242 EPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEEEe
Confidence 5666666543
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.06 E-value=0.0032 Score=63.58 Aligned_cols=195 Identities=10% Similarity=-0.078 Sum_probs=111.6
Q ss_pred EeEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|++.+..|... ...+.|..++...+.....+......+ ..+++.+.. +.+
T Consensus 120 gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p------------------~glavd~~~--------g~l 173 (386)
T 3v65_B 120 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP------------------GGLAVDWVH--------DKL 173 (386)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC------------------CCEEEETTT--------TEE
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc------------------cEEEEEeCC--------CeE
Confidence 45888755544443 456778888876554332222111111 112222211 344
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CC-CcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
.++-...+.|.++++...... .+....-....++++.|.+..|+.+. .. +.|..+++............-.....|+
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla 252 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT 252 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence 444455677888887654432 22223335689999999777665554 34 6788888764333222333334578999
Q ss_pred EccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|+|++..|..+. +.|..+++........+.........+++ ..+ .++.+....+.|..++..+++
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FED-SLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEETTTCC
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECC-EEEEeeCCCCeEEEEECCCCc
Confidence 998777776665 78999998644332223333445677887 334 444445467788888865554
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.05 E-value=0.00093 Score=71.40 Aligned_cols=137 Identities=18% Similarity=0.311 Sum_probs=89.4
Q ss_pred CeEEEEEccCCeeeEEccCC-CC--------CCEEEEEEe-cCCC---EEEEEeCCCcEEEEeCCCCceeEEeecCCC--
Q 006808 96 GDVLALAVSAGQLKWRLSDC-HP--------GGVSAISFA-THGS---CIYSAGADGMVCEIDPLTGSLLGKFRASTK-- 160 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~-h~--------~~v~~~~~s-~~g~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-- 160 (630)
+.|..+|..+|+.++.+... |. .++. +... .+|+ .++.++.+|.++++|..+|+.+..+.....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 57999999999998887543 31 1222 2222 4674 688899999999999999998776543210
Q ss_pred -----------Ce--------------------------------EEEEEccCCCEEEEe--------------------
Q 006808 161 -----------GI--------------------------------SCMAVSSDGKMLATA-------------------- 177 (630)
Q Consensus 161 -----------~v--------------------------------~~l~~~p~~~~l~~~-------------------- 177 (630)
++ ..++++|+..++++.
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 134566654444331
Q ss_pred ---------------CCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 178 ---------------AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 178 ---------------~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.|.|+.||+.+++.+-+...+. ++..-.....+..+++++ .|+.++.||.++++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~-~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGT-GDGYFKAFDAKSGKEL 520 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEEC-CCCcEEEEECCCCCEE
Confidence 1678999999999877665332 222212223455666666 6999999999999855
No 270
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.05 E-value=0.0043 Score=69.36 Aligned_cols=239 Identities=12% Similarity=0.071 Sum_probs=141.6
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.| .++...++|.+ -.|+.++-|..|+..++....-......... +-....+.++...+.
T Consensus 358 ~V--~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~v~~i~~d~~-------- 416 (795)
T 4a2l_A 358 VV--SCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESAR----------GIGSNNIKAVYVDEK-------- 416 (795)
T ss_dssp SE--EEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEEETT--------
T ss_pred ee--EEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCccc----------CCCCccEEEEEEcCC--------
Confidence 46 44477788764 4466677799999887765432211000000 000112334433221
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccC----CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec---
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--- 157 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~----~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~--- 157 (630)
+.+|.+|+.++-|.+||..+++.. .+.. .+...|.++...++|.. +.|+.+ -+.+||..+++.......
T Consensus 417 -g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~~-Gl~~~~~~~~~~~~~~~~~~~ 492 (795)
T 4a2l_A 417 -KSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNL-WLGTLS-ALVRFNPEQRSFTTIEKEKDG 492 (795)
T ss_dssp -TTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCE-EEEESS-CEEEEETTTTEEEECCBCTTC
T ss_pred -CCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCE-EEEecC-ceeEEeCCCCeEEEccccccc
Confidence 444788888788999999887654 2221 13457999998888874 444454 488999877654332211
Q ss_pred ---CCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEee-------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 158 ---STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 158 ---~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
....|.++...++|.+.+.+.+-+..||..+++. .+. .+...|.++...++|...+++. . -|..|
T Consensus 493 ~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~-Gl~~~ 567 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--E-GFYCF 567 (795)
T ss_dssp CBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--S-CEEEE
T ss_pred cccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--C-CceeE
Confidence 2357899999999987776666788899877654 332 1234688999888888665442 3 58889
Q ss_pred EcCCCccccceeeeee--cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 228 RTDGVKKQSASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+..+.+.. .+.. +.+...+..+... ++|.+.+++ . +-|..|+..++
T Consensus 568 d~~~~~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lWi~t-~-~Gl~~~~~~~~ 615 (795)
T 4a2l_A 568 NEKDKQIK----RYNTTNGLPNNVVYGILED-----SFGRLWLST-N-RGISCFNPETE 615 (795)
T ss_dssp ETTTTEEE----EECGGGTCSCSCEEEEEEC-----TTSCEEEEE-T-TEEEEEETTTT
T ss_pred CCCCCcEE----EeCCCCCCchhheEEEEEC-----CCCCEEEEc-C-CceEEEcCCCC
Confidence 98765422 1111 1122334444443 566655544 3 45677887654
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.04 E-value=0.0042 Score=61.71 Aligned_cols=144 Identities=10% Similarity=-0.057 Sum_probs=88.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CC-CcEEEEeCCCCceeEEe-ecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~d-g~v~iwd~~~~~~~~~~-~~~~~~v 162 (630)
+.+.++-...+.|.+.++...... .+....-....++++.|.+..++.+. .. +.|..+++... ....+ ...-...
T Consensus 128 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~P 205 (349)
T 3v64_C 128 DKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWP 205 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCE
T ss_pred CeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCc
Confidence 344445555677999988755432 22223335679999999666655543 44 77888887643 33333 2233457
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..++|+|++..|..+. +.|..+++........+.........+++. .+ .++.+....+.|..++..+++
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence 8999999777776665 789999986433222233334456777773 34 445555457788888755554
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.03 E-value=0.0029 Score=61.63 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=107.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-C-cEEEEeCCCCceeEEeec-CCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G-MVCEIDPLTGSLLGKFRA-STKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g-~v~iwd~~~~~~~~~~~~-~~~~v 162 (630)
+.++++-..++.|..||....... .+. ....+.++++.++|+++++.... + .|..+|..+++....... .....
T Consensus 43 g~lyv~d~~~~~I~~~d~~g~~~~-~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 119 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDGNQQI-HAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL 119 (306)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEE-EEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred CCEEEEeCCCCeEEEECCCCceEE-EEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcccc
Confidence 555555557889999998764332 221 23468999999999865554332 2 477778777775433322 12234
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCce-eeEee---------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFS---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~-~~~~~---------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
..++..+++..+++.. +.|+.+|..+++. +.... +.-.....+ +|++++|+++....+.|..|++.
T Consensus 120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence 5566666665555543 8999999876531 11110 111234555 88998888877677899999987
Q ss_pred C-CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 231 G-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
. +........... .....+++. ++|.+.++....+.|.+|+.
T Consensus 198 ~~g~~~~~~~~~~~----~~P~gi~vd-----~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 198 STDKPGEPEIFVEQ----TNIDDFAFD-----VEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp TTSCBCCCEEEEES----CCCSSEEEB-----TTCCEEEECBTTCCEEEECT
T ss_pred CCCCCCccEEEecc----CCCCCeEEC-----CCCCEEEEeCCCCeEEEECC
Confidence 5 321100111111 112334444 77877666666778888875
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.99 E-value=0.0033 Score=58.81 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=122.5
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
....++|.+.. +.++++...++.|...|+. ++...++..+-....-++++.+++.++++.-.++.+.++++
T Consensus 28 ~lSGla~~~~~--------~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 28 NISSLTWSAQS--------NTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CEEEEEEETTT--------TEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CcceeEEeCCC--------CEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 46667777653 5566667788889999998 77766664333356889999988876666656788999887
Q ss_pred CCCce---eEEee------cCCCCeEEEEEccCCCEEEEeC--C--eEEEEEC-CCCceeeEee-------cCCCCeEEE
Q 006808 147 LTGSL---LGKFR------ASTKGISCMAVSSDGKMLATAA--G--QLKTFNC-SDHKKMQKFS-------GHPGAVRFM 205 (630)
Q Consensus 147 ~~~~~---~~~~~------~~~~~v~~l~~~p~~~~l~~~~--g--~i~lwd~-~~~~~~~~~~-------~h~~~v~~l 205 (630)
..... +.... ........++|+|.+..|.++. . .|+.|+- .....+..+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65432 22222 1233668999999987777765 3 5555551 1111122221 123457899
Q ss_pred EEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC-------CceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 206 ~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
+|+|....+++.+...+.|.++|.... .. ..+.+.. .-....-+++. ++|+.. ..++-+.++.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~---~~~~L~~g~~~l~~~~~qpEGia~d-----~~G~ly-IvsE~n~~y~ 248 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VI---GEMSLTKGSRGLSHNIKQAEGVAMD-----ASGNIY-IVSEPNRFYR 248 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EE---EEEECSTTGGGCSSCCCSEEEEEEC-----TTCCEE-EEETTTEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EE---EEEEcCCccCCcccccCCCCeeEEC-----CCCCEE-EEcCCceEEE
Confidence 999987777777767888999997654 22 1222221 11233445565 888744 4477677776
Q ss_pred EEc
Q 006808 279 WYG 281 (630)
Q Consensus 279 wd~ 281 (630)
|.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.90 E-value=0.011 Score=57.82 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=107.5
Q ss_pred eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCcEEEEeCCC---CceeEE-eecCCCCeEEEEE
Q 006808 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLT---GSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~~~---~~~~~~-~~~~~~~v~~l~~ 167 (630)
+....|+..|+.+......+ .....+.+++|++.++.|+.+ ...+.|..+++.. +..... +...-.....+++
T Consensus 7 ~~~~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 84 (316)
T 1ijq_A 7 TNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 84 (316)
T ss_dssp ECBSSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred ECCCeEEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence 34456899999887654333 234568999999876655544 4568999999875 122222 3222245678999
Q ss_pred ccCCCEEEEe-C--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC-CeEEEEEcCCCccccceeeeee
Q 006808 168 SSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 168 ~p~~~~l~~~-~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d-~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.+.+..|+.+ . +.|.++++........+.........+++.|.+.+|+.+.... +.|..+++...... .+.
T Consensus 85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~----~~~- 159 (316)
T 1ijq_A 85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----SLV- 159 (316)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE----EEE-
T ss_pred eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE----EEE-
Confidence 8755555444 3 7999999865433222333345678999999777666665333 67888887654321 111
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcC
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQ 282 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~ 282 (630)
...-.....+++. +++..|..+. ..+.|..+|..
T Consensus 160 ~~~~~~P~gla~d-----~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 160 TENIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CSSCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCceEEEEe-----ccCCEEEEEECCCCeEEEEecC
Confidence 1122233445555 6666665554 46789999875
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0016 Score=66.74 Aligned_cols=148 Identities=12% Similarity=0.118 Sum_probs=85.6
Q ss_pred EeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|+| ++..|..+...+.|+.+|..++....... .. .....++|.+. ++.
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~------------------~~P~~ia~d~~---------G~~ 192 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL------------------SKVRTICWTHE---------ADS 192 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CC------------------SCEEEEEECTT---------SSE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CC------------------CCcceEEEeCC---------CCE
Confidence 458998 45555555544789999987766443222 11 12234455443 554
Q ss_pred EEEEeC-CC----eEEEEEccCCee-eEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecC-CC
Q 006808 89 LVLGTG-GG----DVLALAVSAGQL-KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-TK 160 (630)
Q Consensus 89 l~~~~~-~g----~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~ 160 (630)
|+++.. ++ .+.+++...... ...+. ......+++++| +|..+++-..++.|..++...+.....+... ..
T Consensus 193 lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 555554 22 244444332211 01111 123456788999 6666666667789999998876543333221 23
Q ss_pred CeEEEEEccCCCEEEEeC---CeEEEEECC
Q 006808 161 GISCMAVSSDGKMLATAA---GQLKTFNCS 187 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---g~i~lwd~~ 187 (630)
....++|+|+|++|+.+. +.|+.++..
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 467899999999666654 789888765
No 276
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.89 E-value=0.0023 Score=62.24 Aligned_cols=189 Identities=14% Similarity=0.241 Sum_probs=116.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC--
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-- 94 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-- 94 (630)
..+++.....+-+.|||+ +|+.++.+.. +..+.+...+.+ ++ ..+. -.++++...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~---~l------------~g~~-----~dla~as~R~~ 96 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDF---PL------------NGKK-----VDIAAASNRSE 96 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEE---EE------------TTEE-----EEEEEEEECST
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEeccc---cc------------CCce-----EeEEEEeCCCC
Confidence 345555556788999999 7998887753 222222222210 00 0000 112233333
Q ss_pred -CCeEEEEEc--cCCeeeEEccC-----CCC-CCEEEEEE--ecC-CC-EEEEEeCCCcEEEEeCC-------CCceeEE
Q 006808 95 -GGDVLALAV--SAGQLKWRLSD-----CHP-GGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL-------TGSLLGK 154 (630)
Q Consensus 95 -~g~v~iwd~--~~~~~~~~~~~-----~h~-~~v~~~~~--s~~-g~-~l~s~~~dg~v~iwd~~-------~~~~~~~ 154 (630)
+++|.+|++ .++. +..+.. +.. ..+..+++ +|. +. ++++...+|.+..|++. +++.+++
T Consensus 97 ~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~ 175 (355)
T 3amr_A 97 GKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA 175 (355)
T ss_dssp TCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence 467999966 4443 323311 011 45677888 664 44 57888889999999883 3466777
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECC-----CCceeeEee-cC-CCCeEEEEEe--eCCc-EEEEEeeCCC
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-----DHKKMQKFS-GH-PGAVRFMTFS--DNGK-YVLSSAVGER 222 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~-----~~~~~~~~~-~h-~~~v~~l~~s--p~~~-~l~~~~~~d~ 222 (630)
|.. ...+..+.+.+....|+.+- .-|..|+.. +++.+..+. ++ ...+..|++. ++++ ||++++..+.
T Consensus 176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 775 45788899999888888887 346666754 344554442 22 2468888885 4555 7888876788
Q ss_pred eEEEEEcC
Q 006808 223 YIALWRTD 230 (630)
Q Consensus 223 ~i~vwd~~ 230 (630)
.+.+||..
T Consensus 255 s~~Vydr~ 262 (355)
T 3amr_A 255 SYAIYDRQ 262 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 99999986
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.87 E-value=0.015 Score=64.05 Aligned_cols=192 Identities=8% Similarity=-0.065 Sum_probs=112.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+.++++-...+.|+.+++.... ....+.........+|++.+.++.|+. -...+.|.+.++........+......
T Consensus 436 ~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~ 515 (791)
T 3m0c_C 436 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 515 (791)
T ss_dssp TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC
Confidence 3344444455778888886531 111222223356778999987765554 456789999998754433333334456
Q ss_pred eEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
...|++.|.+..|+.+. +.|...++........+...-.....|++.+.+..|+.+....+.|..+++......
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-- 593 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-- 593 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE--
Confidence 78999999755555554 578888886443333333333578899999888778777656778999998765432
Q ss_pred eeeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 238 SCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 238 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.+... ......+.+..+ .+..+++-...+.|...+..+|+.+
T Consensus 594 -~v~~~~~~l~~P~glav~-------~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 594 -TILEDEKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp -EEEECTTTTSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred -EEecCCCccCCCCEEEEe-------CCEEEEEECCCCEEEEEeCCCCcce
Confidence 12211 111222333333 2333344445677888887666543
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.82 E-value=0.0012 Score=73.08 Aligned_cols=152 Identities=9% Similarity=0.019 Sum_probs=91.6
Q ss_pred ceeeEEec-ccccccccccCCcEEEEEe-CCC----eEEEEEccCC-eeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-
Q 006808 67 DYTCMKWL-SVDRKKKRKLGSSLLVLGT-GGG----DVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD- 138 (630)
Q Consensus 67 ~~~~~~w~-~~~~~~~~~~~~~~l~~~~-~~g----~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d- 138 (630)
......|. |. +++|+.+. .+| .|+++|+.++ +.+.... .....+++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PD---------G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPE---------HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTT---------TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCC---------CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECC
Confidence 44556676 44 55555443 334 3999999998 6321111 1113468899999887776654
Q ss_pred ----CcEEEEeCCCCce--eEEeec-CCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCc-ee--eEe-ecCCCCe
Q 006808 139 ----GMVCEIDPLTGSL--LGKFRA-STKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHK-KM--QKF-SGHPGAV 202 (630)
Q Consensus 139 ----g~v~iwd~~~~~~--~~~~~~-~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~-~~--~~~-~~h~~~v 202 (630)
..|+.+++.+++. ...+.. .......+.|+|||++|+... ..|+++|+.++. .. ..+ .......
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 3688889887653 233332 223467889999999888754 478999998752 22 333 3334455
Q ss_pred EEEEEeeCCcEEEEEeeCC----CeEEEEEcCC
Q 006808 203 RFMTFSDNGKYVLSSAVGE----RYIALWRTDG 231 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d----~~i~vwd~~~ 231 (630)
.++.|+. |..|+..+..+ ..|..+++.+
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 5555544 55555544333 2577777654
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.82 E-value=0.019 Score=58.07 Aligned_cols=145 Identities=7% Similarity=-0.080 Sum_probs=89.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.+.++-...+.|.+.++........+ ...-....++++.|.+..|+.+. ..+.|...++........+...-....
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~ 249 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 249 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred CceEEEECCCCeEEEEeCCCCceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceE
Confidence 444445556678888888765443222 22334589999999766666554 246888888864433333333335678
Q ss_pred EEEEccCCCEEEEeC---CeEEEEECCCCceeeEeec--CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.|+++|++..|..+. +.|..+|+........... .-....++++. +..++.+....+.|..++..+++
T Consensus 250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCC
T ss_pred EEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCC
Confidence 999999877777765 6899999864432222222 22345566663 34455544456778888866665
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.79 E-value=0.011 Score=57.63 Aligned_cols=144 Identities=10% Similarity=-0.058 Sum_probs=90.0
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEe-ecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKF-RASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~-~~~~~~v 162 (630)
+.+.++-...+.|.++++...... .+.........++++.|.+..|+.+. ..+.|...++.. .....+ ...-...
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~P 168 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWP 168 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCE
T ss_pred CeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCc
Confidence 344444455678999998754332 22223345689999999766666555 357888888753 333333 2223456
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
..++|+|++..|..+. +.|..+|+.... ...+ .+.......+++.. ..++.+....+.|..++..+++.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCS
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCc
Confidence 8999999777777665 799999986433 3333 32344566777753 34444454677888888876653
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.79 E-value=0.0048 Score=63.26 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=104.2
Q ss_pred EeEECCC--CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.++|+|+ +..|..+...+.|+.++..++....... ... ....++|.+. +.
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~------------------~P~giavd~d---------G~ 194 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIG------------------QCADVNFTLN---------GD 194 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCS------------------CEEEEEECTT---------CC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCC------------------CccEEEECCC---------CC
Confidence 4599985 3344444333899999988777654332 111 2234444433 45
Q ss_pred EEEEEeCCC----e-EEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEe-ecC-C
Q 006808 88 LLVLGTGGG----D-VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RAS-T 159 (630)
Q Consensus 88 ~l~~~~~~g----~-v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~-~ 159 (630)
|+++...+ . +..++...+....... ..-....+++++| +|.++++-..++.|+.+|..++.....+ ... .
T Consensus 195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp -EEEEECCSCTTSEEEEEECGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred -EEEEcCCCCcccceEEEEECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44444322 1 3333332221100011 1123456788999 6665555556788999998877663332 221 1
Q ss_pred CCeEEEEEccCCCEEEEeC---CeEEEEECC--CCce--eeEeecC---------------CCCeEEEEE---------e
Q 006808 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSGH---------------PGAVRFMTF---------S 208 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g~i~lwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------s 208 (630)
..-..++|+|+++.|..+. +.|+.++.. ++.. ...+.+. -.....+++ .
T Consensus 273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd 352 (433)
T 4hw6_A 273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE 352 (433)
T ss_dssp SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence 2335799999999666654 689998865 2321 1222221 123567888 5
Q ss_pred eCCcEEEEEeeCCCeEEEEEc
Q 006808 209 DNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~ 229 (630)
++|..+ ++....+.|+.++.
T Consensus 353 ~~g~ly-vaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 353 DEYDFY-FCDRDSHTVRVLTP 372 (433)
T ss_dssp CCEEEE-EEETTTTEEEEECT
T ss_pred CCCcEE-EEECCCCEEEEECC
Confidence 556544 44445778888875
No 282
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.76 E-value=0.00011 Score=80.52 Aligned_cols=191 Identities=7% Similarity=-0.043 Sum_probs=107.1
Q ss_pred EEEEE-eCCCeEEEEEccC----CeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 88 LLVLG-TGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 88 ~l~~~-~~~g~v~iwd~~~----~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
.|+.+ ...+.|+.+++.+ .... .+.........++++.+.+.. +++-...+.|.++++........+......
T Consensus 419 ~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~ 497 (699)
T 1n7d_A 419 RIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK 497 (699)
T ss_dssp EEEECCTTTTSBEEEESCCCCC-CCCC-CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC
T ss_pred eEEEEecCCCeEEEEecCCCCCCcceE-EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC
Confidence 34444 3456788888875 2221 222111234567888764444 444456788999998755433333322345
Q ss_pred eEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
...++++|.+.+|+.+. +.|..+++... ....+ ...-.....|+|+|++..|+.+....+.|.++++......
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~- 575 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK- 575 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-
Confidence 67889999766555544 57777776432 22222 2223446789999987777776666788999998754322
Q ss_pred ceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 237 ASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.+.... .......+..+ . +..+++....+.|..++..+++.+...
T Consensus 576 --~~~~~~~~~~~P~glavd------~-~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 576 --TILEDEKRLAHPFSLAVF------E-DKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp --EECCCSSSCSSCCCCEEE------T-TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred --EEEecCCcCCCceEeEEE------C-CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 111111 11111222222 2 244444455778999998777665443
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.019 Score=55.80 Aligned_cols=197 Identities=13% Similarity=0.191 Sum_probs=114.8
Q ss_pred eeEEecc-cccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC----CCE--E-EEEe-C--
Q 006808 69 TCMKWLS-VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH----GSC--I-YSAG-A-- 137 (630)
Q Consensus 69 ~~~~w~~-~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~----g~~--l-~s~~-~-- 137 (630)
....|.. .++. .++++.....+-+.+||+ .|+.+..+.. +.++.+..-|+ |+. + ++.. .
T Consensus 28 dpavw~~~~dp~------~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~ 97 (355)
T 3amr_A 28 DPAIWLDPKTPQ------NSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEG 97 (355)
T ss_dssp EEEEECCSSCGG------GCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTT
T ss_pred CccEecCCCCCC------ccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCC
Confidence 3466874 3443 455666666778999999 7777766532 56777777663 222 2 3333 3
Q ss_pred CCcEEEEeC--CCCceeEEeec------CC-CCeEEEEE--ccC-CC-EEEEeC--CeEEEEEC---C----CCceeeEe
Q 006808 138 DGMVCEIDP--LTGSLLGKFRA------ST-KGISCMAV--SSD-GK-MLATAA--GQLKTFNC---S----DHKKMQKF 195 (630)
Q Consensus 138 dg~v~iwd~--~~~~~~~~~~~------~~-~~v~~l~~--~p~-~~-~l~~~~--g~i~lwd~---~----~~~~~~~~ 195 (630)
+++|.+|++ .++. +..+.. .. ..++.+|+ +|. +. ++++.. |.+..|.+ . +.+.+++|
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999976 3333 444421 11 45677887 774 54 444444 78888877 2 33567777
Q ss_pred ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC---ceeeeeEEecCCccCCCCC-EEEEEe
Q 006808 196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGL-YVLAIS 271 (630)
Q Consensus 196 ~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~l~s~s 271 (630)
.. .+.+..+...+...+|+++- ++.-|..++...........+...... ...-.+..+. .+++. +|++.+
T Consensus 177 ~l-gsq~EgcvvDd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~----~~~g~gyLivSs 250 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY----AADGKGYLMASS 250 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE----CGGGCEEEEEEE
T ss_pred cC-CCCcceEEEcCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe----cCCCCEEEEEEc
Confidence 64 45788899998888888876 676666666443221101122222111 1222222221 14444 677777
Q ss_pred c-CCcEEEEEcC
Q 006808 272 E-TGVCYIWYGQ 282 (630)
Q Consensus 272 ~-dg~i~iwd~~ 282 (630)
. ++.+.+||..
T Consensus 251 QG~~s~~Vydr~ 262 (355)
T 3amr_A 251 QGNSSYAIYDRQ 262 (355)
T ss_dssp GGGTEEEEEESS
T ss_pred CCCCEEEEEECC
Confidence 4 7799999985
No 284
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.0083 Score=66.87 Aligned_cols=242 Identities=9% Similarity=0.047 Sum_probs=139.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++...++|. |-.|+.++-|..|+..++.... +........ +. +-....+.++.-.. ...
T Consensus 316 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~-----~~---~l~~~~v~~i~~d~----------~g~ 375 (781)
T 3v9f_A 316 RYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMN-----ES---SLSNKVVSSVCDDG----------QGK 375 (781)
T ss_dssp EEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----CCC-----SS---CCSSSCEEEEEECT----------TSC
T ss_pred EEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCccccc-----cC---CCCCcceEEEEEcC----------CCC
Confidence 4447777775 4456656678888876654332 210000000 00 00112233443322 334
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEcc---CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee---cCCCCe
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR---ASTKGI 162 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~---~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~v 162 (630)
|.+|+.++-|..|+..++... .+. ......|.++...++|. |+.|+.++-+..+|..+++.. .+. .....|
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v 452 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDV 452 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCE
T ss_pred EEEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeE
Confidence 778887777999998765442 111 12335789998887775 556777677899998776543 232 134579
Q ss_pred EEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecC-----CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 163 SCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH-----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
.++...++|.+.+...+-+..||..+++........ ...|.++...++|...+.+ .++-|..|+..+.+..
T Consensus 453 ~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~~~Gl~~~~~~~~~~~-- 528 (781)
T 3v9f_A 453 RVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT--FGGGVGIYTPDMQLVR-- 528 (781)
T ss_dssp EEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE--SSSCEEEECTTCCEEE--
T ss_pred EEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE--cCCCEEEEeCCCCeEE--
Confidence 999999888776666677899998876543322212 3578999988888766544 2344778887665422
Q ss_pred eeeeee--cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 238 SCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 238 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+.. ..+...+.++... ++|...+ ++..|.+..||..+++
T Consensus 529 --~~~~~~~l~~~~i~~i~~d-----~~g~lWi-~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 529 --KFNQYEGFCSNTINQIYRS-----SKGQMWL-ATGEGLVCFPSARNFD 570 (781)
T ss_dssp --EECTTTTCSCSCEEEEEEC-----TTSCEEE-EETTEEEEESCTTTCC
T ss_pred --EccCCCCCCCCeeEEEEEC-----CCCCEEE-EECCCceEEECCCCCc
Confidence 1111 1122334444443 5666544 4456665888876553
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.68 E-value=0.02 Score=63.09 Aligned_cols=144 Identities=7% Similarity=-0.085 Sum_probs=89.8
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
.+.++-...+.|.+.++...... .+....-....+|++.|.+.+|+.+.. .+.|...++........+...-.....
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred cEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence 44455556678999998755433 332233456899999997666665542 367888888644433333333356789
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|++++.+..|+.+. +.|..+++........+... -....+|++. +.+|+.+....+.|...+..+++
T Consensus 563 LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence 99998777777665 68999998654333333321 2234456653 44666665556777777766654
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.67 E-value=0.0014 Score=71.53 Aligned_cols=224 Identities=6% Similarity=-0.067 Sum_probs=120.4
Q ss_pred eEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++.++|+++++|+. ++.+.+||..+++.... .. .+...........+. +.++
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~----------------~~~~R~~~s~~~~~d---------g~iy 301 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PD----------------MQVARGYQSSATMSD---------GRVF 301 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CC----------------CSSCCSSCEEEECTT---------SCEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-CC----------------CCccccccceEEecC---------CeEE
Confidence 477889999999985 56899999887654321 10 000111111122211 6677
Q ss_pred EEEe-CC-----CeEEEEEccCCeeeEE-------ccCCCCCCEEEEEEecCCCEEEEEeCC---------CcEEEEeCC
Q 006808 90 VLGT-GG-----GDVLALAVSAGQLKWR-------LSDCHPGGVSAISFATHGSCIYSAGAD---------GMVCEIDPL 147 (630)
Q Consensus 90 ~~~~-~~-----g~v~iwd~~~~~~~~~-------~~~~h~~~v~~~~~s~~g~~l~s~~~d---------g~v~iwd~~ 147 (630)
++|+ .+ ..+.+||+.++..... +...... ..+..++..++.++.+ ..+..||..
T Consensus 302 v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 302 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred EEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc----ceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 7777 33 4599999988765422 1111000 1122344444455444 356788887
Q ss_pred CCceeEEeecCC---------CCeEEEEEcc-CCCEEEEeC--C-----------eEEEEECCCCceeeEe--ecCCCCe
Q 006808 148 TGSLLGKFRAST---------KGISCMAVSS-DGKMLATAA--G-----------QLKTFNCSDHKKMQKF--SGHPGAV 202 (630)
Q Consensus 148 ~~~~~~~~~~~~---------~~v~~l~~~p-~~~~l~~~~--g-----------~i~lwd~~~~~~~~~~--~~h~~~v 202 (630)
+..-........ ..-.++.|.. +++++++|+ + .|.+||..+..-.... ..+....
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~ 457 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc
Confidence 765433222111 1223444443 677777776 1 6788888776543322 1122222
Q ss_pred -EEEEEeeCCcEEEEEeeCC----------CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 203 -RFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 203 -~~l~~sp~~~~l~~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
.+++..|+++.++.+|... ..+.+||..+.+-. .............+..+. |+|+.++.|+
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---~~~~~~~~R~~hs~a~ll-----~dg~v~v~GG 529 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---KQNPNSIVRVYHSISLLL-----PDGRVFNGGG 529 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---ECCCCSSCCCTTEEEEEC-----TTSCEEEEEC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee---ecCCCCCccccccHhhcC-----CCcEEEecCC
Confidence 3445668999988887421 46899998775422 111122222222233333 7899888887
Q ss_pred c
Q 006808 272 E 272 (630)
Q Consensus 272 ~ 272 (630)
.
T Consensus 530 ~ 530 (656)
T 1k3i_A 530 G 530 (656)
T ss_dssp C
T ss_pred C
Confidence 5
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.63 E-value=0.0079 Score=61.64 Aligned_cols=141 Identities=11% Similarity=0.115 Sum_probs=87.4
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCce-eEEeecCCC
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSL-LGKFRASTK 160 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~v~iwd~~~~~~-~~~~~~~~~ 160 (630)
..|+++...+.|+.+++.++.... +. .......+++|+++|+ |+.+...+ .+...+...+.. ...+. ...
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~-~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~ 228 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDI-KT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NAR 228 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEE-EC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECS
T ss_pred CEEEEEeCCCCEEEEECCCCEEEE-ee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccC
Confidence 346666555889999998877653 32 2345689999999999 55544321 233333222111 11222 223
Q ss_pred CeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEe-e-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-S-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 161 ~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~-~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
....++++| +|.++++-. +.|+.++..++.....+ . +....-..++|+|++++|+.+....+.|+.++...
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 456789999 665554443 78999998877653333 2 11223357999999997777766678899988763
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.62 E-value=0.013 Score=56.60 Aligned_cols=152 Identities=10% Similarity=0.059 Sum_probs=101.5
Q ss_pred eeEEecccccccccccCCcEEEEEe-CCCeEEEEEccCCeeeEEccCC----CC--CCEEEEEE---ecCCCEEEEEe--
Q 006808 69 TCMKWLSVDRKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDC----HP--GGVSAISF---ATHGSCIYSAG-- 136 (630)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~----h~--~~v~~~~~---s~~g~~l~s~~-- 136 (630)
.+..|.... ..+++++ ..|.|..|++..+........+ .. ..+.++.| .|+++++++..
T Consensus 16 E~~~wd~~~---------g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 16 EDTIYDRTR---------QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp SCEEEETTT---------TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCccCcCCC---------CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 366776653 3455555 7899999999866543232222 11 13689999 58876666543
Q ss_pred -----------CCCcEEEEeCC---CCceeEEeec-------------CCCCeEEEEEccCCCEEEEeC---CeEEEEEC
Q 006808 137 -----------ADGMVCEIDPL---TGSLLGKFRA-------------STKGISCMAVSSDGKMLATAA---GQLKTFNC 186 (630)
Q Consensus 137 -----------~dg~v~iwd~~---~~~~~~~~~~-------------~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~ 186 (630)
.+..|..+|+. +++.+..... .......+++.++|+..++++ +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 25779999999 7877655431 112478999999999888776 45666665
Q ss_pred CCCceeeEee------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 187 SDHKKMQKFS------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 187 ~~~~~~~~~~------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
. |+.+..+. ......+.|+++|+|..|++..+ .+.|..+|+..
T Consensus 167 d-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 D-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp T-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred C-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 4 33333321 11123679999999999999885 89999999884
No 289
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=0.029 Score=62.42 Aligned_cols=236 Identities=15% Similarity=0.121 Sum_probs=136.6
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .++...++|.+ ..|+.++-|.+|+..++.... +.... +.....+.++...+
T Consensus 363 ~~v--~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~--------------~~~~~~v~~i~~d~-------- 416 (781)
T 3v9f_A 363 KVV--SSVCDDGQGKL-WIGTDGGGINVFENGKRVAIY-NKENR--------------ELLSNSVLCSLKDS-------- 416 (781)
T ss_dssp SCE--EEEEECTTSCE-EEEEBSSCEEEEETTEEEEEC-C-------------------CCCSBEEEEEECT--------
T ss_pred cce--EEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEE-ccCCC--------------CCCCcceEEEEECC--------
Confidence 345 34467777764 445555668888876543321 11000 00112233443322
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccC--CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC---
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--- 158 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--- 158 (630)
...|.+|+.++-|..|+..+++.. .+.. .....|.++...++|. |+.|+. +-+..||..+++........
T Consensus 417 --~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~ 491 (781)
T 3v9f_A 417 --EGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQ 491 (781)
T ss_dssp --TSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred --CCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccc
Confidence 334677887777999999887654 2221 1346799998887775 555656 45889998776544332222
Q ss_pred --CCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeec----CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 159 --TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 159 --~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
...|.++...++|.+.+... +-+..||..+++. ..+.. ....|.++...++|...++ + ..|.+..||..+
T Consensus 492 ~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T-~~Glv~~~d~~~ 568 (781)
T 3v9f_A 492 LLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA-T-GEGLVCFPSARN 568 (781)
T ss_dssp CSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE-E-TTEEEEESCTTT
T ss_pred cccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE-E-CCCceEEECCCC
Confidence 35789999999998877765 5688899876643 33321 1346889988888876554 3 355548888776
Q ss_pred Cccccceeeeee--cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 232 VKKQSASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 232 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.+.. .+.. +-+...+..+... ++|.+.+ ++..| |..|+..+.
T Consensus 569 ~~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lW~-~t~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 569 FDYQ----VFQRKEGLPNTHIRAISED-----KNGNIWA-STNTG-ISCYITSKK 612 (781)
T ss_dssp CCCE----EECGGGTCSCCCCCEEEEC-----SSSCEEE-ECSSC-EEEEETTTT
T ss_pred CcEE----EccccCCCCCceEEEEEEC-----CCCCEEE-EcCCc-eEEEECCCC
Confidence 5422 1111 1122233344443 5666444 44555 666776544
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.55 E-value=0.033 Score=53.67 Aligned_cols=201 Identities=14% Similarity=0.169 Sum_probs=117.9
Q ss_pred EeEECCCCCEEEEee-CCCcEEEEECCCCcEEEE-ecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+++|++....|..++ ..++|..|+...+..... +.+... .+........+.|...++. +.
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~------------~g~~~~~~sGl~~~~~D~~------gr 78 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASS------------NGDGEQQMSGLSLLTHDNS------KR 78 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCC------------SSCCSEEEEEEEESSSSSC------CE
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccc------------cCCCcceeeEEEEeccCCC------Cc
Confidence 458888666666666 689999999876644332 111000 0111223356777422221 44
Q ss_pred EEEEEe-------------CCCeEEEEEcc---CCeeeEEccC-----C-------CCCCEEEEEEecCCCEEEEEeCC-
Q 006808 88 LLVLGT-------------GGGDVLALAVS---AGQLKWRLSD-----C-------HPGGVSAISFATHGSCIYSAGAD- 138 (630)
Q Consensus 88 ~l~~~~-------------~~g~v~iwd~~---~~~~~~~~~~-----~-------h~~~v~~~~~s~~g~~l~s~~~d- 138 (630)
++++.. .+..|..||+. +++.+..... + -.....+++..++|+..++++.-
T Consensus 79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~ 158 (334)
T 2p9w_A 79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM 158 (334)
T ss_dssp EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence 555433 24669999999 7776543321 0 11358899999999999988888
Q ss_pred CcEEEEeCCCCceeEEeec------CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee-eEee--cC---CCCeEE
Q 006808 139 GMVCEIDPLTGSLLGKFRA------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFS--GH---PGAVRF 204 (630)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~------~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~-~~~~--~h---~~~v~~ 204 (630)
+.|..++.. |+.+..+.. .....+.|+++|+|..|++.. |.+..+|+.+.... .... +. -.....
T Consensus 159 ~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dg 237 (334)
T 2p9w_A 159 PAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEK 237 (334)
T ss_dssp CEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEE
T ss_pred CeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccc
Confidence 888777755 333333321 112467999999999888876 89999998743220 1111 21 112344
Q ss_pred E-EEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 205 M-TFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 205 l-~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
+ .--.+|+.++++....+.+.+.+.
T Consensus 238 ilp~~~~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 238 IVTVPVGNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEECS
T ss_pred ccccccCCEEEEEEcCCCCEEEEECC
Confidence 3 333577776665544555444443
No 291
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.54 E-value=0.017 Score=55.75 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=91.4
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCe---eeEEcc-CCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCce
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQ---LKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL 151 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~---~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~~ 151 (630)
+.+++.|+.+ ..+.+||+.++. ...... .........+.+ ++..++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 5556666654 358999998876 321111 111111222222 56666666643 3588899876642
Q ss_pred e--EEeecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeE--eecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 152 L--GKFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 152 ~--~~~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
. ..+........++. .++++++.|+ ..+.+||+.+.+-... ++........+ .-+++.++.+|..
T Consensus 141 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~ 216 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA--LLNDHIYVVGGFD 216 (301)
T ss_dssp EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBC
T ss_pred EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE--EECCEEEEEeCCC
Confidence 2 22221111222222 2677777765 4689999887653221 21111111222 2356666666632
Q ss_pred ----CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-----CcEEEEEcCCc
Q 006808 221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (630)
Q Consensus 221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 284 (630)
-..+.+||+.+.+-. .+..+........+.. -++..++.|+.+ ..+.+||..+.
T Consensus 217 ~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 217 GTAHLSSVEAYNIRTDSWT---TVTSMTTPRCYVGATV-------LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCcccceEEEEeCCCCcEE---ECCCCCCcccceeEEE-------ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 246889998876522 2222222221112222 245666666654 35677777654
No 292
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.53 E-value=0.063 Score=51.29 Aligned_cols=194 Identities=12% Similarity=0.105 Sum_probs=118.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEeecCC----C
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~----~ 160 (630)
...|+.-. ...+.++|+.+...+..+. ....|.--.|-... .|+-.+ +..|+-|++.. ..+.+.|.-|. .
T Consensus 78 ~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~ 152 (365)
T 2xzh_A 78 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 152 (365)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTC
T ss_pred ccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccc
Confidence 44555554 6779999999998887664 34578777786544 444443 45699999874 45666666553 3
Q ss_pred CeEEEEEccCCCEEEEeC---------CeEEEEECCCCceeeEeecCCCCeEEEEEe--eCCcEEEEEee---CCCeEEE
Q 006808 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAV---GERYIAL 226 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~l~~~~~---~d~~i~v 226 (630)
.|..-..+++.++++..+ |.+.+|..+.+ ..+.+.||...-..+.+. +....|++-+. ..+.+++
T Consensus 153 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhI 231 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 231 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 677778889999887764 68899998655 345567775433222221 11122222221 1258999
Q ss_pred EEcCCC---ccc-cceee---eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 227 WRTDGV---KKQ-SASCV---LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 227 wd~~~~---~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.++... ... ..+.. +.-+....+.-.+-.+ +.-..+...+.-|.|++||+.++..+...
T Consensus 232 iEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs-----~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 232 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEcCCCCCCCCCcccccceeeCCccccCCceEEEEec-----ccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 998543 110 00010 1111223333333333 45577888899999999999999887544
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.50 E-value=0.13 Score=55.11 Aligned_cols=227 Identities=6% Similarity=-0.022 Sum_probs=131.8
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeE
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v 98 (630)
+|+.+ ..+.|+..++.+......+.- . + -.....++|.+.. +.++++-..++.|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-~--------------~--~~~~~~l~~d~~~--------~~lywtD~~~~~I 61 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL-T--------------G--VKEASALDFDVTD--------NRIYWTDISLKTI 61 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC-C--------------S--CSCEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc-C--------------C--CCceEEEEEECCC--------CEEEEEECCCCeE
Confidence 44444 446788889876543322210 0 0 0123355665543 3444445566789
Q ss_pred EEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEe
Q 006808 99 LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177 (630)
Q Consensus 99 ~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~ 177 (630)
..+++........+ ........++++.+.++.|+ +-...+.|.+.++........+...-.....|++.|....|..+
T Consensus 62 ~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 62 SRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp EEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred EEEECCCCCcEEEE-eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence 88888765433222 22224577899987666554 44556789999986543322232334467899999954455544
Q ss_pred C----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeE
Q 006808 178 A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 178 ~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (630)
. +.|...++.... ...+...-.....|++++++..|+.+....+.|..+++...... ++. ........+.
T Consensus 141 D~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~----v~~-~~l~~P~gla 214 (628)
T 4a0p_A 141 EWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE----VIA-DDLPHPFGLT 214 (628)
T ss_dssp ECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEE-ECCSCEEEEE
T ss_pred CCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE----Eee-ccCCCceEEE
Confidence 3 578888875443 33333344567899999988888887767789999998765432 111 1122222333
Q ss_pred EecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+ . +...++-...+.|...|..+++
T Consensus 215 v~------~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 215 QY------Q-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EE------T-TEEEEEETTTTEEEEEETTTCC
T ss_pred EE------C-CEEEEecCCCCEEEEEECCCCC
Confidence 23 2 3334444446788888866654
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=0.006 Score=62.51 Aligned_cols=141 Identities=11% Similarity=0.135 Sum_probs=90.7
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-C----cEEEEeCCCCcee--EEeecCC
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G----MVCEIDPLTGSLL--GKFRAST 159 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g----~v~iwd~~~~~~~--~~~~~~~ 159 (630)
..|+++...+.|+.+|+.++...... ........++|+++|++|+.+... + .+..++ ..+... ..+.. .
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~ 225 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-G 225 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-C
T ss_pred CeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-C
Confidence 34666655577999999877654222 234568999999999976666542 1 233344 233221 23332 2
Q ss_pred CCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.....++++| +|.++++-. +.|+.|+...+.....+. +.......++|+|+|++|+.+....+.|..++...
T Consensus 226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 3457789999 666555543 799999988765422222 12235678999999997777765678899988754
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.42 E-value=0.053 Score=58.19 Aligned_cols=188 Identities=9% Similarity=-0.006 Sum_probs=107.6
Q ss_pred cEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 87 SLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 87 ~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
..|+.+. ..+.|..+++........+....-....++++.+.++.|+. -...+.|.+.++........+...-.....
T Consensus 52 ~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~ 131 (619)
T 3s94_A 52 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 131 (619)
T ss_dssp TEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCC
T ss_pred CEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCce
Confidence 3344444 45678888887653212222222356899999996665554 456789999998754332223233445688
Q ss_pred EEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 165 l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
|++.|.+..|..+. +.|...++.. .....+ ...-.....|++++++..|+.+-...+.|..+++....... .
T Consensus 132 Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~ 208 (619)
T 3s94_A 132 IALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--V 208 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----
T ss_pred EEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE--E
Confidence 99999755555544 4677777653 333333 23345678999999887777776667789999887654331 1
Q ss_pred ee-eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 240 VL-AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 240 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.. .+.++ ..+..+ .+ ...++-...+.|...|..+++..
T Consensus 209 ~~~~~~~P---~gi~~~------~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 209 VKGSLPHP---FALTLF------ED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp -------C---CCEEES------SS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred EeCCCCCc---eEEEEe------CC-EEEEecCCCCEEEEEECCCCccc
Confidence 11 12222 222222 22 33334345678888888777543
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=0.039 Score=56.83 Aligned_cols=151 Identities=11% Similarity=0.134 Sum_probs=84.5
Q ss_pred EeEECC-CCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEe-------ccccccc
Q 006808 10 LTSFSP-ALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-------LSVDRKK 80 (630)
Q Consensus 10 ~~~fs~-dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w-------~~~~~~~ 80 (630)
.++|+| ++..|. +....+.|++.|..++.....+..... .......++| .+.
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~---------------~~~~p~~ia~~~~~~~~d~~---- 203 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI---------------PTNRIRSIAFNKKIEGYADE---- 203 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS---------------SCSBEEEEEECCCBTTTBCT----
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc---------------ccCCCcEEEEeecccccCCC----
Confidence 458998 344444 444456789999887776544331110 0012334455 332
Q ss_pred ccccCCcEEEEEeCCC-------eEEEEEccC-Ceee-----EEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeC
Q 006808 81 KRKLGSSLLVLGTGGG-------DVLALAVSA-GQLK-----WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDP 146 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g-------~v~iwd~~~-~~~~-----~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~ 146 (630)
+..|+++...+ .|.+++... +... ..+. .. ....+++++|++.. +++-..++.|..+|+
T Consensus 204 -----G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 204 -----AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AY-KQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp -----TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EE-SCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred -----CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cC-CCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 55566666554 266665443 1221 1111 11 23457788995444 555567788999998
Q ss_pred C-------CCce-----------eEE-eec-CCCCeEEEEEccCCCEEEEeC---CeEEEEEC
Q 006808 147 L-------TGSL-----------LGK-FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNC 186 (630)
Q Consensus 147 ~-------~~~~-----------~~~-~~~-~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~ 186 (630)
. ++.. ... +.. .....+.++|+|+|++|..+. +.|+.++.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 7 5543 112 222 223458999999999666554 78888654
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.36 E-value=0.022 Score=56.12 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=75.8
Q ss_pred EEEEEeC---CCeEEEEEccCC--ee--eEEccCCCCCCEEEEEEecCCCEEEEEe-----------------CCCcEEE
Q 006808 88 LLVLGTG---GGDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAG-----------------ADGMVCE 143 (630)
Q Consensus 88 ~l~~~~~---~g~v~iwd~~~~--~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----------------~dg~v~i 143 (630)
.|+++.. +..|.+|++..+ .. +..+....-...+++.+.++|.+.++.. ..|.|..
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 3444433 345777776543 22 2223222224689999999998666653 1245555
Q ss_pred EeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCC-Cce--eeEeecCCCCeEEEEEee-CCcEEEE
Q 006808 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLS 216 (630)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp-~~~~l~~ 216 (630)
+|. ++.. .+...-...+.++|+||++.|+++. +.|+.|++.. +.. .+.+. ..+..-.+++.+ +|.+.++
T Consensus 208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEE
T ss_pred EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEE
Confidence 554 3322 2222233568999999999888776 7999999863 332 22332 345567788888 5876665
Q ss_pred Ee
Q 006808 217 SA 218 (630)
Q Consensus 217 ~~ 218 (630)
+.
T Consensus 284 ~~ 285 (355)
T 3sre_A 284 CH 285 (355)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.34 E-value=0.1 Score=51.95 Aligned_cols=194 Identities=11% Similarity=0.091 Sum_probs=119.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEeecCC----C
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~----~ 160 (630)
...|+.-. ...+.|||+.+...+..+. ....|.--.|-.+. .|+-.+ +..|+-|++.. ..+.+.|.-|. .
T Consensus 77 ~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~ 151 (494)
T 1bpo_A 77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (494)
T ss_dssp SSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred CcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccc
Confidence 44455554 6779999999998876664 33466666775443 555553 45799999864 35666676553 3
Q ss_pred CeEEEEEccCCCEEEEeC---------CeEEEEECCCCceeeEeecCCCCeEEEEEee--CCcEEEEEeeC---CCeEEE
Q 006808 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD--NGKYVLSSAVG---ERYIAL 226 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp--~~~~l~~~~~~---d~~i~v 226 (630)
.|..-..+++.++++..+ |.+.+|..+.+ ..+.+.||...-..+.+.. ....|++-+.. .+.++|
T Consensus 152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred eEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 677778899999988654 68899998655 3456677765443333221 11123332222 268999
Q ss_pred EEcCCCc---c-cccee---eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 227 WRTDGVK---K-QSASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 227 wd~~~~~---~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.++.... . ..... .+.-+....+.-.+-.+ +.-..+...+.-|.|++||+.++..+...
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-----~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-----ccCCEEEEEecCceEEEEecccceeeeee
Confidence 9985531 0 00000 11111223333333343 55677888899999999999999886544
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.28 E-value=0.0014 Score=71.66 Aligned_cols=143 Identities=8% Similarity=-0.081 Sum_probs=83.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceeEEe-ecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v 162 (630)
+.++++-...+.|.++++...... .+.........++++.|.+.+|+.+.. .+.|..+++.... ...+ ...-...
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~P 542 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP 542 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSC
T ss_pred CcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCc
Confidence 334444445677999988765443 332222245678899986666555442 2678887765332 2222 2222345
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeec---CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..|+|+|++..|+.+. +.|..+++.... ...+.. .......|++.. ..|+.+....+.|..++..+++
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCC
Confidence 7899999866666554 689999986432 233321 112334555544 3455555456788888877665
No 300
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.27 E-value=0.096 Score=50.54 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=91.8
Q ss_pred CcEEEEEeCC----CeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCCceeEE
Q 006808 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK 154 (630)
Q Consensus 86 ~~~l~~~~~~----g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~~~~~~ 154 (630)
+.+++.|+.+ ..+.+||+.++.....-. .........+.+ ++..++.|+.+ ..+.+||+.+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 5556666644 568999999876432111 111111222222 56667777655 4688999887642221
Q ss_pred --eecCCCCeEEEEEccCCCEEEEeC-----------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 155 --FRASTKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 155 --~~~~~~~v~~l~~~p~~~~l~~~~-----------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+....... +++. -++++++.|+ ..+.+||+.+.+-.. .++........+. -+++.++.+|.
T Consensus 134 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~ 209 (306)
T 3ii7_A 134 PSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF--VKDKIFAVGGQ 209 (306)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred CCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE--ECCEEEEEeCC
Confidence 21111121 2222 3666777765 237899988765322 1111111112222 25666666653
Q ss_pred CC----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-----CcEEEEEcCCc
Q 006808 220 GE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (630)
Q Consensus 220 ~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 284 (630)
.. ..+.+||+.+.+-. .+..+........+..+ ++..++.|+.+ ..+.+||..+.
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWK---MVSPMPWKGVTVKCAAV-------GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEE---ECCCCSCCBSCCEEEEE-------TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCceEEEeeCCCCcEE---ECCCCCCCccceeEEEE-------CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 22 35889998876522 22122222212222222 45677777654 35777777654
No 301
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.24 E-value=0.08 Score=51.01 Aligned_cols=183 Identities=11% Similarity=0.076 Sum_probs=91.4
Q ss_pred CcEEEEEeCCC-----eEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCceeEE
Q 006808 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGK 154 (630)
Q Consensus 86 ~~~l~~~~~~g-----~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~dg-----~v~iwd~~~~~~~~~ 154 (630)
+.+++.|+.++ .+.+||+.+++......... ......+.+ ++..++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 55666666443 48899998876432211111 111222222 566777777553 578888876642221
Q ss_pred --eecCCCCeEEEEEccCCCEEEEeC---------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 155 --FRASTKGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 155 --~~~~~~~v~~l~~~p~~~~l~~~~---------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
+....... +++. -++++++.|+ ..+.+||+.+.+-.. .++........+ .-+++.++.+|...
T Consensus 140 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~ 215 (302)
T 2xn4_A 140 APMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDG 215 (302)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSS
T ss_pred CCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCC
Confidence 22111122 2222 2566777665 258899988765322 222111111222 23566666666321
Q ss_pred ----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCCc
Q 006808 222 ----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (630)
Q Consensus 222 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~ 284 (630)
..+.+||+.+.+-. .+...........++. .++..++.|+.++ .+.+||..+.
T Consensus 216 ~~~~~~~~~yd~~~~~W~---~~~~~~~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWR---QVADMNMCRRNAGVCA-------VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCCCEe---eCCCCCCccccCeEEE-------ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 36889998876522 1212222211112222 2466667776543 4788887654
No 302
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.20 E-value=0.025 Score=56.21 Aligned_cols=146 Identities=12% Similarity=0.173 Sum_probs=92.9
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEEeecC----CCCeEEEEEccCCCEEEEeC-CeEEEEECCCCc-----------
Q 006808 127 THGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK----------- 190 (630)
Q Consensus 127 ~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~----------- 190 (630)
.+|..++.+ .++.||.-++......+.++.. -..+..+..+|+|++||..+ ..|.|..+..+.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 355555555 3467777777655445555543 22678899999999999988 899999887331
Q ss_pred -eeeEeec------CCCCeEEEEEeeCC---cEEEEEeeCCCeEEEEEcCCCccccc-----eeeeeecCCceeeeeEEe
Q 006808 191 -KMQKFSG------HPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQSA-----SCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 191 -~~~~~~~------h~~~v~~l~~sp~~---~~l~~~~~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 255 (630)
..+.+.- ...+|..+.|+|-+ ..|++-. .|+.|++||+......+. ...+........+..++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 1123321 24679999999954 5677776 599999999987432211 011111222244567777
Q ss_pred cCCccCCCCCEEEEEe--cCCcEEEE
Q 006808 256 DNGGVDDAGLYVLAIS--ETGVCYIW 279 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s--~dg~i~iw 279 (630)
. +++-.|...+ ..|-|+-.
T Consensus 188 g-----~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 S-----KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp C-----TTSSCEEEEECTTSCEEEEE
T ss_pred c-----CCCcEEEEEecCCCCCEEEE
Confidence 7 6676666655 77877654
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.19 E-value=0.2 Score=48.97 Aligned_cols=153 Identities=10% Similarity=0.156 Sum_probs=86.6
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCce
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK 191 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~ 191 (630)
++...+.++.+.+++.+++.+...+..+-+|- .+.+.+. ......+..+.+.|++..++++. |.+++.+...++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe
Confidence 45668999999998887766644433444442 2333321 22345788999999998887776 7877765333443
Q ss_pred eeEeec----CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee-cCCceeeeeEEecCCccCCCCCE
Q 006808 192 MQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLY 266 (630)
Q Consensus 192 ~~~~~~----h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 266 (630)
-..+.. +...+.++.+.+++..++++. ++.| ++....++.- ...... ..+..+.. +.+. ++ ..
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~--~g~i-~~S~DgG~tW--~~~~~~~~~~~~~~~-v~~~-----~~-~~ 305 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG--AGAL-LCSQDGGQTW--QQDVDVKKVPSNFYK-ILFF-----SP-DQ 305 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEES--TTCE-EEESSTTSSC--EECGGGTTSSSCCCE-EEEE-----ET-TE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeC--CCeE-EEeCCCCccc--EEcCccCCCCCCeEE-EEEE-----CC-Cc
Confidence 222221 223588899988777666543 6766 4455544321 111110 11223333 3332 23 45
Q ss_pred EEEEecCCcEEEEEc
Q 006808 267 VLAISETGVCYIWYG 281 (630)
Q Consensus 267 l~s~s~dg~i~iwd~ 281 (630)
+++++.+|.|.-++-
T Consensus 306 ~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 306 GFILGQKGILLRYVT 320 (327)
T ss_dssp EEEECSTTEEEEECC
T ss_pred eEEEcCCceEEEEcC
Confidence 667778898776653
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.18 E-value=0.19 Score=53.90 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=92.9
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
+|+. +..+.|+..++.+......+....-..+.+++|++.+..|+.+ ..++.|..+++........+.........++
T Consensus 8 ~Ll~-s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLF-SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEE-EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEE-EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 4444 4667899999987654333332334578999999976665544 5678899999875544333433334567899
Q ss_pred EccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC-CCeEEEEEcCCCc
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-ERYIALWRTDGVK 233 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~-d~~i~vwd~~~~~ 233 (630)
+.+.+..|+.+. +.|.+.++........+...-.....|++.|...+|+.+... .+.|...++....
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 988666555554 789999986543222222334457899999966666665422 4577777776554
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.074 Score=52.33 Aligned_cols=135 Identities=11% Similarity=0.126 Sum_probs=84.2
Q ss_pred CCCeEEEEEccCC--eee-EEccC----CCCCCEEEEEEec--CCC-EEEEEe-C--CCcEEEEeCCCC-c---eeEEee
Q 006808 94 GGGDVLALAVSAG--QLK-WRLSD----CHPGGVSAISFAT--HGS-CIYSAG-A--DGMVCEIDPLTG-S---LLGKFR 156 (630)
Q Consensus 94 ~~g~v~iwd~~~~--~~~-~~~~~----~h~~~v~~~~~s~--~g~-~l~s~~-~--dg~v~iwd~~~~-~---~~~~~~ 156 (630)
.+|.|.++|+.+. +.. ..+.. ........+.+.+ +|. +|+.+. . +.+|.+|++... . .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999999742 221 12211 1234678888876 454 455553 2 457778776543 2 233343
Q ss_pred cCC-CCeEEEEEccCCCEEEEeC-------------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 157 AST-KGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 157 ~~~-~~v~~l~~~p~~~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
+.. .....+.+.++|.++++.. |.|+.++. ++ +..+...-...+.++|+||+++|++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 322 3678999999999877753 34555554 33 2223223345689999999999888
Q ss_pred EeeCCCeEEEEEcCC
Q 006808 217 SAVGERYIALWRTDG 231 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~ 231 (630)
+.+..+.|..|++..
T Consensus 238 adt~~~~I~~~~~~~ 252 (355)
T 3sre_A 238 AELLAHKIHVYEKHA 252 (355)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred EeCCCCeEEEEEECC
Confidence 877788999999874
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.08 E-value=0.22 Score=47.58 Aligned_cols=239 Identities=13% Similarity=0.149 Sum_probs=139.1
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
|+.+=+.-.+|..+.+|.=. ..++.|||+++...+..+.- ..++.--.|...
T Consensus 66 pi~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-------------------~e~VvfWkWis~-------- 117 (365)
T 2xzh_A 66 PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISL-------- 117 (365)
T ss_dssp ECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCEEEEEECSS--------
T ss_pred ccccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-------------------CCccEEEEecCC--------
Confidence 34444455788888888766 57899999999988876541 224555667664
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCC----CCCEEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCceeE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~-------~dg~v~iwd~~~~~~~~ 153 (630)
+.|+..+ +..|+-|++........++..| ...|..-..+++.++++..| -.|.+.+|..+.+ ..+
T Consensus 118 --~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ 193 (365)
T 2xzh_A 118 --NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQ 193 (365)
T ss_dssp --SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEE
T ss_pred --CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccc
Confidence 3344444 3569999997644333443333 24678888888999866544 2367888887644 445
Q ss_pred EeecCCCCeEEEEEc--cC-CCEEEEeC-----CeEEEEECCCC---ce------eeEe-ec--CCCCeEEEEEeeCCcE
Q 006808 154 KFRASTKGISCMAVS--SD-GKMLATAA-----GQLKTFNCSDH---KK------MQKF-SG--HPGAVRFMTFSDNGKY 213 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~--p~-~~~l~~~~-----g~i~lwd~~~~---~~------~~~~-~~--h~~~v~~l~~sp~~~~ 213 (630)
.+.+|.+....+.+. +. ...++.+. +.+++.++... .. +..+ +. ...-.-++..++....
T Consensus 194 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygv 273 (365)
T 2xzh_A 194 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 273 (365)
T ss_dssp EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTE
T ss_pred eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCE
Confidence 667665543333221 11 12333332 58888888432 11 1111 11 1223456777776666
Q ss_pred EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
++... .-|.|++||+.++... ....+.....++++. . ....=+++....|.|.--.+...+.
T Consensus 274 iyviT-K~G~ihlyDleTgt~i---~~nrIS~d~iF~ta~-~------~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 274 VFLIT-KYGYIHLYDLETGTCI---YMNRISGETIFVTAP-H------EATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp EEEEE-TTSEEEEEETTTCCEE---EEEECCSSCEEEEEE-E------GGGTEEEEEETTCEEEEEEECTTTH
T ss_pred EEEEe-CCcEEEEEEcccCcEE---EEeccCCCceEEecc-c------CCCCcEEEEcCCCEEEEEEECcccE
Confidence 66666 5899999999999743 222333333333322 2 2334455556777776655554443
No 307
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.05 E-value=0.072 Score=51.55 Aligned_cols=173 Identities=6% Similarity=0.007 Sum_probs=84.8
Q ss_pred CeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCceeE--EeecCCCCeEEEEE
Q 006808 96 GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLG--KFRASTKGISCMAV 167 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~l~~ 167 (630)
..+.+||+.++....... .........+.+ +++.++.|+.+ ..+.+||+.+.+-.. .+........++.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 358899998876432111 111111222222 56666666543 368889987654221 12211112222222
Q ss_pred ccCCCEEEEeC-------CeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeCC----CeEEEEEcCCCcc
Q 006808 168 SSDGKMLATAA-------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKK 234 (630)
Q Consensus 168 ~p~~~~l~~~~-------g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~d----~~i~vwd~~~~~~ 234 (630)
++.+++.|+ ..+.+||+.+.+-. ..++........+.+ +++.++.+|..+ ..+.+||+.+.+-
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 566777765 36899998876422 112211111222222 566666666321 4689999887652
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-----CcEEEEEcCCc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 284 (630)
. .+..+........++. -++..++.|+.+ ..+.+||..+.
T Consensus 244 ~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 244 T---FVAPMKHRRSALGITV-------HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp E---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred E---ECCCCCCCccceEEEE-------ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 1112222211112222 245666666643 34677776554
No 308
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.00 E-value=0.096 Score=51.23 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=70.5
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec----CCCCeEEEEEccCCCEEEEeC-CeEEEEECCCC
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA-GQLKTFNCSDH 189 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~ 189 (630)
.....+..+.+.+++..+ .++.+|.++..+...++....+.. ....+.++.+.|++.+++++. +.| ++....|
T Consensus 202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG 279 (327)
T 2xbg_A 202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGG 279 (327)
T ss_dssp CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTT
T ss_pred CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCC
Confidence 345678999999988654 555678877764333443333321 123588999999888888877 666 4555555
Q ss_pred ceeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 190 KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 190 ~~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
+.-..+. .+...+.++.|.+++.. ++++ .+|.|.-++-
T Consensus 280 ~tW~~~~~~~~~~~~~~~v~~~~~~~~-~~~G-~~G~i~~~~~ 320 (327)
T 2xbg_A 280 QTWQQDVDVKKVPSNFYKILFFSPDQG-FILG-QKGILLRYVT 320 (327)
T ss_dssp SSCEECGGGTTSSSCCCEEEEEETTEE-EEEC-STTEEEEECC
T ss_pred cccEEcCccCCCCCCeEEEEEECCCce-EEEc-CCceEEEEcC
Confidence 5444443 23456788999876654 4555 4887766553
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.93 E-value=0.16 Score=49.20 Aligned_cols=142 Identities=9% Similarity=0.022 Sum_probs=71.5
Q ss_pred CcEEEEEeC-----C------CeEEEEEccCCeeeEEccCCCC-CCEEEEEEecCCCEEEEEeCC--------CcEEEEe
Q 006808 86 SSLLVLGTG-----G------GDVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGAD--------GMVCEID 145 (630)
Q Consensus 86 ~~~l~~~~~-----~------g~v~iwd~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~d--------g~v~iwd 145 (630)
+.+++.|+. . ..+.+||+.+++-...-..... .....+.+ ++..++.|+.+ ..+.+||
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEEC
Confidence 566677763 1 1277899988764311110010 11112222 55566666632 3588999
Q ss_pred CCCCcee--EEeecCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcE
Q 006808 146 PLTGSLL--GKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 146 ~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~ 213 (630)
+.+.+-. ..+...... .+++. .++++++.|+ +.+.+||+.+.+-. ..++........+ .-+++.
T Consensus 124 ~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i 199 (315)
T 4asc_A 124 RLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT--VHDGRI 199 (315)
T ss_dssp TTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEE
T ss_pred CCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE--EECCEE
Confidence 8876421 112111112 22222 3566767665 36899998876422 2222111111222 236677
Q ss_pred EEEEeeCCC----eEEEEEcCCCc
Q 006808 214 VLSSAVGER----YIALWRTDGVK 233 (630)
Q Consensus 214 l~~~~~~d~----~i~vwd~~~~~ 233 (630)
++.+|..+. .+.+||+.+.+
T Consensus 200 yv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 200 IVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEeccCCCCccceEEEEECCCCe
Confidence 777774322 58888888764
No 310
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.92 E-value=0.032 Score=57.47 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=88.2
Q ss_pred EEEEeC-CCeEEEEEccCCeeeEEccCC--CCCCEEEEEE-------ecCCCEEEEEeCCC-------cEEEEeCCC-Cc
Q 006808 89 LVLGTG-GGDVLALAVSAGQLKWRLSDC--HPGGVSAISF-------ATHGSCIYSAGADG-------MVCEIDPLT-GS 150 (630)
Q Consensus 89 l~~~~~-~g~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~-------s~~g~~l~s~~~dg-------~v~iwd~~~-~~ 150 (630)
|+++.. .+.|++.|+.++........+ .......++| +++|++|+.+...+ .|.+++... +.
T Consensus 154 Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~ 233 (496)
T 3kya_A 154 LYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGT 233 (496)
T ss_dssp EEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSC
T ss_pred EEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCc
Confidence 444444 466999999888775332221 1235899999 99999777765543 266676333 22
Q ss_pred ee-----EEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECC-------CCce-----------eeE-ee-cCCCCe
Q 006808 151 LL-----GKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-------DHKK-----------MQK-FS-GHPGAV 202 (630)
Q Consensus 151 ~~-----~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~-------~~~~-----------~~~-~~-~h~~~v 202 (630)
.. +.+... .....++++|++..|+++. +.|+.+|+. ++.. ... +. +.....
T Consensus 234 ~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p 312 (496)
T 3kya_A 234 FDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWE 312 (496)
T ss_dssp CSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCC
T ss_pred eeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCc
Confidence 21 222221 2345788999655555544 789999987 5543 112 21 223456
Q ss_pred EEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 203 RFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|+|+|+|++|+.+....+.|+.++...
T Consensus 313 ~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 313 FQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 89999999997777665678898876543
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.86 E-value=0.34 Score=47.79 Aligned_cols=198 Identities=10% Similarity=0.135 Sum_probs=95.3
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++|.|+|+++++ ..+|.|++++ ++.. ..+.... + +.. + ......+++.+.-.. +..|
T Consensus 35 ~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~--v----~~~----g--~~~p~gia~~pdf~~------~g~l 92 (352)
T 2ism_A 35 ALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELS--V----YHR----G--ESGLLGLALHPRFPQ------EPYV 92 (352)
T ss_dssp EEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCEE
T ss_pred EEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecce--E----eec----C--CCCceeEEECCCCCC------CCEE
Confidence 5599999986555 5569999998 4442 1111110 0 000 0 112334555543111 2344
Q ss_pred EEEeCC------CeEEEEEccCCe-----eeEE-cc--CCCCCCEEEEEEecCCCEEEEEeC-------------CCcEE
Q 006808 90 VLGTGG------GDVLALAVSAGQ-----LKWR-LS--DCHPGGVSAISFATHGSCIYSAGA-------------DGMVC 142 (630)
Q Consensus 90 ~~~~~~------g~v~iwd~~~~~-----~~~~-~~--~~h~~~v~~~~~s~~g~~l~s~~~-------------dg~v~ 142 (630)
+++... +.|..|+...+. .+.. +. .+.......++|.|+|.++++.+. .|.|.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ 172 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKIL 172 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEE
Confidence 444432 567788876431 1212 22 111122368999999976655432 25666
Q ss_pred EEeCCCC------------ceeEEeecCCCCeEEEEEcc-CCCEEEEeC--CeE------EEEECCCCc-----------
Q 006808 143 EIDPLTG------------SLLGKFRASTKGISCMAVSS-DGKMLATAA--GQL------KTFNCSDHK----------- 190 (630)
Q Consensus 143 iwd~~~~------------~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i------~lwd~~~~~----------- 190 (630)
.++.... .....+.........++|+| ++.++++-. +.+ .+.-+..+.
T Consensus 173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 173 RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG 252 (352)
T ss_dssp EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence 6665420 01111111112356789999 566555433 231 122222221
Q ss_pred -------eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 191 -------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 191 -------~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
++..+. +......++| .+|..+++ ....+.|...++...
T Consensus 253 ~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~-~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 253 NDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVA-GLRGQALLRLVLEGE 298 (352)
T ss_dssp CCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEE-ETTTTEEEEEEEEEE
T ss_pred CCCCCcCCeEecC-CCCCCcceEE-ECCEEEEE-ECCCCEEEEEEECCC
Confidence 122222 2234567787 46655544 435667777776543
No 312
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.83 E-value=0.44 Score=54.89 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=85.5
Q ss_pred CcEEEEEe----------CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-
Q 006808 86 SSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154 (630)
Q Consensus 86 ~~~l~~~~----------~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~- 154 (630)
..++++|+ ..|.|.+|++..++..........++|++++-- +| +|++| ...+|++|++...+.++.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~ 920 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTE 920 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEE
Confidence 56888888 357799999976554322223456789888744 45 44444 357899999986654431
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEE--EECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKT--FNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~l--wd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
..... .|..+.....+.++++|+ ..|.+ |+...++....- ..+..+++++.|-.++ .++.+. .+|.|.++..
T Consensus 921 ~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD-~~gNl~vl~~ 997 (1158)
T 3ei3_A 921 CNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAE-NAFNLFVCQK 997 (1158)
T ss_dssp EEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEE-TTSEEEEEEE
T ss_pred eeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEc-CCCcEEEEec
Confidence 11111 233333333577888888 44444 555554433222 2345678999987665 445554 6899999876
Q ss_pred CC
Q 006808 230 DG 231 (630)
Q Consensus 230 ~~ 231 (630)
..
T Consensus 998 ~~ 999 (1158)
T 3ei3_A 998 DS 999 (1158)
T ss_dssp CT
T ss_pred CC
Confidence 55
No 313
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.66 E-value=0.52 Score=45.59 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=65.1
Q ss_pred EEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCC-------CcEEEEeCCCCceeEE--eecCCCCeEEEEE
Q 006808 98 VLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLLGK--FRASTKGISCMAV 167 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d-------g~v~iwd~~~~~~~~~--~~~~~~~v~~l~~ 167 (630)
+.+||+.+++....-. .........+.+ ++..++.|+.+ ..+.+||+.+.+-... +...... .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE
Confidence 7788988876532111 011111122222 56667777654 2578888876542221 1111111 12222
Q ss_pred ccCCCEEEEeC--------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCC----CeEEEEEcCCCc
Q 006808 168 SSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVK 233 (630)
Q Consensus 168 ~p~~~~l~~~~--------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d----~~i~vwd~~~~~ 233 (630)
.++++++.|+ +.+.+||+.+.+-.. .++........+. -+++.++.+|..+ ..+.+||+.+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 4667777765 258999998765322 1211111112222 3566667766422 257788887764
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.65 E-value=0.24 Score=47.48 Aligned_cols=141 Identities=12% Similarity=0.093 Sum_probs=73.2
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCeeeE--EccCCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~~~~ 153 (630)
+.+++.|+.+ ..+.+||+.+++... .... ......++.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 4556666543 358899998876432 2211 1111222222 66666777654 458899987764322
Q ss_pred E--eecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeE--eecCCCCeEEEEEeeCCcEEEEEeeCC-
Q 006808 154 K--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (630)
Q Consensus 154 ~--~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~~~~~~d- 221 (630)
. +........++. -++++++.|+ ..+.+||+.+.+-... ++........+ .-+++.++.+|...
T Consensus 190 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 190 VTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGN 265 (301)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSS
T ss_pred CCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCC
Confidence 1 111111222222 2566777765 3689999987653221 22111111222 23666666666322
Q ss_pred ---CeEEEEEcCCCc
Q 006808 222 ---RYIALWRTDGVK 233 (630)
Q Consensus 222 ---~~i~vwd~~~~~ 233 (630)
..+.+||+.+.+
T Consensus 266 ~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 266 SLLSSIECYDPIIDS 280 (301)
T ss_dssp SBEEEEEEEETTTTE
T ss_pred cccccEEEEcCCCCe
Confidence 357888887754
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.015 Score=56.78 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=73.4
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE-eCCC
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG-TGGG 96 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~-~~~g 96 (630)
.+++.++.||.|.-+|..+|+....+.... ........ +... +. ++..++.. +.+|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~---~~p~~~~~---~~~~---------~~--------~~~~~vv~p~~dG 67 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN---FQPLIEIQ---EPSR---------LE--------TYETLIIEPFGDG 67 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG---SCCSEECC---CSCT---------TT--------SSEEEEECCSTTT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc---cCCcEEec---CCcc---------cc--------CCcEEEEEECCCC
Confidence 478889999999999999999999886430 00000000 0000 00 02333333 6899
Q ss_pred eEEEEEccCCeeeEEccCC---CCCCEEE---EEE-----ecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 97 DVLALAVSAGQLKWRLSDC---HPGGVSA---ISF-----ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~---h~~~v~~---~~~-----s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
.|..++..+|.....+... ..+++.. ... ...+..+++|+.+|.+...|+.+|+.+..+...
T Consensus 68 ~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 68 NIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred EEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 9999999888654433211 2233332 000 014567899999999999999999999888743
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.47 E-value=0.82 Score=45.58 Aligned_cols=238 Identities=13% Similarity=0.155 Sum_probs=138.1
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
|+.+=+.-.+|..+.+|.=. ..++.|||+++...+..+.- ..++.--.|....
T Consensus 65 pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-------------------~e~VvfWkWis~~------- 117 (494)
T 1bpo_A 65 PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISLN------- 117 (494)
T ss_dssp ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCCCEEEEEETT-------
T ss_pred ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-------------------CCCceEEEecCCC-------
Confidence 44444556788888888765 57899999999888776541 1234456676643
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCC----CCCEEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCceeE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~-------~dg~v~iwd~~~~~~~~ 153 (630)
.|+..+ +..|+-|++........++..| ...|..-..+++.++++..| -.|.+.+|..+.+ ..+
T Consensus 118 ---~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ 192 (494)
T 1bpo_A 118 ---TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQ 192 (494)
T ss_dssp ---EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEE
T ss_pred ---eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccc
Confidence 344443 4569999997644333333333 24688888889999876544 2467888887644 345
Q ss_pred EeecCCCCeEEEEEccC---CCEEEEeC-----CeEEEEECCCC---ce------eeEe-ec--CCCCeEEEEEeeCCcE
Q 006808 154 KFRASTKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDH---KK------MQKF-SG--HPGAVRFMTFSDNGKY 213 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~---~~~l~~~~-----g~i~lwd~~~~---~~------~~~~-~~--h~~~v~~l~~sp~~~~ 213 (630)
.+.+|.+....+.+.-+ ...++.+. +.+++.++... .. +..+ +. ...-.-++..++....
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence 56766554433333211 12333332 68899988542 11 1111 11 1223456777877766
Q ss_pred EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
++... .-|.|++||+.++... ....+.....++ .+.. ....=+++....|.|.--.+...+
T Consensus 273 iyviT-K~G~i~lyDleTgt~i---~~nrIs~~~iF~--t~~~-----~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 273 VFLIT-KYGYIHLYDLETGTCI---YMNRISGETIFV--TAPH-----EATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEE-TTSEEEEEETTTCCEE---EEEECCSSCEEE--EEEE-----TTTTEEEEEETTCEEEEEEECTTT
T ss_pred EEEEe-cCceEEEEecccceee---eeecccCCceEE--eccc-----CCCCcEEEEccCceEEEEEEcccc
Confidence 66666 6899999999998743 222222333332 2222 233445555677766655544433
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.47 E-value=0.77 Score=45.26 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=98.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..++|.|+|+++++ ..+|.|++++ .++. ..+.... + +.. + ......+++.+.-.. +..
T Consensus 32 ~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~--v----~~~----g--~~g~~gia~~pdf~~------~g~ 89 (354)
T 3a9g_A 32 WSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFD--V----ANV----G--EAGLLGLALHPEFPK------KSW 89 (354)
T ss_dssp EEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCE
T ss_pred eEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccc--e----eec----C--CCceeeEEeCCCCCc------CCE
Confidence 35599999985554 5569999987 3454 2222110 0 000 0 112334555443111 234
Q ss_pred EEEEeC----C----CeEEEEEccCC-------eeeEE-ccCCCCCCEEEEEEecCCCEEEEEeC-------------CC
Q 006808 89 LVLGTG----G----GDVLALAVSAG-------QLKWR-LSDCHPGGVSAISFATHGSCIYSAGA-------------DG 139 (630)
Q Consensus 89 l~~~~~----~----g~v~iwd~~~~-------~~~~~-~~~~h~~~v~~~~~s~~g~~l~s~~~-------------dg 139 (630)
|+++.. + ..|..|+...+ +.+.. +..+.......++|.|+|.++++.+. .|
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence 444443 2 45777776654 11111 21111112467999999986666432 24
Q ss_pred cEEEEeCCCCc--------eeEEe-ecCCCCeEEEEEcc-CCCEEEEeCC-----eEEEEECCC--------C-------
Q 006808 140 MVCEIDPLTGS--------LLGKF-RASTKGISCMAVSS-DGKMLATAAG-----QLKTFNCSD--------H------- 189 (630)
Q Consensus 140 ~v~iwd~~~~~--------~~~~~-~~~~~~v~~l~~~p-~~~~l~~~~g-----~i~lwd~~~--------~------- 189 (630)
.|..++.. ++ ....+ .++. ....++|+| +|.++++-.+ .|.+...-. +
T Consensus 170 ~I~ri~~d-G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 170 KILRVDEE-GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp EEEEECTT-SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred EEEEEcCC-CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCC
Confidence 56666653 22 01112 2232 346899999 6766555432 344432111 0
Q ss_pred -ceeeEeecCCCCeEEEEEe-------eCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 190 -KKMQKFSGHPGAVRFMTFS-------DNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 190 -~~~~~~~~h~~~v~~l~~s-------p~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.++..+.........++|. .+|.++++. ...+.|...++...
T Consensus 248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~-~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIAC-LRGSMLAAVNFGDN 297 (354)
T ss_dssp CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEE-TTTTEEEEEEECGG
T ss_pred cCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEE-cCCCEEEEEEECCC
Confidence 1222221123456788884 456555544 35677888887653
No 318
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.44 E-value=0.58 Score=46.08 Aligned_cols=21 Identities=10% Similarity=-0.119 Sum_probs=14.6
Q ss_pred CCCEEEEeeC-CCcEEEEECCC
Q 006808 16 ALDYFAICSG-DARIKIWDTLK 36 (630)
Q Consensus 16 dg~~las~s~-dg~i~vwd~~~ 36 (630)
++.+++.|+. ...+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 6677777764 45688888864
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.35 E-value=1.5 Score=50.65 Aligned_cols=176 Identities=11% Similarity=0.116 Sum_probs=100.9
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEe---cC-CCEEEEEe----------CCCcEEEEeCCCCceeEEee-cCCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFA---TH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFR-ASTK 160 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s---~~-g~~l~s~~----------~dg~v~iwd~~~~~~~~~~~-~~~~ 160 (630)
+.|++.|..+.+.+..+.-.....+.+++.. .+ ..+|+.|. ..|.|.+|++..++.....+ ...+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 4588999988887655544444556666543 22 35777775 34789999987543322211 2356
Q ss_pred CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE--cCCCccccce
Q 006808 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR--TDGVKKQSAS 238 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd--~~~~~~~~~~ 238 (630)
+|++++-- +|+++++.+..|++|++...+.++.-..+-..|..+.....+.+++++.. -+.+.++. ....+..
T Consensus 887 ~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~-~~Sv~~~~y~~~~~~L~--- 961 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDL-MRSVLLLAYKPMEGNFE--- 961 (1158)
T ss_dssp CEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEES-SBCEEEEEEETTTTEEE---
T ss_pred cCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEh-hheEEEEEEEcCCCeEE---
Confidence 78887644 46666666689999999876544411111112333334345778888764 44455544 3333221
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.+........+.++.+- +...++.+..+|.+.++....
T Consensus 962 -~~a~D~~~~~vta~~~l------d~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 962 -EIARDFNPNWMSAVEIL------DDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp -EEEECCSCBCEEEEEEE------ETTEEEEEETTSEEEEEEECT
T ss_pred -EEEeecccccEEEEEEE------ccCcEEEEcCCCcEEEEecCC
Confidence 22222233333344432 235788899999999987644
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.32 E-value=0.37 Score=46.23 Aligned_cols=142 Identities=12% Similarity=0.070 Sum_probs=72.8
Q ss_pred CcEEEEEeCCC-----eEEEEEccCCeeeEEccCCCC-CCEEEEEEecCCCEEEEEeCC-------CcEEEEeCCCCcee
Q 006808 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLL 152 (630)
Q Consensus 86 ~~~l~~~~~~g-----~v~iwd~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~d-------g~v~iwd~~~~~~~ 152 (630)
+.+++.|+.++ .+.+||+.++.....-..... ....++.+ +++.++.|+.+ ..+.+||+.+.+-.
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 55666666553 488899988765322111111 11122222 56666666542 35889998766422
Q ss_pred E--EeecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 153 G--KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 153 ~--~~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
. .+........++. -++++++.|+ +.+.+||+.+.+-.. .+........ + ..-+++.++.+|...
T Consensus 187 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~-~~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG-V-CAVNGLLYVVGGDDG 262 (302)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-E-EEETTEEEEECCBCS
T ss_pred ECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe-E-EEECCEEEEECCcCC
Confidence 2 1221111222222 2567777775 378999998765322 1211111111 2 223566667766322
Q ss_pred ----CeEEEEEcCCCc
Q 006808 222 ----RYIALWRTDGVK 233 (630)
Q Consensus 222 ----~~i~vwd~~~~~ 233 (630)
..+.+||+.+.+
T Consensus 263 ~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 263 SCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSBCCCEEEEETTTTE
T ss_pred CcccccEEEEcCCCCe
Confidence 248888887764
No 321
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.30 E-value=1.5 Score=46.84 Aligned_cols=143 Identities=4% Similarity=-0.056 Sum_probs=90.2
Q ss_pred EEEEE-eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeEEe-ecCCCCeEE
Q 006808 88 LLVLG-TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKF-RASTKGISC 164 (630)
Q Consensus 88 ~l~~~-~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~ 164 (630)
.|+.+ ...+.|..+++...... .+....-..+.++++.+.++.| ++-+..+.|.+.++.... ...+ ...-.....
T Consensus 362 ~ly~sD~~~~~I~r~~~~g~~~~-~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~ 439 (619)
T 3s94_A 362 YIYWTDDEVRAIRRSFIDGSGSQ-FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRA 439 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEE
T ss_pred eEEEEeCCCCeEEEEEcCCCccE-EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeee
Confidence 34444 45677888888764332 2222223467789998755554 454567889999987543 3333 333346789
Q ss_pred EEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 165 l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|++.|....|..+. +.|...++. |.....+ ...-...+.|++++++..|+.+-...+.|..+++....
T Consensus 440 iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 440 IVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred EEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 99999644444443 467777764 3323333 33345678999999887887776667789999986654
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.29 E-value=0.21 Score=57.33 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=112.8
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEeecC----CC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAS----TK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~----~~ 160 (630)
...|+.- ...++.|||+.+...+..+. ...+|.--.|-... .|+-.+ +..|.-|++.. ..+.+.|.-| ..
T Consensus 77 ~~iiALr-ag~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 77 SKVIALK-AGKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred cceEEEe-cCCeEEEeehHHhhhhcccc--cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccC
Confidence 3444444 36779999999887765553 33567777775443 444443 45699999963 3444445444 34
Q ss_pred CeEEEEEccCCCEEEEeC---------CeEEEEECCCCceeeEeecCCCCeEEEEEe--eCCcEEEEEee---CCCeEEE
Q 006808 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAV---GERYIAL 226 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~l~~~~~---~d~~i~v 226 (630)
.|..-..+++.++++..+ |.+.+|....+. .+.+.||.+.-..+... +....+++-+. ..+.++|
T Consensus 152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 677778889999887654 788999886543 34455665443333221 11122222111 1358899
Q ss_pred EEcCCC-c--c-cccee--e-eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 227 WRTDGV-K--K-QSASC--V-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 227 wd~~~~-~--~-~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
.++... . . ..... + +.-.....+.-.+-.+ +.-..+...+.-|.|++||+.||..+...+
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-----~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEec-----cccCEEEEEecCceEEEEecccchhhhhcc
Confidence 888553 1 0 00000 0 1111112222223333 555678888899999999999998876554
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.25 E-value=0.34 Score=46.55 Aligned_cols=142 Identities=10% Similarity=0.032 Sum_probs=73.0
Q ss_pred CcEEEEEeCC------CeEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCEEEEEeC---------CCcEEEEeCCCC
Q 006808 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTG 149 (630)
Q Consensus 86 ~~~l~~~~~~------g~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~---------dg~v~iwd~~~~ 149 (630)
+.+++.|+.+ ..+.+||+.++.-...-.... .....++.+ +++.++.|+. -..+.+||+.+.
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 5566666654 348999998876432211111 111122222 5666666653 345889998876
Q ss_pred ceeEE--eecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 150 SLLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 150 ~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
+-... +....... +++.. ++++++.|+ ..+.+||+.+.+- +..++........+.+ +++.++.+|
T Consensus 180 ~W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 255 (306)
T 3ii7_A 180 TWTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG 255 (306)
T ss_dssp EEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred eEEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence 42211 11111121 22222 566777765 3689999987642 2222211112222222 566666666
Q ss_pred eC----CCeEEEEEcCCCc
Q 006808 219 VG----ERYIALWRTDGVK 233 (630)
Q Consensus 219 ~~----d~~i~vwd~~~~~ 233 (630)
.. -..+.+||+.+.+
T Consensus 256 ~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 256 FQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp BCSSSBCCEEEEEETTTTE
T ss_pred cCCCeeeeeEEEEcCCCCe
Confidence 31 1467888887764
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.98 E-value=1.2 Score=43.72 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=19.4
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEEC
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDT 34 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~ 34 (630)
..++|.|+|++|+.+...|.|++++.
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEET
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 35699999993444556799999985
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.93 E-value=0.82 Score=44.05 Aligned_cols=180 Identities=8% Similarity=0.080 Sum_probs=89.7
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC----C-------CcEEEEeCCCCceeE--Ee
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-------GMVCEIDPLTGSLLG--KF 155 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----d-------g~v~iwd~~~~~~~~--~~ 155 (630)
++.|+ ..+.+||+.+++-...-...............++..++.|+. + ..+..||..+.+-.. .+
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44444 679999999987543221111122222233346777777773 1 127788887664211 11
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC----------CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCC--
Q 006808 156 RASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-- 221 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~----------g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d-- 221 (630)
....... +++.. ++.+++.|+ ..+.+||+.+.+- +..++..... ..+...+++.++.+|..+
T Consensus 86 p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 86 PSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG--HTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp SSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCTTS
T ss_pred Ccchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc--eeEEEECCEEEEEeCCCCCC
Confidence 1111111 22222 566666655 2588999987642 2222211111 112224566666666312
Q ss_pred ---CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCCc
Q 006808 222 ---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (630)
Q Consensus 222 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~ 284 (630)
..+.+||+.+.+-. .+..+..+.....+.. -++..++.|+.++ .+.+||..+.
T Consensus 162 ~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWK---ELAPMQTARSLFGATV-------HDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred cccceEEEEeCCCCeEE---ECCCCCCchhceEEEE-------ECCEEEEEeccCCCCccceEEEEECCCC
Confidence 36889998876422 1212222221122222 2466777776644 4777887654
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.93 E-value=0.54 Score=42.22 Aligned_cols=136 Identities=11% Similarity=0.026 Sum_probs=77.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCee------eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG------ 153 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~------~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~------ 153 (630)
..+|+....| +|+.=.+..+.. ..++-.+-=..+.+++|+|+|.+.+. .+|.+.-.+..+.....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4455666665 655544444431 11221111236779999998875444 77877777765532211
Q ss_pred Eeec-CCCCeEEEEEccCCCEEEEeCCeEEEEECCCCcee------eEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 154 KFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM------QKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 154 ~~~~-~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~------~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.+-. .-....++.|.|+|.+.++..|.|+-++..+...- ..+ .+-=..+..|.|.|+|...++. |+.++
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~ly 157 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFY 157 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEE
T ss_pred EecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEE
Confidence 1110 00124789999999999996699988876432111 111 1111467899999999876554 55654
Q ss_pred EE
Q 006808 226 LW 227 (630)
Q Consensus 226 vw 227 (630)
-+
T Consensus 158 r~ 159 (236)
T 1tl2_A 158 KA 159 (236)
T ss_dssp EE
T ss_pred ec
Confidence 33
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.051 Score=52.98 Aligned_cols=196 Identities=11% Similarity=0.039 Sum_probs=103.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEE--eCCCcEEEEeCCCCceeEEeec----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSA--GADGMVCEIDPLTGSLLGKFRA---- 157 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~--~~dg~v~iwd~~~~~~~~~~~~---- 157 (630)
+.++++++.||.|.-+|..+|+..+++......++....-. +.+..++.+ +.||.+..++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 56799999999999999999999988864421233221110 112244444 5899999999988855444332
Q ss_pred CCCCeEE---EEE-c----cCCCEEEEeC--CeEEEEECCCCceeeEeecCC--CC-----eEEEEEe-----eCCcEEE
Q 006808 158 STKGISC---MAV-S----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--GA-----VRFMTFS-----DNGKYVL 215 (630)
Q Consensus 158 ~~~~v~~---l~~-~----p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~--~~-----v~~l~~s-----p~~~~l~ 215 (630)
...++.. ..+ . ..+..+++++ |.+...|+.+|+.+..+.... +. ..|.... -.+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1122221 000 0 0344566666 899999999999998885321 11 0111110 1123455
Q ss_pred EEeeCCCeEEEEEcCCCccccceeeeeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
.+. .+..+.+.+ ++++ . ........ ...+..-....-.++.++.+ +.++.||.|.-+|..+|..+-
T Consensus 170 ig~-~~y~v~~~~-~sG~-~---W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGK-TIFELGIHS-YDGA-S---YNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEE-EEEECEECC-TTSC-C---CCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred Eec-ceEEEEEEC-CCCC-e---EEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 554 355666655 3332 1 11111000 00000000000000134565 457889999999998887654
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.76 E-value=0.49 Score=45.55 Aligned_cols=184 Identities=11% Similarity=-0.006 Sum_probs=90.6
Q ss_pred CcEEEEEeCC----CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC----C-----CcEEEEeCCCCcee
Q 006808 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-----GMVCEIDPLTGSLL 152 (630)
Q Consensus 86 ~~~l~~~~~~----g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----d-----g~v~iwd~~~~~~~ 152 (630)
+.+++.|+.+ ..+.+||+.+++....-.......-.+++. .++..++.|+. + ..+.+||+.+.+-.
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 5566666642 358999998876532111001111112222 25666666665 2 36888998766422
Q ss_pred E--EeecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeC-
Q 006808 153 G--KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG- 220 (630)
Q Consensus 153 ~--~~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~- 220 (630)
. .+.........+.+ ++++++.|+ ..+.+||+.+.+-.. .++........+.+ +++.++.+|..
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 179 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG 179 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence 1 12211122222222 667777765 368899988765321 12211111122222 56666666532
Q ss_pred ---CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-----CcEEEEEcCCc
Q 006808 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (630)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 284 (630)
-..+.+||+.+.+-. .+..+........++.+ ++..++.|+.+ ..+.+||+.+.
T Consensus 180 ~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWR---MITAMNTIRSGAGVCVL-------HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp SCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEEE-------TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCcCceEEEEeCCCCeEe---eCCCCCCccccceEEEE-------CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 135888998776422 11112222111122222 45666666654 45788887654
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.74 E-value=0.8 Score=44.23 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=52.8
Q ss_pred CcEEEEEeCC-------CeEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCEEEEEeC------CCcEEEEeCCCCce
Q 006808 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSL 151 (630)
Q Consensus 86 ~~~l~~~~~~-------g~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~ 151 (630)
+.+++.|+.+ ..+.+||+.+++-...-.... .....++. .+++.++.|+. -..+.+||+.+.+-
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 5566666653 248889998876532211000 01111222 35666666653 23589999887642
Q ss_pred eEE--eecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCc
Q 006808 152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHK 190 (630)
Q Consensus 152 ~~~--~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~ 190 (630)
... +...... .+++. -++++++.|+ ..+.+||+.+.+
T Consensus 188 ~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 188 KDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 211 1111112 22222 2567777765 367889988765
No 330
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.67 E-value=2.4 Score=43.73 Aligned_cols=250 Identities=10% Similarity=0.097 Sum_probs=132.8
Q ss_pred EEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccc--c--ccce----eeEEeccc-ccc---cccccCCc
Q 006808 20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH--L--SVDY----TCMKWLSV-DRK---KKRKLGSS 87 (630)
Q Consensus 20 las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~--~~~~----~~~~w~~~-~~~---~~~~~~~~ 87 (630)
|.+|+..|.|+|+-+-+++.+..+.- |++....|. . +..+ ..+.|-.. .+. ...+..++
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpV---------F~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGr 143 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGK 143 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECS---------SSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEE
T ss_pred EeecCcCceEEEEecCCcceEEEeec---------ccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeE
Confidence 66888899999999999999887652 222111110 0 0000 00112100 000 00011266
Q ss_pred EEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEEeC-------CCcE---------EE---Ee
Q 006808 88 LLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGA-------DGMV---------CE---ID 145 (630)
Q Consensus 88 ~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~-------dg~v---------~i---wd 145 (630)
+|++-.. +..|-..++..-++-..+.......+.++.|- |+-.++++++. ||.. .+ .|
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 7777664 55688888887776544444567789999986 67778887763 3321 11 12
Q ss_pred CCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C----------------eEEEEECCC-------Cc-------eeeE
Q 006808 146 PLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNCSD-------HK-------KMQK 194 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g----------------~i~lwd~~~-------~~-------~~~~ 194 (630)
..+.+....+.. .+....+...++|.+.++.+ + -+.++|+.. |+ -+..
T Consensus 224 ~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 224 AETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp TTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred CCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 222222111111 11223345566777766654 1 355555421 10 0111
Q ss_pred eec---------------CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc-------ccceeeeeecCCceeeee
Q 006808 195 FSG---------------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-------QSASCVLAMEHPAVFMDC 252 (630)
Q Consensus 195 ~~~---------------h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~ 252 (630)
+.+ -......+.++|||+++++++.-+.++.++++.+-.. ....++......+.-..-
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 211 1123356788999999999998888999999875321 001111111111222233
Q ss_pred EEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
..|. ++|....+.--|..|.-|++...
T Consensus 383 t~Fd-----~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 383 TTFD-----GRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEC-----SSSEEEEEETTTTEEEEEEHHHH
T ss_pred EEEC-----CCCceEeeeeecceEEEEeccHH
Confidence 4454 78855555567999999998653
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.47 E-value=0.33 Score=48.31 Aligned_cols=110 Identities=6% Similarity=-0.001 Sum_probs=71.9
Q ss_pred cCCCEEEEe-CCeEEEEECCCCceeeEeecC----CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc------
Q 006808 169 SDGKMLATA-AGQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------ 237 (630)
Q Consensus 169 p~~~~l~~~-~g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~------ 237 (630)
.+|.-++++ ++.||..++......+.+.-. -..|..+..+|+|.+|+..+ +..|.|..+..+.....
T Consensus 30 ~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCccccccc
Confidence 345444444 478888888755555555432 22688899999999999986 77899999884321100
Q ss_pred ---eeeeeec-----CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 238 ---SCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 238 ---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
...+.++ ....+..+.|++ ....+..|++-..|+.|++||+..
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHP---l~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHP---KSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECT---TBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccceeEEEcCCcccCCCCceeEEEecc---ccCCCCeEEEEecCCEEEEEEccc
Confidence 0122222 133455555554 124578999999999999999976
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.41 E-value=0.71 Score=53.16 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=112.8
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
||.+=+.-.+|..+.+|.=. ..++.|||+.+...+..+.- ..++.-..|..+.
T Consensus 65 pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-------------------~e~VvfWkWis~~------- 117 (1630)
T 1xi4_A 65 PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISLN------- 117 (1630)
T ss_pred cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-------------------CCCceEEEecCCC-------
Confidence 34333445677777777654 57889999887766654331 2234455676643
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCC----CCCEEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCceeE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~-------~dg~v~iwd~~~~~~~~ 153 (630)
.|+..+ +..|+-|++........++..| ...|..-..+++.++++..| -.|.+.+|....+ ..+
T Consensus 118 ---~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ 192 (1630)
T 1xi4_A 118 ---TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQ 192 (1630)
T ss_pred ---eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cch
Confidence 344433 4569999997544443444444 35688888888999876543 3478888887643 233
Q ss_pred EeecCCCCeEEEEEc--cC-CCEEEEeC-----CeEEEEECCCC---ce------eeEe-ec--CCCCeEEEEEeeCCcE
Q 006808 154 KFRASTKGISCMAVS--SD-GKMLATAA-----GQLKTFNCSDH---KK------MQKF-SG--HPGAVRFMTFSDNGKY 213 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~--p~-~~~l~~~~-----g~i~lwd~~~~---~~------~~~~-~~--h~~~v~~l~~sp~~~~ 213 (630)
.+.+|.+....+.+. +. ...++.+. +.++|.++... .. +..+ +. ...-..++..++....
T Consensus 193 ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (1630)
T ss_pred hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCE
Confidence 455555433333321 11 22333222 58888887543 11 1111 10 0112335566665555
Q ss_pred EEEEeeCCCeEEEEEcCCCccc
Q 006808 214 VLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
++..+ .-|.|.++|+.++...
T Consensus 273 iy~it-k~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 273 VFLIT-KYGYIHLYDLETGTCI 293 (1630)
T ss_pred EEEEe-cCceEEEEecccchhh
Confidence 55555 5889999999998743
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.10 E-value=5 Score=44.04 Aligned_cols=178 Identities=13% Similarity=0.136 Sum_probs=103.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-----cCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~ 160 (630)
...|.+|+.+| +..||..+..... ........|.++.. .+| .|+.++.+ -+..+|..+++.. .+. ....
T Consensus 73 ~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~ 146 (758)
T 3ott_A 73 NTYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNN 146 (758)
T ss_dssp TTEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCS
T ss_pred CCcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCC
Confidence 44677888765 7899998875432 11112335777754 344 57777666 5788998766543 231 1234
Q ss_pred CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecC------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.|.++...++|.+.+...+-+..|+..+++.. .+... ...|.++...+++..|..+. ++-+..++..+++.
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt--~~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT--EGYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE--EEEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE--CCCCeEEcCCCCeE
Confidence 68888888888877765556788888766532 22111 12478888777766555554 23588888776542
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
. ....+ ....+..++.. ++|.+.+ |+. +-+.+++..+.
T Consensus 224 ~---~~~~l--~~~~i~~i~~d-----~~g~lWi-gT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 224 K---QTEAF--HNNSIKSLALD-----GNGDLLA-GTD-NGLYVYHNDTT 261 (758)
T ss_dssp E---EEEEE--EEEEEEEEEEC-----TTCCEEE-EET-TEEEEECCTTS
T ss_pred E---eccCC--CCCeEEEEEEc-----CCCCEEE-EeC-CceeEEecCCC
Confidence 2 11111 12234444443 4555444 444 45777876554
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.01 E-value=2.9 Score=40.79 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=23.7
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (630)
..++|.|||.++++--..|+|++++..++..
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 3559999999777765589999998665554
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.70 E-value=2.1 Score=40.94 Aligned_cols=133 Identities=10% Similarity=0.126 Sum_probs=77.6
Q ss_pred CcEEEEEe--CC--CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeecCCC
Q 006808 86 SSLLVLGT--GG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 86 ~~~l~~~~--~~--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..|+... .+ ..|...++...... .+.. +.. ..|+++|+.|+-.+. ...|...++..+.....+. +
T Consensus 115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~ 185 (302)
T 3s25_A 115 GNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C 185 (302)
T ss_dssp TTEEEEEEESSSSCEEEEEEETTSCCCE-EEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S
T ss_pred CCEEEEEeecCCCCceEEEEECCCCCeE-EEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C
Confidence 55666665 23 34666666543332 3332 222 456778888776554 6788888887665443333 2
Q ss_pred CeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee-CCCeEEEEEcCCCc
Q 006808 161 GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVK 233 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~-~d~~i~vwd~~~~~ 233 (630)
... ..+.|++.+|+-.. ..|..-++.... ...+.. ..+ ..|+|++.+|+.+.. ....|..-++....
T Consensus 186 ~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 186 NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 222 34669888888765 367777776544 333432 223 348888998887632 23567777776544
No 336
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.61 E-value=2.8 Score=41.09 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=34.5
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCce------eeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKK------MQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~------~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
....++| .+|.++++.- +.|...++..... ...+......+..+++.|+|..+++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 4567777 4666555543 5777777654321 122222335788999999997666654
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.53 E-value=3.4 Score=39.45 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=72.6
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe----CCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
+.|+..++..++.. .+.. .. +..|++++++|+-.. ....|...++... ....+..+.. ..|+|++
T Consensus 88 ~~Iy~i~~dg~~~~-~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCE-EEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcce-Eeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEEC
Confidence 35777777766532 2221 12 236778888887665 3445666676533 3344443332 4567888
Q ss_pred CEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC-CeEEEEEcCCCc
Q 006808 172 KMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVK 233 (630)
Q Consensus 172 ~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d-~~i~vwd~~~~~ 233 (630)
+.|+..+ ..|+..++..+.....+. +... ..++|++.+|+-+...+ ..|..-++....
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 8887665 588999987665433333 2222 34669999988776333 256666666544
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.40 E-value=5.4 Score=41.16 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=50.9
Q ss_pred CeEEEEEccCCCEEEEeC---CeEEEEECCCCc------e-------eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 161 GISCMAVSSDGKMLATAA---GQLKTFNCSDHK------K-------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~------~-------~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
....+.++|||+++++++ .++.++|+..-. . ..... -.......+|.++| ..+++-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceE
Confidence 446789999999999998 699999987421 1 11222 23346788999999 556666579999
Q ss_pred EEEEcCCC
Q 006808 225 ALWRTDGV 232 (630)
Q Consensus 225 ~vwd~~~~ 232 (630)
..|++...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99998653
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.86 E-value=2.1 Score=41.99 Aligned_cols=135 Identities=14% Similarity=0.057 Sum_probs=61.9
Q ss_pred CeEEEEEccCCeeeE--EccCCCCCCEEEEEEecCCCEEEEEeC------CCcEEEEeC--CCCc--eeEEeecCCCCeE
Q 006808 96 GDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDP--LTGS--LLGKFRASTKGIS 163 (630)
Q Consensus 96 g~v~iwd~~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~--~~~~--~~~~~~~~~~~v~ 163 (630)
..+.+||+.+..-.. .+....... .+++.. +++.++.|+. ...+.+||+ .+.+ .+..+........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAG-AAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBS-CEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCccc-ccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 468999998876432 221111111 222222 5556666653 235777876 3322 1111111111112
Q ss_pred EEEEccCCCEEEEeC-C-----------------------eEEEEECCCCc--eeeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 164 CMAVSSDGKMLATAA-G-----------------------QLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~-g-----------------------~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
+.+...++++++.|+ . .+.+||+.+.+ .+..++..... ..+...+++.++.+
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEe
Confidence 112233566777765 1 47789987654 33333322222 22233467777777
Q ss_pred eeCC-----CeEEEEEcCCCcc
Q 006808 218 AVGE-----RYIALWRTDGVKK 234 (630)
Q Consensus 218 ~~~d-----~~i~vwd~~~~~~ 234 (630)
|... ..+.++++++++.
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSC
T ss_pred eeCCCCCEeeeEEEEEEcCcEe
Confidence 7422 1355567777653
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.59 E-value=7.2 Score=39.72 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=21.8
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (630)
..++|.|+|+++++-...+.|++++..++..
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence 4569999999777654445788887655543
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.58 E-value=2.8 Score=45.57 Aligned_cols=147 Identities=9% Similarity=0.103 Sum_probs=78.9
Q ss_pred CcEEEEEeCC----CeEEEEEccCCeeeEEc-c-----CCCCCCEEEEEEec-CCCEEEEEeCC------CcEEEEeCCC
Q 006808 86 SSLLVLGTGG----GDVLALAVSAGQLKWRL-S-----DCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLT 148 (630)
Q Consensus 86 ~~~l~~~~~~----g~v~iwd~~~~~~~~~~-~-----~~h~~~v~~~~~s~-~g~~l~s~~~d------g~v~iwd~~~ 148 (630)
+.+++.|+.+ ..+.+||+.++...... . ......-.+++..+ ++..++.||.+ ..+.+||+.+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 5566666643 35899999887653222 1 01111112333333 66677777643 2578889877
Q ss_pred Cce--eEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeE-----eecCCCCeEEEEEeeC-CcEEEE
Q 006808 149 GSL--LGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQK-----FSGHPGAVRFMTFSDN-GKYVLS 216 (630)
Q Consensus 149 ~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~-----~~~h~~~v~~l~~sp~-~~~l~~ 216 (630)
.+- +..+...... .+++...++.+++.|+ +.+.+||+.+.+-... ++.......++.+..+ ++.++.
T Consensus 478 ~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 478 REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 532 2112211112 2334434788888887 2799999987652211 1111122233555555 556666
Q ss_pred EeeC-C-----CeEEEEEcCCCc
Q 006808 217 SAVG-E-----RYIALWRTDGVK 233 (630)
Q Consensus 217 ~~~~-d-----~~i~vwd~~~~~ 233 (630)
+|.. + ..+.+||+.+..
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCcCCCCCeeeCcEEEEEccCCc
Confidence 6531 1 358899988876
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.40 E-value=6.8 Score=42.48 Aligned_cols=147 Identities=8% Similarity=0.025 Sum_probs=77.8
Q ss_pred CcEEEEEeCCC------eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeEEeec
Q 006808 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 86 ~~~l~~~~~~g------~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--~v~iwd~~~~~~~~~~~~ 157 (630)
+.+++.|+.++ .+.+||+.++.....-.......-.+++...++..++.||.++ .+.+||..+.+- ..+..
T Consensus 452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W-~~~~~ 530 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF-KDVTP 530 (695)
T ss_dssp TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE-EECCC
T ss_pred CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce-EEccC
Confidence 55667766432 4889999887543211101111112233323778888887654 689999887542 22211
Q ss_pred ------CCCCeEEEEEccC-CCEEEEeC---------CeEEEEECCCCce-----eeEeec---CCCCeEEEEEeeCCcE
Q 006808 158 ------STKGISCMAVSSD-GKMLATAA---------GQLKTFNCSDHKK-----MQKFSG---HPGAVRFMTFSDNGKY 213 (630)
Q Consensus 158 ------~~~~v~~l~~~p~-~~~l~~~~---------g~i~lwd~~~~~~-----~~~~~~---h~~~v~~l~~sp~~~~ 213 (630)
......++.+..+ +++++.|+ +.+.+||+.+..- ...+.. ....-.+++...+++.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i 610 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL 610 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence 1222233555655 66777765 2588999887761 122211 1111112333343666
Q ss_pred EEEEeeC-------CCeEEEEEcCCCc
Q 006808 214 VLSSAVG-------ERYIALWRTDGVK 233 (630)
Q Consensus 214 l~~~~~~-------d~~i~vwd~~~~~ 233 (630)
++.+|.. ...+.+||+.+..
T Consensus 611 yv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 611 LIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEECCccCCCCCCCCCeEEEEECCCCe
Confidence 6666631 2358888887764
No 343
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.02 E-value=7.3 Score=38.13 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=71.3
Q ss_pred EEEEeCCCeEEEEEccCCe-eeEEc--cCCCCCCEEEEEEecC---CCEEEEEeC----C----CcEEEEeCCCC--c--
Q 006808 89 LVLGTGGGDVLALAVSAGQ-LKWRL--SDCHPGGVSAISFATH---GSCIYSAGA----D----GMVCEIDPLTG--S-- 150 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~-~~~~~--~~~h~~~v~~~~~s~~---g~~l~s~~~----d----g~v~iwd~~~~--~-- 150 (630)
|+++...|.|++++. .+. .+..+ ..........|+|+|+ +..|+.+.. + ..|..|+.... .
T Consensus 42 l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~ 120 (354)
T 3a9g_A 42 YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLK 120 (354)
T ss_dssp EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEE
T ss_pred EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcC
Confidence 667777799999973 444 22221 1112356899999997 556655543 3 56778876543 1
Q ss_pred ---ee-EEeecC-CCCeEEEEEccCCCEEEEeC---------------CeEEEEECCCCce--------eeEe-ecCCCC
Q 006808 151 ---LL-GKFRAS-TKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHKK--------MQKF-SGHPGA 201 (630)
Q Consensus 151 ---~~-~~~~~~-~~~v~~l~~~p~~~~l~~~~---------------g~i~lwd~~~~~~--------~~~~-~~h~~~ 201 (630)
.+ ..+... ......|+|.|+|.++++.+ |.|.-++.. ++. ...+ .+|..
T Consensus 121 ~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf~~~~i~a~G~rn- 198 (354)
T 3a9g_A 121 EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPFPNSPIWSYGHRN- 198 (354)
T ss_dssp EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSSTTCCEEEECCSC-
T ss_pred ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCCCCCcEEEEccCC-
Confidence 11 112211 12346799999998777642 345555543 220 1112 23433
Q ss_pred eEEEEEee-CCcEEEEE
Q 006808 202 VRFMTFSD-NGKYVLSS 217 (630)
Q Consensus 202 v~~l~~sp-~~~~l~~~ 217 (630)
...++|+| ++..+++-
T Consensus 199 p~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 199 PQGIDWHRASGVMVATE 215 (354)
T ss_dssp CCEEEECTTTCCEEEEE
T ss_pred cceEEEeCCCCCEEEEe
Confidence 46899999 66655543
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.95 E-value=7.4 Score=38.04 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=70.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeee---EE---ccCCCCCCEEEEEEecC---CCEEEEEeC--------CCcEEEEeCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLK---WR---LSDCHPGGVSAISFATH---GSCIYSAGA--------DGMVCEIDPLT 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~---~~---~~~~h~~~v~~~~~s~~---g~~l~s~~~--------dg~v~iwd~~~ 148 (630)
++.++++...|.|++++.. +... .. +..........++|+|+ +..|+.+.. ...|..|++..
T Consensus 29 G~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~ 107 (353)
T 2g8s_A 29 NHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD 107 (353)
T ss_dssp TCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT
T ss_pred CCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC
Confidence 5535667778999999853 3321 11 11112346799999996 555555432 23566676643
Q ss_pred C--c--eeEE-eec------CCCCeEEEEEccCCCEEEEeC---------------CeEEEEECCCCc------------
Q 006808 149 G--S--LLGK-FRA------STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK------------ 190 (630)
Q Consensus 149 ~--~--~~~~-~~~------~~~~v~~l~~~p~~~~l~~~~---------------g~i~lwd~~~~~------------ 190 (630)
. + .... +.. .......|+|.|+|.++++.+ |.|.-++....-
T Consensus 108 ~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 187 (353)
T 2g8s_A 108 DLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGV 187 (353)
T ss_dssp TSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTS
T ss_pred CCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCC
Confidence 2 1 1111 111 111235799999997666642 356666764320
Q ss_pred eeeEe-ecCCCCeEEEEEee-CCcEEEE
Q 006808 191 KMQKF-SGHPGAVRFMTFSD-NGKYVLS 216 (630)
Q Consensus 191 ~~~~~-~~h~~~v~~l~~sp-~~~~l~~ 216 (630)
....+ .+|. ....++|+| +|..+++
T Consensus 188 ~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 188 RAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CccEEEEcCc-CccceEEECCCCCEEEE
Confidence 11122 2333 357899999 5655544
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.62 E-value=2.2 Score=38.27 Aligned_cols=137 Identities=9% Similarity=-0.001 Sum_probs=75.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCc------eeEEeec-CCCCeEEEEEccCCCEEEEeCCeEEEEECCCCcee-----eEeec
Q 006808 130 SCIYSAGADGMVCEIDPLTGS------LLGKFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM-----QKFSG 197 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~~~~------~~~~~~~-~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~-----~~~~~ 197 (630)
..|+....| +++.=...++. ...++-. .-..+..++|+|+|.+.++.+|.++-.+..+.... .+.-+
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG 83 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIG 83 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEec
Confidence 456666666 55554444433 1122221 12367899999999988885588877776553211 11111
Q ss_pred CC--CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce--eeeeecCCceeeeeEEecCCccCCCCCEEEEEecC
Q 006808 198 HP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (630)
Q Consensus 198 h~--~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 273 (630)
.. ..-.++.|.|+|.+.++ + |+.|+-++..+....... ........-..+..+.+. |+|.+.++. |
T Consensus 84 ~~Gw~~F~a~~fD~~G~LYav-~--dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-----p~G~Lyav~--d 153 (236)
T 1tl2_A 84 NGGWNQFQFLFFDPNGYLYAV-S--KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-----PNGYLYAVH--G 153 (236)
T ss_dssp CSCGGGCSEEEECTTSCEEEE-E--TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-----TTSCEEEEE--T
T ss_pred ccccccceEEEECCCCCEEEe-C--CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-----CCceEEEEe--C
Confidence 10 11478899999987666 3 688888876443322110 011111111234667776 888766665 7
Q ss_pred CcEE
Q 006808 274 GVCY 277 (630)
Q Consensus 274 g~i~ 277 (630)
|.++
T Consensus 154 g~ly 157 (236)
T 1tl2_A 154 QQFY 157 (236)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7744
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.92 E-value=22 Score=36.12 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=51.8
Q ss_pred CcEEEEEeCC-CeEEEEEccCCee--eEEccCC-----CCCCEEEEEEecC---CCEEEEEeC-------------CCcE
Q 006808 86 SSLLVLGTGG-GDVLALAVSAGQL--KWRLSDC-----HPGGVSAISFATH---GSCIYSAGA-------------DGMV 141 (630)
Q Consensus 86 ~~~l~~~~~~-g~v~iwd~~~~~~--~~~~~~~-----h~~~v~~~~~s~~---g~~l~s~~~-------------dg~v 141 (630)
++ |+++... +.|++++..++.. +..+... ......+|+|+|+ +..|+.+.. ...|
T Consensus 38 G~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v 116 (454)
T 1cru_A 38 NQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTII 116 (454)
T ss_dssp SC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEE
T ss_pred Cc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEE
Confidence 44 4455555 4788888765543 2222211 2457889999996 556655442 2356
Q ss_pred EEEeCCCC--c-----eeE-Eeec-CCCCeEEEEEccCCCEEEEeC
Q 006808 142 CEIDPLTG--S-----LLG-KFRA-STKGISCMAVSSDGKMLATAA 178 (630)
Q Consensus 142 ~iwd~~~~--~-----~~~-~~~~-~~~~v~~l~~~p~~~~l~~~~ 178 (630)
..|++..+ + .+. .+.. .......|+|.|+|.++++.+
T Consensus 117 ~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 117 RRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 66665322 1 111 1221 123468999999998777643
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.49 E-value=41 Score=36.64 Aligned_cols=181 Identities=14% Similarity=0.085 Sum_probs=97.8
Q ss_pred CcEEEEEeCCCeEEEEEccC------Ceee--EEc--cCC-CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSA------GQLK--WRL--SDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~------~~~~--~~~--~~~-h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (630)
...|.+|+..+-|.++|..+ .... ..+ ..+ ....|.++...++|..-+.++..+-+..+|..+++....
T Consensus 429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~ 508 (758)
T 3ott_A 429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL 508 (758)
T ss_dssp TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE
T ss_pred CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe
Confidence 34577788777788888653 1111 011 111 123589999888887554334445588899877654432
Q ss_pred eec-C--CCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEee--c-CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 155 FRA-S--TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--G-HPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 155 ~~~-~--~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~--~-h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
... . ...+.++....+|.+.+.+.+-+..|+..+++.. .+. + ....|.++... +|.. ..++ ..| |..++
T Consensus 509 ~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~gl~~~~i~~i~~~-~g~l-Wi~t-~~G-l~~~~ 583 (758)
T 3ott_A 509 FADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQ-SISFGSFSNNEILSMTCV-KNSI-WVST-TNG-LWIID 583 (758)
T ss_dssp CTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CCCC-BCCCCC---CCEEEEEEE-TTEE-EEEE-SSC-EEEEE
T ss_pred cCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCceE-EecccCCCccceEEEEEC-CCCE-EEEC-CCC-eEEEc
Confidence 211 1 2367888888888877766656888887665432 221 1 12457777664 6654 4444 344 78888
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
..+.+.. .+.+.. ..+....... ++ ..|..|+.+|.+ .|+...
T Consensus 584 ~~~~~~~----~~~~~~-~~~~~~~~~~-----~~-G~l~fG~~~Gl~-~f~p~~ 626 (758)
T 3ott_A 584 RKTMDAR----QQNMTN-KRFTSLLFDP-----KE-DCVYLGGADGFG-ISHSNL 626 (758)
T ss_dssp TTTCCEE----EC--CC-CCCSEEEEET-----TT-TEEEEECBSEEE-EEEC--
T ss_pred CCCceeE----EecCCC-CceeeeEEEC-----CC-CcEEEecCCceE-EEChhh
Confidence 8775432 111111 1122222222 34 456677777754 456543
No 348
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=85.82 E-value=27 Score=33.88 Aligned_cols=131 Identities=15% Similarity=0.223 Sum_probs=71.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeee--EEc---cCCCCCCEEEEEEecC---CCEEEEE---eCCCcEEEEeCCCC-----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLK--WRL---SDCHPGGVSAISFATH---GSCIYSA---GADGMVCEIDPLTG----- 149 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~--~~~---~~~h~~~v~~~~~s~~---g~~l~s~---~~dg~v~iwd~~~~----- 149 (630)
+.++++--..|.|++++...+... ..+ ..........|+|+|+ +..|+.. ..+..|.-|.+..+
T Consensus 43 G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~ 122 (347)
T 3das_A 43 GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGE 122 (347)
T ss_dssp SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTC
T ss_pred CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccc
Confidence 554444434899999987665432 111 1123457899999995 4455543 24556777765542
Q ss_pred -----cee-EEeec-CCCCeEEEEEccCCCEEEEeC---------------CeEEEEECCCCc-------eeeEe-ecCC
Q 006808 150 -----SLL-GKFRA-STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK-------KMQKF-SGHP 199 (630)
Q Consensus 150 -----~~~-~~~~~-~~~~v~~l~~~p~~~~l~~~~---------------g~i~lwd~~~~~-------~~~~~-~~h~ 199 (630)
+.+ ..+.. .......|.|.|+|.++++.+ |.|.-++....- ....+ .+|.
T Consensus 123 ~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R 202 (347)
T 3das_A 123 QLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR 202 (347)
T ss_dssp CBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS
T ss_pred cCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC
Confidence 111 11221 112346799999998777642 344444543210 01122 2444
Q ss_pred CCeEEEEEeeCCcEEEEE
Q 006808 200 GAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 200 ~~v~~l~~sp~~~~l~~~ 217 (630)
. ...++|+|+|..+++-
T Consensus 203 N-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 203 N-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp B-CCEEEECTTCCEEEEE
T ss_pred C-cceEEECCCCCEEEEe
Confidence 3 4688999988766553
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.48 E-value=53 Score=36.93 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=33.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 47788888888899999999999999999999988754
No 350
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.36 E-value=34 Score=39.41 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=32.1
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 35566667788899999999999999999999988754
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.13 E-value=28 Score=39.15 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=32.5
Q ss_pred eeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEec
Q 006808 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (630)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~ 44 (630)
.++++..++..++++-+.|+++|||++.+++++.+..
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3677888888999999999999999999999988754
No 352
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.90 E-value=48 Score=30.84 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=102.0
Q ss_pred CcEEEEEeCCCeEEE---EEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCc------eeEE
Q 006808 86 SSLLVLGTGGGDVLA---LAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS------LLGK 154 (630)
Q Consensus 86 ~~~l~~~~~~g~v~i---wd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~------~~~~ 154 (630)
...|+..+..|.++- |++..+.... ++ .....|.++.. + +..+++.++.+|.++...+.... ..-.
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~ 111 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIK 111 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEe
Confidence 445788888888653 5544332211 22 33456777654 4 46789999999999999865432 1112
Q ss_pred eecCCCCeEEEEEccCCC-EEEEeC-CeEEEEECCC---------CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCe
Q 006808 155 FRASTKGISCMAVSSDGK-MLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~-~l~~~~-g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~ 223 (630)
++. ...+..+....... .++... |.++.+.... |.....+. ....|.++...+++.+++..+ ..|.
T Consensus 112 lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T-~~G~ 188 (276)
T 3no0_A 112 LTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVIT-AKGR 188 (276)
T ss_dssp CCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEE-TTSC
T ss_pred cCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEe-CCCc
Confidence 332 23455554444433 444444 8877776532 11111222 224566665555566777766 5888
Q ss_pred EEEEEcCCCcccc--ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE--EEcCCc
Q 006808 224 IALWRTDGVKKQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI--WYGQNI 284 (630)
Q Consensus 224 i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i--wd~~~~ 284 (630)
++...+..-.... ...+..+......+.+... .+...++..+.+|.+.. ++....
T Consensus 189 ~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~------~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 189 VKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPI------KEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEE------SSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEe------CCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 8888865432211 1112222333344443333 23456777788888877 776443
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=76.30 E-value=50 Score=30.77 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=85.2
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++ . +|.|+.|-......+. +...-...|..++.... +.+.-. +|.|+.|=....-.+..-......|..++..
T Consensus 76 ~~l-~-~G~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G 149 (282)
T 3qhy_B 76 LAL-K-DGEVIAWGGNEDGQTT-VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG 149 (282)
T ss_dssp EEE-E-TTEEEEEECCTTSTTC-CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC
T ss_pred EEE-E-CCEEEEeeCCCCCCCC-CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc
Confidence 344 5 8999999765422210 11111246777776543 444445 9999999654322111111122356666665
Q ss_pred cCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCce
Q 006808 169 SDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV 248 (630)
Q Consensus 169 p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (630)
.....+++ .|.|+.|-......+..-..-...|..++.... +.++- . ++.++.|-........ . .......
T Consensus 150 ~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~-~G~v~~wG~n~~gqlg---~-p~~~~~~ 220 (282)
T 3qhy_B 150 VYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-K-DGKVIAWGDNRYKQTT---V-PTEALSG 220 (282)
T ss_dssp SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC---C-CGGGGSS
T ss_pred cCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-E-CCeEEEEECCCCCCCC---C-CcccCCC
Confidence 54444444 688888865442221111111245666665433 22333 3 8899999765543221 0 0011112
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
+..+.+ ...+.++.+ ||.|+.|-...
T Consensus 221 v~~i~~--------G~~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 221 VSAIAS--------GEWYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp CCEEEE--------CSSCEEEEE-TTEEEEESTTC
T ss_pred ceEEEc--------CCCEEEEEE-CCEEEEecCCC
Confidence 222222 223344445 99999996544
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=72.85 E-value=31 Score=35.03 Aligned_cols=100 Identities=12% Similarity=0.176 Sum_probs=59.5
Q ss_pred CEEEEEEecCCC-EEEEEeCCCcEEEEeCCCC---ceeEEee---------cCCCCeEEEEEccC----CCEEEEeC---
Q 006808 119 GVSAISFATHGS-CIYSAGADGMVCEIDPLTG---SLLGKFR---------ASTKGISCMAVSSD----GKMLATAA--- 178 (630)
Q Consensus 119 ~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~---~~~~~~~---------~~~~~v~~l~~~p~----~~~l~~~~--- 178 (630)
..+.|+|.|+|. .++++...|.|++++.... ..+..+. .....+..|+|+|+ +.+.++-+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 468999999985 4555668899999975322 1222211 11357889999996 44443322
Q ss_pred -----------CeEEEEECCC----------CceeeEee--cCCCCeEEEEEeeCCcEEEEEe
Q 006808 179 -----------GQLKTFNCSD----------HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 179 -----------g~i~lwd~~~----------~~~~~~~~--~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1344455532 12233332 1223467899999998777766
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=71.36 E-value=80 Score=30.91 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=57.3
Q ss_pred cEEEEeCCCC--ceeEEeecC------CCCeEEEEEc---cC----CCEEEEeC---CeEEEEECCCCceeeEee-----
Q 006808 140 MVCEIDPLTG--SLLGKFRAS------TKGISCMAVS---SD----GKMLATAA---GQLKTFNCSDHKKMQKFS----- 196 (630)
Q Consensus 140 ~v~iwd~~~~--~~~~~~~~~------~~~v~~l~~~---p~----~~~l~~~~---g~i~lwd~~~~~~~~~~~----- 196 (630)
.|.+||+.+. +.++.+.-. ...+..+++. |. +.++..+. +-|.++|+.+++..+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888776532 2357778887 32 34444444 689999999987655431
Q ss_pred ---------cC----CCCeEEEEEeeC----CcEEEEEeeCCCeEEEEEcC
Q 006808 197 ---------GH----PGAVRFMTFSDN----GKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 197 ---------~h----~~~v~~l~~sp~----~~~l~~~~~~d~~i~vwd~~ 230 (630)
|. ...+..|+++|+ ++.|+....... ++|.+.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~ 252 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVN 252 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEE
Confidence 00 136778889987 777777664332 445443
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=70.75 E-value=68 Score=29.83 Aligned_cols=169 Identities=14% Similarity=0.132 Sum_probs=86.7
Q ss_pred eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCC
Q 006808 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 172 (630)
+ +|.|+.|-......+. +.......|..++.... +.+.-. ||.|+.|=....-.+..-..-...|..++......
T Consensus 40 ~-~G~v~~wG~n~~Gqlg-~p~~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs 114 (282)
T 3qhy_B 40 K-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWAS 114 (282)
T ss_dssp E-TTEEEEEECCSSSTTS-CCGGGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEE
T ss_pred E-CCEEEEEeCCCCCCCC-CCccCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEE
Confidence 5 8999999765432211 11111235666666433 333334 89999996543211111011124677887777766
Q ss_pred EEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeee
Q 006808 173 MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (630)
Q Consensus 173 ~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (630)
.+++ .|.|+.|-....-.+..-......|..++.... +.++- . |+.++.|-........ + .......+..+
T Consensus 115 ~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l-~-~G~v~~wG~n~~gqlg---~-p~~~~~~v~~i 185 (282)
T 3qhy_B 115 YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAV-K-NGGVIAWGDNYFGQTT---V-PAEAQSGVDDV 185 (282)
T ss_dssp EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTTS---C-CGGGGSSEEEE
T ss_pred EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEE-E-CCEEEEecCCCCCCCC---C-ceecCCCeEEE
Confidence 7777 889999975542211111112345666654332 22222 2 6889999765533221 0 11111223333
Q ss_pred EEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.+ ...+.++. .+|.|+.|-....
T Consensus 186 ~~--------G~~hs~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 186 AG--------GIFHSLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp EE--------CSSEEEEE-ETTEEEEEECCTT
T ss_pred Ee--------cCCEEEEE-ECCeEEEEECCCC
Confidence 32 22344444 6999999975443
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=70.50 E-value=84 Score=30.77 Aligned_cols=133 Identities=11% Similarity=0.164 Sum_probs=81.6
Q ss_pred eEEEEEccCC--eeeEEccCC-----CCCCEEEEEEe---cC----CCEEEEEe-CCCcEEEEeCCCCceeEEee----c
Q 006808 97 DVLALAVSAG--QLKWRLSDC-----HPGGVSAISFA---TH----GSCIYSAG-ADGMVCEIDPLTGSLLGKFR----A 157 (630)
Q Consensus 97 ~v~iwd~~~~--~~~~~~~~~-----h~~~v~~~~~s---~~----g~~l~s~~-~dg~v~iwd~~~~~~~~~~~----~ 157 (630)
+|.+||+.++ +.+.++... ..+.+..+.+. |. +.+++.+. ..+-|.++|+.+++..+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5889999998 777655321 23468888887 22 34445444 46689999999887665542 1
Q ss_pred C--------------CCCeEEEEEccC----CCEEEEeC-CeEEEEECCC-----Cc---eeeEeecCC---CCeEEEEE
Q 006808 158 S--------------TKGISCMAVSSD----GKMLATAA-GQLKTFNCSD-----HK---KMQKFSGHP---GAVRFMTF 207 (630)
Q Consensus 158 ~--------------~~~v~~l~~~p~----~~~l~~~~-g~i~lwd~~~-----~~---~~~~~~~h~---~~v~~l~~ 207 (630)
. ...+..|+++|+ ++.|.... ..-++|.+.+ .. .++.+ |.. .....+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEE
Confidence 1 136788999997 77777665 4444444422 11 12222 222 23345566
Q ss_pred e-eCCcEEEEEeeCCCeEEEEEcCC
Q 006808 208 S-DNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 208 s-p~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
. .+|..+++- .....|..|+..+
T Consensus 283 D~~~G~ly~~~-~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAE-ANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEE-SSSSEEEEEETTS
T ss_pred eCCCCeEEEEe-ccCCeEEEEeCCC
Confidence 5 566555544 4688999999876
No 358
>3s6n_2 SurviVal of motor neuron protein-interacting PROT; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_A
Probab=70.02 E-value=9.6 Score=35.50 Aligned_cols=60 Identities=17% Similarity=0.352 Sum_probs=43.2
Q ss_pred HHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccccCCCChhHHHHHHHH
Q 006808 495 RATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYK 557 (630)
Q Consensus 495 ~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l~~~l~~L~~ 557 (630)
-.++.+|+...+..||++++. |.........+..||.+||..-...|. ++....|+.|-+
T Consensus 180 l~~l~~ld~~~v~~LL~~~~~-wl~~~~~~~~~~~WlyaLLa~Ld~pL~--~~~~s~LR~LaR 239 (280)
T 3s6n_2 180 LSIVSRMNQATVTSVLEYLSN-WFGERDFTPELGRWLYALLACLEKPLL--PEAHSLIRQLAR 239 (280)
T ss_dssp HHHHTTSCHHHHHHHHHHHHH-GGGTSCCCHHHHHHHHHHHHHCCSSCC--HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHH
Confidence 345789999999999999996 544455677888999999997666552 344444444433
No 359
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=66.15 E-value=12 Score=39.29 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=17.4
Q ss_pred hHHHHHHhc-----cChhhHHHHHHHHHHHHhcCC
Q 006808 492 KKMRATILS-----LSPTNACKLLEVLVDLWQSRS 521 (630)
Q Consensus 492 ~~i~~tv~~-----l~~~~~~~lL~~l~~~~~~~~ 521 (630)
..|...++- +++..+..++.||......+|
T Consensus 136 ~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~ 170 (649)
T 3tj1_A 136 FLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIP 170 (649)
T ss_dssp HHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccH
Confidence 345544444 566777777777775444444
No 360
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=62.45 E-value=11 Score=39.76 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHh
Q 006808 504 TNACKLLEVLVDLWQ 518 (630)
Q Consensus 504 ~~~~~lL~~l~~~~~ 518 (630)
.|+...|.-|+..+.
T Consensus 171 ~yl~~vl~mLV~~F~ 185 (649)
T 3tj1_A 171 KWWQDVSMILVSCFI 185 (649)
T ss_dssp GGHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcc
Confidence 667777777666654
No 361
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=56.01 E-value=22 Score=29.39 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=40.8
Q ss_pred cccccCChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHHH
Q 006808 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYK--GKNILQWIYFILVN 537 (630)
Q Consensus 484 ~~~~~~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~--~~~~~~wl~~ll~~ 537 (630)
.++..+....|..+|.+|+..+.-.|+++|-+.+. .|.. ...++.|-..++..
T Consensus 81 ~VL~siK~sdI~~~v~~L~~e~~D~LMKYiYkGm~-~~~~~~~~~LL~WHEKl~~~ 135 (151)
T 1k8k_G 81 KVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFE-SPSDNSSAVLLQWHEKALAA 135 (151)
T ss_dssp HHHHHSCGGGHHHHHHTSCHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHhChhhhhHHHHHHHHhhc-CcCCCcchHHHHHHHHHHHh
Confidence 46677777899999999999999999999998887 5543 35566665555543
No 362
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=55.59 E-value=19 Score=29.77 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=43.6
Q ss_pred cccccCChhHHHHHHhccChhhHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHhc
Q 006808 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRS--YKGKNILQWIYFILVNHG 539 (630)
Q Consensus 484 ~~~~~~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~--~~~~~~~~wl~~ll~~h~ 539 (630)
.++..+....|..+|.+|+..+.-.|+++|-+.+. .| .....++.|-..++..-|
T Consensus 82 ~vL~siK~sdI~~~v~~L~~~~~D~LMKYiYkGm~-~~~~~~~~~LL~WHEKl~e~~G 138 (152)
T 3dwl_G 82 DVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLA-NPQAYNSSVLLNWHEKVVEISG 138 (152)
T ss_dssp HHHHTSCGGGHHHHHHHSCHHHHHHHHHHHHHHTT-C----CCSHHHHHHHHHHHTTC
T ss_pred HHHHHccHHHHHHHHHHhCHHHHHHHHHHHHHhcc-CccccccHHHHHHHHHHHHHcC
Confidence 46777788899999999999999999999998887 44 457778888777766533
No 363
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=55.26 E-value=1.8e+02 Score=29.34 Aligned_cols=27 Identities=15% Similarity=0.018 Sum_probs=20.4
Q ss_pred eEeEECCCCC-EEEEeeCCCcEEEEECC
Q 006808 9 ILTSFSPALD-YFAICSGDARIKIWDTL 35 (630)
Q Consensus 9 ~~~~fs~dg~-~las~s~dg~i~vwd~~ 35 (630)
+.++|.|||+ .|+++...|.|++++..
T Consensus 17 ~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 17 VGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp EEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred eEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3569999996 45556678999999753
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.18 E-value=1.5e+02 Score=28.32 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=102.1
Q ss_pred CcEEEEEeCCCeEEEE---EccC------CeeeEEccC-CCCCCEEEEEEec---CCCEEEEEeCCCcEEEEeCCCCce-
Q 006808 86 SSLLVLGTGGGDVLAL---AVSA------GQLKWRLSD-CHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTGSL- 151 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iw---d~~~------~~~~~~~~~-~h~~~v~~~~~s~---~g~~l~s~~~dg~v~iwd~~~~~~- 151 (630)
...|++.+..|.++.. ++.. |..+..+.. .....|.++..-+ +..+++.++.+|.++...+.....
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 5567888888886544 4432 222212211 2234566654443 467899999999999988654221
Q ss_pred ------eEEeecCCCCeEEEEE-ccCCCEEEEeC-CeEEEEECC--CCc---------eeeEeecCCCCeEEEEEeeCCc
Q 006808 152 ------LGKFRASTKGISCMAV-SSDGKMLATAA-GQLKTFNCS--DHK---------KMQKFSGHPGAVRFMTFSDNGK 212 (630)
Q Consensus 152 ------~~~~~~~~~~v~~l~~-~p~~~~l~~~~-g~i~lwd~~--~~~---------~~~~~~~h~~~v~~l~~sp~~~ 212 (630)
.-.++. ...+..+.. +.+...++... |.+..+... .-. ....+. ....|.++...+.+.
T Consensus 133 ~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~ 210 (327)
T 3uc1_A 133 RSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGT 210 (327)
T ss_dssp CSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTC
T ss_pred ccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCC
Confidence 112333 234444443 34444555555 887777765 211 111122 234566666555566
Q ss_pred EEEEEeeCCCeEEEEEcCCCcccc----ceeeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 213 YVLSSAVGERYIALWRTDGVKKQS----ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+++..+ ..|.++.-.+..-.... ......+.. ....+.+... .+...++..+.+|.+.-++....
T Consensus 211 ~ll~~T-~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~------~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 211 YLLVAT-SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIV------DDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp EEEEEE-TTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEE------CTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EEEEEe-CCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEe------CCCccEEEEcCCCeEEEEehhhc
Confidence 777776 68998888765432210 011122222 3344444333 23456777788888877776443
No 365
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=55.14 E-value=2.5 Score=40.83 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=13.2
Q ss_pred ChhHHHHHHhccCh------hhHHHHHHHHHH
Q 006808 490 PVKKMRATILSLSP------TNACKLLEVLVD 515 (630)
Q Consensus 490 ~~~~i~~tv~~l~~------~~~~~lL~~l~~ 515 (630)
....|...|.+.|. ..+.+=++|+..
T Consensus 162 S~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~ 193 (335)
T 4fp9_B 162 TVQQVTKILHSCPSVLREDLGQLEYKFQYAYF 193 (335)
T ss_dssp CHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCChhhhCCHHHHHHHHHHHHH
Confidence 44555555555554 334455555543
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=54.90 E-value=1.6e+02 Score=28.65 Aligned_cols=53 Identities=17% Similarity=0.112 Sum_probs=28.5
Q ss_pred CcEEEEEeCCCeEEEEEccC-Ce-eeEEccCCCCCCEEEEEEec-CCCEEEEEeCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSA-GQ-LKWRLSDCHPGGVSAISFAT-HGSCIYSAGADG 139 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~-~~-~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg 139 (630)
...|++|+..| +.+++... +. ............|.+|++.| +...+++++..|
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 44678888877 55555433 22 11110011235699999998 334455555554
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.24 E-value=13 Score=43.06 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=31.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEec
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~ 44 (630)
++++..++..++++-+.|+++|||++.+++++.+..
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 566777888999999999999999999999988754
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=52.95 E-value=49 Score=34.35 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=44.3
Q ss_pred CeEEEEEccCCCEEEEeC--------------CeEEEEECCCCceeeEeecC-CCCeEEEEEeeCCcEEEEEeeC
Q 006808 161 GISCMAVSSDGKMLATAA--------------GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--------------g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
....|.|.++|.+.++.. +.++.++..+++....+.+. ...++.++|+||++.|+++-..
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 456799999998888543 16777787778765555543 3568999999999998887643
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.33 E-value=65 Score=33.72 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=12.7
Q ss_pred CEEEEEEecCCCEEEEE
Q 006808 119 GVSAISFATHGSCIYSA 135 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~ 135 (630)
..-.|+|+|.|+++++-
T Consensus 477 ~PDNL~fd~~G~LwI~e 493 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILT 493 (592)
T ss_dssp CEEEEEECTTCCEEEEE
T ss_pred CCcceEECCCCCEEEEe
Confidence 45778999999865554
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.83 E-value=76 Score=32.94 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=43.6
Q ss_pred CCEEEEEEecCCCEEEEEeC------------CCcEEEEeCCCCceeEEeecC-CCCeEEEEEccCCCEEEEeC
Q 006808 118 GGVSAISFATHGSCIYSAGA------------DGMVCEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA 178 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~------------dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~ 178 (630)
.....|.|.++|.+.++... ...|..++..+++....+... ...++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45788999999987664321 125667777778776666543 34789999999999887753
No 371
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=48.09 E-value=43 Score=35.09 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=42.4
Q ss_pred eEEEEEccCCCEEEEeCC--------------eEEEEECCCCceeeEeecCC-CCeEEEEEeeCCcEEEEEe
Q 006808 162 ISCMAVSSDGKMLATAAG--------------QLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~g--------------~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~~~~ 218 (630)
.-.|+|+|.|.++++-.+ .+.+.+..+++..+.+.++. ..++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 356899999997777541 35666777777666666553 5799999999999887754
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=40.60 E-value=2.6e+02 Score=27.09 Aligned_cols=193 Identities=15% Similarity=0.187 Sum_probs=96.2
Q ss_pred CcEEEEEeCCCeEEEEEccCC----------e-eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-c---
Q 006808 86 SSLLVLGTGGGDVLALAVSAG----------Q-LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-S--- 150 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~----------~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~--- 150 (630)
....++-+.+|.|+.|-.... . ....+..-....+..++++....+.+.-..||.|+.|=.... +
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 445567788999999964321 0 111111112234566677776777777788999999954321 0
Q ss_pred -------eeEEeec-CCCCeEEEEEccCCCEEEEeCCeEEEEECCC-Cc----------eeeEeec-CCCCeEEEEEeeC
Q 006808 151 -------LLGKFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSD-HK----------KMQKFSG-HPGAVRFMTFSDN 210 (630)
Q Consensus 151 -------~~~~~~~-~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~-~~----------~~~~~~~-h~~~v~~l~~sp~ 210 (630)
....+.. ....|..++.......+++..|.|+.|-... ++ ....+.. ....|..++....
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g 221 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG 221 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCS
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCC
Confidence 0111111 1225666665544333333348888886432 11 0111111 1234666655432
Q ss_pred CcEEEEEeeCCCeEEEEEcCCCcccc------ceeeeeec--CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 211 GKYVLSSAVGERYIALWRTDGVKKQS------ASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 211 ~~~l~~~~~~d~~i~vwd~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..+.++.. .++.|+.|-........ ......+. ....+..+.+ ...+.++.+.+|.|+.|-..
T Consensus 222 ~~~t~~l~-~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--------G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 222 DAQTLCLT-DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--------GSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp SCEEEEEE-TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--------ETTEEEEEETTSCEEEEECC
T ss_pred CcEEEEEc-cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--------CCCEEEEEeCCCeEEEEeCC
Confidence 23444444 58999999754321110 00000111 1112333332 23566677889999999765
Q ss_pred Ccccc
Q 006808 283 NIEEL 287 (630)
Q Consensus 283 ~~~~~ 287 (630)
..-++
T Consensus 293 ~~GqL 297 (389)
T 3kci_A 293 DYHRL 297 (389)
T ss_dssp GGGTT
T ss_pred CCCCC
Confidence 44333
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=39.11 E-value=43 Score=35.79 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=29.6
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 120 v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
|.++.+ +..++++-+.|+++|+|++.+++++.+...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555544 467999999999999999999998887654
No 374
>1ybk_A Tetrabrachion; right hand coiled coil, protein binding; HET: BEQ; 1.45A {Staphylothermus marinus} PDB: 1fe6_A
Probab=37.24 E-value=56 Score=19.84 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhhHhHHhccc-hHHHHHHH
Q 006808 551 MLSSLYKITVSREAAFQSLLRLSG-RLQLTMAQ 582 (630)
Q Consensus 551 ~l~~L~~~~~~~~~~~~~l~~l~g-~l~~~~~~ 582 (630)
.+-.|-..+..|++.++.|..|.. ||+|+++.
T Consensus 11 ivyrltviiddryeslknlitlradrlemiind 43 (52)
T 1ybk_A 11 IVYRLTVIIDDRYESLKNLITLRADRLEMIIND 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEccHHHHHHHHHhhhhhhhhhhhcC
Confidence 445677788999999999998876 88888763
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.12 E-value=33 Score=36.71 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=26.3
Q ss_pred CCCCEEEEeeCCCcEEEEECCCCcEEEEec
Q 006808 15 PALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (630)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~~~~~~~~~~ 44 (630)
.+..++++-+.|+++|+|++.+++++.+..
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 346799999999999999999999887654
No 376
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=35.58 E-value=22 Score=27.43 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=29.4
Q ss_pred hh-HHHHHHhccChhhHHHHHHHHHHHHhcCCCCcc
Q 006808 491 VK-KMRATILSLSPTNACKLLEVLVDLWQSRSYKGK 525 (630)
Q Consensus 491 ~~-~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~ 525 (630)
.. .|..++.+||+.+...||+.+-.....+|.+..
T Consensus 38 p~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~a~ 73 (109)
T 2l9b_A 38 PAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDAA 73 (109)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 45 899999999999999999999877777776443
No 377
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=30.96 E-value=10 Score=40.32 Aligned_cols=15 Identities=13% Similarity=-0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 006808 550 PMLSSLYKITVSREA 564 (630)
Q Consensus 550 ~~l~~L~~~~~~~~~ 564 (630)
..|..|...+.+++.
T Consensus 619 ~QL~sl~~tl~e~In 633 (956)
T 4aco_A 619 HQLNLFKITLDERIK 633 (956)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHhc
Confidence 345555555555543
No 378
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=30.18 E-value=5.4e+02 Score=27.54 Aligned_cols=188 Identities=9% Similarity=-0.056 Sum_probs=93.7
Q ss_pred cEEEEEeCCCe----EEEEEccCCeeeEEccCC-CCC------CEEEEEEecCCCEEEEEe-----------CCCcEEEE
Q 006808 87 SLLVLGTGGGD----VLALAVSAGQLKWRLSDC-HPG------GVSAISFATHGSCIYSAG-----------ADGMVCEI 144 (630)
Q Consensus 87 ~~l~~~~~~g~----v~iwd~~~~~~~~~~~~~-h~~------~v~~~~~s~~g~~l~s~~-----------~dg~v~iw 144 (630)
..++.-+.+|. ++++|+.+++.+..-+.. -.. ....++|..+. .++.+. .-..|+.|
T Consensus 143 ~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 221 (711)
T 4hvt_A 143 RYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEITSSLYPNSLYIW 221 (711)
T ss_dssp EEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBCTTSSBCEEEEE
T ss_pred EEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcCcCCCCCEEEEE
Confidence 34455555554 899999999876322110 000 11344776444 444432 22468888
Q ss_pred eCCCCc--eeEEeecCCCCe-EEEEEccCCCE-----EEEeC-----CeEEEEECCC--CceeeEeecCCCCeEEEEEee
Q 006808 145 DPLTGS--LLGKFRASTKGI-SCMAVSSDGKM-----LATAA-----GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSD 209 (630)
Q Consensus 145 d~~~~~--~~~~~~~~~~~v-~~l~~~p~~~~-----l~~~~-----g~i~lwd~~~--~~~~~~~~~h~~~v~~l~~sp 209 (630)
.+-+.. -...|......+ .+...++++.+ +++.+ ..+++.+... ++ +..+..... ..+..+.
T Consensus 222 ~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~~~~~~~ 298 (711)
T 4hvt_A 222 KRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD--ATLQGSF 298 (711)
T ss_dssp ETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT--CEEEEEE
T ss_pred ECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc--ceEeeeE
Confidence 876653 233455444433 34455666652 33322 4667777653 33 223322221 1233455
Q ss_pred CCcEEEEEee---------CCCeEEEEEcCCCcc-----ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-
Q 006808 210 NGKYVLSSAV---------GERYIALWRTDGVKK-----QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG- 274 (630)
Q Consensus 210 ~~~~l~~~~~---------~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg- 274 (630)
++.+++.... ..+.|.+.++..... .....++ .......+..+.+. . +..+++...+|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~-~~l~~~~~~~~~ 371 (711)
T 4hvt_A 299 KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTT-----K-DRVFLATYDNVV 371 (711)
T ss_dssp TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEEC-----S-SCEEEEEEETTE
T ss_pred CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEE-----C-CEEEEEEEECCE
Confidence 6665553321 355788888876421 1111112 22334444444443 3 46677777777
Q ss_pred -cEEEEEcCCcc
Q 006808 275 -VCYIWYGQNIE 285 (630)
Q Consensus 275 -~i~iwd~~~~~ 285 (630)
.|+++++.++.
T Consensus 372 ~~l~~~~~~~g~ 383 (711)
T 4hvt_A 372 AKVVTFTLENEQ 383 (711)
T ss_dssp EEEEEECEETTE
T ss_pred EEEEEEECCCCc
Confidence 46677765553
No 379
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=27.29 E-value=16 Score=33.86 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=3.9
Q ss_pred cEEEeecC
Q 006808 352 DINLNCSQ 359 (630)
Q Consensus 352 v~~~~~s~ 359 (630)
.+.+.|.+
T Consensus 104 ~i~F~F~~ 111 (264)
T 2zd7_A 104 SITFHFHG 111 (264)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 34455555
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=25.54 E-value=6.4e+02 Score=26.92 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=22.5
Q ss_pred EECCCCCEEEEee-----CCCcEEEEECCCCcEE
Q 006808 12 SFSPALDYFAICS-----GDARIKIWDTLKGQVQ 40 (630)
Q Consensus 12 ~fs~dg~~las~s-----~dg~i~vwd~~~~~~~ 40 (630)
+++|++++++.+- .-..++++|+.+++.+
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~ 169 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFV 169 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEEC
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcC
Confidence 4899999887642 2346999999999876
No 381
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.34 E-value=2.5e+02 Score=21.51 Aligned_cols=81 Identities=9% Similarity=0.072 Sum_probs=43.8
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+.+.+.-..||.+.+|+...+..++.........-..+.+..+|++++.- .++.+ +|...+.. . ...+.+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t~~-------~-~~~~~~ 93 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITD-DRLNT-VFVSNTVG-------Q-EGDYVL 93 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEEC-TTSCE-EEECSCCC-------S-SSCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEEC-CCCCE-EEECCCcC-------C-CCCEEE
Confidence 44556667788888887644555554432222223456777788766553 34443 67754321 0 112445
Q ss_pred EEccCCCEEEE
Q 006808 166 AVSSDGKMLAT 176 (630)
Q Consensus 166 ~~~p~~~~l~~ 176 (630)
.+.++|.+++.
T Consensus 94 ~L~~dGnlvly 104 (113)
T 3mez_B 94 ILQINGQAVVY 104 (113)
T ss_dssp EECTTSCEEEE
T ss_pred EEcCCceEEEe
Confidence 66667766554
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=21.45 E-value=5e+02 Score=24.18 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=97.3
Q ss_pred CcEEEEEeCCCeEEEEEc---cC------CeeeEEccC-CCCCCEEEEEEe---cCCCEEEEEeCCCcEEEEeCCCC---
Q 006808 86 SSLLVLGTGGGDVLALAV---SA------GQLKWRLSD-CHPGGVSAISFA---THGSCIYSAGADGMVCEIDPLTG--- 149 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~---~~------~~~~~~~~~-~h~~~v~~~~~s---~~g~~l~s~~~dg~v~iwd~~~~--- 149 (630)
...|+..+..|.++-+.. .. |..+..+.. .....|.++..- .++.+++.++..|.++...+...
T Consensus 53 ~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~ 132 (307)
T 1zi0_A 53 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 132 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTC
T ss_pred CCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcc
Confidence 556888899998665554 22 222211111 223456666442 34567889999999999976422
Q ss_pred ----ceeEEeecCCCCeEEEEE-ccCCCEEEEeC-CeEEEEECCCCc---------eeeEeecCCCCeEEEEEeeCCcEE
Q 006808 150 ----SLLGKFRASTKGISCMAV-SSDGKMLATAA-GQLKTFNCSDHK---------KMQKFSGHPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 150 ----~~~~~~~~~~~~v~~l~~-~p~~~~l~~~~-g~i~lwd~~~~~---------~~~~~~~h~~~v~~l~~sp~~~~l 214 (630)
...-.+... ..+..+.. ..+..+++..+ |.+..++...-. ....+. ....|.++...+++..+
T Consensus 133 ~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~l 210 (307)
T 1zi0_A 133 RTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAI 210 (307)
T ss_dssp CTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEE
T ss_pred ccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEE
Confidence 111123333 44444443 44444555555 777777653211 111222 23456665544455566
Q ss_pred EEEeeCCCeEEEEEcCCCcccc----ceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 215 LSSAVGERYIALWRTDGVKKQS----ASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
++.+ ..|..+-.++..-.... ......+. .....+...... +...|+..+.+|.+.-+....
T Consensus 211 l~~T-~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~------~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 211 LTAT-QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVD------DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEE-TTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEEC------TTCEEEEEESSCCEEEEEGGG
T ss_pred EEEE-cCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeC------CCceEEEEcCCCcEEEEeccc
Confidence 6666 68888888774322110 01111222 223444444332 335566667777776666544
No 383
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.26 E-value=2e+02 Score=29.32 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCeEE-EEEccCCe-------eeEEccC-CCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 006808 86 SSLLVLGTGGGDVL-ALAVSAGQ-------LKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCE 143 (630)
Q Consensus 86 ~~~l~~~~~~g~v~-iwd~~~~~-------~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~v~i 143 (630)
-..+++|+.+|.|. +.....+. .+..+.. ....+|..+.+++++.+|+.++.++.+++
T Consensus 421 ~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 421 YDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 46788999999854 43322221 1112221 23578999999999999999988876554
Done!