BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006811
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 107/453 (23%), Positives = 159/453 (35%), Gaps = 133/453 (29%)
Query: 158 DGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDT----EFGLMGMA 213
DGS R F +EG + + T PE GE + P+ D+ V E GL+ +A
Sbjct: 24 DGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDIHKLVQSGIKGGDERGLLSLA 75
Query: 214 FHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEY 273
FHPN+ KNG+ + S+ ++ +W P + V EY
Sbjct: 76 FHPNYKKNGKLYVSYTTNQERW------------------------AIGPHDHILRVVEY 111
Query: 274 TVNGTASEPSLAKRAKPSEV-----RRIFTMGLSFNGHHGGQLLFGPTXXXXXXXXXXXX 328
TV+ R P +V R + H GGQLLFGP
Sbjct: 112 TVS----------RKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMI 161
Query: 329 XTADPYNFSQNKKSLLGKITRLDVD----NIPSAAEIEKLGLWGSYSIPKDNPFSEDSGL 384
T D G + RLDVD N+P YSIP+ NP +
Sbjct: 162 -TLDDMEEMDGLSDFTGSVLRLDVDTDMCNVP-------------YSIPRSNPHFNSTNQ 207
Query: 385 QPEIWALGLRNPWRCSFDSDRPSY-----FMCADVGQDVYEEVDI--ITRGGNYGWRLYE 437
PE++A GL +P RC+ D +C+D I I +G +Y
Sbjct: 208 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDY------ 261
Query: 438 GPYLFTPLETPGGITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGR 497
E+ + S + + GG+ YR ++G
Sbjct: 262 --------ESEPSLLEFKPFS------------------NGPLVGGFVYRGCQSERLYGS 295
Query: 498 YLYADLYATALWAASESPENSGNF-TTSKIPFSCARDSPIQCKVLPGNDLPSL-GYIYSF 555
Y++ D +GNF T + P + C G+ G+I F
Sbjct: 296 YVFGD--------------RNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGF 341
Query: 556 GEDNRKDIFILTSD---------GVYRVVRPSR 579
GED +++IL+S +Y++V P R
Sbjct: 342 GEDELGEVYILSSSKSMTQTHNGKLYKIVDPKR 374
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 107/453 (23%), Positives = 159/453 (35%), Gaps = 133/453 (29%)
Query: 158 DGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDT----EFGLMGMA 213
DGS R F +EG + + T PE GE + P+ D+ V E GL+ +A
Sbjct: 24 DGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDIHKLVQSGIKGGDERGLLSLA 75
Query: 214 FHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEY 273
FHPN+ KNG+ + S+ ++ +W P + V EY
Sbjct: 76 FHPNYKKNGKLYVSYTTNQERW------------------------AIGPHDHILRVVEY 111
Query: 274 TVNGTASEPSLAKRAKPSEV-----RRIFTMGLSFNGHHGGQLLFGPTXXXXXXXXXXXX 328
TV+ R P +V R + H GGQLLFGP
Sbjct: 112 TVS----------RKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMI 161
Query: 329 XTADPYNFSQNKKSLLGKITRLDVD----NIPSAAEIEKLGLWGSYSIPKDNPFSEDSGL 384
T D G + RLDVD N+P YSIP+ NP +
Sbjct: 162 -TLDDMEEMDGLSDFTGSVLRLDVDTDMCNVP-------------YSIPRSNPHFNSTNQ 207
Query: 385 QPEIWALGLRNPWRCSFDSDRPSY-----FMCADVGQDVYEEVDI--ITRGGNYGWRLYE 437
PE++A GL +P RC+ D +C+D I I +G +Y
Sbjct: 208 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDY------ 261
Query: 438 GPYLFTPLETPGGITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGR 497
E+ + S + + GG+ YR ++G
Sbjct: 262 --------ESEPSLLEFKPFS------------------NGPLVGGFVYRGCQSERLYGS 295
Query: 498 YLYADLYATALWAASESPENSGNF-TTSKIPFSCARDSPIQCKVLPGNDLPSL-GYIYSF 555
Y++ D +GNF T + P + C G+ G+I F
Sbjct: 296 YVFGD--------------RNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGF 341
Query: 556 GEDNRKDIFILTSD---------GVYRVVRPSR 579
GED +++IL+S +Y++V P R
Sbjct: 342 GEDELGEVYILSSSKSMTQTHNGKLYKIVDPKR 374
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 107/453 (23%), Positives = 159/453 (35%), Gaps = 133/453 (29%)
Query: 158 DGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDT----EFGLMGMA 213
DGS R F +EG + + T PE GE + P+ D+ V E GL+ +A
Sbjct: 24 DGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDIHKLVQSGIKGGDERGLLSLA 75
Query: 214 FHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEY 273
FHPN+ KNG+ + S+ ++ +W P + V EY
Sbjct: 76 FHPNYKKNGKLYVSYTTNQERW------------------------AIGPHDHILRVVEY 111
Query: 274 TVNGTASEPSLAKRAKPSEV-----RRIFTMGLSFNGHHGGQLLFGPTXXXXXXXXXXXX 328
TV+ R P +V R + H GGQLLFGP
Sbjct: 112 TVS----------RKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMI 161
Query: 329 XTADPYNFSQNKKSLLGKITRLDVD----NIPSAAEIEKLGLWGSYSIPKDNPFSEDSGL 384
T D G + RLDVD N+P YSIP+ NP +
Sbjct: 162 -TLDDMEEMDGLSDFTGSVLRLDVDTDMCNVP-------------YSIPRSNPHFNSTNQ 207
Query: 385 QPEIWALGLRNPWRCSFDSDRPSY-----FMCADVGQDVYEEVDI--ITRGGNYGWRLYE 437
PE++A GL +P RC+ D +C+D I I +G +Y
Sbjct: 208 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDY------ 261
Query: 438 GPYLFTPLETPGGITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGR 497
E+ + S + + GG+ YR ++G
Sbjct: 262 --------ESEPSLLEFKPFS------------------NGPLVGGFVYRGCQSERLYGS 295
Query: 498 YLYADLYATALWAASESPENSGNF-TTSKIPFSCARDSPIQCKVLPGNDLPSL-GYIYSF 555
Y++ D +GNF T + P + C G+ G+I F
Sbjct: 296 YVFGD--------------RNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGF 341
Query: 556 GEDNRKDIFILTSD---------GVYRVVRPSR 579
GED +++IL+S +Y++V P R
Sbjct: 342 GEDELGEVYILSSSKSMTQTHNGKLYKIVDPKR 374
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 107/453 (23%), Positives = 159/453 (35%), Gaps = 133/453 (29%)
Query: 158 DGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDT----EFGLMGMA 213
DGS R F +EG + + T PE GE + P+ D+ V E GL+ +A
Sbjct: 45 DGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDIHKLVQSGIKGGDERGLLSLA 96
Query: 214 FHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEY 273
FHPN+ KNG+ + S+ ++ +W P + V EY
Sbjct: 97 FHPNYKKNGKLYVSYTTNQERW------------------------AIGPHDHILRVVEY 132
Query: 274 TVNGTASEPSLAKRAKPSEV-----RRIFTMGLSFNGHHGGQLLFGPTXXXXXXXXXXXX 328
TV+ R P +V R + H GGQLLFGP
Sbjct: 133 TVS----------RKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMI 182
Query: 329 XTADPYNFSQNKKSLLGKITRLDVD----NIPSAAEIEKLGLWGSYSIPKDNPFSEDSGL 384
T D G + RLDVD N+P YSIP+ NP +
Sbjct: 183 -TLDDMEEMDGLSDFTGSVLRLDVDTDMCNVP-------------YSIPRSNPHFNSTNQ 228
Query: 385 QPEIWALGLRNPWRCSFDSDRPSY-----FMCADVGQDVYEEVDI--ITRGGNYGWRLYE 437
PE++A GL +P RC+ D +C+D I I +G +Y
Sbjct: 229 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDY------ 282
Query: 438 GPYLFTPLETPGGITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGR 497
E+ + S + + GG+ YR ++G
Sbjct: 283 --------ESEPSLLEFKPFS------------------NGPLVGGFVYRGCQSERLYGS 316
Query: 498 YLYADLYATALWAASESPENSGNF-TTSKIPFSCARDSPIQCKVLPGNDLPSL-GYIYSF 555
Y++ D +GNF T + P + C G+ G+I F
Sbjct: 317 YVFGD--------------RNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGF 362
Query: 556 GEDNRKDIFILTSD---------GVYRVVRPSR 579
GED +++IL+S +Y++V P R
Sbjct: 363 GEDELGEVYILSSSKSMTQTHNGKLYKIVDPKR 395
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 108/453 (23%), Positives = 160/453 (35%), Gaps = 133/453 (29%)
Query: 158 DGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDT----EFGLMGMA 213
DGS R F +EG + + T PE GE + P+ D+ V E GL+ +A
Sbjct: 45 DGSQRLFILEKEGYVKILT-PE---GEIFK----EPYLDIHKLVQSGIKGGDERGLLSLA 96
Query: 214 FHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEY 273
FHPN+ KNG+ + S+ ++ +W P + V EY
Sbjct: 97 FHPNYKKNGKLYVSYTTNQERW------------------------AIGPHDHILRVVEY 132
Query: 274 TVNGTASEPSLAKRAKPSEV-----RRIFTMGLSFNGHHGGQLLFGPTXXXXXXXXXXXX 328
TV+ R P +V R + H GGQLLFGP
Sbjct: 133 TVS----------RKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGXI 182
Query: 329 XTADPYNFSQNKKSLLGKITRLDVD----NIPSAAEIEKLGLWGSYSIPKDNPFSEDSGL 384
T D G + RLDVD N+P YSIP+ NP +
Sbjct: 183 -TLDDXEEXDGLSDFTGSVLRLDVDTDXCNVP-------------YSIPRSNPHFNSTNQ 228
Query: 385 QPEIWALGLRNPWRCSFDSDRPSY-----FMCADVGQDVYEEVDI--ITRGGNYGWRLYE 437
PE++A GL +P RC+ D +C+D I I +G +Y
Sbjct: 229 PPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDY------ 282
Query: 438 GPYLFTPLETPGGITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGR 497
E+ + S + + GG+ YR ++G
Sbjct: 283 --------ESEPSLLEFKPFS------------------NGPLVGGFVYRGCQSERLYGS 316
Query: 498 YLYADLYATALWAASESPENSGNF-TTSKIPFSCARDSPIQCKVLPGNDLPSL-GYIYSF 555
Y++ D +GNF T + P + C G+ G+I F
Sbjct: 317 YVFGD--------------RNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGF 362
Query: 556 GEDNRKDIFILTSD---------GVYRVVRPSR 579
GED +++IL+S +Y++V P R
Sbjct: 363 GEDELGEVYILSSSKSXTQTHNGKLYKIVDPKR 395
>pdb|3A9G|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Apo-Form
pdb|3A9H|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Holo-Form
Length = 354
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 60/134 (44%), Gaps = 29/134 (21%)
Query: 306 HHGGQLLFGPTXXXXXXXXXXXXXTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLG 365
H+GG++ FGP ADP +Q+ SL GKI R+D + P
Sbjct: 135 HNGGRIRFGPDGMLYITTGD----AADP-RLAQDLSSLAGKILRVDEEGRP--------- 180
Query: 366 LWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCA-DVGQDVYEEVDI 424
P DNPF IW+ G RNP D R S M A + G ++EV+I
Sbjct: 181 -------PADNPFPNSP-----IWSYGHRNP--QGIDWHRASGVMVATEHGPVGHDEVNI 226
Query: 425 ITRGGNYGWRLYEG 438
I +GGNYGW L G
Sbjct: 227 ILKGGNYGWPLATG 240
>pdb|1CRU|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqq And
Methylhydrazine
pdb|1CRU|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqq And
Methylhydrazine
pdb|1QBI|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus
pdb|1QBI|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus
pdb|1C9U|A Chain A, Crystal Structure Of The Soluble Quinoprotein Glucose
Dehydrogenase In Complex With Pqq
pdb|1C9U|B Chain B, Crystal Structure Of The Soluble Quinoprotein Glucose
Dehydrogenase In Complex With Pqq
pdb|1CQ1|A Chain A, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqqh2 And
Glucose
pdb|1CQ1|B Chain B, Soluble Quinoprotein Glucose Dehydrogenase From
Acinetobacter Calcoaceticus In Complex With Pqqh2 And
Glucose
Length = 454
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 109/293 (37%), Gaps = 78/293 (26%)
Query: 162 RAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEV-----HFDTEFGLMGMAFHP 216
A + +IWL E+ G+ + ++ S +V D + GL+G AFHP
Sbjct: 30 HALLWGPDNQIWLT---ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP 86
Query: 217 NFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVN 276
+F N + S K P + N QT++ YT N
Sbjct: 87 DFKNNPYIYIS---GTFKNPKSTDKELPN---------------------QTIIRRYTYN 122
Query: 277 GTASEPSLAKRAKPSEVRRIFTMGL-SFNGHHGGQLLFGPTXXXXXXXXXXXXXTADPYN 335
S KP ++ GL S H G+L+ GP Y
Sbjct: 123 K-----STDTLEKPVDL----LAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQL-AYL 172
Query: 336 FSQNK---------------KSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSE 380
F N+ + +GK+ RL++D SIPKDNP
Sbjct: 173 FLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDG----------------SIPKDNP--S 214
Query: 381 DSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGW 433
+G+ I+ LG RNP +F + + ++ G + +E+++I +GGNYGW
Sbjct: 215 FNGVVSHIYTLGHRNPQGLAFTPN--GKLLQSEQGPNSDDEINLIVKGGNYGW 265
>pdb|2ISM|A Chain A, Crystal Structure Of The Putative Oxidoreductase (Glucose
Dehydrogenase) (Ttha0570) From Thermus Theromophilus Hb8
pdb|2ISM|B Chain B, Crystal Structure Of The Putative Oxidoreductase (Glucose
Dehydrogenase) (Ttha0570) From Thermus Theromophilus Hb8
Length = 352
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 74/250 (29%)
Query: 192 SPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCD 251
S +A+L+ V+ E GL+G+A HP F + +A R +
Sbjct: 62 STYAELS--VYHRGESGLLGLALHPRFPQEPYVYAY-------------RTVAEGGLRNQ 106
Query: 252 PSKLR--GDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFNGHHGG 309
+LR G+ G V+ ++G + P GL H GG
Sbjct: 107 VVRLRHLGERG--------VLDRVVLDGIPARPH----------------GL----HSGG 138
Query: 310 QLLFGPTXXXXXXXXXXXXXTADPYN--FSQNKKSLLGKITRLDVDNIPSAAEIEKLGLW 367
++ FGP T + Y +Q+ SL GKI RL + P+
Sbjct: 139 RIAFGPDGMLYVT-------TGEVYERELAQDLASLGGKILRLTPEGEPAPG-------- 183
Query: 368 GSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCAD--VGQDVY--EEVD 423
NPF G +PE+++LG RNP ++ F G+ Y +EV+
Sbjct: 184 --------NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVN 235
Query: 424 IITRGGNYGW 433
+I GGNYGW
Sbjct: 236 LIVPGGNYGW 245
>pdb|2G8S|A Chain A, Crystal Structure Of The Soluble Aldose Sugar
Dehydrogenase (Asd) From Escherichia Coli In The
Apo-Form
pdb|2G8S|B Chain B, Crystal Structure Of The Soluble Aldose Sugar
Dehydrogenase (Asd) From Escherichia Coli In The
Apo-Form
Length = 353
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 98/246 (39%), Gaps = 60/246 (24%)
Query: 191 SSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNC 250
S+P + + D V + GL+ + P+FA++ R + S++ +V G AG ++
Sbjct: 51 SAPLSGVPD-VWAHGQGGLLDVVLAPDFAQSRRIWLSYS--EVGDDGKAGTAVGYGRLSD 107
Query: 251 DPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFNGHHGGQ 310
D SK+ ++TV R P LS H GG+
Sbjct: 108 DLSKV--------TDFRTVF----------------RQXPK---------LSTGNHFGGR 134
Query: 311 LLF-GPTXXXXXXXXXXXXXTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGS 369
L+F G TA Q+ L GK+ RL
Sbjct: 135 LVFDGKGYLFIALGENNQRPTA------QDLDKLQGKLVRLTDQG--------------- 173
Query: 370 YSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGG 429
IP DNPF ++SG++ EIW+ G+RNP + + + + G +E++I +G
Sbjct: 174 -EIPDDNPFIKESGVRAEIWSYGIRNP-QGXAXNPWSNALWLNEHGPRGGDEINIPQKGK 231
Query: 430 NYGWRL 435
NYGW L
Sbjct: 232 NYGWPL 237
>pdb|3DAS|A Chain A, Structure Of The Pqq-Bound Form Of Aldose Sugar
Dehydrogenase (Adh) From Streptomyces Coelicolor
Length = 347
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 31/158 (19%)
Query: 281 EPSLAKRAKPSEVRRIFTMGLSFNGHHGGQLLFGPTXXXXXXXXXXXXXTADPYNFSQNK 340
+PS + P V R G+ H+GG++ FGP SQ++
Sbjct: 118 KPSGEQLGAPDTVFRGIPKGVI---HNGGRIAFGPDKXLYAGTGESGDT-----GLSQDR 169
Query: 341 KSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCS 400
KSL GKI R D P+ NPF +++ G RN +
Sbjct: 170 KSLGGKILRXTPDGEPAPG----------------NPFPGSP-----VYSYGHRNVQGLA 208
Query: 401 FDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEG 438
+D D+ F ++ GQD ++E++ I G NYGW EG
Sbjct: 209 WD-DKQRLF-ASEFGQDTWDELNAIKPGDNYGWPEAEG 244
>pdb|3DR2|A Chain A, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
pdb|3DR2|B Chain B, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
Length = 305
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 113 TSKDGSVCFNGEPVTLN--NTGTPNPPQGLCLEKI----GNGSYLNMVAHPDGSNRAFFS 166
++DG++ F P L + G P P+ L + +GS L +A D N FS
Sbjct: 138 VARDGAIWFTDPPFGLRKPSQGCPADPE-LAHHSVYRLPPDGSPLQRMADLDHPNGLAFS 196
Query: 167 NQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHF 203
E ++++ PEQG G + L D HF
Sbjct: 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF 233
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 188 LDASSPFADLTDEV--HFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPG 237
+D SP TDE + +EF ++ H FA+N +++CD++ W G
Sbjct: 218 IDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 188 LDASSPFADLTDEV--HFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPG 237
+D SP TDE + +EF ++ H FA+N +++CD++ W G
Sbjct: 218 IDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 188 LDASSPFADLTDEV--HFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPG 237
+D SP TDE + +EF ++ H FA+N +++CD++ W G
Sbjct: 218 IDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 188 LDASSPFADLTDEV--HFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPG 237
+D SP TDE + +EF ++ H FA+N +++CD++ W G
Sbjct: 218 IDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 188 LDASSPFADLTDEV--HFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPG 237
+D SP TDE + +EF ++ H FA+N +++CD++ W G
Sbjct: 218 IDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 188 LDASSPFADLTDEV--HFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPG 237
+D SP TDE + +EF ++ H FA+N +++CD++ W G
Sbjct: 218 IDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269
>pdb|2W6C|X Chain X, Ache In Complex With A Bis-(-)-Nor-Meptazinol Derivative
pdb|2W9I|A Chain A, Ache In Complex With Methylene Blue
Length = 586
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 144 KIGNGSYLNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHF 203
K GNG+YL H RA SN W+ I G +E P L E+++
Sbjct: 434 KFGNGTYLYFFNH-----RA--SNLVWPEWMGVIH----GYEIEFVFGLP---LVKELNY 479
Query: 204 DTEFGLMG---MAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNG 260
E + M + FAK G + + KWP + D+N +P K+
Sbjct: 480 TAEEEALSRRIMHYWATFAKTGNPNEP-HSQESKWPLFTTKEQKFIDLNTEPMKVHQRLR 538
Query: 261 AQPCQYQTVVAEYTVNGTASEPSL 284
Q C + +N TA + L
Sbjct: 539 VQMCVFWNQFLPKLLNATACDGEL 562
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,319,322
Number of Sequences: 62578
Number of extensions: 933608
Number of successful extensions: 1723
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1676
Number of HSP's gapped (non-prelim): 52
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)