Query 006811
Match_columns 630
No_of_seqs 262 out of 1664
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 14:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03606 non_repeat_PQQ dehyd 100.0 8.5E-61 1.8E-65 522.5 39.3 349 135-569 15-425 (454)
2 PF07995 GSDH: Glucose / Sorbo 100.0 5.8E-61 1.3E-65 508.7 32.2 322 151-573 5-331 (331)
3 COG2133 Glucose/sorbosone dehy 100.0 1.3E-49 2.8E-54 426.6 34.1 334 137-577 54-397 (399)
4 TIGR02604 Piru_Ver_Nterm putat 100.0 2.5E-33 5.3E-38 301.1 32.6 319 139-577 1-366 (367)
5 PF08450 SGL: SMP-30/Gluconola 98.5 0.00017 3.7E-09 73.0 27.3 237 152-568 4-245 (246)
6 PF03024 Folate_rec: Folate re 98.5 3.1E-08 6.8E-13 96.1 0.0 51 5-72 59-113 (167)
7 PLN02919 haloacid dehalogenase 97.9 0.0087 1.9E-07 73.7 31.0 148 391-577 737-887 (1057)
8 PF08450 SGL: SMP-30/Gluconola 97.7 0.0014 3.1E-08 66.3 16.6 147 151-413 89-244 (246)
9 PF10282 Lactonase: Lactonase, 97.1 0.027 5.9E-07 60.4 18.2 166 151-420 147-317 (345)
10 PLN02919 haloacid dehalogenase 95.4 0.87 1.9E-05 56.5 19.7 32 390-423 855-886 (1057)
11 PRK11028 6-phosphogluconolacto 95.2 2.1 4.6E-05 45.0 19.5 64 151-228 129-193 (330)
12 KOG4659 Uncharacterized conser 93.4 2.1 4.6E-05 53.0 16.0 161 387-580 397-564 (1899)
13 COG3386 Gluconolactonase [Carb 93.3 3.7 8.1E-05 44.0 16.6 78 308-422 113-190 (307)
14 PRK11028 6-phosphogluconolacto 92.8 10 0.00022 39.9 19.1 31 392-423 124-154 (330)
15 COG2706 3-carboxymuconate cycl 92.7 5 0.00011 43.6 16.3 157 153-414 150-310 (346)
16 TIGR02604 Piru_Ver_Nterm putat 92.2 1.5 3.2E-05 47.8 12.0 78 141-230 63-143 (367)
17 TIGR03866 PQQ_ABC_repeats PQQ- 92.1 12 0.00026 37.3 17.7 26 151-177 160-186 (300)
18 PF06977 SdiA-regulated: SdiA- 90.9 5.4 0.00012 41.6 13.9 77 141-227 55-135 (248)
19 TIGR03606 non_repeat_PQQ dehyd 90.6 5.1 0.00011 45.3 14.4 40 383-427 19-58 (454)
20 COG3386 Gluconolactonase [Carb 89.8 11 0.00025 40.4 15.7 140 142-354 154-299 (307)
21 PF10282 Lactonase: Lactonase, 89.3 8.5 0.00018 41.3 14.4 67 151-228 195-263 (345)
22 COG4257 Vgb Streptogramin lyas 84.6 44 0.00094 35.9 15.7 72 300-418 226-298 (353)
23 PRK04043 tolB translocation pr 81.7 94 0.002 34.7 21.4 43 135-177 174-220 (419)
24 TIGR02658 TTQ_MADH_Hv methylam 81.5 87 0.0019 34.5 17.4 74 304-417 244-322 (352)
25 COG4257 Vgb Streptogramin lyas 80.7 59 0.0013 34.9 14.9 39 139-180 52-92 (353)
26 PF01436 NHL: NHL repeat; Int 80.5 3.3 7.1E-05 28.4 4.0 23 551-573 3-27 (28)
27 PF03088 Str_synth: Strictosid 79.6 6.4 0.00014 34.8 6.5 78 310-418 2-80 (89)
28 PF01436 NHL: NHL repeat; Int 79.0 2.7 5.8E-05 28.9 3.2 23 393-417 1-23 (28)
29 PF06977 SdiA-regulated: SdiA- 78.2 14 0.0003 38.6 9.6 67 151-228 121-189 (248)
30 COG3391 Uncharacterized conser 77.6 1.2E+02 0.0025 33.4 20.2 68 140-228 107-178 (381)
31 KOG0315 G-protein beta subunit 76.9 73 0.0016 33.7 14.0 27 152-179 129-155 (311)
32 smart00135 LY Low-density lipo 74.8 5.1 0.00011 28.7 3.9 34 388-422 3-36 (43)
33 TIGR02658 TTQ_MADH_Hv methylam 74.6 43 0.00093 36.8 12.6 22 305-327 298-321 (352)
34 KOG0282 mRNA splicing factor [ 73.9 24 0.00052 39.9 10.4 115 97-231 239-363 (503)
35 COG3204 Uncharacterized protei 72.3 1.1E+02 0.0025 33.0 14.4 68 151-228 132-199 (316)
36 PF05787 DUF839: Bacterial pro 72.1 18 0.00039 41.8 9.4 102 310-417 354-457 (524)
37 PF07494 Reg_prop: Two compone 69.9 5.6 0.00012 26.4 2.8 20 550-569 5-24 (24)
38 KOG4659 Uncharacterized conser 69.6 38 0.00082 42.8 11.4 73 137-229 477-552 (1899)
39 PF07995 GSDH: Glucose / Sorbo 69.5 20 0.00044 38.5 8.6 67 151-229 117-200 (331)
40 PTZ00420 coronin; Provisional 69.5 1.1E+02 0.0025 35.7 15.1 59 151-217 78-136 (568)
41 cd00200 WD40 WD40 domain, foun 68.4 1.1E+02 0.0024 29.0 12.9 58 151-229 181-238 (289)
42 PTZ00421 coronin; Provisional 66.2 1.1E+02 0.0024 35.0 14.1 57 151-217 79-136 (493)
43 COG4946 Uncharacterized protei 62.8 36 0.00077 38.8 8.8 68 140-230 392-462 (668)
44 PF13449 Phytase-like: Esteras 60.1 1.7E+02 0.0037 31.3 13.5 21 306-327 145-168 (326)
45 PF02239 Cytochrom_D1: Cytochr 58.5 2.8E+02 0.0062 30.4 20.5 67 141-228 28-96 (369)
46 COG2706 3-carboxymuconate cycl 55.1 2.8E+02 0.006 30.6 13.8 108 107-226 147-260 (346)
47 PF05787 DUF839: Bacterial pro 54.3 2.2E+02 0.0047 33.1 13.8 21 209-232 352-372 (524)
48 TIGR02800 propeller_TolB tol-p 52.4 3.3E+02 0.0072 29.3 19.4 38 139-177 179-221 (417)
49 KOG0641 WD40 repeat protein [G 51.5 1.8E+02 0.0039 30.4 11.0 22 204-229 30-51 (350)
50 TIGR03866 PQQ_ABC_repeats PQQ- 50.9 2.6E+02 0.0057 27.7 20.2 26 151-177 76-102 (300)
51 KOG1445 Tumor-specific antigen 50.8 1.2E+02 0.0026 35.9 10.6 51 130-181 610-661 (1012)
52 PTZ00421 coronin; Provisional 50.7 2.5E+02 0.0054 32.2 13.5 57 151-227 129-185 (493)
53 PRK01742 tolB translocation pr 50.5 2.9E+02 0.0063 30.6 13.8 39 138-177 192-235 (429)
54 PRK02889 tolB translocation pr 50.0 4E+02 0.0086 29.5 20.8 26 151-177 199-227 (427)
55 TIGR03032 conserved hypothetic 49.0 77 0.0017 34.5 8.4 110 96-232 134-263 (335)
56 KOG0289 mRNA splicing factor [ 48.6 92 0.002 35.2 9.0 53 112-178 320-377 (506)
57 COG2133 Glucose/sorbosone dehy 48.2 45 0.00098 37.3 6.8 66 151-230 180-259 (399)
58 KOG2055 WD40 repeat protein [G 48.1 1.8E+02 0.0039 33.1 11.2 136 151-326 348-501 (514)
59 PF00400 WD40: WD domain, G-be 47.7 74 0.0016 22.1 5.7 25 151-176 15-39 (39)
60 KOG0295 WD40 repeat-containing 47.1 1.9E+02 0.0041 32.1 11.0 95 158-327 302-396 (406)
61 PRK01029 tolB translocation pr 46.4 4.2E+02 0.0091 29.6 14.2 27 151-177 284-312 (428)
62 TIGR03118 PEPCTERM_chp_1 conse 46.3 14 0.00029 40.0 2.3 30 387-418 16-45 (336)
63 KOG0266 WD40 repeat-containing 45.8 2.4E+02 0.0052 31.7 12.3 59 151-230 207-266 (456)
64 PF14870 PSII_BNR: Photosynthe 44.9 63 0.0014 34.8 7.1 59 151-226 190-248 (302)
65 KOG0266 WD40 repeat-containing 44.7 4.8E+02 0.01 29.3 14.5 69 139-229 236-307 (456)
66 PRK03629 tolB translocation pr 44.3 4.9E+02 0.011 28.9 21.4 27 151-177 202-230 (429)
67 PRK02889 tolB translocation pr 43.7 4E+02 0.0087 29.5 13.5 26 151-176 287-314 (427)
68 PRK04792 tolB translocation pr 42.1 5.4E+02 0.012 28.8 19.0 27 151-177 221-249 (448)
69 PRK00178 tolB translocation pr 41.7 5.1E+02 0.011 28.4 19.8 40 137-177 186-230 (430)
70 KOG0272 U4/U6 small nuclear ri 41.6 3E+02 0.0066 31.1 11.6 53 151-227 307-362 (459)
71 KOG2055 WD40 repeat protein [G 40.2 2.4E+02 0.0053 32.2 10.7 26 152-177 262-287 (514)
72 KOG2110 Uncharacterized conser 38.6 3.3E+02 0.0072 30.3 11.2 50 162-230 99-148 (391)
73 COG3211 PhoX Predicted phospha 37.6 3.3E+02 0.0072 32.1 11.6 110 211-350 421-547 (616)
74 PF08662 eIF2A: Eukaryotic tra 37.2 3.2E+02 0.0069 27.0 10.4 84 139-274 92-179 (194)
75 PRK04922 tolB translocation pr 35.1 6.6E+02 0.014 27.8 13.8 27 151-177 295-323 (433)
76 PRK04922 tolB translocation pr 34.3 6.8E+02 0.015 27.7 21.0 39 139-177 193-235 (433)
77 PRK05137 tolB translocation pr 33.5 6.9E+02 0.015 27.6 21.1 40 138-177 190-233 (435)
78 KOG2919 Guanine nucleotide-bin 33.2 2.3E+02 0.0051 31.1 8.9 99 152-323 163-268 (406)
79 PRK04792 tolB translocation pr 31.9 7.7E+02 0.017 27.6 17.0 26 151-177 265-293 (448)
80 TIGR03803 Gloeo_Verruco Gloeo_ 31.1 78 0.0017 23.2 3.5 26 317-354 1-26 (34)
81 TIGR03074 PQQ_membr_DH membran 30.2 1.1E+03 0.024 28.9 19.1 99 310-411 379-484 (764)
82 PF00058 Ldl_recept_b: Low-den 29.9 73 0.0016 23.8 3.4 31 345-403 12-42 (42)
83 PF15145 DUF4577: Domain of un 29.2 68 0.0015 29.7 3.6 20 556-575 12-32 (128)
84 PRK01029 tolB translocation pr 29.1 8.4E+02 0.018 27.2 18.5 41 137-177 172-218 (428)
85 KOG1214 Nidogen and related ba 28.8 3.3E+02 0.0072 33.5 9.9 33 385-418 1102-1134(1289)
86 PTZ00420 coronin; Provisional 28.4 8.4E+02 0.018 28.7 13.3 26 151-177 129-155 (568)
87 PRK03629 tolB translocation pr 28.4 8.5E+02 0.018 27.0 20.1 26 151-177 246-274 (429)
88 PF06433 Me-amine-dh_H: Methyl 28.2 7.7E+02 0.017 27.2 12.1 25 142-167 30-54 (342)
89 TIGR03075 PQQ_enz_alc_DH PQQ-d 27.8 2E+02 0.0044 33.2 8.1 95 310-409 238-338 (527)
90 PF03088 Str_synth: Strictosid 27.2 1.9E+02 0.0042 25.5 6.1 40 137-177 44-86 (89)
91 KOG0271 Notchless-like WD40 re 25.9 4.7E+02 0.01 29.4 9.8 53 151-219 161-213 (480)
92 PF06739 SBBP: Beta-propeller 25.8 60 0.0013 23.9 2.3 18 551-568 14-31 (38)
93 KOG0283 WD40 repeat-containing 25.6 1.7E+02 0.0037 35.2 6.9 76 139-231 400-482 (712)
94 PF07676 PD40: WD40-like Beta 25.1 1.7E+02 0.0037 20.8 4.6 19 151-169 12-30 (39)
95 KOG0272 U4/U6 small nuclear ri 25.0 2.8E+02 0.0061 31.3 8.0 78 133-231 201-282 (459)
96 PRK05137 tolB translocation pr 24.9 9.6E+02 0.021 26.5 19.4 26 151-177 249-277 (435)
97 PF10313 DUF2415: Uncharacteri 24.0 1.8E+02 0.0039 22.5 4.5 27 151-177 4-32 (43)
98 cd00200 WD40 WD40 domain, foun 23.6 6.2E+02 0.013 23.8 13.7 50 151-217 55-104 (289)
99 PRK02888 nitrous-oxide reducta 23.2 2.3E+02 0.0049 33.8 7.3 76 143-230 315-394 (635)
100 PF14517 Tachylectin: Tachylec 23.1 6.1E+02 0.013 26.4 9.7 122 143-327 73-198 (229)
101 COG3292 Predicted periplasmic 22.9 92 0.002 36.4 4.0 42 549-590 246-287 (671)
102 COG3204 Uncharacterized protei 22.6 1E+03 0.022 26.0 11.5 18 309-327 287-304 (316)
103 KOG3342 Signal peptidase I [In 22.0 1.7E+02 0.0038 28.7 5.1 70 476-568 45-115 (180)
104 PF01731 Arylesterase: Arylest 21.5 2.4E+02 0.0051 24.8 5.5 39 141-180 45-86 (86)
105 PRK01742 tolB translocation pr 21.3 8.5E+02 0.018 26.9 11.3 25 151-175 295-319 (429)
106 TIGR03075 PQQ_enz_alc_DH PQQ-d 21.0 7.4E+02 0.016 28.7 11.0 101 304-415 385-501 (527)
107 COG4014 Uncharacterized protei 20.6 1E+02 0.0022 27.5 2.9 20 549-568 23-42 (97)
No 1
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=100.00 E-value=8.5e-61 Score=522.49 Aligned_cols=349 Identities=23% Similarity=0.423 Sum_probs=258.9
Q ss_pred CCCCCcEEEEEeeCce--eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceee
Q 006811 135 NPPQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMG 211 (630)
Q Consensus 135 ~~p~G~~le~va~Gl~--~~ma~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLG 211 (630)
+.|.+|++|+|++||. |+|+++||| ||||+|| .|+|++++ ++++. ..+++++...+...+|+||||
T Consensus 15 ~~p~~f~~~~va~GL~~Pw~maflPDG--~llVtER~~G~I~~v~-~~~~~--------~~~~~~l~~v~~~~ge~GLlg 83 (454)
T TIGR03606 15 AASENFDKKVLLSGLNKPWALLWGPDN--QLWVTERATGKILRVN-PETGE--------VKVVFTLPEIVNDAQHNGLLG 83 (454)
T ss_pred cCCCCcEEEEEECCCCCceEEEEcCCC--eEEEEEecCCEEEEEe-CCCCc--------eeeeecCCceeccCCCCceee
Confidence 4588999999999998 999999999 8999999 69999985 33222 234456643333347999999
Q ss_pred eeeCCCC---CCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccC
Q 006811 212 MAFHPNF---AKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRA 288 (630)
Q Consensus 212 iAfhPdF---~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~ 288 (630)
|||||+| ++|++|||+|+....... . ....+|+||+++... .
T Consensus 84 lal~PdF~~~~~n~~lYvsyt~~~~~~~-------------------------~--~~~~~I~R~~l~~~~--------~ 128 (454)
T TIGR03606 84 LALHPDFMQEKGNPYVYISYTYKNGDKE-------------------------L--PNHTKIVRYTYDKST--------Q 128 (454)
T ss_pred EEECCCccccCCCcEEEEEEeccCCCCC-------------------------c--cCCcEEEEEEecCCC--------C
Confidence 9999999 999999999996432100 0 013599999985431 1
Q ss_pred CCCCcEEEEEeccCC-CCccceeeEEcCCCCeEEEEeCCCCCCC-----Ccc----------cccccCCCCCeeEEEEec
Q 006811 289 KPSEVRRIFTMGLSF-NGHHGGQLLFGPTDGYMYFMMGDGGGTA-----DPY----------NFSQNKKSLLGKITRLDV 352 (630)
Q Consensus 289 ~~~~~~~Il~~~~P~-~~H~GG~L~FGp~DG~LYv~~GDgg~~~-----DP~----------~~aQn~~sl~GKILRIdv 352 (630)
.+.++++||+ ++|. ..|+|++|+|+| ||+|||++||++... .|. .++|++++++|||||||+
T Consensus 129 ~l~~~~~Il~-~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~ 206 (454)
T TIGR03606 129 TLEKPVDLLA-GLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNL 206 (454)
T ss_pred ccccceEEEe-cCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcC
Confidence 2345677885 5675 579999999999 999999999986421 110 123488899999999999
Q ss_pred CCCCchhhhhhcccCCCccCCCCCCCCCCCCCCCeEEEeccccceeeeecCCCCCeeEEEeccCCCceeEEEeccCCCCC
Q 006811 353 DNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYG 432 (630)
Q Consensus 353 Dg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~afD~~~g~~l~~~DvG~d~~EEIn~I~~G~NYG 432 (630)
|| +||+||||++ ++++||||||||||||++||| +| +||++|||++.+||||+|++|+|||
T Consensus 207 DG----------------siP~dNPf~~--g~~~eIyA~G~RNp~Gla~dp-~G-~Lw~~e~Gp~~~DEiN~I~~G~NYG 266 (454)
T TIGR03606 207 DG----------------SIPKDNPSIN--GVVSHIFTYGHRNPQGLAFTP-DG-TLYASEQGPNSDDELNIIVKGGNYG 266 (454)
T ss_pred CC----------------CCCCCCCccC--CCcceEEEEeccccceeEECC-CC-CEEEEecCCCCCcEEEEeccCCcCC
Confidence 99 8999999984 678999999999999999999 67 5999999999999999999999999
Q ss_pred cccccCCC--------cCCCCC-----------CCCCCC-----CCCCCCCCCceee-cc-------CCccCC-----CC
Q 006811 433 WRLYEGPY--------LFTPLE-----------TPGGIT-----PLNSVSPIFPVLG-YN-------HSEVNK-----KE 475 (630)
Q Consensus 433 Wp~~eG~~--------~~~p~~-----------~p~~~~-----~~~~~~~i~Pi~~-y~-------H~~~~~-----~~ 475 (630)
||.++|.. .|.... .+.+.. ......++.|++. |. |.-... ..
T Consensus 267 WP~~~G~~~~~~~~~~~ys~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (454)
T TIGR03606 267 WPNVAGYKDDSGYVYANYSAAANKSIKTLAQNGIPAGVPVTKESEWTAKNFVPPLKTLYTVQDTYNYNDATCGEMTYICW 346 (454)
T ss_pred CCceeecCccccccccccccccccccccccccccCcCccccccccccCccccCCceeccccccccccccccccccccccC
Confidence 99999732 222110 010100 0111258899974 20 110000 13
Q ss_pred CCccccceeeec--CCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCcCCCCCCccc
Q 006811 476 GSASITGGYFYR--SMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIY 553 (630)
Q Consensus 476 gs~S~tGg~vYr--G~~fP~l~G~ylfgD~~sg~lw~~~~~p~~sG~~~~~~i~f~c~~~~p~~c~~~~g~~~~~~gri~ 553 (630)
+++|++|+.||+ |++||+|.|.+|++-+..++|+++.++.+. ++.+..+.. ++...+|||
T Consensus 347 psiapsg~~~y~~~g~~~p~w~g~llv~~L~~~~l~r~~l~~~~-~~v~~~~~~-----------------~~~~~~RiR 408 (454)
T TIGR03606 347 PTIAPSSAYYYKGGEKGITGWENSLLIPSLKRGVIYRIKLDPDY-STVYGDAVP-----------------MFKTNNRYR 408 (454)
T ss_pred CCcCCceeEEEecCcccCcccCCCEEEEEcCCCeEEEEEecCCc-ceecceeEE-----------------eecCCCeeE
Confidence 779999999999 699999999999999999999999876431 111101111 111257999
Q ss_pred eEEEcCCC-cEEEEeCC
Q 006811 554 SFGEDNRK-DIFILTSD 569 (630)
Q Consensus 554 sf~ed~dG-eLYvlts~ 569 (630)
+|.++||| .|||++++
T Consensus 409 dv~~~pDg~~iy~~td~ 425 (454)
T TIGR03606 409 DVIASPDGNVLYVATDN 425 (454)
T ss_pred EEEECCCCCEEEEEEcC
Confidence 99999997 99999973
No 2
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=100.00 E-value=5.8e-61 Score=508.66 Aligned_cols=322 Identities=34% Similarity=0.586 Sum_probs=238.7
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEee
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNC 230 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsYs~ 230 (630)
|+|+++||| ||||+||.|+||+++ .+|+. ..++.++. +|...+|+|||||||||+|.+|++|||+|+.
T Consensus 5 ~~~a~~pdG--~l~v~e~~G~i~~~~--~~g~~-------~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 5 RSMAFLPDG--RLLVAERSGRIWVVD--KDGSL-------KTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp EEEEEETTS--CEEEEETTTEEEEEE--TTTEE-------CEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred eEEEEeCCC--cEEEEeCCceEEEEe--CCCcC-------cceecccc-cccccccCCcccceeccccCCCCEEEEEEEc
Confidence 899999998 899999999999986 33442 12344553 6778899999999999999999999999997
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEEEEEeccCC---CCcc
Q 006811 231 DKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSF---NGHH 307 (630)
Q Consensus 231 ~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~Il~~~~P~---~~H~ 307 (630)
..... .....+|+||+.+... ....+.++|++ ++|. ..|+
T Consensus 73 ~~~~~----------------------------~~~~~~v~r~~~~~~~--------~~~~~~~~l~~-~~p~~~~~~H~ 115 (331)
T PF07995_consen 73 ADEDG----------------------------GDNDNRVVRFTLSDGD--------GDLSSEEVLVT-GLPDTSSGNHN 115 (331)
T ss_dssp E-TSS----------------------------SSEEEEEEEEEEETTS--------CEEEEEEEEEE-EEES-CSSSS-
T ss_pred ccCCC----------------------------CCcceeeEEEeccCCc--------cccccceEEEE-EeCCCCCCCCC
Confidence 52111 1235799999986541 22345566765 4454 6799
Q ss_pred ceeeEEcCCCCeEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCCCCCCCCCCe
Q 006811 308 GGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 387 (630)
Q Consensus 308 GG~L~FGp~DG~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pE 387 (630)
|++|.|+| ||+|||++||.++ ...+|++.++.||||||++|| +||.||||++..+...|
T Consensus 116 g~~l~fgp-DG~LYvs~G~~~~----~~~~~~~~~~~G~ilri~~dG----------------~~p~dnP~~~~~~~~~~ 174 (331)
T PF07995_consen 116 GGGLAFGP-DGKLYVSVGDGGN----DDNAQDPNSLRGKILRIDPDG----------------SIPADNPFVGDDGADSE 174 (331)
T ss_dssp EEEEEE-T-TSEEEEEEB-TTT----GGGGCSTTSSTTEEEEEETTS----------------SB-TTSTTTTSTTSTTT
T ss_pred CccccCCC-CCcEEEEeCCCCC----cccccccccccceEEEecccC----------------cCCCCCccccCCCceEE
Confidence 99999999 9999999999886 257999999999999999999 79999999998889999
Q ss_pred EEEeccccceeeeecCCCCCeeEEEeccCCCceeEEEeccCCCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCceeecc
Q 006811 388 IWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGGITPLNSVSPIFPVLGYN 467 (630)
Q Consensus 388 I~A~GlRNP~r~afD~~~g~~l~~~DvG~d~~EEIn~I~~G~NYGWp~~eG~~~~~p~~~p~~~~~~~~~~~i~Pi~~y~ 467 (630)
|||+|||||+||+|||.+| +||++|||++..||||+|++|+|||||++++...+.... .... .....++.|++.|.
T Consensus 175 i~A~GlRN~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~--~~~~-~~~~~~~~P~~~~~ 250 (331)
T PF07995_consen 175 IYAYGLRNPFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPP--IGDA-PSCPGFVPPVFAYP 250 (331)
T ss_dssp EEEE--SEEEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS---ECTG-SS-TTS---SEEET
T ss_pred EEEeCCCccccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCc--cccc-cCCCCcCccceeec
Confidence 9999999999999999988 699999999999999999999999999999877654321 0111 12234789999996
Q ss_pred CCccCCCCCCccccceeeecCCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCcCCC
Q 006811 468 HSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLP 547 (630)
Q Consensus 468 H~~~~~~~gs~S~tGg~vYrG~~fP~l~G~ylfgD~~sg~lw~~~~~p~~sG~~~~~~i~f~c~~~~p~~c~~~~g~~~~ 547 (630)
| +.||+|++||+|.+||+|+|.||++|+..++||.+..+.. +..... ..| + ..
T Consensus 251 ~--------~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~--~~~~~~-~~~------------~----~~ 303 (331)
T PF07995_consen 251 P--------HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED--GSVTEE-EEF------------L----GG 303 (331)
T ss_dssp T--------T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT--EEEEEE-EEE------------C----TT
T ss_pred C--------ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC--CCccce-EEc------------c----cc
Confidence 5 3899999999999999999999999999999999987542 221111 111 1 12
Q ss_pred CCCccceEEEcCCCcEEEEeC--CeEEE
Q 006811 548 SLGYIYSFGEDNRKDIFILTS--DGVYR 573 (630)
Q Consensus 548 ~~gri~sf~ed~dGeLYvlts--~gIyR 573 (630)
..+||++|++++||+|||+++ +.|||
T Consensus 304 ~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 304 FGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp SSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred CCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 245999999999999999987 56998
No 3
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-49 Score=426.59 Aligned_cols=334 Identities=26% Similarity=0.407 Sum_probs=261.0
Q ss_pred CCCcEEEEEeeCce--eeEEEcCCCCceEEEEecC-ceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeee
Q 006811 137 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQE-GKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMA 213 (630)
Q Consensus 137 p~G~~le~va~Gl~--~~ma~~pDGs~RlfV~eq~-G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiA 213 (630)
+.++.++.++.||. |.|++.||| +++|+|+. |.|+++. ..+. ..+-+.-...|...++.|+|++|
T Consensus 54 ~~~~~~~~~a~gLe~p~~~~~lP~G--~~~v~er~~G~l~~i~--~g~~--------~~~~~~~~~~~~~~~~~Gll~~a 121 (399)
T COG2133 54 AKGVSVEVVAQGLEHPWGLARLPDG--VLLVTERPTGRLRLIS--DGGS--------ASPPVSTVPIVLLRGQGGLLDIA 121 (399)
T ss_pred ccceecccccccccCchhheecCCc--eEEEEccCCccEEEec--CCCc--------ccccccccceEEeccCCCccceE
Confidence 35799999999988 999999999 89999998 9888763 2221 11222333456778899999999
Q ss_pred eCCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCc
Q 006811 214 FHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEV 293 (630)
Q Consensus 214 fhPdF~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~ 293 (630)
++|+|+++...|++|+....... ..+++++...... ..+.++.
T Consensus 122 l~~~fa~~~~~~~~~a~~~~~~~-----------------------------~~n~~~~~~~~~g--------~~~l~~~ 164 (399)
T COG2133 122 LSPDFAQGRLVYFGISEPGGGLY-----------------------------VANRVAIGRLPGG--------DTKLSEP 164 (399)
T ss_pred ecccccccceeeeEEEeecCCce-----------------------------EEEEEEEEEcCCC--------ccccccc
Confidence 99999999999999997543210 1234444443321 2345677
Q ss_pred EEEEEeccCCC-CccceeeEEcCCCCeEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccC
Q 006811 294 RRIFTMGLSFN-GHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSI 372 (630)
Q Consensus 294 ~~Il~~~~P~~-~H~GG~L~FGp~DG~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsI 372 (630)
++|++ .+|.. .|+|++|+|+| ||+|||++||.++. ..+|+..++.|||+|++.++ .|
T Consensus 165 ~~i~~-~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~----~~aq~~~~~~Gk~~r~~~a~----------------~~ 222 (399)
T COG2133 165 KVIFR-GIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDP----ALAQDNVSLAGKVLRIDRAG----------------II 222 (399)
T ss_pred cEEee-cCCCCCCcCcccEEECC-CCcEEEEeCCCCCc----ccccCccccccceeeeccCc----------------cc
Confidence 88885 78976 58899999999 99999999998754 47999999999999999999 79
Q ss_pred CCCCCCCCCCCCCCeEEEeccccceeeeecCCCCCeeEEEeccC---CCceeEEEeccCCCCCcccccCCCcCCCCCCCC
Q 006811 373 PKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQ---DVYEEVDIITRGGNYGWRLYEGPYLFTPLETPG 449 (630)
Q Consensus 373 P~DNPF~~~~~~~pEI~A~GlRNP~r~afD~~~g~~l~~~DvG~---d~~EEIn~I~~G~NYGWp~~eG~~~~~p~~~p~ 449 (630)
|.||||.+ +||||+|||||++++|||.+| .||++|||+ -..||||+|++|+|||||++.....+++...+.
T Consensus 223 ~~d~p~~~-----~~i~s~G~RN~qGl~w~P~tg-~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~ 296 (399)
T COG2133 223 PADNPFPN-----SEIWSYGHRNPQGLAWHPVTG-ALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPD 296 (399)
T ss_pred ccCCCCCC-----cceEEeccCCccceeecCCCC-cEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCC
Confidence 99999985 799999999999999999998 599999999 568999999999999999998777777664433
Q ss_pred CCCCCCCCCCCCceeeccCCccCCCCCCccccceeeecCCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeee
Q 006811 450 GITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFS 529 (630)
Q Consensus 450 ~~~~~~~~~~i~Pi~~y~H~~~~~~~gs~S~tGg~vYrG~~fP~l~G~ylfgD~~sg~lw~~~~~p~~sG~~~~~~i~f~ 529 (630)
.+. ....+.|++.| .+|.|++||.||+|+.||+|+|.+|++-+.+-.+-. ..+ .|++++....
T Consensus 297 -~~~--~~~~~~p~~~~--------~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~--~~~--~g~~~~~~~~-- 359 (399)
T COG2133 297 -GTV--VAGAIQPVYTW--------APHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLR--LRP--DGNYKVVLTG-- 359 (399)
T ss_pred -Ccc--cccccCCceee--------ccccccceeEEecCCcCccccCcEEEEeecceeEEE--ecc--CCCcceEEEE--
Confidence 122 23588999999 456899999999999999999999999886632222 333 3544433221
Q ss_pred cCCCCcccccccCCcCCCCCCccceEEEcCCCcEEEEeCC---eEEEEecC
Q 006811 530 CARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILTSD---GVYRVVRP 577 (630)
Q Consensus 530 c~~~~p~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlts~---gIyRiv~p 577 (630)
|+.+ ...|||+++.+++||.|||+++. .||||.+.
T Consensus 360 ----------fl~~---d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 360 ----------FLSG---DLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred ----------EEec---CCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 1121 11389999999999999999974 69999864
No 4
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=100.00 E-value=2.5e-33 Score=301.08 Aligned_cols=319 Identities=18% Similarity=0.231 Sum_probs=221.1
Q ss_pred CcEEEEEeeC--ce--eeEEEcCCCCceEEEEec------------Cc-eEEEEEccCCCCCceeeecCCCCCcCCccce
Q 006811 139 GLCLEKIGNG--SY--LNMVAHPDGSNRAFFSNQ------------EG-KIWLATIPEQGLGETMELDASSPFADLTDEV 201 (630)
Q Consensus 139 G~~le~va~G--l~--~~ma~~pDGs~RlfV~eq------------~G-~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V 201 (630)
||++|.+|+. +. ++|++.++| ||||+|. .| +|+++. +.+++|+.. +. .|
T Consensus 1 Gf~~~l~A~~p~~~~P~~ia~d~~G--~l~V~e~~~y~~~~~~~~~~~~rI~~l~-d~dgdG~~d---~~--------~v 66 (367)
T TIGR02604 1 GFKVTLFAAEPLLRNPIAVCFDERG--RLWVAEGITYSRPAGRQGPLGDRILILE-DADGDGKYD---KS--------NV 66 (367)
T ss_pred CcEEEEEECCCccCCCceeeECCCC--CEEEEeCCcCCCCCCCCCCCCCEEEEEE-cCCCCCCcc---ee--------EE
Confidence 7999999987 55 999999999 8999983 34 898886 344555321 11 34
Q ss_pred eeCCCCceeeeeeCCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCC
Q 006811 202 HFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASE 281 (630)
Q Consensus 202 ~~~~e~GLLGiAfhPdF~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~ 281 (630)
..++.....||++++ +| +||+-. ..|.+|+..+...
T Consensus 67 fa~~l~~p~Gi~~~~----~G-lyV~~~--------------------------------------~~i~~~~d~~gdg- 102 (367)
T TIGR02604 67 FAEELSMVTGLAVAV----GG-VYVATP--------------------------------------PDILFLRDKDGDD- 102 (367)
T ss_pred eecCCCCccceeEec----CC-EEEeCC--------------------------------------CeEEEEeCCCCCC-
Confidence 444555679999985 57 888421 1577776432210
Q ss_pred cchhccCCCCCcEEEEEeccCCC----CccceeeEEcCCCCeEEEEeCCCCCCC--CcccccccCCCCCeeEEEEecCCC
Q 006811 282 PSLAKRAKPSEVRRIFTMGLSFN----GHHGGQLLFGPTDGYMYFMMGDGGGTA--DPYNFSQNKKSLLGKITRLDVDNI 355 (630)
Q Consensus 282 ~~~~~~~~~~~~~~Il~~~~P~~----~H~GG~L~FGp~DG~LYv~~GDgg~~~--DP~~~aQn~~sl~GKILRIdvDg~ 355 (630)
.++ .+.++|+ .+++.. .|....|.|+| ||+|||+.|+.+... .|....++.....|+|+|+++|+.
T Consensus 103 -----~ad-~~~~~l~-~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~ 174 (367)
T TIGR02604 103 -----KAD-GEREVLL-SGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG 174 (367)
T ss_pred -----CCC-CccEEEE-EccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence 111 1334454 356653 23455899999 999999999865321 111123455667899999999982
Q ss_pred CchhhhhhcccCCCccCCCCCCCCCCCCCCCeEEEeccccceeeeecCCCCCeeEEEeccCCCceeEEEeccCCCCCccc
Q 006811 356 PSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRL 435 (630)
Q Consensus 356 p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~afD~~~g~~l~~~DvG~d~~EEIn~I~~G~NYGWp~ 435 (630)
..|+||.|+|||++++||+. | .||++|++....+||+.+.+|+|||||.
T Consensus 175 -----------------------------~~e~~a~G~rnp~Gl~~d~~-G-~l~~tdn~~~~~~~i~~~~~g~~~g~~~ 223 (367)
T TIGR02604 175 -----------------------------KLRVVAHGFQNPYGHSVDSW-G-DVFFCDNDDPPLCRVTPVAEGGRNGYQS 223 (367)
T ss_pred -----------------------------eEEEEecCcCCCccceECCC-C-CEEEEccCCCceeEEcccccccccCCCC
Confidence 34899999999999999995 6 5999999888889999999999999998
Q ss_pred ccCCCcCCCCCCCCCCC-----CCCCCCCCCceeeccCCccCCCCCCccccceeeecCCCCC-cccCcEEEEEeccceeE
Q 006811 436 YEGPYLFTPLETPGGIT-----PLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDP-CMFGRYLYADLYATALW 509 (630)
Q Consensus 436 ~eG~~~~~p~~~p~~~~-----~~~~~~~i~Pi~~y~H~~~~~~~gs~S~tGg~vYrG~~fP-~l~G~ylfgD~~sg~lw 509 (630)
..+.....+........ ..+....++|+..+. ++.|++|+.||+|.+|| +|+|.+|++|+..++||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~ 295 (367)
T TIGR02604 224 FNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAG--------GGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIV 295 (367)
T ss_pred CCCcccccccccccccccccccccccccccccccccC--------CCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEE
Confidence 77654332221000000 000112445566552 34799999999999999 89999999999999999
Q ss_pred EeecCCCCCCCeeEEEeeeecCCCCcccccccCCcCCCCCCccceEEEcCCCcEEEEe-----------C-------CeE
Q 006811 510 AASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILT-----------S-------DGV 571 (630)
Q Consensus 510 ~~~~~p~~sG~~~~~~i~f~c~~~~p~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlt-----------s-------~gI 571 (630)
.+++++++.+ ++..... |+.+ ...++|++++.+++||+|||++ + |.|
T Consensus 296 ~~~l~~~g~~-~~~~~~~------------~l~~--~~~~~rp~dv~~~pDG~Lyv~d~~~~~i~~~~~d~~~~~~~GrI 360 (367)
T TIGR02604 296 RYSLEPKGAG-FKGERPE------------FLRS--NDTWFRPVNVTVGPDGALYVSDWYDRGIEHHHDDLNDGRNSGRI 360 (367)
T ss_pred EEEeecCCCc-cEeecCc------------eEec--CCCcccccceeECCCCCEEEEEeccCccccCCcccccCCCCceE
Confidence 9998765432 4322111 1121 1246899999999999999998 3 459
Q ss_pred EEEecC
Q 006811 572 YRVVRP 577 (630)
Q Consensus 572 yRiv~p 577 (630)
|||+++
T Consensus 361 yRi~~~ 366 (367)
T TIGR02604 361 YRITPK 366 (367)
T ss_pred EEEccC
Confidence 999975
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.46 E-value=0.00017 Score=73.00 Aligned_cols=237 Identities=22% Similarity=0.308 Sum_probs=136.6
Q ss_pred eEEEcC-CCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 006811 152 NMVAHP-DGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 229 (630)
Q Consensus 152 ~ma~~p-DGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsYs 229 (630)
+.++.+ +| +||+++. .|+|+.++ ++.+. . ++.. ..+..|++++. .++++|+...
T Consensus 4 gp~~d~~~g--~l~~~D~~~~~i~~~~-~~~~~--~--------------~~~~--~~~~~G~~~~~---~~g~l~v~~~ 59 (246)
T PF08450_consen 4 GPVWDPRDG--RLYWVDIPGGRIYRVD-PDTGE--V--------------EVID--LPGPNGMAFDR---PDGRLYVADS 59 (246)
T ss_dssp EEEEETTTT--EEEEEETTTTEEEEEE-TTTTE--E--------------EEEE--SSSEEEEEEEC---TTSEEEEEET
T ss_pred ceEEECCCC--EEEEEEcCCCEEEEEE-CCCCe--E--------------EEEe--cCCCceEEEEc---cCCEEEEEEc
Confidence 456777 55 7999995 78999986 33221 1 1111 22289999993 2599998753
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEEEEEeccCC-CCccc
Q 006811 230 CDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSF-NGHHG 308 (630)
Q Consensus 230 ~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~Il~~~~P~-~~H~G 308 (630)
.. .++ +... ..+++.+++..... ..+.-
T Consensus 60 ~~------------------------------------~~~--~d~~-------------~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 60 GG------------------------------------IAV--VDPD-------------TGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TC------------------------------------EEE--EETT-------------TTEEEEEEEEETTCSCTEEE
T ss_pred Cc------------------------------------eEE--EecC-------------CCcEEEEeeccCCCcccCCC
Confidence 21 122 2211 12445555431111 23444
Q ss_pred eeeEEcCCCCeEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCCCCCCCCCCeE
Q 006811 309 GQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEI 388 (630)
Q Consensus 309 G~L~FGp~DG~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI 388 (630)
..+.++| ||.||++.=...... .... |+|+|++.+++ .++
T Consensus 89 ND~~vd~-~G~ly~t~~~~~~~~-----~~~~----g~v~~~~~~~~------------------------------~~~ 128 (246)
T PF08450_consen 89 NDVAVDP-DGNLYVTDSGGGGAS-----GIDP----GSVYRIDPDGK------------------------------VTV 128 (246)
T ss_dssp EEEEE-T-TS-EEEEEECCBCTT-----CGGS----EEEEEEETTSE------------------------------EEE
T ss_pred ceEEEcC-CCCEEEEecCCCccc-----cccc----cceEEECCCCe------------------------------EEE
Confidence 5799999 999999865433211 1111 99999999861 356
Q ss_pred EEeccccceeeeecCCCCCeeEEEeccCCCceeEEEeccCCCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCceeeccC
Q 006811 389 WALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGGITPLNSVSPIFPVLGYNH 468 (630)
Q Consensus 389 ~A~GlRNP~r~afD~~~g~~l~~~DvG~d~~EEIn~I~~G~NYGWp~~eG~~~~~p~~~p~~~~~~~~~~~i~Pi~~y~H 468 (630)
.+-++.-|.+++|++.. +.||++|-.....-.+++-..+.-.. ....++....
T Consensus 129 ~~~~~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~--------------------------~~~~~~~~~~ 181 (246)
T PF08450_consen 129 VADGLGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELS--------------------------NRRVFIDFPG 181 (246)
T ss_dssp EEEEESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEE--------------------------EEEEEEE-SS
T ss_pred EecCcccccceEECCcc-hheeecccccceeEEEecccccccee--------------------------eeeeEEEcCC
Confidence 78899999999999975 47999999886644444322221111 0112222221
Q ss_pred CccCCCCCCccccceeeecCCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCcCCCC
Q 006811 469 SEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPS 548 (630)
Q Consensus 469 ~~~~~~~gs~S~tGg~vYrG~~fP~l~G~ylfgD~~sg~lw~~~~~p~~sG~~~~~~i~f~c~~~~p~~c~~~~g~~~~~ 548 (630)
+...+-|+.+- -.|+++++++..++|+.+. |+ |.. ...|.+ +
T Consensus 182 -------~~g~pDG~~vD-------~~G~l~va~~~~~~I~~~~--p~--G~~-~~~i~~------------------p- 223 (246)
T PF08450_consen 182 -------GPGYPDGLAVD-------SDGNLWVADWGGGRIVVFD--PD--GKL-LREIEL------------------P- 223 (246)
T ss_dssp -------SSCEEEEEEEB-------TTS-EEEEEETTTEEEEEE--TT--SCE-EEEEE-------------------S-
T ss_pred -------CCcCCCcceEc-------CCCCEEEEEcCCCEEEEEC--CC--ccE-EEEEcC------------------C-
Confidence 11235566552 2588999999999999986 33 543 333432 1
Q ss_pred CCccceEEE-cCC-CcEEEEeC
Q 006811 549 LGYIYSFGE-DNR-KDIFILTS 568 (630)
Q Consensus 549 ~gri~sf~e-d~d-GeLYvlts 568 (630)
..++++++. ++| +.|||++.
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEEEECCCCCEEEEEeC
Confidence 125667777 344 67888763
No 6
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=98.46 E-value=3.1e-08 Score=96.15 Aligned_cols=51 Identities=29% Similarity=0.759 Sum_probs=0.0
Q ss_pred cchhhhHhhhhhc-CccCcccccccccCC---CCcccccccCCCCCCCCcCcccccccccHHHhhcccCccc
Q 006811 5 DSGCSSLLKSILC-AKCDQFAGELFTAGS---VVRPVPLLCNSTGSNSSQSSKATITDFCSEVWDTCQNVSV 72 (630)
Q Consensus 5 ~~~c~~~~~~ilc-~~c~p~~~~l~~~~~---~~~~~p~lc~~~~~~~~~~~~~~~~~yc~~~~~~c~~~~~ 72 (630)
..+|.+++++++| ++||||++|+ +++. +.+.|| ||. +||.++|.+|++.++
T Consensus 59 s~~C~~~~~~~~Cfy~CsP~~~~~-~~~~~~~~~~~~P-LC~---------------~~Cd~wf~aCk~d~t 113 (167)
T PF03024_consen 59 SPRCERFFKQLECFYECSPNAGHW-QAEDRKTRIRGVP-LCA---------------SFCDDWFEACKDDYT 113 (167)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhhhccCCcccccc-ccCCcCCccCCCC-cCH---------------HHHHHHHHHhhhHHh
Confidence 5679999999999 9999999999 5553 688999 999 999999999999875
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.92 E-value=0.0087 Score=73.65 Aligned_cols=148 Identities=15% Similarity=0.163 Sum_probs=73.1
Q ss_pred eccccceeeeecCCCCCeeEEEeccCCCceeEEEeccCCCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCceeecc-CC
Q 006811 391 LGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGGITPLNSVSPIFPVLGYN-HS 469 (630)
Q Consensus 391 ~GlRNP~r~afD~~~g~~l~~~DvG~d~~EEIn~I~~G~NYGWp~~eG~~~~~p~~~p~~~~~~~~~~~i~Pi~~y~-H~ 469 (630)
..+.+|++++|++.+. +||++|.+.+..--++.- .|+- ....|.....+. -++.+. +.
T Consensus 737 ~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~-tg~~---~~~~gg~~~~~~----------------~l~~fG~~d 795 (1057)
T PLN02919 737 TSFAQPSGISLSPDLK-ELYIADSESSSIRALDLK-TGGS---RLLAGGDPTFSD----------------NLFKFGDHD 795 (1057)
T ss_pred ccccCccEEEEeCCCC-EEEEEECCCCeEEEEECC-CCcE---EEEEecccccCc----------------ccccccCCC
Confidence 4678999999999864 699999987654333321 1110 000111000000 000010 00
Q ss_pred ccCCCCCCccccceeeecCCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCcC-CCC
Q 006811 470 EVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGND-LPS 548 (630)
Q Consensus 470 ~~~~~~gs~S~tGg~vYrG~~fP~l~G~ylfgD~~sg~lw~~~~~p~~sG~~~~~~i~f~c~~~~p~~c~~~~g~~-~~~ 548 (630)
......--..|.|+.+-. .|.++++|..+++|..+..+ .+ .. ..+. -. +.+- +..|.. ...
T Consensus 796 G~g~~~~l~~P~Gvavd~-------dG~LYVADs~N~rIrviD~~---tg-~v-~tia--G~-G~~G---~~dG~~~~a~ 857 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAK-------DGQIYVADSYNHKIKKLDPA---TK-RV-TTLA--GT-GKAG---FKDGKALKAQ 857 (1057)
T ss_pred CchhhhhccCCceeeEeC-------CCcEEEEECCCCEEEEEECC---CC-eE-EEEe--cc-CCcC---CCCCcccccc
Confidence 000000002445555432 36789999999988776532 12 21 1111 01 1100 111211 123
Q ss_pred CCccceEEEcCCCcEEEEeCC-eEEEEecC
Q 006811 549 LGYIYSFGEDNRKDIFILTSD-GVYRVVRP 577 (630)
Q Consensus 549 ~gri~sf~ed~dGeLYvlts~-gIyRiv~p 577 (630)
+.++.+++.+++|.|||++++ ...|+.+.
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 568999999999999999863 44455543
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.71 E-value=0.0014 Score=66.27 Aligned_cols=147 Identities=17% Similarity=0.272 Sum_probs=90.8
Q ss_pred eeEEEcCCCCceEEEEecC---------ceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCC
Q 006811 151 LNMVAHPDGSNRAFFSNQE---------GKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKN 221 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~---------G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~N 221 (630)
=.+++.||| ++|+++.. |+||.++ ++ +. . .+...+....-||+|+|+ .
T Consensus 89 ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~-~~-~~--~--------------~~~~~~~~~pNGi~~s~d---g 145 (246)
T PF08450_consen 89 NDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRID-PD-GK--V--------------TVVADGLGFPNGIAFSPD---G 145 (246)
T ss_dssp EEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEE-TT-SE--E--------------EEEEEEESSEEEEEEETT---S
T ss_pred ceEEEcCCC--CEEEEecCCCccccccccceEEEC-CC-Ce--E--------------EEEecCcccccceEECCc---c
Confidence 468999999 79999852 7898876 32 22 1 112233455679999985 4
Q ss_pred CEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEEEEEecc
Q 006811 222 GRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGL 301 (630)
Q Consensus 222 g~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~Il~~~~ 301 (630)
..+|+.-+.. .+|.+|..+.... ...+.+++. ..
T Consensus 146 ~~lyv~ds~~------------------------------------~~i~~~~~~~~~~--------~~~~~~~~~--~~ 179 (246)
T PF08450_consen 146 KTLYVADSFN------------------------------------GRIWRFDLDADGG--------ELSNRRVFI--DF 179 (246)
T ss_dssp SEEEEEETTT------------------------------------TEEEEEEEETTTC--------CEEEEEEEE--E-
T ss_pred hheeeccccc------------------------------------ceeEEEecccccc--------ceeeeeeEE--Ec
Confidence 5688855421 2788998864321 122333333 23
Q ss_pred CCCCccceeeEEcCCCCeEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCCCCC
Q 006811 302 SFNGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSED 381 (630)
Q Consensus 302 P~~~H~GG~L~FGp~DG~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~ 381 (630)
+...-..-.|.++. ||.||++.-. .|+|.|++++|.
T Consensus 180 ~~~~g~pDG~~vD~-~G~l~va~~~-----------------~~~I~~~~p~G~-------------------------- 215 (246)
T PF08450_consen 180 PGGPGYPDGLAVDS-DGNLWVADWG-----------------GGRIVVFDPDGK-------------------------- 215 (246)
T ss_dssp SSSSCEEEEEEEBT-TS-EEEEEET-----------------TTEEEEEETTSC--------------------------
T ss_pred CCCCcCCCcceEcC-CCCEEEEEcC-----------------CCEEEEECCCcc--------------------------
Confidence 33221233699999 9999998653 357999999983
Q ss_pred CCCCCeEEEeccccceeeeecCCCCCeeEEEe
Q 006811 382 SGLQPEIWALGLRNPWRCSFDSDRPSYFMCAD 413 (630)
Q Consensus 382 ~~~~pEI~A~GlRNP~r~afD~~~g~~l~~~D 413 (630)
.-+++..+..+|-.|+|--.+..+||++-
T Consensus 216 ---~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 ---LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 23677888889999999422233799874
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.11 E-value=0.027 Score=60.44 Aligned_cols=166 Identities=17% Similarity=0.329 Sum_probs=94.4
Q ss_pred eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 006811 151 LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 229 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsYs 229 (630)
-.+++.|||. ++||++. ..+|+++.+.+ ..++ |. ....+......|.-.|+|||+ ..++||...
T Consensus 147 H~v~~~pdg~-~v~v~dlG~D~v~~~~~~~-~~~~-l~---------~~~~~~~~~G~GPRh~~f~pd---g~~~Yv~~e 211 (345)
T PF10282_consen 147 HQVVFSPDGR-FVYVPDLGADRVYVYDIDD-DTGK-LT---------PVDSIKVPPGSGPRHLAFSPD---GKYAYVVNE 211 (345)
T ss_dssp EEEEE-TTSS-EEEEEETTTTEEEEEEE-T-TS-T-EE---------EEEEEECSTTSSEEEEEE-TT---SSEEEEEET
T ss_pred eeEEECCCCC-EEEEEecCCCEEEEEEEeC-CCce-EE---------EeeccccccCCCCcEEEEcCC---cCEEEEecC
Confidence 4688999995 7999997 57899987632 2211 21 112334456789999999994 567888653
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEEEEEeccCCC---Cc
Q 006811 230 CDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFN---GH 306 (630)
Q Consensus 230 ~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~Il~~~~P~~---~H 306 (630)
.. ..|..|+.+... ..+...+.+-. +|.. .-
T Consensus 212 ~s------------------------------------~~v~v~~~~~~~--------g~~~~~~~~~~--~~~~~~~~~ 245 (345)
T PF10282_consen 212 LS------------------------------------NTVSVFDYDPSD--------GSLTEIQTIST--LPEGFTGEN 245 (345)
T ss_dssp TT------------------------------------TEEEEEEEETTT--------TEEEEEEEEES--CETTSCSSS
T ss_pred CC------------------------------------CcEEEEeecccC--------CceeEEEEeee--ccccccccC
Confidence 21 255566654221 11222222222 3321 12
Q ss_pred cceeeEEcCCCC-eEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCCCCCCCCC
Q 006811 307 HGGQLLFGPTDG-YMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQ 385 (630)
Q Consensus 307 ~GG~L~FGp~DG-~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~ 385 (630)
....|.+.| || +||++...... + .|++||.++. .+ ..
T Consensus 246 ~~~~i~isp-dg~~lyvsnr~~~s-------------I--~vf~~d~~~g---------------~l-----------~~ 283 (345)
T PF10282_consen 246 APAEIAISP-DGRFLYVSNRGSNS-------------I--SVFDLDPATG---------------TL-----------TL 283 (345)
T ss_dssp SEEEEEE-T-TSSEEEEEECTTTE-------------E--EEEEECTTTT---------------TE-----------EE
T ss_pred CceeEEEec-CCCEEEEEeccCCE-------------E--EEEEEecCCC---------------ce-----------EE
Confidence 567899999 88 69998755210 1 2455543320 00 01
Q ss_pred CeEEEeccccceeeeecCCCCCeeEEEeccCCCce
Q 006811 386 PEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYE 420 (630)
Q Consensus 386 pEI~A~GlRNP~r~afD~~~g~~l~~~DvG~d~~E 420 (630)
-+.+..|-+.|..|++++.. ++||++..+.+...
T Consensus 284 ~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 284 VQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVS 317 (345)
T ss_dssp EEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEE
T ss_pred EEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEE
Confidence 23455667789999999974 58999888876543
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.36 E-value=0.87 Score=56.51 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=23.7
Q ss_pred EeccccceeeeecCCCCCeeEEEeccCCCceeEE
Q 006811 390 ALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVD 423 (630)
Q Consensus 390 A~GlRNP~r~afD~~~g~~l~~~DvG~d~~EEIn 423 (630)
.-.+..|.++++|+. | ++|++|.+-+...-++
T Consensus 855 ~a~l~~P~GIavd~d-G-~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 855 KAQLSEPAGLALGEN-G-RLFVADTNNSLIRYLD 886 (1057)
T ss_pred ccccCCceEEEEeCC-C-CEEEEECCCCEEEEEE
Confidence 344678999999996 4 5999998877544443
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.15 E-value=2.1 Score=45.05 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=38.1
Q ss_pred eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 228 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsY 228 (630)
..++++|||. ++||++. .++|+++++...+ .+. +... ..+......|.-+++|||+ ..++||.-
T Consensus 129 ~~~~~~p~g~-~l~v~~~~~~~v~v~d~~~~g---~l~-----~~~~--~~~~~~~g~~p~~~~~~pd---g~~lyv~~ 193 (330)
T PRK11028 129 HSANIDPDNR-TLWVPCLKEDRIRLFTLSDDG---HLV-----AQEP--AEVTTVEGAGPRHMVFHPN---QQYAYCVN 193 (330)
T ss_pred cEeEeCCCCC-EEEEeeCCCCEEEEEEECCCC---ccc-----ccCC--CceecCCCCCCceEEECCC---CCEEEEEe
Confidence 5677899995 7888886 5999999863222 111 0000 0111112346778999985 45688753
No 12
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.38 E-value=2.1 Score=53.00 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=81.2
Q ss_pred eEEEeccccc---eeeeecCCCCCeeEEEeccCCCceeEEEecc---CCCCCcccccCCCcCCCCCCCCCCCCCCCCCCC
Q 006811 387 EIWALGLRNP---WRCSFDSDRPSYFMCADVGQDVYEEVDIITR---GGNYGWRLYEGPYLFTPLETPGGITPLNSVSPI 460 (630)
Q Consensus 387 EI~A~GlRNP---~r~afD~~~g~~l~~~DvG~d~~EEIn~I~~---G~NYGWp~~eG~~~~~p~~~p~~~~~~~~~~~i 460 (630)
.|..+|+-+| +-+|.||.+| .||++|--..+.=.|.-+++ -.||-==.-.|..|...... ||.... ..
T Consensus 397 tIl~L~~t~~sh~Yy~AvsPvdg-tlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGal----A~ 470 (1899)
T KOG4659|consen 397 TILTLGLTDTSHSYYIAVSPVDG-TLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGAL----AQ 470 (1899)
T ss_pred EEEEecCCCccceeEEEecCcCc-eEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccc-cCcchh----cc
Confidence 4666665554 5799999998 69999876543222211111 23433222234444322212 222111 11
Q ss_pred CceeeccCCccCCCCCCccccceeeecCCCCCcccCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccc
Q 006811 461 FPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKV 540 (630)
Q Consensus 461 ~Pi~~y~H~~~~~~~gs~S~tGg~vYrG~~fP~l~G~ylfgD~~sg~lw~~~~~p~~sG~~~~~~i~f~c~~~~p~~c~~ 540 (630)
..-+ .+|-|+.|- -.|.++|+|= -+|..+. ..|.. ..-+--.-..-.|++|+.
T Consensus 471 dA~L-------------~~PkGIa~d-------k~g~lYfaD~--t~IR~iD----~~giI-stlig~~~~~~~p~~C~~ 523 (1899)
T KOG4659|consen 471 DAQL-------------IFPKGIAFD-------KMGNLYFADG--TRIRVID----TTGII-STLIGTTPDQHPPRTCAQ 523 (1899)
T ss_pred ccee-------------ccCCceeEc-------cCCcEEEecc--cEEEEec----cCceE-EEeccCCCCccCcccccc
Confidence 1112 233344442 3466777764 2222222 23421 111100000124677864
Q ss_pred cCCcCCCCCCccceEEEcC-CCcEEEEeCCeEEEEecCCCC
Q 006811 541 LPGNDLPSLGYIYSFGEDN-RKDIFILTSDGVYRVVRPSRC 580 (630)
Q Consensus 541 ~~g~~~~~~gri~sf~ed~-dGeLYvlts~gIyRiv~ps~~ 580 (630)
......-.+--+++++++| |+.|||++++-||||..--+.
T Consensus 524 ~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV 564 (1899)
T KOG4659|consen 524 ITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRV 564 (1899)
T ss_pred ccchhheeeecccceeecCCCCeEEEeecceEEEEccCccE
Confidence 2222112355789999999 789999999999999876654
No 13
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.30 E-value=3.7 Score=44.04 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=52.7
Q ss_pred ceeeEEcCCCCeEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCCCCCCCCCCe
Q 006811 308 GGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 387 (630)
Q Consensus 308 GG~L~FGp~DG~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pE 387 (630)
-..+..+| ||.+|+++-.. .+ .........|+|+|+++++. .-+
T Consensus 113 ~ND~~v~p-dG~~wfgt~~~---~~---~~~~~~~~~G~lyr~~p~g~-----------------------------~~~ 156 (307)
T COG3386 113 PNDGVVDP-DGRIWFGDMGY---FD---LGKSEERPTGSLYRVDPDGG-----------------------------VVR 156 (307)
T ss_pred CCceeEcC-CCCEEEeCCCc---cc---cCccccCCcceEEEEcCCCC-----------------------------EEE
Confidence 34577889 99999987663 01 11223467889999998762 113
Q ss_pred EEEeccccceeeeecCCCCCeeEEEeccCCCceeE
Q 006811 388 IWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEV 422 (630)
Q Consensus 388 I~A~GlRNP~r~afD~~~g~~l~~~DvG~d~~EEI 422 (630)
++.-.+.-|-+++|+|.. ..||.+|-..+..-.+
T Consensus 157 l~~~~~~~~NGla~SpDg-~tly~aDT~~~~i~r~ 190 (307)
T COG3386 157 LLDDDLTIPNGLAFSPDG-KTLYVADTPANRIHRY 190 (307)
T ss_pred eecCcEEecCceEECCCC-CEEEEEeCCCCeEEEE
Confidence 333347778899999985 4799999988654333
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.84 E-value=10 Score=39.90 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=22.6
Q ss_pred ccccceeeeecCCCCCeeEEEeccCCCceeEE
Q 006811 392 GLRNPWRCSFDSDRPSYFMCADVGQDVYEEVD 423 (630)
Q Consensus 392 GlRNP~r~afD~~~g~~l~~~DvG~d~~EEIn 423 (630)
|...|..++++|.. .++|+++.+.+...-++
T Consensus 124 ~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 124 GLEGCHSANIDPDN-RTLWVPCLKEDRIRLFT 154 (330)
T ss_pred CCCcccEeEeCCCC-CEEEEeeCCCCEEEEEE
Confidence 45678999999975 47999998876543333
No 15
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.67 E-value=5 Score=43.57 Aligned_cols=157 Identities=20% Similarity=0.311 Sum_probs=92.6
Q ss_pred EEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCE-EEEEEee
Q 006811 153 MVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGR-FFASFNC 230 (630)
Q Consensus 153 ma~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~-~YvsYs~ 230 (630)
..+.|||. .+++.+. .-+|.++++. +|. | +...+.....-.|.-=|+||| |++ .|+.--
T Consensus 150 a~~tP~~~-~l~v~DLG~Dri~~y~~~-dg~---L---------~~~~~~~v~~G~GPRHi~FHp----n~k~aY~v~E- 210 (346)
T COG2706 150 ANFTPDGR-YLVVPDLGTDRIFLYDLD-DGK---L---------TPADPAEVKPGAGPRHIVFHP----NGKYAYLVNE- 210 (346)
T ss_pred eeeCCCCC-EEEEeecCCceEEEEEcc-cCc---c---------ccccccccCCCCCcceEEEcC----CCcEEEEEec-
Confidence 45678883 5677774 5789888864 343 2 111222334557889999999 454 455321
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEEEEEeccCCC-Cccce
Q 006811 231 DKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFN-GHHGG 309 (630)
Q Consensus 231 ~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~Il~~~~P~~-~H~GG 309 (630)
| ...|.-|..++. ..+..++++|..+..-+. .-.+.
T Consensus 211 ------------------------L-----------~stV~v~~y~~~--------~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 211 ------------------------L-----------NSTVDVLEYNPA--------VGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred ------------------------c-----------CCEEEEEEEcCC--------CceEEEeeeeccCccccCCCCcee
Confidence 1 124545555432 233456666654322233 34456
Q ss_pred eeEEcCCCC-eEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCCCCCCCCCCeE
Q 006811 310 QLLFGPTDG-YMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEI 388 (630)
Q Consensus 310 ~L~FGp~DG-~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI 388 (630)
.|...+ || +||++- +..| ++ .+.+||+++.- . ..-++
T Consensus 248 aIhis~-dGrFLYasN-----------Rg~d--sI--~~f~V~~~~g~-------L-------------------~~~~~ 285 (346)
T COG2706 248 AIHISP-DGRFLYASN-----------RGHD--SI--AVFSVDPDGGK-------L-------------------ELVGI 285 (346)
T ss_pred EEEECC-CCCEEEEec-----------CCCC--eE--EEEEEcCCCCE-------E-------------------EEEEE
Confidence 899999 88 699873 2222 22 37888887620 0 12367
Q ss_pred EEeccccceeeeecCCCCCeeEEEec
Q 006811 389 WALGLRNPWRCSFDSDRPSYFMCADV 414 (630)
Q Consensus 389 ~A~GlRNP~r~afD~~~g~~l~~~Dv 414 (630)
|..+-+-|-.|.|++.. +.|+++-.
T Consensus 286 ~~teg~~PR~F~i~~~g-~~Liaa~q 310 (346)
T COG2706 286 TPTEGQFPRDFNINPSG-RFLIAANQ 310 (346)
T ss_pred eccCCcCCccceeCCCC-CEEEEEcc
Confidence 88888889999999974 45665433
No 16
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.24 E-value=1.5 Score=47.77 Aligned_cols=78 Identities=10% Similarity=0.142 Sum_probs=45.0
Q ss_pred EEEEEeeCce--eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeec-CCCCCcCCccceeeCCCCceeeeeeCCC
Q 006811 141 CLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELD-ASSPFADLTDEVHFDTEFGLMGMAFHPN 217 (630)
Q Consensus 141 ~le~va~Gl~--~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~-~~~pflDi~~~V~~~~e~GLLGiAfhPd 217 (630)
..+++++++. .+|++.+|| |||+++. +|+.+.. .++.++. | +.+.+++--..-....+.++.++++.|
T Consensus 63 ~~~vfa~~l~~p~Gi~~~~~G---lyV~~~~-~i~~~~d-~~gdg~a---d~~~~~l~~~~~~~~~~~~~~~~~l~~gp- 133 (367)
T TIGR02604 63 KSNVFAEELSMVTGLAVAVGG---VYVATPP-DILFLRD-KDGDDKA---DGEREVLLSGFGGQINNHHHSLNSLAWGP- 133 (367)
T ss_pred eeEEeecCCCCccceeEecCC---EEEeCCC-eEEEEeC-CCCCCCC---CCccEEEEEccCCCCCcccccccCceECC-
Confidence 5678888887 889999998 9999854 6776642 2233221 1 111111100000001245577888887
Q ss_pred CCCCCEEEEEEee
Q 006811 218 FAKNGRFFASFNC 230 (630)
Q Consensus 218 F~~Ng~~YvsYs~ 230 (630)
+|+||++...
T Consensus 134 ---DG~LYv~~G~ 143 (367)
T TIGR02604 134 ---DGWLYFNHGN 143 (367)
T ss_pred ---CCCEEEeccc
Confidence 6899997653
No 17
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.06 E-value=12 Score=37.35 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=19.9
Q ss_pred eeEEEcCCCCceEEEEe-cCceEEEEEc
Q 006811 151 LNMVAHPDGSNRAFFSN-QEGKIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~e-q~G~V~~~~~ 177 (630)
..+++.|||. +++++. ..|.|+++++
T Consensus 160 ~~~~~s~dg~-~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 160 RFAEFTADGK-ELWVSSEIGGTVSVIDV 186 (300)
T ss_pred cEEEECCCCC-EEEEEcCCCCEEEEEEc
Confidence 5688999985 566664 5899999875
No 18
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.87 E-value=5.4 Score=41.61 Aligned_cols=77 Identities=21% Similarity=0.390 Sum_probs=37.8
Q ss_pred EEEEEe-eCce--eeEEEcCCCCceEEEEe-cCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCC
Q 006811 141 CLEKIG-NGSY--LNMVAHPDGSNRAFFSN-QEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHP 216 (630)
Q Consensus 141 ~le~va-~Gl~--~~ma~~pDGs~RlfV~e-q~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhP 216 (630)
-++++. .|.. =++++..+| ++.|++ |.++|++++++.++ +.++... ...+.+ .+...+..|+=|+|++|
T Consensus 55 vlr~i~l~g~~D~EgI~y~g~~--~~vl~~Er~~~L~~~~~~~~~--~~~~~~~-~~~~~l--~~~~~~N~G~EGla~D~ 127 (248)
T PF06977_consen 55 VLRRIPLDGFGDYEGITYLGNG--RYVLSEERDQRLYIFTIDDDT--TSLDRAD-VQKISL--GFPNKGNKGFEGLAYDP 127 (248)
T ss_dssp EEEEEE-SS-SSEEEEEE-STT--EEEEEETTTTEEEEEEE------TT--EEE-EEEEE-----S---SS--EEEEEET
T ss_pred EEEEEeCCCCCCceeEEEECCC--EEEEEEcCCCcEEEEEEeccc--cccchhh-ceEEec--ccccCCCcceEEEEEcC
Confidence 344443 3333 567788887 565554 78999988875432 1111100 011111 11124678999999997
Q ss_pred CCCCCCEEEEE
Q 006811 217 NFAKNGRFFAS 227 (630)
Q Consensus 217 dF~~Ng~~Yvs 227 (630)
.+++||+.
T Consensus 128 ---~~~~L~v~ 135 (248)
T PF06977_consen 128 ---KTNRLFVA 135 (248)
T ss_dssp ---TTTEEEEE
T ss_pred ---CCCEEEEE
Confidence 57889886
No 19
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.64 E-value=5.1 Score=45.35 Aligned_cols=40 Identities=13% Similarity=0.351 Sum_probs=30.3
Q ss_pred CCCCeEEEeccccceeeeecCCCCCeeEEEeccCCCceeEEEecc
Q 006811 383 GLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITR 427 (630)
Q Consensus 383 ~~~pEI~A~GlRNP~r~afD~~~g~~l~~~DvG~d~~EEIn~I~~ 427 (630)
+...|++|-||.+||.|+|.|. | +||+++-+.. +|-+|..
T Consensus 19 ~f~~~~va~GL~~Pw~maflPD-G-~llVtER~~G---~I~~v~~ 58 (454)
T TIGR03606 19 NFDKKVLLSGLNKPWALLWGPD-N-QLWVTERATG---KILRVNP 58 (454)
T ss_pred CcEEEEEECCCCCceEEEEcCC-C-eEEEEEecCC---EEEEEeC
Confidence 3456899999999999999996 4 6999997432 3555543
No 20
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.83 E-value=11 Score=40.39 Aligned_cols=140 Identities=19% Similarity=0.336 Sum_probs=80.6
Q ss_pred EEEEeeC-ce--eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCce-eeeeeCC
Q 006811 142 LEKIGNG-SY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGL-MGMAFHP 216 (630)
Q Consensus 142 le~va~G-l~--~~ma~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GL-LGiAfhP 216 (630)
++++..+ +. =+|+|+|||+ .||++|- .++|+.+.+.. ..+ .++..+ ..|....+.|+ =|++.|
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~-~~g---~~~~~~------~~~~~~~~~G~PDG~~vD- 221 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDGK-TLYVADTPANRIHRYDLDP-ATG---PIGGRR------GFVDFDEEPGLPDGMAVD- 221 (307)
T ss_pred EEEeecCcEEecCceEECCCCC-EEEEEeCCCCeEEEEecCc-ccC---ccCCcc------eEEEccCCCCCCCceEEe-
Confidence 3344434 55 4699999997 8999997 58999987642 111 111111 13334445555 478888
Q ss_pred CCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEEE
Q 006811 217 NFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRI 296 (630)
Q Consensus 217 dF~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~I 296 (630)
.+|.+|+...-+ | .+|.+|..++ +.|
T Consensus 222 ---adG~lw~~a~~~----------------------------g-------~~v~~~~pdG----------------~l~ 247 (307)
T COG3386 222 ---ADGNLWVAAVWG----------------------------G-------GRVVRFNPDG----------------KLL 247 (307)
T ss_pred ---CCCCEEEecccC----------------------------C-------ceEEEECCCC----------------cEE
Confidence 789998633211 1 2677776432 223
Q ss_pred EEeccCCCCccceeeEEcCCC-CeEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCC
Q 006811 297 FTMGLSFNGHHGGQLLFGPTD-GYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDN 354 (630)
Q Consensus 297 l~~~~P~~~H~GG~L~FGp~D-G~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg 354 (630)
-++.+|. -.-..+.|+-.| ..|||+.-..+.. . ... ...+.|+++++....
T Consensus 248 ~~i~lP~--~~~t~~~FgG~~~~~L~iTs~~~~~~-~--~~~--~~~~~G~lf~~~~~~ 299 (307)
T COG3386 248 GEIKLPV--KRPTNPAFGGPDLNTLYITSARSGMS-R--MLT--ADPLGGGLFSLRLEV 299 (307)
T ss_pred EEEECCC--CCCccceEeCCCcCEEEEEecCCCCC-c--ccc--ccccCceEEEEeccc
Confidence 2334553 111235664413 4799998776542 1 122 356899999987765
No 21
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.30 E-value=8.5 Score=41.35 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=38.0
Q ss_pred eeEEEcCCCCceEEEEec-CceEEEEEcc-CCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQ-EGKIWLATIP-EQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 228 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq-~G~V~~~~~p-~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsY 228 (630)
..|+|+|||. ++||+.. .+.|.++++. ++|.-+.++ ..+- + +. ...++...-+|+++|| ..++||+-
T Consensus 195 Rh~~f~pdg~-~~Yv~~e~s~~v~v~~~~~~~g~~~~~~---~~~~--~-~~-~~~~~~~~~~i~ispd---g~~lyvsn 263 (345)
T PF10282_consen 195 RHLAFSPDGK-YAYVVNELSNTVSVFDYDPSDGSLTEIQ---TIST--L-PE-GFTGENAPAEIAISPD---GRFLYVSN 263 (345)
T ss_dssp EEEEE-TTSS-EEEEEETTTTEEEEEEEETTTTEEEEEE---EEES--C-ET-TSCSSSSEEEEEE-TT---SSEEEEEE
T ss_pred cEEEEcCCcC-EEEEecCCCCcEEEEeecccCCceeEEE---Eeee--c-cc-cccccCCceeEEEecC---CCEEEEEe
Confidence 7899999996 7888865 7889888765 233211111 0110 1 01 1223346789999996 34677754
No 22
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.61 E-value=44 Score=35.87 Aligned_cols=72 Identities=15% Similarity=0.250 Sum_probs=52.0
Q ss_pred ccCCCCcccee-eEEcCCCCeEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCC
Q 006811 300 GLSFNGHHGGQ-LLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPF 378 (630)
Q Consensus 300 ~~P~~~H~GG~-L~FGp~DG~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF 378 (630)
.+|...|+|.+ |--+| -|.+++++= -.|.+.|+|+..+ .|-.|.+|..||-
T Consensus 226 p~P~~~~~gsRriwsdp-ig~~wittw-----------------g~g~l~rfdPs~~----------sW~eypLPgs~ar 277 (353)
T COG4257 226 PQPNALKAGSRRIWSDP-IGRAWITTW-----------------GTGSLHRFDPSVT----------SWIEYPLPGSKAR 277 (353)
T ss_pred cCCCcccccccccccCc-cCcEEEecc-----------------CCceeeEeCcccc----------cceeeeCCCCCCC
Confidence 35667788885 66677 899999832 2456899998652 4899999988762
Q ss_pred CCCCCCCCeEEEeccccceeeeecCCCCCeeEEEeccCCC
Q 006811 379 SEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDV 418 (630)
Q Consensus 379 ~~~~~~~pEI~A~GlRNP~r~afD~~~g~~l~~~DvG~d~ 418 (630)
|+.+-+|..+ ++|.+|-+-+.
T Consensus 278 -----------------pys~rVD~~g--rVW~sea~aga 298 (353)
T COG4257 278 -----------------PYSMRVDRHG--RVWLSEADAGA 298 (353)
T ss_pred -----------------cceeeeccCC--cEEeeccccCc
Confidence 2456778874 79998877754
No 23
>PRK04043 tolB translocation protein TolB; Provisional
Probab=81.74 E-value=94 Score=34.74 Aligned_cols=43 Identities=5% Similarity=-0.025 Sum_probs=27.1
Q ss_pred CCCCCcEEEEEee-CceeeEEEcCCCCceEEEEec---CceEEEEEc
Q 006811 135 NPPQGLCLEKIGN-GSYLNMVAHPDGSNRAFFSNQ---EGKIWLATI 177 (630)
Q Consensus 135 ~~p~G~~le~va~-Gl~~~ma~~pDGs~RlfV~eq---~G~V~~~~~ 177 (630)
.+..|...+.+.. +......++|||...+|++.. ...||++++
T Consensus 174 ~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl 220 (419)
T PRK04043 174 ADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNL 220 (419)
T ss_pred ECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEEC
Confidence 3355666555554 333778899999633666443 356898875
No 24
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=81.47 E-value=87 Score=34.47 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCccce--eeEEcCCC-CeEEEEe-CCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCCC
Q 006811 304 NGHHGG--QLLFGPTD-GYMYFMM-GDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFS 379 (630)
Q Consensus 304 ~~H~GG--~L~FGp~D-G~LYv~~-GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~ 379 (630)
.++-|| .|.+.| | +.|||.+ |.+ .+ ........|..||....
T Consensus 244 ~wrP~g~q~ia~~~-dg~~lyV~~~~~~--~~-------thk~~~~~V~ViD~~t~------------------------ 289 (352)
T TIGR02658 244 GWRPGGWQQVAYHR-ARDRIYLLADQRA--KW-------THKTASRFLFVVDAKTG------------------------ 289 (352)
T ss_pred ccCCCcceeEEEcC-CCCEEEEEecCCc--cc-------cccCCCCEEEEEECCCC------------------------
Confidence 455566 499999 6 5799944 321 00 01123446888887652
Q ss_pred CCCCCCCeEEEeccccceeeeecCCCCC-eeEEEeccCC
Q 006811 380 EDSGLQPEIWALGLRNPWRCSFDSDRPS-YFMCADVGQD 417 (630)
Q Consensus 380 ~~~~~~pEI~A~GlRNP~r~afD~~~g~-~l~~~DvG~d 417 (630)
..-..+..| +.||++++.++. . +||++.-+.+
T Consensus 290 ----kvi~~i~vG-~~~~~iavS~Dg-kp~lyvtn~~s~ 322 (352)
T TIGR02658 290 ----KRLRKIELG-HEIDSINVSQDA-KPLLYALSTGDK 322 (352)
T ss_pred ----eEEEEEeCC-CceeeEEECCCC-CeEEEEeCCCCC
Confidence 112234456 478999999974 4 6787765544
No 25
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.75 E-value=59 Score=34.89 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=24.8
Q ss_pred CcEEEEEeeCce-eeEEEcCCCCceEEEEec-CceEEEEEccCC
Q 006811 139 GLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQ 180 (630)
Q Consensus 139 G~~le~va~Gl~-~~ma~~pDGs~RlfV~eq-~G~V~~~~~p~~ 180 (630)
++..=.+.+|.. ..++.+|||+ ++.+.| .|.|=.++ |..
T Consensus 52 s~~~fpvp~G~ap~dvapapdG~--VWft~qg~gaiGhLd-P~t 92 (353)
T COG4257 52 SSAEFPVPNGSAPFDVAPAPDGA--VWFTAQGTGAIGHLD-PAT 92 (353)
T ss_pred ccceeccCCCCCccccccCCCCc--eEEecCccccceecC-CCC
Confidence 344444555665 7788999995 777777 45565553 443
No 26
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=80.47 E-value=3.3 Score=28.43 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.1
Q ss_pred ccceEEEcCCCcEEEEeCC--eEEE
Q 006811 551 YIYSFGEDNRKDIFILTSD--GVYR 573 (630)
Q Consensus 551 ri~sf~ed~dGeLYvlts~--gIyR 573 (630)
+|.+++.+++|+|||++++ .|.+
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEE
Confidence 6789999999999999974 4544
No 27
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.62 E-value=6.4 Score=34.81 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=48.6
Q ss_pred eeEEcCCC-CeEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCCCCCCCCCCeE
Q 006811 310 QLLFGPTD-GYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEI 388 (630)
Q Consensus 310 ~L~FGp~D-G~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI 388 (630)
.|.+.+ | |.+|++-...-..-.-+...--.....|.+||.|+..+ .-+|
T Consensus 2 dldv~~-~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~-----------------------------~~~v 51 (89)
T PF03088_consen 2 DLDVDQ-DTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK-----------------------------ETTV 51 (89)
T ss_dssp EEEE-T-TT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT-----------------------------EEEE
T ss_pred ceeEec-CCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC-----------------------------eEEE
Confidence 366777 6 99999988753221111111112567899999999873 3479
Q ss_pred EEeccccceeeeecCCCCCeeEEEeccCCC
Q 006811 389 WALGLRNPWRCSFDSDRPSYFMCADVGQDV 418 (630)
Q Consensus 389 ~A~GlRNP~r~afD~~~g~~l~~~DvG~d~ 418 (630)
.+-||+=|-|+++.+.. +.++++|-+...
T Consensus 52 l~~~L~fpNGVals~d~-~~vlv~Et~~~R 80 (89)
T PF03088_consen 52 LLDGLYFPNGVALSPDE-SFVLVAETGRYR 80 (89)
T ss_dssp EEEEESSEEEEEE-TTS-SEEEEEEGGGTE
T ss_pred ehhCCCccCeEEEcCCC-CEEEEEeccCce
Confidence 99999999999999975 478999988754
No 28
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=79.04 E-value=2.7 Score=28.86 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.1
Q ss_pred cccceeeeecCCCCCeeEEEeccCC
Q 006811 393 LRNPWRCSFDSDRPSYFMCADVGQD 417 (630)
Q Consensus 393 lRNP~r~afD~~~g~~l~~~DvG~d 417 (630)
|++|+++++|+. | .||++|.+..
T Consensus 1 f~~P~gvav~~~-g-~i~VaD~~n~ 23 (28)
T PF01436_consen 1 FNYPHGVAVDSD-G-NIYVADSGNH 23 (28)
T ss_dssp BSSEEEEEEETT-S-EEEEEECCCT
T ss_pred CcCCcEEEEeCC-C-CEEEEECCCC
Confidence 689999999964 5 6999997764
No 29
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=78.18 E-value=14 Score=38.56 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=31.2
Q ss_pred eeEEEcCCCCceEEEEecC--ceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQE--GKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 228 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~--G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsY 228 (630)
=++++.|.+ +|+||+... ..|+.+.... ....+.+.....+.+ .. ..-+-+-++++|| ++|.+||.-
T Consensus 121 EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~--~~~~~~~~~~~~~~~--~~---~~~~d~S~l~~~p---~t~~lliLS 189 (248)
T PF06977_consen 121 EGLAYDPKT-NRLFVAKERKPKRLYEVNGFP--GGFDLFVSDDQDLDD--DK---LFVRDLSGLSYDP---RTGHLLILS 189 (248)
T ss_dssp EEEEEETTT-TEEEEEEESSSEEEEEEESTT---SS--EEEE-HHHH---HT-----SS---EEEEET---TTTEEEEEE
T ss_pred EEEEEcCCC-CEEEEEeCCCChhhEEEcccc--Cccceeecccccccc--cc---ceeccccceEEcC---CCCeEEEEE
Confidence 457788776 489998754 4555543200 111111000000110 00 1123367899998 588999973
No 30
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=77.64 E-value=1.2e+02 Score=33.39 Aligned_cols=68 Identities=15% Similarity=0.286 Sum_probs=43.1
Q ss_pred cEEEEEeeCce-eeEEEcCCCCceEEEEec---CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeC
Q 006811 140 LCLEKIGNGSY-LNMVAHPDGSNRAFFSNQ---EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFH 215 (630)
Q Consensus 140 ~~le~va~Gl~-~~ma~~pDGs~RlfV~eq---~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfh 215 (630)
.+++.+.-|.. ..+++.|||. .+||+.- .+.|++++ + .+++.++ .+ ..++.. .++|++
T Consensus 107 ~~~~~~~vG~~P~~~~~~~~~~-~vYV~n~~~~~~~vsvid-~--~t~~~~~------------~~-~vG~~P-~~~a~~ 168 (381)
T COG3391 107 TVLGSIPVGLGPVGLAVDPDGK-YVYVANAGNGNNTVSVID-A--ATNKVTA------------TI-PVGNTP-TGVAVD 168 (381)
T ss_pred ceeeEeeeccCCceEEECCCCC-EEEEEecccCCceEEEEe-C--CCCeEEE------------EE-ecCCCc-ceEEEC
Confidence 34455555655 8899999996 7999997 57888775 2 2222221 11 122222 999999
Q ss_pred CCCCCCCEEEEEE
Q 006811 216 PNFAKNGRFFASF 228 (630)
Q Consensus 216 PdF~~Ng~~YvsY 228 (630)
|+ -.++|+..
T Consensus 169 p~---g~~vyv~~ 178 (381)
T COG3391 169 PD---GNKVYVTN 178 (381)
T ss_pred CC---CCeEEEEe
Confidence 84 45688876
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=76.88 E-value=73 Score=33.72 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.3
Q ss_pred eEEEcCCCCceEEEEecCceEEEEEccC
Q 006811 152 NMVAHPDGSNRAFFSNQEGKIWLATIPE 179 (630)
Q Consensus 152 ~ma~~pDGs~RlfV~eq~G~V~~~~~p~ 179 (630)
.++.+|.-+ .||+.+|.|.||++++-+
T Consensus 129 ~vvlhpnQt-eLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 129 TVVLHPNQT-ELISGDQSGNIRVWDLGE 155 (311)
T ss_pred eEEecCCcc-eEEeecCCCcEEEEEccC
Confidence 467788776 699999999999998744
No 32
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=74.83 E-value=5.1 Score=28.73 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=27.4
Q ss_pred EEEeccccceeeeecCCCCCeeEEEeccCCCceeE
Q 006811 388 IWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEV 422 (630)
Q Consensus 388 I~A~GlRNP~r~afD~~~g~~l~~~DvG~d~~EEI 422 (630)
+..-++..|-+++||+..+ +||.+|......+..
T Consensus 3 ~~~~~~~~~~~la~d~~~~-~lYw~D~~~~~I~~~ 36 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEG-RLYWTDWGLDVIEVA 36 (43)
T ss_pred EEECCCCCcCEEEEeecCC-EEEEEeCCCCEEEEE
Confidence 4566889999999999986 799999999554433
No 33
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=74.59 E-value=43 Score=36.80 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=16.0
Q ss_pred CccceeeEEcCCCCe--EEEEeCCC
Q 006811 305 GHHGGQLLFGPTDGY--MYFMMGDG 327 (630)
Q Consensus 305 ~H~GG~L~FGp~DG~--LYv~~GDg 327 (630)
.|...+|.|.| ||+ ||++.+..
T Consensus 298 G~~~~~iavS~-Dgkp~lyvtn~~s 321 (352)
T TIGR02658 298 GHEIDSINVSQ-DAKPLLYALSTGD 321 (352)
T ss_pred CCceeeEEECC-CCCeEEEEeCCCC
Confidence 35566799999 875 77777653
No 34
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=73.93 E-value=24 Score=39.95 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=68.1
Q ss_pred hhhcc---cchhhhhhcCCCCCCCCeeecCccccc-----CCCCCCCC-CCCcEEEEEeeCce-eeEEEcCCCCceEEEE
Q 006811 97 TEFWQ---SKADFCNAFGGTSKDGSVCFNGEPVTL-----NNTGTPNP-PQGLCLEKIGNGSY-LNMVAHPDGSNRAFFS 166 (630)
Q Consensus 97 ~~~~~---~~~~fc~~~~~~~~~~~~cf~~~~~~~-----~~~~~~~~-p~G~~le~va~Gl~-~~ma~~pDGs~RlfV~ 166 (630)
..||. ++.-.-.+.+-...-.+.||.....+| ...--..+ -.|-|+..+.+|-. .-+-|+||+.|-+|+.
T Consensus 239 vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 239 VKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred EEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe
Confidence 34665 233333344444455677887766654 21111111 23889999988766 6678999997666666
Q ss_pred ecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEeec
Q 006811 167 NQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCD 231 (630)
Q Consensus 167 eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsYs~~ 231 (630)
-.+|+|+.+++ .+++.++ -+-...+..+.|.|-| +|+=||+-+.+
T Consensus 319 ~sd~ki~~wDi---Rs~kvvq-------------eYd~hLg~i~~i~F~~----~g~rFissSDd 363 (503)
T KOG0282|consen 319 GSDKKIRQWDI---RSGKVVQ-------------EYDRHLGAILDITFVD----EGRRFISSSDD 363 (503)
T ss_pred cCCCcEEEEec---cchHHHH-------------HHHhhhhheeeeEEcc----CCceEeeeccC
Confidence 67999999874 3333221 0112346678888765 56666765543
No 35
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.31 E-value=1.1e+02 Score=32.98 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=39.8
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 228 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsY 228 (630)
-.+.+..+|. =+.+-||...+++.++..+ +..+.++ ..-+-| ........||=|+|-+| .+++||+.=
T Consensus 132 E~Ieyig~n~-fvi~dER~~~l~~~~vd~~--t~~~~~~--~~~i~L--~~~~k~N~GfEGlA~d~---~~~~l~~aK 199 (316)
T COG3204 132 ETIEYIGGNQ-FVIVDERDRALYLFTVDAD--TTVISAK--VQKIPL--GTTNKKNKGFEGLAWDP---VDHRLFVAK 199 (316)
T ss_pred hHeEEecCCE-EEEEehhcceEEEEEEcCC--ccEEecc--ceEEec--cccCCCCcCceeeecCC---CCceEEEEE
Confidence 3466777772 2344457899998876432 2222211 111111 11223478999999998 588998864
No 36
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=72.10 E-value=18 Score=41.76 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=54.4
Q ss_pred eeEEcCCCCeEEEEeCCCCCCCCccccccc--CCCCCeeEEEEecCCCCchhhhhhcccCCCccCCCCCCCCCCCCCCCe
Q 006811 310 QLLFGPTDGYMYFMMGDGGGTADPYNFSQN--KKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 387 (630)
Q Consensus 310 ~L~FGp~DG~LYv~~GDgg~~~DP~~~aQn--~~sl~GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pE 387 (630)
.|.+.|.+|.||+++=+.+........+.| .....|.|+|+++++..... +...|..+-+ ..+|-.........
T Consensus 354 gi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~---~~f~~~~~~~-~g~~~~~~~~~~~~ 429 (524)
T PF05787_consen 354 GITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAA---TTFTWELFLV-GGDPTDASGNGSNK 429 (524)
T ss_pred CeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCcccc---ceeEEEEEEE-ecCcccccccccCc
Confidence 377888789999998655422110012233 36789999999988731111 1111211111 11221111111112
Q ss_pred EEEeccccceeeeecCCCCCeeEEEeccCC
Q 006811 388 IWALGLRNPWRCSFDSDRPSYFMCADVGQD 417 (630)
Q Consensus 388 I~A~GlRNP~r~afD~~~g~~l~~~DvG~d 417 (630)
.=..+|.||=.++||+. | +||+.+=+..
T Consensus 430 ~~~~~f~sPDNL~~d~~-G-~LwI~eD~~~ 457 (524)
T PF05787_consen 430 CDDNGFASPDNLAFDPD-G-NLWIQEDGGG 457 (524)
T ss_pred ccCCCcCCCCceEECCC-C-CEEEEeCCCC
Confidence 23456899999999996 5 4776654443
No 37
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=69.90 E-value=5.6 Score=26.42 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=16.4
Q ss_pred CccceEEEcCCCcEEEEeCC
Q 006811 550 GYIYSFGEDNRKDIFILTSD 569 (630)
Q Consensus 550 gri~sf~ed~dGeLYvlts~ 569 (630)
.+|.++.||.+|.|||.|.+
T Consensus 5 n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SCEEEEEE-TTSCEEEEETS
T ss_pred CeEEEEEEcCCcCEEEEeCC
Confidence 36899999999999998853
No 38
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=69.56 E-value=38 Score=42.80 Aligned_cols=73 Identities=18% Similarity=0.340 Sum_probs=42.7
Q ss_pred CCCcEEEEEeeCceeeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCC---CcCCccceeeCCCCceeeee
Q 006811 137 PQGLCLEKIGNGSYLNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSP---FADLTDEVHFDTEFGLMGMA 213 (630)
Q Consensus 137 p~G~~le~va~Gl~~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~p---flDi~~~V~~~~e~GLLGiA 213 (630)
|+|+.+.+.. ....-||+ |+=+.+++|.|..+- |+. .++. ...+ .++|. ++...+ ..++|
T Consensus 477 PkGIa~dk~g------~lYfaD~t-~IR~iD~~giIstli----g~~-~~~~-~p~~C~~~~kl~-~~~leW---PT~La 539 (1899)
T KOG4659|consen 477 PKGIAFDKMG------NLYFADGT-RIRVIDTTGIISTLI----GTT-PDQH-PPRTCAQITKLV-DLQLEW---PTSLA 539 (1899)
T ss_pred CCceeEccCC------cEEEeccc-EEEEeccCceEEEec----cCC-CCcc-Cccccccccchh-heeeec---cccee
Confidence 8898887743 44555887 899999999998752 221 1110 1111 23331 222222 46889
Q ss_pred eCCCCCCCCEEEEEEe
Q 006811 214 FHPNFAKNGRFFASFN 229 (630)
Q Consensus 214 fhPdF~~Ng~~YvsYs 229 (630)
++| -++-+||.-+
T Consensus 540 V~P---mdnsl~Vld~ 552 (1899)
T KOG4659|consen 540 VDP---MDNSLLVLDT 552 (1899)
T ss_pred ecC---CCCeEEEeec
Confidence 998 4677887543
No 39
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=69.49 E-value=20 Score=38.52 Aligned_cols=67 Identities=33% Similarity=0.495 Sum_probs=46.8
Q ss_pred eeEEEcCCCCceEEEEe--------------cCceEEEEEccCCCCCceeeecCCCCCcCC---ccceeeCCCCceeeee
Q 006811 151 LNMVAHPDGSNRAFFSN--------------QEGKIWLATIPEQGLGETMELDASSPFADL---TDEVHFDTEFGLMGMA 213 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~e--------------q~G~V~~~~~p~~gsg~~l~~~~~~pflDi---~~~V~~~~e~GLLGiA 213 (630)
..|+|.||| .|||+- ..|+|..++ + +|+ . ....||++- ..+|++.+-|-..+||
T Consensus 117 ~~l~fgpDG--~LYvs~G~~~~~~~~~~~~~~~G~ilri~-~-dG~--~---p~dnP~~~~~~~~~~i~A~GlRN~~~~~ 187 (331)
T PF07995_consen 117 GGLAFGPDG--KLYVSVGDGGNDDNAQDPNSLRGKILRID-P-DGS--I---PADNPFVGDDGADSEIYAYGLRNPFGLA 187 (331)
T ss_dssp EEEEE-TTS--EEEEEEB-TTTGGGGCSTTSSTTEEEEEE-T-TSS--B----TTSTTTTSTTSTTTEEEE--SEEEEEE
T ss_pred ccccCCCCC--cEEEEeCCCCCcccccccccccceEEEec-c-cCc--C---CCCCccccCCCceEEEEEeCCCccccEE
Confidence 679999999 799974 268888776 3 343 1 245777742 3478889999999999
Q ss_pred eCCCCCCCCEEEEEEe
Q 006811 214 FHPNFAKNGRFFASFN 229 (630)
Q Consensus 214 fhPdF~~Ng~~YvsYs 229 (630)
|||. +|.||+.-.
T Consensus 188 ~d~~---tg~l~~~d~ 200 (331)
T PF07995_consen 188 FDPN---TGRLWAADN 200 (331)
T ss_dssp EETT---TTEEEEEEE
T ss_pred EECC---CCcEEEEcc
Confidence 9984 599998654
No 40
>PTZ00420 coronin; Provisional
Probab=69.45 E-value=1.1e+02 Score=35.74 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=35.7
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCC
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 217 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPd 217 (630)
+.++|+|+..+.|..+..+|.|++++++..+. .+. ....+. .+..+-...+..++|||+
T Consensus 78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~--~~~-~i~~p~-----~~L~gH~~~V~sVaf~P~ 136 (568)
T PTZ00420 78 LDLQFNPCFSEILASGSEDLTIRVWEIPHNDE--SVK-EIKDPQ-----CILKGHKKKISIIDWNPM 136 (568)
T ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc--ccc-ccccce-----EEeecCCCcEEEEEECCC
Confidence 78899998545677777899999998764221 000 000110 112233456789999995
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=68.35 E-value=1.1e+02 Score=29.04 Aligned_cols=58 Identities=28% Similarity=0.429 Sum_probs=37.4
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 229 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsYs 229 (630)
..|.+.|+|. +++++..+|.|+++++.. ++.+. .....+.....++++|+ +.+++..+
T Consensus 181 ~~~~~~~~~~-~l~~~~~~~~i~i~d~~~---~~~~~-------------~~~~~~~~i~~~~~~~~----~~~~~~~~ 238 (289)
T cd00200 181 NSVAFSPDGE-KLLSSSSDGTIKLWDLST---GKCLG-------------TLRGHENGVNSVAFSPD----GYLLASGS 238 (289)
T ss_pred ceEEECCCcC-EEEEecCCCcEEEEECCC---Cceec-------------chhhcCCceEEEEEcCC----CcEEEEEc
Confidence 6789999985 688888899999987421 11110 01122347788999986 55655543
No 42
>PTZ00421 coronin; Provisional
Probab=66.25 E-value=1.1e+02 Score=35.01 Aligned_cols=57 Identities=26% Similarity=0.436 Sum_probs=35.6
Q ss_pred eeEEEcC-CCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCC
Q 006811 151 LNMVAHP-DGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 217 (630)
Q Consensus 151 ~~ma~~p-DGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPd 217 (630)
+.++|.| |+ ++|+.+..+|.|+++++++.+.... ...+. .+..+-+.....++|||+
T Consensus 79 ~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~----~~~~l-----~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 79 IDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQN----ISDPI-----VHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccc----cCcce-----EEecCCCCcEEEEEeCcC
Confidence 7899999 66 3677778899999998765321100 01111 112233566788999984
No 43
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=62.80 E-value=36 Score=38.79 Aligned_cols=68 Identities=24% Similarity=0.479 Sum_probs=44.6
Q ss_pred cEEEEEeeCce--eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCce-eeeeeCC
Q 006811 140 LCLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGL-MGMAFHP 216 (630)
Q Consensus 140 ~~le~va~Gl~--~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GL-LGiAfhP 216 (630)
-.++++..+|. -+|...|||- .+.|+.-.++||++++ ++|..+ +.-..|-|| ++++.||
T Consensus 392 ~e~kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vidi-dngnv~----------------~idkS~~~lItdf~~~~ 453 (668)
T COG4946 392 GEVKRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDI-DNGNVR----------------LIDKSEYGLITDFDWHP 453 (668)
T ss_pred ceEEEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEEEe-cCCCee----------------EecccccceeEEEEEcC
Confidence 44555665555 6788899994 5888888999999987 344321 111234454 8999998
Q ss_pred CCCCCCEEEEEEee
Q 006811 217 NFAKNGRFFASFNC 230 (630)
Q Consensus 217 dF~~Ng~~YvsYs~ 230 (630)
|+++.. |..
T Consensus 454 ----nsr~iA-Yaf 462 (668)
T COG4946 454 ----NSRWIA-YAF 462 (668)
T ss_pred ----CceeEE-Eec
Confidence 566544 543
No 44
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=60.11 E-value=1.7e+02 Score=31.34 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=16.9
Q ss_pred ccce--eeEEcCCCCe-EEEEeCCC
Q 006811 306 HHGG--QLLFGPTDGY-MYFMMGDG 327 (630)
Q Consensus 306 H~GG--~L~FGp~DG~-LYv~~GDg 327 (630)
.|.| .|++.| ||. ||+++=..
T Consensus 145 ~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 145 NNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred CCCCeEEEEECC-CCCEEEEEECcc
Confidence 4555 799999 998 99988665
No 45
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=58.51 E-value=2.8e+02 Score=30.41 Aligned_cols=67 Identities=16% Similarity=0.376 Sum_probs=40.8
Q ss_pred EEEEEeeCce--eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCC
Q 006811 141 CLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNF 218 (630)
Q Consensus 141 ~le~va~Gl~--~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF 218 (630)
.+.+|.+|-. ..+++.|||. .+||+.|+|.|.++++. +.+.+ .+|..+ .+..|+|+.||
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~---~~~~v------------~~i~~G--~~~~~i~~s~D- 88 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLA---TGKVV------------ATIKVG--GNPRGIAVSPD- 88 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETT---SSSEE------------EEEE-S--SEEEEEEE--T-
T ss_pred EEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECC---cccEE------------EEEecC--CCcceEEEcCC-
Confidence 4667776543 5678999995 69999999999998752 22222 234333 35789999863
Q ss_pred CCCCEEEEEE
Q 006811 219 AKNGRFFASF 228 (630)
Q Consensus 219 ~~Ng~~YvsY 228 (630)
..++|+.-
T Consensus 89 --G~~~~v~n 96 (369)
T PF02239_consen 89 --GKYVYVAN 96 (369)
T ss_dssp --TTEEEEEE
T ss_pred --CCEEEEEe
Confidence 44677754
No 46
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=55.13 E-value=2.8e+02 Score=30.57 Aligned_cols=108 Identities=15% Similarity=0.209 Sum_probs=58.5
Q ss_pred hhhcCCCCCCCCeeecCcccc----cCCCCCCCCCCCcEEEEEeeCce-eeEEEcCCCCceEEEEecCceEEEEEccCCC
Q 006811 107 CNAFGGTSKDGSVCFNGEPVT----LNNTGTPNPPQGLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQEGKIWLATIPEQG 181 (630)
Q Consensus 107 c~~~~~~~~~~~~cf~~~~~~----~~~~~~~~~p~G~~le~va~Gl~-~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~g 181 (630)
|++....+...-+|-++...- +.+.+-.--|. ..-.+..|.- +-|+|||+|-=-..|.|-++.|-++...+.
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~--~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~- 223 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA--DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA- 223 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccc--cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-
Confidence 777776666667787776542 11111100000 0111233444 889999999433567788999877654221
Q ss_pred CCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCE-EEE
Q 006811 182 LGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGR-FFA 226 (630)
Q Consensus 182 sg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~-~Yv 226 (630)
.++ ++ +-....-+ ++ .+.++.+.-.|.++| +|+ +|+
T Consensus 224 ~g~-~~--~lQ~i~tl-P~-dF~g~~~~aaIhis~----dGrFLYa 260 (346)
T COG2706 224 VGK-FE--ELQTIDTL-PE-DFTGTNWAAAIHISP----DGRFLYA 260 (346)
T ss_pred Cce-EE--EeeeeccC-cc-ccCCCCceeEEEECC----CCCEEEE
Confidence 122 11 11122222 21 256788999999997 555 555
No 47
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=54.28 E-value=2.2e+02 Score=33.09 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=16.4
Q ss_pred eeeeeeCCCCCCCCEEEEEEeecC
Q 006811 209 LMGMAFHPNFAKNGRFFASFNCDK 232 (630)
Q Consensus 209 LLGiAfhPdF~~Ng~~YvsYs~~~ 232 (630)
+=||++|| .++.+|+..|...
T Consensus 352 pEgi~~~p---~~g~vY~a~T~~~ 372 (524)
T PF05787_consen 352 PEGITVNP---DDGEVYFALTNNS 372 (524)
T ss_pred ccCeeEeC---CCCEEEEEEecCC
Confidence 34788888 4779999998754
No 48
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=52.43 E-value=3.3e+02 Score=29.34 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=21.9
Q ss_pred CcEEEEEeeCc--eeeEEEcCCCCceEEEEec-C--ceEEEEEc
Q 006811 139 GLCLEKIGNGS--YLNMVAHPDGSNRAFFSNQ-E--GKIWLATI 177 (630)
Q Consensus 139 G~~le~va~Gl--~~~ma~~pDGs~RlfV~eq-~--G~V~~~~~ 177 (630)
|-..+++...- .+..+++|||. +|+++.. . ..|+++++
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~ 221 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDL 221 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEEC
Confidence 33344444322 26778999996 4544443 2 46888764
No 49
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=51.46 E-value=1.8e+02 Score=30.41 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=17.0
Q ss_pred CCCCceeeeeeCCCCCCCCEEEEEEe
Q 006811 204 DTEFGLMGMAFHPNFAKNGRFFASFN 229 (630)
Q Consensus 204 ~~e~GLLGiAfhPdF~~Ng~~YvsYs 229 (630)
.+-+-.-.+|||| +|.+|..-+
T Consensus 30 ~dsqairav~fhp----~g~lyavgs 51 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP----AGGLYAVGS 51 (350)
T ss_pred cchhheeeEEecC----CCceEEecc
Confidence 4456678999999 789988655
No 50
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=50.89 E-value=2.6e+02 Score=27.69 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=20.0
Q ss_pred eeEEEcCCCCceEEEEe-cCceEEEEEc
Q 006811 151 LNMVAHPDGSNRAFFSN-QEGKIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~e-q~G~V~~~~~ 177 (630)
..++++|||. ++|++. .+|.|+++++
T Consensus 76 ~~~~~~~~g~-~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 76 ELFALHPNGK-ILYIANEDDNLVTVIDI 102 (300)
T ss_pred cEEEECCCCC-EEEEEcCCCCeEEEEEC
Confidence 4578899984 677775 5789998874
No 51
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=50.84 E-value=1.2e+02 Score=35.91 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=35.7
Q ss_pred CCCCCCCCCCcEEEEEeeCce-eeEEEcCCCCceEEEEecCceEEEEEccCCC
Q 006811 130 NTGTPNPPQGLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQEGKIWLATIPEQG 181 (630)
Q Consensus 130 ~~~~~~~p~G~~le~va~Gl~-~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~g 181 (630)
+++.-.+|.|. +--+.||.. +.+.+.|=..+||-|+..+|+|.++.++.+|
T Consensus 610 l~~PGrLPDgv-~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 610 LNEPGRLPDGV-MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred cCCCCCCCccc-ccccccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 33443446663 334455655 7788888777899999999999888876654
No 52
>PTZ00421 coronin; Provisional
Probab=50.71 E-value=2.5e+02 Score=32.22 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=36.2
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFAS 227 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~Yvs 227 (630)
..++|+|++.+.|+.+..+|.|+++++. .+ +.+ .........+.+++|+|+ |.+.++
T Consensus 129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg--~~~-------------~~l~~h~~~V~sla~spd----G~lLat 185 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAGADMVVNVWDVE-RG--KAV-------------EVIKCHSDQITSLEWNLD----GSLLCT 185 (493)
T ss_pred EEEEeCcCCCCEEEEEeCCCEEEEEECC-CC--eEE-------------EEEcCCCCceEEEEEECC----CCEEEE
Confidence 6789999976556666789999999852 22 211 111122345889999984 554443
No 53
>PRK01742 tolB translocation protein TolB; Provisional
Probab=50.49 E-value=2.9e+02 Score=30.56 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCcEEEEEeeCce--eeEEEcCCCCceEEE-EecC--ceEEEEEc
Q 006811 138 QGLCLEKIGNGSY--LNMVAHPDGSNRAFF-SNQE--GKIWLATI 177 (630)
Q Consensus 138 ~G~~le~va~Gl~--~~ma~~pDGs~RlfV-~eq~--G~V~~~~~ 177 (630)
.|.....+..+-. ...+++|||. +|.. .... ..||++++
T Consensus 192 dg~~~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl 235 (429)
T PRK01742 192 DGFNQFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDL 235 (429)
T ss_pred CCCCceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeC
Confidence 3444444444322 7789999996 4544 4333 46888764
No 54
>PRK02889 tolB translocation protein TolB; Provisional
Probab=50.02 E-value=4e+02 Score=29.54 Aligned_cols=26 Identities=12% Similarity=0.409 Sum_probs=17.2
Q ss_pred eeEEEcCCCCceEEEEe-cC--ceEEEEEc
Q 006811 151 LNMVAHPDGSNRAFFSN-QE--GKIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~e-q~--G~V~~~~~ 177 (630)
...+++|||. +|.++. .. ..||++++
T Consensus 199 ~~p~wSPDG~-~la~~s~~~~~~~I~~~dl 227 (427)
T PRK02889 199 ISPAWSPDGT-KLAYVSFESKKPVVYVHDL 227 (427)
T ss_pred ccceEcCCCC-EEEEEEccCCCcEEEEEEC
Confidence 5678899995 554443 33 35888875
No 55
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=49.00 E-value=77 Score=34.53 Aligned_cols=110 Identities=21% Similarity=0.341 Sum_probs=62.3
Q ss_pred hhhhcc-------cchhhhhhcCCCCCCCCeeecCcccccCCCCCC-----CCCCCcEEEEEeeCce----eeEEEcC--
Q 006811 96 LTEFWQ-------SKADFCNAFGGTSKDGSVCFNGEPVTLNNTGTP-----NPPQGLCLEKIGNGSY----LNMVAHP-- 157 (630)
Q Consensus 96 ~~~~~~-------~~~~fc~~~~~~~~~~~~cf~~~~~~~~~~~~~-----~~p~G~~le~va~Gl~----~~ma~~p-- 157 (630)
...+|+ ...|-|+.-|++..|+..-|=- .+..+.+. ..-.|=|+-.|.++-- ..|-++|
T Consensus 134 F~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVT---a~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW 210 (335)
T TIGR03032 134 FVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVT---ALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW 210 (335)
T ss_pred cccccCCccccccCccCceeecceeeeCCeEEEEE---EeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE
Confidence 345676 3678899999998887644411 12111110 1123445555554421 5566776
Q ss_pred -CCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEeecC
Q 006811 158 -DGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCDK 232 (630)
Q Consensus 158 -DGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsYs~~~ 232 (630)
|| ||||.+. .|+|..++ +++|.-+ +...=.+-.-||+|+ ..++||+-|...
T Consensus 211 hdg--rLwvldsgtGev~~vD-~~~G~~e----------------~Va~vpG~~rGL~f~-----G~llvVgmSk~R 263 (335)
T TIGR03032 211 YQG--KLWLLNSGRGELGYVD-PQAGKFQ----------------PVAFLPGFTRGLAFA-----GDFAFVGLSKLR 263 (335)
T ss_pred eCC--eEEEEECCCCEEEEEc-CCCCcEE----------------EEEECCCCCccccee-----CCEEEEEecccc
Confidence 56 7888886 68888775 3334311 112122334678887 667889888654
No 56
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=48.61 E-value=92 Score=35.18 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=34.7
Q ss_pred CCCCCCCeeecCcccccCCCCCCCCCCCcEEEEEee-C--ce-eeEEEcCCCCceEEEEec-CceEEEEEcc
Q 006811 112 GTSKDGSVCFNGEPVTLNNTGTPNPPQGLCLEKIGN-G--SY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIP 178 (630)
Q Consensus 112 ~~~~~~~~cf~~~~~~~~~~~~~~~p~G~~le~va~-G--l~-~~ma~~pDGs~RlfV~eq-~G~V~~~~~p 178 (630)
-+++|+.+||.+... |-++.++.. + .. ...+||||| -+|.+-- +|.|+++++.
T Consensus 320 sAs~d~~w~Fsd~~~------------g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 320 SASNDGTWAFSDISS------------GSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred EecCCceEEEEEccC------------CcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceEEEEEcC
Confidence 345666666665432 445555443 2 22 789999999 5777664 8999999864
No 57
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=48.18 E-value=45 Score=37.28 Aligned_cols=66 Identities=24% Similarity=0.493 Sum_probs=46.4
Q ss_pred eeEEEcCCCCceEEEEec--------------CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCC
Q 006811 151 LNMVAHPDGSNRAFFSNQ--------------EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHP 216 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq--------------~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhP 216 (630)
-.++|.||| +|||+-- .|+|+..+ ..+. +. ...||-+ .+|++.+.|..-|+++||
T Consensus 180 ~~l~f~pDG--~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~--~a~~---~~--~d~p~~~--~~i~s~G~RN~qGl~w~P 248 (399)
T COG2133 180 GRLVFGPDG--KLYVTTGSNGDPALAQDNVSLAGKVLRID--RAGI---IP--ADNPFPN--SEIWSYGHRNPQGLAWHP 248 (399)
T ss_pred ccEEECCCC--cEEEEeCCCCCcccccCccccccceeeec--cCcc---cc--cCCCCCC--cceEEeccCCccceeecC
Confidence 568999999 6998752 46666543 2221 22 2345555 578999999999999999
Q ss_pred CCCCCCEEEEEEee
Q 006811 217 NFAKNGRFFASFNC 230 (630)
Q Consensus 217 dF~~Ng~~YvsYs~ 230 (630)
..|.+|+.-..
T Consensus 249 ---~tg~Lw~~e~g 259 (399)
T COG2133 249 ---VTGALWTTEHG 259 (399)
T ss_pred ---CCCcEEEEecC
Confidence 47899886653
No 58
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=48.10 E-value=1.8e+02 Score=33.15 Aligned_cols=136 Identities=18% Similarity=0.358 Sum_probs=69.7
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceee--ee--eCCCCCC----CC
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMG--MA--FHPNFAK----NG 222 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLG--iA--fhPdF~~----Ng 222 (630)
..+.|.-||. +|++..-.|.||++++-. ...+ -.+.+|+++-| ++ .|++|-. .|
T Consensus 348 ~~~~fsSdsk-~l~~~~~~GeV~v~nl~~---~~~~--------------~rf~D~G~v~gts~~~S~ng~ylA~GS~~G 409 (514)
T KOG2055|consen 348 SDFTFSSDSK-ELLASGGTGEVYVWNLRQ---NSCL--------------HRFVDDGSVHGTSLCISLNGSYLATGSDSG 409 (514)
T ss_pred eeEEEecCCc-EEEEEcCCceEEEEecCC---cceE--------------EEEeecCccceeeeeecCCCceEEeccCcc
Confidence 4577888884 788888899999998622 1111 11234555533 33 4443321 22
Q ss_pred EEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEE-------
Q 006811 223 RFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRR------- 295 (630)
Q Consensus 223 ~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~------- 295 (630)
.+=| |..+ +|+-..+-.|.|. --+....|.-++.+.++.-.+.++......+|.
T Consensus 410 iVNI-Yd~~-----------s~~~s~~PkPik~-------~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 410 IVNI-YDGN-----------SCFASTNPKPIKT-------VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eEEE-eccc-----------hhhccCCCCchhh-------hhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 2222 1111 1222222222221 112345677777776655555556665555553
Q ss_pred EEEeccCCC---CccceeeEEcCCCCeEEEEeCC
Q 006811 296 IFTMGLSFN---GHHGGQLLFGPTDGYMYFMMGD 326 (630)
Q Consensus 296 Il~~~~P~~---~H~GG~L~FGp~DG~LYv~~GD 326 (630)
+|. ..|.. .|+--.|.|+|.-|+| ++|.
T Consensus 471 VFs-NfP~~n~~vg~vtc~aFSP~sG~l--AvGN 501 (514)
T KOG2055|consen 471 VFS-NFPTSNTKVGHVTCMAFSPNSGYL--AVGN 501 (514)
T ss_pred eec-cCCCCCCcccceEEEEecCCCceE--Eeec
Confidence 332 33432 4777789999955554 5554
No 59
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=47.74 E-value=74 Score=22.12 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.5
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLAT 176 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~ 176 (630)
..|+++|++. .+..+..+|.|++++
T Consensus 15 ~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 15 NSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEEEecccc-cceeeCCCCEEEEEC
Confidence 7899999974 677777899999863
No 60
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.05 E-value=1.9e+02 Score=32.08 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=59.7
Q ss_pred CCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEeecCCCCCC
Q 006811 158 DGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPG 237 (630)
Q Consensus 158 DGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsYs~~~~~~~~ 237 (630)
||.+-++...|++.|++++++. +.-| + ...+-+.+.-|+|||| -|++-++-..++
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~t---g~cL--------~-----tL~ghdnwVr~~af~p----~Gkyi~ScaDDk----- 356 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVST---GMCL--------F-----TLVGHDNWVRGVAFSP----GGKYILSCADDK----- 356 (406)
T ss_pred CCccEEEeecccceEEEEeccC---CeEE--------E-----EEecccceeeeeEEcC----CCeEEEEEecCC-----
Confidence 4445677778899999988642 2221 1 1234567889999998 677666544321
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEEEEEeccCCCCccceeeEEcCCC
Q 006811 238 CAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFNGHHGGQLLFGPTD 317 (630)
Q Consensus 238 ~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~Il~~~~P~~~H~GG~L~FGp~D 317 (630)
.+||..++. ++-+ ..++...|.--.|.|..
T Consensus 357 -----------------------------tlrvwdl~~------------------~~cm-k~~~ah~hfvt~lDfh~-- 386 (406)
T KOG0295|consen 357 -----------------------------TLRVWDLKN------------------LQCM-KTLEAHEHFVTSLDFHK-- 386 (406)
T ss_pred -----------------------------cEEEEEecc------------------ceee-eccCCCcceeEEEecCC--
Confidence 257755542 1111 12445568888899965
Q ss_pred CeEEEEeCCC
Q 006811 318 GYMYFMMGDG 327 (630)
Q Consensus 318 G~LYv~~GDg 327 (630)
..+||.+|.-
T Consensus 387 ~~p~VvTGsV 396 (406)
T KOG0295|consen 387 TAPYVVTGSV 396 (406)
T ss_pred CCceEEeccc
Confidence 5789999974
No 61
>PRK01029 tolB translocation protein TolB; Provisional
Probab=46.39 E-value=4.2e+02 Score=29.57 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=18.7
Q ss_pred eeEEEcCCCCceEEEEecCc--eEEEEEc
Q 006811 151 LNMVAHPDGSNRAFFSNQEG--KIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G--~V~~~~~ 177 (630)
...+++|||..=+|+.++.| +||++.+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 56789999963355566777 5777654
No 62
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=46.27 E-value=14 Score=39.97 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=24.1
Q ss_pred eEEEeccccceeeeecCCCCCeeEEEeccCCC
Q 006811 387 EIWALGLRNPWRCSFDSDRPSYFMCADVGQDV 418 (630)
Q Consensus 387 EI~A~GlRNP~r~afD~~~g~~l~~~DvG~d~ 418 (630)
++---.|+|||++++.|.. .+|++|+|-+.
T Consensus 16 ~~tDp~L~N~WGia~~p~~--~~WVadngT~~ 45 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRPGG--PFWVANTGTGT 45 (336)
T ss_pred cccCccccccceeEecCCC--CEEEecCCcce
Confidence 3444568999999999975 49999998864
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=45.81 E-value=2.4e+02 Score=31.70 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=36.7
Q ss_pred eeEEEcCCCCceEEEEe-cCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 006811 151 LNMVAHPDGSNRAFFSN-QEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 229 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~e-q~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsYs 229 (630)
..++|.|||. .+++- .+++|+++++.+++ ..+ ++..+-......++|+| .+.+.++=+
T Consensus 207 ~~~~fs~d~~--~l~s~s~D~tiriwd~~~~~--~~~-------------~~l~gH~~~v~~~~f~p----~g~~i~Sgs 265 (456)
T KOG0266|consen 207 SDVAFSPDGS--YLLSGSDDKTLRIWDLKDDG--RNL-------------KTLKGHSTYVTSVAFSP----DGNLLVSGS 265 (456)
T ss_pred eeeEECCCCc--EEEEecCCceEEEeeccCCC--eEE-------------EEecCCCCceEEEEecC----CCCEEEEec
Confidence 6789999994 44443 58899998864332 222 22223345568999998 456666554
Q ss_pred e
Q 006811 230 C 230 (630)
Q Consensus 230 ~ 230 (630)
.
T Consensus 266 ~ 266 (456)
T KOG0266|consen 266 D 266 (456)
T ss_pred C
Confidence 3
No 64
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=44.86 E-value=63 Score=34.77 Aligned_cols=59 Identities=27% Similarity=0.571 Sum_probs=33.8
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFA 226 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~Yv 226 (630)
-+|.|.||| +++++.|.|.|+.-+.++ +.+.. .+++.++. ...-|+|+||+.|+ +.+|+
T Consensus 190 q~~gf~~~~--~lw~~~~Gg~~~~s~~~~--~~~~w----~~~~~~~~-----~~~~~~ld~a~~~~----~~~wa 248 (302)
T PF14870_consen 190 QSMGFSPDG--NLWMLARGGQIQFSDDPD--DGETW----SEPIIPIK-----TNGYGILDLAYRPP----NEIWA 248 (302)
T ss_dssp EEEEE-TTS---EEEEETTTEEEEEE-TT--EEEEE-------B-TTS-----S--S-EEEEEESSS----S-EEE
T ss_pred hhceecCCC--CEEEEeCCcEEEEccCCC--Ccccc----ccccCCcc-----cCceeeEEEEecCC----CCEEE
Confidence 579999998 699999999999865332 23332 23444431 24568999999863 45654
No 65
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=44.74 E-value=4.8e+02 Score=29.29 Aligned_cols=69 Identities=25% Similarity=0.448 Sum_probs=45.0
Q ss_pred CcEEEEEeeCce---eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeC
Q 006811 139 GLCLEKIGNGSY---LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFH 215 (630)
Q Consensus 139 G~~le~va~Gl~---~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfh 215 (630)
+.++.++. |-. ...+|+|+| ++++-+.-++.|+++++. . ++.+ ++...-..+..+++|.
T Consensus 236 ~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~-~--~~~~-------------~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 236 GRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR-T--GECV-------------RKLKGHSDGISGLAFS 297 (456)
T ss_pred CeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEecc-C--CeEE-------------EeeeccCCceEEEEEC
Confidence 35555554 544 789999999 567777789999999853 2 2222 2333344588999998
Q ss_pred CCCCCCCEEEEEEe
Q 006811 216 PNFAKNGRFFASFN 229 (630)
Q Consensus 216 PdF~~Ng~~YvsYs 229 (630)
| ++.+.++-+
T Consensus 298 ~----d~~~l~s~s 307 (456)
T KOG0266|consen 298 P----DGNLLVSAS 307 (456)
T ss_pred C----CCCEEEEcC
Confidence 7 455555444
No 66
>PRK03629 tolB translocation protein TolB; Provisional
Probab=44.28 E-value=4.9e+02 Score=28.93 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=17.0
Q ss_pred eeEEEcCCCCceEEEEecC--ceEEEEEc
Q 006811 151 LNMVAHPDGSNRAFFSNQE--GKIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~--G~V~~~~~ 177 (630)
...+++|||..=+|+.... ..||++++
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl 230 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTL 230 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEEC
Confidence 6788999996323444333 36777764
No 67
>PRK02889 tolB translocation protein TolB; Provisional
Probab=43.68 E-value=4e+02 Score=29.49 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=16.8
Q ss_pred eeEEEcCCCCceEEEEecCce--EEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQEGK--IWLAT 176 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~--V~~~~ 176 (630)
....++|||..-+|+.++.|. ||+++
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred cCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 567899999744556666664 55544
No 68
>PRK04792 tolB translocation protein TolB; Provisional
Probab=42.10 E-value=5.4e+02 Score=28.83 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=17.4
Q ss_pred eeEEEcCCCCceEEEEecCc--eEEEEEc
Q 006811 151 LNMVAHPDGSNRAFFSNQEG--KIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G--~V~~~~~ 177 (630)
...+++|||..=+|+..+.| +||++++
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl 249 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDI 249 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEEC
Confidence 45789999973334444444 5888764
No 69
>PRK00178 tolB translocation protein TolB; Provisional
Probab=41.66 E-value=5.1e+02 Score=28.38 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCCcEEEEEeeCce--eeEEEcCCCCceE-EEEecC--ceEEEEEc
Q 006811 137 PQGLCLEKIGNGSY--LNMVAHPDGSNRA-FFSNQE--GKIWLATI 177 (630)
Q Consensus 137 p~G~~le~va~Gl~--~~ma~~pDGs~Rl-fV~eq~--G~V~~~~~ 177 (630)
..|-....+..+-. ...+++|||. +| |+..+. ..||++++
T Consensus 186 ~~g~~~~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l 230 (430)
T PRK00178 186 YDGARAVTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNL 230 (430)
T ss_pred CCCCCceEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEEC
Confidence 34444445543322 6778999996 55 555444 36888774
No 70
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=41.61 E-value=3e+02 Score=31.09 Aligned_cols=53 Identities=26% Similarity=0.467 Sum_probs=32.3
Q ss_pred eeEEEcCCCCceEEEEec---CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQ---EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFAS 227 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq---~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~Yvs 227 (630)
-.++|+|||| |..+-- -|+||=+. .| +- .-||+. --.-.++++|.| ||+.-++
T Consensus 307 ~~iaf~~DGS--L~~tGGlD~~~RvWDlR---tg--r~------im~L~g-------H~k~I~~V~fsP----NGy~lAT 362 (459)
T KOG0272|consen 307 FSIAFQPDGS--LAATGGLDSLGRVWDLR---TG--RC------IMFLAG-------HIKEILSVAFSP----NGYHLAT 362 (459)
T ss_pred ceeEecCCCc--eeeccCccchhheeecc---cC--cE------EEEecc-------cccceeeEeECC----CceEEee
Confidence 4689999996 666543 58888542 12 21 123332 123368999998 8876553
No 71
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=40.17 E-value=2.4e+02 Score=32.19 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=22.9
Q ss_pred eEEEcCCCCceEEEEecCceEEEEEc
Q 006811 152 NMVAHPDGSNRAFFSNQEGKIWLATI 177 (630)
Q Consensus 152 ~ma~~pDGs~RlfV~eq~G~V~~~~~ 177 (630)
...|+|+|+.|+|++.+.-.++.+++
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeec
Confidence 46789999889999999999999886
No 72
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=38.64 E-value=3.3e+02 Score=30.27 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=29.0
Q ss_pred eEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEee
Q 006811 162 RAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNC 230 (630)
Q Consensus 162 RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~Ng~~YvsYs~ 230 (630)
||.|.-+ +.||++++.+ -+.|. .| +.......|++.+.++ +.--|+.|-.
T Consensus 99 RLvV~Le-e~IyIydI~~---MklLh--------TI--~t~~~n~~gl~AlS~n-----~~n~ylAyp~ 148 (391)
T KOG2110|consen 99 RLVVCLE-ESIYIYDIKD---MKLLH--------TI--ETTPPNPKGLCALSPN-----NANCYLAYPG 148 (391)
T ss_pred eEEEEEc-ccEEEEeccc---ceeeh--------hh--hccCCCccceEeeccC-----CCCceEEecC
Confidence 7777654 3499887632 22221 11 1112467899988887 4446888863
No 73
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=37.64 E-value=3.3e+02 Score=32.05 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred eeeeCCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCC
Q 006811 211 GMAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKP 290 (630)
Q Consensus 211 GiAfhPdF~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~ 290 (630)
+|++|| .+|.+|+.+|....... |...-...|+.. .|.||...... -..+.
T Consensus 421 ~i~~~p---~~g~Vy~~lTNn~~r~~--------------~~aNpr~~n~~G------~I~r~~p~~~d------~t~~~ 471 (616)
T COG3211 421 WIAVNP---GTGEVYFTLTNNGKRSD--------------DAANPRAKNGYG------QIVRWIPATGD------HTDTK 471 (616)
T ss_pred ceeecC---CcceEEEEeCCCCcccc--------------ccCCCccccccc------ceEEEecCCCC------ccCcc
Q ss_pred CCcEEEEEeccCCCCcc-------------ceeeEEcCCCCeEEEEeCCCCCCCCccccccc----CCCCCeeEEEE
Q 006811 291 SEVRRIFTMGLSFNGHH-------------GGQLLFGPTDGYMYFMMGDGGGTADPYNFSQN----KKSLLGKITRL 350 (630)
Q Consensus 291 ~~~~~Il~~~~P~~~H~-------------GG~L~FGp~DG~LYv~~GDgg~~~DP~~~aQn----~~sl~GKILRI 350 (630)
-..+..++.+.|...-. --.|.|+| .|.|+|.+=-.+....-+...+- ...-.|+|-|.
T Consensus 472 ftWdlF~~aG~~~~~~~~~~~~~~~~~f~~PDnl~fD~-~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf 547 (616)
T COG3211 472 FTWDLFVEAGNPSVLEGGASANINANWFNSPDNLAFDP-WGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRF 547 (616)
T ss_pred ceeeeeeecCCccccccccccCcccccccCCCceEECC-CCCEEEEecCCCCccCcccccccccccCCCccceeeee
No 74
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=37.22 E-value=3.2e+02 Score=26.97 Aligned_cols=84 Identities=20% Similarity=0.349 Sum_probs=0.0
Q ss_pred CcEEEEEeeCceeeEEEcCCCCceEEEE----ecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeee
Q 006811 139 GLCLEKIGNGSYLNMVAHPDGSNRAFFS----NQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAF 214 (630)
Q Consensus 139 G~~le~va~Gl~~~ma~~pDGs~RlfV~----eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAf 214 (630)
+-.+..+.++-.-.+.++|+| +++++ ...|.|.++++.+. ..+..........+++
T Consensus 92 ~~~i~~~~~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~------------------~~i~~~~~~~~t~~~W 151 (194)
T PF08662_consen 92 GKKIFSFGTQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKK------------------KKISTFEHSDATDVEW 151 (194)
T ss_pred ccEeEeecCCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCC------------------EEeeccccCcEEEEEE
Q ss_pred CCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEE
Q 006811 215 HPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYT 274 (630)
Q Consensus 215 hPdF~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~ 274 (630)
+| +|+.+++.+... ++..||| .+|..|.
T Consensus 152 sP----dGr~~~ta~t~~---------------------r~~~dng-------~~Iw~~~ 179 (194)
T PF08662_consen 152 SP----DGRYLATATTSP---------------------RLRVDNG-------FKIWSFQ 179 (194)
T ss_pred cC----CCCEEEEEEecc---------------------ceecccc-------EEEEEec
No 75
>PRK04922 tolB translocation protein TolB; Provisional
Probab=35.09 E-value=6.6e+02 Score=27.78 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=18.0
Q ss_pred eeEEEcCCCCceEEEEecCce--EEEEEc
Q 006811 151 LNMVAHPDGSNRAFFSNQEGK--IWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~--V~~~~~ 177 (630)
...+++|||..-+|+.++.|. ||++++
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 567889999643455666665 777653
No 76
>PRK04922 tolB translocation protein TolB; Provisional
Probab=34.28 E-value=6.8e+02 Score=27.68 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=21.9
Q ss_pred CcEEEEEeeCce--eeEEEcCCCCceEEEEecC--ceEEEEEc
Q 006811 139 GLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQE--GKIWLATI 177 (630)
Q Consensus 139 G~~le~va~Gl~--~~ma~~pDGs~RlfV~eq~--G~V~~~~~ 177 (630)
|-....+.++-. ...+++|||..=+|+.... ..||++++
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl 235 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDL 235 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEEC
Confidence 444444444322 6678899996333343333 46888764
No 77
>PRK05137 tolB translocation protein TolB; Provisional
Probab=33.49 E-value=6.9e+02 Score=27.57 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=23.7
Q ss_pred CCcEEEEEeeCce--eeEEEcCCCCceEEEEec--CceEEEEEc
Q 006811 138 QGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ--EGKIWLATI 177 (630)
Q Consensus 138 ~G~~le~va~Gl~--~~ma~~pDGs~RlfV~eq--~G~V~~~~~ 177 (630)
.|-..+.+..+-. ...+++|||..=+|+..+ ...||++++
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEEC
Confidence 3444445544332 678889999632344443 357888874
No 78
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=33.23 E-value=2.3e+02 Score=31.09 Aligned_cols=99 Identities=25% Similarity=0.426 Sum_probs=0.0
Q ss_pred eEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceee----eeeCCCCCCCCEEEEE
Q 006811 152 NMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMG----MAFHPNFAKNGRFFAS 227 (630)
Q Consensus 152 ~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLG----iAfhPdF~~Ng~~Yvs 227 (630)
.+.|.|||+ -+++--.--|++.+..-.|-.-... .+.+.++.|+.| +|||| .+...+..
T Consensus 163 sL~Fs~DGe--qlfaGykrcirvFdt~RpGr~c~vy------------~t~~~~k~gq~giisc~a~sP---~~~~~~a~ 225 (406)
T KOG2919|consen 163 SLQFSPDGE--QLFAGYKRCIRVFDTSRPGRDCPVY------------TTVTKGKFGQKGIISCFAFSP---MDSKTLAV 225 (406)
T ss_pred eEEecCCCC--eEeecccceEEEeeccCCCCCCcch------------hhhhcccccccceeeeeeccC---CCCcceee
Q ss_pred EeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEEEEEeccCCCCcc
Q 006811 228 FNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFNGHH 307 (630)
Q Consensus 228 Ys~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~Il~~~~P~~~H~ 307 (630)
-+... ++--|.-.+- +.+...+ .|.
T Consensus 226 gsY~q------------------------------------~~giy~~~~~---------------~pl~llg----gh~ 250 (406)
T KOG2919|consen 226 GSYGQ------------------------------------RVGIYNDDGR---------------RPLQLLG----GHG 250 (406)
T ss_pred ecccc------------------------------------eeeeEecCCC---------------Cceeeec----ccC
Q ss_pred ce--eeEEcCCCC-eEEEE
Q 006811 308 GG--QLLFGPTDG-YMYFM 323 (630)
Q Consensus 308 GG--~L~FGp~DG-~LYv~ 323 (630)
|| +|.|++ || +||..
T Consensus 251 gGvThL~~~e-dGn~lfsG 268 (406)
T KOG2919|consen 251 GGVTHLQWCE-DGNKLFSG 268 (406)
T ss_pred CCeeeEEecc-CcCeeccc
No 79
>PRK04792 tolB translocation protein TolB; Provisional
Probab=31.90 E-value=7.7e+02 Score=27.60 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.3
Q ss_pred eeEEEcCCCCceEE-EEecCce--EEEEEc
Q 006811 151 LNMVAHPDGSNRAF-FSNQEGK--IWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~Rlf-V~eq~G~--V~~~~~ 177 (630)
...+++|||. +++ +.+++|. ||++++
T Consensus 265 ~~~~wSPDG~-~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 265 GAPRFSPDGK-KLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCeeECCCCC-EEEEEEeCCCCeEEEEEEC
Confidence 4678999997 454 4566774 887764
No 80
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=31.10 E-value=78 Score=23.19 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=20.4
Q ss_pred CCeEEEEeCCCCCCCCcccccccCCCCCeeEEEEecCC
Q 006811 317 DGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDN 354 (630)
Q Consensus 317 DG~LYv~~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg 354 (630)
||.||-++.-++. .-.|.|.||++++
T Consensus 1 dg~lYGTT~~GG~------------~~~GTvf~~~~~g 26 (34)
T TIGR03803 1 GGTLYGTTSGGGA------------SGFGTLYRLSTAG 26 (34)
T ss_pred CCcEEEEcccCCC------------CCceeEEEEcCCC
Confidence 6889999975543 2469999999987
No 81
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=30.18 E-value=1.1e+03 Score=28.85 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=55.9
Q ss_pred eeEEcCCCCeEEEEeCCCCCCCCccc--ccccCCCCCeeEEEEecCCCCchh--hhhhcccCCCccCCCCCCCCCC---C
Q 006811 310 QLLFGPTDGYMYFMMGDGGGTADPYN--FSQNKKSLLGKITRLDVDNIPSAA--EIEKLGLWGSYSIPKDNPFSED---S 382 (630)
Q Consensus 310 ~L~FGp~DG~LYv~~GDgg~~~DP~~--~aQn~~sl~GKILRIdvDg~p~~~--~~~~~~~~g~YsIP~DNPF~~~---~ 382 (630)
.+.++++.|.+|+.+|.... |-+. ..-..+...+.|+-||+++....= .......| -|.+|..--.++- .
T Consensus 379 ~~s~D~~~glvy~ptGn~~p--d~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~W-D~D~~~~p~L~d~~~~~ 455 (764)
T TIGR03074 379 VASYDEKLGLVYLPMGNQTP--DQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLW-DMDVPAQPSLVDLPDAD 455 (764)
T ss_pred ceEEcCCCCeEEEeCCCccc--cccCCccccCcccccceEEEEeCCCCceEEEecccCCccc-cccccCCceEEeeecCC
Confidence 57889977999999998653 1111 111124578999999997510000 00000111 1333321111111 2
Q ss_pred CCCCeEEEeccccceeeeecCCCCCeeEE
Q 006811 383 GLQPEIWALGLRNPWRCSFDSDRPSYFMC 411 (630)
Q Consensus 383 ~~~pEI~A~GlRNP~r~afD~~~g~~l~~ 411 (630)
+....+...+-+|-+-.++|+.||+.||-
T Consensus 456 G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 456 GTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 22334778888999999999999986664
No 82
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=29.92 E-value=73 Score=23.82 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.9
Q ss_pred eeEEEEecCCCCchhhhhhcccCCCccCCCCCCCCCCCCCCCeEEEeccccceeeeecC
Q 006811 345 GKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDS 403 (630)
Q Consensus 345 GKILRIdvDg~p~~~~~~~~~~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~afD~ 403 (630)
-+|.|.+.||. .+..|..-.+.+|.++++|+
T Consensus 12 ~~I~~a~~dGs----------------------------~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 12 PSIERANLDGS----------------------------NRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEEETTST----------------------------SEEEEEESSTSSEEEEEEET
T ss_pred cEEEEEECCCC----------------------------CeEEEEECCCCCcCEEEECC
Confidence 58999999993 14578899999999999985
No 83
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=29.16 E-value=68 Score=29.72 Aligned_cols=20 Identities=10% Similarity=0.451 Sum_probs=15.1
Q ss_pred EEcCCCcEEEEeC-CeEEEEe
Q 006811 556 GEDNRKDIFILTS-DGVYRVV 575 (630)
Q Consensus 556 ~ed~dGeLYvlts-~gIyRiv 575 (630)
+..++|.|||.++ +.+-|+.
T Consensus 12 ~~~E~rKLYVVDSiNdLnkLn 32 (128)
T PF15145_consen 12 GIPEDRKLYVVDSINDLNKLN 32 (128)
T ss_pred CCCCcCeEEEEecccchhhhc
Confidence 3478999999998 5566665
No 84
>PRK01029 tolB translocation protein TolB; Provisional
Probab=29.12 E-value=8.4e+02 Score=27.18 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCCcEEEEEeeCce--eeEEEcCCCCce--EEEEecCc--eEEEEEc
Q 006811 137 PQGLCLEKIGNGSY--LNMVAHPDGSNR--AFFSNQEG--KIWLATI 177 (630)
Q Consensus 137 p~G~~le~va~Gl~--~~ma~~pDGs~R--lfV~eq~G--~V~~~~~ 177 (630)
..|-....+..+-. ..=+|+|||.+. +|++.+.| +||+.++
T Consensus 172 ~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l 218 (428)
T PRK01029 172 YDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSL 218 (428)
T ss_pred CCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEEC
Confidence 33444444443322 455899999743 34777765 5888765
No 85
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=28.85 E-value=3.3e+02 Score=33.51 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.4
Q ss_pred CCeEEEeccccceeeeecCCCCCeeEEEeccCCC
Q 006811 385 QPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDV 418 (630)
Q Consensus 385 ~pEI~A~GlRNP~r~afD~~~g~~l~~~DvG~d~ 418 (630)
+.-+|..+|-||-.+..|+.++ .||.+|=.++.
T Consensus 1102 rkvLf~tdLVNPR~iv~D~~rg-nLYwtDWnRen 1134 (1289)
T KOG1214|consen 1102 RKVLFYTDLVNPRAIVVDPIRG-NLYWTDWNREN 1134 (1289)
T ss_pred eeEEEeecccCcceEEeecccC-ceeeccccccC
Confidence 4457889999999999999988 59998876654
No 86
>PTZ00420 coronin; Provisional
Probab=28.43 E-value=8.4e+02 Score=28.73 Aligned_cols=26 Identities=12% Similarity=-0.073 Sum_probs=20.2
Q ss_pred eeEEEcCCCCceEE-EEecCceEEEEEc
Q 006811 151 LNMVAHPDGSNRAF-FSNQEGKIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~Rlf-V~eq~G~V~~~~~ 177 (630)
..++|+|++. .++ .+..+|.|+++++
T Consensus 129 ~sVaf~P~g~-~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 129 SIIDWNPMNY-YIMCSSGFDSFVNIWDI 155 (568)
T ss_pred EEEEECCCCC-eEEEEEeCCCeEEEEEC
Confidence 6789999985 344 4567999999985
No 87
>PRK03629 tolB translocation protein TolB; Provisional
Probab=28.39 E-value=8.5e+02 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=18.4
Q ss_pred eeEEEcCCCCceEEEE-ecCc--eEEEEEc
Q 006811 151 LNMVAHPDGSNRAFFS-NQEG--KIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~-eq~G--~V~~~~~ 177 (630)
...+++|||. +|+++ ++.| .||++++
T Consensus 246 ~~~~~SPDG~-~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 246 GAPAFSPDGS-KLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CCeEECCCCC-EEEEEEcCCCCcEEEEEEC
Confidence 4578999997 55544 5666 4888874
No 88
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=28.22 E-value=7.7e+02 Score=27.23 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=17.3
Q ss_pred EEEEeeCceeeEEEcCCCCceEEEEe
Q 006811 142 LEKIGNGSYLNMVAHPDGSNRAFFSN 167 (630)
Q Consensus 142 le~va~Gl~~~ma~~pDGs~RlfV~e 167 (630)
+-.|-.|+.-+++.+|||. .+|++|
T Consensus 30 lGmi~~g~~~~~~~spdgk-~~y~a~ 54 (342)
T PF06433_consen 30 LGMIDTGFLGNVALSPDGK-TIYVAE 54 (342)
T ss_dssp EEEEEEESSEEEEE-TTSS-EEEEEE
T ss_pred EEEeecccCCceeECCCCC-EEEEEE
Confidence 3445556666788899996 799887
No 89
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=27.78 E-value=2e+02 Score=33.22 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=54.6
Q ss_pred eeEEcCCCCeEEEEeCCCCCCCCcccccccC--CCCCeeEEEEecCCCCchh--hhhhcccCCCccCCCCCCCCC--CCC
Q 006811 310 QLLFGPTDGYMYFMMGDGGGTADPYNFSQNK--KSLLGKITRLDVDNIPSAA--EIEKLGLWGSYSIPKDNPFSE--DSG 383 (630)
Q Consensus 310 ~L~FGp~DG~LYv~~GDgg~~~DP~~~aQn~--~sl~GKILRIdvDg~p~~~--~~~~~~~~g~YsIP~DNPF~~--~~~ 383 (630)
.+.++|+.|.|||.+|.... ++..+.+ +-..-+|+-||++.....= ....-..| -|.+|..-..++ .++
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p----~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w-D~d~~~~p~l~d~~~~G 312 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSP----WNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEW-DYDGVNEMILFDLKKDG 312 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCC----CCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCc-cccCCCCcEEEEeccCC
Confidence 47888877999999998542 2222211 2345678888887510000 00000011 244443323232 133
Q ss_pred CCCeEEEeccccceeeeecCCCCCee
Q 006811 384 LQPEIWALGLRNPWRCSFDSDRPSYF 409 (630)
Q Consensus 384 ~~pEI~A~GlRNP~r~afD~~~g~~l 409 (630)
....+.+.+=||-+-..+|+.+|+.|
T Consensus 313 ~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 313 KPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cEEEEEEEeCCCceEEEEECCCCcee
Confidence 34468999999999999999999744
No 90
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=27.24 E-value=1.9e+02 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=30.9
Q ss_pred CCCcEEEEEeeCce--eeEEEcCCCCceEEEEec-CceEEEEEc
Q 006811 137 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ-EGKIWLATI 177 (630)
Q Consensus 137 p~G~~le~va~Gl~--~~ma~~pDGs~RlfV~eq-~G~V~~~~~ 177 (630)
|+.=.+++++.||. =+++.++|++ -++|+|- ..+|+.+.+
T Consensus 44 p~t~~~~vl~~~L~fpNGVals~d~~-~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 44 PSTKETTVLLDGLYFPNGVALSPDES-FVLVAETGRYRILRYWL 86 (89)
T ss_dssp TTTTEEEEEEEEESSEEEEEE-TTSS-EEEEEEGGGTEEEEEES
T ss_pred CCCCeEEEehhCCCccCeEEEcCCCC-EEEEEeccCceEEEEEE
Confidence 44457889999998 7899999997 5999996 577877654
No 91
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=25.92 E-value=4.7e+02 Score=29.44 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=35.2
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCC
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFA 219 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPdF~ 219 (630)
.-++++|||. +|--.-++|.|.+++ |..|. .+ .++ ..+--.++.++|++|--.
T Consensus 161 lcvawsPDgk-~iASG~~dg~I~lwd-pktg~--~~----g~~--------l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 161 LCVAWSPDGK-KIASGSKDGSIRLWD-PKTGQ--QI----GRA--------LRGHKKWITALAWEPLHL 213 (480)
T ss_pred EEEEECCCcc-hhhccccCCeEEEec-CCCCC--cc----ccc--------ccCcccceeEEeeccccc
Confidence 4588999995 455555899999986 65443 21 111 223456789999999544
No 92
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=25.83 E-value=60 Score=23.95 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.4
Q ss_pred ccceEEEcCCCcEEEEeC
Q 006811 551 YIYSFGEDNRKDIFILTS 568 (630)
Q Consensus 551 ri~sf~ed~dGeLYvlts 568 (630)
++.+++.|.+|.+||...
T Consensus 14 ~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eEEEEEECCCCCEEEEEe
Confidence 467899999999999853
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.60 E-value=1.7e+02 Score=35.15 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=49.0
Q ss_pred CcEEEEEeeCce-eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceee-----CCCCceee
Q 006811 139 GLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHF-----DTEFGLMG 211 (630)
Q Consensus 139 G~~le~va~Gl~-~~ma~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~-----~~e~GLLG 211 (630)
--||..+.-.-+ +-++|+|-.. |.||+-- +|+|+++.+++. +. ...-|+.+.|.+ +|+..+.|
T Consensus 400 ~~CL~~F~HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~---~V------v~W~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 400 KECLKVFSHNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDK---KV------VDWNDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred cceeeEEecCCeeEEEEecccCC-CcEeecccccceEEeecCcC---ee------EeehhhhhhheeEEeccCCceEEEE
Confidence 368888885555 8899999654 8999885 999999988753 11 123344433321 34444555
Q ss_pred eeeCCCCCCCCEEEEEEeec
Q 006811 212 MAFHPNFAKNGRFFASFNCD 231 (630)
Q Consensus 212 iAfhPdF~~Ng~~YvsYs~~ 231 (630)
.- ||+.++|-+.+
T Consensus 470 t~-------~G~C~fY~t~~ 482 (712)
T KOG0283|consen 470 TF-------NGYCRFYDTEG 482 (712)
T ss_pred Ee-------ccEEEEEEccC
Confidence 32 78877776654
No 94
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=25.12 E-value=1.7e+02 Score=20.77 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=13.8
Q ss_pred eeEEEcCCCCceEEEEecC
Q 006811 151 LNMVAHPDGSNRAFFSNQE 169 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~ 169 (630)
..-+++|||..=+|++++.
T Consensus 12 ~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT
T ss_pred cCEEEecCCCEEEEEecCC
Confidence 7789999997556666666
No 95
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=24.96 E-value=2.8e+02 Score=31.32 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=46.3
Q ss_pred CCCCCCCcEEEEEeeCce---eeEEEcCCC-CceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCc
Q 006811 133 TPNPPQGLCLEKIGNGSY---LNMVAHPDG-SNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFG 208 (630)
Q Consensus 133 ~~~~p~G~~le~va~Gl~---~~ma~~pDG-s~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~G 208 (630)
+-+.|.+ .+...-.|-. .+++|+|.- ..-|--+.-+|.|+++.+. .++|+.||. +-..-
T Consensus 201 vW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-----------~e~~l~~l~-----gH~~R 263 (459)
T KOG0272|consen 201 VWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-----------QETPLQDLE-----GHLAR 263 (459)
T ss_pred EeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC-----------CCcchhhhh-----cchhh
Confidence 3344555 3333333433 789999984 3235555568999888642 134555552 22344
Q ss_pred eeeeeeCCCCCCCCEEEEEEeec
Q 006811 209 LMGMAFHPNFAKNGRFFASFNCD 231 (630)
Q Consensus 209 LLGiAfhPdF~~Ng~~YvsYs~~ 231 (630)
+-.+|||| +|++-.+-+.+
T Consensus 264 Vs~VafHP----sG~~L~TasfD 282 (459)
T KOG0272|consen 264 VSRVAFHP----SGKFLGTASFD 282 (459)
T ss_pred heeeeecC----CCceeeecccc
Confidence 67899999 78887765544
No 96
>PRK05137 tolB translocation protein TolB; Provisional
Probab=24.93 E-value=9.6e+02 Score=26.45 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=17.6
Q ss_pred eeEEEcCCCCceE-EEEecCc--eEEEEEc
Q 006811 151 LNMVAHPDGSNRA-FFSNQEG--KIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs~Rl-fV~eq~G--~V~~~~~ 177 (630)
...+++|||. +| |...+.| .||++++
T Consensus 249 ~~~~~SPDG~-~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 249 FAPRFSPDGR-KVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCcEECCCCC-EEEEEEecCCCceEEEEEC
Confidence 5678999996 45 4455555 4888764
No 97
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=23.99 E-value=1.8e+02 Score=22.50 Aligned_cols=27 Identities=7% Similarity=0.235 Sum_probs=21.9
Q ss_pred eeEEEcCCCC--ceEEEEecCceEEEEEc
Q 006811 151 LNMVAHPDGS--NRAFFSNQEGKIWLATI 177 (630)
Q Consensus 151 ~~ma~~pDGs--~RlfV~eq~G~V~~~~~ 177 (630)
..|.|+|+.. .-|+++|-.|+|.++++
T Consensus 4 R~~kFsP~~~~~DLL~~~E~~g~vhi~D~ 32 (43)
T PF10313_consen 4 RCCKFSPEPGGNDLLAWAEHQGRVHIVDT 32 (43)
T ss_pred EEEEeCCCCCcccEEEEEccCCeEEEEEc
Confidence 5789998655 56888999999999874
No 98
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=23.59 E-value=6.2e+02 Score=23.78 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=33.3
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCC
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 217 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e~GLLGiAfhPd 217 (630)
..+.+.|++. .++++..+|.|+++++.. + +.+ ......+.....++++|+
T Consensus 55 ~~~~~~~~~~-~l~~~~~~~~i~i~~~~~-~--~~~-------------~~~~~~~~~i~~~~~~~~ 104 (289)
T cd00200 55 RDVAASADGT-YLASGSSDKTIRLWDLET-G--ECV-------------RTLTGHTSYVSSVAFSPD 104 (289)
T ss_pred eEEEECCCCC-EEEEEcCCCeEEEEEcCc-c--cce-------------EEEeccCCcEEEEEEcCC
Confidence 4889999984 688888899999987532 1 111 111223446888999986
No 99
>PRK02888 nitrous-oxide reductase; Validated
Probab=23.24 E-value=2.3e+02 Score=33.76 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=48.5
Q ss_pred EEEeeCce-eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCC--CceeeeeeCCCC
Q 006811 143 EKIGNGSY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTE--FGLMGMAFHPNF 218 (630)
Q Consensus 143 e~va~Gl~-~~ma~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~~~~~pflDi~~~V~~~~e--~GLLGiAfhPdF 218 (630)
..|..|-+ ++|.++|||. .++|+.+ ...|-++++.. .+.+ ++ --||..+.|...-| .|.|-.+|++
T Consensus 315 ~yIPVGKsPHGV~vSPDGk-ylyVanklS~tVSVIDv~k---~k~~-~~---~~~~~~~~vvaevevGlGPLHTaFDg-- 384 (635)
T PRK02888 315 RYVPVPKNPHGVNTSPDGK-YFIANGKLSPTVTVIDVRK---LDDL-FD---GKIKPRDAVVAEPELGLGPLHTAFDG-- 384 (635)
T ss_pred EEEECCCCccceEECCCCC-EEEEeCCCCCcEEEEEChh---hhhh-hh---ccCCccceEEEeeccCCCcceEEECC--
Confidence 33445555 9999999996 7888887 68888887521 1111 11 11466555555444 4558889986
Q ss_pred CCCCEEEEEEee
Q 006811 219 AKNGRFFASFNC 230 (630)
Q Consensus 219 ~~Ng~~YvsYs~ 230 (630)
.|..|++-..
T Consensus 385 --~G~aytslf~ 394 (635)
T PRK02888 385 --RGNAYTTLFL 394 (635)
T ss_pred --CCCEEEeEee
Confidence 4778876654
No 100
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=23.07 E-value=6.1e+02 Score=26.44 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=0.0
Q ss_pred EEEeeC---ceeeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcC-CccceeeCCCCceeeeeeCCCC
Q 006811 143 EKIGNG---SYLNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFAD-LTDEVHFDTEFGLMGMAFHPNF 218 (630)
Q Consensus 143 e~va~G---l~~~ma~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~~~~~pflD-i~~~V~~~~e~GLLGiAfhPdF 218 (630)
++|.+| .+..++++|.| -||..+.+|+|+....|.+++ ..++. ....|-..+=..+--+-|+|
T Consensus 73 ~~Ig~g~W~~F~~i~~d~~G--~LYaV~~~G~lyR~~~~~~~~---------~~W~~~~~~~iG~~GW~~f~~vfa~~-- 139 (229)
T PF14517_consen 73 KQIGDGGWNSFKFIFFDPTG--VLYAVTPDGKLYRHPRPTNGS---------DNWIGGSGKKIGGTGWNDFDAVFAGP-- 139 (229)
T ss_dssp EEEE-S-GGG-SEEEE-TTS---EEEEETT-EEEEES---STT-----------HHH-HSEEEE-SSGGGEEEEEE-T--
T ss_pred cccccCcccceeEEEecCCc--cEEEeccccceeeccCCCccC---------cchhhccceecccCCCccceEEEeCC--
Q ss_pred CCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCcEEEEE
Q 006811 219 AKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFT 298 (630)
Q Consensus 219 ~~Ng~~YvsYs~~~~~~~~~~g~~~~ns~~~~~p~~~~~dnG~~~~~~~~~I~r~~~~~~~~~~~~~~~~~~~~~~~Il~ 298 (630)
+|.||+.-... ++.+...... ...+..+...+..
T Consensus 140 --~GvLY~i~~dg-------------------------------------~~~~~~~p~~-------~~~~W~~~s~~v~ 173 (229)
T PF14517_consen 140 --NGVLYAITPDG-------------------------------------RLYRRYRPDG-------GSDRWLSGSGLVG 173 (229)
T ss_dssp --TS-EEEEETTE--------------------------------------EEEE---SS-------TT--HHHH-EEEE
T ss_pred --CccEEEEcCCC-------------------------------------ceEEeCCCCC-------CCCccccccceec
Q ss_pred eccCCCCccceeeEEcCCCCeEEEEeCCC
Q 006811 299 MGLSFNGHHGGQLLFGPTDGYMYFMMGDG 327 (630)
Q Consensus 299 ~~~P~~~H~GG~L~FGp~DG~LYv~~GDg 327 (630)
-...+.-..|.|.| ||.||..-.++
T Consensus 174 ---~~gw~~~~~i~~~~-~g~L~~V~~~G 198 (229)
T PF14517_consen 174 ---GGGWDSFHFIFFSP-DGNLWAVKSNG 198 (229)
T ss_dssp ---SSSGGGEEEEEE-T-TS-EEEE-ETT
T ss_pred ---cCCcccceEEeeCC-CCcEEEEecCC
No 101
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=22.92 E-value=92 Score=36.42 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=34.0
Q ss_pred CCccceEEEcCCCcEEEEeCCeEEEEecCCCCcccccCcccc
Q 006811 549 LGYIYSFGEDNRKDIFILTSDGVYRVVRPSRCSYTCSKENTT 590 (630)
Q Consensus 549 ~gri~sf~ed~dGeLYvlts~gIyRiv~ps~~~~~c~~~~~~ 590 (630)
.++|....+|.+|++||.|++|++|.+-|.+==..|..+...
T Consensus 246 ~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l 287 (671)
T COG3292 246 SGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHL 287 (671)
T ss_pred chheeeeecccCCCEEEeecccceeEecCCCCccccccccCC
Confidence 678999999999999999999988777777665666655544
No 102
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.59 E-value=1e+03 Score=25.95 Aligned_cols=18 Identities=17% Similarity=0.398 Sum_probs=14.2
Q ss_pred eeeEEcCCCCeEEEEeCCC
Q 006811 309 GQLLFGPTDGYMYFMMGDG 327 (630)
Q Consensus 309 G~L~FGp~DG~LYv~~GDg 327 (630)
=+|+.++ ||.|||..=-+
T Consensus 287 EGiamDd-~g~lYIvSEPn 304 (316)
T COG3204 287 EGIAMDD-DGNLYIVSEPN 304 (316)
T ss_pred ceeEECC-CCCEEEEecCC
Confidence 3699999 99999986443
No 103
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.00 E-value=1.7e+02 Score=28.68 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=44.9
Q ss_pred CCccccceeeecCCCCCccc-CcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCcCCCCCCccce
Q 006811 476 GSASITGGYFYRSMTDPCMF-GRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIYS 554 (630)
Q Consensus 476 gs~S~tGg~vYrG~~fP~l~-G~ylfgD~~sg~lw~~~~~p~~sG~~~~~~i~f~c~~~~p~~c~~~~g~~~~~~gri~s 554 (630)
++.||.= .|-.|+.-|.++ |..+| ||++.++|...|.-.+-++ ++.+++ -..|++.
T Consensus 45 ~seSPiV-VVLSgSMePaF~RGDlLf-------L~N~~~~p~~vGdivVf~v-----egR~IP----------iVHRviK 101 (180)
T KOG3342|consen 45 GSESPIV-VVLSGSMEPAFHRGDLLF-------LTNRNEDPIRVGDIVVFKV-----EGREIP----------IVHRVIK 101 (180)
T ss_pred CCCCCEE-EEEcCCcCcccccccEEE-------EecCCCCcceeccEEEEEE-----CCccCc----------hhHHHHH
Confidence 4445542 466788888775 88776 4777777766664332222 223233 3558888
Q ss_pred EEEcCCCcEEEEeC
Q 006811 555 FGEDNRKDIFILTS 568 (630)
Q Consensus 555 f~ed~dGeLYvlts 568 (630)
+-|..+|+..++|.
T Consensus 102 ~he~~~~~~~~LTK 115 (180)
T KOG3342|consen 102 QHEKSNGHIKFLTK 115 (180)
T ss_pred HhcccCCcEEEEec
Confidence 88889999988884
No 104
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=21.48 E-value=2.4e+02 Score=24.80 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEEEEeeCce--eeEEEcCCCCceEEEEec-CceEEEEEccCC
Q 006811 141 CLEKIGNGSY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQ 180 (630)
Q Consensus 141 ~le~va~Gl~--~~ma~~pDGs~RlfV~eq-~G~V~~~~~p~~ 180 (630)
...++++|+. =+++..||+. .+||++- .+.|++++..++
T Consensus 45 ~~~~va~g~~~aNGI~~s~~~k-~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 45 EVKVVASGFSFANGIAISPDKK-YLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred EeEEeeccCCCCceEEEcCCCC-EEEEEeccCCeEEEEEecCC
No 105
>PRK01742 tolB translocation protein TolB; Provisional
Probab=21.29 E-value=8.5e+02 Score=26.90 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=15.8
Q ss_pred eeEEEcCCCCceEEEEecCceEEEE
Q 006811 151 LNMVAHPDGSNRAFFSNQEGKIWLA 175 (630)
Q Consensus 151 ~~ma~~pDGs~RlfV~eq~G~V~~~ 175 (630)
...++.|||..-+|++++.|.+.++
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred CCEEECCCCCEEEEEECCCCCceEE
Confidence 6788899996334555566744433
No 106
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=21.01 E-value=7.4e+02 Score=28.66 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCccceeeEEcCCCCeEEEEeCCCCCCC----------Ccc-c----ccccCCCCCeeEEEEecCCCCchhhhhhcccCC
Q 006811 304 NGHHGGQLLFGPTDGYMYFMMGDGGGTA----------DPY-N----FSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWG 368 (630)
Q Consensus 304 ~~H~GG~L~FGp~DG~LYv~~GDgg~~~----------DP~-~----~aQn~~sl~GKILRIdvDg~p~~~~~~~~~~~g 368 (630)
+.|+=+.+.++|..|.||+.+++....- .++ . .........|.|.-||+... .-+|
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tG--------k~~W- 455 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITG--------KIVW- 455 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCC--------ceee-
Confidence 4566677999997899999999953210 111 0 00111245788999998752 0122
Q ss_pred CccCCCCCCCCCCC-CCCCeEEEeccccceeeeecCCCCCeeEEEecc
Q 006811 369 SYSIPKDNPFSEDS-GLQPEIWALGLRNPWRCSFDSDRPSYFMCADVG 415 (630)
Q Consensus 369 ~YsIP~DNPF~~~~-~~~pEI~A~GlRNP~r~afD~~~g~~l~~~DvG 415 (630)
..|.+-|..... -....++-.|-.+-.=.+||..||+.||-.+.|
T Consensus 456 --~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 456 --EHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred --EecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 333333322211 001223333655666667777777666655554
No 107
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.62 E-value=1e+02 Score=27.52 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=17.5
Q ss_pred CCccceEEEcCCCcEEEEeC
Q 006811 549 LGYIYSFGEDNRKDIFILTS 568 (630)
Q Consensus 549 ~gri~sf~ed~dGeLYvlts 568 (630)
.|||.++..|+||++||.=+
T Consensus 23 vgrV~dIkkdEdG~~WV~Ld 42 (97)
T COG4014 23 VGRVVDIKKDEDGDIWVVLD 42 (97)
T ss_pred eeeEEEEEeecCCceEEEEe
Confidence 68999999999999998644
Done!