Query 006812
Match_columns 630
No_of_seqs 1297 out of 4176
Neff 11.7
Searched_HMMs 46136
Date Thu Mar 28 14:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.1E-42 6.8E-47 318.6 28.6 383 105-571 109-491 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 6.5E-40 1.4E-44 303.3 30.0 378 107-568 145-522 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 5.7E-32 1.2E-36 280.1 42.8 413 111-590 126-597 (615)
4 KOG1840 Kinesin light chain [C 100.0 7.8E-31 1.7E-35 250.8 44.7 397 113-572 89-486 (508)
5 KOG1840 Kinesin light chain [C 100.0 4.4E-29 9.6E-34 238.8 43.6 338 163-545 163-501 (508)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 6.1E-28 1.3E-32 267.3 44.2 398 109-592 462-868 (899)
7 TIGR00990 3a0801s09 mitochondr 100.0 4.5E-28 9.8E-33 251.1 39.8 361 112-525 160-573 (615)
8 PRK11447 cellulose synthase su 100.0 2.6E-27 5.6E-32 261.2 46.9 426 108-590 177-740 (1157)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-27 3E-32 264.4 44.1 395 108-588 495-898 (899)
10 PRK11447 cellulose synthase su 100.0 1.3E-26 2.8E-31 255.8 47.1 388 117-564 274-739 (1157)
11 KOG2002 TPR-containing nuclear 100.0 2.4E-26 5.2E-31 225.2 35.6 396 109-568 304-712 (1018)
12 PRK15174 Vi polysaccharide exp 100.0 2.5E-25 5.4E-30 229.3 40.7 358 161-594 46-407 (656)
13 KOG2002 TPR-containing nuclear 100.0 2.2E-25 4.8E-30 218.5 37.4 394 107-568 159-562 (1018)
14 PRK15174 Vi polysaccharide exp 100.0 9.8E-25 2.1E-29 224.9 39.2 365 116-559 46-414 (656)
15 KOG0547 Translocase of outer m 100.0 1.9E-24 4E-29 195.9 35.9 397 110-568 113-569 (606)
16 PRK10049 pgaA outer membrane p 99.9 4.5E-23 9.8E-28 217.5 38.5 396 108-566 45-457 (765)
17 KOG2003 TPR repeat-containing 99.9 1.4E-22 3.1E-27 182.1 34.4 385 109-564 234-688 (840)
18 KOG1130 Predicted G-alpha GTPa 99.9 1.8E-23 3.9E-28 185.5 25.0 329 118-470 23-373 (639)
19 PRK10049 pgaA outer membrane p 99.9 5.1E-22 1.1E-26 209.6 39.8 404 120-594 23-460 (765)
20 PRK11788 tetratricopeptide rep 99.9 5.8E-22 1.3E-26 195.7 35.5 311 209-568 37-350 (389)
21 KOG1130 Predicted G-alpha GTPa 99.9 6E-23 1.3E-27 182.2 24.9 329 162-511 22-372 (639)
22 KOG1155 Anaphase-promoting com 99.9 3.6E-20 7.7E-25 167.4 38.2 392 112-592 164-555 (559)
23 KOG0547 Translocase of outer m 99.9 1.8E-21 3.9E-26 176.8 29.5 384 155-591 113-567 (606)
24 PRK11788 tetratricopeptide rep 99.9 8.4E-21 1.8E-25 187.5 36.0 309 113-481 36-347 (389)
25 PLN03218 maturation of RBCL 1; 99.9 1.7E-19 3.6E-24 191.6 46.3 433 90-598 384-849 (1060)
26 PLN03081 pentatricopeptide (PP 99.9 1.9E-20 4E-25 197.5 38.7 423 89-595 100-562 (697)
27 PLN03218 maturation of RBCL 1; 99.9 2.6E-19 5.7E-24 190.2 47.0 406 114-596 372-789 (1060)
28 KOG2003 TPR repeat-containing 99.9 6.8E-21 1.5E-25 171.4 24.2 385 113-560 202-616 (840)
29 PLN03081 pentatricopeptide (PP 99.9 2.3E-19 5E-24 189.2 39.5 394 96-565 143-557 (697)
30 KOG1126 DNA-binding cell divis 99.9 4.9E-21 1.1E-25 181.4 23.3 304 205-565 315-620 (638)
31 PRK09782 bacteriophage N4 rece 99.9 1.1E-19 2.3E-24 191.7 35.6 340 155-565 374-740 (987)
32 PRK09782 bacteriophage N4 rece 99.9 3.6E-19 7.9E-24 187.7 38.6 328 207-589 376-732 (987)
33 KOG1126 DNA-binding cell divis 99.9 4.6E-21 1E-25 181.6 21.4 303 156-523 316-620 (638)
34 KOG0548 Molecular co-chaperone 99.9 1.5E-18 3.2E-23 160.6 35.3 386 116-590 6-472 (539)
35 KOG1173 Anaphase-promoting com 99.9 7.4E-19 1.6E-23 163.2 32.5 397 115-565 52-518 (611)
36 KOG1155 Anaphase-promoting com 99.9 1.9E-18 4.1E-23 156.4 33.5 308 158-522 228-535 (559)
37 KOG2076 RNA polymerase III tra 99.9 4E-18 8.6E-23 167.1 38.1 391 112-565 139-555 (895)
38 PRK14574 hmsH outer membrane p 99.8 3.5E-17 7.6E-22 169.3 40.1 418 108-591 30-514 (822)
39 KOG2076 RNA polymerase III tra 99.8 6.9E-18 1.5E-22 165.4 32.5 349 157-563 139-510 (895)
40 KOG1173 Anaphase-promoting com 99.8 6.3E-18 1.4E-22 157.1 29.9 274 208-523 245-518 (611)
41 PLN03077 Protein ECB2; Provisi 99.8 5.7E-17 1.2E-21 175.5 41.0 330 115-522 89-483 (857)
42 PLN03077 Protein ECB2; Provisi 99.8 1.4E-16 3E-21 172.5 41.1 406 113-597 254-727 (857)
43 KOG0624 dsRNA-activated protei 99.8 1.2E-16 2.6E-21 139.2 29.9 321 153-523 34-370 (504)
44 PRK04841 transcriptional regul 99.8 2.5E-15 5.3E-20 165.3 48.0 415 116-571 345-766 (903)
45 PRK14574 hmsH outer membrane p 99.8 6.7E-16 1.5E-20 159.9 40.6 388 117-569 73-517 (822)
46 KOG0548 Molecular co-chaperone 99.8 9.7E-16 2.1E-20 142.2 34.1 376 108-562 32-486 (539)
47 TIGR00540 hemY_coli hemY prote 99.8 5.8E-16 1.3E-20 151.8 34.7 316 211-571 88-405 (409)
48 KOG1129 TPR repeat-containing 99.8 5.7E-18 1.2E-22 146.3 17.8 283 216-545 188-472 (478)
49 KOG1941 Acetylcholine receptor 99.8 1.4E-15 3.1E-20 133.5 32.6 340 161-523 10-360 (518)
50 KOG1129 TPR repeat-containing 99.8 2.8E-17 6E-22 142.1 20.9 282 246-568 178-461 (478)
51 KOG0624 dsRNA-activated protei 99.8 1.4E-14 3.1E-19 126.4 35.1 321 107-480 33-369 (504)
52 KOG4162 Predicted calmodulin-b 99.8 2.8E-14 6.1E-19 138.1 38.0 386 156-590 322-783 (799)
53 PF13429 TPR_15: Tetratricopep 99.8 3.1E-18 6.8E-23 159.6 11.1 266 254-566 13-278 (280)
54 PF13429 TPR_15: Tetratricopep 99.8 1.7E-17 3.6E-22 154.7 15.2 265 212-523 13-277 (280)
55 PRK04841 transcriptional regul 99.8 6.1E-14 1.3E-18 154.3 45.6 394 104-526 366-763 (903)
56 PRK10747 putative protoheme IX 99.8 8.5E-15 1.8E-19 142.8 34.4 301 210-566 87-391 (398)
57 KOG1941 Acetylcholine receptor 99.7 1.6E-14 3.4E-19 127.1 31.1 344 113-482 7-361 (518)
58 TIGR00540 hemY_coli hemY prote 99.7 6.5E-15 1.4E-19 144.5 31.6 313 159-525 86-401 (409)
59 cd05804 StaR_like StaR_like; a 99.7 1.2E-14 2.7E-19 141.5 32.7 339 153-530 2-343 (355)
60 COG2956 Predicted N-acetylgluc 99.7 3.7E-14 8.1E-19 123.0 31.1 304 117-480 40-346 (389)
61 KOG1174 Anaphase-promoting com 99.7 3.9E-13 8.5E-18 120.5 38.0 291 246-594 229-521 (564)
62 COG3063 PilF Tfp pilus assembl 99.7 1.3E-15 2.9E-20 125.9 20.1 204 329-566 33-237 (250)
63 KOG1156 N-terminal acetyltrans 99.7 8.2E-13 1.8E-17 125.6 41.1 408 107-572 36-518 (700)
64 COG2956 Predicted N-acetylgluc 99.7 5.7E-14 1.2E-18 121.9 30.3 236 213-480 41-277 (389)
65 KOG4162 Predicted calmodulin-b 99.7 7.1E-14 1.5E-18 135.3 34.3 358 109-525 390-785 (799)
66 PRK12370 invasion protein regu 99.7 2.1E-15 4.6E-20 153.6 25.6 250 263-563 275-533 (553)
67 TIGR02521 type_IV_pilW type IV 99.7 2E-15 4.4E-20 138.0 22.8 205 328-565 28-232 (234)
68 PRK12370 invasion protein regu 99.7 3.6E-15 7.8E-20 151.9 26.5 222 305-568 275-505 (553)
69 cd05804 StaR_like StaR_like; a 99.7 1.9E-13 4.1E-18 133.2 36.7 339 204-573 3-344 (355)
70 KOG0550 Molecular chaperone (D 99.7 1.7E-14 3.7E-19 129.3 24.9 286 112-440 49-350 (486)
71 KOG0495 HAT repeat protein [RN 99.7 1.2E-12 2.6E-17 124.4 38.3 341 158-564 517-879 (913)
72 KOG1156 N-terminal acetyltrans 99.7 1.5E-12 3.2E-17 123.8 38.9 377 113-561 8-464 (700)
73 COG3063 PilF Tfp pilus assembl 99.7 1.2E-14 2.5E-19 120.4 20.9 205 287-522 31-235 (250)
74 PRK11189 lipoprotein NlpI; Pro 99.7 2.1E-14 4.5E-19 133.8 25.5 244 263-548 40-283 (296)
75 TIGR02521 type_IV_pilW type IV 99.7 1.8E-14 3.8E-19 131.8 24.7 205 287-522 27-231 (234)
76 PRK11189 lipoprotein NlpI; Pro 99.7 1.7E-14 3.8E-19 134.4 24.8 223 128-399 41-266 (296)
77 KOG1127 TPR repeat-containing 99.7 3.2E-13 7E-18 134.0 33.6 432 113-591 563-1068(1238)
78 KOG1127 TPR repeat-containing 99.7 1.4E-13 3.1E-18 136.5 30.0 398 106-568 486-999 (1238)
79 PRK10747 putative protoheme IX 99.7 2.3E-13 5E-18 132.7 31.2 304 111-482 83-391 (398)
80 KOG1125 TPR repeat-containing 99.7 6.2E-15 1.3E-19 138.2 18.9 270 253-557 289-563 (579)
81 KOG3785 Uncharacterized conser 99.7 5E-13 1.1E-17 117.5 29.2 369 128-561 37-453 (557)
82 KOG2376 Signal recognition par 99.7 6.3E-12 1.4E-16 118.4 37.6 403 116-560 83-515 (652)
83 KOG2376 Signal recognition par 99.7 1.6E-11 3.5E-16 115.6 40.1 407 121-591 21-488 (652)
84 KOG0495 HAT repeat protein [RN 99.6 1.1E-11 2.4E-16 117.9 38.4 312 208-572 517-853 (913)
85 KOG1174 Anaphase-promoting com 99.6 1.1E-12 2.3E-17 117.8 29.8 280 207-544 232-513 (564)
86 KOG1125 TPR repeat-containing 99.6 2.9E-14 6.3E-19 133.8 20.6 270 161-473 289-563 (579)
87 KOG3785 Uncharacterized conser 99.6 3.4E-12 7.3E-17 112.4 29.4 424 109-597 54-521 (557)
88 KOG0550 Molecular chaperone (D 99.6 1E-13 2.2E-18 124.4 20.0 300 156-524 48-351 (486)
89 KOG1915 Cell cycle control pro 99.6 1.5E-10 3.2E-15 106.2 38.6 416 112-595 73-541 (677)
90 KOG1915 Cell cycle control pro 99.6 7.1E-10 1.5E-14 101.9 41.4 433 107-594 102-589 (677)
91 KOG2300 Uncharacterized conser 99.6 5.1E-09 1.1E-13 96.6 46.3 424 110-561 44-552 (629)
92 TIGR03302 OM_YfiO outer membra 99.5 4.9E-12 1.1E-16 115.0 21.1 181 203-397 29-231 (235)
93 PF14938 SNAP: Soluble NSF att 99.5 2.5E-11 5.4E-16 112.4 24.6 224 205-436 33-262 (282)
94 PF14938 SNAP: Soluble NSF att 99.5 1.3E-11 2.8E-16 114.2 21.7 227 289-521 33-264 (282)
95 TIGR03302 OM_YfiO outer membra 99.5 7.9E-12 1.7E-16 113.6 20.0 177 368-564 32-231 (235)
96 PF12569 NARP1: NMDA receptor- 99.5 7.1E-10 1.5E-14 109.1 34.2 364 112-551 4-390 (517)
97 PF12569 NARP1: NMDA receptor- 99.4 6.7E-10 1.5E-14 109.3 32.2 292 250-572 5-341 (517)
98 KOG2047 mRNA splicing factor [ 99.4 3.2E-09 6.9E-14 101.4 33.5 298 246-563 245-613 (835)
99 PLN02789 farnesyltranstransfer 99.4 3E-10 6.6E-15 105.4 25.9 216 293-549 39-268 (320)
100 COG3071 HemY Uncharacterized e 99.4 1.6E-08 3.4E-13 91.6 35.6 302 210-568 87-393 (400)
101 KOG2047 mRNA splicing factor [ 99.4 1.6E-08 3.5E-13 96.8 34.9 411 109-564 245-686 (835)
102 PLN02789 farnesyltranstransfer 99.4 1.5E-09 3.3E-14 100.8 27.7 209 258-507 46-268 (320)
103 PF13424 TPR_12: Tetratricopep 99.3 8.7E-12 1.9E-16 90.5 9.4 78 490-568 1-78 (78)
104 KOG4340 Uncharacterized conser 99.3 1.7E-08 3.6E-13 87.4 30.1 216 128-393 25-265 (459)
105 KOG3617 WD40 and TPR repeat-co 99.3 3.3E-08 7.2E-13 97.2 34.5 337 159-563 759-1172(1416)
106 KOG2300 Uncharacterized conser 99.3 3.3E-07 7.2E-12 85.0 38.8 426 112-571 7-520 (629)
107 KOG1839 Uncharacterized protei 99.3 3.3E-09 7.2E-14 110.4 28.6 431 129-574 640-1138(1236)
108 PRK15179 Vi polysaccharide bio 99.3 4.4E-10 9.6E-15 114.9 21.2 136 408-566 83-218 (694)
109 PF13424 TPR_12: Tetratricopep 99.2 1.2E-10 2.6E-15 84.5 10.4 76 204-280 2-77 (78)
110 COG3071 HemY Uncharacterized e 99.2 8.4E-08 1.8E-12 87.0 30.4 308 111-483 83-392 (400)
111 PRK14720 transcript cleavage f 99.2 1.5E-09 3.2E-14 111.8 21.2 269 286-593 26-309 (906)
112 PRK15359 type III secretion sy 99.2 3.9E-10 8.5E-15 92.3 13.8 125 389-547 13-137 (144)
113 KOG3617 WD40 and TPR repeat-co 99.2 3E-07 6.5E-12 90.7 35.1 259 206-480 857-1173(1416)
114 PRK15179 Vi polysaccharide bio 99.2 2.2E-09 4.8E-14 109.9 21.0 133 369-524 86-218 (694)
115 PRK15359 type III secretion sy 99.2 4.4E-10 9.6E-15 92.0 12.9 110 431-566 13-122 (144)
116 KOG1128 Uncharacterized conser 99.2 1E-09 2.3E-14 106.4 17.2 226 289-570 396-621 (777)
117 KOG4340 Uncharacterized conser 99.2 3.1E-07 6.7E-12 79.8 29.5 292 168-517 21-333 (459)
118 KOG1128 Uncharacterized conser 99.2 1.3E-08 2.9E-13 99.0 23.3 223 208-486 399-621 (777)
119 PRK10370 formate-dependent nit 99.2 4.2E-09 9E-14 91.2 17.9 122 424-568 52-176 (198)
120 PF10345 Cohesin_load: Cohesin 99.1 1.8E-05 3.8E-10 82.2 52.4 440 109-569 56-567 (608)
121 PRK10370 formate-dependent nit 99.1 5.1E-09 1.1E-13 90.7 17.9 120 382-524 52-174 (198)
122 PRK15363 pathogenicity island 99.1 2.4E-09 5.2E-14 85.3 13.0 120 452-588 35-154 (157)
123 COG5010 TadD Flp pilus assembl 99.1 9.7E-09 2.1E-13 87.9 16.9 170 323-520 59-228 (257)
124 PRK10866 outer membrane biogen 99.1 5.2E-08 1.1E-12 87.2 22.6 176 208-394 33-237 (243)
125 PF13525 YfiO: Outer membrane 99.1 4.8E-08 1E-12 85.5 21.7 184 156-389 4-198 (203)
126 PRK14720 transcript cleavage f 99.1 4.5E-08 9.7E-13 101.2 24.2 230 202-463 26-268 (906)
127 KOG3060 Uncharacterized conser 99.1 6.7E-08 1.5E-12 81.9 20.9 190 347-567 28-222 (289)
128 KOG3616 Selective LIM binding 99.0 5.8E-06 1.2E-10 81.0 35.4 308 112-481 661-1024(1636)
129 KOG1839 Uncharacterized protei 99.0 6.6E-08 1.4E-12 101.0 23.9 406 119-539 672-1144(1236)
130 KOG3616 Selective LIM binding 99.0 2.8E-05 6E-10 76.4 39.7 290 249-565 661-1024(1636)
131 PRK15363 pathogenicity island 99.0 2.4E-08 5.1E-13 79.7 15.5 103 408-525 32-134 (157)
132 PF04733 Coatomer_E: Coatomer 99.0 5.6E-09 1.2E-13 95.8 13.9 274 257-589 9-287 (290)
133 CHL00033 ycf3 photosystem I as 99.0 1.9E-08 4.2E-13 85.5 15.7 121 109-246 32-152 (168)
134 COG5010 TadD Flp pilus assembl 99.0 4.1E-08 8.8E-13 84.2 17.2 164 246-436 64-227 (257)
135 PF13525 YfiO: Outer membrane 99.0 3.3E-07 7.1E-12 80.3 23.0 181 207-431 5-198 (203)
136 CHL00033 ycf3 photosystem I as 99.0 1.5E-08 3.2E-13 86.2 13.9 105 452-569 35-146 (168)
137 KOG3060 Uncharacterized conser 99.0 7.6E-07 1.6E-11 75.7 23.2 170 328-524 49-221 (289)
138 PRK02603 photosystem I assembl 99.0 3.5E-08 7.7E-13 84.1 15.8 122 96-241 19-147 (172)
139 KOG1585 Protein required for f 99.0 5.1E-07 1.1E-11 76.1 21.5 201 364-572 26-226 (308)
140 PRK10866 outer membrane biogen 99.0 2.5E-07 5.5E-12 82.8 21.5 178 112-315 32-236 (243)
141 KOG1585 Protein required for f 98.9 1.3E-06 2.8E-11 73.7 23.1 218 207-434 31-250 (308)
142 TIGR02552 LcrH_SycD type III s 98.9 1.7E-08 3.7E-13 82.6 11.8 99 452-566 17-115 (135)
143 PRK02603 photosystem I assembl 98.9 3.9E-08 8.5E-13 83.8 14.3 122 452-586 35-163 (172)
144 PF09976 TPR_21: Tetratricopep 98.9 2.4E-07 5.3E-12 76.3 18.0 123 303-438 23-145 (145)
145 PF12688 TPR_5: Tetratrico pep 98.9 1.2E-07 2.5E-12 73.4 14.8 116 454-586 3-118 (120)
146 KOG0553 TPR repeat-containing 98.9 2.1E-08 4.7E-13 87.5 11.8 103 108-237 77-179 (304)
147 TIGR02552 LcrH_SycD type III s 98.9 8.6E-08 1.9E-12 78.4 14.7 108 244-365 12-119 (135)
148 PF09976 TPR_21: Tetratricopep 98.9 2.3E-07 5E-12 76.5 17.0 122 423-563 23-145 (145)
149 PF10345 Cohesin_load: Cohesin 98.9 0.0002 4.3E-09 74.5 50.7 429 114-564 102-605 (608)
150 KOG0553 TPR repeat-containing 98.9 5.6E-08 1.2E-12 85.0 13.5 122 409-553 79-200 (304)
151 COG2909 MalT ATP-dependent tra 98.9 0.0001 2.2E-09 74.8 37.5 265 209-479 417-686 (894)
152 PF04733 Coatomer_E: Coatomer 98.9 5E-08 1.1E-12 89.6 13.8 260 215-536 9-273 (290)
153 KOG1586 Protein required for f 98.8 1.2E-05 2.7E-10 67.5 24.5 196 169-399 26-225 (288)
154 TIGR02795 tol_pal_ybgF tol-pal 98.8 6.3E-08 1.4E-12 77.3 11.1 105 453-567 3-107 (119)
155 PF12895 Apc3: Anaphase-promot 98.8 3E-08 6.6E-13 72.8 7.2 84 464-562 1-84 (84)
156 TIGR02795 tol_pal_ybgF tol-pal 98.8 2E-07 4.4E-12 74.4 12.6 102 412-523 3-105 (119)
157 COG4783 Putative Zn-dependent 98.7 7.5E-07 1.6E-11 83.4 16.7 151 410-591 305-455 (484)
158 COG2909 MalT ATP-dependent tra 98.7 0.00032 6.8E-09 71.4 35.9 330 207-562 347-685 (894)
159 PF12688 TPR_5: Tetratrico pep 98.7 7.1E-07 1.5E-11 69.1 13.6 101 412-522 2-103 (120)
160 PF12895 Apc3: Anaphase-promot 98.7 2.2E-07 4.7E-12 68.2 10.3 83 344-437 2-84 (84)
161 KOG3081 Vesicle coat complex C 98.7 2.9E-05 6.4E-10 66.9 24.0 273 257-590 16-294 (299)
162 COG4783 Putative Zn-dependent 98.7 2.3E-06 4.9E-11 80.3 18.9 149 208-399 307-455 (484)
163 PF13414 TPR_11: TPR repeat; P 98.7 9.3E-08 2E-12 67.2 7.2 64 494-565 3-67 (69)
164 KOG1586 Protein required for f 98.7 1.2E-05 2.7E-10 67.6 20.2 196 127-363 28-227 (288)
165 PLN03088 SGT1, suppressor of 98.6 2.8E-07 6E-12 88.2 12.0 96 455-566 5-100 (356)
166 PLN03088 SGT1, suppressor of 98.6 5.3E-07 1.1E-11 86.3 13.8 113 414-549 5-117 (356)
167 COG4785 NlpI Lipoprotein NlpI, 98.6 2.1E-05 4.6E-10 65.4 20.7 225 155-427 63-291 (297)
168 KOG2471 TPR repeat-containing 98.6 8.6E-05 1.9E-09 69.6 26.4 253 110-381 98-381 (696)
169 PRK10803 tol-pal system protei 98.6 7.7E-07 1.7E-11 80.2 13.1 105 453-567 143-248 (263)
170 KOG3081 Vesicle coat complex C 98.6 0.00018 3.8E-09 62.3 26.1 250 215-522 16-269 (299)
171 cd00189 TPR Tetratricopeptide 98.6 4.6E-07 9.9E-12 69.2 10.0 96 454-565 2-97 (100)
172 KOG0543 FKBP-type peptidyl-pro 98.6 1.7E-06 3.6E-11 79.5 14.2 139 411-565 208-355 (397)
173 KOG1070 rRNA processing protei 98.6 1.5E-05 3.2E-10 84.0 22.4 209 327-565 1454-1663(1710)
174 KOG1070 rRNA processing protei 98.6 9.4E-05 2E-09 78.2 27.9 210 287-523 1454-1663(1710)
175 PF13414 TPR_11: TPR repeat; P 98.6 5.8E-07 1.2E-11 63.2 8.7 64 291-360 3-67 (69)
176 COG4105 ComL DNA uptake lipopr 98.5 3.6E-05 7.7E-10 66.8 20.1 175 207-392 34-227 (254)
177 KOG0543 FKBP-type peptidyl-pro 98.5 5.4E-06 1.2E-10 76.2 15.7 138 249-396 208-353 (397)
178 PF13432 TPR_16: Tetratricopep 98.5 6.6E-07 1.4E-11 61.9 7.4 60 499-566 2-61 (65)
179 KOG1464 COP9 signalosome, subu 98.5 3.6E-05 7.9E-10 66.3 18.6 238 128-383 42-286 (440)
180 cd00189 TPR Tetratricopeptide 98.5 1.1E-06 2.4E-11 66.9 9.1 96 159-278 2-97 (100)
181 PRK10803 tol-pal system protei 98.5 2.8E-06 6E-11 76.7 12.4 103 208-320 143-246 (263)
182 PRK15331 chaperone protein Sic 98.5 4E-06 8.7E-11 67.4 11.7 119 452-591 37-155 (165)
183 COG4785 NlpI Lipoprotein NlpI, 98.5 1.2E-05 2.6E-10 66.7 14.7 228 108-384 61-290 (297)
184 PF13432 TPR_16: Tetratricopep 98.4 1.3E-06 2.9E-11 60.3 7.4 59 457-523 2-60 (65)
185 PF08631 SPO22: Meiosis protei 98.4 0.00049 1.1E-08 63.7 26.5 254 259-522 3-274 (278)
186 COG1729 Uncharacterized protei 98.4 3.3E-06 7.2E-11 73.8 10.7 104 455-568 144-247 (262)
187 PF08631 SPO22: Meiosis protei 98.4 0.0012 2.6E-08 61.1 28.2 252 218-480 4-274 (278)
188 KOG1464 COP9 signalosome, subu 98.4 0.00011 2.4E-09 63.5 19.2 239 220-466 40-286 (440)
189 KOG2471 TPR repeat-containing 98.4 2.8E-05 6E-10 72.8 16.6 267 249-548 100-381 (696)
190 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.2E-05 2.6E-10 76.6 14.6 120 417-562 175-294 (395)
191 COG3898 Uncharacterized membra 98.3 0.0025 5.5E-08 58.5 29.2 299 118-480 90-391 (531)
192 PF10300 DUF3808: Protein of u 98.3 0.0021 4.5E-08 64.2 29.9 180 300-496 197-391 (468)
193 PF10300 DUF3808: Protein of u 98.3 0.0027 5.8E-08 63.4 30.6 176 343-536 200-389 (468)
194 KOG4555 TPR repeat-containing 98.3 1.8E-05 3.8E-10 59.9 11.2 100 455-566 46-145 (175)
195 KOG4555 TPR repeat-containing 98.3 3.3E-05 7.2E-10 58.4 12.6 102 292-399 44-145 (175)
196 COG4105 ComL DNA uptake lipopr 98.3 0.00026 5.5E-09 61.6 19.4 176 331-517 34-227 (254)
197 COG5159 RPN6 26S proteasome re 98.3 0.001 2.2E-08 58.2 22.6 227 254-483 8-237 (421)
198 COG1729 Uncharacterized protei 98.3 1.1E-05 2.5E-10 70.6 11.2 107 252-366 144-250 (262)
199 COG4700 Uncharacterized protei 98.3 0.00027 5.9E-09 57.5 17.9 136 412-568 90-225 (251)
200 KOG4234 TPR repeat-containing 98.3 3.4E-05 7.5E-10 63.2 12.8 106 111-238 94-199 (271)
201 COG0457 NrfG FOG: TPR repeat [ 98.2 0.0044 9.5E-08 56.8 29.2 229 262-523 36-265 (291)
202 COG3898 Uncharacterized membra 98.2 0.005 1.1E-07 56.6 31.2 298 213-565 90-392 (531)
203 PRK10153 DNA-binding transcrip 98.2 5.4E-05 1.2E-09 75.8 15.7 130 294-440 342-482 (517)
204 PRK10153 DNA-binding transcrip 98.2 5.1E-05 1.1E-09 76.0 15.2 133 369-523 339-482 (517)
205 COG4235 Cytochrome c biogenesi 98.2 0.00011 2.5E-09 65.3 15.3 112 243-368 150-264 (287)
206 KOG0985 Vesicle coat protein c 98.1 0.0086 1.9E-07 62.0 29.6 58 208-278 1105-1162(1666)
207 COG4235 Cytochrome c biogenesi 98.1 4.9E-05 1.1E-09 67.5 12.5 104 449-568 153-259 (287)
208 COG0457 NrfG FOG: TPR repeat [ 98.1 0.0042 9.1E-08 56.9 26.6 209 330-568 58-268 (291)
209 PRK15331 chaperone protein Sic 98.1 3.5E-05 7.5E-10 62.2 10.1 103 325-439 31-133 (165)
210 PF14559 TPR_19: Tetratricopep 98.1 6.6E-06 1.4E-10 57.5 5.1 67 462-544 1-67 (68)
211 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.8E-05 1.9E-09 70.8 14.0 118 298-436 176-293 (395)
212 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.4E-05 3E-10 75.5 8.5 72 489-565 70-141 (453)
213 KOG4234 TPR repeat-containing 98.1 6.1E-05 1.3E-09 61.8 11.0 106 250-364 96-201 (271)
214 PF13512 TPR_18: Tetratricopep 98.1 6.4E-05 1.4E-09 59.2 10.7 122 452-593 10-131 (142)
215 PF13374 TPR_10: Tetratricopep 98.0 1E-05 2.2E-10 50.1 4.8 41 494-534 2-42 (42)
216 COG5159 RPN6 26S proteasome re 98.0 0.0071 1.5E-07 53.1 23.3 224 212-444 8-239 (421)
217 COG4700 Uncharacterized protei 98.0 0.0017 3.6E-08 53.1 18.0 157 260-441 67-223 (251)
218 KOG1463 26S proteasome regulat 98.0 0.0095 2.1E-07 53.7 28.1 295 254-561 9-312 (411)
219 KOG2041 WD40 repeat protein [G 98.0 0.019 4.2E-07 57.0 32.2 62 158-232 693-759 (1189)
220 PF12968 DUF3856: Domain of Un 98.0 0.0015 3.2E-08 48.7 16.1 124 111-240 6-133 (144)
221 PF13512 TPR_18: Tetratricopep 98.0 0.00011 2.3E-09 58.0 10.7 122 208-364 11-132 (142)
222 KOG1463 26S proteasome regulat 98.0 0.011 2.4E-07 53.4 28.0 300 163-480 10-315 (411)
223 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 3.3E-05 7.3E-10 73.0 9.2 74 200-278 68-141 (453)
224 KOG2796 Uncharacterized conser 98.0 0.0031 6.8E-08 54.6 19.9 141 249-400 177-317 (366)
225 KOG2796 Uncharacterized conser 98.0 0.0019 4.1E-08 55.9 18.1 186 164-364 129-319 (366)
226 PRK11906 transcriptional regul 97.9 0.00026 5.6E-09 67.3 13.8 162 295-477 259-432 (458)
227 PF13371 TPR_9: Tetratricopept 97.9 5.1E-05 1.1E-09 53.9 6.8 59 458-524 1-59 (73)
228 PRK11906 transcriptional regul 97.9 0.00077 1.7E-08 64.2 16.2 148 385-561 274-432 (458)
229 KOG0985 Vesicle coat protein c 97.9 0.049 1.1E-06 56.8 36.5 154 254-431 1199-1374(1666)
230 KOG2610 Uncharacterized conser 97.9 0.02 4.3E-07 51.7 25.9 164 214-395 110-273 (491)
231 PF14559 TPR_19: Tetratricopep 97.8 8.5E-05 1.8E-09 51.8 6.8 52 168-235 2-53 (68)
232 PF13371 TPR_9: Tetratricopept 97.8 7.3E-05 1.6E-09 53.1 6.4 59 500-566 1-59 (73)
233 PF13374 TPR_10: Tetratricopep 97.8 4.2E-05 9.2E-10 47.2 4.5 40 453-492 3-42 (42)
234 PF09986 DUF2225: Uncharacteri 97.8 0.00044 9.6E-09 60.3 11.8 119 465-586 90-213 (214)
235 PF12968 DUF3856: Domain of Un 97.7 0.0047 1E-07 46.2 14.6 123 156-282 6-133 (144)
236 KOG4648 Uncharacterized conser 97.7 0.00022 4.7E-09 63.9 8.7 97 160-280 100-196 (536)
237 KOG4648 Uncharacterized conser 97.7 0.00013 2.8E-09 65.2 7.2 95 456-566 101-195 (536)
238 KOG2053 Mitochondrial inherita 97.7 0.092 2E-06 54.2 29.6 229 219-480 21-254 (932)
239 PF13281 DUF4071: Domain of un 97.7 0.055 1.2E-06 51.2 25.5 204 369-593 141-360 (374)
240 KOG4642 Chaperone-dependent E3 97.6 0.0005 1.1E-08 58.4 9.4 98 456-569 14-111 (284)
241 PF10602 RPN7: 26S proteasome 97.6 0.0047 1E-07 52.3 15.2 113 245-362 32-144 (177)
242 KOG1914 mRNA cleavage and poly 97.6 0.086 1.9E-06 51.2 32.3 104 154-282 17-120 (656)
243 KOG1550 Extracellular protein 97.6 0.054 1.2E-06 55.7 25.5 281 223-564 228-537 (552)
244 KOG4642 Chaperone-dependent E3 97.6 0.00065 1.4E-08 57.8 9.2 102 157-282 10-111 (284)
245 PF09986 DUF2225: Uncharacteri 97.5 0.0014 3.1E-08 57.2 11.4 101 423-523 89-194 (214)
246 KOG1550 Extracellular protein 97.5 0.066 1.4E-06 55.1 25.1 281 173-522 228-537 (552)
247 PF02259 FAT: FAT domain; Int 97.5 0.12 2.5E-06 50.4 28.1 131 408-549 143-305 (352)
248 PF04184 ST7: ST7 protein; In 97.5 0.042 9E-07 52.9 21.0 125 258-394 177-320 (539)
249 KOG0545 Aryl-hydrocarbon recep 97.4 0.003 6.5E-08 54.1 11.4 116 156-280 177-295 (329)
250 PF04184 ST7: ST7 protein; In 97.4 0.022 4.7E-07 54.7 18.0 162 381-565 180-375 (539)
251 PF13281 DUF4071: Domain of un 97.4 0.073 1.6E-06 50.4 21.3 178 331-523 141-334 (374)
252 PF03704 BTAD: Bacterial trans 97.4 0.011 2.4E-07 48.8 14.6 111 116-243 10-132 (146)
253 PF13176 TPR_7: Tetratricopept 97.4 0.00065 1.4E-08 39.8 5.1 32 538-569 1-32 (36)
254 COG2976 Uncharacterized protei 97.4 0.025 5.5E-07 47.1 15.8 104 327-440 85-188 (207)
255 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0025 5.3E-08 57.3 10.3 105 328-440 78-182 (390)
256 PF03704 BTAD: Bacterial trans 97.3 0.0088 1.9E-07 49.4 13.4 110 458-575 12-136 (146)
257 COG2976 Uncharacterized protei 97.3 0.076 1.6E-06 44.4 19.5 99 412-523 90-188 (207)
258 KOG2053 Mitochondrial inherita 97.3 0.28 6.1E-06 50.8 41.0 91 109-227 40-130 (932)
259 KOG4507 Uncharacterized conser 97.3 0.17 3.7E-06 49.6 22.8 101 112-236 212-312 (886)
260 PF06552 TOM20_plant: Plant sp 97.3 0.0025 5.4E-08 52.2 9.2 110 468-586 7-125 (186)
261 KOG1914 mRNA cleavage and poly 97.3 0.21 4.5E-06 48.6 37.7 405 107-565 15-464 (656)
262 KOG2610 Uncharacterized conser 97.2 0.15 3.2E-06 46.4 27.8 165 255-438 109-274 (491)
263 KOG1538 Uncharacterized conser 97.2 0.11 2.4E-06 51.4 21.2 187 336-562 637-830 (1081)
264 KOG0545 Aryl-hydrocarbon recep 97.2 0.0042 9.1E-08 53.2 10.3 111 453-571 179-299 (329)
265 PF13428 TPR_14: Tetratricopep 97.2 0.00065 1.4E-08 42.1 4.1 42 495-544 2-43 (44)
266 PF13176 TPR_7: Tetratricopept 97.2 0.0015 3.2E-08 38.3 5.1 32 413-444 1-32 (36)
267 PF10602 RPN7: 26S proteasome 97.2 0.046 1E-06 46.3 16.0 112 325-439 30-141 (177)
268 PF02259 FAT: FAT domain; Int 97.1 0.28 6.2E-06 47.7 29.5 131 327-464 142-304 (352)
269 PF00515 TPR_1: Tetratricopept 97.1 0.0011 2.3E-08 38.4 4.1 32 249-280 1-32 (34)
270 PF12862 Apc5: Anaphase-promot 97.1 0.0096 2.1E-07 44.4 10.1 82 259-340 8-90 (94)
271 PF13431 TPR_17: Tetratricopep 97.0 0.00039 8.5E-09 40.0 1.8 34 516-557 1-34 (34)
272 PF13428 TPR_14: Tetratricopep 97.0 0.0014 3E-08 40.6 4.5 42 453-502 2-43 (44)
273 PF00515 TPR_1: Tetratricopept 97.0 0.002 4.3E-08 37.2 4.8 31 537-567 2-32 (34)
274 PF05843 Suf: Suppressor of fo 96.9 0.02 4.3E-07 53.1 13.1 136 413-568 3-139 (280)
275 PF07719 TPR_2: Tetratricopept 96.9 0.002 4.2E-08 37.3 4.1 32 249-280 1-32 (34)
276 PF12862 Apc5: Anaphase-promot 96.9 0.03 6.5E-07 41.7 11.4 81 217-299 8-89 (94)
277 KOG0551 Hsp90 co-chaperone CNS 96.9 0.011 2.3E-07 53.4 10.2 106 247-362 79-184 (390)
278 PF07719 TPR_2: Tetratricopept 96.9 0.002 4.4E-08 37.2 3.9 31 537-567 2-32 (34)
279 PF13431 TPR_17: Tetratricopep 96.8 0.0012 2.6E-08 38.0 2.4 32 475-514 2-33 (34)
280 PF06552 TOM20_plant: Plant sp 96.8 0.031 6.7E-07 46.0 11.2 75 205-280 23-104 (186)
281 KOG1538 Uncharacterized conser 96.8 0.57 1.2E-05 46.7 21.3 183 162-396 637-831 (1081)
282 PF05843 Suf: Suppressor of fo 96.7 0.03 6.5E-07 51.9 12.5 133 333-482 3-137 (280)
283 KOG3783 Uncharacterized conser 96.7 0.69 1.5E-05 45.4 27.7 240 208-481 268-520 (546)
284 KOG0890 Protein kinase of the 96.7 1.9 4.1E-05 50.4 33.3 132 427-568 1645-1787(2382)
285 PF13181 TPR_8: Tetratricopept 96.7 0.0056 1.2E-07 35.3 4.7 31 250-280 2-32 (34)
286 COG0790 FOG: TPR repeat, SEL1 96.7 0.58 1.3E-05 44.0 21.0 142 371-550 75-236 (292)
287 PF13181 TPR_8: Tetratricopept 96.6 0.006 1.3E-07 35.2 4.7 31 537-567 2-32 (34)
288 KOG4814 Uncharacterized conser 96.6 0.92 2E-05 45.3 29.7 105 454-568 356-460 (872)
289 PF10579 Rapsyn_N: Rapsyn N-te 96.4 0.034 7.5E-07 38.4 7.8 73 112-192 6-78 (80)
290 KOG4814 Uncharacterized conser 96.2 1.6 3.4E-05 43.8 43.8 104 113-237 355-458 (872)
291 PF11817 Foie-gras_1: Foie gra 96.2 0.82 1.8E-05 41.5 18.0 91 426-519 153-243 (247)
292 KOG4322 Anaphase-promoting com 96.0 1.4 3.1E-05 41.9 24.7 191 244-439 268-470 (482)
293 PF04910 Tcf25: Transcriptiona 96.0 1.7 3.6E-05 42.0 19.7 153 243-399 34-223 (360)
294 COG3118 Thioredoxin domain-con 95.9 0.93 2E-05 41.0 16.1 124 298-439 141-264 (304)
295 COG4649 Uncharacterized protei 95.8 0.72 1.6E-05 37.8 13.8 147 298-480 46-195 (221)
296 PF13174 TPR_6: Tetratricopept 95.7 0.012 2.7E-07 33.5 2.8 31 537-567 1-31 (33)
297 KOG2581 26S proteasome regulat 95.6 1.7 3.7E-05 41.0 17.1 141 259-400 136-278 (493)
298 COG3118 Thioredoxin domain-con 95.6 0.92 2E-05 41.0 14.9 148 374-551 139-287 (304)
299 PF10516 SHNi-TPR: SHNi-TPR; 95.6 0.04 8.6E-07 32.3 4.5 36 495-530 2-37 (38)
300 PF10579 Rapsyn_N: Rapsyn N-te 95.6 0.34 7.4E-06 33.7 9.5 66 212-282 11-76 (80)
301 PF11817 Foie-gras_1: Foie gra 95.5 1.8 4E-05 39.3 23.6 186 208-393 11-242 (247)
302 PF00244 14-3-3: 14-3-3 protei 95.5 1.8 3.8E-05 38.9 20.2 178 252-442 4-200 (236)
303 PF13174 TPR_6: Tetratricopept 95.5 0.032 6.9E-07 31.7 4.0 30 333-362 2-31 (33)
304 KOG0890 Protein kinase of the 95.4 7.8 0.00017 45.8 30.2 130 385-524 1645-1785(2382)
305 PF10516 SHNi-TPR: SHNi-TPR; 95.2 0.078 1.7E-06 31.1 4.8 35 453-487 2-36 (38)
306 PF12739 TRAPPC-Trs85: ER-Golg 95.0 4.1 8.8E-05 40.4 19.6 123 428-569 272-403 (414)
307 COG0790 FOG: TPR repeat, SEL1 94.9 3.5 7.5E-05 38.8 21.6 167 301-508 51-236 (292)
308 PF04781 DUF627: Protein of un 94.8 0.46 1E-05 35.8 9.2 95 458-565 2-107 (111)
309 PF11207 DUF2989: Protein of u 94.8 1.8 3.9E-05 36.9 13.8 61 328-389 138-198 (203)
310 KOG2041 WD40 repeat protein [G 94.7 5.9 0.00013 40.4 33.5 28 205-232 794-821 (1189)
311 KOG1308 Hsp70-interacting prot 94.7 0.015 3.2E-07 52.9 1.3 90 460-565 122-211 (377)
312 PF00244 14-3-3: 14-3-3 protei 94.7 3.1 6.8E-05 37.3 23.2 82 510-591 142-225 (236)
313 COG4649 Uncharacterized protei 94.7 2.1 4.5E-05 35.3 14.9 150 256-439 46-195 (221)
314 PF04190 DUF410: Protein of un 94.5 3.7 8.1E-05 37.5 24.7 230 219-508 2-242 (260)
315 KOG0376 Serine-threonine phosp 94.5 0.055 1.2E-06 51.8 4.8 93 296-398 9-101 (476)
316 PRK14707 hypothetical protein; 94.4 13 0.00029 43.5 25.1 361 161-533 835-1206(2710)
317 PRK13184 pknD serine/threonine 94.4 9.6 0.00021 41.7 31.9 109 111-237 474-582 (932)
318 PRK14707 hypothetical protein; 94.4 14 0.0003 43.4 27.7 341 162-516 794-1147(2710)
319 PF04781 DUF627: Protein of un 94.2 0.66 1.4E-05 35.0 8.9 100 338-439 3-106 (111)
320 PF07079 DUF1347: Protein of u 94.2 5.6 0.00012 38.4 40.2 140 114-279 8-158 (549)
321 KOG0376 Serine-threonine phosp 94.2 0.05 1.1E-06 52.1 3.7 94 456-565 8-101 (476)
322 KOG1258 mRNA processing protei 94.2 7 0.00015 39.3 36.5 125 128-278 56-180 (577)
323 PF04910 Tcf25: Transcriptiona 94.2 5.8 0.00012 38.3 20.5 151 365-524 36-223 (360)
324 PF10952 DUF2753: Protein of u 94.0 0.98 2.1E-05 34.5 9.4 80 160-240 4-83 (140)
325 PF12739 TRAPPC-Trs85: ER-Golg 94.0 7.1 0.00015 38.8 19.4 173 335-525 212-401 (414)
326 KOG1308 Hsp70-interacting prot 93.9 0.027 5.8E-07 51.2 1.3 92 118-236 120-211 (377)
327 KOG0687 26S proteasome regulat 93.7 5.6 0.00012 36.6 15.2 114 287-401 100-213 (393)
328 KOG3783 Uncharacterized conser 93.4 9.1 0.0002 38.0 41.1 259 294-568 234-523 (546)
329 PF07079 DUF1347: Protein of u 93.2 8.7 0.00019 37.2 35.1 136 328-477 376-520 (549)
330 TIGR03504 FimV_Cterm FimV C-te 92.9 0.51 1.1E-05 28.8 5.4 41 540-586 3-43 (44)
331 PF11207 DUF2989: Protein of u 92.8 1.9 4.1E-05 36.8 10.4 77 468-556 122-198 (203)
332 smart00028 TPR Tetratricopepti 92.5 0.21 4.5E-06 27.7 3.4 29 537-565 2-30 (34)
333 KOG0686 COP9 signalosome, subu 92.4 5.5 0.00012 37.9 13.6 105 247-358 148-256 (466)
334 KOG2581 26S proteasome regulat 92.3 11 0.00023 36.0 21.8 140 169-321 138-277 (493)
335 smart00028 TPR Tetratricopepti 92.2 0.2 4.4E-06 27.8 3.1 30 250-279 2-31 (34)
336 PF09613 HrpB1_HrpK: Bacterial 92.2 2.1 4.7E-05 35.0 9.6 118 452-595 10-127 (160)
337 PF09613 HrpB1_HrpK: Bacterial 92.0 2.9 6.3E-05 34.3 10.1 88 155-266 8-95 (160)
338 KOG4507 Uncharacterized conser 91.9 2 4.3E-05 42.7 10.6 98 413-523 214-312 (886)
339 COG5187 RPN7 26S proteasome re 91.6 10 0.00022 34.3 15.9 132 266-400 92-223 (412)
340 PF10952 DUF2753: Protein of u 91.4 4.2 9.1E-05 31.2 9.6 76 497-572 4-86 (140)
341 KOG0687 26S proteasome regulat 91.4 12 0.00025 34.6 15.0 109 205-320 102-210 (393)
342 PF14853 Fis1_TPR_C: Fis1 C-te 91.4 2.6 5.7E-05 27.1 7.7 29 495-523 2-30 (53)
343 PF07721 TPR_4: Tetratricopept 91.3 0.39 8.5E-06 25.4 3.2 25 537-561 2-26 (26)
344 PF08424 NRDE-2: NRDE-2, neces 91.2 14 0.00031 35.2 18.7 171 408-590 16-209 (321)
345 PF07721 TPR_4: Tetratricopept 91.0 0.31 6.8E-06 25.8 2.6 23 496-518 3-25 (26)
346 KOG0686 COP9 signalosome, subu 91.0 4.4 9.6E-05 38.5 11.4 109 328-437 147-255 (466)
347 PF10255 Paf67: RNA polymerase 90.9 0.8 1.7E-05 44.1 7.0 74 496-569 124-197 (404)
348 PF04053 Coatomer_WDAD: Coatom 90.8 19 0.00041 36.0 17.2 78 372-480 298-375 (443)
349 PF15015 NYD-SP12_N: Spermatog 90.8 6.1 0.00013 37.7 12.2 109 163-279 182-292 (569)
350 KOG2561 Adaptor protein NUB1, 90.7 17 0.00036 35.1 14.9 124 113-240 164-300 (568)
351 PF13041 PPR_2: PPR repeat fam 90.7 1.1 2.3E-05 28.5 5.5 30 451-480 2-31 (50)
352 smart00101 14_3_3 14-3-3 homol 90.6 12 0.00027 33.5 23.3 207 373-592 5-228 (244)
353 PF04053 Coatomer_WDAD: Coatom 90.6 16 0.00034 36.5 15.8 130 210-394 298-427 (443)
354 KOG2114 Vacuolar assembly/sort 90.6 26 0.00055 37.1 23.0 49 179-236 349-397 (933)
355 PF14853 Fis1_TPR_C: Fis1 C-te 90.5 2.4 5.1E-05 27.3 6.7 31 250-280 2-32 (53)
356 COG3629 DnrI DNA-binding trans 90.3 10 0.00022 34.7 13.0 84 493-587 152-236 (280)
357 PF04190 DUF410: Protein of un 90.3 14 0.00031 33.8 25.9 96 215-315 18-114 (260)
358 PF12854 PPR_1: PPR repeat 90.3 0.62 1.3E-05 26.6 3.6 29 449-477 4-32 (34)
359 PF15015 NYD-SP12_N: Spermatog 90.1 8.6 0.00019 36.8 12.5 120 458-586 182-311 (569)
360 KOG4014 Uncharacterized conser 90.0 10 0.00022 31.7 14.1 155 383-568 41-236 (248)
361 KOG0508 Ankyrin repeat protein 89.8 0.69 1.5E-05 44.3 5.5 72 476-547 319-390 (615)
362 PF13041 PPR_2: PPR repeat fam 89.0 2.2 4.8E-05 27.0 6.0 45 412-462 4-48 (50)
363 PF08626 TRAPPC9-Trs120: Trans 88.9 14 0.0003 42.6 15.9 191 206-400 241-476 (1185)
364 PF12854 PPR_1: PPR repeat 88.2 1.1 2.4E-05 25.6 3.7 26 537-562 8-33 (34)
365 KOG4014 Uncharacterized conser 88.1 14 0.00031 30.8 12.1 136 434-590 51-233 (248)
366 smart00101 14_3_3 14-3-3 homol 87.9 20 0.00043 32.3 23.3 180 335-524 5-201 (244)
367 KOG0508 Ankyrin repeat protein 87.7 10 0.00022 36.8 11.5 142 156-302 244-390 (615)
368 cd02679 MIT_spastin MIT: domai 87.7 6.8 0.00015 27.8 7.9 53 539-591 11-69 (79)
369 KOG1497 COP9 signalosome, subu 87.4 24 0.00051 32.6 21.2 111 247-358 101-211 (399)
370 PRK13184 pknD serine/threonine 87.2 53 0.0011 36.3 30.5 72 208-281 513-584 (932)
371 TIGR02561 HrpB1_HrpK type III 86.9 11 0.00024 30.5 9.5 87 409-510 8-94 (153)
372 KOG2114 Vacuolar assembly/sort 86.8 47 0.001 35.3 17.3 50 313-362 349-399 (933)
373 COG3947 Response regulator con 86.6 8.9 0.00019 34.8 9.8 72 496-575 281-353 (361)
374 PF08424 NRDE-2: NRDE-2, neces 86.5 31 0.00066 32.9 19.3 124 224-360 48-183 (321)
375 KOG2561 Adaptor protein NUB1, 86.5 13 0.00028 35.8 11.3 133 205-337 161-313 (568)
376 PF14561 TPR_20: Tetratricopep 86.4 5.2 0.00011 29.4 7.3 34 489-522 17-50 (90)
377 KOG1258 mRNA processing protei 86.2 41 0.00089 34.2 44.5 384 109-565 76-470 (577)
378 PF10255 Paf67: RNA polymerase 86.2 3 6.6E-05 40.3 7.5 74 454-527 124-197 (404)
379 COG3629 DnrI DNA-binding trans 86.2 9.1 0.0002 35.0 10.1 72 453-532 154-225 (280)
380 PRK10941 hypothetical protein; 86.2 5.4 0.00012 36.5 8.8 72 289-366 179-250 (269)
381 TIGR02561 HrpB1_HrpK type III 85.8 9.9 0.00021 30.7 8.8 87 156-266 9-95 (153)
382 PF05053 Menin: Menin; InterP 85.5 33 0.00071 34.6 13.9 73 496-571 279-353 (618)
383 PF14561 TPR_20: Tetratricopep 84.9 13 0.00029 27.3 9.5 37 327-363 18-54 (90)
384 TIGR03504 FimV_Cterm FimV C-te 84.8 3.7 7.9E-05 25.2 4.8 25 335-359 3-27 (44)
385 COG5187 RPN7 26S proteasome re 84.0 33 0.00072 31.2 16.4 132 307-443 91-224 (412)
386 PRK10941 hypothetical protein; 84.0 13 0.00028 34.1 10.1 67 155-237 179-245 (269)
387 KOG2422 Uncharacterized conser 83.8 52 0.0011 33.3 17.0 175 261-441 250-449 (665)
388 KOG1497 COP9 signalosome, subu 83.6 37 0.0008 31.4 21.3 109 328-438 100-211 (399)
389 COG3947 Response regulator con 83.1 14 0.00031 33.5 9.5 75 454-536 281-355 (361)
390 KOG1920 IkappaB kinase complex 83.0 84 0.0018 35.1 24.8 22 499-520 1004-1025(1265)
391 PF09670 Cas_Cas02710: CRISPR- 82.9 50 0.0011 32.4 16.3 139 413-568 133-273 (379)
392 PF01535 PPR: PPR repeat; Int 82.8 2.4 5.2E-05 23.1 3.4 27 538-564 2-28 (31)
393 KOG4563 Cell cycle-regulated h 82.2 5.1 0.00011 37.4 6.7 66 495-560 42-107 (400)
394 PF04097 Nic96: Nup93/Nic96; 80.5 83 0.0018 33.3 21.1 19 214-232 265-283 (613)
395 KOG3364 Membrane protein invol 80.5 16 0.00035 28.9 7.9 70 291-364 32-104 (149)
396 KOG2422 Uncharacterized conser 80.4 71 0.0015 32.5 16.9 169 304-482 251-449 (665)
397 cd02682 MIT_AAA_Arch MIT: doma 80.3 17 0.00038 25.4 7.3 38 110-148 4-41 (75)
398 COG4976 Predicted methyltransf 79.4 3.5 7.6E-05 35.8 4.5 57 503-567 4-60 (287)
399 KOG3364 Membrane protein invol 78.8 31 0.00067 27.4 9.0 68 329-398 30-100 (149)
400 KOG4563 Cell cycle-regulated h 78.6 8.8 0.00019 36.0 7.0 63 208-270 42-104 (400)
401 cd02682 MIT_AAA_Arch MIT: doma 78.4 19 0.0004 25.3 7.0 37 157-193 6-42 (75)
402 PF04212 MIT: MIT (microtubule 78.0 16 0.00036 25.0 6.9 30 539-568 8-37 (69)
403 TIGR00756 PPR pentatricopeptid 77.9 5.4 0.00012 22.3 3.9 27 538-564 2-28 (35)
404 COG4976 Predicted methyltransf 77.7 5.3 0.00012 34.7 5.0 61 300-366 4-64 (287)
405 PF01535 PPR: PPR repeat; Int 77.7 3.9 8.4E-05 22.2 3.1 27 496-522 2-28 (31)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 76.8 36 0.00077 27.0 9.6 86 466-563 40-126 (126)
407 COG3014 Uncharacterized protei 75.9 70 0.0015 30.0 16.0 28 296-323 63-90 (449)
408 KOG2908 26S proteasome regulat 75.8 71 0.0015 30.0 15.3 93 380-474 86-179 (380)
409 KOG0128 RNA-binding protein SA 74.5 1.3E+02 0.0027 32.3 34.7 146 208-360 114-260 (881)
410 KOG3824 Huntingtin interacting 74.3 7.1 0.00015 35.5 5.1 60 499-566 121-180 (472)
411 KOG3824 Huntingtin interacting 74.3 8.5 0.00018 35.1 5.6 60 456-523 120-179 (472)
412 KOG0276 Vesicle coat complex C 74.2 25 0.00054 35.6 9.1 51 215-278 645-695 (794)
413 cd02683 MIT_1 MIT: domain cont 73.8 29 0.00063 24.6 7.7 36 111-147 5-40 (77)
414 PF04212 MIT: MIT (microtubule 73.7 26 0.00057 24.0 7.6 35 112-147 5-39 (69)
415 TIGR00756 PPR pentatricopeptid 73.3 7.8 0.00017 21.6 3.7 27 496-522 2-28 (35)
416 PF07163 Pex26: Pex26 protein; 73.0 76 0.0016 29.0 13.7 127 337-476 41-182 (309)
417 cd02679 MIT_spastin MIT: domai 72.7 31 0.00068 24.5 7.2 36 110-146 6-41 (79)
418 KOG0128 RNA-binding protein SA 72.5 1.4E+02 0.0031 31.9 34.9 124 427-563 435-561 (881)
419 KOG4422 Uncharacterized conser 72.4 1E+02 0.0022 30.2 29.8 68 292-359 274-341 (625)
420 PF13812 PPR_3: Pentatricopept 72.2 12 0.00025 20.9 4.2 27 538-564 3-29 (34)
421 COG5107 RNA14 Pre-mRNA 3'-end 72.1 1E+02 0.0023 30.3 20.1 244 135-443 290-534 (660)
422 KOG1920 IkappaB kinase complex 72.1 1.7E+02 0.0038 32.8 27.3 25 456-480 1003-1027(1265)
423 KOG2908 26S proteasome regulat 71.5 91 0.002 29.3 21.5 95 342-440 86-183 (380)
424 cd09239 BRO1_HD-PTP_like Prote 71.5 1E+02 0.0022 29.9 13.9 61 155-215 112-182 (361)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 71.5 49 0.0011 26.2 12.6 86 383-479 40-126 (126)
426 PF05053 Menin: Menin; InterP 71.5 1.1E+02 0.0023 31.2 12.6 58 265-325 295-352 (618)
427 PF10373 EST1_DNA_bind: Est1 D 71.5 62 0.0013 30.0 11.3 62 388-464 1-62 (278)
428 PF07720 TPR_3: Tetratricopept 70.9 18 0.00039 21.0 4.8 24 537-560 2-25 (36)
429 KOG4521 Nuclear pore complex, 69.0 2E+02 0.0044 32.3 23.4 196 250-483 921-1134(1480)
430 PF07720 TPR_3: Tetratricopept 68.6 21 0.00045 20.7 4.9 18 336-353 6-23 (36)
431 cd02681 MIT_calpain7_1 MIT: do 68.3 39 0.00085 23.8 8.0 30 497-526 9-38 (76)
432 cd02681 MIT_calpain7_1 MIT: do 68.2 39 0.00085 23.8 7.7 35 110-145 4-38 (76)
433 PHA02537 M terminase endonucle 67.3 50 0.0011 29.3 8.8 110 167-282 93-211 (230)
434 PF13812 PPR_3: Pentatricopept 66.9 15 0.00034 20.3 4.0 27 496-522 3-29 (34)
435 PF09670 Cas_Cas02710: CRISPR- 65.9 1.4E+02 0.003 29.3 17.1 63 294-360 134-198 (379)
436 KOG3807 Predicted membrane pro 65.8 1.2E+02 0.0026 28.4 17.4 59 116-187 188-246 (556)
437 PF04097 Nic96: Nup93/Nic96; 65.3 1.9E+02 0.0042 30.7 15.7 25 454-478 416-440 (613)
438 PF08626 TRAPPC9-Trs120: Trans 64.6 2.8E+02 0.0061 32.4 24.3 236 110-360 240-552 (1185)
439 PF10373 EST1_DNA_bind: Est1 D 64.3 93 0.002 28.8 11.0 62 310-381 1-62 (278)
440 KOG0276 Vesicle coat complex C 62.1 27 0.00057 35.4 6.7 28 208-235 667-694 (794)
441 cd02683 MIT_1 MIT: domain cont 62.0 54 0.0012 23.2 7.6 32 497-528 9-40 (77)
442 cd02680 MIT_calpain7_2 MIT: do 61.9 21 0.00045 25.1 4.4 33 112-145 6-38 (75)
443 PF09205 DUF1955: Domain of un 60.2 65 0.0014 25.6 7.1 29 536-564 120-148 (161)
444 KOG4279 Serine/threonine prote 59.3 82 0.0018 33.1 9.5 177 369-563 201-393 (1226)
445 KOG1310 WD40 repeat protein [G 59.1 42 0.00091 33.5 7.3 85 467-567 389-476 (758)
446 smart00745 MIT Microtubule Int 58.8 61 0.0013 22.8 7.8 35 112-147 8-42 (77)
447 KOG3024 Uncharacterized conser 58.3 1.5E+02 0.0033 27.2 12.9 63 499-562 90-153 (312)
448 KOG1310 WD40 repeat protein [G 57.8 81 0.0018 31.7 8.9 84 170-277 387-473 (758)
449 KOG2063 Vacuolar assembly/sort 57.7 2.7E+02 0.0058 30.8 13.5 186 293-480 506-712 (877)
450 PF03097 BRO1: BRO1-like domai 57.1 2E+02 0.0043 28.2 15.9 60 155-214 105-173 (377)
451 COG3914 Spy Predicted O-linked 56.8 2.4E+02 0.0052 29.0 13.6 110 284-400 61-173 (620)
452 TIGR02710 CRISPR-associated pr 56.7 2E+02 0.0043 28.1 13.1 60 456-518 134-195 (380)
453 KOG2063 Vacuolar assembly/sort 56.7 2.7E+02 0.006 30.7 13.4 27 159-185 506-532 (877)
454 PRK15180 Vi polysaccharide bio 56.2 36 0.00078 33.4 6.3 94 415-523 327-420 (831)
455 PHA02537 M terminase endonucle 56.2 1.5E+02 0.0032 26.5 12.0 111 460-572 91-214 (230)
456 COG3914 Spy Predicted O-linked 55.8 2.5E+02 0.0054 28.9 12.5 96 458-569 73-175 (620)
457 PF10938 YfdX: YfdX protein; 55.0 1.2E+02 0.0026 25.1 9.7 70 370-439 76-145 (155)
458 KOG2709 Uncharacterized conser 55.0 41 0.00089 32.3 6.3 54 537-590 23-84 (560)
459 PRK15180 Vi polysaccharide bio 54.1 71 0.0015 31.5 7.9 21 336-356 328-348 (831)
460 smart00671 SEL1 Sel1-like repe 53.9 38 0.00083 19.0 4.2 28 537-564 2-33 (36)
461 PF10858 DUF2659: Protein of u 52.5 1.3E+02 0.0029 24.8 13.5 103 456-564 97-199 (220)
462 PF07163 Pex26: Pex26 protein; 51.5 2E+02 0.0043 26.5 13.9 133 373-518 39-182 (309)
463 PF09205 DUF1955: Domain of un 50.8 1.1E+02 0.0024 24.4 7.0 54 461-522 95-148 (161)
464 cd02678 MIT_VPS4 MIT: domain c 49.3 90 0.0019 21.9 7.9 30 499-528 11-40 (75)
465 smart00745 MIT Microtubule Int 46.9 99 0.0021 21.7 8.7 28 541-568 13-40 (77)
466 KOG0546 HSP90 co-chaperone CPR 46.9 36 0.00079 32.0 4.7 111 161-280 226-340 (372)
467 COG3014 Uncharacterized protei 45.2 2.8E+02 0.006 26.4 17.6 30 538-567 215-244 (449)
468 cd02678 MIT_VPS4 MIT: domain c 44.1 1.1E+02 0.0024 21.4 8.1 29 212-240 11-39 (75)
469 KOG2460 Signal recognition par 44.0 3.6E+02 0.0079 27.4 19.7 301 259-568 116-454 (593)
470 KOG0546 HSP90 co-chaperone CPR 43.6 62 0.0013 30.6 5.6 99 416-522 227-337 (372)
471 PF08238 Sel1: Sel1 repeat; I 43.3 63 0.0014 18.6 4.0 28 537-564 2-36 (39)
472 cd02656 MIT MIT: domain contai 43.0 1.1E+02 0.0025 21.3 7.8 35 112-147 6-40 (75)
473 cd09243 BRO1_Brox_like Protein 41.7 3.4E+02 0.0073 26.4 15.1 59 155-213 107-183 (353)
474 KOG4521 Nuclear pore complex, 41.7 5.8E+02 0.013 29.1 19.7 189 158-359 921-1131(1480)
475 cd09240 BRO1_Alix Protein-inte 41.3 3.4E+02 0.0074 26.3 16.0 60 155-214 117-189 (346)
476 PF10037 MRP-S27: Mitochondria 41.0 3.8E+02 0.0083 26.8 11.0 59 415-479 107-165 (429)
477 PF09311 Rab5-bind: Rabaptin-l 40.6 1E+02 0.0022 26.4 6.2 47 489-535 135-181 (181)
478 cd02656 MIT MIT: domain contai 40.0 1.3E+02 0.0028 21.0 8.1 30 499-528 11-40 (75)
479 KOG2758 Translation initiation 39.9 3.3E+02 0.0071 25.7 17.9 73 107-186 124-196 (432)
480 cd02677 MIT_SNX15 MIT: domain 39.6 1.3E+02 0.0029 21.1 8.3 23 546-568 16-38 (75)
481 cd02684 MIT_2 MIT: domain cont 38.9 1.4E+02 0.003 21.0 9.7 35 112-147 6-40 (75)
482 cd02684 MIT_2 MIT: domain cont 38.0 1.4E+02 0.0031 21.0 8.7 26 543-568 13-38 (75)
483 cd09241 BRO1_ScRim20-like Prot 37.4 4E+02 0.0086 25.9 16.3 61 155-215 104-175 (355)
484 COG2912 Uncharacterized conser 36.8 1.2E+02 0.0027 27.6 6.3 70 290-365 180-249 (269)
485 KOG2758 Translation initiation 36.3 3.7E+02 0.0081 25.3 17.3 75 365-443 125-199 (432)
486 PF04840 Vps16_C: Vps16, C-ter 35.9 4E+02 0.0086 25.5 26.3 103 419-561 185-287 (319)
487 KOG0739 AAA+-type ATPase [Post 35.7 2.5E+02 0.0054 26.2 7.9 61 178-278 5-71 (439)
488 COG4259 Uncharacterized protei 35.4 1.6E+02 0.0035 22.0 5.4 34 537-570 73-106 (121)
489 smart00299 CLH Clathrin heavy 35.2 2.3E+02 0.0051 22.6 11.3 84 459-560 14-106 (140)
490 TIGR02710 CRISPR-associated pr 35.0 4.4E+02 0.0096 25.8 12.8 58 417-476 136-195 (380)
491 PF12753 Nro1: Nuclear pore co 34.7 63 0.0014 31.2 4.4 62 510-581 334-400 (404)
492 COG5091 SGT1 Suppressor of G2 34.6 1.9E+02 0.0042 26.2 6.9 60 169-238 51-110 (368)
493 KOG4322 Anaphase-promoting com 34.5 4.7E+02 0.01 25.9 33.3 115 408-525 270-384 (482)
494 cd09242 BRO1_ScBro1_like Prote 34.0 4.5E+02 0.0097 25.5 16.1 60 155-214 105-173 (348)
495 COG1849 Uncharacterized protei 34.0 1.9E+02 0.0041 21.1 6.9 34 109-143 38-71 (90)
496 KOG1524 WD40 repeat-containing 33.9 2.1E+02 0.0045 28.9 7.6 98 331-437 573-670 (737)
497 KOG2582 COP9 signalosome, subu 33.6 1.5E+02 0.0033 28.3 6.5 106 335-440 106-212 (422)
498 smart00386 HAT HAT (Half-A-TPR 33.3 68 0.0015 17.2 3.0 16 508-523 1-16 (33)
499 COG5091 SGT1 Suppressor of G2 32.6 76 0.0016 28.6 4.2 61 304-364 52-112 (368)
500 KOG4151 Myosin assembly protei 32.5 2.3E+02 0.005 30.2 8.2 99 459-573 60-160 (748)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-42 Score=318.59 Aligned_cols=383 Identities=18% Similarity=0.174 Sum_probs=347.6
Q ss_pred ccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHH
Q 006812 105 SFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKAN 184 (630)
Q Consensus 105 ~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (630)
...+|..+.+|.++|.++...| ++++|+.+|+.++++. |..+++|.++|.++...|+.+.|...|..++
T Consensus 109 ~r~~~q~ae~ysn~aN~~kerg-~~~~al~~y~~aiel~----------p~fida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 109 IRKNPQGAEAYSNLANILKERG-QLQDALALYRAAIELK----------PKFIDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhccchHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhcC----------chhhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 3356888999999999999999 9999999999999875 3457899999999999999999999999999
Q ss_pred HHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC
Q 006812 185 RMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN 264 (630)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 264 (630)
++ .|...-+...+|..+..+|+..+|..+|.+|++.. |..+.+|.+||.++..+|+
T Consensus 178 ql----------------nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--------p~fAiawsnLg~~f~~~Ge 233 (966)
T KOG4626|consen 178 QL----------------NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--------PCFAIAWSNLGCVFNAQGE 233 (966)
T ss_pred hc----------------CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--------CceeeeehhcchHHhhcch
Confidence 98 45556667789999999999999999999999544 5668999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc
Q 006812 265 FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL 344 (630)
Q Consensus 265 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 344 (630)
...|+.+|++|+.+. |....+|.+||.+|...+.++.|+.+|.+|+.+ .|..+.++.++|.+|+.+
T Consensus 234 i~~aiq~y~eAvkld--------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l------rpn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 234 IWLAIQHYEEAVKLD--------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL------RPNHAVAHGNLACIYYEQ 299 (966)
T ss_pred HHHHHHHHHHhhcCC--------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc------CCcchhhccceEEEEecc
Confidence 999999999999864 455788999999999999999999999999887 788999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc
Q 006812 345 GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM 424 (630)
Q Consensus 345 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 424 (630)
|..+-|+..|+++++..+. ...+|.+||.++...|+..+|..+|.+++.+. |..+.+.++||.+|..+
T Consensus 300 G~ldlAI~~Ykral~~~P~----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPN----FPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQ 367 (966)
T ss_pred ccHHHHHHHHHHHHhcCCC----chHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHh
Confidence 9999999999999996544 35599999999999999999999999999987 67789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812 425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY 504 (630)
Q Consensus 425 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 504 (630)
|.+++|..+|.+++++.... +....+||.+|.++|++++|+.+|++++.| .|..+.++.++|..|
T Consensus 368 ~~~e~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTY 432 (966)
T ss_pred ccchHHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHH
Confidence 99999999999999974322 457899999999999999999999999984 588999999999999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812 505 LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP 571 (630)
Q Consensus 505 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 571 (630)
..+|+.+.|+.+|.+|+. -+|..+++..+||.+|...|+..+|+.-|+.|+++-+.+.+
T Consensus 433 ke~g~v~~A~q~y~rAI~--------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQ--------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHhhhHHHHHHHHHHHHh--------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 999999999999999999 56999999999999999999999999999999987655444
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-40 Score=303.29 Aligned_cols=378 Identities=18% Similarity=0.159 Sum_probs=337.8
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
.+|+...+|.++|.++..+| +.+.|..+|.+++++.+ ....+...+|.++-..|+..+|...|.+|+..
T Consensus 145 l~p~fida~inla~al~~~~-~~~~a~~~~~~alqlnP----------~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~ 213 (966)
T KOG4626|consen 145 LKPKFIDAYINLAAALVTQG-DLELAVQCFFEALQLNP----------DLYCARSDLGNLLKAEGRLEEAKACYLKAIET 213 (966)
T ss_pred cCchhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCc----------chhhhhcchhHHHHhhcccchhHHHHHHHHhh
Confidence 35888999999999999999 99999999999998863 34556678999999999999999999999998
Q ss_pred HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFK 266 (630)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (630)
.|..+.+|.+||.++..+|+...|+.+|++|+. -+|....+|.+||.+|...+.|+
T Consensus 214 ----------------qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 214 ----------------QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred ----------------CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--------CCCcchHHHhhHHHHHHHHhcch
Confidence 456778899999999999999999999999994 44667899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC
Q 006812 267 EALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK 346 (630)
Q Consensus 267 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 346 (630)
+|+..|.+|+.+ .|..+.++.++|.+|+.+|..+-|+..|++++++ .|....++.++|..+-..|+
T Consensus 270 ~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~------~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 270 RAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL------QPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc------CCCchHHHhHHHHHHHhccc
Confidence 999999999985 4456788999999999999999999999999997 78899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCC
Q 006812 347 FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNE 426 (630)
Q Consensus 347 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 426 (630)
..+|..+|.+++...+.. +.+.++||.+|..+|.+++|..+|.+++++. |..+.+.++||.+|..+|+
T Consensus 336 V~ea~~cYnkaL~l~p~h----adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNH----ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred hHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhccc
Confidence 999999999999966544 5599999999999999999999999999987 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 006812 427 FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE 506 (630)
Q Consensus 427 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 506 (630)
+++|+.+|++++.|. +.-+.++.++|..|..+|+.+.|+.+|.+|+. -+|..+++..+||.+|..
T Consensus 404 l~~Ai~~YkealrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--------~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--------INPTFAEAHSNLASIYKD 468 (966)
T ss_pred HHHHHHHHHHHHhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--------cCcHHHHHHhhHHHHhhc
Confidence 999999999999972 22367899999999999999999999999998 468999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 507 LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 507 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
.|+..+|+..|+.++.+ .|+..+++.+++.++.-..++.+=-+.+.+..++.+.
T Consensus 469 sGni~~AI~sY~~aLkl--------kPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrd 522 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALKL--------KPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRD 522 (966)
T ss_pred cCCcHHHHHHHHHHHcc--------CCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 99999999999999994 4666689999998887666665555555666555544
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.7e-32 Score=280.08 Aligned_cols=413 Identities=17% Similarity=0.136 Sum_probs=315.7
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL 190 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 190 (630)
.+..+...|..++..| +|++|+..|++++.+.+. ...+.++|.+|..+|++++|+..+++++.+
T Consensus 126 ~a~~~k~~G~~~~~~~-~~~~Ai~~y~~al~~~p~-----------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---- 189 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNK-DFNKAIKLYSKAIECKPD-----------PVYYSNRAACHNALGDWEKVVEDTTAALEL---- 189 (615)
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----
Confidence 3567889999999999 999999999999976521 236889999999999999999999999988
Q ss_pred hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------H------------Hhccch--
Q 006812 191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE-----------L------------ILEEDS-- 245 (630)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------~------------~~~~~~-- 245 (630)
.|....+++.+|.+|..+|++++|+..|..+..+.. . .+....
T Consensus 190 ------------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~ 257 (615)
T TIGR00990 190 ------------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPEN 257 (615)
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344467888999999999999999988765532110 0 000000
Q ss_pred ------------------------------HHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 006812 246 ------------------------------RELGVANRDLAEAF---VAVLNFKEALPFGLKALEIHKKGLGHNSVEVAH 292 (630)
Q Consensus 246 ------------------------------~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (630)
+.....+..++..+ ...++|++|+..|+++++.. ...+..+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-----~~~~~~a~ 332 (615)
T TIGR00990 258 LPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-----KLGEKEAI 332 (615)
T ss_pred CCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-----CCChhhHH
Confidence 00001112222211 12357889999998888753 13567778
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812 293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVF 372 (630)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 372 (630)
++..+|.++..+|++++|+..+++++.+ .|....++..+|.++...|++++|+..++++++..+.+ ..++
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~ 402 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED----PDIY 402 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHH
Confidence 8999999999999999999999999887 67788899999999999999999999999999875544 4589
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchh
Q 006812 373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG 452 (630)
Q Consensus 373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 452 (630)
..+|.++...|++++|+.+|++++.+. |.....+..+|.++...|++++|+..+++++... +. ..
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----P~--~~ 467 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-----PE--AP 467 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC--Ch
Confidence 999999999999999999999998875 4566788999999999999999999999999852 22 24
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 532 (630)
.++..+|.++...|++++|+..|++++.+.... ...+......+...+..+...|++++|+.++++++.+ +
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~ 538 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--------D 538 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------C
Confidence 578899999999999999999999999854321 1111222223333334445579999999999999984 3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHHHHH
Q 006812 533 ADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS-AQDELREARRLLEQLKIK 590 (630)
Q Consensus 533 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~A~~~~~~~~~~ 590 (630)
|+...++..+|.++...|++++|+.+|++++++.+..+.. ....+.+|.++..++.+.
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~~~ 597 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555688999999999999999999999999987653321 222344455554444433
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=7.8e-31 Score=250.78 Aligned_cols=397 Identities=27% Similarity=0.323 Sum_probs=314.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
...+.........++.+.+.+....++++..+.. .. ......+......+...+.+++|....++...+
T Consensus 89 ~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~--~~---~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~------ 157 (508)
T KOG1840|consen 89 QKLLAQVRRLCQEGEWLEDELALTQRALKQSERS--VA---QLEEEKLHLLAAIQALLLQLDEAEQGQEQAAVT------ 157 (508)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH--HH---hHHHHHHHHHHHHHHHHHHhhhhhccccccccc------
Confidence 3344444444444445666666666666555443 00 011112333444445555556655555443322
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (630)
+. .-.++......-+.+.....+...+.+..+..+..+|....+...++..|..+|+|++|+..+
T Consensus 158 -----------~~----~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~ 222 (508)
T KOG1840|consen 158 -----------PV----KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLC 222 (508)
T ss_pred -----------ch----hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 00 111333333333333556666666667777777888999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 006812 273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAIN 352 (630)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 352 (630)
+.++++..+..|.+++.+...+..+|.+|..++++++|+..|++|+.+.+.
T Consensus 223 k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~----------------------------- 273 (508)
T KOG1840|consen 223 KQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE----------------------------- 273 (508)
T ss_pred HHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-----------------------------
Confidence 999999888888888888888877888888888888888777777776432
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 006812 353 TLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAIS 432 (630)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 432 (630)
.++.+++.++.++.+||.+|...|++++|..++++|++|..+..+..++.++..+.+++.++..++++++|..
T Consensus 274 -------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 274 -------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred -------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 2234567777788888888888899999999999999999888888899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChh
Q 006812 433 LLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQ 511 (630)
Q Consensus 433 ~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 511 (630)
++++++++....++..++. ..++.+||.+|..+|++++|.++|++|+.+.++..+..++.....+++||..|.+.+++.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 9999999999998888854 678899999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 512 SAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 512 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
+|...|.++..|. +..|+++|++...|.+|+.+|..+|++++|.++.+.++...+..+..
T Consensus 427 ~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~ 486 (508)
T KOG1840|consen 427 EAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGT 486 (508)
T ss_pred hHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999 99999999999999999999999999999999999999988884443
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=4.4e-29 Score=238.78 Aligned_cols=338 Identities=19% Similarity=0.177 Sum_probs=289.8
Q ss_pred hhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Q 006812 163 MGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE 242 (630)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (630)
+.......-+.+...........+..+..+.. .|....+...++..|..+|+|+.|+..+++++++..+..+
T Consensus 163 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G 234 (508)
T KOG1840|consen 163 LADLGGEKQEEDSSIEGTLKGLDIQAKGLGDE--------DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG 234 (508)
T ss_pred HHhhccccccccccchhhHHHHHHHHHhcccC--------CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC
Confidence 33333333333355555555555544444433 5666677778999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 006812 243 EDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK 322 (630)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 322 (630)
.+++.++..+..+|.+|..+++|.+|+.+|++|+.+.+..+|.+|+.++.++.+||.+|...|++++|..++++|+++.+
T Consensus 235 ~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 235 LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888854
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812 323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK 402 (630)
Q Consensus 323 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 402 (630)
.. ....++.++..+.+++.++...+++++|..++++++++....
T Consensus 315 ~~------------------------------------~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 315 KL------------------------------------LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred Hh------------------------------------hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 41 112455566778888888888899999999999999998888
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812 403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAER 481 (630)
Q Consensus 403 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 481 (630)
.+.+++.++..+.++|.+|..+|++++|.+++++++.+.+...+..+.. ...++++|..|.+.+++.+|...|.++..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999887766655 567799999999999999999999999999
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006812 482 LKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKA 545 (630)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 545 (630)
. +..|+++|++...+.+||.+|..+|++++|+++.++++..++..++..++.....-..++..
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADL 501 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHH
Confidence 9 88999999999999999999999999999999999999999999988877766544444433
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=6.1e-28 Score=267.28 Aligned_cols=398 Identities=16% Similarity=0.144 Sum_probs=289.5
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG 188 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 188 (630)
|.....+..+|.++...| ++++|+.+|+++++..+ ....++..+|.++...|++++|+..|++++..
T Consensus 462 ~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 528 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEP----------DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-- 528 (899)
T ss_pred CCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC----------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 445567888899998888 99999999999886542 23446677889999999999999999888876
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHH
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEA 268 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (630)
.|....++..++.++...|++++|+.++++++... |.....+..++.+|...|++++|
T Consensus 529 --------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 529 --------------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred --------------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHH
Confidence 12223566778888888888888888888877432 22345677788888888888888
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 006812 269 LPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE 348 (630)
Q Consensus 269 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 348 (630)
+.++++++...+ .....+..+|.++...|++++|+..|+++++. .|....++..++.++...|+++
T Consensus 587 ~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 587 LAILNEAADAAP--------DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHH
Confidence 888888775322 22356778888888888888888888887765 4555667778888888888888
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812 349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE 428 (630)
Q Consensus 349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 428 (630)
+|+..+++++...+.+ ..++..++.++...|++++|...++...... +.....+..+|.++...|+++
T Consensus 653 ~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 653 KAITSLKRALELKPDN----TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--------PKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCChHHHHHHHHHHHHCCCHH
Confidence 8888888888754443 3467777888888888888888777665432 233456677788888888888
Q ss_pred HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812 429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD 508 (630)
Q Consensus 429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 508 (630)
+|+..|++++... + ....+..++.++...|++++|...++++++ .+|....++..+|.+|...|
T Consensus 721 ~A~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 721 AAIQAYRKALKRA-----P---SSQNAIKLHRALLASGNTAEAVKTLEAWLK--------THPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHHHhhC-----C---CchHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCc
Confidence 8888888887741 1 114566778888888888888888887776 23455667778888888888
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------CchhHHHH
Q 006812 509 RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP---------SAQDELRE 579 (630)
Q Consensus 509 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~ 579 (630)
++++|+.+|+++++. +|+...++.+++.++...|+ .+|+.++++++++.+.... ...+++++
T Consensus 785 ~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 785 DYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 888888888888763 34445677778888888888 7788888887765322110 13456777
Q ss_pred HHHHHHHHHHHhc
Q 006812 580 ARRLLEQLKIKAS 592 (630)
Q Consensus 580 A~~~~~~~~~~~~ 592 (630)
|...++++.+...
T Consensus 856 A~~~~~~a~~~~~ 868 (899)
T TIGR02917 856 ALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhhCC
Confidence 7777777776543
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=4.5e-28 Score=251.07 Aligned_cols=361 Identities=16% Similarity=0.075 Sum_probs=279.4
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH----
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML---- 187 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 187 (630)
...+.++|.+|...| ++++|+..+.+++++. |....++..+|.+|..+|++++|+..|..+..+.
T Consensus 160 ~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~----------p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 160 PVYYSNRAACHNALG-DWEKVVEDTTAALELD----------PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 457899999999999 9999999999999864 2346788999999999999999998886553220
Q ss_pred -------h------------HhhhcCCCCCCc--------------------------cchhhHHHHHHHHHHHH---HH
Q 006812 188 -------G------------RLEEEGLGGSVE--------------------------DIKPIMHAVHLELANVK---TA 219 (630)
Q Consensus 188 -------~------------~~~~~~~~~~~~--------------------------~~~~~~~~~~~~l~~~~---~~ 219 (630)
. ..... .+... +..+.....+..++..+ ..
T Consensus 229 ~~~~~~~~~~l~~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~ 306 (615)
T TIGR00990 229 EQSAQAVERLLKKFAESKAKEILET--KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKA 306 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhh
Confidence 0 00000 00000 00011111122233222 22
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 006812 220 MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGV 299 (630)
Q Consensus 220 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 299 (630)
.++|++|+..|+++++.. ...|..+.++..+|.++...|++++|+..+++++++.+ .....+..+|.
T Consensus 307 ~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--------~~~~~~~~la~ 373 (615)
T TIGR00990 307 DESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--------RVTQSYIKRAS 373 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHH
Confidence 467888888888887543 23466788999999999999999999999999998643 34567889999
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Q 006812 300 IYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKAL 379 (630)
Q Consensus 300 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 379 (630)
++...|++++|+.++++++++ +|....++..+|.++...|++++|+..|++++...+.+ ...+..+|.++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~----~~~~~~la~~~ 443 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKL------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF----IFSHIQLGVTQ 443 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC----HHHHHHHHHHH
Confidence 999999999999999999886 56778899999999999999999999999999975543 45788999999
Q ss_pred HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 006812 380 CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIG 459 (630)
Q Consensus 380 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 459 (630)
...|++++|+..+++++... |....++..+|.++...|++++|+..|++++.+.+.... .......+...+
T Consensus 444 ~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a 514 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKA 514 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHH
Confidence 99999999999999998765 455678899999999999999999999999997544321 111222223333
Q ss_pred -HHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 460 -WLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 460 -~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
.++...|++++|+.++++++.+ +|....++..+|.++..+|++++|+.+|++++++..
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 3444579999999999999983 355566888999999999999999999999998753
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.6e-27 Score=261.21 Aligned_cols=426 Identities=13% Similarity=0.048 Sum_probs=310.0
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-----------Hh----------------hhCCCCChhHH--H
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLD-----------KD----------------ERNNRPSLLVA--M 158 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~-----------~~----------------~~~~~~~~~~~--~ 158 (630)
+|....+++.+|.+++..| ++++|+..+++++.... .. ........... .
T Consensus 177 ~P~~~~~~~~LA~ll~~~g-~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSG-RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred CCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 4667788899999999998 99999999998754210 00 00000000000 0
Q ss_pred ---------------HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCH
Q 006812 159 ---------------CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRR 223 (630)
Q Consensus 159 ---------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 223 (630)
....+|.++...|++++|+..|++++.. .|....++..+|.++...|++
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~----------------~P~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA----------------NPKDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCH
Confidence 0123488899999999999999999997 233356788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchH------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812 224 EEALEHLQKCLEIKELILEEDSR------ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL 297 (630)
Q Consensus 224 ~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (630)
++|+.+|+++++..+........ ........+|.++...|++++|+..|++++.+.+ ....++..+
T Consensus 320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P--------~~~~a~~~L 391 (1157)
T PRK11447 320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN--------TDSYAVLGL 391 (1157)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHH
Confidence 99999999999765321100000 0112334568899999999999999999998644 224567889
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHHcC------------CChh------------------------HHHHHHHHHHHH
Q 006812 298 GVIYSGLEEHQKALEQNELSQKVLKTWG------------LSSE------------------------LLRAEIDAANMQ 341 (630)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~------------~~~~------------------------~~~~~~~la~~~ 341 (630)
|.++...|++++|+.+|++++++..... ..+. ....+..+|.++
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999887521100 0000 011233467778
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812 342 IALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQY 421 (630)
Q Consensus 342 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 421 (630)
...|++++|+..|+++++..+.+ ..++..+|.+|...|++++|+..+++++... |.....++.++..+
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--------P~~~~~~~a~al~l 539 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQK--------PNDPEQVYAYGLYL 539 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 88999999999999999876654 3478899999999999999999999987643 23334455556666
Q ss_pred HHcCCHHHHHHHHHHH-------------------------------------HHHHHhCCCCCCchhHHHHHHHHHHHH
Q 006812 422 ESMNEFETAISLLKRT-------------------------------------LALLEKLPQAQHSEGSVSARIGWLLLL 464 (630)
Q Consensus 422 ~~~g~~~~A~~~~~~a-------------------------------------l~~~~~~~~~~~~~~~~~~~la~~~~~ 464 (630)
...+++++|+..++++ +.+.+. .+.....+..+|.++..
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----CCCCchHHHHHHHHHHH
Confidence 6666666666655432 111111 11223467889999999
Q ss_pred cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006812 465 TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK 544 (630)
Q Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 544 (630)
.|++++|+..|+++++. .|....++..++.+|...|++++|+..+++++. ..|+...++..+|.
T Consensus 616 ~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--------~~p~~~~~~~~la~ 679 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--------TANDSLNTQRRVAL 679 (1157)
T ss_pred cCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--------cCCCChHHHHHHHH
Confidence 99999999999999983 466677899999999999999999999998876 33455567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCC---------------CchhHHHHHHHHHHHHHHH
Q 006812 545 AYSSMGSYTLAIEFQQRAIDAWESHGP---------------SAQDELREARRLLEQLKIK 590 (630)
Q Consensus 545 ~~~~~g~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~A~~~~~~~~~~ 590 (630)
++...|++++|.++|++++...+...+ ...++.++|+..|++....
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999876543222 1346788999999988653
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.4e-27 Score=264.44 Aligned_cols=395 Identities=18% Similarity=0.164 Sum_probs=322.2
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
+|....+++.+|.++...| ++++|+..|++++...+ ....++..++.++...|++++|+..+++++..
T Consensus 495 ~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 562 (899)
T TIGR02917 495 EPDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTIDP----------KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL- 562 (899)
T ss_pred CCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCc----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 3556678889999999999 99999999999887542 23557788999999999999999999999876
Q ss_pred hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812 188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE 267 (630)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (630)
.+.....+..++.++...|++++|+..++++++.. |....++..+|.++...|++++
T Consensus 563 ---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 563 ---------------NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred ---------------CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHH
Confidence 11223456789999999999999999999987432 3335678999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH
Q 006812 268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKF 347 (630)
Q Consensus 268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 347 (630)
|+..|+++++..+ .....+..+|.++...|++++|+.++++++.. .|....++..++.++...|++
T Consensus 620 A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 620 AVSSFKKLLALQP--------DSALALLLLADAYAVMKNYAKAITSLKRALEL------KPDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHHHHHhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCH
Confidence 9999999987533 22356778999999999999999999988875 566778889999999999999
Q ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCH
Q 006812 348 EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEF 427 (630)
Q Consensus 348 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 427 (630)
++|+.+++.+....+.. ...+..+|.++...|++++|+..+++++.... .. ..+..++.++...|++
T Consensus 686 ~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--------~~-~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKA----ALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--------SS-QNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHHHHhhCcCC----hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--------Cc-hHHHHHHHHHHHCCCH
Confidence 99999999888754433 44778899999999999999999999887641 11 5667899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 006812 428 ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL 507 (630)
Q Consensus 428 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 507 (630)
++|...+++++.. . +....++..+|.++...|++++|+.+|+++++. +|....++..+|.++...
T Consensus 753 ~~A~~~~~~~l~~-----~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 753 AEAVKTLEAWLKT-----H--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHHHh-----C--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhc
Confidence 9999999998874 1 223567899999999999999999999999973 456677889999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------CchhHHH
Q 006812 508 DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP---------SAQDELR 578 (630)
Q Consensus 508 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~ 578 (630)
|+ .+|+.++++++.+. |+...++..+|.++...|++++|..+|+++++....... ...|+.+
T Consensus 818 ~~-~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA--------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888 (899)
T ss_pred Cc-HHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence 99 88999999998842 333457788999999999999999999999976443110 1446777
Q ss_pred HHHHHHHHHH
Q 006812 579 EARRLLEQLK 588 (630)
Q Consensus 579 ~A~~~~~~~~ 588 (630)
+|+.+++++.
T Consensus 889 ~A~~~~~~~~ 898 (899)
T TIGR02917 889 EARKELDKLL 898 (899)
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.3e-26 Score=255.75 Aligned_cols=388 Identities=12% Similarity=0.054 Sum_probs=295.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCC
Q 006812 117 KIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG 196 (630)
Q Consensus 117 ~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 196 (630)
..|..+...| ++++|+..|+++++..+ ..+.++..+|.++...|++++|+.+|+++++..
T Consensus 274 ~~G~~~~~~g-~~~~A~~~l~~aL~~~P----------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--------- 333 (1157)
T PRK11447 274 AQGLAAVDSG-QGGKAIPELQQAVRANP----------KDSEALGALGQAYSQQGDRARAVAQFEKALALD--------- 333 (1157)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------
Confidence 4588888888 99999999999998752 235678899999999999999999999999872
Q ss_pred CCCccchh-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHH
Q 006812 197 GSVEDIKP-------IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEAL 269 (630)
Q Consensus 197 ~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (630)
|....... ........+|.++...|++++|+..|++++++. |....++..+|.++...|++++|+
T Consensus 334 p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 334 PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 22221110 011233456889999999999999999999653 333567889999999999999999
Q ss_pred HHHHHHHHHHhhhcC----------CCCHH------------------------HHHHHHHHHHHHhccccHHHHHHHHH
Q 006812 270 PFGLKALEIHKKGLG----------HNSVE------------------------VAHDRRLLGVIYSGLEEHQKALEQNE 315 (630)
Q Consensus 270 ~~~~~al~~~~~~~~----------~~~~~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (630)
.+|++++++.+.... ...++ ....+..+|.++...|++++|+..|+
T Consensus 406 ~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 406 RYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999976442100 00000 01223456777888999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812 316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395 (630)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 395 (630)
+++++ .|+...++..+|.+|...|++++|+..+++++...+.+. ..++.++..+...+++++|+..++++
T Consensus 486 ~Al~~------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~----~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 486 QRLAL------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP----EQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 99887 677788899999999999999999999999998655443 24555555666666666666655432
Q ss_pred H-------------------------------------HHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 396 C-------------------------------------GILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTL 438 (630)
Q Consensus 396 ~-------------------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 438 (630)
. .++.. .|.....+..+|.++...|++++|+..|++++
T Consensus 556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al 630 (1157)
T PRK11447 556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL 630 (1157)
T ss_pred CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11111 12334567889999999999999999999999
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH
Q 006812 439 ALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA 518 (630)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 518 (630)
+. .+. ...++..++.+|...|++++|+..++++++ ..|....++..+|.++...|++++|+.+|+
T Consensus 631 ~~-----~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 631 TR-----EPG--NADARLGLIEVDIAQGDLAAARAQLAKLPA--------TANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred Hh-----CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--------cCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 86 222 346889999999999999999999998876 345556678889999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 519 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
+++...... +.....+.++..+|.++...|++++|+..|++|+.
T Consensus 696 ~al~~~~~~--~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 696 RLIPQAKSQ--PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhhhCccC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 998754221 11112456777889999999999999999999985
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.4e-26 Score=225.16 Aligned_cols=396 Identities=17% Similarity=0.125 Sum_probs=266.4
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG 188 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 188 (630)
+..+..++.+|..|+.+| +|++|..+|.++++..+.. ....++.+|..|...|+++.|..+|++.+..
T Consensus 304 ~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~~~d~---------~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-- 371 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKADNDN---------FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-- 371 (1018)
T ss_pred HHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHccCCCC---------ccccccchhHHHHHhchHHHHHHHHHHHHHh--
Confidence 344555666666666666 6666666666665543111 2334455666666666666666666666555
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMG----RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN 264 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 264 (630)
.|....+...||.+|...+ ..+.|..+..++++. .|....+|..++.++....-
T Consensus 372 --------------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 372 --------------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred --------------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcCh
Confidence 1222333444555555554 334444444444422 24446677777777765544
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc-CCC---hhHHHHHHHHHHH
Q 006812 265 FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW-GLS---SELLRAEIDAANM 340 (630)
Q Consensus 265 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~---~~~~~~~~~la~~ 340 (630)
+ .++..|.+|+.+....... .-...++++|..++..|++.+|..+|..|...+... ..+ ...+...+++|.+
T Consensus 430 ~-~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 430 W-ASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred H-HHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 4 4488888888777654333 223567788888888888888888888888774422 111 1234567788888
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 006812 341 QIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ 420 (630)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 420 (630)
+...++++.|.+.|..++. .+|....++..+|.+....++..+|...+..++.+.. ....++..+|.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilk----ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--------~np~arsl~G~~ 573 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILK----EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS--------SNPNARSLLGNL 573 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHH----HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc--------CCcHHHHHHHHH
Confidence 8888888888888888887 4455566788888777777888888888888877653 233677778888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc-----CChhhHHHHHHHHHHHHHHhcCCCCccHHH
Q 006812 421 YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT-----GKVPQAIPYLESAAERLKESFGPKHFGVGY 495 (630)
Q Consensus 421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 495 (630)
|....++..|.+-|+..+.-.. ..+++.+...||.+++.. .+.+.+...+.+|++++.+.+. .+|....
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~-----~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-~dpkN~y 647 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTS-----TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-NDPKNMY 647 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhc-----cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh-cCcchhh
Confidence 8888888888887776655311 123455667888877652 2335566666666666655543 5688888
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
+-+.+|.++...|++.+|...|.++.+-.. +...+|.|+|.||..+|+|-.|++.|+.+++.+..
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~--------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATS--------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHh--------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999887432 33468999999999999999999999999977663
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=2.5e-25 Score=229.32 Aligned_cols=358 Identities=13% Similarity=0.037 Sum_probs=288.2
Q ss_pred HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812 161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI 240 (630)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (630)
...+..+...|++++|+..++..+.. .|.-..+++.+|.+....|++++|+..|+++++..
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~----------------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--- 106 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLT----------------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--- 106 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHh----------------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---
Confidence 44667788999999999999999887 22334567788999999999999999999998544
Q ss_pred hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812 241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320 (630)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 320 (630)
|....++..+|.++...|++++|+..+++++.+.+ ....++..++.++...|++++|+..+.++...
T Consensus 107 -----P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P--------~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 107 -----VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS--------GNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 33467789999999999999999999999998643 23456778899999999999999999866554
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812 321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD 400 (630)
Q Consensus 321 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 400 (630)
.|.....+..++ .+...|++++|+..+++++...+.... .....++.++...|++++|+..+++++...
T Consensus 174 ------~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~~~- 242 (656)
T PRK15174 174 ------VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ---ESAGLAVDTLCAVGKYQEAIQTGESALARG- 242 (656)
T ss_pred ------CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch---hHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 333334444443 478899999999999998876432222 234566888999999999999999998763
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHH
Q 006812 401 KKETISPEEVADAYSEISMQYESMNEFET----AISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLE 476 (630)
Q Consensus 401 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (630)
|....++..+|.++...|++++ |+..|++++.+ .+. ...++..+|.++...|++++|+..++
T Consensus 243 -------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~--~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 243 -------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSD--NVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred -------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCC--CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556788999999999999986 89999999886 222 34688999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 006812 477 SAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556 (630)
Q Consensus 477 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 556 (630)
+++.+ +|....++..+|.++...|++++|+..|++++. .+|+....+..+|.++...|++++|+
T Consensus 309 ~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--------~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 309 QSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--------EKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHCCCHHHHH
Confidence 99983 456667888999999999999999999999988 34555556677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHhcCC
Q 006812 557 EFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGA 594 (630)
Q Consensus 557 ~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 594 (630)
..|++++++..... ...+.+|+..|.+.......+
T Consensus 373 ~~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 373 SVFEHYIQARASHL---PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCc
Confidence 99999998866644 355668888888887766444
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-25 Score=218.47 Aligned_cols=394 Identities=18% Similarity=0.154 Sum_probs=313.7
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
..|....+++..+.+.+..+ +|..|+.+|++++.+.+.. . +.....+|.|+..+|+.+.|+..|++++++
T Consensus 159 ~sp~Nil~LlGkA~i~ynkk-dY~~al~yyk~al~inp~~--~-------aD~rIgig~Cf~kl~~~~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKK-DYRGALKYYKKALRINPAC--K-------ADVRIGIGHCFWKLGMSEKALLAFERALQL 228 (1018)
T ss_pred hCCcchHHHHHHHHHHhccc-cHHHHHHHHHHHHhcCccc--C-------CCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence 34666677777777888888 9999999999999888665 1 222345788999999999999999999998
Q ss_pred HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Q 006812 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR---REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL 263 (630)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (630)
.|..+.++..||.+-....+ +..+...+.++..+. +..+.+++.|+..|+..|
T Consensus 229 ----------------dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--------~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 229 ----------------DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--------NENPVALNHLANHFYFKK 284 (1018)
T ss_pred ----------------ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHhhcc
Confidence 34455666677776655544 445555555554332 233577899999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh-HHHHHHHHHHHHH
Q 006812 264 NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE-LLRAEIDAANMQI 342 (630)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~ 342 (630)
+|..+..+...++.... ..+..+..++++|.+|..+|++++|..+|.++.+. +++ ....+..+|.+|.
T Consensus 285 dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~------~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA------DNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred cHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc------CCCCccccccchhHHHH
Confidence 99999999999987553 45677888999999999999999999999988775 333 3777889999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 006812 343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQE----KFADAKRCLEIACGILDKKETISPEEVADAYSEIS 418 (630)
Q Consensus 343 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 418 (630)
..|+++.|...|++++...+.+. .+...+|.+|...+ ..+.|..++.+++... |....+|..++
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~----etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--------~~d~~a~l~la 421 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNY----ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--------PVDSEAWLELA 421 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchH----HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--------cccHHHHHHHH
Confidence 99999999999999999766554 37778888888775 4566666766666554 56778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC--ccHHHH
Q 006812 419 MQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH--FGVGYI 496 (630)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~ 496 (630)
.++....-+ .++.+|..|+.+....... ....+++++|..++..|++.+|...|.+|+.........+. ......
T Consensus 422 ql~e~~d~~-~sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 422 QLLEQTDPW-ASLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHhcChH-HHHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 998765544 5599999999998887554 33468899999999999999999999999997543322221 223456
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
.+++|.++...++++.|.+.|...+. .||.+++++..+|.+....++..+|..++..++.+-..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilk--------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILK--------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHH--------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 88999999999999999999999998 78999999999998888899999999999999976443
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=9.8e-25 Score=224.92 Aligned_cols=365 Identities=13% Similarity=0.015 Sum_probs=283.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCC
Q 006812 116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGL 195 (630)
Q Consensus 116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 195 (630)
......+...| ++++|+..++..+... |....++..+|.+....|++++|+..+++++.+
T Consensus 46 ~~~~~~~~~~g-~~~~A~~l~~~~l~~~----------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------- 105 (656)
T PRK15174 46 ILFAIACLRKD-ETDVGLTLLSDRVLTA----------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--------- 105 (656)
T ss_pred HHHHHHHHhcC-CcchhHHHhHHHHHhC----------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---------
Confidence 34455566777 9999999999988765 234567788999999999999999999999988
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006812 196 GGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKA 275 (630)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 275 (630)
.|....++..+|.++...|++++|+..|++++++. |....++..+|.++...|++++|+..++++
T Consensus 106 -------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 106 -------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred -------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 33334567889999999999999999999998653 333567889999999999999999999987
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812 276 LEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLK 355 (630)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (630)
+...+ +++. .+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..++
T Consensus 171 ~~~~P-----~~~~---a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-----~~~~~~~~~~l~~~l~~~g~~~eA~~~~~ 236 (656)
T PRK15174 171 AQEVP-----PRGD---MIATCL-SFLNKSRLPEDHDLARALLPFF-----ALERQESAGLAVDTLCAVGKYQEAIQTGE 236 (656)
T ss_pred HHhCC-----CCHH---HHHHHH-HHHHcCCHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 76543 2222 233333 4788999999999988765541 11222334566888999999999999999
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHhhccHHH----HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 006812 356 GVVRQTEKESETRALVFISMGKALCNQEKFAD----AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAI 431 (630)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 431 (630)
+++...+.+ ..++..+|.++...|++++ |+..+++++.+. |....++..+|.++...|++++|+
T Consensus 237 ~al~~~p~~----~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 237 SALARGLDG----AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred HHHhcCCCC----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999865443 5588899999999999986 789999988865 566688999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChh
Q 006812 432 SLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQ 511 (630)
Q Consensus 432 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 511 (630)
.++++++.+ .+.. ..++..+|.++...|++++|+..|++++. .+|.....+..+|.++...|+++
T Consensus 305 ~~l~~al~l-----~P~~--~~a~~~La~~l~~~G~~~eA~~~l~~al~--------~~P~~~~~~~~~a~al~~~G~~d 369 (656)
T PRK15174 305 PLLQQSLAT-----HPDL--PYVRAMYARALRQVGQYTAASDEFVQLAR--------EKGVTSKWNRYAAAALLQAGKTS 369 (656)
T ss_pred HHHHHHHHh-----CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHCCCHH
Confidence 999999986 2222 35778899999999999999999999987 24555556667899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812 512 SAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQ 559 (630)
Q Consensus 512 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 559 (630)
+|+..|++++++..+.. .+....+...+...+...+...+...+.
T Consensus 370 eA~~~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~~~W~ 414 (656)
T PRK15174 370 EAESVFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPERLDWA 414 (656)
T ss_pred HHHHHHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccchhhHH
Confidence 99999999999754432 1223345566666666666554443333
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-24 Score=195.95 Aligned_cols=397 Identities=13% Similarity=0.066 Sum_probs=303.5
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhH
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGR 189 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 189 (630)
..+..+-..|..++..+ +|++||++|.+|+.+.++ .+..|.+++-+|...|+|++.++...+++++
T Consensus 113 k~A~~lK~~GN~~f~~k-kY~eAIkyY~~AI~l~p~----------epiFYsNraAcY~~lgd~~~Vied~TkALEl--- 178 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNK-KYDEAIKYYTQAIELCPD----------EPIFYSNRAACYESLGDWEKVIEDCTKALEL--- 178 (606)
T ss_pred HHHHHHHhhhhhhhhcc-cHHHHHHHHHHHHhcCCC----------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---
Confidence 34567788999999999 999999999999988733 2567889999999999999999999999998
Q ss_pred hhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHH------------------HHHH-----HHHHHhccc-h
Q 006812 190 LEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQ------------------KCLE-----IKELILEED-S 245 (630)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~-----~~~~~~~~~-~ 245 (630)
.|.+..++++.+..+..+|++++|+.-.. +.|. -.+..+..+ .
T Consensus 179 -------------~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~ 245 (606)
T KOG0547|consen 179 -------------NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRP 245 (606)
T ss_pred -------------CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 67788999999999999999999876432 1111 111111111 1
Q ss_pred ---HH--HHHHHHH--------------------HHHH--HHHhc---CHHHHHHHHHHHHHHHhhhcCCC-----CHHH
Q 006812 246 ---RE--LGVANRD--------------------LAEA--FVAVL---NFKEALPFGLKALEIHKKGLGHN-----SVEV 290 (630)
Q Consensus 246 ---~~--~~~~~~~--------------------la~~--~~~~g---~~~~A~~~~~~al~~~~~~~~~~-----~~~~ 290 (630)
|. ...+|.. +... +...+ .|.+|...+.+...........+ -...
T Consensus 246 p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 246 PVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM 325 (606)
T ss_pred CCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence 10 1111111 1111 11122 46666666666554443222111 1245
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812 291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL 370 (630)
Q Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 370 (630)
+.++...|..+.-.|++..|...|+.++.+ .+.....|+.+|.+|....+.++....|.++..+.+.+++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d---- 395 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD---- 395 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc----
Confidence 778888899999999999999999999887 5555555999999999999999999999999998777766
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812 371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS 450 (630)
Q Consensus 371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 450 (630)
+|+..|+++.-++++++|..-|++++.+. |..+..+..++.+..++++++++...|+++..-++..
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~--------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------ 461 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLD--------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------ 461 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------
Confidence 89999999999999999999999999886 7888999999999999999999999999998864333
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHhcC
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY-LELDRPQSAAQVFAFAKDIMDVSLG 529 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~ 529 (630)
+.++...|.++..+++|++|++.|..++++-....+ .+. .+..+.+-|.+. .-.+++..|+.++++|++
T Consensus 462 -~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~-~~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e------- 531 (606)
T KOG0547|consen 462 -PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL-IIV-NAAPLVHKALLVLQWKEDINQAENLLRKAIE------- 531 (606)
T ss_pred -chHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc-ccc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHc-------
Confidence 358888999999999999999999999996433110 011 111222222222 234899999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
-+|..-.++..||.+..++|+.++|+++|++++.+.+.
T Consensus 532 -~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 532 -LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred -cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 56777789999999999999999999999999987665
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=4.5e-23 Score=217.50 Aligned_cols=396 Identities=11% Similarity=0.000 Sum_probs=289.9
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
++..+.++..+|..+...| ++++|+..|++++...+. ...++..+|.++...|++++|+..+++++..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~----------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~- 112 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQ----------NDDYQRGLILTLADAGQYDEALVKAKQLVSG- 112 (765)
T ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 3566777899999999999 999999999999987522 2445678999999999999999999999987
Q ss_pred hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812 188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE 267 (630)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (630)
.|.... +..+|.++...|++++|+..+++++++. |....++..+|.++...|..++
T Consensus 113 ---------------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 113 ---------------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred ---------------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHH
Confidence 223344 7789999999999999999999999654 3335667778999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh-----ccccH---HHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHH
Q 006812 268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYS-----GLEEH---QKALEQNELSQKVLKTWGLS-SELLRAEIDAA 338 (630)
Q Consensus 268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~---~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la 338 (630)
|+..++++.. .+.. ...........+..++. ..+++ ++|+..++.+++........ +....+.....
T Consensus 169 Al~~l~~~~~-~p~~---~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 169 ALGAIDDANL-TPAE---KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHhCCC-CHHH---HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 9998876553 1110 00000011112222222 22344 67788777766553322222 33344444423
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 006812 339 NMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEIS 418 (630)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 418 (630)
..+...|++++|+..|+++++..+..+.. +...+|.+|...|++++|+.+|++++..... ...........++
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~----~~~~~~~~~~~L~ 317 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW---AQRWVASAYLKLHQPEKAQSILTELFYHPET----IADLSDEELADLF 317 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC----CCCCChHHHHHHH
Confidence 34467799999999999988764322222 3333688999999999999999997753211 1011124556677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCC-----CCCCch---hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 419 MQYESMNEFETAISLLKRTLALLEKLP-----QAQHSE---GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
.++...|++++|+.+++++....+... ....|. ..++..++.++...|++++|+..+++++. ..
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--------~~ 389 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--------NA 389 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hC
Confidence 788999999999999999887532100 011111 34667899999999999999999999988 34
Q ss_pred ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
|.....+..+|.++...|++++|+..+++++. .+|+....+..+|.++...|++++|...++++++..
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEV--------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 66677999999999999999999999999998 446666799999999999999999999999999754
No 17
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.4e-22 Score=182.14 Aligned_cols=385 Identities=15% Similarity=0.147 Sum_probs=287.3
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG 188 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 188 (630)
|..+..-+++|.+++.+. +|.+|+++|+-++...+.. .. ......+.++|..+.+.|+|+.|+..|+..+....
T Consensus 234 ~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsi--nk---~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p 307 (840)
T KOG2003|consen 234 PNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSI--NK---DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP 307 (840)
T ss_pred CCCceeeeeecceeeehh-hHHHHHHHHHHHHhhcccc--ch---hhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc
Confidence 445556678899999998 9999999999999877654 22 23566788999999999999999999998876522
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------------
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE--------------------------------- 235 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------------- 235 (630)
.+. +-++|..|++..|+-++-.+.|.+.+.
T Consensus 308 ----------------n~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 308 ----------------NFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred ----------------cHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 111 112344444444444444444444332
Q ss_pred ------------------HHHHHhccc----------------h-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 236 ------------------IKELILEED----------------S-RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 236 ------------------~~~~~~~~~----------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
+......++ + +.....-.+.+.-+.+.|+++.|++.++- ++
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv----~~ 446 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV----FE 446 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH----HH
Confidence 111111000 0 11112223445667788888888876542 22
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 281 KGLGHNSVEVAHDRRLLGVIYSGLE--EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVV 358 (630)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 358 (630)
+ .++.....+-++|..+++.+| ++..|..+...++.+ +...+.++.+.|.+.+..|++++|.+.|++++
T Consensus 447 ~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 447 K---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred h---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 2 133334445567777766644 678888888877765 55667788899999999999999999999999
Q ss_pred HHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 359 RQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTL 438 (630)
Q Consensus 359 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 438 (630)
. +...-..+++++|..+..+|+.++|+.+|-+.-.+. ...+.++..++.+|..+.+..+|++++.++.
T Consensus 518 ~----ndasc~ealfniglt~e~~~~ldeald~f~klh~il--------~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 518 N----NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--------LNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred c----CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 7 555557799999999999999999999999988777 4567899999999999999999999999887
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH
Q 006812 439 ALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA 518 (630)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 518 (630)
.+. +.+..++..||.+|-+.|+-.+|.+++-.... -.|...++..+||..|....-+++|+.+|+
T Consensus 586 sli-------p~dp~ilskl~dlydqegdksqafq~~ydsyr--------yfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 586 SLI-------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--------YFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred ccC-------CCCHHHHHHHHHHhhcccchhhhhhhhhhccc--------ccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 652 22346889999999999999999999887766 346677788899999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 519 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
++--+ .|........++.|+.+.|+|++|.+.|+..-.
T Consensus 651 kaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 651 KAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99663 466777788899999999999999999988743
No 18
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.93 E-value=1.8e-23 Score=185.47 Aligned_cols=329 Identities=19% Similarity=0.185 Sum_probs=271.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCC
Q 006812 118 IALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGG 197 (630)
Q Consensus 118 ~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 197 (630)
-|.-++..| ++...+.+|+.|++.-.+. -......|..||.+|+.+++|++|+++...-+.+.+.+++..
T Consensus 23 EGERLck~g-dcraGv~ff~aA~qvGTeD------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl--- 92 (639)
T KOG1130|consen 23 EGERLCKMG-DCRAGVDFFKAALQVGTED------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL--- 92 (639)
T ss_pred HHHHHHhcc-chhhhHHHHHHHHHhcchH------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh---
Confidence 456677777 9999999999999876432 124566789999999999999999999998888887776654
Q ss_pred CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC-------------
Q 006812 198 SVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN------------- 264 (630)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------- 264 (630)
.-+.+.-+||..+.-+|.|++|+.+..+-+.+.++. .+......+++++|.+|...|+
T Consensus 93 -------GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f 163 (639)
T KOG1130|consen 93 -------GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAF 163 (639)
T ss_pred -------ccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccc
Confidence 223455589999999999999999999999999987 6667778999999999998764
Q ss_pred -------HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 006812 265 -------FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA 337 (630)
Q Consensus 265 -------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 337 (630)
++.|.++|..-+++.+... +......++.+||..|+-+|+|+.|+.+.+.-+.+.+.+|+....-.++.++
T Consensus 164 ~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNl 241 (639)
T KOG1130|consen 164 NAEVTSALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNL 241 (639)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhccc
Confidence 4566777777777766542 3345567899999999999999999999999999999999998888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812 338 ANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS 415 (630)
Q Consensus 338 a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (630)
|.++.-.|+++.|+++|+..+...... ....+...+.||..|.-..++++|+.|+.+-+.|..... +......++.
T Consensus 242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~Racw 319 (639)
T KOG1130|consen 242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACW 319 (639)
T ss_pred chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHH
Confidence 999999999999999999988765543 344577889999999999999999999999999887654 3345678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh
Q 006812 416 EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470 (630)
Q Consensus 416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 470 (630)
.||..+...|..++|+.+.+..+++..++.+.. .......++...-...|..+.
T Consensus 320 SLgna~~alg~h~kAl~fae~hl~~s~ev~D~s-gelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 320 SLGNAFNALGEHRKALYFAELHLRSSLEVNDTS-GELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc-hhhhhhhhhHHHHHHhCCCcc
Confidence 999999999999999999999999988875432 233455677777777776544
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=5.1e-22 Score=209.56 Aligned_cols=404 Identities=12% Similarity=0.009 Sum_probs=292.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCC
Q 006812 120 LKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSV 199 (630)
Q Consensus 120 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 199 (630)
.+....| ++++|+..+.++.... +..+.++..+|.++...|++++|+..|++++.+
T Consensus 23 ~ia~~~g-~~~~A~~~~~~~~~~~----------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~------------- 78 (765)
T PRK10049 23 QIALWAG-QDAEVITVYNRYRVHM----------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL------------- 78 (765)
T ss_pred HHHHHcC-CHHHHHHHHHHHHhhC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 3445566 9999999998876522 234566888999999999999999999999988
Q ss_pred ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812 200 EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279 (630)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (630)
.|....++..++.++...|++++|+..++++++.. |.... +..+|.++...|++++|+..+++++++.
T Consensus 79 ---~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 79 ---EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22223456689999999999999999999998543 33345 8889999999999999999999999965
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhH-----HHHHHHHHHHHH-----HcCCH--
Q 006812 280 KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSEL-----LRAEIDAANMQI-----ALGKF-- 347 (630)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~la~~~~-----~~g~~-- 347 (630)
+. + ..++..++.++...|..++|+..++++.. .|.. ......+..++. ..+++
T Consensus 147 P~-----~---~~~~~~la~~l~~~~~~e~Al~~l~~~~~-------~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ 211 (765)
T PRK10049 147 PQ-----T---QQYPTEYVQALRNNRLSAPALGAIDDANL-------TPAEKRDLEADAAAELVRLSFMPTRSEKERYAI 211 (765)
T ss_pred CC-----C---HHHHHHHHHHHHHCCChHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence 42 2 34556678899999999999988875443 1111 111112222222 22345
Q ss_pred -HHHHHHHHHHHHHhhhcch---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Q 006812 348 -EEAINTLKGVVRQTEKESE---TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES 423 (630)
Q Consensus 348 -~~A~~~~~~~l~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 423 (630)
++|+..++.+++..+.++. ....+.......+...|++++|+..|+++++... ..|..+..+ +|.+|..
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~-----~~P~~a~~~--la~~yl~ 284 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ-----IIPPWAQRW--VASAYLK 284 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC-----CCCHHHHHH--HHHHHHh
Confidence 7899999999877554432 2233333323344677999999999999765421 113333333 5889999
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCC--chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh---c--CCCCc--cHH
Q 006812 424 MNEFETAISLLKRTLALLEKLPQAQH--SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES---F--GPKHF--GVG 494 (630)
Q Consensus 424 ~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~--~~~~~--~~~ 494 (630)
.|++++|+..|++++.. .+.. ........++.++...|++++|+.+++++....... + ...+| ...
T Consensus 285 ~g~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 285 LHQPEKAQSILTELFYH-----PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred cCCcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 99999999999998763 1111 112456778888899999999999999988742100 0 00122 234
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-----
Q 006812 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH----- 569 (630)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----- 569 (630)
.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|++.+++++++.+..
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 57788999999999999999999999883 46666899999999999999999999999999875331
Q ss_pred ----CCCchhHHHHHHHHHHHHHHHhcCC
Q 006812 570 ----GPSAQDELREARRLLEQLKIKASGA 594 (630)
Q Consensus 570 ----~~~~~~~~~~A~~~~~~~~~~~~~~ 594 (630)
.....+++++|...++++.+.....
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 1124567999999999988764433
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=5.8e-22 Score=195.73 Aligned_cols=311 Identities=12% Similarity=0.025 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH
Q 006812 209 VHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV 288 (630)
Q Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 288 (630)
..+..|..+...|++++|+..|+++++. .|....++..+|.++...|++++|+.++++++.... ....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD----LTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC----CCHH
Confidence 3445788899999999999999999854 244467889999999999999999999998876211 1122
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch-H
Q 006812 289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE-T 367 (630)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~ 367 (630)
.....+..+|.+|...|++++|+.+|+++++. .+....++..++.++...|++++|+..+++++...+.... .
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE 178 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence 34467889999999999999999999987764 4556778889999999999999999999998876544322 2
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
....+..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++++... +
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p 245 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-----P 245 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----h
Confidence 34466788999999999999999999988764 3445677889999999999999999999988741 1
Q ss_pred CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 527 (630)
.....++..++.+|...|++++|...++++++. +|+.. .+..++.++...|++++|+..++++++.
T Consensus 246 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~---- 311 (389)
T PRK11788 246 -EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR---- 311 (389)
T ss_pred -hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh----
Confidence 112345678889999999999999999988873 23322 3478899999999999999999998873
Q ss_pred cCCCCHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHH
Q 006812 528 LGPHHADSIEACQNLSKAYSS--MGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 528 ~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~ 568 (630)
.|+.......++..+.. .|+.++|+..+++.++..-.
T Consensus 312 ----~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 312 ----HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred ----CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 35544333223322212 45777888877777754333
No 21
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.92 E-value=6e-23 Score=182.20 Aligned_cols=329 Identities=17% Similarity=0.148 Sum_probs=273.4
Q ss_pred HhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 006812 162 VMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELIL 241 (630)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (630)
.-|.-+++.|++...+.+|+.|++.-. +....+..+|..||.+|...++|++|+++...-+.+.+.+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGT------------eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l- 88 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGT------------EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL- 88 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcc------------hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh-
Confidence 356778899999999999999998721 1134556789999999999999999999988877777665
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc---------------
Q 006812 242 EEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE--------------- 306 (630)
Q Consensus 242 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------- 306 (630)
.+....+.+..+||.++...|.|++|+.+..+-+.+.+++. +......++++||.+|...|+
T Consensus 89 -gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ 165 (639)
T KOG1130|consen 89 -GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNA 165 (639)
T ss_pred -cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence 55566688889999999999999999999999999998764 445667889999999998764
Q ss_pred -----HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch--HHHHHHHHHHHHH
Q 006812 307 -----HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE--TRALVFISMGKAL 379 (630)
Q Consensus 307 -----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~ 379 (630)
++.|.++|..-+++...+|+......++.++|..|+-+|+|+.|+...+.-+.+.....+ ..-.++.++|.++
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 466788888888999999988888899999999999999999999999988887766432 3356889999999
Q ss_pred HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 006812 380 CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIG 459 (630)
Q Consensus 380 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 459 (630)
.-.|+++.|+++|+..+.+..+.. +....+...+.||..|.-..++++|+.|+.+-+.|..... +......+++.||
T Consensus 246 iflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriGe~RacwSLg 322 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIGELRACWSLG 322 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHH
Confidence 999999999999999998887665 3356778899999999999999999999999999988873 3444567889999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChh
Q 006812 460 WLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQ 511 (630)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 511 (630)
..+...|..++|+.+.++.+++..+.. +......+..++...-...|..+
T Consensus 323 na~~alg~h~kAl~fae~hl~~s~ev~--D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 323 NAFNALGEHRKALYFAELHLRSSLEVN--DTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhC--CcchhhhhhhhhHHHHHHhCCCc
Confidence 999999999999999999999888762 22334455667777777776643
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.6e-20 Score=167.39 Aligned_cols=392 Identities=15% Similarity=0.096 Sum_probs=279.7
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
...++..|.++...| ...+|+..|..++...+ ..-.+|..|+.+.... +.......- .
T Consensus 164 ~fllYL~Gvv~k~~~-~~s~A~~sfv~~v~~~P----------~~W~AWleL~~lit~~-------e~~~~l~~~---l- 221 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELG-LLSLAIDSFVEVVNRYP----------WFWSAWLELSELITDI-------EILSILVVG---L- 221 (559)
T ss_pred hHHHHHHHHHHHhhc-hHHHHHHHHHHHHhcCC----------cchHHHHHHHHhhchH-------HHHHHHHhc---C-
Confidence 456677788888887 88888888887765442 2233444444332111 111110000 0
Q ss_pred hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 006812 192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPF 271 (630)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (630)
+. . .....-+.++.++....+.++++.-++....+ ..|.....-...|.+...+.++++|+..
T Consensus 222 --------~~-~-~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~ 284 (559)
T KOG1155|consen 222 --------PS-D-MHWMKKFFLKKAYQELHQHEEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESV 284 (559)
T ss_pred --------cc-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 00 0 11122234677777777888887776664432 1233345566778999999999999999
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 006812 272 GLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI 351 (630)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 351 (630)
|+...+-.+ -..+...++. ++.+-..+-. .+.++.+ ..... +.-...+..-+|+.|...++.++|+
T Consensus 285 Feei~knDP-----YRl~dmdlyS---N~LYv~~~~s-kLs~LA~--~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv 350 (559)
T KOG1155|consen 285 FEEIRKNDP-----YRLDDMDLYS---NVLYVKNDKS-KLSYLAQ--NVSNI---DKYRPETCCIIANYYSLRSEHEKAV 350 (559)
T ss_pred HHHHHhcCC-----CcchhHHHHh---HHHHHHhhhH-HHHHHHH--HHHHh---ccCCccceeeehhHHHHHHhHHHHH
Confidence 998776322 2223334443 3333222211 1222211 11111 2233456677899999999999999
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 006812 352 NTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAI 431 (630)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 431 (630)
.+|+++++..+ ....+|..+|.-|..+.+...|+..|+.|+++. |..-.+|+.+|+.|..++-+.=|+
T Consensus 351 ~YFkRALkLNp----~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 351 MYFKRALKLNP----KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHHHHhcCc----chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHHHhhhhHHHHHhcchHHHH
Confidence 99999999644 446699999999999999999999999999997 556689999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChh
Q 006812 432 SLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQ 511 (630)
Q Consensus 432 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 511 (630)
-+|++|... . +.+..+|..||.+|.+.++.++|+++|.+++.. +. ....++..||.+|.++++.+
T Consensus 419 yYfqkA~~~-----k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~d---te~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 419 YYFQKALEL-----K--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GD---TEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHHhc-----C--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----cc---cchHHHHHHHHHHHHHHhHH
Confidence 999999985 2 224568999999999999999999999999983 22 24458999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHh
Q 006812 512 SAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKA 591 (630)
Q Consensus 512 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 591 (630)
+|..+|++.++.. ..-|...+++..+...|+.-+.+.+++++|..+..+++.. ....++|..++++++...
T Consensus 484 eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--------~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 484 EAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--------ETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHhc
Confidence 9999999999976 4446677888888899999999999999999998888742 355788999999887664
Q ss_pred c
Q 006812 592 S 592 (630)
Q Consensus 592 ~ 592 (630)
.
T Consensus 555 ~ 555 (559)
T KOG1155|consen 555 A 555 (559)
T ss_pred C
Confidence 4
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-21 Score=176.76 Aligned_cols=384 Identities=15% Similarity=0.113 Sum_probs=280.1
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
..+..+-+.|+-+++.|+|++|+++|.+|+.+. |.-...|.+++-||...|+|++.++...+++
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~----------------p~epiFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC----------------PDEPIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC----------------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 456677889999999999999999999999982 1213567799999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHH------------------HHHHH-----HhhhcCC-CCH--
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGL------------------KALEI-----HKKGLGH-NSV-- 288 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-~~~-- 288 (630)
++ +|..+.+++..+..+...|++++|+.-.. +.|.. ....+.. ..|
T Consensus 177 El--------~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~l 248 (606)
T KOG0547|consen 177 EL--------NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVL 248 (606)
T ss_pred hc--------CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 65 46668999999999999999999886432 21111 1111111 111
Q ss_pred ---HHHHHHHH------------------------HHHHHhc-cccHHHHHHHHHHHHHHHHHcCC------C-hhHHHH
Q 006812 289 ---EVAHDRRL------------------------LGVIYSG-LEEHQKALEQNELSQKVLKTWGL------S-SELLRA 333 (630)
Q Consensus 289 ---~~~~~~~~------------------------la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~------~-~~~~~~ 333 (630)
....+|+. +-.++.. ...|.+|...+.+.......... . ...+.+
T Consensus 249 PS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~a 328 (606)
T KOG0547|consen 249 PSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEA 328 (606)
T ss_pred CcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH
Confidence 11111111 0001110 12455555555554433222110 0 234677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812 334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA 413 (630)
Q Consensus 334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (630)
+...|..++-.|++-.|...++.++...+..+. .|..++.+|...++-++-...|.+|..+. |..+.+
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~----lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--------p~n~dv 396 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS----LYIKRAAAYADENQSEKMWKDFNKAEDLD--------PENPDV 396 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccch----HHHHHHHHHhhhhccHHHHHHHHHHHhcC--------CCCCch
Confidence 788899999999999999999999997665543 58999999999999999999999998876 455689
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812 414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV 493 (630)
Q Consensus 414 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 493 (630)
|+..|++++-.+++++|+.-|++++.+. +..+..+..++.+.+++++++++...|+.+.. ..|..
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~-------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--------kFP~~ 461 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLD-------PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--------KFPNC 461 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcC-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCC
Confidence 9999999999999999999999999872 22345778999999999999999999999998 45777
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHcCC-
Q 006812 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKA-YSSMGSYTLAIEFQQRAIDAWESHGP- 571 (630)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~- 571 (630)
++++...|.++..+++|++|++.|.+|+++-....+. +. .+..+.+-|.+ +.-.+++..|.+++++|+++-++..-
T Consensus 462 ~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A 539 (606)
T KOG0547|consen 462 PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQA 539 (606)
T ss_pred chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHH
Confidence 8899999999999999999999999999975431110 00 11122222222 23458999999999999976544211
Q ss_pred --------CchhHHHHHHHHHHHHHHHh
Q 006812 572 --------SAQDELREARRLLEQLKIKA 591 (630)
Q Consensus 572 --------~~~~~~~~A~~~~~~~~~~~ 591 (630)
-..+++++|+++|++....+
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 16688999999999865443
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=8.4e-21 Score=187.49 Aligned_cols=309 Identities=15% Similarity=0.063 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
...+..|..+...| ++++|+..|+++++.. |....++..+|.++...|++++|+..+++++...
T Consensus 36 ~~~y~~g~~~~~~~-~~~~A~~~~~~al~~~----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----- 99 (389)
T PRK11788 36 SRDYFKGLNFLLNE-QPDKAIDLFIEMLKVD----------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----- 99 (389)
T ss_pred cHHHHHHHHHHhcC-ChHHHHHHHHHHHhcC----------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-----
Confidence 44566788888888 9999999999998764 2345678889999999999999999999887630
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (630)
. .........+..+|.+|...|++++|+..|+++++. .|....++..++.++...|++++|+..+
T Consensus 100 -----~--~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (389)
T PRK11788 100 -----D--LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVA 164 (389)
T ss_pred -----C--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHH
Confidence 0 001223457889999999999999999999998743 3344678899999999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 006812 273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAIN 352 (630)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 352 (630)
+++++..+. .........+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.
T Consensus 165 ~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 165 ERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA------DPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred HHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH------CcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 998875432 112234556778999999999999999999998876 45567788899999999999999999
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 006812 353 TLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAIS 432 (630)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 432 (630)
.+++++...+. ....++..++.+|...|++++|...+++++... |+. ..+..++.++...|++++|+.
T Consensus 236 ~~~~~~~~~p~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~-~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 236 ALERVEEQDPE---YLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGA-DLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HHHHHHHHChh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-hHHHHHHHHHHHhCCHHHHHH
Confidence 99999876332 234577889999999999999999999987763 222 234789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH---cCChhhHHHHHHHHHHH
Q 006812 433 LLKRTLALLEKLPQAQHSEGSVSARIGWLLLL---TGKVPQAIPYLESAAER 481 (630)
Q Consensus 433 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 481 (630)
.++++++. .|+...+..+...+.. .|+.++|+..+++.++.
T Consensus 304 ~l~~~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 304 LLREQLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 99999885 1222233333333332 56899999999988863
No 25
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=1.7e-19 Score=191.60 Aligned_cols=433 Identities=10% Similarity=-0.014 Sum_probs=226.8
Q ss_pred hcHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhh
Q 006812 90 KTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYS 169 (630)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 169 (630)
+...+..+.+..|....--+.....+..+-..+...| ..++|..+++.... + ...+|..+-..+..
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~----------p---d~~Tyn~LL~a~~k 449 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRN----------P---TLSTFNMLMSVCAS 449 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCC----------C---CHHHHHHHHHHHHh
Confidence 3444555555555443321111222222333344444 66666665544211 1 12345555566666
Q ss_pred ccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHH
Q 006812 170 FKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELG 249 (630)
Q Consensus 170 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (630)
.|++++|...|+++.+. ...|. ..+|..+...|.+.|+.++|...|++..+.. -.|+ .
T Consensus 450 ~g~~e~A~~lf~~M~~~--------------Gl~pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~Pd-v 507 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEA--------------GLKAD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEAN-V 507 (1060)
T ss_pred CcCHHHHHHHHHHHHHc--------------CCCCC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCC-H
Confidence 66666666666665543 00111 2345556666666666666666666544210 0111 3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 329 (630)
.+|..+...|.+.|++++|+.+|.++....- .|+ ..+|+.+...|.+.|++++|.+.+.+.... ..+..|+
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv------~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~--~~gi~PD 578 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNV------KPD-RVVFNALISACGQSGAVDRAFDVLAEMKAE--THPIDPD 578 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--cCCCCCc
Confidence 4566666666666666666666666543211 111 344566666666666666666666654432 1122222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
..++..+...|.+.|++++|.++|+.+.+..-.. ...+|..+...|.+.|++++|...|++..... . . |+
T Consensus 579 -~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p---~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---v--~-PD 648 (1060)
T PLN03218 579 -HITVGALMKACANAGQVDRAKEVYQMIHEYNIKG---TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---V--K-PD 648 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C--C-CC
Confidence 3455556666666666666666666655532111 12356666666666666666666666543321 1 1 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK 489 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (630)
..+|..+...|...|++++|.++++++.+. ...++..++..+...|.+.|++++|.++|++.... + -
T Consensus 649 -~~TynsLI~a~~k~G~~eeA~~l~~eM~k~------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g-~ 715 (1060)
T PLN03218 649 -EVFFSALVDVAGHAGDLDKAFEILQDARKQ------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-----K-L 715 (1060)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-C
Confidence 235556666666666666666666665541 22234445666666666666666666666655431 1 1
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW--- 566 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 566 (630)
.| ...+|+.|...|.+.|++++|.++|+++.... ..|+. .+|..+...+.+.|++++|.+++.++++..
T Consensus 716 ~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G------i~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 716 RP-TVSTMNALITALCEGNQLPKALEVLSEMKRLG------LCPNT-ITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 12 23456666666666666666666666654321 12332 255555566666666666666666654310
Q ss_pred ----------------HH------------cCC--CchhHHHHHHHHHHHHHHHhcCCCCCc
Q 006812 567 ----------------ES------------HGP--SAQDELREARRLLEQLKIKASGASINQ 598 (630)
Q Consensus 567 ----------------~~------------~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~ 598 (630)
.+ .+. .......+|..+|++|.+.+..|+...
T Consensus 788 d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 788 NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 00 000 112334679999999999888877543
No 26
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.90 E-value=1.9e-20 Score=197.46 Aligned_cols=423 Identities=11% Similarity=-0.009 Sum_probs=306.4
Q ss_pred hhcHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHh
Q 006812 89 AKTSEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANY 168 (630)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 168 (630)
.+...+....+.++............+..+...+...+ +++.|...+..+.+.. -. | ...++..+...|.
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~g------~~--~-~~~~~n~Li~~y~ 169 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALK-SIRCVKAVYWHVESSG------FE--P-DQYMMNRVLLMHV 169 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhC------CC--c-chHHHHHHHHHHh
Confidence 34455666666666543322223345566666677777 8888888887765432 11 2 2446677888999
Q ss_pred hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccch---
Q 006812 169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDS--- 245 (630)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 245 (630)
+.|++++|...|++... + + ..+|+.+...|.+.|++++|+..|++.++.. ..++.
T Consensus 170 k~g~~~~A~~lf~~m~~-------~-------~-----~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~~~t~ 227 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE-------R-------N-----LASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAEPRTF 227 (697)
T ss_pred cCCCHHHHHHHHhcCCC-------C-------C-----eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCChhhH
Confidence 99999999888876421 1 1 2457778888999999999999998875321 00000
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812 246 ----------------------------RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL 297 (630)
Q Consensus 246 ----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (630)
.....+++.+...|.+.|++++|...|++... ....+|+.+
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~~~vt~n~l 296 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----------KTTVAWNSM 296 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----------CChhHHHHH
Confidence 01123456778889999999999988876421 123568889
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812 298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK 377 (630)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 377 (630)
...|...|++++|+..|++... .|..|+ ..++..+...+...|++++|.+.+..+++..-..+ ..+++.+..
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~----~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d---~~~~~~Li~ 368 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRD----SGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD---IVANTALVD 368 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC---eeehHHHHH
Confidence 9999999999999999986443 344444 45788889999999999999999998887542222 347888999
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 006812 378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSAR 457 (630)
Q Consensus 378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 457 (630)
.|.+.|++++|.+.|++..+ + ...+|+.+...|...|+.++|++.|+++... ...|+..++..
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g~~Pd~~T~~~ 431 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE------GVAPNHVTFLA 431 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCCHHHHHH
Confidence 99999999999999987532 1 2357899999999999999999999998763 33456678889
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 006812 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIE 537 (630)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 537 (630)
+...+.+.|..++|.++|+...+.. + ..| ....|..+..+|.+.|++++|.+.++++ +..|+. .
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~----g-~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~~-~ 495 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENH----R-IKP-RAMHYACMIELLGREGLLDEAYAMIRRA---------PFKPTV-N 495 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhc----C-CCC-CccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCCH-H
Confidence 9999999999999999999877521 1 122 2346888999999999999999988653 123333 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC---------CCchhHHHHHHHHHHHHHHHhcCCC
Q 006812 538 ACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG---------PSAQDELREARRLLEQLKIKASGAS 595 (630)
Q Consensus 538 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~A~~~~~~~~~~~~~~~ 595 (630)
+|..|...+...|+.+.|...+++.+++..... -...|++++|.++++.+.+++....
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 789999999999999999999888765432211 0155889999999999999877543
No 27
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=2.6e-19 Score=190.15 Aligned_cols=406 Identities=11% Similarity=0.024 Sum_probs=307.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhc
Q 006812 114 VGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEE 193 (630)
Q Consensus 114 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 193 (630)
.+..+-..+...| ++++|+..|++.... +... .....+..+...+...|..++|..+++.... .
T Consensus 372 ~~~~~y~~l~r~G-~l~eAl~Lfd~M~~~-------gvv~-~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------p 435 (1060)
T PLN03218 372 EYIDAYNRLLRDG-RIKDCIDLLEDMEKR-------GLLD-MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------P 435 (1060)
T ss_pred HHHHHHHHHHHCc-CHHHHHHHHHHHHhC-------CCCC-chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------C
Confidence 3344444455667 999999999875432 1111 1233344556777888999999888754321 1
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006812 194 GLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGL 273 (630)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (630)
+ ..+|..+-..+...|++++|...|.++.+.. -.| ...++..+...|.+.|++++|..+|+
T Consensus 436 -------d-----~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~p-D~~tynsLI~~y~k~G~vd~A~~vf~ 496 (1060)
T PLN03218 436 -------T-----LSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKA-DCKLYTTLISTCAKSGKVDAMFEVFH 496 (1060)
T ss_pred -------C-----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 1 2567778888999999999999998866321 112 24678899999999999999999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 006812 274 KALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINT 353 (630)
Q Consensus 274 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 353 (630)
++.+.. ......+|+.+...|.+.|++++|+..|.+... .+..|+ ..++..+...|.+.|++++|.++
T Consensus 497 eM~~~G-------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 497 EMVNAG-------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred HHHHcC-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 887531 111246788899999999999999999876443 354454 66889999999999999999999
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 006812 354 LKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISL 433 (630)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 433 (630)
+.++........++ ..+|..+...|.+.|++++|.+.|+...+.. . +....+|+.+...|.+.|++++|..+
T Consensus 565 f~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g---i----~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 565 LAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN---I----KGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---C----CCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 99987642211222 4578889999999999999999999865431 1 12346889999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHH
Q 006812 434 LKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSA 513 (630)
Q Consensus 434 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 513 (630)
|.++... .-.|+..++..+...|.+.|++++|.++++++.+. .......++..+...|.+.|++++|
T Consensus 637 f~eM~~~------Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 637 YDDMKKK------GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHHHHHc------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 9998762 23456678899999999999999999999998762 2333456899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC------------chhHHHHHH
Q 006812 514 AQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS------------AQDELREAR 581 (630)
Q Consensus 514 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~A~ 581 (630)
...|+++.... ..|+. .+|..|...|.+.|++++|.++|+++... ...|+ ..+.+++|.
T Consensus 704 ~~lf~eM~~~g------~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~--Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 704 LELYEDIKSIK------LRPTV-STMNALITALCEGNQLPKALEVLSEMKRL--GLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred HHHHHHHHHcC------CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999876531 23443 57999999999999999999999998642 12222 457889999
Q ss_pred HHHHHHHHHhcCCCC
Q 006812 582 RLLEQLKIKASGASI 596 (630)
Q Consensus 582 ~~~~~~~~~~~~~~~ 596 (630)
.+++++.+.+..++.
T Consensus 775 ~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 775 DLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHcCCCCCH
Confidence 999999988877764
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=6.8e-21 Score=171.44 Aligned_cols=385 Identities=15% Similarity=0.145 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
.++++++..|.... -+.+|+..|+-.++-- --|.....-.++|.+|++..+|.+|+.+|+.++.....+..
T Consensus 202 svl~nlaqqy~~nd-m~~ealntyeiivknk--------mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink 272 (840)
T KOG2003|consen 202 SVLFNLAQQYEAND-MTAEALNTYEIIVKNK--------MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINK 272 (840)
T ss_pred HHHHHHHHHhhhhH-HHHHHhhhhhhhhccc--------ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccch
Confidence 56788888877776 7888888887654321 11222333467999999999999999999999987554432
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (630)
+ ....++.++|..+.+.|+|+.|+..|+.+++..+ .. .+-.+|-.+++..|+-++-.+.|
T Consensus 273 ~-----------~rikil~nigvtfiq~gqy~dainsfdh~m~~~p--------n~-~a~~nl~i~~f~i~d~ekmkeaf 332 (840)
T KOG2003|consen 273 D-----------MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP--------NF-IAALNLIICAFAIGDAEKMKEAF 332 (840)
T ss_pred h-----------hHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc--------cH-HhhhhhhhhheecCcHHHHHHHH
Confidence 2 3346788999999999999999999999886543 32 34556788999999999999999
Q ss_pred HHHHHHHhhhc------CCCCHHH---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-------------------Hc
Q 006812 273 LKALEIHKKGL------GHNSVEV---AHDRRLLGVIYSGLEEHQKALEQNELSQKVLK-------------------TW 324 (630)
Q Consensus 273 ~~al~~~~~~~------~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-------------------~~ 324 (630)
++.+.+-.... ..+.|.. ..+..+=-.-.+...+-..|.++...+.++.. ..
T Consensus 333 ~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s 412 (840)
T KOG2003|consen 333 QKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKAS 412 (840)
T ss_pred HHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHh
Confidence 99987533211 1122211 11111101111112222333444333333321 11
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHhh
Q 006812 325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ--EKFADAKRCLEIACGILDKK 402 (630)
Q Consensus 325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~ 402 (630)
...+.....-.+.+..+.+.|+++.|++.++-.-+. +......+-.+|..+++.+ .++.+|..+.+.++.+.+
T Consensus 413 ~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-- 487 (840)
T KOG2003|consen 413 QHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-- 487 (840)
T ss_pred hhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--
Confidence 111222333445677788999999998887653332 2222233445555555543 356667777776665542
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812 403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERL 482 (630)
Q Consensus 403 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 482 (630)
..+.++.+.|.+-+..|++++|.+.|++++. .+..-+.+++++|..+..+|+.++|+++|-+...+.
T Consensus 488 ------yn~~a~~nkgn~~f~ngd~dka~~~ykeal~-------ndasc~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 488 ------YNAAALTNKGNIAFANGDLDKAAEFYKEALN-------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred ------cCHHHhhcCCceeeecCcHHHHHHHHHHHHc-------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 2345566666666677777777777777665 122234566777777777777777777776665554
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006812 483 KESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQ 560 (630)
Q Consensus 483 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 560 (630)
...+.++..++.+|..+.+..+|++++-++..+. |....++..||.+|.+.|+..+|.+++-
T Consensus 555 --------~nn~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 555 --------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred --------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 2234566667777777777777777766665532 2222455566666666666665555543
No 29
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.89 E-value=2.3e-19 Score=189.19 Aligned_cols=394 Identities=13% Similarity=0.030 Sum_probs=291.3
Q ss_pred HHHHHhhccccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHH
Q 006812 96 LQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSD 175 (630)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 175 (630)
...+..+....-.|+ ...+..+...|...| ++++|..+|++..+ + ...+|+.+...|.+.|++++
T Consensus 143 ~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~-------~------~~~t~n~li~~~~~~g~~~~ 207 (697)
T PLN03081 143 KAVYWHVESSGFEPD-QYMMNRVLLMHVKCG-MLIDARRLFDEMPE-------R------NLASWGTIIGGLVDAGNYRE 207 (697)
T ss_pred HHHHHHHHHhCCCcc-hHHHHHHHHHHhcCC-CHHHHHHHHhcCCC-------C------CeeeHHHHHHHHHHCcCHHH
Confidence 344444444444443 456677778888888 99999998887421 1 23467888999999999999
Q ss_pred HHHHHHHHHHHHhHhhhcC--------CCCCC-------------ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 176 SLGYLSKANRMLGRLEEEG--------LGGSV-------------EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 176 A~~~~~~al~~~~~~~~~~--------~~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
|+..|++....-....... ..... .... ....+++.+...|.+.|++++|...|++..
T Consensus 208 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC-ccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 9999998864310000000 00000 0000 011345678889999999999999988642
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (630)
. ....+|+.+...|...|++++|+.+|+++....- .| ...++..+...+...|++++|.+.+
T Consensus 287 --------~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~------~p-d~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 287 --------E---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV------SI-DQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred --------C---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------CC-CHHHHHHHHHHHHhccchHHHHHHH
Confidence 1 1246799999999999999999999998765211 11 2356888999999999999999998
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812 315 ELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 394 (630)
....+. |. +....++..+...|.+.|++++|...|++..+ ++ ..+|+.+...|.+.|+.++|.+.|++
T Consensus 349 ~~m~~~----g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d----~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 349 AGLIRT----GF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KN----LISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred HHHHHh----CC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CC----eeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 876653 33 33466788999999999999999999998643 11 34899999999999999999999998
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHH
Q 006812 395 ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPY 474 (630)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 474 (630)
..... .. |+ ..++..+...+...|..++|.++|+.+.+. ....|....|..+..+|.+.|++++|.+.
T Consensus 417 M~~~g---~~---Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~-----~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 417 MIAEG---VA---PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN-----HRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred HHHhC---CC---CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-----cCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 66431 11 22 356888888999999999999999988653 12335556889999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 006812 475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL 554 (630)
Q Consensus 475 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 554 (630)
+++. +..|. ..+|..+...+...|+++.|...+++.+.+ .|+....|..|+.+|...|++++
T Consensus 485 ~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 485 IRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHH
Confidence 7643 12233 447889999999999999999999887652 34444678899999999999999
Q ss_pred HHHHHHHHHHH
Q 006812 555 AIEFQQRAIDA 565 (630)
Q Consensus 555 A~~~~~~al~~ 565 (630)
|.+++++..+.
T Consensus 547 A~~v~~~m~~~ 557 (697)
T PLN03081 547 AAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHc
Confidence 99999988754
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.9e-21 Score=181.41 Aligned_cols=304 Identities=16% Similarity=0.148 Sum_probs=236.4
Q ss_pred hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812 205 IMHAVHLELANVKTAMG--RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (630)
.+...+..+|..|.... +..+|+..|.+ + ...++....++..+|..|+.+++|++|..+|+.+-++.+-.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r 386 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR 386 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455666666666544 34677777766 2 23445667889999999999999999999999987765421
Q ss_pred cCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812 283 LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE 362 (630)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 362 (630)
. +-..+| ..+.+.+.+- -++.++-+ .+. ..++..+.+|..+|.+|.-+++++.|++.|++++.+.
T Consensus 387 v-----~~meiy---ST~LWHLq~~-v~Ls~Laq--~Li---~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld- 451 (638)
T KOG1126|consen 387 V-----KGMEIY---STTLWHLQDE-VALSYLAQ--DLI---DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD- 451 (638)
T ss_pred c-----cchhHH---HHHHHHHHhh-HHHHHHHH--HHH---hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-
Confidence 1 111222 2222222211 12222211 222 2257778899999999999999999999999999854
Q ss_pred hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 363 KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE 442 (630)
Q Consensus 363 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 442 (630)
+..+.+|..+|.-+.....+|.|..+|+.|+.+. +..-.+|+.+|.+|.++++++.|+-+|++|+++
T Consensus 452 ---p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-- 518 (638)
T KOG1126|consen 452 ---PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD--------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-- 518 (638)
T ss_pred ---CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--
Confidence 4446689999999999999999999999999876 567799999999999999999999999999986
Q ss_pred hCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 443 KLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
. +....+...+|.++.+.|+.++|+.+|++|+.+ +|......+..|.++...+++++|+..+++..+
T Consensus 519 ---N--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 519 ---N--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred ---C--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 2 223457789999999999999999999999983 345555778999999999999999999999877
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 523 IMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
+ -|+...+++.+|.+|.+.|+.+.|+..|--|.++
T Consensus 586 ~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 586 L--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred h--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4 4777889999999999999999999999888764
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.1e-19 Score=191.72 Aligned_cols=340 Identities=15% Similarity=0.055 Sum_probs=259.3
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCC---HHHHHHH--
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR---REEALEH-- 229 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~-- 229 (630)
.....+..++......|++++|...++++...-. +... ...+...++.+|...+. ..+++..
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG------------DARL-SQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc------------cccc-CHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 3456677889999999999999999999877410 0000 01222356666666655 3333222
Q ss_pred --------------------HHHHHHHHHHHhccchHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 230 --------------------LQKCLEIKELILEEDSRE--LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 230 --------------------~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
+..+.. .+ +..|. ...++.++|.++.. +++.+|+..+.+++...+. .
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~----al-~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-----~ 509 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVR----LL-GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-----A 509 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHH----hc-ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-----h
Confidence 222221 11 23344 67889999999987 8999999999998876432 1
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET 367 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 367 (630)
.....+|.++...|++++|+..++++... .+. ...+..+|.++...|++++|+.++++++...+..
T Consensus 510 ----~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~--- 575 (987)
T PRK09782 510 ----WQHRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD--- 575 (987)
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc---
Confidence 22555677778999999999999875432 222 2346788999999999999999999999864333
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
...+..++......|++++|+..+++++++. |. ...+.++|.++...|++++|+..|++++.+ .+
T Consensus 576 -~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~P 640 (987)
T PRK09782 576 -NALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EP 640 (987)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CC
Confidence 2344455666667799999999999998775 34 578899999999999999999999999986 32
Q ss_pred CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 527 (630)
. ...++.++|.++...|++++|+..|+++++ .+|....++.++|.++...|++++|+.+|+++++
T Consensus 641 d--~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~----- 705 (987)
T PRK09782 641 N--NSNYQAALGYALWDSGDIAQSREMLERAHK--------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID----- 705 (987)
T ss_pred C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----
Confidence 2 345889999999999999999999999998 3467778999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 528 LGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 528 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
..|+.+.+....|.+.....+++.|.+.+.++..+
T Consensus 706 ---l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 706 ---DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred ---cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 45777788889999999999999999999888754
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=3.6e-19 Score=187.75 Aligned_cols=328 Identities=13% Similarity=0.034 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC---HHHH---------------
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN---FKEA--------------- 268 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A--------------- 268 (630)
...+..++......|++++|...|+++...... ..........++.+|...+. ..++
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD-----ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW 450 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc-----cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence 456778899999999999999999998853111 10112334467777776655 3333
Q ss_pred -------HHHHHHHHHHHhhhcCCCCHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812 269 -------LPFGLKALEIHKKGLGHNSVE--VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN 339 (630)
Q Consensus 269 -------~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 339 (630)
...+........ ..|. ...++.++|.++.. +++.+|+..+.+++.. .|+. .....+|.
T Consensus 451 ~~~~~~~~~~~~~~~~al~-----~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~------~Pd~-~~~L~lA~ 517 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLG-----DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR------QPDA-WQHRAVAY 517 (987)
T ss_pred HhhhhhhhhhHHHHHHhcc-----cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh------CCch-HHHHHHHH
Confidence 222333322222 2233 56788999999987 8999999999888765 2332 23666788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 006812 340 MQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISM 419 (630)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 419 (630)
++...|++++|+..+++++...+. . ..+..+|.++...|++++|..++++++... |.....+..++.
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~p~-~----~a~~~la~all~~Gd~~eA~~~l~qAL~l~--------P~~~~l~~~La~ 584 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHDMS-N----EDLLAAANTAQAAGNGAARDRWLQQAEQRG--------LGDNALYWWLHA 584 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCC-c----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CccHHHHHHHHH
Confidence 888999999999999997654222 1 246788999999999999999999998753 233344555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812 420 QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN 499 (630)
Q Consensus 420 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 499 (630)
.....|++++|+..+++++++ .+ ....+.++|.++.+.|++++|+..|++++. ..|....++.+
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l-----~P---~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--------l~Pd~~~a~~n 648 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNI-----AP---SANAYVARATIYRQRHNVPAAVSDLRAALE--------LEPNNSNYQAA 648 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHh-----CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHH
Confidence 666779999999999999986 22 245889999999999999999999999998 35677789999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC--CchhHH
Q 006812 500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP--SAQDEL 577 (630)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~ 577 (630)
+|.++...|++++|+..|+++++ .+|+...++.++|.++...|++++|+.+|++++++.+.... ...+.+
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~--------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHK--------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 99999999999999999999999 44666789999999999999999999999999987665322 234555
Q ss_pred HHHHHHHHHHHH
Q 006812 578 REARRLLEQLKI 589 (630)
Q Consensus 578 ~~A~~~~~~~~~ 589 (630)
..+...|+...+
T Consensus 721 ~~~~~~~~~a~~ 732 (987)
T PRK09782 721 NQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.6e-21 Score=181.56 Aligned_cols=303 Identities=15% Similarity=0.130 Sum_probs=234.7
Q ss_pred HHHHHHHhhHHHhhcc--ChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFK--RFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (630)
....+..+|..|.... +..+|+..|++ +-. .......++.++|..|+.+++|++|..+|+.+
T Consensus 316 l~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp~---------------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~ 379 (638)
T KOG1126|consen 316 LMELLRGLGEGYRSLSQYNCREALNLFEK-LPS---------------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLV 379 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHH---------------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666665443 34566666655 211 12333467889999999999999999999987
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHH
Q 006812 234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQ 313 (630)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (630)
-++.+-. ....-....+++...+--+---+.+..++ ..+....+|..+|++|.-+++++.|+++
T Consensus 380 r~~~p~r--------v~~meiyST~LWHLq~~v~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~ 443 (638)
T KOG1126|consen 380 RRIEPYR--------VKGMEIYSTTLWHLQDEVALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKC 443 (638)
T ss_pred Hhhcccc--------ccchhHHHHHHHHHHhhHHHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHH
Confidence 6544322 22222223333333332221122222222 2333446677889999999999999999
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 006812 314 NELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLE 393 (630)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 393 (630)
|++|+++ +|....+|..+|.-+....++|.|...|+.++...+++ -.+|+.+|.+|.++++++.|+-+|+
T Consensus 444 f~RAiQl------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh----YnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 444 FKRAIQL------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH----YNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred HHHhhcc------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh----hHHHHhhhhheeccchhhHHHHHHH
Confidence 9999998 88899999999999999999999999999999965554 5599999999999999999999999
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHH
Q 006812 394 IACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIP 473 (630)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (630)
+|+++. |........+|.++...|+.++|+.+|++|+.+ ++. +....+..|.+++..+++++|+.
T Consensus 514 kA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~k--n~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 514 KAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPK--NPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred hhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCC--CchhHHHHHHHHHhhcchHHHHH
Confidence 999986 566678888999999999999999999999986 322 23466889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 474 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
.+++..++ .|+.+.++..+|.+|.+.|+.+.|+..|--|.++
T Consensus 579 ~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 579 ELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 99988774 4778889999999999999999999999988874
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-18 Score=160.63 Aligned_cols=386 Identities=18% Similarity=0.163 Sum_probs=249.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCC
Q 006812 116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGL 195 (630)
Q Consensus 116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 195 (630)
-..|...+..| ||+.|+.+|.+++.+.+. ....|.+...+|..+|+|++|++.-.+.+++
T Consensus 6 k~kgnaa~s~~-d~~~ai~~~t~ai~l~p~----------nhvlySnrsaa~a~~~~~~~al~da~k~~~l--------- 65 (539)
T KOG0548|consen 6 KEKGNAAFSSG-DFETAIRLFTEAIMLSPT----------NHVLYSNRSAAYASLGSYEKALKDATKTRRL--------- 65 (539)
T ss_pred HHHHHhhcccc-cHHHHHHHHHHHHccCCC----------ccchhcchHHHHHHHhhHHHHHHHHHHHHhc---------
Confidence 34667777887 999999999999987632 3446678889999999999999999998888
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc------------
Q 006812 196 GGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL------------ 263 (630)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g------------ 263 (630)
.|.++..|..+|..+.-.|+|++|+..|.+.|+.. |.....+.+++.++....
T Consensus 66 -------~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d--------~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~ 130 (539)
T KOG0548|consen 66 -------NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD--------PSNKQLKTGLAQAYLEDYAADQLFTKPYFH 130 (539)
T ss_pred -------CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC--------CchHHHHHhHHHhhhHHHHhhhhccCcHHH
Confidence 66778899999999999999999999999999643 333444555555541110
Q ss_pred ---------CHHHHHHHHHHHHHHHhhhc---------------------------------------CC----------
Q 006812 264 ---------NFKEALPFGLKALEIHKKGL---------------------------------------GH---------- 285 (630)
Q Consensus 264 ---------~~~~A~~~~~~al~~~~~~~---------------------------------------~~---------- 285 (630)
++-.....|...++..++.. .+
T Consensus 131 ~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (539)
T KOG0548|consen 131 EKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPI 210 (539)
T ss_pred HHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCc
Confidence 00011111222222211100 00
Q ss_pred --CCH------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 286 --NSV------EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGV 357 (630)
Q Consensus 286 --~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 357 (630)
+.. ..+.....+|...+...++..|+++|..++.+ . ..+..+.+.+.+|+..|.+.+.+.....+
T Consensus 211 ~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a 283 (539)
T KOG0548|consen 211 IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL------A-TDITYLNNIAAVYLERGKYAECIELCEKA 283 (539)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH------h-hhhHHHHHHHHHHHhccHHHHhhcchHHH
Confidence 000 12233445566666666666666666666655 2 33444455566666666666666665555
Q ss_pred HHHhhhc---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812 358 VRQTEKE---SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL 434 (630)
Q Consensus 358 l~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 434 (630)
++..... ...++.++..+|..|...++++.|+.+|.+++.-.+. ..+.......++++...
T Consensus 284 ~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----------------~~~ls~lk~~Ek~~k~~ 347 (539)
T KOG0548|consen 284 VEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----------------PDLLSKLKEAEKALKEA 347 (539)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----------------HHHHHHHHHHHHHHHHH
Confidence 5443321 1223444444555666666666666666665443311 11122222333333332
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHH
Q 006812 435 KRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAA 514 (630)
Q Consensus 435 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 514 (630)
+...-+ ++. ...-...-|..++..|+|..|+..|.+++. ..|+.+..|.+.|.||..+|.+..|+
T Consensus 348 e~~a~~-----~pe--~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 348 ERKAYI-----NPE--KAEEEREKGNEAFKKGDYPEAVKHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred HHHHhh-----Chh--HHHHHHHHHHHHHhccCHHHHHHHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHH
Confidence 222111 111 122334558999999999999999999988 45888999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812 515 QVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK 590 (630)
Q Consensus 515 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~ 590 (630)
...+.+++ .+|.....|..-|.++..+.+|++|.+.|+++++.- ..-.+++..+.+....
T Consensus 413 ~Da~~~ie--------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 413 KDAKKCIE--------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHh--------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHH
Confidence 99999998 478888999999999999999999999999998753 2334455555554444
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.4e-19 Score=163.19 Aligned_cols=397 Identities=16% Similarity=0.157 Sum_probs=279.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh------
Q 006812 115 GLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG------ 188 (630)
Q Consensus 115 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------ 188 (630)
-+.+|++++..+ +++.|......- .+. .....|.+..+.++....+|++|...+.++-....
T Consensus 52 ~~~~aq~l~~~~-~y~ra~~lit~~-~le----------~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~ 119 (611)
T KOG1173|consen 52 IYWLAQVLYLGR-QYERAAHLITTY-KLE----------KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYE 119 (611)
T ss_pred HHHHHHHHHhhh-HHHHHHHHHHHh-hhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcc
Confidence 356888888888 888887766542 111 12345777899999999999999998874411100
Q ss_pred HhhhcCCCCCCcc---chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc-----------------------
Q 006812 189 RLEEEGLGGSVED---IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE----------------------- 242 (630)
Q Consensus 189 ~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------- 242 (630)
+.....+..+... ........++..|.+|....+.++|...|.+|+-.......
T Consensus 120 ~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l 199 (611)
T KOG1173|consen 120 KDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESL 199 (611)
T ss_pred hhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcc
Confidence 0000000111000 11223456677899999999999999999887643211000
Q ss_pred ------cch--------------------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC
Q 006812 243 ------EDS--------------------------------RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG 284 (630)
Q Consensus 243 ------~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (630)
..+ ....+.+...+..++..++|.+..+..+..++..+
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp---- 275 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP---- 275 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC----
Confidence 000 01122333344555556666666666665555433
Q ss_pred CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812 285 HNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE 364 (630)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 364 (630)
-++. ..-..+| ++...|+.. +.|.-+.++.+. .|..+.+|+.+|..|...|++.+|..+|.++..+.+.-
T Consensus 276 -fh~~--~~~~~ia-~l~el~~~n---~Lf~lsh~LV~~---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f 345 (611)
T KOG1173|consen 276 -FHLP--CLPLHIA-CLYELGKSN---KLFLLSHKLVDL---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF 345 (611)
T ss_pred -CCcc--hHHHHHH-HHHHhcccc---hHHHHHHHHHHh---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc
Confidence 1222 2222345 444555443 334333344332 46778889999999999999999999999998865544
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812 365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL 444 (630)
Q Consensus 365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 444 (630)
+.+|...|..+...|..++|+.+|..|-+++.... .-...+|.-|...++++-|..+|.+|+.+.+.
T Consensus 346 ----gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h--------lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~- 412 (611)
T KOG1173|consen 346 ----GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH--------LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS- 412 (611)
T ss_pred ----cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc--------chHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-
Confidence 44999999999999999999999999999885433 33455888899999999999999999997432
Q ss_pred CCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 445 PQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
+..++..+|.+.+..+.|.+|..+|+.++...+.... ..+....++.+||.++.+++.+++|+.+|++++.+
T Consensus 413 ------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l- 484 (611)
T KOG1173|consen 413 ------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL- 484 (611)
T ss_pred ------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-
Confidence 2357899999999999999999999999976666533 33456668999999999999999999999999994
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 525 DVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 525 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
.|..+.++..+|.+|..+|+++.|+++|.+++.+
T Consensus 485 -------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 485 -------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred -------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 4666689999999999999999999999999965
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.9e-18 Score=156.38 Aligned_cols=308 Identities=15% Similarity=0.099 Sum_probs=240.5
Q ss_pred HHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 158 MCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK 237 (630)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 237 (630)
..-+.++.++....+.++++.-++....+ + .+....+-...|.+...+.++++|+..|+....
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~-------g--------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k-- 290 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSV-------G--------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK-- 290 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--
Confidence 33455778888888888888777665544 0 122223445688999999999999999998763
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 006812 238 ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELS 317 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (630)
++|....-+....++++-.++-.+---+.+.+..+.+ -...+...+|+.|.-.++.++|+.+|++|
T Consensus 291 ------nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK--------yR~ETCCiIaNYYSlr~eHEKAv~YFkRA 356 (559)
T KOG1155|consen 291 ------NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK--------YRPETCCIIANYYSLRSEHEKAVMYFKRA 356 (559)
T ss_pred ------cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc--------CCccceeeehhHHHHHHhHHHHHHHHHHH
Confidence 3343333333334444444332222222333333322 12244556799999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812 318 QKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397 (630)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 397 (630)
+++ +|....++..+|.-|..+.+...|++.|+.++++.+.+. .+|+.+|+.|..++...=|+-+|++|..
T Consensus 357 LkL------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy----RAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 357 LKL------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY----RAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred Hhc------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH----HHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 998 889999999999999999999999999999999877664 4999999999999999999999999988
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812 398 ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES 477 (630)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (630)
.. |.....|..||.+|.+.++.++|+++|.+++.. + .....++..||.+|.+.++.++|..+|++
T Consensus 427 ~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~--dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 427 LK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----G--DTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred cC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----c--ccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 75 556689999999999999999999999999985 2 12346899999999999999999999999
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 478 AAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 478 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
.++.. ...|...+.+..+...|+.-+.+.+++++|..+..+++.
T Consensus 492 ~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 492 YVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99966 334556777888888899999999999999998887766
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=4e-18 Score=167.06 Aligned_cols=391 Identities=12% Similarity=0.048 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
...++..+...+..| ++++|...+.++++..+ ....+|..||.+|..+|+.+++...+-.|-.+
T Consensus 139 l~~ll~eAN~lfarg-~~eeA~~i~~EvIkqdp----------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----- 202 (895)
T KOG2076|consen 139 LRQLLGEANNLFARG-DLEEAEEILMEVIKQDP----------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----- 202 (895)
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCc----------cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----
Confidence 456778888889998 99999999999988763 34668899999999999999999998777666
Q ss_pred hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 006812 192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPF 271 (630)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (630)
+ |.....|..++.....+|++.+|.-+|.+|++.. |.........+.+|.+.|+...|...
T Consensus 203 ----~-------p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 203 ----N-------PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMET 263 (895)
T ss_pred ----C-------CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHH
Confidence 1 2223567789999999999999999999999654 33367788899999999999999999
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 006812 272 GLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI 351 (630)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 351 (630)
|.+++...+.. +.......-...+..+...++-+.|++.++.++.. +.+......+..++.++.....++.|.
T Consensus 264 f~~l~~~~p~~---d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~----~~~~~~~ed~ni~ael~l~~~q~d~~~ 336 (895)
T KOG2076|consen 264 FLQLLQLDPPV---DIERIEDLIRRVAHYFITHNERERAAKALEGALSK----EKDEASLEDLNILAELFLKNKQSDKAL 336 (895)
T ss_pred HHHHHhhCCch---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh----ccccccccHHHHHHHHHHHhHHHHHhh
Confidence 99999876521 22233334445678888888889999999988773 222233344557888999999999998
Q ss_pred HHHHHHHHHh----------------------hh---cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 352 NTLKGVVRQT----------------------EK---ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 352 ~~~~~~l~~~----------------------~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
.......... +. .......+...++.+..+.++..+++..+..--. ..
T Consensus 337 ~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-------~~ 409 (895)
T KOG2076|consen 337 MKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-------VW 409 (895)
T ss_pred HHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-------CC
Confidence 8877655410 00 0111111345555556666666666554432111 12
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF 486 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (630)
..+....+..++.++...|++.+|+.++..... .+....+.+|..+|.+|..+|.+++|+++|++++.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~------~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~------ 477 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITN------REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI------ 477 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc------CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh------
Confidence 346678899999999999999999999998766 23333467899999999999999999999999998
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD-VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
..|....+...|+.++..+|+.++|.+.++....--. ..-+...+....+......++...|+.++=+..-...+..
T Consensus 478 --~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 478 --LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred --cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3466777889999999999999999998887441000 0000112333467788899999999999855555555443
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=3.5e-17 Score=169.26 Aligned_cols=418 Identities=11% Similarity=-0.034 Sum_probs=281.1
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
.|......+..+.+.++.| +++.|+..|+++++..+.. . +.. ..+..++...|+.++|+.++++++.-
T Consensus 30 ~p~~~~~~y~~aii~~r~G-d~~~Al~~L~qaL~~~P~~-----~-~av----~dll~l~~~~G~~~~A~~~~eka~~p- 97 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAG-DTAPVLDYLQEESKAGPLQ-----S-GQV----DDWLQIAGWAGRDQEVIDVYERYQSS- 97 (822)
T ss_pred CccchhHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCccc-----h-hhH----HHHHHHHHHcCCcHHHHHHHHHhccC-
Confidence 3556667778888888888 9999999999988776332 0 111 15667777779999999999988721
Q ss_pred hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812 188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE 267 (630)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (630)
.+.....+..+|.++..+|++++|++.|+++++.. |....++..++.+|...++.++
T Consensus 98 ---------------~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------P~n~~~l~gLa~~y~~~~q~~e 154 (822)
T PRK14574 98 ---------------MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------PTNPDLISGMIMTQADAGRGGV 154 (822)
T ss_pred ---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHhhcCCHHH
Confidence 11112344456889999999999999999988543 2224556677899999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH
Q 006812 268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKF 347 (630)
Q Consensus 268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 347 (630)
|+..++++....+. . ..+..++.++...++..+|+..++++++. .|.....+..+..+....|-.
T Consensus 155 Al~~l~~l~~~dp~--------~-~~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 155 VLKQATELAERDPT--------V-QNYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred HHHHHHHhcccCcc--------h-HHHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCc
Confidence 99998888765332 1 11234455665577776788888887765 344444444444444444433
Q ss_pred HHHH------------------------------------------------HHHHHHHHHhhhcc---hHHHHHHHHHH
Q 006812 348 EEAI------------------------------------------------NTLKGVVRQTEKES---ETRALVFISMG 376 (630)
Q Consensus 348 ~~A~------------------------------------------------~~~~~~l~~~~~~~---~~~~~~~~~la 376 (630)
..|. ..++..+...+..+ +....+....-
T Consensus 220 ~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl 299 (822)
T PRK14574 220 EPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRL 299 (822)
T ss_pred HHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 3333 33333333222222 22233444555
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHH
Q 006812 377 KALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSA 456 (630)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 456 (630)
.++...|++.+++..|+....... .-|. .+....|..|...++.++|+.+|++++.-.... ...........
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~-----~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~-~~~~~~~~~~~ 371 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGY-----KMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKT-FRNSDDLLDAD 371 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCC-----CCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc-cCCCcchHHHH
Confidence 667778888888888876432211 1133 355668999999999999999999987632111 01112233346
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHH---hcC----CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812 457 RIGWLLLLTGKVPQAIPYLESAAERLKE---SFG----PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG 529 (630)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 529 (630)
.|-..|...+++++|..++++..+...- .++ ..+|+.......++.++...|++.+|.+.+++.+.
T Consensus 372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~------- 444 (822)
T PRK14574 372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS------- 444 (822)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Confidence 7888999999999999999998762210 011 24677788888999999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------CchhHHHHHHHHHHHHHHHh
Q 006812 530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP---------SAQDELREARRLLEQLKIKA 591 (630)
Q Consensus 530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~A~~~~~~~~~~~ 591 (630)
..|....+...+|.++...|.+.+|...++.+..+.+.... ...+++++|..+.+.+.+..
T Consensus 445 -~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 445 -TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred -hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 44666688899999999999999999999887755322111 14567777777776665443
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=6.9e-18 Score=165.39 Aligned_cols=349 Identities=13% Similarity=0.083 Sum_probs=260.4
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
...+...|+..+..|++++|...+.+++.. .|.....|+.||.+|..+|+.+++....-.|-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ----------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 455667888888899999999999999998 4555678999999999999999999887766532
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 006812 237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (630)
. +.+ ...|..++....++|++.+|.-+|.+|+...+ .........+.+|.+.|+...|...|.+
T Consensus 203 ~-----p~d---~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p--------~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 203 N-----PKD---YELWKRLADLSEQLGNINQARYCYSRAIQANP--------SNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred C-----CCC---hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 2 333 36788999999999999999999999998643 2355667889999999999999999998
Q ss_pred HHHHHHHcCCChh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812 317 SQKVLKTWGLSSE-LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395 (630)
Q Consensus 317 a~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 395 (630)
.+.... ..+.. ........+..+...++-+.|++.+..++..... ......++.++.++.....++.|.......
T Consensus 267 l~~~~p--~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~--~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 267 LLQLDP--PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD--EASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred HHhhCC--chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 887632 11112 2223334577788888889999999998872221 111335667888999999999998877655
Q ss_pred HH----------------------HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812 396 CG----------------------ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453 (630)
Q Consensus 396 ~~----------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 453 (630)
.. +.... ..-++++..+...++.+..+.++..+++..+..--. -.....+.
T Consensus 343 ~~r~~e~d~~e~~~~~~~~~~~~~~~~~~-~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n------~~~~d~~d 415 (895)
T KOG2076|consen 343 RNRESEKDDSEWDTDERRREEPNALCEVG-KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN------VWVSDDVD 415 (895)
T ss_pred hccccCCChhhhhhhhhccccccccccCC-CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc------CChhhhHH
Confidence 44 11100 001112222355666666666776666655432211 11122366
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
.+..++.+|...|++.+|+.++..+... .....+.+|..+|.||..+|.+++|+++|++++. ..|
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--------~~p 480 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--------LAP 480 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--------cCC
Confidence 8899999999999999999999988762 2233467899999999999999999999999998 457
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 563 (630)
+..++...|+.++..+|++++|.+.+.+..
T Consensus 481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 481 DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 777899999999999999999998887743
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.3e-18 Score=157.09 Aligned_cols=274 Identities=14% Similarity=0.067 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
.+....+..++..++|.+..+..+..++.. +-++ .-.-..+| ++...|+..+=..+-.+.++ ..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-----pfh~--~~~~~~ia-~l~el~~~n~Lf~lsh~LV~--------~y 308 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-----PFHL--PCLPLHIA-CLYELGKSNKLFLLSHKLVD--------LY 308 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-----CCCc--chHHHHHH-HHHHhcccchHHHHHHHHHH--------hC
Confidence 455567888899999998888888777543 2222 22334456 77777776654444444443 45
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET 367 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 367 (630)
|..+..|+.+|..|...|++.+|..+|.++-.+ ++....+|...|..+...|..++|+..|..|-+..+..+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~l------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl- 381 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTL------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL- 381 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-
Confidence 566778899999999999999999999998877 7788889999999999999999999999999998877654
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
-...+|.-|...+++.-|.++|.+|+.+. |....++..+|.+....+.|.+|..+|+.++...+.....
T Consensus 382 ---P~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 382 ---PSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred ---hHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 35667888999999999999999999988 5556888999999999999999999999999777776544
Q ss_pred CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
......++.+||.++.+++++++|+.+|++++. ..|..+.++..+|.+|..+|+++.|+++|.+++.+
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 432345679999999999999999999999998 34667778999999999999999999999999985
No 41
>PLN03077 Protein ECB2; Provisional
Probab=99.84 E-value=5.7e-17 Score=175.48 Aligned_cols=330 Identities=12% Similarity=-0.017 Sum_probs=178.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcC
Q 006812 115 GLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEG 194 (630)
Q Consensus 115 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 194 (630)
+..+...+...+ .++.|...+..+++.... .+ ....+.+-..|.+.|+.+.|...|++... +
T Consensus 89 ~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~------~~---~~~~n~li~~~~~~g~~~~A~~~f~~m~~-------~- 150 (857)
T PLN03077 89 YVALFRLCEWKR-AVEEGSRVCSRALSSHPS------LG---VRLGNAMLSMFVRFGELVHAWYVFGKMPE-------R- 150 (857)
T ss_pred HHHHHHHHhhCC-CHHHHHHHHHHHHHcCCC------CC---chHHHHHHHHHHhCCChHHHHHHHhcCCC-------C-
Confidence 344444455555 677777777766543211 11 12334455566677777777666654321 0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc------------------------------
Q 006812 195 LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEED------------------------------ 244 (630)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------ 244 (630)
+ ..+|+.+...|.+.|++++|+..|.+..... ..++
T Consensus 151 ------d-----~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g---~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 151 ------D-----LFSWNVLVGGYAKAGYFDEALCLYHRMLWAG---VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred ------C-----eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 1 1345566666777777777777776654210 0000
Q ss_pred -hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 245 -SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 245 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
......+++.+...|.+.|++++|...|++... + ...+|+.+...|.+.|++++|+..|.+....
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~----d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~--- 282 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-------R----DCISWNAMISGYFENGECLEGLELFFTMREL--- 282 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------C----CcchhHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 000123456677778888888888888776421 1 1245777777888888888888877764332
Q ss_pred cCCChh----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812 324 WGLSSE----------------------------------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA 369 (630)
Q Consensus 324 ~~~~~~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 369 (630)
|..|+ ...+++.+...|.+.|++++|..+|++... ++ .
T Consensus 283 -g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d----~ 354 (857)
T PLN03077 283 -SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KD----A 354 (857)
T ss_pred -CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CC----e
Confidence 22222 233344444445555555555554444321 00 1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC
Q 006812 370 LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH 449 (630)
Q Consensus 370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 449 (630)
.+|+.+...|.+.|++++|.+.|++.... ...++. .++..+-..+...|++++|.+++..+.+. ...
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~---g~~Pd~----~t~~~ll~a~~~~g~~~~a~~l~~~~~~~------g~~ 421 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQD---NVSPDE----ITIASVLSACACLGDLDVGVKLHELAERK------GLI 421 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCCCc----eeHHHHHHHHhccchHHHHHHHHHHHHHh------CCC
Confidence 24444555555555555555555443221 111111 23333334445555555555555544432 122
Q ss_pred chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 450 SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
+...++..+...|.+.|++++|.+.|++..+ + ...+|+.+...|...|++++|+..|++++.
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE----------K-DVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3345666777777777777777777765432 1 123677788888888888888888888753
No 42
>PLN03077 Protein ECB2; Provisional
Probab=99.83 E-value=1.4e-16 Score=172.55 Aligned_cols=406 Identities=11% Similarity=-0.027 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
..|..+-..|...| ++++|+.+|.+..... -. | ...++..+...+...|+.+.|.+.+..+.+.
T Consensus 254 ~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g------~~--P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~------ 317 (857)
T PLN03077 254 ISWNAMISGYFENG-ECLEGLELFFTMRELS------VD--P-DLMTITSVISACELLGDERLGREMHGYVVKT------ 317 (857)
T ss_pred chhHHHHHHHHhCC-CHHHHHHHHHHHHHcC------CC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHh------
Confidence 45666666677777 8888888887765421 00 1 1123334444444555555555555444332
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (630)
...+ ...+++.+...|.+.|++++|...|++... ++ ..+|+.+...|.+.|++++|+++|
T Consensus 318 --------g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d----~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 318 --------GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-------KD----AVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred --------CCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC----eeeHHHHHHHHHhCCCHHHHHHHH
Confidence 0001 123455555666666666666665554210 11 234555555555666666666555
Q ss_pred HHHHHHHhhh----------------------------cCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc
Q 006812 273 LKALEIHKKG----------------------------LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW 324 (630)
Q Consensus 273 ~~al~~~~~~----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 324 (630)
+++.+..-.. ..........+++.|...|.+.|++++|.+.|++..
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~------ 451 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP------ 451 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC------
Confidence 5543211000 000011112345556666777777777766665421
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH-------------------------------HHHHH
Q 006812 325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR-------------------------------ALVFI 373 (630)
Q Consensus 325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-------------------------------~~~~~ 373 (630)
.....+|..+...|...|++++|+.+|+++......+.... ...++
T Consensus 452 ---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 452 ---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred ---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 11234566677777777777777777777664322111100 00122
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 453 (630)
.+...|.+.|++++|...|+.. .....+|+.+...|...|+.++|+++|++..+. ...|+..
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~~ 590 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDEV 590 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCcc
Confidence 3345566666666666655542 012356777888888888888888888876652 2234445
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
++..+...+.+.|++++|..+|+...+.. .-.|+ ...|..+..++.+.|++++|.+.+++.- ..|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---------~~p 655 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---------ITP 655 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---------CCC
Confidence 66677777888888888888888776421 12232 3577788888888888888888877641 123
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------CchhHHHHHHHHHHHHHHHhcCCCCC
Q 006812 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP---------SAQDELREARRLLEQLKIKASGASIN 597 (630)
Q Consensus 534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~A~~~~~~~~~~~~~~~~~ 597 (630)
+ ..+|..|-..+...|+.+.|....++++++-+.... ...|++++|.++.+.|++++...++-
T Consensus 656 d-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 656 D-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 3 245666666777788888877777766654322111 14578999999999999998777543
No 43
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.81 E-value=1.2e-16 Score=139.22 Aligned_cols=321 Identities=14% Similarity=0.020 Sum_probs=230.4
Q ss_pred ChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 153 SLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQK 232 (630)
Q Consensus 153 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (630)
++..+.-...+|..++..|++.+|+..|..|++. .|....+++..|.+|..+|+-.-|+.-+.+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~----------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~r 97 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEG----------------DPNNYQAIFRRATVYLAMGKSKAALQDLSR 97 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------------CchhHHHHHHHHHHHhhhcCCccchhhHHH
Confidence 3455666778999999999999999999999987 556678889999999999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC-------HHHHHHHHHHHHHHhccc
Q 006812 233 CLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS-------VEVAHDRRLLGVIYSGLE 305 (630)
Q Consensus 233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g 305 (630)
++++ .|+...+....|.++.++|.+++|+.-|...++..+....... ......+......+...|
T Consensus 98 Vlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 98 VLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred HHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 9854 3666778888999999999999999999999875442100000 011122333455566788
Q ss_pred cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccH
Q 006812 306 EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKF 385 (630)
Q Consensus 306 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~ 385 (630)
++..|+.+....+++ .|..+..+...+.+|...|+...|+.-++.+-++...+ ...++.++.+++..|+.
T Consensus 170 D~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn----Te~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN----TEGHYKISQLLYTVGDA 239 (504)
T ss_pred chhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc----hHHHHHHHHHHHhhhhH
Confidence 888888888887776 67778888888999999999999999888887765444 33778888888888888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHH
Q 006812 386 ADAKRCLEIACGILDKKETISPEEVADAYSEI---------SMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSA 456 (630)
Q Consensus 386 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 456 (630)
+.++...++.+++... |..-...|-.+ +.-....++|.++++..++.++..+.. .........
T Consensus 240 ~~sL~~iRECLKldpd-----HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r 311 (504)
T KOG0624|consen 240 ENSLKEIRECLKLDPD-----HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFR 311 (504)
T ss_pred HHHHHHHHHHHccCcc-----hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeeh
Confidence 8888888887776421 11111111111 222344556666666666655531110 111133445
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 457 RIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
.+..++...|++.+|+....++++ ..|+.+.++...+.+|.....|+.|+.-|++|.+.
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~--------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLD--------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHh--------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 667777778888888888877776 45677778888888888888888888888888773
No 44
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.81 E-value=2.5e-15 Score=165.30 Aligned_cols=415 Identities=15% Similarity=0.075 Sum_probs=293.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCC
Q 006812 116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGL 195 (630)
Q Consensus 116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 195 (630)
...+..+...| ++.+|+..+..+ ++ ....+..+...+......|++..+..++... .... ...
T Consensus 345 ~raa~~~~~~g-~~~~Al~~a~~a---------~d--~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~---~~~- 407 (903)
T PRK04841 345 RAAAEAWLAQG-FPSEAIHHALAA---------GD--AQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEV---LLE- 407 (903)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHC---------CC--HHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHH---Hhc-
Confidence 33444444454 666665544432 11 1234455556677777888887766665432 1100 000
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006812 196 GGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEE-DSRELGVANRDLAEAFVAVLNFKEALPFGLK 274 (630)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (630)
.+ ......+.++...|++++|..++..+.+........ +..........+|.++...|++++|..++++
T Consensus 408 -------~~---~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 477 (903)
T PRK04841 408 -------NP---RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAEL 477 (903)
T ss_pred -------Cc---chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 123457788889999999999999887654321101 1122345566688999999999999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812 275 ALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTL 354 (630)
Q Consensus 275 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 354 (630)
++..... .+......+...+|.++...|++++|...+++++......+.......++..+|.++...|++++|...+
T Consensus 478 al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 554 (903)
T PRK04841 478 ALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ 554 (903)
T ss_pred HHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9875332 1222345567789999999999999999999999998888777666778899999999999999999999
Q ss_pred HHHHHHhhhcc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812 355 KGVVRQTEKES----ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA 430 (630)
Q Consensus 355 ~~~l~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 430 (630)
++++....... ......+..+|.++...|++++|...+.+++.+..... +.....++..+|.++...|++++|
T Consensus 555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHH
Confidence 99998765432 22344566789999999999999999999998876432 223456778899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchh-HHH-HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812 431 ISLLKRTLALLEKLPQAQHSEG-SVS-ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD 508 (630)
Q Consensus 431 ~~~~~~al~~~~~~~~~~~~~~-~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 508 (630)
...+.++..+...... .... ... ......+...|+.+.|..++....... .+ ........+..++.++...|
T Consensus 632 ~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~-~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 632 RRYLNRLENLLGNGRY--HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FA-NNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred HHHHHHHHHHHhcccc--cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Cc-cchhHHHHHHHHHHHHHHcC
Confidence 9999999887655321 1111 111 112344556899999988876654310 01 11112233567899999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812 509 RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP 571 (630)
Q Consensus 509 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 571 (630)
++++|...+++++...... + .....+.++..+|.++...|+.++|...+.+|+++....|.
T Consensus 706 ~~~~A~~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 706 QFDEAEIILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred CHHHHHHHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 9999999999999986543 2 23466678899999999999999999999999999877665
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=6.7e-16 Score=159.86 Aligned_cols=388 Identities=13% Similarity=0.042 Sum_probs=267.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCC
Q 006812 117 KIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG 196 (630)
Q Consensus 117 ~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 196 (630)
.+..++...| +.++|+.++++++ . +. +.....+..+|.++...|++++|++.|+++++. +
T Consensus 73 dll~l~~~~G-~~~~A~~~~eka~--~-----p~---n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~---------d 132 (822)
T PRK14574 73 DWLQIAGWAG-RDQEVIDVYERYQ--S-----SM---NISSRGLASAARAYRNEKRWDQALALWQSSLKK---------D 132 (822)
T ss_pred HHHHHHHHcC-CcHHHHHHHHHhc--c-----CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------C
Confidence 5666666667 9999999999987 1 11 122344455688999999999999999999887 2
Q ss_pred CCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006812 197 GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKAL 276 (630)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (630)
|+. ..++..++..+...++.++|+..+++++... |.... +..++.++...++..+|+..+++++
T Consensus 133 P~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~~-~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 133 PTN-------PDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQN-YMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred CCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchHH-HHHHHHHHHhcchHHHHHHHHHHHH
Confidence 222 3445577889999999999999988877432 32222 3445566656777777999999988
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhccc---------------------------------------------cHHHHH
Q 006812 277 EIHKKGLGHNSVEVAHDRRLLGVIYSGLE---------------------------------------------EHQKAL 311 (630)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------------------------------~~~~A~ 311 (630)
+..+. .+.. +..+..+....| .+..+-
T Consensus 197 ~~~P~-----n~e~---~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 197 RLAPT-----SEEV---LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HhCCC-----CHHH---HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 76442 1111 111111111111 122222
Q ss_pred HHHHHHHHHHHHcCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHH
Q 006812 312 EQNELSQKVLKTWGLSS----ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD 387 (630)
Q Consensus 312 ~~~~~a~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 387 (630)
..+...-.++...+..| ....+....-.++...|++.+++..|+.......+.+ ..+....|..|...++.++
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P---~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP---DYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC---HHHHHHHHHHHHhcCCcHH
Confidence 22222222333333333 3345556666777889999999999988765332223 3377788999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-C--C----CCCCch-hHHHHHHH
Q 006812 388 AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK-L--P----QAQHSE-GSVSARIG 459 (630)
Q Consensus 388 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~----~~~~~~-~~~~~~la 459 (630)
|+..|..++.-..... .. +........|-..|...+++++|..++++..+..+- . . ...+++ ......++
T Consensus 346 A~~l~~~~~~~~~~~~-~~-~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 346 AAPILSSLYYSDGKTF-RN-SDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHhhcccccc-CC-CcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 9999998765332111 01 122233456778899999999999999998763220 0 0 112223 45667889
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006812 460 WLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEAC 539 (630)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 539 (630)
.++...|++.+|++.+++.+. ..|........+|.++...|.+.+|...++.+.. .+|+...+.
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~--------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--------l~P~~~~~~ 487 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSS--------TAPANQNLRIALASIYLARDLPRKAEQELKAVES--------LAPRSLILE 487 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------hCCccHHHH
Confidence 999999999999999999987 3477778899999999999999999999988877 457777899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 540 QNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
..++.++..+|++++|.......++.++..
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 999999999999999999998888776553
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.7e-16 Score=142.19 Aligned_cols=376 Identities=15% Similarity=0.093 Sum_probs=265.1
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
+|.....|.+...+|...| +|++|++-..+..++. |..+..|..+|..+.-+|+|++|+..|.+.++..
T Consensus 32 ~p~nhvlySnrsaa~a~~~-~~~~al~da~k~~~l~----------p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d 100 (539)
T KOG0548|consen 32 SPTNHVLYSNRSAAYASLG-SYEKALKDATKTRRLN----------PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD 100 (539)
T ss_pred CCCccchhcchHHHHHHHh-hHHHHHHHHHHHHhcC----------CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC
Confidence 4556667777777888888 9999999888877664 4467788999999999999999999999998871
Q ss_pred hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHc-----------------C----CHHHHHHHHHHHHHHHHHH------
Q 006812 188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAM-----------------G----RREEALEHLQKCLEIKELI------ 240 (630)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------g----~~~~A~~~~~~al~~~~~~------ 240 (630)
| .....+..++.++... + ++-..-..|...++..+..
T Consensus 101 ---------~-------~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 101 ---------P-------SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred ---------C-------chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 1 1222222333333111 0 0000011111111111000
Q ss_pred --------------h-------------------cc------------ch------HHHHHHHHHHHHHHHHhcCHHHHH
Q 006812 241 --------------L-------------------EE------------DS------RELGVANRDLAEAFVAVLNFKEAL 269 (630)
Q Consensus 241 --------------~-------------------~~------------~~------~~~~~~~~~la~~~~~~g~~~~A~ 269 (630)
. .+ +. ...+.....+|.......++..|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0 00 00 113556778999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHH
Q 006812 270 PFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFE 348 (630)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 348 (630)
+.|.+++++... ...+.+.+-+|...|.+.+.+.....+++.-...... .....+...+|..|...++++
T Consensus 245 q~y~~a~el~~~---------it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 245 QHYAKALELATD---------ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred HHHHHHHhHhhh---------hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 999999998632 3457788999999999999888888777653332222 334556666888999999999
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812 349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE 428 (630)
Q Consensus 349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 428 (630)
.|+.+|++++..... ..+.......+++....+...-+. |..+.--..-|..++..|+|.
T Consensus 316 ~ai~~~~kaLte~Rt------------~~~ls~lk~~Ek~~k~~e~~a~~~--------pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRT------------PDLLSKLKEAEKALKEAERKAYIN--------PEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred HHHHHHHHHhhhhcC------------HHHHHHHHHHHHHHHHHHHHHhhC--------hhHHHHHHHHHHHHHhccCHH
Confidence 999999998864433 233334444555555444332222 455666666799999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812 429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD 508 (630)
Q Consensus 429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 508 (630)
.|+..|.+++.. ++.+...|.+.|-+|.++|++..|+...+.+++ .+|.....|..-|.++..+.
T Consensus 376 ~Av~~YteAIkr-------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--------L~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 376 EAVKHYTEAIKR-------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--------LDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHHHHHhc-------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cCchHHHHHHHHHHHHHHHH
Confidence 999999998874 233467889999999999999999999999998 36888899999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812 509 RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 509 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 562 (630)
+|++|.+.|+++++ .+|....+...+..++..+.......+.++++
T Consensus 441 ~ydkAleay~eale--------~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 441 EYDKALEAYQEALE--------LDPSNAEAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred HHHHHHHHHHHHHh--------cCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 99999999999998 56777778888888887654444445555553
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=5.8e-16 Score=151.84 Aligned_cols=316 Identities=13% Similarity=0.002 Sum_probs=224.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHH
Q 006812 211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV 290 (630)
Q Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 290 (630)
..-|......|+++.|.+.+.++.+. .|.....+...|.++...|+++.|..++.++.+..+. +.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-----~~-- 152 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-----DN-- 152 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----Cc--
Confidence 45788888999999999999887643 2222455667799999999999999999998764332 11
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812 291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL 370 (630)
Q Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 370 (630)
..+....+.++...|++++|+..++...+. .|....++..++.++...|++++|.+.+.+..+....++.....
T Consensus 153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 153 ILVEIARTRILLAQNELHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 112333488999999999999998877775 57777889999999999999999999999988764333332222
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812 371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS 450 (630)
Q Consensus 371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 450 (630)
.......-+...+..+++...+..+........ +.....+..++..+...|++++|.+.++++++... +..
T Consensus 227 l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~----~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-----d~~ 297 (409)
T TIGR00540 227 LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR----RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-----DDR 297 (409)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH----hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-----Ccc
Confidence 222222222333444444455555544332111 23457888899999999999999999999998522 221
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG--YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
...............++.+.+++.++++++ .+|+.. ..+..+|.++.+.|++++|.++|+++..+.
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--------~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---- 365 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAK--------NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---- 365 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh----
Confidence 111112223333445788888888888887 345555 788899999999999999999999543322
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812 529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP 571 (630)
Q Consensus 529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 571 (630)
.+|+.. .+..+|.++...|+.++|.++|++++...-..++
T Consensus 366 --~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~ 405 (409)
T TIGR00540 366 --EQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD 405 (409)
T ss_pred --cCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 234443 3569999999999999999999999887666544
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=5.7e-18 Score=146.32 Aligned_cols=283 Identities=13% Similarity=0.073 Sum_probs=226.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812 216 VKTAMGRREEALEHLQKCLEIKELILEEDSREL--GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD 293 (630)
Q Consensus 216 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (630)
+++..++...|-......+++........+... -.--..+|.||...|-+.+|.+.++.+++..+ ...+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~---------~~dT 258 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP---------HPDT 258 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC---------chhH
Confidence 455566666666666665555443322222222 22335799999999999999999999987543 2356
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812 294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI 373 (630)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 373 (630)
+..|+.+|....+...|+..+.+.++. -|..+..+..++.++..++++++|.++|+.+++..+.+ ..+..
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n----vEaiA 328 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDS------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN----VEAIA 328 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhc------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc----ceeee
Confidence 778899999999999999998876664 58888899999999999999999999999999865444 34566
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 453 (630)
.+|.-|+..++.+-|..+|++.+++.. .....+.++|.+++..++++-++..|++++....+. ...+.
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~--------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~----~~aaD 396 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGA--------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP----GQAAD 396 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcC--------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc----chhhh
Confidence 677888899999999999999988762 344789999999999999999999999999864322 22367
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
+|+++|.+....|++.-|..+|+-++. .+++...++++||.+-.+.|+.++|..++..|.. ..|
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--------~~P 460 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS--------VMP 460 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--------hCc
Confidence 999999999999999999999999987 6678889999999999999999999999999877 446
Q ss_pred HHHHHHHHHHHH
Q 006812 534 DSIEACQNLSKA 545 (630)
Q Consensus 534 ~~~~~~~~la~~ 545 (630)
+..+..++++.+
T Consensus 461 ~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 461 DMAEVTTNLQFM 472 (478)
T ss_pred cccccccceeEE
Confidence 666666666543
No 49
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.79 E-value=1.4e-15 Score=133.48 Aligned_cols=340 Identities=18% Similarity=0.123 Sum_probs=272.7
Q ss_pred HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812 161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI 240 (630)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (630)
..-|.-++...++++|+..+.+.+.-.....+. ...+-.+..+...+|.|++++.+--..++.+...
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~R-------------f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~ 76 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGR-------------FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL 76 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHH-------------HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445666778888999999999888765544333 2566678889999999999998877777776665
Q ss_pred hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812 241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320 (630)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 320 (630)
++......++.+++..+...-++.+++.+.+..+.+-..-.+ ..-......++..+..++.+++++++|+.|+++
T Consensus 77 --~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~ 151 (518)
T KOG1941|consen 77 --EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRY 151 (518)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 555666889999999999999999999988877764321111 122345566899999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc------chHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812 321 LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE------SETRALVFISMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 321 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 394 (630)
....++......++..+|.++....++++|.-+..++.++.... ......+++.|+..+..+|...+|.++.++
T Consensus 152 A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E 231 (518)
T KOG1941|consen 152 AHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE 231 (518)
T ss_pred hhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 99999888888999999999999999999999999998876542 233466788999999999999999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChh-----
Q 006812 395 ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVP----- 469 (630)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----- 469 (630)
+.++.-..+ +.+..+.....+|.+|...|+.+.|..-|+.|..+.... ++....+.++...+.++....-..
T Consensus 232 a~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~C 308 (518)
T KOG1941|consen 232 AMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNC 308 (518)
T ss_pred HHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999887665 557788999999999999999999999999999988777 444445667777777776544444
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 470 QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 470 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
.|+++-++++++..++ | ....+......++.+|..+|.-++-...+.++-+.
T Consensus 309 rale~n~r~levA~~I-G-~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 309 RALEFNTRLLEVASSI-G-AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred chhHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4999999999988776 2 33456677889999999999988877777776553
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=2.8e-17 Score=142.15 Aligned_cols=282 Identities=16% Similarity=0.103 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH--HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV--EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
|.+..+++. .+|+..++...|-......+++........+. ....--..+|.+|..+|-+.+|.+.++.++.-
T Consensus 178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--- 252 (478)
T KOG1129|consen 178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--- 252 (478)
T ss_pred hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---
Confidence 444555543 45667778888887777666655432222221 22333467999999999999999999987773
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhc
Q 006812 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE 403 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 403 (630)
...+.++..++.+|.+..+...|+..+.+.++.++.+ ...+..++.++..++++++|.++|+.+++..
T Consensus 253 ----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~----VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~---- 320 (478)
T KOG1129|consen 253 ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD----VTYLLGQARIHEAMEQQEDALQLYKLVLKLH---- 320 (478)
T ss_pred ----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch----hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC----
Confidence 4457788899999999999999999999999866554 4577889999999999999999999988764
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812 404 TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK 483 (630)
Q Consensus 404 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 483 (630)
+...++.-.+|.-|+..++.+-|+.+|++.+.+ |...| ..+.++|.+++..++++-++..|++++....
T Consensus 321 ----~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~sp--eLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 321 ----PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQSP--ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred ----CccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCCh--HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 344566667888899999999999999999997 54444 4889999999999999999999999998542
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812 484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 563 (630)
+....+++|+++|.+....|++.-|..+|+-++. ++++..+++++||.+-.+.|+.++|..++..|-
T Consensus 390 -----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 390 -----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred -----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 3456678999999999999999999999999988 778888999999999999999999999999987
Q ss_pred HHHHH
Q 006812 564 DAWES 568 (630)
Q Consensus 564 ~~~~~ 568 (630)
...+.
T Consensus 457 s~~P~ 461 (478)
T KOG1129|consen 457 SVMPD 461 (478)
T ss_pred hhCcc
Confidence 66544
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.77 E-value=1.4e-14 Score=126.45 Aligned_cols=321 Identities=14% Similarity=0.077 Sum_probs=243.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
.++....-.+.+|..++..| .+..|+..|..|++.. |..-.+++..|.+|..+|+-.-|+..+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~-Q~sDALt~yHaAve~d----------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARG-QLSDALTHYHAAVEGD----------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHcCC----------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 45666777889999999999 9999999999998754 345667889999999999999999999999998
Q ss_pred HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc-c------hHHHHHHHHHHHHHH
Q 006812 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEE-D------SRELGVANRDLAEAF 259 (630)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~------~~~~~~~~~~la~~~ 259 (630)
.|....+....|.++.++|++++|+.-|.++++-....... + .......+......+
T Consensus 102 ----------------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 102 ----------------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA 165 (504)
T ss_pred ----------------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55566777889999999999999999999988543211000 0 001122333445556
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812 260 VAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN 339 (630)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 339 (630)
...|++..|+++....+++. +..+..+...+.+|...|+...|+.-+..+-++ ..+....++.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL------s~DnTe~~ykis~ 231 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL------SQDNTEGHYKISQ 231 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------cccchHHHHHHHH
Confidence 77899999999999988853 345667778899999999999999988877776 5667888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHH---------HHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812 340 MQIALGKFEEAINTLKGVVRQTEKESETRALVFISM---------GKALCNQEKFADAKRCLEIACGILDKKETISPEEV 410 (630)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l---------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 410 (630)
+++..|+.+.++...+++++..+.+..-.+ .|-.+ +.-....++|.++++..++.++.... ..+..
T Consensus 232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~-~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~----~~~ir 306 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKLDPDHKLCFP-FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE----ETMIR 306 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHccCcchhhHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc----cccee
Confidence 999999999999999999997665432111 12222 22334455566666555554443211 11223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
......+..++..-|++.+|+..+.+++++ ++.++.++...+.+|.-...|+.|+.-|++|.+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDI-------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhc-------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 345556778889999999999999999885 334578999999999999999999999999998
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.76 E-value=2.8e-14 Score=138.08 Aligned_cols=386 Identities=17% Similarity=0.123 Sum_probs=237.7
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.+..|..+.......|+|..+.+.|++++... -.....|+.++.+|...|....|+...++.+.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~----------------~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS----------------FGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----------------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 34456677788888999999999999988762 22346788999999999999999999888774
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc----------
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE---------- 305 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------- 305 (630)
..+ ..++....+..-..++...+.+++++.+..+++...... ........+..+|.+|..+-
T Consensus 386 ~~~-----~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~ 457 (799)
T KOG4162|consen 386 KSE-----QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERD 457 (799)
T ss_pred ccc-----CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHH
Confidence 432 122233444445566778899999999999999966432 23344566777777775432
Q ss_pred -cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812 306 -EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK 384 (630)
Q Consensus 306 -~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 384 (630)
...+++..+++|++. ++.+..+.+.++.-|..+++.+.|.++.+++++..+.+. +.+|..++.++...++
T Consensus 458 ~~h~kslqale~av~~------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~---~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQF------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS---AKAWHLLALVLSAQKR 528 (799)
T ss_pred HHHHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHhhhhh
Confidence 234455555555554 566668889999999999999999999999999855444 4489999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCc------------HHHHHHHHHH-----------------------HHHHHHcCCHHH
Q 006812 385 FADAKRCLEIACGILDKKETISP------------EEVADAYSEI-----------------------SMQYESMNEFET 429 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~l-----------------------a~~~~~~g~~~~ 429 (630)
+.+|+...+.++.-...+.+..+ .....+...+ +.+....++..+
T Consensus 529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence 99999999998887655221100 0000000000 001111222333
Q ss_pred HHHHHHHHHHHHHhC----------------CCCCCch---hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 430 AISLLKRTLALLEKL----------------PQAQHSE---GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 430 A~~~~~~al~~~~~~----------------~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
|...+.++..+.... .++.++. ...|...+..+...++.++|..++.++-.+ .
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~ 680 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------D 680 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------c
Confidence 333333333322110 0011110 123345556666666666666666666553 2
Q ss_pred ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHH---
Q 006812 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIE--FQQRAIDA--- 565 (630)
Q Consensus 491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~--- 565 (630)
|..+..|+..|.++...|+.++|.+.|..|+.+ +|+...+...+|.++...|+..-|.. ++..++++
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 555556666666666666666666666666652 23333555566666666666555555 56666543
Q ss_pred ----HHHcCC--CchhHHHHHHHHHHHHHHH
Q 006812 566 ----WESHGP--SAQDELREARRLLEQLKIK 590 (630)
Q Consensus 566 ----~~~~~~--~~~~~~~~A~~~~~~~~~~ 590 (630)
|..+|. ...|+.++|...|....+.
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 222222 1345555566666554443
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=3.1e-18 Score=159.64 Aligned_cols=266 Identities=18% Similarity=0.206 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 006812 254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRA 333 (630)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 333 (630)
.+|.++...|++++|++.+.+.+.... .+.....+..+|.+....++++.|+..|++.+.. ++.....
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~------~~~~~~~ 80 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS------DKANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccc------ccccccc
Confidence 569999999999999999976654321 1223355667899999999999999999988765 3334555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812 334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA 413 (630)
Q Consensus 334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (630)
+..++.+ ...+++++|+.++.++.+..+. ...+..+..++...++++++...++.+.... ..+.....
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~ 148 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDGD-----PRYLLSALQLYYRLGDYDEAEELLEKLEELP------AAPDSARF 148 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------T-HHH
T ss_pred ccccccc-cccccccccccccccccccccc-----cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------CCCCCHHH
Confidence 6667777 7999999999999888764321 2355667778899999999999999876422 12355678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812 414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV 493 (630)
Q Consensus 414 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 493 (630)
+..+|.++...|++++|+..|+++++. .++ +..+...++.++...|+++++.+.+....... +.+|.
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~--~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~- 215 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALEL-----DPD--DPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPD- 215 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHH-
Confidence 899999999999999999999999997 222 23477889999999999999888887776632 23343
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
.+..+|.++..+|++++|+.+|++++. .+|+...++..+|.++...|+.++|..++++++...
T Consensus 216 --~~~~la~~~~~lg~~~~Al~~~~~~~~--------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 216 --LWDALAAAYLQLGRYEEALEYLEKALK--------LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp --HCHHHHHHHHHHT-HHHHHHHHHHHHH--------HSTT-HHHHHHHHHHHT-------------------
T ss_pred --HHHHHHHHhcccccccccccccccccc--------cccccccccccccccccccccccccccccccccccc
Confidence 567889999999999999999999988 446666889999999999999999999999988654
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=1.7e-17 Score=154.74 Aligned_cols=265 Identities=20% Similarity=0.146 Sum_probs=111.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 006812 212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVA 291 (630)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 291 (630)
.+|.++...|++++|++.+.+.+... ..+.....+..+|.+....++++.|+..|++++..... ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--------~~ 78 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--------NP 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc--------cc
Confidence 57999999999999999997654321 12344577888999999999999999999999875432 22
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV 371 (630)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 371 (630)
..+..++.+ ...+++++|+.+++++.+. ......+.....++...++++++...++++..... .+.....
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 148 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYER-------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA--APDSARF 148 (280)
T ss_dssp -----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHH
T ss_pred ccccccccc-ccccccccccccccccccc-------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--CCCCHHH
Confidence 345566666 6899999999988876553 12234455667788999999999999999775321 2233668
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812 372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE 451 (630)
Q Consensus 372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 451 (630)
+..+|.++...|+.++|+.+++++++.. |+...+...++.++...|+++++.+.+.......+. +
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-------~ 213 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELD--------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-------D 213 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-------S
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-------H
Confidence 9999999999999999999999999987 566678888999999999999988888777665321 1
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
...+..+|.++...|++++|+.+|++++. .+|....++..+|.++...|+.++|..++++++..
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~--------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALK--------LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHH--------HSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHHhcccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence 23678899999999999999999999987 35667778899999999999999999999998764
No 55
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.75 E-value=6.1e-14 Score=154.34 Aligned_cols=394 Identities=15% Similarity=0.028 Sum_probs=276.4
Q ss_pred cccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHH
Q 006812 104 SSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKA 183 (630)
Q Consensus 104 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (630)
...+.+..+......+......| ++..+..+.... ..... .. ++. .....+.++...|++++|...+.++
T Consensus 366 ~a~d~~~~~~ll~~~a~~l~~~g-~~~~l~~~l~~l-p~~~~---~~--~~~---l~~~~a~~~~~~g~~~~a~~~l~~a 435 (903)
T PRK04841 366 AAGDAQLLRDILLQHGWSLFNQG-ELSLLEECLNAL-PWEVL---LE--NPR---LVLLQAWLAQSQHRYSEVNTLLARA 435 (903)
T ss_pred HCCCHHHHHHHHHHhHHHHHhcC-ChHHHHHHHHhC-CHHHH---hc--Ccc---hHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344444455556666666666 777665555432 11101 11 112 2345677888999999999999988
Q ss_pred HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Q 006812 184 NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL 263 (630)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (630)
........... ...........++.++...|++++|..+++++++.... .+......+...+|.++...|
T Consensus 436 ~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 436 EQELKDRNIEL-------DGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHhccccCccc-------chhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcC
Confidence 76633211000 01123345556889999999999999999999864211 222234566788999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHH
Q 006812 264 NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS--SELLRAEIDAANMQ 341 (630)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~ 341 (630)
++++|...+++++....... .......++.++|.++...|++++|..++++++.+....+.. +.....+..+|.++
T Consensus 506 ~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 99999999999999877542 223345577889999999999999999999999998876543 33445567789999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH-HHHHHHHHH
Q 006812 342 IALGKFEEAINTLKGVVRQTEKE-SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV-ADAYSEISM 419 (630)
Q Consensus 342 ~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~ 419 (630)
...|++++|...+.+++...... .......+..++.++...|++++|...+.++..+..... .+... .........
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--YHSDWIANADKVRLI 661 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccHhHhhHHHHHHHH
Confidence 99999999999999998876543 223456777899999999999999999999988765432 11111 111111234
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812 420 QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN 499 (630)
Q Consensus 420 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 499 (630)
.+...|+.+.|..++...... ...........+..++.++...|++++|...+++++...... + .....+.++..
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~-g-~~~~~a~~~~~ 736 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKP---EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL-R-LMSDLNRNLIL 736 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCC---CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C-chHHHHHHHHH
Confidence 455688999998887664331 101111112235678999999999999999999999976553 2 33466778889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHH
Q 006812 500 LGAAYLELDRPQSAAQVFAFAKDIMDV 526 (630)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~al~~~~~ 526 (630)
+|.++...|+.++|...+.+++++...
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999998743
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=8.5e-15 Score=142.76 Aligned_cols=301 Identities=15% Similarity=0.083 Sum_probs=215.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE 289 (630)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (630)
.+.-|......|+|++|.+...++-+. .+.| ...+...+.+....|+++.|..++.++.+..+. . .
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-----~-~ 152 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADH------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELADN-----D-Q 152 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-----c-h
Confidence 345677777789999999776654321 1223 233445567779999999999999999874332 1 1
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812 290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA 369 (630)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 369 (630)
. ......+.++...|++++|+..+++..+. .|....++..++.+|...|++++|+..+.+..+....++....
T Consensus 153 ~-~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 153 L-PVEITRVRIQLARNENHAARHGVDKLLEV------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred H-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 1 12223488999999999999999887775 6788889999999999999999999999998876544333222
Q ss_pred ----HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812 370 ----LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445 (630)
Q Consensus 370 ----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 445 (630)
.++..+........+-+...++++. .... .+........++..+...|+.++|...++++++.
T Consensus 226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~----lp~~----~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----- 292 (398)
T PRK10747 226 MLEQQAWIGLMDQAMADQGSEGLKRWWKN----QSRK----TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----- 292 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHh----CCHH----HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 2333322222222222222222222 2111 1344577788999999999999999999998872
Q ss_pred CCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
+.++ ......+. ...++++++++..++.++ .+|+.+..+..+|.++...|++++|.++|+++++.
T Consensus 293 -~~~~--~l~~l~~~--l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 293 -QYDE--RLVLLIPR--LKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred -CCCH--HHHHHHhh--ccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 2222 12222222 245899999999998887 67888889999999999999999999999999984
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 526 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
.|+.. .+..++.++...|+.++|.++|++++...
T Consensus 358 ------~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 358 ------RPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 35543 56789999999999999999999998764
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.75 E-value=1.6e-14 Score=127.07 Aligned_cols=344 Identities=16% Similarity=0.162 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
.-.+..|..++... ++++|+..+.+.+....+. ......+..+..+...+|.|++++.+--..++.+....+
T Consensus 7 k~q~~~g~~Ly~s~-~~~~al~~w~~~L~~l~~~-------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d 78 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSN-QTEKALQVWTKVLEKLSDL-------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED 78 (518)
T ss_pred HHHHHHHHhHhcCc-hHHHHHHHHHHHHHHHHHH-------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888 9999999999998877554 234456667788899999999999888777777766654
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (630)
.. ....++.+++..+....++.+++.+-+..+.+--...+ ..-......+|..+...+.++++++.|
T Consensus 79 s~----------~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesf 145 (518)
T KOG1941|consen 79 SD----------FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESF 145 (518)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHH
Confidence 33 55678889999999999999999887776643211110 112355667899999999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC----hhHHHHHHHHHHHHHHcCCHH
Q 006812 273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS----SELLRAEIDAANMQIALGKFE 348 (630)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~ 348 (630)
++|+++..... +......++..||.+|....++++|+-+..+|.++.+..+.. .....+++.++..+..+|..-
T Consensus 146 e~A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg 223 (518)
T KOG1941|consen 146 EKALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG 223 (518)
T ss_pred HHHHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 99999987642 333445678899999999999999999999999999988744 234567888999999999999
Q ss_pred HHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCC
Q 006812 349 EAINTLKGVVRQTEK--ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNE 426 (630)
Q Consensus 349 ~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 426 (630)
.|.++.+++.++.-. +....+.....+|.+|...|+.+.|..-|+.|..+....+ +......++...+.++....-
T Consensus 224 dA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g--drmgqv~al~g~Akc~~~~r~ 301 (518)
T KOG1941|consen 224 DAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG--DRMGQVEALDGAAKCLETLRL 301 (518)
T ss_pred cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999887654 3456688888999999999999999999999998876654 233445666667776665544
Q ss_pred HHH-----HHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812 427 FET-----AISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERL 482 (630)
Q Consensus 427 ~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 482 (630)
..+ |+++-.+.+++...+ |..+....+...++.+|..+|.-++-...+.++-+..
T Consensus 302 ~~k~~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 302 QNKICNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred hhcccccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 444 999999999998888 5555556677899999999999888888777766543
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=6.5e-15 Score=144.50 Aligned_cols=313 Identities=12% Similarity=0.059 Sum_probs=220.6
Q ss_pred HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE 238 (630)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 238 (630)
....-|.+....|+++.|.+.+.++.+. .+.....+...|.+...+|+++.|..++.++.+..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~----------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~- 148 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH----------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA- 148 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 3456788888999999999999887665 11112345567999999999999999999987432
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 006812 239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQ 318 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 318 (630)
++.. ..+....+.++...|++++|...+++.++..+ ++ ..++..++.++...|++++|.+.+.+..
T Consensus 149 ----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P-----~~---~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 149 ----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEMAP-----RH---KEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred ----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1211 12334458999999999999999999887543 33 3567788999999999999999988766
Q ss_pred HHHHHcCCChhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812 319 KVLKTWGLSSELL-RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397 (630)
Q Consensus 319 ~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 397 (630)
+.. ..++... ........-....+..+++.+.+..+....+...+.....+..++..+...|++++|...++++++
T Consensus 215 k~~---~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 215 KAG---LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HcC---CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 541 1122222 222222222244455555666777777765544333466888999999999999999999999988
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812 398 ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES 477 (630)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (630)
..... +... ............++.+.+++.++++++. .++.+.......+|+++.+.|++++|.++|++
T Consensus 292 ~~pd~-----~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 292 KLGDD-----RAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKN-----VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred hCCCc-----ccch-hHHHHHhhhcCCCChHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 65321 1110 0122223334457888888888888764 23333235778999999999999999999995
Q ss_pred --HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 478 --AAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 478 --al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
+++ .+|+... +..+|.++...|+.++|.++|++++....
T Consensus 361 a~a~~--------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 361 VAACK--------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred hHHhh--------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 544 2344433 55999999999999999999999987643
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=1.2e-14 Score=141.51 Aligned_cols=339 Identities=10% Similarity=-0.038 Sum_probs=236.1
Q ss_pred ChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 153 SLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQK 232 (630)
Q Consensus 153 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (630)
+|+.+.++..+|.++...|+.+.+...+.++....... . .........+.++...|++++|...+++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~e~~~~~a~~~~~~g~~~~A~~~~~~ 68 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR---------A----TERERAHVEALSAWIAGDLPKALALLEQ 68 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC---------C----CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35678889999999999999999988888877763221 1 1123455678899999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHH
Q 006812 233 CLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALE 312 (630)
Q Consensus 233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (630)
+++.. +++ ..++.. +..+...|++..+.....+++.. ..+.++.....+..+|.++...|++++|+.
T Consensus 69 ~l~~~-----P~~---~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 135 (355)
T cd05804 69 LLDDY-----PRD---LLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEE 135 (355)
T ss_pred HHHHC-----CCc---HHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 98543 222 234443 66666666666666666665543 233566667778889999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006812 313 QNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCL 392 (630)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 392 (630)
.+++++++ .|.....+..+|.++...|++++|+.++++++...+..+......+..++.++...|++++|...+
T Consensus 136 ~~~~al~~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 136 AARRALEL------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999987 566678889999999999999999999999998766544444557788999999999999999999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh
Q 006812 393 EIACGILDKKETISPEEVADAYS--EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470 (630)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 470 (630)
++++..... .......+. .+...+...|....+..+ +.......... +.+.........+.++...|+.++
T Consensus 210 ~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 210 DTHIAPSAE-----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHhccccC-----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHH
Confidence 998543210 111111111 222333344433333322 22222211111 112122222468888899999999
Q ss_pred HHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812 471 AIPYLESAAERLKESF-GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530 (630)
Q Consensus 471 A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 530 (630)
|...++.......... ..............+.++...|++++|.+.+..++.+.....|.
T Consensus 283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 9999998877655410 01123345566788999999999999999999999988766554
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=3.7e-14 Score=123.02 Aligned_cols=304 Identities=15% Similarity=0.087 Sum_probs=231.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCC
Q 006812 117 KIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG 196 (630)
Q Consensus 117 ~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 196 (630)
-.|..+.-.. +.++|++.|...++.. +....+...||+.|.+.|..+.|+...+..+..
T Consensus 40 v~GlNfLLs~-Q~dKAvdlF~e~l~~d----------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---------- 98 (389)
T COG2956 40 VKGLNFLLSN-QPDKAVDLFLEMLQED----------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---------- 98 (389)
T ss_pred HhHHHHHhhc-CcchHHHHHHHHHhcC----------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------
Confidence 3455555555 8999999999988743 345677789999999999999999988766553
Q ss_pred CCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006812 197 GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKAL 276 (630)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (630)
|+.+ ......++..||.-|...|-++.|+..|....+.- .....++..|..+|....+|++|++..++..
T Consensus 99 pdlT--~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--------efa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 99 PDLT--FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EFAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred CCCc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 22344678899999999999999999999866422 2235678899999999999999999999888
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 277 EIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG 356 (630)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (630)
.+..+ +...+++..|..++..+....+.+.|+..+.+|++. +|..+.+-+.+|.++...|+|+.|++.++.
T Consensus 169 k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 169 KLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred HcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHH
Confidence 77654 256689999999999999999999999999999987 788888999999999999999999999999
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 357 VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR 436 (630)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 436 (630)
+++. ++.....+...|..+|..+|+.++...++.++.+..... .....++.+-....-.+.|..++.+
T Consensus 240 v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~---------~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 240 VLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA---------DAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred HHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc---------cHHHHHHHHHHHhhChHHHHHHHHH
Confidence 8875 555667788899999999999999999999987765321 2334455555566667777777766
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHHHc---CChhhHHHHHHHHHH
Q 006812 437 TLALLEKLPQAQHSEGSVSARIGWLLLLT---GKVPQAIPYLESAAE 480 (630)
Q Consensus 437 al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~ 480 (630)
-+.- +|.......+....... |...+.+..++..+.
T Consensus 308 Ql~r--------~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 308 QLRR--------KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHhh--------CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5552 45545555555554433 334455555555443
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.9e-13 Score=120.55 Aligned_cols=291 Identities=14% Similarity=0.076 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812 246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG 325 (630)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 325 (630)
+.....+..+|.+++..|++.+|+..|+++.-+ +|.........|.+....|+++.-.......+.+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~----- 295 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK----- 295 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-----
Confidence 444678899999999999999999999998764 3344555556688888889888766555444433
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812 326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI 405 (630)
Q Consensus 326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 405 (630)
......-++--+...+..+++..|+.+-++++...+.+.+ ++...|.++...|+.++|.-.|+.|..+.
T Consensus 296 -~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~----alilKG~lL~~~~R~~~A~IaFR~Aq~La------ 364 (564)
T KOG1174|consen 296 -VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE----ALILKGRLLIALERHTQAVIAFRTAQMLA------ 364 (564)
T ss_pred -hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch----HHHhccHHHHhccchHHHHHHHHHHHhcc------
Confidence 2223334455567778899999999999999997666655 88889999999999999999999998876
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHH-HHHHH-cCChhhHHHHHHHHHHHHH
Q 006812 406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIG-WLLLL-TGKVPQAIPYLESAAERLK 483 (630)
Q Consensus 406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~ 483 (630)
|....+|..|-.+|...|++.+|...-+.++..+... +.++..+| .++.. -.--++|..++++++.
T Consensus 365 --p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--- 432 (564)
T KOG1174|consen 365 --PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--- 432 (564)
T ss_pred --hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHhhhc---
Confidence 6777899999999999999999999988888765432 23444454 33332 2234789999999998
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812 484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 563 (630)
-.|....+-..++.++...|.+++++..+++.+..+ ++. ..+..||.++...+.+++|+++|..|+
T Consensus 433 -----~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 433 -----INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------PDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred -----cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------ccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 457778888899999999999999999999999854 333 478899999999999999999999999
Q ss_pred HHHHHcCCCchhHHHHHHHHHHHHHHHhcCC
Q 006812 564 DAWESHGPSAQDELREARRLLEQLKIKASGA 594 (630)
Q Consensus 564 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 594 (630)
.+-+ +-+++.+-++++.+....+
T Consensus 499 r~dP--------~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 499 RQDP--------KSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred hcCc--------cchHHHHHHHHHHhccCCC
Confidence 7632 2234555566665554433
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=1.3e-15 Score=125.86 Aligned_cols=204 Identities=15% Similarity=0.107 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcH
Q 006812 329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPE 408 (630)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 408 (630)
....+...+|.-|+..|++..|...++++++..++ ...++..++.+|...|+.+.|.+.|++|+++. |
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--------p 100 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALSLA--------P 100 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--------C
Confidence 34567778888999999999999999999985443 35588899999999999999999999998876 5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
....+++|.|..++.+|++++|...|++|+. .+..+. ..++.++|.|..+.|+++.|..+|++++++
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~------ 168 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL------ 168 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh------
Confidence 6678899999999999999999999999987 344433 568899999999999999999999999983
Q ss_pred CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
+|........++...+..|+|..|..++++... ..+-.++++.....+-...|+-+.|-.+=.+....+
T Consensus 169 --dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~--------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 169 --DPQFPPALLELARLHYKAGDYAPARLYLERYQQ--------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred --CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh--------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 344455677889999999999999988887655 223445667767778888888888877766655443
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=8.2e-13 Score=125.55 Aligned_cols=408 Identities=15% Similarity=0.127 Sum_probs=266.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
..|+.+..+...|..+...| +-++|..+...+++.. +....||..+|.++....+|++|+.+|+.|+.+
T Consensus 36 k~~eHgeslAmkGL~L~~lg-~~~ea~~~vr~glr~d----------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLG-KKEEAYELVRLGLRND----------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred hCCccchhHHhccchhhccc-chHHHHHHHHHHhccC----------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 34888888888999999999 9999999999988743 234569999999999999999999999999998
Q ss_pred HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFK 266 (630)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (630)
.+....++..++....++++++-....-.+.++.. |..-..|...+..+.-.|++.
T Consensus 105 ----------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 105 ----------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred ----------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHH
Confidence 23335678889999999999998887777766444 444677889999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC
Q 006812 267 EALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK 346 (630)
Q Consensus 267 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 346 (630)
.|....+...................+......+....|.+++|++.+..-..- ..+........+.++..+++
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhh
Confidence 999998887765542222222233444455566777778877777765532211 13344455567888999999
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHH----------HHHHhh-c-------------------cHHHHH-------
Q 006812 347 FEEAINTLKGVVRQTEKESETRALVFISMG----------KALCNQ-E-------------------KFADAK------- 389 (630)
Q Consensus 347 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la----------~~~~~~-~-------------------~~~~A~------- 389 (630)
+++|...|...+...+++....-.....+| .+|... . ++.+..
T Consensus 235 lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 999999998888766654332211111111 000000 0 000000
Q ss_pred -------------H---------HHHHHHHHHHh-hcC------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812 390 -------------R---------CLEIACGILDK-KET------------ISPEEVADAYSEISMQYESMNEFETAISLL 434 (630)
Q Consensus 390 -------------~---------~~~~a~~~~~~-~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 434 (630)
. .+++.+..+.. ..+ ..+......++.++.-+-..|+++.|..++
T Consensus 315 l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 315 LSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred hhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 11111111110 001 122344566677788888888888888888
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHH
Q 006812 435 KRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAA 514 (630)
Q Consensus 435 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 514 (630)
+.|++- .+..+..+..-|.++...|++++|..+++++.++ +.++.. +-..-|.-..+.++.++|.
T Consensus 395 d~AIdH-------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-------D~aDR~-INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 395 DLAIDH-------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-------DTADRA-INSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHhcc-------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------cchhHH-HHHHHHHHHHHccccHHHH
Confidence 888762 2233556677788888888888888888887773 222221 1114566667777888887
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHH-HHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 515 QVFAFAKDIMDVSLGPHHADSIE-ACQN--LSKAYSSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 515 ~~~~~al~~~~~~~~~~~~~~~~-~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
+...+.-.-.... -++....+ .|+. -|..|.++|++-.|++-|...-+++.....+
T Consensus 460 ~~~skFTr~~~~~--~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~d 518 (700)
T KOG1156|consen 460 EVLSKFTREGFGA--VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSED 518 (700)
T ss_pred HHHHHhhhcccch--hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 7665543321110 11222222 2333 3788999999999999999888888876554
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=5.7e-14 Score=121.90 Aligned_cols=236 Identities=15% Similarity=0.070 Sum_probs=133.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 006812 213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAH 292 (630)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (630)
-|.-+.-..+.++|++.|...++ .+|...++...||.+|...|..+.|+.+.+..++- +. -.......
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pd---lT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PD---LTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CC---CchHHHHH
Confidence 45555566777888888877663 44556777788888888888888888777665431 10 01223445
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-chHHHHH
Q 006812 293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE-SETRALV 371 (630)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~ 371 (630)
++..||.-|...|-++.|...|....+. ......++..|..+|....+|++|++..++..+..++. ....+..
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf 182 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF 182 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 5666677777777776666666543331 12233455556666666666666666666655554433 2334555
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812 372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE 451 (630)
Q Consensus 372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 451 (630)
|..++..+....+.+.|...+.+|++.. |....+-..+|.++...|++..|++.++.+++-. ....
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~--------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn------~~yl 248 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQAD--------KKCVRASIILGRVELAKGDYQKAVEALERVLEQN------PEYL 248 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhC--------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhC------hHHH
Confidence 5555555555555555555555555443 2333444555555555555555555555555421 1111
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
..+...|..+|.++|+.++.+.++.++.+
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445555555555555555555555554
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.72 E-value=7.1e-14 Score=135.33 Aligned_cols=358 Identities=20% Similarity=0.081 Sum_probs=258.1
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccC-----------hHHHH
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKR-----------FSDSL 177 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------~~~A~ 177 (630)
|.....++..+.++...-+.+++++.+..+++...... .+...+.++..+|.+|..+-. ..+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~-----~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ-----RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh-----hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 44445555566655555459999999999999976333 123456777888888754322 44566
Q ss_pred HHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 006812 178 GYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAE 257 (630)
Q Consensus 178 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (630)
+.++++++. ++.++ .+.+.++.-|..+++.+.|.++.++++++... +.+.++..++.
T Consensus 465 qale~av~~---------d~~dp-------~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~-------~~~~~whLLAL 521 (799)
T KOG4162|consen 465 QALEEAVQF---------DPTDP-------LVIFYLALQYAEQRQLTSALDYAREALALNRG-------DSAKAWHLLAL 521 (799)
T ss_pred HHHHHHHhc---------CCCCc-------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-------ccHHHHHHHHH
Confidence 666666665 22222 45667999999999999999999999976321 22678999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---hhHHHHH
Q 006812 258 AFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS---SELLRAE 334 (630)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~ 334 (630)
++...+++.+|+.....+++-.... +. ....-..+-...++.++|+......+.+.+....- -+.....
T Consensus 522 vlSa~kr~~~Al~vvd~al~E~~~N----~~----l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~ 593 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEEFGDN----HV----LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLL 593 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHHhhhh----hh----hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhh
Confidence 9999999999999999999876642 11 11122333444788888888887777765521110 1112222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhh--------------------c--chHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006812 335 IDAANMQIALGKFEEAINTLKGVVRQTEK--------------------E--SETRALVFISMGKALCNQEKFADAKRCL 392 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------------------~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 392 (630)
...+.+....++..+|+..++++...... + .......|...+..+...++.++|..++
T Consensus 594 ~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL 673 (799)
T KOG4162|consen 594 RLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCL 673 (799)
T ss_pred hhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 22333444455666666666655443211 0 0112446677889999999999999999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHH
Q 006812 393 EIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAI 472 (630)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 472 (630)
.++-.+. +..+..|+..|.++...|++.+|.+.|..|+.+ ++++ +.+...+|.++...|+..-|.
T Consensus 674 ~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-----dP~h--v~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 674 LEASKID--------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-----DPDH--VPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred HHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-----CCCC--cHHHHHHHHHHHHhCCcchHH
Confidence 9998876 678899999999999999999999999999987 4443 347889999999999988888
Q ss_pred H--HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 473 P--YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 473 ~--~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
. ++..++++ +|....+|+.+|.++..+|+.++|.++|..|+++-.
T Consensus 739 ~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 739 KRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 8 99999983 466777999999999999999999999999998753
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.72 E-value=2.1e-15 Score=153.57 Aligned_cols=250 Identities=12% Similarity=-0.022 Sum_probs=182.1
Q ss_pred cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 006812 263 LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL---------EEHQKALEQNELSQKVLKTWGLSSELLRA 333 (630)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 333 (630)
+.+++|+.+|++++++.+ ..+.++..+|.+|... +++++|+..+++++++ +|+...+
T Consensus 275 ~~~~~A~~~~~~Al~ldP--------~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l------dP~~~~a 340 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP--------NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL------DHNNPQA 340 (553)
T ss_pred HHHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc------CCCCHHH
Confidence 457899999999998543 3355667777766533 4478899988888886 7778888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812 334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA 413 (630)
Q Consensus 334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (630)
+..+|.++...|++++|+..|+++++..+.+ +.+++.+|.++...|++++|+..+++++++. |.....
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--------P~~~~~ 408 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPIS----ADIKYYYGWNLFMAGQLEEALQTINECLKLD--------PTRAAA 408 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCChhh
Confidence 8889999999999999999999999875544 4478888999999999999999999988875 222233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812 414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV 493 (630)
Q Consensus 414 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 493 (630)
+..++.++...|++++|+..+++++... .+.....+..+|.++...|++++|...+.+... ..|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--------~~~~~ 474 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH------LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--------QEITG 474 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--------ccchh
Confidence 4445556777888999999888877631 111234678889999999999999998877654 34555
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 563 (630)
......++..|...| ++|...+++.++..... +.+ ...++.+|.-.|+.+.|..+ +++.
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNN------PGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHhhhHHHHHH-HHhh
Confidence 666777888888877 47777777766644321 111 22377788888888887766 5554
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=2e-15 Score=138.01 Aligned_cols=205 Identities=12% Similarity=0.100 Sum_probs=165.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP 407 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 407 (630)
......+..+|.++...|++++|+..+++++...+.+ ..++..+|.++...|++++|...+++++...
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------- 95 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLGELEKAEDSFRRALTLN-------- 95 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------
Confidence 4456778889999999999999999999988754333 4578889999999999999999999998764
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
|.....+.++|.++...|++++|+.++++++... ........+..+|.++...|++++|..++++++..
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 164 (234)
T TIGR02521 96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI------ 164 (234)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 2334678889999999999999999999998631 11122456788999999999999999999999873
Q ss_pred CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
.|.....+..+|.++...|++++|..++++++... |.....+..++.++...|+.++|..+.+.+...
T Consensus 165 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 165 --DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY--------NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred --CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 24445678899999999999999999999998851 223356667889999999999999888776544
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.71 E-value=3.6e-15 Score=151.92 Aligned_cols=222 Identities=10% Similarity=0.028 Sum_probs=181.3
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Q 006812 305 EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL---------GKFEEAINTLKGVVRQTEKESETRALVFISM 375 (630)
Q Consensus 305 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 375 (630)
+++++|+.+|++++++ +|....++..+|.+|... +++++|+..++++++..+.+ +.++..+
T Consensus 275 ~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~----~~a~~~l 344 (553)
T PRK12370 275 YSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN----PQALGLL 344 (553)
T ss_pred HHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC----HHHHHHH
Confidence 5678999999999886 788888888999887644 34899999999999976554 4488899
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHH
Q 006812 376 GKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVS 455 (630)
Q Consensus 376 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 455 (630)
|.++...|++++|+..+++++++. |..+.++..+|.++...|++++|+..+++++++ .+.++ ..+
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~~--~~~ 409 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTINECLKL-----DPTRA--AAG 409 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCh--hhH
Confidence 999999999999999999999875 566678999999999999999999999999997 33322 234
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
..++.+++..|++++|+..+++++.. ..|.....+..+|.++..+|++++|...+++... ..|..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--------~~~~~ 474 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--------QEITG 474 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--------ccchh
Confidence 45566677899999999999998862 2355566788999999999999999999988755 45666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
......++..|...|+ +|...+++.++....
T Consensus 475 ~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 475 LIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 6778889999998884 888888887665544
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=1.9e-13 Score=133.21 Aligned_cols=339 Identities=14% Similarity=0.085 Sum_probs=233.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812 204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL 283 (630)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (630)
|.....+..+|.++...|+.+.+...+.++....... ..........+.++...|++++|...++++++..+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-- 75 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-- 75 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--
Confidence 4456778899999999999999988888877655432 223455667789999999999999999999986442
Q ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
+. .++.. +..+...|++..+.....+++.. ..+..+........+|.++...|++++|+..++++++..+.
T Consensus 76 ---~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~ 146 (355)
T cd05804 76 ---DL---LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD 146 (355)
T ss_pred ---cH---HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 22 22322 44555555544444444444433 23445777888889999999999999999999999997665
Q ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
+ ...+..+|.++...|++++|+.++++++..... .+......+..+|.++...|++++|+..|++++.....
T Consensus 147 ~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 147 D----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred C----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 5 447889999999999999999999999876532 11233456778999999999999999999998543110
Q ss_pred CCCCCCchhHH--HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006812 444 LPQAQHSEGSV--SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAK 521 (630)
Q Consensus 444 ~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 521 (630)
....... ...+...+...|....+..+ +.+........ +. +.....-...+.++...|+.++|...++...
T Consensus 219 ----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 219 ----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred ----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1111111 11233344445554444443 22222221111 11 1122222367888899999999999999887
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCc
Q 006812 522 DIMDVSL-GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSA 573 (630)
Q Consensus 522 ~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 573 (630)
....... .........+....+.++...|++++|.+.+..++.....+|-.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~ 344 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH 344 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 7654410 011223446777889999999999999999999999998887653
No 70
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.7e-14 Score=129.26 Aligned_cols=286 Identities=13% Similarity=0.075 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
+.-....|..++... +|.+|+..|..|+++.+. .+..|.+.+.++...|+|++|....++.+.+-
T Consensus 49 Ae~~k~~gn~~yk~k-~Y~nal~~yt~Ai~~~pd----------~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k---- 113 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQK-TYGNALKNYTFAIDMCPD----------NASYYSNRAATLMMLGRFEEALGDARQSVRLK---- 113 (486)
T ss_pred HHHHHhhcchHHHHh-hHHHHHHHHHHHHHhCcc----------chhhhchhHHHHHHHHhHhhcccchhhheecC----
Confidence 344455677777777 999999999999998743 36678889999999999999999999988871
Q ss_pred hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHhcc--chHHHHHHHHHHHHHHHH
Q 006812 192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL--------EIKELILEE--DSRELGVANRDLAEAFVA 261 (630)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~ 261 (630)
+.....+...+.++...++..+|...++..- .....+... ..|....+-..-+.++..
T Consensus 114 ------------d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~ 181 (486)
T KOG0550|consen 114 ------------DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF 181 (486)
T ss_pred ------------CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh
Confidence 2222345567777777777777776655211 111111111 114445555667899999
Q ss_pred hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc------CCChhHHHHHH
Q 006812 262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW------GLSSELLRAEI 335 (630)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~ 335 (630)
.|++++|...--..+++.. ....++..-|.+++..++.+.|+.+|++++.+-... ...+.....+.
T Consensus 182 ~~~~~~a~~ea~~ilkld~--------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDA--------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred cccchhHHHHHHHHHhccc--------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 9999999987666665432 345667777999999999999999999999873222 22255666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812 336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS 415 (630)
Q Consensus 336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (630)
.-|.-.++.|++..|.+.|.+++.+.+.+....+..|.+.+.+..++|+..+|+.-.+.++.+. +....++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syikall 325 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIKALL 325 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHHHHH
Confidence 7899999999999999999999999999888889999999999999999999999999999986 67889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 416 EISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 416 ~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
..|.++...++|++|++.|+++++.
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999986
No 71
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=1.2e-12 Score=124.36 Aligned_cols=341 Identities=15% Similarity=0.038 Sum_probs=237.0
Q ss_pred HHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 158 MCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK 237 (630)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 237 (630)
..+..-+..+.+.+.++-|...|..+++. .|..-.++...+..-..-|..+.-..++++++..+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv----------------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV----------------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh----------------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 34455556666777777777777777776 23333556666666677788888888888888655
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 006812 238 ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELS 317 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (630)
++ .-..+...+.-++..|+...|...+..+.+..+ ++. .++..-..+.....+++.|..+|.++
T Consensus 581 pk--------ae~lwlM~ake~w~agdv~~ar~il~~af~~~p-----nse---eiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 581 PK--------AEILWLMYAKEKWKAGDVPAARVILDQAFEANP-----NSE---EIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred Cc--------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-----CcH---HHHHHHHHHhhccccHHHHHHHHHHH
Confidence 32 234566677888888999999999998887544 222 33444456677788999999988887
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812 318 QKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397 (630)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 397 (630)
... .....+++.-+.+...+++.++|+.+++++++.++.. ...|..+|+++...++.+.|...|...++
T Consensus 645 r~~-------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f----~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 645 RSI-------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF----HKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred hcc-------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch----HHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 663 3345667777888889999999999999999966544 44899999999999999999999988877
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812 398 ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES 477 (630)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (630)
.+ |.....|..++.+-...|+.-.|...++++.-- ++.....|.....+-.+.|+.++|.....+
T Consensus 714 ~c--------P~~ipLWllLakleEk~~~~~rAR~ildrarlk-------NPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 714 KC--------PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK-------NPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred cC--------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc-------CCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66 566678889999999999999999999988652 222345677778888899999999999999
Q ss_pred HHHHHHHh--------c--CC------------CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 478 AAERLKES--------F--GP------------KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 478 al~~~~~~--------~--~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
|++-+... . +. .......++..+|..+....++++|.++|.+++. ..|+.
T Consensus 779 ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--------~d~d~ 850 (913)
T KOG0495|consen 779 ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--------KDPDN 850 (913)
T ss_pred HHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--------cCCcc
Confidence 88733211 0 00 0001122444555555566666666666666655 33445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 536 IEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
.+++..+-..+...|.-++-.+.+.++..
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 55555555555556655555555555443
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.69 E-value=1.5e-12 Score=123.85 Aligned_cols=377 Identities=14% Similarity=0.080 Sum_probs=262.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
..++....-.+..+ +|.+.+...+..|+-. |....++...|..+..+|+-++|..+...++..
T Consensus 8 ~~lF~~~lk~yE~k-QYkkgLK~~~~iL~k~----------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~------ 70 (700)
T KOG1156|consen 8 NALFRRALKCYETK-QYKKGLKLIKQILKKF----------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN------ 70 (700)
T ss_pred HHHHHHHHHHHHHH-HHHhHHHHHHHHHHhC----------CccchhHHhccchhhcccchHHHHHHHHHHhcc------
Confidence 34555555666666 8999999988887733 234556777999999999999999999988875
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (630)
++....+|..+|.++....+|++|+++|+.|+.+. ++....+..++.+..++++++-....-
T Consensus 71 ----------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--------~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 71 ----------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--------KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ----------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 22334678899999999999999999999999654 334678999999999999999998888
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHHHHcCCHHH
Q 006812 273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS---SELLRAEIDAANMQIALGKFEE 349 (630)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~ 349 (630)
.+.++..+. ....|...+..+...|++..|....+........ +.+ ............+....|.+++
T Consensus 133 ~~LLql~~~--------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~-~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 133 NQLLQLRPS--------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT-SPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred HHHHHhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 887775443 3355777889999999999999988876665541 222 2334455566777888888888
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH------
Q 006812 350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES------ 423 (630)
Q Consensus 350 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~------ 423 (630)
|.+.+..--.. ..+........+.++..++++++|...+...+.... +....+..+-.++..
T Consensus 204 ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP--------dn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 204 ALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP--------DNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc--------hhHHHHHHHHHHHHHHhhhHH
Confidence 88777653221 111233445678889999999999988887665442 222222221111110
Q ss_pred ---------------------------cC-CHHHHH-----------------------------HHHHHHHHHHHhCCC
Q 006812 424 ---------------------------MN-EFETAI-----------------------------SLLKRTLALLEKLPQ 446 (630)
Q Consensus 424 ---------------------------~g-~~~~A~-----------------------------~~~~~al~~~~~~~~ 446 (630)
.| ++.+.. .++++.+..+....+
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~ 351 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLS 351 (700)
T ss_pred HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcc
Confidence 00 000000 012222211111111
Q ss_pred C------------CCch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH
Q 006812 447 A------------QHSE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS 512 (630)
Q Consensus 447 ~------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 512 (630)
. .+|. ...++.++.-+...|+++.|..+.+.|+. ..|...+.+..-|.++...|++++
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHH
Confidence 1 1333 34457889999999999999999999997 678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006812 513 AAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQR 561 (630)
Q Consensus 513 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 561 (630)
|..++.++.++ +.++.. +-..-|....+.++.++|.+...+
T Consensus 424 Aa~~l~ea~el-------D~aDR~-INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 424 AAAWLDEAQEL-------DTADRA-INSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHhc-------cchhHH-HHHHHHHHHHHccccHHHHHHHHH
Confidence 99999999875 334322 223567777888888888776543
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=1.2e-14 Score=120.38 Aligned_cols=205 Identities=19% Similarity=0.118 Sum_probs=175.0
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
....+.+...||.-|...|++..|...+++|++. +|....++..+|.+|...|+.+.|.+.|++++.+.+++.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G- 103 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG- 103 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-
Confidence 3456778889999999999999999999999997 899999999999999999999999999999999776664
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812 367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ 446 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 446 (630)
.++++.|..++.+|++++|...|++|+..- .-+..+.++.|+|.|..+.|+++.|.++|++++++.+..
T Consensus 104 ---dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-- 172 (250)
T COG3063 104 ---DVLNNYGAFLCAQGRPEEAMQQFERALADP------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-- 172 (250)
T ss_pred ---chhhhhhHHHHhCCChHHHHHHHHHHHhCC------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--
Confidence 499999999999999999999999997632 234567899999999999999999999999999973332
Q ss_pred CCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
......++..++..|+|..|..++++... ..+..+..+.....+-...|+-+.|-++=.+...
T Consensus 173 -----~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~--------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 173 -----PPALLELARLHYKAGDYAPARLYLERYQQ--------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred -----ChHHHHHHHHHHhcccchHHHHHHHHHHh--------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23678899999999999999999988765 2235666777777888889998888777666554
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=2.1e-14 Score=133.82 Aligned_cols=244 Identities=17% Similarity=0.082 Sum_probs=175.4
Q ss_pred cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006812 263 LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI 342 (630)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 342 (630)
+..+.++..+.+++...+ .+....+..++.+|.+|...|++++|+..|++++++ .|+...++..+|.++.
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL------RPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHH
Confidence 456777777777775332 134466788999999999999999999999999887 7888999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Q 006812 343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE 422 (630)
Q Consensus 343 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 422 (630)
..|++++|+..|+++++..+.+ ..++.++|.++...|++++|+..+++++..... .+. ...+ ..+..
T Consensus 110 ~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-----~~~-~~~~---~~l~~ 176 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELDPTY----NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-----DPY-RALW---LYLAE 176 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHH-HHHH---HHHHH
Confidence 9999999999999999976554 448899999999999999999999999876421 121 1122 12345
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 006812 423 SMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGA 502 (630)
Q Consensus 423 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 502 (630)
..+++++|+..+.++.... .+. .+ ..+.++...|+..++ ..++.+.+..... ....+....+|+++|.
T Consensus 177 ~~~~~~~A~~~l~~~~~~~-------~~~--~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~-~~l~~~~~ea~~~Lg~ 244 (296)
T PRK11189 177 SKLDPKQAKENLKQRYEKL-------DKE--QW-GWNIVEFYLGKISEE-TLMERLKAGATDN-TELAERLCETYFYLAK 244 (296)
T ss_pred ccCCHHHHHHHHHHHHhhC-------Ccc--cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCc-HHHHHHHHHHHHHHHH
Confidence 5788999999998766421 111 11 135566667777655 3444444311100 0012455679999999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006812 503 AYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS 548 (630)
Q Consensus 503 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 548 (630)
++...|++++|+.+|++++.+. .++..+..+.+..+...
T Consensus 245 ~~~~~g~~~~A~~~~~~Al~~~-------~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 245 YYLSLGDLDEAAALFKLALANN-------VYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHH
Confidence 9999999999999999999842 23555554444444433
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=1.8e-14 Score=131.78 Aligned_cols=205 Identities=19% Similarity=0.113 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
....+..+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++...+.+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-- 98 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-- 98 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Confidence 3355678889999999999999999999998775 46667888999999999999999999999999876544
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812 367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ 446 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 446 (630)
...+..+|.++...|++++|...+++++.... .+.....+..+|.++...|++++|..++.+++...
T Consensus 99 --~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 165 (234)
T TIGR02521 99 --GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID----- 165 (234)
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 34788999999999999999999999986421 13345678889999999999999999999998862
Q ss_pred CCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
+. ....+..+|.++...|++++|..++++++.. .+.....+..++.++...|+.++|..+.+.+..
T Consensus 166 ~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 166 PQ--RPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 22 2357789999999999999999999999884 133445666889999999999999998877654
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=1.7e-14 Score=134.36 Aligned_cols=223 Identities=16% Similarity=0.037 Sum_probs=163.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
..+.++..+.+++...+. .....+..++.+|.+|...|++++|+..|++++.+ .|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~ 98 (296)
T PRK11189 41 QQEVILARLNQILASRDL------TDEERAQLHYERGVLYDSLGLRALARNDFSQALAL----------------RPDMA 98 (296)
T ss_pred HHHHHHHHHHHHHccccC------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCH
Confidence 567788888887754321 12346788999999999999999999999999998 33445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
.+++.+|.++...|++++|+..|++++++. |....++.++|.++...|++++|+..++++++..+ ++
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P-----~~ 165 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP-----ND 165 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC
Confidence 788999999999999999999999999654 33467899999999999999999999999998654 33
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hhc
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQT---EKE 364 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~ 364 (630)
+. ...+ ..+....+++++|+..+.++.... ++.. + ..+.++...|+..++ ..+..+.+.. ...
T Consensus 166 ~~-~~~~---~~l~~~~~~~~~A~~~l~~~~~~~-----~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l 231 (296)
T PRK11189 166 PY-RALW---LYLAESKLDPKQAKENLKQRYEKL-----DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNTEL 231 (296)
T ss_pred HH-HHHH---HHHHHccCCHHHHHHHHHHHHhhC-----Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH
Confidence 32 1111 223455789999999997755321 1111 1 134555566766544 2344443322 222
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812 365 SETRALVFISMGKALCNQEKFADAKRCLEIACGIL 399 (630)
Q Consensus 365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 399 (630)
.+....+|+.+|.++...|++++|+.+|++++...
T Consensus 232 ~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 232 AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34456799999999999999999999999998764
No 77
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.68 E-value=3.2e-13 Score=134.04 Aligned_cols=432 Identities=13% Similarity=0.052 Sum_probs=270.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
..|..+|..|...+ ++..|+..|+-+++..+ ....++..+|.+|...|++..|++.|.+|..+
T Consensus 563 ~nW~~rG~yyLea~-n~h~aV~~fQsALR~dP----------kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------ 625 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAH-NLHGAVCEFQSALRTDP----------KDYNLWLGLGEAYPESGRYSHALKVFTKASLL------ 625 (1238)
T ss_pred hhhhhccccccCcc-chhhHHHHHHHHhcCCc----------hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc------
Confidence 45677888888888 99999999999998753 45678899999999999999999999999887
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG 272 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 272 (630)
.|.-....+..+......|+|.+|+..+...+.....-. ......+.++..++..+...|-+.+|..++
T Consensus 626 ----------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 626 ----------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred ----------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 344445667789999999999999999998876554321 223456788888888889999999999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHHHHh---c--------------------cccH---H---HHHHHHHHHHHHHHH
Q 006812 273 LKALEIHKKGLGHNSVEVAHDRRLLGVIYS---G--------------------LEEH---Q---KALEQNELSQKVLKT 323 (630)
Q Consensus 273 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~--------------------~g~~---~---~A~~~~~~a~~~~~~ 323 (630)
+++++.+.-............+..+|.... . .+.. + -+.+++-..+.+
T Consensus 695 eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--- 771 (1238)
T KOG1127|consen 695 EKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--- 771 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH---
Confidence 998876653321110111111111111110 0 0000 0 111222222221
Q ss_pred cCCChhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhhhcch-----------------------------
Q 006812 324 WGLSSELLRAEIDAANMQIA--------LGKFEEAINTLKGVVRQTEKESE----------------------------- 366 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~~~~~~----------------------------- 366 (630)
......+.++|..|+. +.+...|+..++++++...++..
T Consensus 772 ----~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep 847 (1238)
T KOG1127|consen 772 ----AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEP 847 (1238)
T ss_pred ----hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccc
Confidence 1225566666666554 22234677777777765443221
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812 367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ 446 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 446 (630)
.....|.++|.++....+++-|...+..+..+. |.....|...+.+....|+.-++...+...-++....
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd--------P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~-- 917 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD--------PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE-- 917 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC--------chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc--
Confidence 112244555555555555555555555554443 4555666666666666666666666665543332221
Q ss_pred CCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH--HHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE--RLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
...+....+..-.......|++++-+...+++-. +.-+.+-..+|+...++...|.....++.+++|.+.+.+.+.+.
T Consensus 918 gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglL 997 (1238)
T KOG1127|consen 918 GKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLL 997 (1238)
T ss_pred cccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222334455556667777887776665554322 11111223688999999999999999999999999999999887
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHH-cCCC----chhHHHHHHHHHHHHHHHh
Q 006812 525 DVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA-IDAWES-HGPS----AQDELREARRLLEQLKIKA 591 (630)
Q Consensus 525 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~-~~~~----~~~~~~~A~~~~~~~~~~~ 591 (630)
+..+.....+ .+-...|+++...|+++.|...+... .+..+. .|-+ ..+++.++...|+++....
T Consensus 998 e~k~d~sqyn--vak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis 1068 (1238)
T KOG1127|consen 998 ELKLDESQYN--VAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSIS 1068 (1238)
T ss_pred HHHHhhhhhh--hhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhc
Confidence 7665432222 25567788899999988776554322 111111 1111 2456777888887765543
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.67 E-value=1.4e-13 Score=136.50 Aligned_cols=398 Identities=12% Similarity=0.007 Sum_probs=237.5
Q ss_pred cCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHH
Q 006812 106 FDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANR 185 (630)
Q Consensus 106 ~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (630)
.-|+..+.++..+|..|.+.- |...|..+|.+|.++... .+.+.-..+..|....+++.|....-.+-+
T Consensus 486 rld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDat----------daeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDAT----------DAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred hcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCch----------hhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 367788888888888888887 888888888888766532 233444566666666677666666333222
Q ss_pred HHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCH
Q 006812 186 MLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNF 265 (630)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 265 (630)
.... ......+..+|..|...+++..|+..|+.++. .+|....++..+|.+|...|++
T Consensus 555 ka~a--------------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--------~dPkD~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 555 KAPA--------------FACKENWVQRGPYYLEAHNLHGAVCEFQSALR--------TDPKDYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred hchH--------------HHHHhhhhhccccccCccchhhHHHHHHHHhc--------CCchhHHHHHHHHHHHHhcCce
Confidence 2111 11112334467777777777777777777773 3344466777777777777777
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHc
Q 006812 266 KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG-LSSELLRAEIDAANMQIAL 344 (630)
Q Consensus 266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~ 344 (630)
..|++.|.++..+.+ .....-+..+.+....|+|.+|+..+...+....... ...+.+.++...+..+...
T Consensus 613 ~~AlKvF~kAs~LrP--------~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~ 684 (1238)
T KOG1127|consen 613 SHALKVFTKASLLRP--------LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAIT 684 (1238)
T ss_pred ehHHHhhhhhHhcCc--------HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 777777777766433 2233445566667777777777777766555432211 1134455555555555555
Q ss_pred CCHHHHHHHHHHHHHHhhh---------------------------------------------------cc--------
Q 006812 345 GKFEEAINTLKGVVRQTEK---------------------------------------------------ES-------- 365 (630)
Q Consensus 345 g~~~~A~~~~~~~l~~~~~---------------------------------------------------~~-------- 365 (630)
|-+.+|..+++++++.+.. +.
T Consensus 685 gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 685 GFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 5555555555554432210 00
Q ss_pred -------hHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812 366 -------ETRALVFISMGKALCN--------QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA 430 (630)
Q Consensus 366 -------~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 430 (630)
...+..|+++|.-|.. +.+...|+.++.+++++... ....|+.||.+ ...|++.-|
T Consensus 765 ~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an--------n~~~WnaLGVl-sg~gnva~a 835 (1238)
T KOG1127|consen 765 GIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN--------NEGLWNALGVL-SGIGNVACA 835 (1238)
T ss_pred hhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc--------cHHHHHHHHHh-hccchhhhh
Confidence 0012345666665554 12334677888888777632 33566667666 455777777
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH--------
Q 006812 431 ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGA-------- 502 (630)
Q Consensus 431 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~-------- 502 (630)
..+|-+++...+. ....|.++|.++....+++.|.+.+.++..+. |.....+...+.
T Consensus 836 QHCfIks~~sep~-------~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd--------P~nl~~WlG~Ali~eavG~i 900 (1238)
T KOG1127|consen 836 QHCFIKSRFSEPT-------CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD--------PLNLVQWLGEALIPEAVGRI 900 (1238)
T ss_pred hhhhhhhhhcccc-------chhheeccceeEEecccHHHhhHHHHhhhhcC--------chhhHHHHHHHHhHHHHHHH
Confidence 7777766653211 23466777777777777777777776655421 222222333333
Q ss_pred -------------------------------HHHHcCChhHHHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812 503 -------------------------------AYLELDRPQSAAQVFAFAKD--IMDVSLGPHHADSIEACQNLSKAYSSM 549 (630)
Q Consensus 503 -------------------------------~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~la~~~~~~ 549 (630)
.....|++++-+...+++-. +..+.+-..+|+...++...|.....+
T Consensus 901 i~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL 980 (1238)
T KOG1127|consen 901 IERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHL 980 (1238)
T ss_pred HHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHH
Confidence 33344455544444433221 111112236788888899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 006812 550 GSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 550 g~~~~A~~~~~~al~~~~~ 568 (630)
+.+.+|.+.+.+.+.+.+.
T Consensus 981 ~ey~~a~ela~RliglLe~ 999 (1238)
T KOG1127|consen 981 EEYRAALELATRLIGLLEL 999 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887776
No 79
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=2.3e-13 Score=132.73 Aligned_cols=304 Identities=12% Similarity=0.025 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL 190 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 190 (630)
.+...+..|......| |+++|.+...++-+. .+ .| ...+...+.+....|+++.|..++.++.+..+.
T Consensus 83 ~~~~~~~~gl~a~~eG-d~~~A~k~l~~~~~~------~~--~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~- 150 (398)
T PRK10747 83 RARKQTEQALLKLAEG-DYQQVEKLMTRNADH------AE--QP--VVNYLLAAEAAQQRGDEARANQHLERAAELADN- 150 (398)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhc------cc--ch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-
Confidence 4455667787777788 999999666653321 11 11 223444566769999999999999999875111
Q ss_pred hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHH
Q 006812 191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270 (630)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (630)
... ......+.++...|++++|+..+++..+.. |....++..++.+|...|++++|+.
T Consensus 151 -------------~~~-~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--------P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 151 -------------DQL-PVEITRVRIQLARNENHAARHGVDKLLEVA--------PRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred -------------chH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 111 122245899999999999999999987443 4445778889999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCHHHH----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcC
Q 006812 271 FGLKALEIHKKGLGHNSVEVA----HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL-SSELLRAEIDAANMQIALG 345 (630)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g 345 (630)
.+.+..+.... +..... .++..+........+- +.+.+. .+.... .+........++..+...|
T Consensus 209 ~l~~l~k~~~~----~~~~~~~l~~~a~~~l~~~~~~~~~~----~~l~~~---w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 209 ILPSMAKAHVG----DEEHRAMLEQQAWIGLMDQAMADQGS----EGLKRW---WKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHHHHcCCC----CHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHH---HHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 99887764321 111111 1221211111111121 222221 122211 2556778889999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC
Q 006812 346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN 425 (630)
Q Consensus 346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 425 (630)
+.++|...++++++. +. ++. .....+ ....++.+++++.+++.++.. |+.+..+..+|.++...+
T Consensus 278 ~~~~A~~~L~~~l~~-~~-~~~---l~~l~~--~l~~~~~~~al~~~e~~lk~~--------P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 278 DHDTAQQIILDGLKR-QY-DER---LVLLIP--RLKTNNPEQLEKVLRQQIKQH--------GDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred CHHHHHHHHHHHHhc-CC-CHH---HHHHHh--hccCCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCC
Confidence 999999999999883 22 222 111222 224489999999888876543 566688899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812 426 EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERL 482 (630)
Q Consensus 426 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 482 (630)
++++|.++|+++++. .|+...+..++.++.+.|+.++|..+|++++.+.
T Consensus 343 ~~~~A~~~le~al~~--------~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 343 EWQEASLAFRAALKQ--------RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999985 2344567789999999999999999999998754
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=6.2e-15 Score=138.17 Aligned_cols=270 Identities=19% Similarity=0.134 Sum_probs=199.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHH
Q 006812 253 RDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR 332 (630)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 332 (630)
+..|..+.+.|+..+|.-.|+.++. ..|..+.+|..||.+....++-..|+..+++++++ +|....
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L------dP~Nle 354 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL------DPTNLE 354 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc------CCccHH
Confidence 3468889999999999999999987 56777899999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH---HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA---LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
++..||..|...|.-.+|+.++.+-+...++...... ........-......+..-.+.|-.+.. .... ..
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~---~~~~---~~ 428 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAAR---QLPT---KI 428 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHH---hCCC---CC
Confidence 9999999999999999999999988764432100000 0000000000000111112222222222 2111 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK 489 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (630)
.+.+...||.+|...|+|++|+.+|+.|+.. .+.+...|+.||-.+....+.++|+..|.+|+++
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-------- 493 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-------- 493 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------
Confidence 3477889999999999999999999999984 3335678999999999999999999999999994
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHhcCCHHHHHH
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD--SIEACQNLSKAYSSMGSYTLAIE 557 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~ 557 (630)
.|..+.+.++||..+..+|.|++|..+|-.|+.+..+..+..... .-.+|..|-.++..+++.+-+..
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 477888999999999999999999999999999987743322111 12455555566666776664443
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=5e-13 Score=117.48 Aligned_cols=369 Identities=13% Similarity=0.088 Sum_probs=231.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
||..|+.+++-.+...++. ....-.++|.|++.+|+|++|...|.-+..- +. .-+
T Consensus 37 DytGAislLefk~~~~~EE---------E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------------~~--~~~ 91 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREE---------EDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--------------DD--APA 91 (557)
T ss_pred cchhHHHHHHHhhccchhh---------hHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--------------CC--CCc
Confidence 8999999888766443322 2344567999999999999999999766542 11 113
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHHh--------ccchHHHHHHHHHHHHHHHHhcCHHHHH
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLE----------IKELIL--------EEDSRELGVANRDLAEAFVAVLNFKEAL 269 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~----------~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 269 (630)
....+|+.+++..|.|.+|...-.++-+ +.-+.. ...-.+..+-...|+.+.+..-.|++|+
T Consensus 92 el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 92 ELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 5566899999999999999887665421 010100 0000122233445677777777888888
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc--CC-
Q 006812 270 PFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL--GK- 346 (630)
Q Consensus 270 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~--g~- 346 (630)
+.|.+.+. ++++....-..++.+|+++.-++-+.+.+.-.+ +..+++ ..+.+..+...++. |+
T Consensus 172 dvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL---~q~pdS---tiA~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 172 DVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL---RQFPDS---TIAKNLKACNLFRLINGRT 237 (557)
T ss_pred HHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH---HhCCCc---HHHHHHHHHHHhhhhccch
Confidence 88888775 566666667788999999998888877665433 333333 33333333333222 21
Q ss_pred ---------------HHHHHHHHHH----------HHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812 347 ---------------FEEAINTLKG----------VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDK 401 (630)
Q Consensus 347 ---------------~~~A~~~~~~----------~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 401 (630)
|..+..+++. +++..+..-...+.+..++...|.++++..+|......
T Consensus 238 ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd------- 310 (557)
T KOG3785|consen 238 AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD------- 310 (557)
T ss_pred hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-------
Confidence 2222222222 22222322233466788899999999999998876654
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc--hhHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812 402 KETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS--EGSVSARIGWLLLLTGKVPQAIPYLESAA 479 (630)
Q Consensus 402 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 479 (630)
.. |....-|...|.++...|+--...+.++-|-+.+.-+.+.... ...-...++.+++-..++++.+.++...-
T Consensus 311 l~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 311 LD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred cC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3444667777888888887766666666666555444221111 12234567777777788888888777655
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812 480 ERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQ 559 (630)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 559 (630)
..+ ..++ ...++++.++...|+|.+|.+.|-+.-. ++-.+.......||.||...|.++-|-+.+
T Consensus 387 sYF----~NdD----~Fn~N~AQAk~atgny~eaEelf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 387 SYF----TNDD----DFNLNLAQAKLATGNYVEAEELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHh----cCcc----hhhhHHHHHHHHhcChHHHHHHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 433 1121 2456888999999999999888866532 222233345567889999988888887776
Q ss_pred HH
Q 006812 560 QR 561 (630)
Q Consensus 560 ~~ 561 (630)
-+
T Consensus 452 lk 453 (557)
T KOG3785|consen 452 LK 453 (557)
T ss_pred Hh
Confidence 54
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.3e-12 Score=118.36 Aligned_cols=403 Identities=14% Similarity=0.090 Sum_probs=254.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh-------
Q 006812 116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG------- 188 (630)
Q Consensus 116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------- 188 (630)
+..+.|.|+.+ ..++|+..++- +. . .....+...|.+++++|+|++|...|+..++--.
T Consensus 83 fEKAYc~Yrln-k~Dealk~~~~-~~---~---------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~ 148 (652)
T KOG2376|consen 83 FEKAYCEYRLN-KLDEALKTLKG-LD---R---------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER 148 (652)
T ss_pred HHHHHHHHHcc-cHHHHHHHHhc-cc---c---------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 67888889998 99999998871 11 1 1123556788999999999999999987743211
Q ss_pred ---------HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccch-------HHHHHHH
Q 006812 189 ---------RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDS-------RELGVAN 252 (630)
Q Consensus 189 ---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~ 252 (630)
..... +-...+.+.......+++.+.++...|+|.+|++.+++++.++++.+..++ .++..+.
T Consensus 149 r~nl~a~~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 149 RANLLAVAAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred HHHHHHHHHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 00000 011122223344577889999999999999999999999999887654332 2456677
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHH-HHHHHHH-----HHHHHHHcCC
Q 006812 253 RDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQK-ALEQNEL-----SQKVLKTWGL 326 (630)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~-----a~~~~~~~~~ 326 (630)
..++.++..+|+.++|...|...+.... .+.+..+.+-+||..+-....-++. ++..++. +-.....+.
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~----~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls- 302 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRNP----ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS- 302 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhcC----CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH-
Confidence 8899999999999999999998887544 3666777777777665444433331 1111111 000000000
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES-ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI 405 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 405 (630)
.......+.+.+.+.+..+..+.+.+..... +... .....++.. .........+.+|.+++...-+-
T Consensus 303 ~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l----p~~~p~~~~~~ll~-~~t~~~~~~~~ka~e~L~~~~~~------- 370 (652)
T KOG2376|consen 303 KKQKQAIYRNNALLALFTNKMDQVRELSASL----PGMSPESLFPILLQ-EATKVREKKHKKAIELLLQFADG------- 370 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC----CccCchHHHHHHHH-HHHHHHHHHHhhhHHHHHHHhcc-------
Confidence 0122334555566666666655555444332 2222 221222222 22222222456666655543221
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812 406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES 485 (630)
Q Consensus 406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (630)
.+.....+...++.+...+|+++.|++.+...+.........-.....+-..+-.++.+.++-+-|...+.+++..++..
T Consensus 371 ~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 371 HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ 450 (652)
T ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 22233567788899999999999999999865543322222111112244556667888888888999999999987765
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006812 486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQ 560 (630)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 560 (630)
... .+.....+..++..-.+.|+-++|...+++.++ .+|...+++..+...|... +.++|..+-+
T Consensus 451 ~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--------~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 451 QTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELVK--------FNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred ccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--------hCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 432 244455666778888888999999999999988 3456667788887777765 5667666543
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.6e-11 Score=115.65 Aligned_cols=407 Identities=15% Similarity=0.141 Sum_probs=259.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCc
Q 006812 121 KLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVE 200 (630)
Q Consensus 121 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 200 (630)
.+...+ +|++|+....+.+.+.++ ...++..--.+....++|++|+...+.-...
T Consensus 21 ~~~~~~-e~e~a~k~~~Kil~~~pd----------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-------------- 75 (652)
T KOG2376|consen 21 RHGKNG-EYEEAVKTANKILSIVPD----------DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-------------- 75 (652)
T ss_pred Hhccch-HHHHHHHHHHHHHhcCCC----------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------------
Confidence 344555 999999999888776522 2344555567778889999998555432221
Q ss_pred cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 201 DIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
.......+.-+.|.++.+..++|+..++- + .+.+ ..++..-|.+++++|+|++|...|+..++-..
T Consensus 76 ---~~~~~~~fEKAYc~Yrlnk~Dealk~~~~-~-------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 76 ---LVINSFFFEKAYCEYRLNKLDEALKTLKG-L-------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred ---hhcchhhHHHHHHHHHcccHHHHHHHHhc-c-------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 01112226789999999999999998872 1 1221 23566678999999999999999987743110
Q ss_pred -----------------------hhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc---CCC------h
Q 006812 281 -----------------------KGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW---GLS------S 328 (630)
Q Consensus 281 -----------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~------~ 328 (630)
+.........-..++|.+.++...|+|.+|++.+++|+++.+.. ++. .
T Consensus 142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~ 221 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEE 221 (652)
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence 11111122345678899999999999999999999998886542 111 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHH-HHH--------HHHHHHHHH
Q 006812 329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD-AKR--------CLEIACGIL 399 (630)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A~~--------~~~~a~~~~ 399 (630)
....+...++.++..+|+..+|...|...+...+.+.+..+.+-+++..+-....-++. ++. ..+..+..+
T Consensus 222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 34556778999999999999999999999998888877777777777544333322221 111 111111111
Q ss_pred HhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHH-HHHHHHHcCChhhHHHHHHHH
Q 006812 400 DKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSAR-IGWLLLLTGKVPQAIPYLESA 478 (630)
Q Consensus 400 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~a 478 (630)
. +.....++.+.+.+.+..+.-+.+.+.. ....+. .|...+-.. ..........+.+|.+++...
T Consensus 302 s------~~qk~~i~~N~~lL~l~tnk~~q~r~~~-------a~lp~~-~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 302 S------KKQKQAIYRNNALLALFTNKMDQVRELS-------ASLPGM-SPESLFPILLQEATKVREKKHKKAIELLLQF 367 (652)
T ss_pred H------HHHHHHHHHHHHHHHHHhhhHHHHHHHH-------HhCCcc-CchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1 1123345555666555555555544332 233222 222111111 222222222577777777766
Q ss_pred HHHHHHhcCCCCccH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhcCCHHHH
Q 006812 479 AERLKESFGPKHFGV-GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP--HHADSIEACQNLSKAYSSMGSYTLA 555 (630)
Q Consensus 479 l~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A 555 (630)
.+ .+|.. ..+...++.+...+|+++.|++.+...+..+...+.. ..|. +-..+-..|...++.+-|
T Consensus 368 ~~--------~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~---~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 368 AD--------GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG---TVGAIVALYYKIKDNDSA 436 (652)
T ss_pred hc--------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh---HHHHHHHHHHhccCCccH
Confidence 55 45554 6677888999999999999999999666444333221 3343 334456677888888889
Q ss_pred HHHHHHHHHHHHHcCCC----------------chhHHHHHHHHHHHHHHHh
Q 006812 556 IEFQQRAIDAWESHGPS----------------AQDELREARRLLEQLKIKA 591 (630)
Q Consensus 556 ~~~~~~al~~~~~~~~~----------------~~~~~~~A~~~~~~~~~~~ 591 (630)
...+.+|+.-+...... ..|.-++|..+++++.+..
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 99999999887763322 3477888999999887743
No 84
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=1.1e-11 Score=117.93 Aligned_cols=312 Identities=14% Similarity=-0.003 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
..+..-+..+.+.+.++-|...|..+++.+... -..+...+..-...|..++-..++++++...++.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k--------~slWlra~~~ek~hgt~Esl~Allqkav~~~pka----- 583 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCK--------KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA----- 583 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccch--------hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc-----
Confidence 345556677777888888888888888665332 3556667777777888999999999999876532
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET 367 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 367 (630)
-..+...+..+...|+...|...+.++.+. .|..-..+..-..+.....+++.|..++.++....+.
T Consensus 584 ---e~lwlM~ake~w~agdv~~ar~il~~af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~sgT---- 650 (913)
T KOG0495|consen 584 ---EILWLMYAKEKWKAGDVPAARVILDQAFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT---- 650 (913)
T ss_pred ---hhHHHHHHHHHHhcCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc----
Confidence 244556688888899999999999988876 5666777777788888999999999999998874332
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
..+|+.-+.+...+++.++|+++++++++.+ |+....|..+|+++..+++.+.|.+.|...+..++..
T Consensus 651 -eRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--- 718 (913)
T KOG0495|consen 651 -ERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--- 718 (913)
T ss_pred -chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC---
Confidence 4578888888899999999999999999987 6777999999999999999999999998877643222
Q ss_pred CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 527 (630)
.-.|..++.+-.+.|+.-.|...++++.- .+|.....|.....+-.+.|+.+.|.....+|++-+...
T Consensus 719 ----ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 719 ----IPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred ----chHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 34789999999999999999999999875 568888888888888899999999999998888654321
Q ss_pred c----------C---------------CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 528 L----------G---------------PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 528 ~----------~---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
. . .++| .++..+|.++....++++|.++|.+++++...+|+.
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~dp---hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDP---HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 0 0 1112 467778999999999999999999999987777764
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-12 Score=117.82 Aligned_cols=280 Identities=14% Similarity=0.069 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (630)
...+..+|.+++..|++.+|+..|+++.- -+|......-..|.++...|++++-..+....+.+...
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--------~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~----- 298 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLC--------ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY----- 298 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhh--------CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-----
Confidence 35667899999999999999999999873 34666777777888999999999888777776665432
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
.+.-++.-+...+...++..|+.+-+++++. ++....++...|.++...|+.++|+-.|+.+....+
T Consensus 299 ---ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap---- 365 (564)
T KOG1174|consen 299 ---TASHWFVHAQLLYDEKKFERALNFVEKCIDS------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP---- 365 (564)
T ss_pred ---chhhhhhhhhhhhhhhhHHHHHHHHHHHhcc------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcch----
Confidence 1233455577888899999999999998886 777888999999999999999999999999988543
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHHHHhC
Q 006812 367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEIS-MQYES-MNEFETAISLLKRTLALLEKL 444 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~ 444 (630)
....+|..|..+|...|++.+|....+.++..+ +..+.++..+| .++.. -.--++|.+++++++.+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~---- 433 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI---- 433 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc----
Confidence 335689999999999999999999999888877 45667777775 44433 33457899999999885
Q ss_pred CCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 445 PQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
. +....+-..++.++...|++..++.++++.+..+ ++ ......||.++...+.+++|.++|..|+.
T Consensus 434 -~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-- 499 (564)
T KOG1174|consen 434 -N--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR-- 499 (564)
T ss_pred -C--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 1 2224466889999999999999999999999843 22 23677899999999999999999999998
Q ss_pred HHhcCCCCHHHHHHHHHHHH
Q 006812 525 DVSLGPHHADSIEACQNLSK 544 (630)
Q Consensus 525 ~~~~~~~~~~~~~~~~~la~ 544 (630)
.+|..-.++..+-.
T Consensus 500 ------~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 500 ------QDPKSKRTLRGLRL 513 (564)
T ss_pred ------cCccchHHHHHHHH
Confidence 34555455544433
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=2.9e-14 Score=133.76 Aligned_cols=270 Identities=12% Similarity=0.084 Sum_probs=199.8
Q ss_pred HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812 161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI 240 (630)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (630)
+..|..+++.|+..+|.-.|+.|+.- .|.-+.+|..||.+....++-..|+..+++|+++.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq----------------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--- 349 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ----------------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD--- 349 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh----------------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---
Confidence 45889999999999999999999887 56667899999999999999999999999999654
Q ss_pred hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC--CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 006812 241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG--HNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQ 318 (630)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 318 (630)
|....++..||..|...|.-.+|..++.+-+.......- ........ ...........+..-.+.|-
T Consensus 350 -----P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~---~~~~s~~~~~~l~~i~~~fL--- 418 (579)
T KOG1125|consen 350 -----PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF---ENTKSFLDSSHLAHIQELFL--- 418 (579)
T ss_pred -----CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc---cCCcCCCCHHHHHHHHHHHH---
Confidence 445789999999999999999999999988764422100 00000000 00000000001111112222
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812 319 KVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI 398 (630)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 398 (630)
+.....+. .....+...||.+|...|+|++|+++|+.++...+.+ ...|+.||-.+..-.+.++|+..|.+|+++
T Consensus 419 eaa~~~~~-~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd----~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 419 EAARQLPT-KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND----YLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred HHHHhCCC-CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch----HHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 22222221 2457788899999999999999999999999965544 569999999999999999999999999998
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC---chhHHHHHHHHHHHHcCChhhHHH
Q 006812 399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH---SEGSVSARIGWLLLLTGKVPQAIP 473 (630)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~ 473 (630)
. |...++.++||..++..|.|++|.++|-.|+.+.++..+... +...+|..|=.++...++.+-+..
T Consensus 494 q--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 494 Q--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred C--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 7 788899999999999999999999999999999877433221 122466666566666676664443
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=3.4e-12 Score=112.36 Aligned_cols=424 Identities=14% Similarity=0.124 Sum_probs=260.9
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHH----
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKAN---- 184 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---- 184 (630)
.+....-..+|.|+++.| ||++|+..|+-+... ++. .+....+++.+++.+|.|.+|...-.++-
T Consensus 54 EEE~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~------~~~----~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL 122 (557)
T KOG3785|consen 54 EEEDSLQLWIAHCYFHLG-DYEEALNVYTFLMNK------DDA----PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPL 122 (557)
T ss_pred hhhHHHHHHHHHHHHhhc-cHHHHHHHHHHHhcc------CCC----CcccchhHHHHHHHHHHHHHHHHHHhhCCCChH
Confidence 344456677999999999 999999999876541 121 23455679999999999999998876652
Q ss_pred ------HHHhHhhhcC----CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 006812 185 ------RMLGRLEEEG----LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRD 254 (630)
Q Consensus 185 ------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 254 (630)
.+..++.++. .+.+..| ..+-...|+.+++..-.|.+|++.|.+++ .++|.....-..
T Consensus 123 ~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL--------~dn~ey~alNVy 190 (557)
T KOG3785|consen 123 CIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVL--------QDNPEYIALNVY 190 (557)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------hcChhhhhhHHH
Confidence 1122222211 0000001 11223467778888888999999998887 566766777788
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc--ccHHHHHH---------HHHHHHHHHHH
Q 006812 255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL--EEHQKALE---------QNELSQKVLKT 323 (630)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~---------~~~~a~~~~~~ 323 (630)
++.||.+..-|+-+.+.+.--+... |+...+.+..+...++. |+..++.. .|..+..+++.
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~--------pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQF--------PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhC--------CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 9999999999998887766555432 22223333333333332 22211110 01111111111
Q ss_pred ------cCC---------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH
Q 006812 324 ------WGL---------SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA 388 (630)
Q Consensus 324 ------~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 388 (630)
.|. -...+.+..++...|..+++..+|..+.+. ..|..+.-|...|.++...|+--..
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-------l~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-------LDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-------cCCCChHHHHHHHHHHHHhhhhcCc
Confidence 000 022456778889999999999999888765 3444455677778888888877777
Q ss_pred HHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCC
Q 006812 389 KRCLEIACGILDKKETIS-PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGK 467 (630)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 467 (630)
.+.+..|.+.+.-.++.. .-+.......++.+++...++++.+.++...-..+-. +.....+++.++...|+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-------dD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-------DDDFNLNLAQAKLATGN 408 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cchhhhHHHHHHHHhcC
Confidence 777766666554322111 0122233455677777788899998887765443321 11356899999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006812 468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS 547 (630)
Q Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 547 (630)
+.+|.+.|-+.-. ++-.+.......|+.||...++++-|.+++-+.- ...+....+..+|....
T Consensus 409 y~eaEelf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---------t~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 409 YVEAEELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---------TPSERFSLLQLIANDCY 472 (557)
T ss_pred hHHHHHHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---------CchhHHHHHHHHHHHHH
Confidence 9999998876543 2323334456689999999999999988876541 22233345666777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCCC---chhHHHHHHHHHHHHHHHhcCCCCC
Q 006812 548 SMGSYTLAIEFQQRAIDAWESHGPS---AQDELREARRLLEQLKIKASGASIN 597 (630)
Q Consensus 548 ~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~ 597 (630)
+.+++--|.+.|. ..+.+.|. =.|+.....-+|.++......+-+.
T Consensus 473 k~~eFyyaaKAFd----~lE~lDP~pEnWeGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 473 KANEFYYAAKAFD----ELEILDPTPENWEGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred HHHHHHHHHHhhh----HHHccCCCccccCCccchHHHHHHHHHcCCCCCCch
Confidence 7777765554443 34444442 1233334456666666555544333
No 88
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1e-13 Score=124.41 Aligned_cols=300 Identities=15% Similarity=0.100 Sum_probs=209.1
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.+.-....|..++...+|.+|+..|..|+++ .|..+..|.+.+.++...|+|++|.-..++.++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----------------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----------------CPDNASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----------------CccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 4444566788888999999999999999988 233356777888899999999999988888775
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE 315 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (630)
+. +.........+.++...++..+|...++..- ++ ++...+.
T Consensus 112 ~k--------d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~----------------~~--------------~~anal~ 153 (486)
T KOG0550|consen 112 LK--------DGFSKGQLREGQCHLALSDLIEAEEKLKSKQ----------------AY--------------KAANALP 153 (486)
T ss_pred cC--------CCccccccchhhhhhhhHHHHHHHHHhhhhh----------------hh--------------HHhhhhh
Confidence 43 2224456667777777777777776665110 00 0111111
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812 316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395 (630)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 395 (630)
....+.......|........-+.++...|++++|...--..++.... ...++...|.++...++.+.|+..|+++
T Consensus 154 ~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~----n~~al~vrg~~~yy~~~~~ka~~hf~qa 229 (486)
T KOG0550|consen 154 TLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT----NAEALYVRGLCLYYNDNADKAINHFQQA 229 (486)
T ss_pred hhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc----hhHHHHhcccccccccchHHHHHHHhhh
Confidence 111112222222444445555566677777777777666665553322 2446666677777777777777777777
Q ss_pred HHHHHhhcC----CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhH
Q 006812 396 CGILDKKET----ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQA 471 (630)
Q Consensus 396 ~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 471 (630)
+.+...... ...+.....+..-|.-.++.|++.+|.+.|.+++.+.+.. ..+.+..|.+.+.+...+|+..+|
T Consensus 230 l~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v~~rLgrl~ea 306 (486)
T KOG0550|consen 230 LRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALVNIRLGRLREA 306 (486)
T ss_pred hccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhhhcccCCchhh
Confidence 665432110 0113455677778888999999999999999999984432 224467789999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 472 IPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 472 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
+.-.+.++.+ ++....++...|.|+..+++|++|.+.|+++.+.-
T Consensus 307 isdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 307 ISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999984 47788899999999999999999999999999864
No 89
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.5e-10 Score=106.20 Aligned_cols=416 Identities=12% Similarity=0.038 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
...|...|.--..++ ++..|...|++||..... ....+...+.+-++......|..++++|+.+.
T Consensus 73 ~~~WikYaqwEesq~-e~~RARSv~ERALdvd~r----------~itLWlkYae~Emknk~vNhARNv~dRAvt~l---- 137 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQK-EIQRARSVFERALDVDYR----------NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---- 137 (677)
T ss_pred HHHHHHHHHHHHhHH-HHHHHHHHHHHHHhcccc----------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc----
Confidence 356777776666676 888888888888865422 23356678888889999999999999999984
Q ss_pred hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 006812 192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPF 271 (630)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 271 (630)
|..-..++....+-..+|+..-|...|++-++..+. ..++......-...+..+.|...
T Consensus 138 ------------PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~---------eqaW~sfI~fElRykeieraR~I 196 (677)
T KOG1915|consen 138 ------------PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD---------EQAWLSFIKFELRYKEIERARSI 196 (677)
T ss_pred ------------chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHhhHHHHHHHH
Confidence 344466777777777889999999999987754321 24566666666777788888888
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 006812 272 GLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI 351 (630)
Q Consensus 272 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 351 (630)
|++-+-. ||.+ ..+..-+..-...|+..-|...|+.|++.+. ++..........|..-..+..++.|.
T Consensus 197 YerfV~~--------HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 197 YERFVLV--------HPKV-SNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred HHHHhee--------cccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876643 3332 3455667777788888888888888777643 34444455556666666777788887
Q ss_pred HHHHHHHHHhhhc----------------------------------------chHHHHHHHHHHHHHHhhccHHHHHHH
Q 006812 352 NTLKGVVRQTEKE----------------------------------------SETRALVFISMGKALCNQEKFADAKRC 391 (630)
Q Consensus 352 ~~~~~~l~~~~~~----------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~ 391 (630)
.+|+-++...+++ ++..-.+|...-.+-...|+.+.-.+.
T Consensus 265 ~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~ 344 (677)
T KOG1915|consen 265 FIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRET 344 (677)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777655432 111123455555566667888888888
Q ss_pred HHHHHHHHHhhcCC-CcHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChh
Q 006812 392 LEIACGILDKKETI-SPEEVADAYSEISMQ-YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVP 469 (630)
Q Consensus 392 ~~~a~~~~~~~~~~-~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 469 (630)
|++|+.-....... ........|.+.+.. -....+.+.+.+.|+.++++.+.. ...-+.+|...|....++.+..
T Consensus 345 yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk---kFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 345 YERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK---KFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHcccH
Confidence 88887643211000 001122233333321 234678899999999999964321 2223667888888889999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812 470 QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM 549 (630)
Q Consensus 470 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 549 (630)
.|...+-.|+... |. .........+-.++++++....+|++.++ -.|+...++...|.+-..+
T Consensus 422 ~ARkiLG~AIG~c--------PK-~KlFk~YIelElqL~efDRcRkLYEkfle--------~~Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 422 GARKILGNAIGKC--------PK-DKLFKGYIELELQLREFDRCRKLYEKFLE--------FSPENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHhccC--------Cc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cChHhhHHHHHHHHHHHHh
Confidence 9999999888632 22 12334445566778899999999999988 6688999999999999999
Q ss_pred CCHHHHHHHHHHHHHH---------HHHcC--CCchhHHHHHHHHHHHHHHHhcCCC
Q 006812 550 GSYTLAIEFQQRAIDA---------WESHG--PSAQDELREARRLLEQLKIKASGAS 595 (630)
Q Consensus 550 g~~~~A~~~~~~al~~---------~~~~~--~~~~~~~~~A~~~~~~~~~~~~~~~ 595 (630)
|+.+.|...|+-|+.- ++.+- .-..+.+++|+.+|+++..+..-..
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 9999999999999842 22211 1256889999999999988865443
No 90
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=7.1e-10 Score=101.87 Aligned_cols=433 Identities=12% Similarity=0.050 Sum_probs=266.6
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
.|......|+..+..-.... ....|..++.+|+.+.+.. -..++.....-..+|+..-|.+.|++=+..
T Consensus 102 vd~r~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRV----------dqlWyKY~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 102 VDYRNITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRV----------DQLWYKYIYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred cccccchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchH----------HHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 34455567787887777776 8888999999999887553 334444555555677777777777765543
Q ss_pred HhH----------------------hhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Q 006812 187 LGR----------------------LEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEED 244 (630)
Q Consensus 187 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (630)
-.. +...- --. +|. ...+...+..-.+.|+..-|...|++|++.. .+
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerf-V~~----HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~-----~~ 239 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERF-VLV----HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFL-----GD 239 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-hee----ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----hh
Confidence 100 00000 000 111 1233444555555566666666666665543 22
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHH
Q 006812 245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE---HQKALEQNELSQKVL 321 (630)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~ 321 (630)
+......+...|..-..+..++.|.-+|+-|++..++ +.. -..+......-.+-|+ .+.++-.= +-.+.-
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk----~ra--eeL~k~~~~fEKqfGd~~gIEd~Iv~K-Rk~qYE 312 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK----GRA--EELYKKYTAFEKQFGDKEGIEDAIVGK-RKFQYE 312 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----ccH--HHHHHHHHHHHHHhcchhhhHHHHhhh-hhhHHH
Confidence 2333344444555555555666666666666554443 111 0111111111112222 22222111 111112
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH---HHHHHHHHHHH---HhhccHHHHHHHHHHH
Q 006812 322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR---ALVFISMGKAL---CNQEKFADAKRCLEIA 395 (630)
Q Consensus 322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~~~~~la~~~---~~~~~~~~A~~~~~~a 395 (630)
.....+|..-.+++..-.+-...|+.+.-.+.|++++...+...... -.+|..+-.++ ....+.+.+.+.|+.+
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22334566667777777888888999999999999998665533221 11222222222 3467888999999999
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHH
Q 006812 396 CGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYL 475 (630)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (630)
+++..... -..+..|...|....++.+...|.+.+-.|+..++ ...++-....+-.++++++....+|
T Consensus 393 l~lIPHkk----FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP--------K~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 393 LDLIPHKK----FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP--------KDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HhhcCccc----chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC--------chhHHHHHHHHHHHHhhHHHHHHHH
Confidence 99775432 46788999999999999999999999999887533 2346666677788889999999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 006812 476 ESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA 555 (630)
Q Consensus 476 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 555 (630)
++-++ -.|....++...|.+-..+|+.+.|...|+-|+.--. -+.|.+ .+-.....-...|.+++|
T Consensus 461 Ekfle--------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmpel--lwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 461 EKFLE--------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA----LDMPEL--LWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHHh--------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccHHH--HHHHhhhhhhhcchHHHH
Confidence 99988 4577888999999999999999999999998876211 133433 333445556778999999
Q ss_pred HHHHHHHHHHHH------------Hc-CCC-----------chhHHHHHHHHHHHHHHHhcCC
Q 006812 556 IEFQQRAIDAWE------------SH-GPS-----------AQDELREARRLLEQLKIKASGA 594 (630)
Q Consensus 556 ~~~~~~al~~~~------------~~-~~~-----------~~~~~~~A~~~~~~~~~~~~~~ 594 (630)
..+|++.++.-+ .. ... .......|+.+|+.+.......
T Consensus 527 R~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 527 RALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 999999885321 10 111 1236778888888876554444
No 91
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=5.1e-09 Score=96.64 Aligned_cols=424 Identities=13% Similarity=0.082 Sum_probs=270.8
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhcc-ChHHHHHHHHHHHHHHh
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFK-RFSDSLGYLSKANRMLG 188 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~ 188 (630)
-.+...+.+|..++.-.++++.|...+++|..+.... +.-. .....+...++.+|.... .+..|...+.+++++.+
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~i--p~fy-dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSI--PSFY-DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ 120 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccc--ccHH-hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence 3557788899888776669999999999999988766 3221 134456677899998877 89999999999999954
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------HhccchHHHHH
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL------------------ILEEDSRELGV 250 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~~~~~ 250 (630)
.. .-.--...+.|+.++.-..++..|++.+.-.-+-... ....+..++..
T Consensus 121 ~~------------p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ 188 (629)
T KOG2300|consen 121 SV------------PYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEK 188 (629)
T ss_pred CC------------chhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 43 1233466788999999999999988774321111000 00112222223
Q ss_pred HHHHHHHHHHHh-cCH--HHHHHHHHHHHHH---------------------H------------hhhcCCCCHHHH---
Q 006812 251 ANRDLAEAFVAV-LNF--KEALPFGLKALEI---------------------H------------KKGLGHNSVEVA--- 291 (630)
Q Consensus 251 ~~~~la~~~~~~-g~~--~~A~~~~~~al~~---------------------~------------~~~~~~~~~~~~--- 291 (630)
+....|.+.... ++. .+.++.|--.+.+ . +++++...+...
T Consensus 189 ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wl 268 (629)
T KOG2300|consen 189 LLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWL 268 (629)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhc
Confidence 333333332211 110 1122221111110 0 011122222111
Q ss_pred -----HHHHHHHHH--HhccccHHHHHHHHHHHHHHHHHcCCChhHH--------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 292 -----HDRRLLGVI--YSGLEEHQKALEQNELSQKVLKTWGLSSELL--------RAEIDAANMQIALGKFEEAINTLKG 356 (630)
Q Consensus 292 -----~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~ 356 (630)
.++..+-.+ -...|-+++|.++-++++....+....+... ..+-.+..+-.-.|++.+|++....
T Consensus 269 pkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~d 348 (629)
T KOG2300|consen 269 PKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVD 348 (629)
T ss_pred cHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 111111111 1235778888888888888776665544222 2333556667788999999999988
Q ss_pred HHHHhhhcch------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812 357 VVRQTEKESE------TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA 430 (630)
Q Consensus 357 ~l~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 430 (630)
+.+.....+. ..+.....+|......+.++.|+..|..+.+..... .-.+.+-.++|..|...|+-+.-
T Consensus 349 m~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~ 423 (629)
T KOG2300|consen 349 MKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDL 423 (629)
T ss_pred HHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHH
Confidence 8877655432 235567778888888899999999999998887554 23556667899999998875543
Q ss_pred HHHHHHHHHHHHhCCCCCC----chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 006812 431 ISLLKRTLALLEKLPQAQH----SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE 506 (630)
Q Consensus 431 ~~~~~~al~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 506 (630)
.+. ++.......... ....+++..|...+.++++.||...+.+.+++.... +...-.+..+..||.+...
T Consensus 424 y~~----ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~ls 497 (629)
T KOG2300|consen 424 YKA----LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLS 497 (629)
T ss_pred HHH----HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHH
Confidence 333 332111100000 113456677888889999999999999999976332 2344556678889999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Q 006812 507 LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS--YTLAIEFQQR 561 (630)
Q Consensus 507 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~ 561 (630)
.|+..++....+-++.+..+.. +.+-.......+-.+|...|+ .+...+.|.+
T Consensus 498 lgn~~es~nmvrpamqlAkKi~--Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 498 LGNTVESRNMVRPAMQLAKKIP--DIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hcchHHHHhccchHHHHHhcCC--CchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 9999999999999999988763 556555566667788888888 6666666665
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.50 E-value=4.9e-12 Score=114.96 Aligned_cols=181 Identities=17% Similarity=0.077 Sum_probs=145.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812 203 KPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282 (630)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (630)
.+.....++.+|..+...|++++|+..|++++... ++++....++..+|.++...|++++|+..++++++..+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-- 101 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-- 101 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--
Confidence 34556788899999999999999999999988654 45566667899999999999999999999999998765
Q ss_pred cCCCCHHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHHHHHcCCChhHH--------------HHHHHHHHH
Q 006812 283 LGHNSVEVAHDRRLLGVIYSGL--------EEHQKALEQNELSQKVLKTWGLSSELL--------------RAEIDAANM 340 (630)
Q Consensus 283 ~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~la~~ 340 (630)
+++....+++.+|.++... |++++|+..+++++.... ..+... .....+|.+
T Consensus 102 ---~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 102 ---NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP---NSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred ---CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788889998876 889999999998776521 111111 122467899
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812 341 QIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397 (630)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 397 (630)
|...|++.+|+..+++++...+.. +....++..+|.++...|++++|..+++....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDT-PATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999987654 33467999999999999999999998876543
No 93
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.48 E-value=2.5e-11 Score=112.39 Aligned_cols=224 Identities=19% Similarity=0.197 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC
Q 006812 205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG 284 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (630)
..+..|..-|.+|...|++++|...|.++.++..+. .+....+.++...+.+|... ++++|+.+|+++++++....
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G- 108 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG- 108 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence 334566678888999999999999999999998875 55566788888888888776 99999999999999998642
Q ss_pred CCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 285 HNSVEVAHDRRLLGVIYSGL-EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
.....+.++..+|.+|... |++++|+++|++|..++...+.......++..+|.++...|+|++|++.|+++......
T Consensus 109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 3446788999999999999 99999999999999999998876778889999999999999999999999999876533
Q ss_pred cc---hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q 006812 364 ES---ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES--MNEFETAISLLKR 436 (630)
Q Consensus 364 ~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~ 436 (630)
.+ ......+...+.++...|++..|...+++.......- ...........+-..+.. ...+++|+.-|..
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 22 2334456777889999999999999888865443211 112334455555555543 2345555544443
No 94
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.46 E-value=1.3e-11 Score=114.24 Aligned_cols=227 Identities=16% Similarity=0.101 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--h
Q 006812 289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--E 366 (630)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~ 366 (630)
..+..|...|..|...|++++|.+.|.++..+....+........+...+.+|... ++++|+.++++++.++.... .
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 44556666788889999999999999999999888777788888888888888666 99999999999999886653 4
Q ss_pred HHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812 367 TRALVFISMGKALCNQ-EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 445 (630)
..+.++..+|.+|... |++++|+++|++|.+++.... .+.....++..+|.++...|+|++|++.|++.........
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 5588999999999999 999999999999999998765 3346678889999999999999999999999877432221
Q ss_pred CCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChhHHHHHHHHHH
Q 006812 446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE--LDRPQSAAQVFAFAK 521 (630)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al 521 (630)
.........+...+.+++..|++..|...+++........ .+.........|-.++.. ...+++|+.-|....
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1111112345677889999999999999988876632111 233445556666666653 234566666665543
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.46 E-value=7.9e-12 Score=113.58 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
.+..++.+|..+...|++++|+..+++++.... ..+....++..+|.++...|++++|+..++++++..+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---- 102 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-----FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---- 102 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC----
Confidence 356788888888899999999998888776542 22445578899999999999999999999999986432
Q ss_pred CCch-hHHHHHHHHHHHHc--------CChhhHHHHHHHHHHHHHHhcCCCCccHHHH--------------HHHHHHHH
Q 006812 448 QHSE-GSVSARIGWLLLLT--------GKVPQAIPYLESAAERLKESFGPKHFGVGYI--------------YNNLGAAY 504 (630)
Q Consensus 448 ~~~~-~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~l~~~~ 504 (630)
++. ..+++.+|.++... |++++|+..+++++... ++++....+ ...+|.+|
T Consensus 103 -~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 103 -HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred -CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 34678889988876 78999999999998742 232222212 24678999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 505 LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 505 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
...|++.+|+..|++++... +++|....++..+|.++...|++++|..+++....
T Consensus 177 ~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999854 24567778999999999999999999998887654
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=7.1e-10 Score=109.13 Aligned_cols=364 Identities=15% Similarity=0.043 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
...++....++...| ++++|++.+++..... ++....+...|.++..+|++++|...|...++.
T Consensus 4 SE~lLY~~~il~e~g-~~~~AL~~L~~~~~~I----------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----- 67 (517)
T PF12569_consen 4 SELLLYKNSILEEAG-DYEEALEHLEKNEKQI----------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR----- 67 (517)
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHhhhhhC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----
Confidence 345566777888888 9999999997744332 345667788999999999999999999999887
Q ss_pred hcCCCCCCccchhhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812 192 EEGLGGSVEDIKPIMHAVHLELANVKTAMG-----RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFK 266 (630)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (630)
.|.....+..+..+..... +.+.-...|++.....+. +.+-..+...+..-..|.
T Consensus 68 -----------NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~---------s~~~~rl~L~~~~g~~F~ 127 (517)
T PF12569_consen 68 -----------NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR---------SDAPRRLPLDFLEGDEFK 127 (517)
T ss_pred -----------CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc---------ccchhHhhcccCCHHHHH
Confidence 2222344445555553322 334445555543322211 111111222222212233
Q ss_pred HHHH-HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC----------CC-hhHHHHH
Q 006812 267 EALP-FGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG----------LS-SELLRAE 334 (630)
Q Consensus 267 ~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~-~~~~~~~ 334 (630)
.... ++...+. ..- ..+..++-.+|....+..-....+......+...+ .. ....+++
T Consensus 128 ~~~~~yl~~~l~-------Kgv---PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~ 197 (517)
T PF12569_consen 128 ERLDEYLRPQLR-------KGV---PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTL 197 (517)
T ss_pred HHHHHHHHHHHh-------cCC---chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHH
Confidence 2222 2222221 122 23344555555543333322233332222222111 11 2245788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006812 335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAY 414 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (630)
+.+|..|...|++++|+.+++++++. .|.....|...|.++...|++.+|..+++.|..+... .-.+-
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~--------DRyiN 265 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA--------DRYIN 265 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh--------hHHHH
Confidence 89999999999999999999999994 4555679999999999999999999999998876532 22344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch------hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812 415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE------GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488 (630)
Q Consensus 415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (630)
...+..+.+.|+.++|.+.+..-. +.......+ .+.....|.+|.+.|++..|+..|..+.+++......
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ft----r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFT----REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED 341 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhc----CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 556778889999999987765432 221111111 1222567999999999999999999999998876432
Q ss_pred CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 006812 489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS 551 (630)
Q Consensus 489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 551 (630)
.- + .+. -..+.|-+ ..|-..+.....+. .||....+......+|..+-+
T Consensus 342 Qf-D---FH~----Yc~RK~t~----r~Y~~~L~~ed~l~--~~~~y~raa~~ai~iYl~l~d 390 (517)
T PF12569_consen 342 QF-D---FHS----YCLRKMTL----RAYVDMLRWEDKLR--SHPFYRRAAKGAIRIYLELHD 390 (517)
T ss_pred cc-c---HHH----HHHhhccH----HHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHhc
Confidence 21 1 110 11222222 23333444433333 567777777777777766654
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=6.7e-10 Score=109.30 Aligned_cols=292 Identities=11% Similarity=0.067 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 329 (630)
+++.....++...|++++|++++++.... -.+....+...|.++..+|++++|...|...++. +|+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r------NPd 70 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR------NPD 70 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCC
Confidence 45566678889999999999998764432 2344566778899999999999999999877765 666
Q ss_pred HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhhhcch----------------------------HHHHHHHHHH
Q 006812 330 LLRAEIDAANMQIALG-----KFEEAINTLKGVVRQTEKESE----------------------------TRALVFISMG 376 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~~~~~~----------------------------~~~~~~~~la 376 (630)
....+..+..+..... ..+.-..+|++.....+.... .++..+.++-
T Consensus 71 n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk 150 (517)
T PF12569_consen 71 NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLK 150 (517)
T ss_pred cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 6766766666653222 455566667665554433110 0112333343
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHhhc---------CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 377 KALCNQEKFADAKRCLEIACGILDKKE---------TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
.+|....+..-....+........... ...+.....+++.+|..|...|++++|+++++++++.
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------- 223 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------- 223 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------
Confidence 444433222222222332222221111 1122334678899999999999999999999999985
Q ss_pred CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 527 (630)
.+..+..+...|.++.+.|++.+|.+.++.|-.+ +...-.+-...+..+.+.|+.++|...+.....-..
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-- 293 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-- 293 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--
Confidence 2223678899999999999999999999999873 222233445667788899999999988766533110
Q ss_pred cCCCCHHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 528 LGPHHADSI---EACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 528 ~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
.+..+.... ......|.+|.+.|++..|+..|..+.+++..+..+
T Consensus 294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED 341 (517)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 011122222 233456999999999999999999999999997766
No 98
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=3.2e-09 Score=101.44 Aligned_cols=298 Identities=14% Similarity=0.073 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc---------------------------CCCCHHHH-------
Q 006812 246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL---------------------------GHNSVEVA------- 291 (630)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~------- 291 (630)
......+..||..|...|.+++|...|++++...-... +.+..+..
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 34577889999999999999999999999875221100 00000000
Q ss_pred --HHH---------------------HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 006812 292 --HDR---------------------RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE 348 (630)
Q Consensus 292 --~~~---------------------~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 348 (630)
..+ ..+-.+-...|+..+-+..|.+|++...-....-.....+..+|..|...|+.+
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 000 001122223566677777777776653322222334567788999999999999
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-----hcCCCcH-----HHHHHHHHHH
Q 006812 349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDK-----KETISPE-----EVADAYSEIS 418 (630)
Q Consensus 349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~-----~~~~~~~~la 418 (630)
.|..+|+++....-+.....+.+|...|..-....+++.|.++++.|..+-.. ..+..++ ....+|..++
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999998655556677889999999999999999999999988654322 1111111 2245666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 006812 419 MQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYN 498 (630)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 498 (630)
.+....|-++.-...|++.+++.- ....+..+.|..+....-++++.+.|++.+.++ ..|...+.|+
T Consensus 485 DleEs~gtfestk~vYdriidLri-------aTPqii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~ 551 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRI-------ATPQIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWN 551 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHH
Confidence 777788888888888888887621 123466788888888888999999999988865 3455554444
Q ss_pred H---HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812 499 N---LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEA-CQNLSKAYSSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 499 ~---l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al 563 (630)
. ....-+..-+.+.|..+|++|++. ..|..+.. +...|..-..-|--..|+..|++|.
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 222233345688899999999984 33666644 4445777777888889999998874
No 99
>PLN02789 farnesyltranstransferase
Probab=99.40 E-value=3e-10 Score=105.42 Aligned_cols=216 Identities=11% Similarity=0.049 Sum_probs=167.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812 293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG-KFEEAINTLKGVVRQTEKESETRALV 371 (630)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~ 371 (630)
++..+-.++...+.+++|+..+.+++.+ +|....++...+.++..+| ++++++..+.+++...+++ ..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn----yqa 108 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN----YQI 108 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc----hHH
Confidence 3333344455677889999999999987 8888999999999999998 6899999999999876555 447
Q ss_pred HHHHHHHHHhhccH--HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC
Q 006812 372 FISMGKALCNQEKF--ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH 449 (630)
Q Consensus 372 ~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 449 (630)
|...+.++...|+. ++++.++++++++. |....+|...+.++...|++++|++++.+++++ +.
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----d~-- 173 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-----DV-- 173 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----CC--
Confidence 88888888888874 67788888888765 566689999999999999999999999999986 22
Q ss_pred chhHHHHHHHHHHHHc---CCh----hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHH
Q 006812 450 SEGSVSARIGWLLLLT---GKV----PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFA 518 (630)
Q Consensus 450 ~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 518 (630)
....+|+..+.+.... |.+ ++++.+..+++.+ .|....+++.++.++.. .++..+|.+.+.
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 2345888888887766 333 4677777788873 46666688899999987 455677888887
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812 519 FAKDIMDVSLGPHHADSIEACQNLSKAYSSM 549 (630)
Q Consensus 519 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 549 (630)
+++. ..+....++..|+.+|...
T Consensus 246 ~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 246 EVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred Hhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 7665 3355557888899999753
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.6e-08 Score=91.63 Aligned_cols=302 Identities=14% Similarity=0.053 Sum_probs=205.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE 289 (630)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (630)
...-|..-...|+|.+|++...++-+ ..+.-..++..-+..-...|+++.|-.+..++-+... + .
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae--------~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~------~-~ 151 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAE--------HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG------D-D 151 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhh--------cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC------C-c
Confidence 33456666778999999998887542 2233355666778888999999999999988876422 1 2
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812 290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA 369 (630)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 369 (630)
........+.+....|+++.|..-..++++. .|....++.-...+|...|+|.+...+..+..+..--+++. .
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e-~ 224 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEM------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE-A 224 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH-H
Confidence 2344567788999999999999988877775 67777888888999999999999998888766533222222 1
Q ss_pred HHHHHHHHH--HHhhccHHHHH---HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812 370 LVFISMGKA--LCNQEKFADAK---RCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL 444 (630)
Q Consensus 370 ~~~~~la~~--~~~~~~~~~A~---~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 444 (630)
.-+-+.+.. +....+-..+. .+++..-... + ++| .....++.-+...|+.++|.+..+.+++-
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l-r----~~p---~l~~~~a~~li~l~~~~~A~~~i~~~Lk~---- 292 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL-R----NDP---ELVVAYAERLIRLGDHDEAQEIIEDALKR---- 292 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh-h----cCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence 122222211 11111211122 2222211111 1 112 34456777789999999999999998873
Q ss_pred CCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 445 PQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
...+ .....++ ...-+++..=++..++.+. .||+.+..+..||..+.+.+.|.+|..+|+.+++..
T Consensus 293 --~~D~--~L~~~~~--~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 293 --QWDP--RLCRLIP--RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred --ccCh--hHHHHHh--hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 1111 1111112 2345666666777777666 466666889999999999999999999999998843
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 525 DVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 525 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
| .+..+..+|.++.+.|+..+|.+.+++++.....
T Consensus 359 --------~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 359 --------P-SASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred --------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 2 2357889999999999999999999999955443
No 101
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=1.6e-08 Score=96.77 Aligned_cols=411 Identities=13% Similarity=0.070 Sum_probs=245.1
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhcc-------C------hHH
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFK-------R------FSD 175 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-------~------~~~ 175 (630)
...+..|..++..|.+.| .+++|...|+++++..... .+-.....+.+.+.-..+...++ + .+-
T Consensus 245 Dq~g~Lw~SLAdYYIr~g-~~ekarDvyeeai~~v~tv--rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSG-LFEKARDVYEEAIQTVMTV--RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred HHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhheeh--hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 456778999999999999 9999999999998765332 11100001111111111111111 1 111
Q ss_pred HHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 006812 176 SLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDL 255 (630)
Q Consensus 176 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 255 (630)
....|+..+....-.....+-..+ |..... .+-.+-...|+..+-+..|.+|+........ .-.....+..+
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn----~~nV~e--W~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQN----PHNVEE--WHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEF 393 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcC----CccHHH--HHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHH
Confidence 222233333221111110000000 011111 2334455677888888888888754432211 12336778899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-----HcCCC-hh
Q 006812 256 AEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK-----TWGLS-SE 329 (630)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~-~~ 329 (630)
|..|...|+.+.|...|+++....-. .-.+++.+|..-|..-....+++.|+...+.|..+-. ..... |.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 99999999999999999999874221 2336678888888888888999999998888765411 11111 22
Q ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhc
Q 006812 330 ------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE 403 (630)
Q Consensus 330 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 403 (630)
...++...++.....|-++.-...|++++++.--. +....+.|..+....-++++.+.|++.+.+++-
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT----Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-- 543 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT----PQIIINYAMFLEEHKYFEESFKAYERGISLFKW-- 543 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC--
Confidence 23445556777778888888888888888754333 336677788888888899999999998888742
Q ss_pred CCCcHHHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchh-HHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812 404 TISPEEVADAYSE---ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG-SVSARIGWLLLLTGKVPQAIPYLESAA 479 (630)
Q Consensus 404 ~~~~~~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 479 (630)
|.....|+. ...--...-+.+.|..+|++|++.++ +..+ .++...+.+-..-|--..|+..|++|-
T Consensus 544 ----p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 544 ----PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444433 33333334578899999999998432 1112 344556666666788888888888765
Q ss_pred HHHHHhcCCCCccHHHHHHHH--HHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 006812 480 ERLKESFGPKHFGVGYIYNNL--GAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIE 557 (630)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 557 (630)
.- .++......+++ ..+-...| ...-.+.|++|++.. .+......+...|..-.+.|..+.|..
T Consensus 614 ~~-------v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 614 SA-------VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred hc-------CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 41 222211111111 11111112 233456777777753 233445667777888888888888888
Q ss_pred HHHHHHH
Q 006812 558 FQQRAID 564 (630)
Q Consensus 558 ~~~~al~ 564 (630)
.|.-+-+
T Consensus 680 Iya~~sq 686 (835)
T KOG2047|consen 680 IYAHGSQ 686 (835)
T ss_pred HHHhhhh
Confidence 8776643
No 102
>PLN02789 farnesyltranstransferase
Probab=99.36 E-value=1.5e-09 Score=100.82 Aligned_cols=209 Identities=8% Similarity=-0.012 Sum_probs=163.8
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812 258 AFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE-EHQKALEQNELSQKVLKTWGLSSELLRAEID 336 (630)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 336 (630)
++...+++++|+..+.+++.+.+ ....+++..+.++..+| ++++++.++++++.. +|....++..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP--------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------npknyqaW~~ 111 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP--------GNYTVWHFRRLCLEALDADLEEELDFAEDVAED------NPKNYQIWHH 111 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc--------hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------CCcchHHhHH
Confidence 34456788999999999998644 44577888899999988 689999999998886 7778888999
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006812 337 AANMQIALGKF--EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAY 414 (630)
Q Consensus 337 la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (630)
.+.++...|+. ++++.++.++++..+++ ..+|...+.++...|++++++++++++++.. +....+|
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkN----y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------~~N~sAW 179 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKN----YHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------VRNNSAW 179 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------CCchhHH
Confidence 99999888874 78899999999866555 4589999999999999999999999998875 3455788
Q ss_pred HHHHHHHHHc---CCH----HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHH
Q 006812 415 SEISMQYESM---NEF----ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLK 483 (630)
Q Consensus 415 ~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 483 (630)
+..+.+.... |.+ ++++.+..+++.+. +. +..+|..++.++.. .++..+|.+.+.+++.
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-----P~--N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--- 249 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-----PR--NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--- 249 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhC-----CC--CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc---
Confidence 8888887765 333 46788888888762 22 23588888888877 4556778888877665
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHc
Q 006812 484 ESFGPKHFGVGYIYNNLGAAYLEL 507 (630)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~ 507 (630)
..+....++..|+.+|...
T Consensus 250 -----~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 250 -----KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred -----ccCCcHHHHHHHHHHHHhh
Confidence 3466667888899999763
No 103
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.34 E-value=8.7e-12 Score=90.45 Aligned_cols=78 Identities=36% Similarity=0.581 Sum_probs=71.8
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
||..+.++.++|.+|..+|++++|+.+|++++++ .+..++.++.++.++.++|.+|..+|++++|+++++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6788999999999999999999999999999999 77778888899999999999999999999999999999999864
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.7e-08 Score=87.42 Aligned_cols=216 Identities=11% Similarity=0.065 Sum_probs=150.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
+|+.||++...-.+. +|..-..+..+|.||+...+|..|..+|++.-.+ .|...
T Consensus 25 ry~DaI~~l~s~~Er----------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql----------------~P~~~ 78 (459)
T KOG4340|consen 25 RYADAIQLLGSELER----------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL----------------HPELE 78 (459)
T ss_pred hHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------ChHHH
Confidence 677777776553322 2333445678999999999999999999988776 44555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
...+.-+..+++.+.+.+|+....... .+......++..-+-+.+..+++..+..+.++. .+
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~--------D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p~--- 140 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLL--------DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------PS--- 140 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhc--------CCHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------cC---
Confidence 556667888899999999988766533 222333455555666777778887776655442 11
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch-
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE- 366 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~- 366 (630)
...+....+.|.+.++.|+++.|++-|+.|++. .--....-++++.++++.|+++.|+++..+.++..-+++|
T Consensus 141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqv------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQV------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred CCccchhccchheeeccccHHHHHHHHHHHHhh------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 133566778899999999999999999888776 2222334567888999999999999998888775533221
Q ss_pred ------------------------HHHHHHHHHHHHHHhhccHHHHHHHHH
Q 006812 367 ------------------------TRALVFISMGKALCNQEKFADAKRCLE 393 (630)
Q Consensus 367 ------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~ 393 (630)
....+++..+.++++.++++.|.+.+.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 123455566778888888888876554
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=3.3e-08 Score=97.21 Aligned_cols=337 Identities=15% Similarity=0.126 Sum_probs=210.8
Q ss_pred HHHHhhHHHhhccChHHHHHHHHH--------HHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812 159 CLQVMGSANYSFKRFSDSLGYLSK--------ANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHL 230 (630)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~--------al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (630)
.|.+++....+..+.+-|.-++-. |+.-..+..++ . -...+.+-..+|..++|+.+|
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e-----------~----eakvAvLAieLgMlEeA~~lY 823 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE-----------D----EAKVAVLAIELGMLEEALILY 823 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc-----------h----hhHHHHHHHHHhhHHHHHHHH
Confidence 456777777777777766655422 22221111110 1 114566677889999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHH
Q 006812 231 QKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKA 310 (630)
Q Consensus 231 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (630)
.++-. +-.|-..|...|.+++|.+..+.- +...+-.+|++.+..+...++.+.|
T Consensus 824 r~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 824 RQCKR----------------YDLLNKLYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHH----------------HHHHHHHHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHH
Confidence 88542 334556788888888887765431 3334567788999999999999999
Q ss_pred HHHHHHHH----HHHHHcCCChhHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 006812 311 LEQNELSQ----KVLKTWGLSSELL----------RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMG 376 (630)
Q Consensus 311 ~~~~~~a~----~~~~~~~~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 376 (630)
+++|+++- ++.+-+.+.|... ..+...|......|+.+.|+.+|..+- -|+.+.
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------------D~fs~V 945 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------------DYFSMV 945 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh------------hhhhhe
Confidence 99999753 3333333333322 344456777788888888888887743 466677
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHhCCCCCCc
Q 006812 377 KALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA------LLEKLPQAQHS 450 (630)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~ 450 (630)
.+.+-+|+.++|....++. ....+.+.+|+.|...|++.+|+.+|.+|-. ++++..-.+..
T Consensus 946 rI~C~qGk~~kAa~iA~es-------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES-------------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred eeEeeccCchHHHHHHHhc-------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777888888877665542 2224667889999999999999988876544 33322100000
Q ss_pred h-h------HHHHHHHHHHHHcC-ChhhHHHHHHH------------------HHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812 451 E-G------SVSARIGWLLLLTG-KVPQAIPYLES------------------AAERLKESFGPKHFGVGYIYNNLGAAY 504 (630)
Q Consensus 451 ~-~------~~~~~la~~~~~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~~l~~~~ 504 (630)
. . .-....+..|...| +.+.|..+|.+ ++++..+-+.+. ..+..+..-+..+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~--sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG--SDPKLLRRCADFF 1090 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC--CCHHHHHHHHHHH
Confidence 0 0 00112233444444 55555555543 233333323222 2344667778888
Q ss_pred HHcCChhHHHHHH------HHHHHHHHHh-----------cC------CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006812 505 LELDRPQSAAQVF------AFAKDIMDVS-----------LG------PHHADSIEACQNLSKAYSSMGSYTLAIEFQQR 561 (630)
Q Consensus 505 ~~~g~~~~A~~~~------~~al~~~~~~-----------~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 561 (630)
....+|++|..++ +.|+.++... .. ++......++..+|.++.++|.|..|.+-|.+
T Consensus 1091 ~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 8999999998765 4555554421 11 11223346888999999999999999999988
Q ss_pred HH
Q 006812 562 AI 563 (630)
Q Consensus 562 al 563 (630)
|=
T Consensus 1171 AG 1172 (1416)
T KOG3617|consen 1171 AG 1172 (1416)
T ss_pred hh
Confidence 73
No 106
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.3e-07 Score=85.02 Aligned_cols=426 Identities=14% Similarity=0.058 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHh-hccChHHHHHHHHHHHHHHhH
Q 006812 112 GLVGLKIALKLDQEG-GDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANY-SFKRFSDSLGYLSKANRMLGR 189 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~ 189 (630)
+.+++.++..+...+ -+..++|.+.+........ ....+.+...+|.+++ ...+++.|...+++|..+.+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is-------~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ 79 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQIS-------FLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS 79 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 455666676655554 2456677777665443221 2346677788887765 578899999999999999766
Q ss_pred hhhcCCCCCCccchhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHH
Q 006812 190 LEEEGLGGSVEDIKPIMHAVHLELANVKTAMG-RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEA 268 (630)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (630)
+..- ..........|+.+|.... .+..|...+++++++.+.. .......+..|+.++.-..++..|
T Consensus 80 ip~f---------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~----p~wsckllfQLaql~~idkD~~sA 146 (629)
T KOG2300|consen 80 IPSF---------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV----PYWSCKLLFQLAQLHIIDKDFPSA 146 (629)
T ss_pred cccH---------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHhhhccchhH
Confidence 5432 1234566778899998887 8889999999999887543 234467788899999999999888
Q ss_pred HHHHHHH------------------------------------HHHHhhhcCCC--CH---HHH-HHHHHHHH-HHhccc
Q 006812 269 LPFGLKA------------------------------------LEIHKKGLGHN--SV---EVA-HDRRLLGV-IYSGLE 305 (630)
Q Consensus 269 ~~~~~~a------------------------------------l~~~~~~~~~~--~~---~~~-~~~~~la~-~~~~~g 305 (630)
.+.+.-. +.....+.... ++ +.. ..|..+-. .|...|
T Consensus 147 ~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~g 226 (629)
T KOG2300|consen 147 LELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPG 226 (629)
T ss_pred HHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 8764211 01111110000 00 111 11122222 234456
Q ss_pred cHHHHHHHHHHHHHHHHHc------------CCChhH---------HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHhh
Q 006812 306 EHQKALEQNELSQKVLKTW------------GLSSEL---------LRAEIDAANM--QIALGKFEEAINTLKGVVRQTE 362 (630)
Q Consensus 306 ~~~~A~~~~~~a~~~~~~~------------~~~~~~---------~~~~~~la~~--~~~~g~~~~A~~~~~~~l~~~~ 362 (630)
+...+...+++..+-.... |.++.. ..++..+-.+ -...|-+++|.++-++++....
T Consensus 227 q~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~e 306 (629)
T KOG2300|consen 227 QVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTE 306 (629)
T ss_pred chhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 6665555555443333221 111111 1111111111 1245778899998888887654
Q ss_pred hcc--h--------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812 363 KES--E--------TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI--SPEEVADAYSEISMQYESMNEFETA 430 (630)
Q Consensus 363 ~~~--~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A 430 (630)
+.. + .....+..+..+-.-.|++.+|++....+.+.+....++ .....+.....+|.....-|.++.|
T Consensus 307 klkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enA 386 (629)
T KOG2300|consen 307 KLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENA 386 (629)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHH
Confidence 421 1 112344456677778899999999999988888765431 1223456777888888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC-------ccHHHHHHHHHHH
Q 006812 431 ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH-------FGVGYIYNNLGAA 503 (630)
Q Consensus 431 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~l~~~ 503 (630)
...|..|....... ...+.+-.++|..|...|+-+.-.+ +++. .++.+ ...+.+++..|..
T Consensus 387 e~hf~~a~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y~----~ld~----i~p~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 387 EFHFIEATKLTESI----DLQAFCNLNLAISYLRIGDAEDLYK----ALDL----IGPLNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred HHHHHHHHHhhhHH----HHHHHHHHhHHHHHHHhccHHHHHH----HHHh----cCCCCCCcchHHHHHHHHHHHHHHH
Confidence 99999998864332 1123445789999999887544333 3332 22221 1234566777888
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812 504 YLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP 571 (630)
Q Consensus 504 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 571 (630)
.+.++++.+|...+.+.+++... .+.+.-.+-.+..|+.+....|+..++.+...-+++..+++.+
T Consensus 455 af~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 88999999999999999997632 1122334456778899999999999999998888766555444
No 107
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.30 E-value=3.3e-09 Score=110.37 Aligned_cols=431 Identities=15% Similarity=0.114 Sum_probs=301.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHH
Q 006812 129 PEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHA 208 (630)
Q Consensus 129 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 208 (630)
.++|++++-+++......-++-.. ...+++.++......+++.+|...-++++++.+...+.. .|....
T Consensus 640 ~~dav~~~~~al~k~~~~~~~~~f---np~~f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~--------iPd~~K 708 (1236)
T KOG1839|consen 640 LDDAVKYATKALVKLVAVCGPYGF---NPAGFYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLD--------IPDTMK 708 (1236)
T ss_pred hHHHHHHHHHHHHHHHhhhccccc---CccccccCceEecCccccchhhhhhHhHHHHHHHHhccc--------cchhHH
Confidence 456777766666544333222222 223344457888899999999999999999988887766 556666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH
Q 006812 209 VHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV 288 (630)
Q Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 288 (630)
.+..++..++......+|+.+-.+.+.+.-...+..+|..+..+.+....-...| +-+..+...+++-..+..+.++.
T Consensus 709 s~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i 786 (1236)
T KOG1839|consen 709 SYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHI 786 (1236)
T ss_pred hccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHH
Confidence 6767776777777889999999988888777766666666554444443333333 67777777777777776666666
Q ss_pred HHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHH----HcCCChh---------------------------HHHHH
Q 006812 289 EVAHDRRLLGVIYSG---LEEHQKALEQNELSQKVLK----TWGLSSE---------------------------LLRAE 334 (630)
Q Consensus 289 ~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~----~~~~~~~---------------------------~~~~~ 334 (630)
..+.. ..+...+.. ..+...+..-.-++.+... ..+..++ .....
T Consensus 787 ~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~ 865 (1236)
T KOG1839|consen 787 QTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDV 865 (1236)
T ss_pred HHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhh
Confidence 55544 233333222 2333322222222221000 0000011 00000
Q ss_pred HHHHHHHHHcCCHHHHHH---HHHHHHHHh-------h-h-------------------cch--HHHHHHHHHHHHHHhh
Q 006812 335 IDAANMQIALGKFEEAIN---TLKGVVRQT-------E-K-------------------ESE--TRALVFISMGKALCNQ 382 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~---~~~~~l~~~-------~-~-------------------~~~--~~~~~~~~la~~~~~~ 382 (630)
..+..+....|...-+.. .+..-+... . + ..+ ..+.-....+......
T Consensus 866 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e 945 (1236)
T KOG1839|consen 866 KSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLE 945 (1236)
T ss_pred hHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcc
Confidence 111122222222111111 111111000 0 0 011 1133345567777788
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHH
Q 006812 383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWL 461 (630)
Q Consensus 383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~ 461 (630)
|.+.+|.+ ..+++.+.....+..++..+..|..++.++...|+.++|+.+-.++.-+.+...+.+++. ...+.+++..
T Consensus 946 ~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~ 1024 (1236)
T KOG1839|consen 946 DGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALY 1024 (1236)
T ss_pred cchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHH
Confidence 89999999 888888888888888899999999999999999999999999999999999998888877 5667899999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006812 462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQN 541 (630)
Q Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 541 (630)
.+..++...|...+.++..+..-.++++||..+.+..+++.++...++++.|+.+.+.|+.+.....++....+...+..
T Consensus 1025 ~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~ 1104 (1236)
T KOG1839|consen 1025 EFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHA 1104 (1236)
T ss_pred HHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHH
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCCch
Q 006812 542 LSKAYSSMGSYTLAIEFQQRAIDAWES-HGPSAQ 574 (630)
Q Consensus 542 la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~ 574 (630)
+++.+...+++..|....+....++.. +|+++.
T Consensus 1105 ~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hs 1138 (1236)
T KOG1839|consen 1105 LARLFESMKDFRNALEHEKVTYGIYKEQLGPDHS 1138 (1236)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcc
Confidence 999999999999999999999999998 777643
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.28 E-value=4.4e-10 Score=114.93 Aligned_cols=136 Identities=8% Similarity=0.001 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
+....++.+||.+....|.+++|+..++.++++. ++ ...+..+++.++.+.+++++|+..+++++.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~------- 148 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----PD--SSEAFILMLRGVKRQQGIEAGRAEIELYFS------- 148 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----CC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhh-------
Confidence 3456777888888888888888888888887762 22 234667788888888888888888888777
Q ss_pred CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
..|+.+..++.+|.++...|++++|+.+|++++. .+|+...++..+|.++...|+.++|...|+++++..
T Consensus 149 -~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 149 -GGSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4566777778888888888888888888888876 456666778888888888888888888888887543
No 109
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.23 E-value=1.2e-10 Score=84.45 Aligned_cols=76 Identities=32% Similarity=0.439 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
|..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++.++.++.++|.+|...|++++|++++++++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 566788999999999999999999999999999 6666778888999999999999999999999999999999875
No 110
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=8.4e-08 Score=87.00 Aligned_cols=308 Identities=15% Similarity=0.019 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL 190 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 190 (630)
.+.....-|..-...| +|.+|.....++-+.. +.-..+|..-+.+-..+|+++.|-.++.++-+...
T Consensus 83 ra~~~~~egl~~l~eG-~~~qAEkl~~rnae~~----------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-- 149 (400)
T COG3071 83 RARKALNEGLLKLFEG-DFQQAEKLLRRNAEHG----------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-- 149 (400)
T ss_pred HHHHHHHHHHHHHhcC-cHHHHHHHHHHhhhcC----------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC--
Confidence 4455566676777777 9999999888743221 23355667778888899999999999988876511
Q ss_pred hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHH
Q 006812 191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270 (630)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (630)
.+. .......+.+....|+++.|.....+++++. |....++.....+|...|++.+...
T Consensus 150 ------------~~~-l~v~ltrarlll~~~d~~aA~~~v~~ll~~~--------pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 150 ------------DDT-LAVELTRARLLLNRRDYPAARENVDQLLEMT--------PRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred ------------Cch-HHHHHHHHHHHHhCCCchhHHHHHHHHHHhC--------cCChHHHHHHHHHHHHhccHHHHHH
Confidence 111 2345578999999999999999999888554 3335677888899999999999988
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 006812 271 FGLKALEIHKKGLGHNSVEVAHDRRLLGVI--YSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE 348 (630)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 348 (630)
+..+.-+-.- . .+++... +.+.+.. ....++-..+....+.-.++-..... .+.....++.-+...|+.+
T Consensus 209 ~l~~L~ka~~--l--~~~e~~~-le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~---~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 209 ILPKLRKAGL--L--SDEEAAR-LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN---DPELVVAYAERLIRLGDHD 280 (400)
T ss_pred HHHHHHHccC--C--ChHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhc---ChhHHHHHHHHHHHcCChH
Confidence 8776544211 1 2222221 2222211 11111211122111111111111122 2445556778888999999
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812 349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE 428 (630)
Q Consensus 349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 428 (630)
+|.++.+++++..-+.. ....++ ...-++...=++..++.++.. |+.+..+..||.++.+.+.|.
T Consensus 281 ~A~~~i~~~Lk~~~D~~-----L~~~~~--~l~~~d~~~l~k~~e~~l~~h--------~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 281 EAQEIIEDALKRQWDPR-----LCRLIP--RLRPGDPEPLIKAAEKWLKQH--------PEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHHhccChh-----HHHHHh--hcCCCCchHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhHHH
Confidence 99999999987533221 111111 223456666566666555432 344478899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812 429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK 483 (630)
Q Consensus 429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 483 (630)
+|..+++.++.. .+....+..+|.++.++|+..+|.+.+++++.+..
T Consensus 346 kA~~~leaAl~~--------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 346 KASEALEAALKL--------RPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHHhc--------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 999999998874 23456789999999999999999999999996543
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.22 E-value=1.5e-09 Score=111.82 Aligned_cols=269 Identities=11% Similarity=0.065 Sum_probs=186.2
Q ss_pred CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812 286 NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES 365 (630)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 365 (630)
-.+....++..|...|...+++++|+...+.+++. .|.....++.+|.++...++++++... .++.....+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence 45566778889999999999999999999877775 688888999999999999999888777 6666555443
Q ss_pred ---------------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 006812 366 ---------------ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA 430 (630)
Q Consensus 366 ---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 430 (630)
...-.++..+|.+|-++|+.++|...+++++++. |..+.+++++|..|... +.++|
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHH
Confidence 1112477888999999999999999999988875 56678889999999888 99999
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh
Q 006812 431 ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRP 510 (630)
Q Consensus 431 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 510 (630)
++++.+|+..+-.... ....-..|.. .+...-.+++.=..+.++... ..+ ....+..+.-+=..|...++|
T Consensus 169 ~~m~~KAV~~~i~~kq-~~~~~e~W~k--~~~~~~~d~d~f~~i~~ki~~----~~~--~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQ-YVGIEEIWSK--LVHYNSDDFDFFLRIERKVLG----HRE--FTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred HHHHHHHHHHHHhhhc-chHHHHHHHH--HHhcCcccchHHHHHHHHHHh----hhc--cchhHHHHHHHHHHHhhhhhh
Confidence 9999998886432210 0000111111 111122222222222222222 111 233445566667889999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812 511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK 590 (630)
Q Consensus 511 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~ 590 (630)
++++.+++.++++ .|....+...++.+|. +.|.. ...+++++++..-.. ....+..++.-|++...-
T Consensus 240 ~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~--~~~~~~~~i~~fek~i~f 306 (906)
T PRK14720 240 DEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGN--NRKPVKDCIADFEKNIVF 306 (906)
T ss_pred hHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcccc--CCccHHHHHHHHHHHeee
Confidence 9999999999994 4555568899999998 55555 777888877643221 225567789999886655
Q ss_pred hcC
Q 006812 591 ASG 593 (630)
Q Consensus 591 ~~~ 593 (630)
..|
T Consensus 307 ~~G 309 (906)
T PRK14720 307 DTG 309 (906)
T ss_pred cCC
Confidence 443
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.22 E-value=3.9e-10 Score=92.28 Aligned_cols=125 Identities=10% Similarity=-0.010 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCCh
Q 006812 389 KRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKV 468 (630)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 468 (630)
..++++++++. |.. +..+|.++...|++++|..+|++++.+ ++....++..+|.++...|++
T Consensus 13 ~~~~~~al~~~--------p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVD--------PET---VYASGYASWQEGDYSRAVIDFSWLVMA-------QPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcC--------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHHhhH
Confidence 34566666653 332 557899999999999999999999875 223456889999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006812 469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS 547 (630)
Q Consensus 469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 547 (630)
++|+..|++++. -.|....+++++|.++...|++++|+..|++++.+. |+....+.+++.+..
T Consensus 75 ~~A~~~y~~Al~--------l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 75 TTAINFYGHALM--------LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHh--------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH
Confidence 999999999998 346667799999999999999999999999999853 444456666666554
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=3e-07 Score=90.75 Aligned_cols=259 Identities=15% Similarity=0.073 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHhccchHH---------HHHHHHHHHHHHHHhcCHHHHHHHH
Q 006812 206 MHAVHLELANVKTAMGRREEALEHLQKCL----EIKELILEEDSRE---------LGVANRDLAEAFVAVLNFKEALPFG 272 (630)
Q Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~ 272 (630)
+...|++.+..+...++.+.|+++|+++- ++.+-. .++.+. ....|...|......|+.+.|+.+|
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 44678899999999999999999999852 222211 111111 1245667788888999999999999
Q ss_pred HHHHHHHhhhc-----CC---------CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc--CCChhHHHHHHH
Q 006812 273 LKALEIHKKGL-----GH---------NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW--GLSSELLRAEID 336 (630)
Q Consensus 273 ~~al~~~~~~~-----~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~ 336 (630)
..|-+.+.... |. ...+. .+.+.||..|...|++.+|+.+|.+|......+ -...+.-.-+.+
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88866443210 00 01112 233456666666666666666666554432111 000111111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHH-----HHHHHHHhhcCCCcHHHH
Q 006812 337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLE-----IACGILDKKETISPEEVA 411 (630)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-----~a~~~~~~~~~~~~~~~~ 411 (630)
++.. ....+.-.|..+|++.-- ....-..+|.+.|.+.+|++..- .++++..+...+ ...+
T Consensus 1015 lal~-s~~~d~v~aArYyEe~g~-----------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~--~sDp 1080 (1416)
T KOG3617|consen 1015 LALM-SGGSDLVSAARYYEELGG-----------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA--GSDP 1080 (1416)
T ss_pred HHhh-cCchhHHHHHHHHHHcch-----------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC--CCCH
Confidence 1110 011112222223322100 00011234445555555554322 133444333322 1233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHhC---------------CCCCCc---hhHHHHHHHHHHHHcCC
Q 006812 412 DAYSEISMQYESMNEFETAISLL------KRTLALLEKL---------------PQAQHS---EGSVSARIGWLLLLTGK 467 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~---------------~~~~~~---~~~~~~~la~~~~~~g~ 467 (630)
..+..-+..+....+|++|..++ +.|+.++... .+...+ ...++..+|.++.++|.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 56667788888888899988765 4455544211 011111 24577899999999999
Q ss_pred hhhHHHHHHHHHH
Q 006812 468 VPQAIPYLESAAE 480 (630)
Q Consensus 468 ~~~A~~~~~~al~ 480 (630)
|..|-+-|.+|=.
T Consensus 1161 Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1161 YHAATKKFTQAGD 1173 (1416)
T ss_pred hHHHHHHHhhhhh
Confidence 9999998887754
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.19 E-value=2.2e-09 Score=109.91 Aligned_cols=133 Identities=11% Similarity=0.010 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 448 (630)
+.++..||.+....|.+++|...++.++++. |+...+..+++.++.+.+++++|+..+++++.. .++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-----~p~ 152 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-----GSS 152 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-----CCC
Confidence 6699999999999999999999999999887 788899999999999999999999999999885 222
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
....++.+|.++.+.|++++|+.+|++++. .+|+...++..+|.++...|+.++|...|+++++..
T Consensus 153 --~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 153 --SAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred --CHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 356789999999999999999999999997 457778899999999999999999999999999865
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.19 E-value=4.4e-10 Score=91.96 Aligned_cols=110 Identities=19% Similarity=0.094 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh
Q 006812 431 ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRP 510 (630)
Q Consensus 431 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 510 (630)
..++++++++. |. .+..+|.++...|++++|..+|++++. ..|....++..+|.++...|++
T Consensus 13 ~~~~~~al~~~--------p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVD--------PE--TVYASGYASWQEGDYSRAVIDFSWLVM--------AQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcC--------HH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHHhhH
Confidence 45677777751 22 356789999999999999999999998 4577788999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 511 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
++|+..|++++. .+|....+++++|.++...|++++|+..|++++++.
T Consensus 75 ~~A~~~y~~Al~--------l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 75 TTAINFYGHALM--------LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHh--------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999998 446667899999999999999999999999999764
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=1e-09 Score=106.45 Aligned_cols=226 Identities=18% Similarity=0.155 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812 289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR 368 (630)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 368 (630)
.....-..++..+...|-...|+..+++ ...+-....+|...|+..+|..+..+-++ .+++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Er--------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d---- 456 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFER--------------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPD---- 456 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHh--------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCc----
Confidence 4445556789999999999999988875 45566778899999999999999888776 1111
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 448 (630)
+..|..+|.+....- +++++.++... ..+.+...+|......++|.++...++.++++.
T Consensus 457 ~~lyc~LGDv~~d~s-------~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n------- 515 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPS-------LYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEIN------- 515 (777)
T ss_pred chhHHHhhhhccChH-------HHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhcC-------
Confidence 335666666555544 45555554432 233455667777777899999999999999872
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
+....+|+.+|.+..+.++++.|.+.|..++. -.|+...++++++..|...|+-.+|...+++|++.
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc----- 582 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC----- 582 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-----
Confidence 22356899999999999999999999999998 35777889999999999999999999999999983
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Q 006812 529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG 570 (630)
Q Consensus 529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 570 (630)
+.....++.|...+....|.+++|++.|.+.+.+.....
T Consensus 583 ---n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 583 ---NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred ---CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 344447888888999999999999999999998766643
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=3.1e-07 Score=79.78 Aligned_cols=292 Identities=13% Similarity=0.075 Sum_probs=189.9
Q ss_pred hhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHH
Q 006812 168 YSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE 247 (630)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (630)
.+-.+|.+|++++..-.+. .|.....+..+|.||+...+|..|.++|++.- ..+|.
T Consensus 21 I~d~ry~DaI~~l~s~~Er----------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~--------ql~P~ 76 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER----------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLG--------QLHPE 76 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhChH
Confidence 4566777777766544333 23233566789999999999999999999855 44565
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812 248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS 327 (630)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 327 (630)
....-..-+...++.+.+..|+.......+ +......++..-+-+.+..+++..+....++ . ..
T Consensus 77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ-------l-p~ 140 (459)
T KOG4340|consen 77 LEQYRLYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ-------L-PS 140 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHh-------c-cC
Confidence 566666678888889999999877655432 2223334455556677777888777665543 1 11
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC--
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI-- 405 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-- 405 (630)
...+.+.++.|-+.++.|+++.|.+-|+.+++..+-.+. .-++++.++++.++++.|+++..+.++...+.++.
T Consensus 141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch----hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 356778889999999999999999999999987654433 66789999999999999999998877655443311
Q ss_pred --------Cc-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC
Q 006812 406 --------SP-----------EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG 466 (630)
Q Consensus 406 --------~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 466 (630)
+. .....+++..+.++.+.|+++.|.+.+...- ++. +...+..++.+++..- ..+
T Consensus 217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP---PRa--E~elDPvTLHN~Al~n-~~~ 290 (459)
T KOG4340|consen 217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP---PRA--EEELDPVTLHNQALMN-MDA 290 (459)
T ss_pred ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC---Ccc--cccCCchhhhHHHHhc-ccC
Confidence 10 1234566667788888899888866543211 110 1111233555555432 235
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHH
Q 006812 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517 (630)
Q Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 517 (630)
++.+...-++-.+.+ .|--.++..++-.+|++..-|+-|...+
T Consensus 291 ~p~~g~~KLqFLL~~--------nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQ--------NPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred CccccHHHHHHHHhc--------CCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 555555555444442 2333445666666777666666655544
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=1.3e-08 Score=99.04 Aligned_cols=223 Identities=17% Similarity=0.117 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
.....++..+...|-...|+..|++ ...+.....||...|+..+|..+..+-++ .
T Consensus 399 q~q~~laell~slGitksAl~I~Er----------------lemw~~vi~CY~~lg~~~kaeei~~q~le---------k 453 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFER----------------LEMWDPVILCYLLLGQHGKAEEINRQELE---------K 453 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHh----------------HHHHHHHHHHHHHhcccchHHHHHHHHhc---------C
Confidence 3455789999999999999999887 34566778899999999999888776554 1
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET 367 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 367 (630)
+..+..|..+|.+.....-|++|.++.+. ....+...+|......++|.++..+++..+++.+ .
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~------------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np----l 517 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSNY------------ISARAQRSLALLILSNKDFSEADKHLERSLEINP----L 517 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhhh------------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCc----c
Confidence 22335566677776666556665555432 2233556667777788999999999999998543 3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
...+|+.+|.+..+.++++.|.++|...+.+. |+...+|++++..|...++-.+|...+.+|++-.
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn------ 583 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN------ 583 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC------
Confidence 45599999999999999999999999988875 7888999999999999999999999999999852
Q ss_pred CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF 486 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (630)
.....+|.|...+....|.+++|++.|.+.+.+.+...
T Consensus 584 -~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 584 -YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred -CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 22235777888888999999999999999998776553
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=4.2e-09 Score=91.22 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=102.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 006812 424 MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA 503 (630)
Q Consensus 424 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 503 (630)
.++.++++..+++++.. ++.+...|..+|.+|...|++++|+..|++++.+ .|+...++..+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~-------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 45567777777777764 2334668999999999999999999999999983 46667788999997
Q ss_pred H-HHcCC--hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 504 Y-LELDR--PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 504 ~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
+ ...|+ +++|...++++++ .+|+...++..+|..+...|++++|+.+|+++++....
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~--------~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALA--------LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5 67787 5999999999999 55777789999999999999999999999999987544
No 120
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.14 E-value=1.8e-05 Score=82.24 Aligned_cols=440 Identities=13% Similarity=0.044 Sum_probs=270.9
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG 188 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 188 (630)
...+.+.+++|.+++....+++.|..++++++.+..+. +- ......+...++.++.+.+... |...+++.++..+
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERH---RL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---ch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 45678899999999976669999999999999887541 11 1123455667889998888877 9999999999866
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLEL-ANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE 267 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (630)
...... .. ..+..+ ...+...+++..|++.++......... .+......+....+.+....+..++
T Consensus 131 ~~~~~~----------w~-~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 131 TYGHSA----------WY-YAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred ccCchh----------HH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchh
Confidence 522111 11 112122 333333379999999999988877643 3334445555666777888888999
Q ss_pred HHHHHHHHHHHHhhh--cCCCCHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHHHcCCCh---------------
Q 006812 268 ALPFGLKALEIHKKG--LGHNSVEVAHDRRLLGV--IYSGLEEHQKALEQNELSQKVLKTWGLSS--------------- 328 (630)
Q Consensus 268 A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------- 328 (630)
+++..+++....... .+..++....++..+-. ++...|+++.+...+.+....+......+
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 999999987766643 22223333444444433 44567787788777766665554432221
Q ss_pred ----------h-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc----------------------
Q 006812 329 ----------E-----------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES---------------------- 365 (630)
Q Consensus 329 ----------~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------------- 365 (630)
. .+-++.--|......+..++|.+++.++++...+..
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~ 357 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR 357 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence 0 112233335556677777799999999887654422
Q ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812 366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI-SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL 444 (630)
Q Consensus 366 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 444 (630)
.....+....+.+..-.+++..|...+........+.... ........++..|..+...|+.+.|..+|.+..-.....
T Consensus 358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~ 437 (608)
T PF10345_consen 358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA 437 (608)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh
Confidence 0112334456777788899999999999888776544321 122346778889999999999999999998554333222
Q ss_pred CCCCC--ch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHH--HcCChhHHHHHH
Q 006812 445 PQAQH--SE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP-KHFGVGYIYNNLGAAYL--ELDRPQSAAQVF 517 (630)
Q Consensus 445 ~~~~~--~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~ 517 (630)
..... .+ ..+..++..++...+.-.....-..+.++........ .+.....++..+-.++. ..-...++...+
T Consensus 438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l 517 (608)
T PF10345_consen 438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL 517 (608)
T ss_pred hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 22222 22 2333677777776665444222223333321111111 11122222222222222 223345899999
Q ss_pred HHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 518 AFAKDIM-DVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 518 ~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
.++++.. ... + +..-..-++..++..+. .|+..+......++....++.
T Consensus 518 ~~~L~~~~~~~-~-n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 518 QEALKMANNKL-G-NSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred HHHHHHHHHhh-c-cchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence 9999887 332 1 23333445666777777 899998888888887766665
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.14 E-value=5.1e-09 Score=90.68 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=97.8
Q ss_pred hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH
Q 006812 382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL 461 (630)
Q Consensus 382 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 461 (630)
.++.++++..+++++... |+....|..+|.+|...|++++|+..|++++.+ .++ +..++..+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~--------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~--~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGE--NAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHH
Confidence 556677788888877764 566788999999999999999999999999886 222 34578888986
Q ss_pred H-HHcCC--hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 462 L-LLTGK--VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 462 ~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
+ ...|+ +++|...++++++ .+|....++..+|.++...|++++|+.+|++++++.
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~--------~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALA--------LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4 67777 5899999999998 456667789999999999999999999999998864
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.11 E-value=2.4e-09 Score=85.29 Aligned_cols=120 Identities=15% Similarity=0.055 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
....+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++++|+..|.++..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-------- 98 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-------- 98 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------
Confidence 346788999999999999999999988873 4777889999999999999999999999999984
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Q 006812 532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLK 588 (630)
Q Consensus 532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~ 588 (630)
.|+....+.++|.++...|+.+.|.+.|+.++.... ..+....-.++|..+++.+.
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG-EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHhh
Confidence 345558999999999999999999999999998873 22333444455666665543
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=9.7e-09 Score=87.87 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=137.4
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812 323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK 402 (630)
Q Consensus 323 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 402 (630)
....+|....+ ..++..+...|+-+.+..+..++....+++ ...+..+|......|++.+|+..+.++....
T Consensus 59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d----~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--- 130 (257)
T COG5010 59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD----RELLAAQGKNQIRNGNFGEAVSVLRKAARLA--- 130 (257)
T ss_pred HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc----HHHHHHHHHHHHHhcchHHHHHHHHHHhccC---
Confidence 33446766777 888999999999999988888866544433 2245558999999999999999999998765
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812 403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERL 482 (630)
Q Consensus 403 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 482 (630)
|.....|+.+|.+|.+.|++++|...|.+++++.... ..+..|+|..+.-.|+++.|..++..+..
T Consensus 131 -----p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------p~~~nNlgms~~L~gd~~~A~~lll~a~l-- 196 (257)
T COG5010 131 -----PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------PSIANNLGMSLLLRGDLEDAETLLLPAYL-- 196 (257)
T ss_pred -----CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 5667899999999999999999999999999974322 24789999999999999999999998876
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006812 483 KESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFA 520 (630)
Q Consensus 483 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 520 (630)
..+....+..+++.+...+|++++|...-.+-
T Consensus 197 ------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 197 ------SPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred ------CCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 22334557789999999999999998766543
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.09 E-value=5.2e-08 Score=87.23 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
..++..|..+...|+|++|+..|++.+... +..+....+...+|.+|+..+++++|+..+++.++..+ ++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P-----~~ 102 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----TH 102 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-----CC
Confidence 456678999999999999999999988654 55567777889999999999999999999999999876 57
Q ss_pred HHHHHHHHHHHHHHhccc---------------cHHHHHHHHHHHHHHHHHcCCChhHH--------------HHHHHHH
Q 006812 288 VEVAHDRRLLGVIYSGLE---------------EHQKALEQNELSQKVLKTWGLSSELL--------------RAEIDAA 338 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~la 338 (630)
+....+++.+|.++...+ +...+...+.....+.+..++++-.. .--..+|
T Consensus 103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888889998764443 33333333333334445554442222 2223568
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812 339 NMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 394 (630)
..|.+.|.|..|+.-++.+++..+..+. ...++..++..|...|..++|......
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~-~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQA-TRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8899999999999999999998876543 466899999999999999999876553
No 125
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=4.8e-08 Score=85.48 Aligned_cols=184 Identities=15% Similarity=0.129 Sum_probs=129.0
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.+..++..|..++..|+|.+|+..|++.+..... .+....+.+.+|.++...|++++|+..+++.++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556788999999999999999999999887322 234457788999999999999999999999887
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVL-----------NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL 304 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (630)
.. ++++....+++.+|.++.... ...+|+..|+..+..+++ ++....+-..+..+..
T Consensus 71 ~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~-----S~y~~~A~~~l~~l~~-- 138 (203)
T PF13525_consen 71 LY-----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN-----SEYAEEAKKRLAELRN-- 138 (203)
T ss_dssp H------TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT-----STTHHHHHHHHHHHHH--
T ss_pred HC-----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC-----chHHHHHHHHHHHHHH--
Confidence 65 667778888999998876653 234677777777766653 3322232222222211
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812 305 EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK 384 (630)
Q Consensus 305 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 384 (630)
....--..+|..|.+.|.|..|+..++.+++..+.... ...++..++..|..+|.
T Consensus 139 ------------------------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~-~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 139 ------------------------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA-AEEALARLAEAYYKLGL 193 (203)
T ss_dssp ------------------------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH-HHHHHHHHHHHHHHTT-
T ss_pred ------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch-HHHHHHHHHHHHHHhCC
Confidence 12333456789999999999999999999998776543 35588888999999988
Q ss_pred HHHHH
Q 006812 385 FADAK 389 (630)
Q Consensus 385 ~~~A~ 389 (630)
.+.|.
T Consensus 194 ~~~a~ 198 (203)
T PF13525_consen 194 KQAAD 198 (203)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 87543
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.07 E-value=4.5e-08 Score=101.24 Aligned_cols=230 Identities=14% Similarity=0.068 Sum_probs=159.1
Q ss_pred chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 006812 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKK 281 (630)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (630)
..|....++..|...+...+++++|+..++.+++ .+|.....++.+|.++...+++.++... .++.+...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 3456678888999999999999999999998774 4455678899999999999999888776 56555443
Q ss_pred hcCC-----------CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH
Q 006812 282 GLGH-----------NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEA 350 (630)
Q Consensus 282 ~~~~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 350 (630)
.... +.+..-.+++.+|.+|..+|+.++|...+++++++ +|..+.+++++|..|... +.++|
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHh-hHHHH
Confidence 1100 11222357888999999999999999999999987 688999999999999999 99999
Q ss_pred HHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812 351 INTLKGVVRQTEKES--ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE 428 (630)
Q Consensus 351 ~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 428 (630)
+.++.+++...-... ......|..+ +.....+++.=....++.+.... .......+.-+=..|...++|+
T Consensus 169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~~~~------~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLGHRE------FTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHH--HhcCcccchHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhhhhhh
Confidence 999999988543221 1111122221 11222222222222222211111 1234456666667888999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHH
Q 006812 429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLL 463 (630)
Q Consensus 429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 463 (630)
+++.+++.++++..+ +..+...++.+|.
T Consensus 241 ~~i~iLK~iL~~~~~-------n~~a~~~l~~~y~ 268 (906)
T PRK14720 241 EVIYILKKILEHDNK-------NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhcCCc-------chhhHHHHHHHHH
Confidence 999999999986322 2345677777776
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=6.7e-08 Score=81.94 Aligned_cols=190 Identities=16% Similarity=0.135 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc
Q 006812 347 FEEAINTLKGVVRQTEK--ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM 424 (630)
Q Consensus 347 ~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 424 (630)
.++-.++....+...+. ..+....++-.+..+....|+.+.|..++++....+ |....+...-|..+...
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEAT 99 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHh
Confidence 34444444444433222 123334455555556666666777766666544333 22224444456666667
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812 425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY 504 (630)
Q Consensus 425 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 504 (630)
|++++|+++|+..++ +++.+..++-.--.+...+|+.-+|++.+..-++.+ +...++|..++.+|
T Consensus 100 ~~~~~A~e~y~~lL~-------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLE-------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIY 164 (289)
T ss_pred hchhhHHHHHHHHhc-------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHH
Confidence 777777777766654 222233444444445556666667776666666543 33445677777777
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Q 006812 505 LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG---SYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 505 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 567 (630)
...|+|++|.-++++.+-+ .|.....+..+|.+++-.| +++-|.++|.+++++..
T Consensus 165 ~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 7777777777777776652 2333345555566555544 45556777777776544
No 128
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.04 E-value=5.8e-06 Score=81.00 Aligned_cols=308 Identities=14% Similarity=0.078 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHH------HHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHH
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANR------ALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANR 185 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (630)
+..|-..|.+|.... ++++|+++|++ ++++.+-. ........-...|.-+...|+++.|+..|-++-.
T Consensus 661 ~elydkagdlfeki~-d~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~~ 734 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIH-DFDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC 734 (1636)
T ss_pred hHHHHhhhhHHHHhh-CHHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh
Confidence 456667777888887 99999999876 34433221 0112333334567777788888888888765533
Q ss_pred HH-------------------hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchH
Q 006812 186 ML-------------------GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR 246 (630)
Q Consensus 186 ~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (630)
+. +.+.+.. .....|-.++.-|...|+|+.|.+.|.++-
T Consensus 735 ~~kaieaai~akew~kai~ildniqdqk----------~~s~yy~~iadhyan~~dfe~ae~lf~e~~------------ 792 (1636)
T KOG3616|consen 735 LIKAIEAAIGAKEWKKAISILDNIQDQK----------TASGYYGEIADHYANKGDFEIAEELFTEAD------------ 792 (1636)
T ss_pred HHHHHHHHhhhhhhhhhHhHHHHhhhhc----------cccccchHHHHHhccchhHHHHHHHHHhcc------------
Confidence 32 2222211 111234456777788888888888776632
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH------HHHHHH
Q 006812 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN------ELSQKV 320 (630)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~ 320 (630)
....-...|.+.|++..|.++.++.. ........|..-+.-....|+|.+|...| .+++.+
T Consensus 793 ----~~~dai~my~k~~kw~da~kla~e~~---------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqm 859 (1636)
T KOG3616|consen 793 ----LFKDAIDMYGKAGKWEDAFKLAEECH---------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQM 859 (1636)
T ss_pred ----hhHHHHHHHhccccHHHHHHHHHHhc---------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHH
Confidence 22233456677777777766655432 12233344444455555556665555443 233333
Q ss_pred HHHcCCChh------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH
Q 006812 321 LKTWGLSSE------------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA 388 (630)
Q Consensus 321 ~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 388 (630)
....|...+ ...+...+|.-+...|+...|...|-++-.. ..-..+|...+-|++
T Consensus 860 ydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~------------kaavnmyk~s~lw~d- 926 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF------------KAAVNMYKASELWED- 926 (1636)
T ss_pred HHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH------------HHHHHHhhhhhhHHH-
Confidence 333332211 2234455666666777777777666554321 111122322233333
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHH-HHHH-H-----HHHHHHHcCCHHHHHHH------HHHHHHHHHhCCCCCCchhHHH
Q 006812 389 KRCLEIACGILDKKETISPEEVA-DAYS-E-----ISMQYESMNEFETAISL------LKRTLALLEKLPQAQHSEGSVS 455 (630)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~-~-----la~~~~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~ 455 (630)
+..+.+..+|.+..... ..|. . -..++.+.|-...|+.+ |+-+.++.+-. ..+....+.
T Consensus 927 ------ayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~--~k~k~~~vh 998 (1636)
T KOG3616|consen 927 ------AYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA--AKDKMGEVH 998 (1636)
T ss_pred ------HHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh--hhccCccch
Confidence 33333333332221111 0000 0 01122333444444332 22222222211 112234577
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAER 481 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~ 481 (630)
..++..+...|++++|-+.|-+++.+
T Consensus 999 lk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 999 LKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hHHhhhhhhccchhhhhHhhHHHhhc
Confidence 88899999999999999999999884
No 129
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.04 E-value=6.6e-08 Score=101.03 Aligned_cols=406 Identities=18% Similarity=0.175 Sum_probs=271.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCC
Q 006812 119 ALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGS 198 (630)
Q Consensus 119 g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 198 (630)
+..+...+ ++.+|...=++++++.+..++.+ .|+....+..+...++......+|+.+-.+++.+.-...+.. +++
T Consensus 672 ~v~~~~t~-~~~~a~~~~qk~~d~~Erll~~~--iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~-~~~ 747 (1236)
T KOG1839|consen 672 AVVLYHTE-DFNQAAIQQQKVLDINERLLGLD--IPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLS-HPN 747 (1236)
T ss_pred ceEecCcc-ccchhhhhhHhHHHHHHHHhccc--cchhHHhccccceeeecccHHHHHHHHhhHHHHHhhcccccc-Ccc
Confidence 44455566 78888888889999888885555 457777777777777888889999999999998877666554 222
Q ss_pred CccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHH
Q 006812 199 VEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVA---VLNFKEALPFGLKA 275 (630)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a 275 (630)
. +..+.+.. ....+--+-+..+...+++...+.++.++...+.+ +-+..++.. ......+..-.-++
T Consensus 748 ~-------~a~~~~v~--l~~l~~~ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka 817 (1236)
T KOG1839|consen 748 T-------AATYINVA--LMELGVGEIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKA 817 (1236)
T ss_pred c-------cchhhhHH--HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhh
Confidence 2 22111111 11222226677777777777777766666655544 333333322 22222222211121
Q ss_pred HHHHhhh--cCCCCH---------------------------HHHHHHHHHHHHHhccccHHHHHH---HHHHHHHH-HH
Q 006812 276 LEIHKKG--LGHNSV---------------------------EVAHDRRLLGVIYSGLEEHQKALE---QNELSQKV-LK 322 (630)
Q Consensus 276 l~~~~~~--~~~~~~---------------------------~~~~~~~~la~~~~~~g~~~~A~~---~~~~a~~~-~~ 322 (630)
.+...+. -+...+ ........+..+....|...-+.. .+..-+.. .+
T Consensus 818 ~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r 897 (1236)
T KOG1839|consen 818 KDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPAR 897 (1236)
T ss_pred hhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhh
Confidence 1100000 000000 000000111222222222111111 11111111 11
Q ss_pred HcCCC------------------------h--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh----hcchHHHHHH
Q 006812 323 TWGLS------------------------S--ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE----KESETRALVF 372 (630)
Q Consensus 323 ~~~~~------------------------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~ 372 (630)
..... | ....-....+......|.+.+|.+ ..+++.... ..++..+..|
T Consensus 898 ~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~ 976 (1236)
T KOG1839|consen 898 NYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKY 976 (1236)
T ss_pred hccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHH
Confidence 10000 1 112223344556666777888877 555555443 2467778899
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-
Q 006812 373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE- 451 (630)
Q Consensus 373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 451 (630)
..++.++...|++++|+..-.++.-+.++..+.+++.....+.+++...+..++...|...+.++..+..-..++.+|.
T Consensus 977 ~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen 977 RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988777887777
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
+.+..+++.++...++++.|+.+.+.|+......+|+..-.++.++..+++.+...+++..|....+....++...+|++
T Consensus 1057 a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~ 1136 (1236)
T KOG1839|consen 1057 ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPD 1136 (1236)
T ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCC
Confidence 45558999999999999999999999999999999988889999999999999999999999999999999999999998
Q ss_pred CHHHHHHH
Q 006812 532 HADSIEAC 539 (630)
Q Consensus 532 ~~~~~~~~ 539 (630)
|....++-
T Consensus 1137 hsrt~~S~ 1144 (1236)
T KOG1839|consen 1137 HSRTKESS 1144 (1236)
T ss_pred cccchhhH
Confidence 88766443
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.04 E-value=2.8e-05 Score=76.42 Aligned_cols=290 Identities=17% Similarity=0.159 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH------HHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLK------ALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK 322 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 322 (630)
...|-.-|.+|.+..++++|+++|++ ++++.+-.+ +..+...-..-|.-....|+++.|+.+|-++-.+.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 34566678888888899999998874 455544322 122333333447777788889988888765543322
Q ss_pred H-------------------cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhc
Q 006812 323 T-------------------WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQE 383 (630)
Q Consensus 323 ~-------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~ 383 (630)
. +.+.......|-.++.-|...|+|+.|.++|.++- ....-..+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~------------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD------------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc------------hhHHHHHHHhccc
Confidence 2 22222222233456677777788887777776531 2233345566777
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHhCCC---------CC
Q 006812 384 KFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL------KRTLALLEKLPQ---------AQ 448 (630)
Q Consensus 384 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~---------~~ 448 (630)
+|.+|.+.-++. . .+......|...+.-.-..|+|.+|..+| .+++.++.+..- ..
T Consensus 806 kw~da~kla~e~-------~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC-------H--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred cHHHHHHHHHHh-------c--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh
Confidence 777776554432 1 12345556666666667777777776665 345555544321 11
Q ss_pred Cch--hHHHHHHHHHHHHcCChhhHHHHHHHHHH------HH-------------HHhcCCC-CccHHHHHH------HH
Q 006812 449 HSE--GSVSARIGWLLLLTGKVPQAIPYLESAAE------RL-------------KESFGPK-HFGVGYIYN------NL 500 (630)
Q Consensus 449 ~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~-------------~~~~~~~-~~~~~~~~~------~l 500 (630)
+++ ..+...+|.-|...|+...|...|-++-+ ++ +..-|.+ +..++..|. .-
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaa 956 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAA 956 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHH
Confidence 222 23556778888888888888877755432 11 1111111 011111110 00
Q ss_pred HHHHHHcCChhHHHHH------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 501 GAAYLELDRPQSAAQV------FAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 501 ~~~~~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
..++.+.|-.+.|+.. |+-+.++.+-..... ...+...++..+...|++++|-+.|-+++++
T Consensus 957 vkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 957 VKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 1223344445555433 223333322111111 2256778889999999999999999999865
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.03 E-value=2.4e-08 Score=79.71 Aligned_cols=103 Identities=17% Similarity=0.045 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
++.....+.+|..+...|++++|...|+-...+ ++.....|++||.++..+|++++|+..|.+++.+ .
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~ 99 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----K 99 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----C
Confidence 456677888999999999999999999988876 2334568899999999999999999999999983 3
Q ss_pred CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
|+.+..+.++|.|+...|+.+.|...|+.++..+.
T Consensus 100 ---~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 100 ---IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 45556899999999999999999999999999874
No 132
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=5.6e-09 Score=95.80 Aligned_cols=274 Identities=16% Similarity=0.152 Sum_probs=169.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812 257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEID 336 (630)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 336 (630)
.-++..|+|..++.-++ +. ..+..........+.++|..+|+++..+.-.. +..+....+...
T Consensus 9 rn~fy~G~Y~~~i~e~~--~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~---------~~~~~~l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS--LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIK---------KSSSPELQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHH--CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS----------TTSSCCCHHHHH
T ss_pred HHHHHhhhHHHHHHHhh--cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhc---------cCCChhHHHHHH
Confidence 34567899998886554 11 11344455566678889999999886654221 111222334445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 006812 337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSE 416 (630)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (630)
++..+...++.+.++..++..+... ............|.++...|++++|++.+.+. ........
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~~~~--~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al 136 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELLADQ--AGESNEIVQLLAATILFHEGDYEEALKLLHKG-------------GSLELLAL 136 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCCCTS-----CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHH
Confidence 5555544455555555544433211 11112335566678888999999999887653 11244455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHhcCCCCccHH
Q 006812 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG--KVPQAIPYLESAAERLKESFGPKHFGVG 494 (630)
Q Consensus 417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~ 494 (630)
...++..+++++.|.+.++.+.++ +++ ...+....+++....| ++.+|..+|++..+ ..+...
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~ 201 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQI-----DED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTP 201 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC-----SCC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCH
Confidence 677899999999999888776432 222 1122233344444455 69999999998544 334566
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHcCCCc
Q 006812 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSY-TLAIEFQQRAIDAWESHGPSA 573 (630)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~ 573 (630)
.+++.++.++..+|+|++|.+.+++++. .+|...+++.+++.+...+|+. +.+.+++.+... ..|.+
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~----~~p~h 269 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ----SNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH----HTTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH----hCCCC
Confidence 7889999999999999999999999876 4455667899999999999998 455555555433 34443
Q ss_pred h--hHHHHHHHHHHHHHH
Q 006812 574 Q--DELREARRLLEQLKI 589 (630)
Q Consensus 574 ~--~~~~~A~~~~~~~~~ 589 (630)
+ .++.+....|+++..
T Consensus 270 ~~~~~~~~~~~~FD~~~~ 287 (290)
T PF04733_consen 270 PLVKDLAEKEAEFDRAVA 287 (290)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 3 456677777777654
No 133
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.01 E-value=1.9e-08 Score=85.50 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=97.0
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG 188 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 188 (630)
...+..++.+|.++...| ++++|+..|++++.+.+. +...+.++.++|.++...|++++|+.++++++.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~-------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-- 101 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEG-EYAEALQNYYEAMRLEID-------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-- 101 (168)
T ss_pred hHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcccc-------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 456788899999999999 999999999999987522 1245668899999999999999999999999987
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchH
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR 246 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (630)
.+...+....++.++..+|..+...|+++.|+..+.+++...++..+.+++
T Consensus 102 -------~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 102 -------NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred -------CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 233333344555666666666669999999999999999988887766653
No 134
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=4.1e-08 Score=84.16 Aligned_cols=164 Identities=14% Similarity=0.027 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812 246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG 325 (630)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 325 (630)
|....+ .+++..+...|+-+.+..+..++... ++.....+..+|......|++..|+..+.++..+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----- 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----- 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence 444455 78889999999999998888776543 2222334445799999999999999999998886
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812 326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI 405 (630)
Q Consensus 326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 405 (630)
.|....+++.+|.+|.+.|++++|..-|.++++..+..+. +.+++|..+.-.|+++.|..++..+...-
T Consensus 130 -~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~----~~nNlgms~~L~gd~~~A~~lll~a~l~~------ 198 (257)
T COG5010 130 -APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS----IANNLGMSLLLRGDLEDAETLLLPAYLSP------ 198 (257)
T ss_pred -CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch----hhhhHHHHHHHcCCHHHHHHHHHHHHhCC------
Confidence 7889999999999999999999999999999998877654 88999999999999999999998876532
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 406 SPEEVADAYSEISMQYESMNEFETAISLLKR 436 (630)
Q Consensus 406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 436 (630)
+....+..+++.+...+|++++|.....+
T Consensus 199 --~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 199 --AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred --CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 23446778999999999999999876543
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.99 E-value=3.3e-07 Score=80.26 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (630)
...++..|..+...|+|.+|+..|++.+... +.++....+...+|.+++..|++++|+..+++.+...+ +
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP-----~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP-----N 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-----T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----C
Confidence 3567789999999999999999999988655 56677788999999999999999999999999999877 4
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES- 365 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~- 365 (630)
++....+++.+|.++.....-. . ......+...+|+..|+..+...|+..
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~--~---------------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGI--L---------------------------RSDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHH--H----------------------------TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred CcchhhHHHHHHHHHHHhCccc--h---------------------------hcccChHHHHHHHHHHHHHHHHCcCchH
Confidence 6677788888888776542111 0 000111222333333333333333211
Q ss_pred ------------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 006812 366 ------------ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAI 431 (630)
Q Consensus 366 ------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 431 (630)
...+.--..+|..|.+.|.+..|+..++.+++-+.. .+....++..++..|...|..+.|.
T Consensus 126 ~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~-----t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 126 AEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD-----TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT-----SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----CchHHHHHHHHHHHHHHhCChHHHH
Confidence 112334456789999999999999999998877643 3566788999999999999988543
No 136
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.98 E-value=1.5e-08 Score=86.19 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
...+..+|.++...|++++|+..|++++.+. ++++....++.++|.++...|++++|+.++++++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~------- 102 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN------- 102 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 5678999999999999999999999999852 3444566789999999999999999999999999853
Q ss_pred CHHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHHHc
Q 006812 532 HADSIEACQNLSKAYS-------SMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 532 ~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~ 569 (630)
|.....+.++|.++. ..|++++|...+.+++..++..
T Consensus 103 -~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 103 -PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred -cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 333345555555555 9999999999999999988873
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=7.6e-07 Score=75.75 Aligned_cols=170 Identities=11% Similarity=-0.016 Sum_probs=128.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP 407 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 407 (630)
++....+-.+..+....|+.+-|..++++....++..+. +...-|..+...|++++|+++|+..++-.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R----V~~lkam~lEa~~~~~~A~e~y~~lL~dd-------- 116 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR----VGKLKAMLLEATGNYKEAIEYYESLLEDD-------- 116 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHhhchhhHHHHHHHHhccC--------
Confidence 445556666677777889999999999988877755433 44556777888899999999998865432
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
|....++...-.+...+|+.-+|++.+.+-++.+. .+..+|..++.+|...|+|++|.-++++.+-
T Consensus 117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll------- 182 (289)
T KOG3060|consen 117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-------NDQEAWHELAEIYLSEGDFEKAAFCLEELLL------- 182 (289)
T ss_pred cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-------
Confidence 44445555666667788888899888887777542 2346899999999999999999999999886
Q ss_pred CCCccHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHH
Q 006812 488 PKHFGVGYIYNNLGAAYLELD---RPQSAAQVFAFAKDIM 524 (630)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~ 524 (630)
..|.....+..+|.+++-+| +++-|.++|.+++++.
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 34666667778888888776 4677889999999964
No 138
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.97 E-value=3.5e-08 Score=84.13 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=89.3
Q ss_pred HHHHHhhccccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHH
Q 006812 96 LQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSD 175 (630)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 175 (630)
.+.+..+.....++..+..++.+|..+...| ++++|+.+|++++.+.+.. +..+.++..+|.++...|++++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~-------~~~~~~~~~la~~~~~~g~~~~ 90 (172)
T PRK02603 19 ADLILKILPINKKAKEAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDP-------NDRSYILYNMGIIYASNGEHDK 90 (172)
T ss_pred HHHHHHHcccccHhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHcCCHHH
Confidence 3334444555566788889999999999999 9999999999999876432 2346688999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHHh
Q 006812 176 SLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR-------REEALEHLQKCLEIKELIL 241 (630)
Q Consensus 176 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~ 241 (630)
|+..+++++.+. |.....+..+|.++...|+ ++.|+..++++++..+...
T Consensus 91 A~~~~~~al~~~----------------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 91 ALEYYHQALELN----------------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHHHHHhC----------------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999871 2223445566777766555 5555555566555554443
No 139
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=5.1e-07 Score=76.14 Aligned_cols=201 Identities=15% Similarity=0.127 Sum_probs=129.6
Q ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
+....+..|..-+..|...++|++|..++.++.+-.+.+.. ....+.++...+.+......+.++..+++++..++.+
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334555666667777778888888888888776665442 2345667777777777888888888888888888777
Q ss_pred CCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 444 LPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 444 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
...+ .+.+.++-.-|. .....++++|+.+|++++.+.+.. .........+...+.++.+..++++|...+.+-..+
T Consensus 104 ~Gsp-dtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 104 CGSP-DTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred hCCc-chHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 6332 222223333333 345667888888888888876553 222333455667788888888888888877776655
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 524 MDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
..+.- ..+.....+.....+|.-..+|..|...++...++-.-.+++
T Consensus 180 ~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se 226 (308)
T KOG1585|consen 180 ADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE 226 (308)
T ss_pred HHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence 54432 223333455555666666778888888888876654444443
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.96 E-value=2.5e-07 Score=82.83 Aligned_cols=178 Identities=11% Similarity=-0.027 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
...++..|..++..| ++++|+..|++.+...+. ++....+...+|.+|++.+++++|+..+++.++.
T Consensus 32 ~~~~Y~~A~~~~~~g-~y~~Ai~~f~~l~~~yP~-------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~----- 98 (243)
T PRK10866 32 PSEIYATAQQKLQDG-NWKQAITQLEALDNRYPF-------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----- 98 (243)
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----
Confidence 345677888888888 999999999998886632 2456667889999999999999999999999998
Q ss_pred hcCCCCCCccchhhHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHHh---------ccc
Q 006812 192 EEGLGGSVEDIKPIMHAVHLELANVKTAMG---------------R---REEALEHLQKCLEIKELIL---------EED 244 (630)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~---------~~~ 244 (630)
+|+++.. ..+++.+|.++...+ + ..+|+..|++.++..+... ..-
T Consensus 99 ----~P~~~~~----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 99 ----NPTHPNI----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred ----CcCCCch----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 5555543 467778888764443 1 2456677777665542210 000
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 006812 245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE 315 (630)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (630)
...++.--..+|..|.+.|.|..|+.-++.+++.++ +.+....++..++..|...|..++|..+..
T Consensus 171 ~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 171 KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 112234445678899999999999999999998776 456677888899999999999998877553
No 141
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.3e-06 Score=73.73 Aligned_cols=218 Identities=14% Similarity=0.040 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (630)
+..|..-+.+|....+|++|..++.++.+-.+.. ...-..+.++-..+.+......+.++..+|+++..++.+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G--- 105 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG--- 105 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---
Confidence 4556667788888999999999999999877654 33334577888889999999999999999999999998764
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh--c
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK--E 364 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~ 364 (630)
.|+.+..-..-+--.....++++|+..|++++.+...-+........+...+.++.+..++++|-..+.+-...... .
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 33333333333444556779999999999999998887766777788888999999999999998888775544332 2
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812 365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL 434 (630)
Q Consensus 365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 434 (630)
.+.....+.....+|....+|..|..+++..-++-.-. .++...++.+|-..| ..|+.++....+
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~----~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL----KSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc----ChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 23334456666677788889999999998865543222 245566777766655 567777765554
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.92 E-value=1.7e-08 Score=82.59 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
......+|..+...|++++|...+++++.. +|.....+..+|.++...|++++|..++++++.+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 80 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-------- 80 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 456789999999999999999999998873 4666778999999999999999999999999883
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
+|.....++.+|.+|...|++++|+.+++++++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45666889999999999999999999999999864
No 143
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.92 E-value=3.9e-08 Score=83.84 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
+..+..+|..+...|++++|+.+|++++.+. ++.+....++..+|.++...|++++|+.++++++.+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 101 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-------- 101 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 5678999999999999999999999999853 233445678999999999999999999999999984
Q ss_pred CHHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812 532 HADSIEACQNLSKAYSSMGS-------YTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ 586 (630)
Q Consensus 532 ~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~ 586 (630)
+|.....+..+|.++...|+ +++|+..++++++.+.......++++.++...+..
T Consensus 102 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 102 NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 35556677788888877654 67777777777777776444444555555555443
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.90 E-value=2.4e-07 Score=76.31 Aligned_cols=123 Identities=18% Similarity=0.216 Sum_probs=97.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh
Q 006812 303 GLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ 382 (630)
Q Consensus 303 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~ 382 (630)
..++...+...++ .+....+..+....+.+.+|.+++..|++++|...|+.++... .++.....+...++.++...
T Consensus 23 ~~~~~~~~~~~~~---~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 23 QAGDPAKAEAAAE---QLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HCCCHHHHHHHHH---HHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHc
Confidence 4666666655444 3444555556678888999999999999999999999999866 34455567888999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTL 438 (630)
Q Consensus 383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 438 (630)
|++++|+..++... ..+.....+..+|.+|...|++++|+..|++++
T Consensus 99 ~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 GQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999986521 223455678889999999999999999999874
No 145
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.90 E-value=1.2e-07 Score=73.41 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
+.+.+|.++-..|+.++|+.+|++++. .|...+....++..+|..+..+|++++|+..+++++.-+ |+.+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~ 72 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDE 72 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcc
Confidence 678899999999999999999999998 444556667889999999999999999999999998722 1222
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ 586 (630)
Q Consensus 534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~ 586 (630)
....+...++.++...|++++|+..+-.++.- ....+++|+..|-+
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~-------~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALAE-------TLPRYRRAIRFYAD 118 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 25566677899999999999999999887742 23378888887753
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.1e-08 Score=87.54 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=91.7
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
+..++.-+-.-|.-+...+ +|.+|+..|.+|+++.+ ..+..|.+.+.+|.++|.++.|++.++.++.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~-~Y~eAv~kY~~AI~l~P----------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNK-DYQEAVDKYTEAIELDP----------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCC----------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-
Confidence 3456677778888888888 99999999999998863 34678899999999999999999999999999
Q ss_pred hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK 237 (630)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 237 (630)
.|.+..+|..||.+|..+|++.+|++.|+++|++.
T Consensus 145 ---------------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 145 ---------------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred ---------------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 67788999999999999999999999999999765
No 147
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=8.6e-08 Score=78.45 Aligned_cols=108 Identities=19% Similarity=0.091 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
.+|........+|..+...|++++|...+++++...+ .....+..+|.++...|++++|+.++++++.+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 80 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--------YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--- 80 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 3444567788999999999999999999999887533 23467788999999999999999999988776
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES 365 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 365 (630)
.|.....+..+|.++...|++++|+..++++++..+.+.
T Consensus 81 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 81 ---DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred ---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 567788889999999999999999999999998766543
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.88 E-value=2.3e-07 Score=76.47 Aligned_cols=122 Identities=16% Similarity=0.058 Sum_probs=94.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCCCCC-chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 006812 423 SMNEFETAISLLKRTLALLEKLPQAQH-SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLG 501 (630)
Q Consensus 423 ~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 501 (630)
..++...+...+++.+.- .+.. ....+...+|.++...|++++|...|+.++.. .++......+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 578888887777766553 1222 22456788999999999999999999999982 123333456778899
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812 502 AAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 563 (630)
.++...|++++|+..++... ..+....++..+|.+|...|++++|+..|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999996621 234445678889999999999999999999875
No 149
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.87 E-value=0.0002 Score=74.51 Aligned_cols=429 Identities=13% Similarity=0.014 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHh-hHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 114 VGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVM-GSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 114 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
..+.++.++...+ +..|....++.++..+.. +. .....++..+ ...+...+++..|++.++.........++
T Consensus 102 ~~~ll~~i~~~~~--~~~a~~~l~~~I~~~~~~--~~---~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 102 CQFLLARIYFKTN--PKAALKNLDKAIEDSETY--GH---SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHHHhcc--Cc---hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 3445677788775 444999999999888653 11 1233333333 33333347999999999999888554322
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHH--HHHHhcCHHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI--LEEDSRELGVANRDLAE--AFVAVLNFKEA 268 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A 268 (630)
. .....+....+.+....+..+++++..+++....... -+..++....++..+-. ++...|+++.+
T Consensus 175 ~----------~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~ 244 (608)
T PF10345_consen 175 P----------AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNS 244 (608)
T ss_pred H----------HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2 2334445556777788888899999999987766643 11112333334444433 45566777777
Q ss_pred HHHHHHHHHHHhhhcCCC-----------------------C-H----------HHHHHHHHHHHHHhccccHHHHHHHH
Q 006812 269 LPFGLKALEIHKKGLGHN-----------------------S-V----------EVAHDRRLLGVIYSGLEEHQKALEQN 314 (630)
Q Consensus 269 ~~~~~~al~~~~~~~~~~-----------------------~-~----------~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (630)
....++.-.......... . + -.+-+|..-|......+..++|.+++
T Consensus 245 ~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~ 324 (608)
T PF10345_consen 245 KQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFL 324 (608)
T ss_pred HHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHH
Confidence 776655444333221110 0 1 12333444466667777778999999
Q ss_pred HHHHHHHHHcC-C--C-hh----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-----hHHH
Q 006812 315 ELSQKVLKTWG-L--S-SE----------------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES-----ETRA 369 (630)
Q Consensus 315 ~~a~~~~~~~~-~--~-~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~ 369 (630)
+++++..+... . . +. .......++.+.+-.+++..|......+.....+.+ ...+
T Consensus 325 ~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 404 (608)
T PF10345_consen 325 EKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYP 404 (608)
T ss_pred HHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhH
Confidence 99999987765 1 1 10 122344567777889999999999998877654432 2346
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812 370 LVFISMGKALCNQEKFADAKRCLEIACGILDKK---ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ 446 (630)
Q Consensus 370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 446 (630)
..++..|..+...|+.+.|..+|.+..-..... .+....-..-+..++..++...+.-.....-+.+.++..+....
T Consensus 405 ~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~ 484 (608)
T PF10345_consen 405 LLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCS 484 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcccc
Confidence 678888999999999999999998544222111 11122233445566777777666544422222333332222111
Q ss_pred -CCCchhHHHH-HHHHHHH--HcCChhhHHHHHHHHHHHH-HHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006812 447 -AQHSEGSVSA-RIGWLLL--LTGKVPQAIPYLESAAERL-KESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAK 521 (630)
Q Consensus 447 -~~~~~~~~~~-~la~~~~--~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 521 (630)
........+. .+-..+. ..-...++...+.++++.. ... .+......++..++..++ .|+..+.......+.
T Consensus 485 ~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~--~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~ 561 (608)
T PF10345_consen 485 NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKL--GNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAF 561 (608)
T ss_pred CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 1111222222 2222222 2234458999999999988 443 234445556777888777 899999888888888
Q ss_pred HHHHHhcCCCCHHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 522 DIMDVSLGPHHADSIE---ACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 522 ~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
.+..+. ++..+... +-..++..+...|+.++|.....+...
T Consensus 562 ~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 562 QLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 777654 11122111 333567779999999999998877654
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=5.6e-08 Score=85.00 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812 409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488 (630)
Q Consensus 409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (630)
..+..+-.-|.-....++|.+|+..|.+||++ .+ .++..|.+.+.+|.++|.++.|++-.+.++.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-----~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------- 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL-----DP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------- 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence 34566677788889999999999999999997 22 23457799999999999999999999999984
Q ss_pred CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHH
Q 006812 489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYT 553 (630)
Q Consensus 489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 553 (630)
+|....+|..||.+|..+|++++|++.|++++++ +|+......+|..+-.+.++..
T Consensus 145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 5888999999999999999999999999999994 3555566667777666666655
No 151
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.86 E-value=0.0001 Score=74.81 Aligned_cols=265 Identities=14% Similarity=0.010 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 209 VHLELANVKTAMGRREEALEHLQKCLEIKELI-LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
.....++......++.+|..+..++....+.. ........+......|.+....|++++|+++.+.++...... ..
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~ 493 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AY 493 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cc
Confidence 33456788888999999999988876544321 001112335555566888889999999999999999876642 33
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHhhhcc
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE--EAINTLKGVVRQTEKES 365 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~~~~~~ 365 (630)
.....++..+|.+..-.|++++|..+..++.++.+..+.......+....+.+...+|+.. +....+...-.......
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3556778899999999999999999999999999998888888888888999999999433 33333333322221222
Q ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812 366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445 (630)
Q Consensus 366 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 445 (630)
+.........+.++...-+++.+..-....+++...... .+......+..++.++...|++++|...+.+.........
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~-~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTP-QPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhccc-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 221222233333333333466666666666655543322 2223334446899999999999999999999888765542
Q ss_pred CCCCchh--HHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812 446 QAQHSEG--SVSARIGWLLLLTGKVPQAIPYLESAA 479 (630)
Q Consensus 446 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al 479 (630)
.+... .++.........+|+..+|.....+..
T Consensus 653 --~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 653 --YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred --CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 33332 222333445567899999988877743
No 152
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=5e-08 Score=89.61 Aligned_cols=260 Identities=17% Similarity=0.097 Sum_probs=159.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 006812 215 NVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDR 294 (630)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 294 (630)
.-++..|+|..++.-++. . ..+.+........+.++|..+|+++..+.-... ..+|. ..+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~-~-------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av 69 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASL-K-------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAV 69 (290)
T ss_dssp HHHHCTT-HHHHCHHHHC-H-------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHH
T ss_pred HHHHHhhhHHHHHHHhhc-c-------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHH
Confidence 345678999988865541 1 123334456677788899999988765533211 12222 2334
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812 295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS--SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVF 372 (630)
Q Consensus 295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 372 (630)
..++..+...++.+.++..++. ..... ..........|.++...|++++|++.+.+. .+ ....
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~------~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~----lE~~ 134 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKE------LLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GS----LELL 134 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHH------CCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TC----HHHH
T ss_pred HHHHHHHhCccchHHHHHHHHH------HHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc----ccHH
Confidence 5566666554555555443321 11112 223445666788888999999999888653 11 2355
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812 373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN--EFETAISLLKRTLALLEKLPQAQHS 450 (630)
Q Consensus 373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 450 (630)
.....++...++++.|.+.++.+.++. .+...+....+++....| ++.+|...|++..+ ...+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~--------eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-------~~~~ 199 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQID--------EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-------KFGS 199 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCS--------CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-------CS--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-------ccCC
Confidence 566788999999999999888764432 122222223333444444 68899999988533 2223
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHHHhcC
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS-AAQVFAFAKDIMDVSLG 529 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~~~~~~ 529 (630)
.+.+++.++.++..+|+|++|.+.+++++. .+|....++.+++.+....|+..+ +.+++.+.... .
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~ 266 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----N 266 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----T
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----C
Confidence 456789999999999999999999999875 456677899999999999999844 55565554432 3
Q ss_pred CCCHHHH
Q 006812 530 PHHADSI 536 (630)
Q Consensus 530 ~~~~~~~ 536 (630)
|.||.+.
T Consensus 267 p~h~~~~ 273 (290)
T PF04733_consen 267 PNHPLVK 273 (290)
T ss_dssp TTSHHHH
T ss_pred CCChHHH
Confidence 4566543
No 153
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.2e-05 Score=67.53 Aligned_cols=196 Identities=16% Similarity=0.149 Sum_probs=130.2
Q ss_pred hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH
Q 006812 169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSREL 248 (630)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (630)
-.+++++|.++|.++-.+ |....+|+.|=..|.++-++..+. .+..+.
T Consensus 26 g~~k~eeAadl~~~Aan~------------------------------yklaK~w~~AG~aflkaA~~h~k~--~skhDa 73 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANM------------------------------YKLAKNWSAAGDAFLKAADLHLKA--GSKHDA 73 (288)
T ss_pred CCcchHHHHHHHHHHHHH------------------------------HHHHHhHHHHHHHHHHHHHHHHhc--CCchhH
Confidence 345677777777666554 333444555555555555555443 333445
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHcCCC
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL-EEHQKALEQNELSQKVLKTWGLS 327 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~ 327 (630)
+.+|...+.+|.+. +.++|..+++++++++.... .....+..+..+|.+|..- .++++|+.+|+++-+..+.-...
T Consensus 74 at~YveA~~cykk~-~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 74 ATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred HHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 66677667776554 88999999999999887643 2234455566788888765 89999999999999887665444
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET---RALVFISMGKALCNQEKFADAKRCLEIACGIL 399 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 399 (630)
......+...+..-...++|.+|+..|+++....-.++.. .-..+..-|.++.-..+.-.+...+++..++.
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 5555667777888889999999999999987755443321 12234455666666677666666666554443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.80 E-value=6.3e-08 Score=77.34 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 532 (630)
.+++.+|..+...|++++|+..|++++.. .++++....+++.+|.++...|++++|+.+|++++... +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46789999999999999999999999873 23445556788999999999999999999999998753 344
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 533 ADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 533 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
+....++..+|.++...|++++|..+++++++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 44567899999999999999999999999998743
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.76 E-value=3e-08 Score=72.78 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=66.4
Q ss_pred HcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006812 464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS 543 (630)
Q Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 543 (630)
.+|++++|+.+++++++.. +..+ ....+..+|.+|+..|++++|+..+++ .... +......+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 3689999999999999853 2122 555777899999999999999999998 4422 34456777889
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 006812 544 KAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~a 562 (630)
.++..+|++++|++.++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.75 E-value=2e-07 Score=74.37 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
..++.+|..+...|++++|+..|.+++... +.++ ...++..+|.++...|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 567889999999999999999999998752 2222 2457789999999999999999999999973 2455
Q ss_pred ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
+....++..+|.++...|++++|+.++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 556778999999999999999999999999985
No 157
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=7.5e-07 Score=83.37 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK 489 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (630)
...+.+..+..+...|++++|+..++..+.. . +.+...+...+.++...++..+|.+.+++++..
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~----P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-------- 369 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA---Q----PDNPYYLELAGDILLEANKAKEAIERLKKALAL-------- 369 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence 3467788888999999999999999986553 2 123456678899999999999999999999983
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
.|.......++|.+|...|++.+|+..+++.+. +.|+....|..||..|..+|+..+|...+.+....
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~---- 437 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL---- 437 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh----
Confidence 455566788999999999999999999999877 67788889999999999999999998888777653
Q ss_pred CCCchhHHHHHHHHHHHHHHHh
Q 006812 570 GPSAQDELREARRLLEQLKIKA 591 (630)
Q Consensus 570 ~~~~~~~~~~A~~~~~~~~~~~ 591 (630)
.|.+++|+..+....++.
T Consensus 438 ----~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 438 ----AGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ----CCCHHHHHHHHHHHHHhc
Confidence 366777777777766654
No 158
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.72 E-value=0.00032 Score=71.37 Aligned_cols=330 Identities=14% Similarity=0.053 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (630)
...+..-+..+...|...+|+++.-.| .+....+..+.+.+.-....++..--.. .++..+...-..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA---------~d~~~aa~lle~~~~~L~~~~~lsll~~----~~~~lP~~~l~~ 413 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA---------GDPEMAADLLEQLEWQLFNGSELSLLLA----WLKALPAELLAS 413 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC---------CCHHHHHHHHHhhhhhhhcccchHHHHH----HHHhCCHHHHhh
Confidence 344555566667777777777764432 2222223334444444444444332221 111111100012
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS---SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
+|.... ..+.......++.+|.....++...++..+.. ...+...--.|.+....|++++|+++.+.++...+.
T Consensus 414 ~P~Lvl---l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 414 TPRLVL---LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred CchHHH---HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 333222 23666677889999998888877765553222 223344445578888999999999999999998877
Q ss_pred cc-hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 364 ES-ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE 442 (630)
Q Consensus 364 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 442 (630)
+. .....++..+|.+..-.|++++|..+...+.++...... ......+....+.++..+|+...|. -.++.....
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~ 566 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--YHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIR 566 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHH
Confidence 54 344667888999999999999999999999998876542 2334455666788899999433332 222222221
Q ss_pred hCCCCCCch----hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH
Q 006812 443 KLPQAQHSE----GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA 518 (630)
Q Consensus 443 ~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 518 (630)
.......+. ..+...+...+.+ ++.+..-....+++.... .+........+..|+.++...|++++|...+.
T Consensus 567 ~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~ 642 (894)
T COG2909 567 EQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLD 642 (894)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111111111 1222333333333 666666666666643322 11111222233589999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812 519 FAKDIMDVSLGPHHADSI-EACQNLSKAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 519 ~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 562 (630)
+...+....- .+++.. .++.........+|++.+|.....+.
T Consensus 643 ~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 643 ELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 9888765421 233333 34444455567789999998888773
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.71 E-value=7.1e-07 Score=69.07 Aligned_cols=101 Identities=25% Similarity=0.239 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
.+.+.+|.++-..|+.++|+.+|++++.. +...+ ...++..+|..+...|++++|+..+++++.-+ ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46788999999999999999999999884 22222 25678999999999999999999999998721 222
Q ss_pred ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
+........++.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23555667788999999999999999988775
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.70 E-value=2.2e-07 Score=68.23 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Q 006812 344 LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES 423 (630)
Q Consensus 344 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 423 (630)
+|++++|+.+++++++..+.++ ....+..+|.++...|++++|+.++++ .... +........+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHHHHHH
Confidence 5778888888888887666432 244666688888888888888888877 3332 2334555666888888
Q ss_pred cCCHHHHHHHHHHH
Q 006812 424 MNEFETAISLLKRT 437 (630)
Q Consensus 424 ~g~~~~A~~~~~~a 437 (630)
+|++++|++.++++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 88888888888764
No 161
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.9e-05 Score=66.91 Aligned_cols=273 Identities=16% Similarity=0.132 Sum_probs=163.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812 257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEID 336 (630)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 336 (630)
.-++..|+|..++..-++.-.. . ........+...|..+|++...+.-... +. .....+...
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~-------~--~~~e~d~y~~raylAlg~~~~~~~eI~~--------~~-~~~lqAvr~ 77 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS-------K--TDVELDVYMYRAYLALGQYQIVISEIKE--------GK-ATPLQAVRL 77 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc-------c--chhHHHHHHHHHHHHccccccccccccc--------cc-CChHHHHHH
Confidence 3456678888777655443211 1 2223344567777778877654432211 11 112223333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 006812 337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSE 416 (630)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (630)
++.....-++.++-+.-..+.+... ...........-|.+|...|++++|.+.......+ .+...
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~--~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al 142 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADS--TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAAL 142 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhh--ccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHH
Confidence 4444433444343333333322211 11111224445578899999999999887763222 22333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFG 492 (630)
Q Consensus 417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (630)
--.++.++.+++-|...++++.++.+. .++..||..|.+ .+++.+|.-+|++.-+ ..+.
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ided---------~tLtQLA~awv~la~ggek~qdAfyifeE~s~--------k~~~ 205 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDED---------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--------KTPP 205 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchH---------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--------ccCC
Confidence 345677888899999888888776221 256667766655 3456777777765543 3456
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 493 VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
+...++.++.|...+|+|++|...++.++. ..+...+++.|+..+-...|...++.+-+-.- .....+.
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q---Lk~~~p~ 274 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLSQ---LKLSHPE 274 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH---HHhcCCc
Confidence 677889999999999999999999999998 44555688899999888999887776544332 2333333
Q ss_pred c--hhHHHHHHHHHHHHHHH
Q 006812 573 A--QDELREARRLLEQLKIK 590 (630)
Q Consensus 573 ~--~~~~~~A~~~~~~~~~~ 590 (630)
+ ..++.+...-|+++...
T Consensus 275 h~~vk~~~ekeaeFDrl~~q 294 (299)
T KOG3081|consen 275 HPFVKHLNEKEAEFDRLVLQ 294 (299)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 2 24556666666665543
No 162
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=2.3e-06 Score=80.27 Aligned_cols=149 Identities=18% Similarity=0.011 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
...+..+..++..|++++|+..+...+ .+.|+....+...+.++...|+..+|.+.+++++...+. .
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~--------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-----~ 373 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLI--------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-----S 373 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----c
Confidence 566778888888999999998888755 333444566777888899999999999999998886442 2
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET 367 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 367 (630)
.....++|..+.+.|++.+|+..++.... .+|.....|..||..|..+|+..+|...+
T Consensus 374 ---~~l~~~~a~all~~g~~~eai~~L~~~~~------~~p~dp~~w~~LAqay~~~g~~~~a~~A~------------- 431 (484)
T COG4783 374 ---PLLQLNLAQALLKGGKPQEAIRILNRYLF------NDPEDPNGWDLLAQAYAELGNRAEALLAR------------- 431 (484)
T ss_pred ---cHHHHHHHHHHHhcCChHHHHHHHHHHhh------cCCCCchHHHHHHHHHHHhCchHHHHHHH-------------
Confidence 34456778999999999988887765444 35777888888888888888877655444
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGIL 399 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 399 (630)
+..|...|++++|+..+..+.+..
T Consensus 432 --------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 432 --------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 334455666666666666665544
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.67 E-value=9.3e-08 Score=67.24 Aligned_cols=64 Identities=30% Similarity=0.427 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 006812 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG-SYTLAIEFQQRAIDA 565 (630)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 565 (630)
+.++..+|.++...|++++|+.+|++++++ +|+...++.++|.+|..+| ++++|++.+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 568899999999999999999999999994 4777789999999999999 799999999999976
No 164
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.2e-05 Score=67.56 Aligned_cols=196 Identities=17% Similarity=0.073 Sum_probs=121.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhH
Q 006812 127 GDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIM 206 (630)
Q Consensus 127 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 206 (630)
+.+++|.++|.++-.++.- ..+|+.|=..|.++-++..+..... ..
T Consensus 28 ~k~eeAadl~~~Aan~ykl------------------------aK~w~~AG~aflkaA~~h~k~~skh----------Da 73 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKL------------------------AKNWSAAGDAFLKAADLHLKAGSKH----------DA 73 (288)
T ss_pred cchHHHHHHHHHHHHHHHH------------------------HHhHHHHHHHHHHHHHHHHhcCCch----------hH
Confidence 4788888888887655532 2233333334444444333322211 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhcCC
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV-LNFKEALPFGLKALEIHKKGLGH 285 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~ 285 (630)
+..|...+.+|. .++.++|+.+++++++++... .....-+.-+..+|.+|... .++++|+.+|+++-+.+..- .
T Consensus 74 at~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--e 148 (288)
T KOG1586|consen 74 ATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--E 148 (288)
T ss_pred HHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--h
Confidence 344444455554 448888999999998888665 33344466677889999776 89999999999999987732 1
Q ss_pred CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812 286 NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS---SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE 362 (630)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 362 (630)
.....-.++...+..-...++|.+|+..|++..... ++.+ ...-.-++.-|.+++...+.-.+...+++-.+..|
T Consensus 149 s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s--~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS--LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 222333556667777888999999999998765431 2222 22223344556777776776666666665555444
Q ss_pred h
Q 006812 363 K 363 (630)
Q Consensus 363 ~ 363 (630)
.
T Consensus 227 ~ 227 (288)
T KOG1586|consen 227 A 227 (288)
T ss_pred c
Confidence 3
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.65 E-value=2.8e-07 Score=88.23 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 006812 455 SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD 534 (630)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 534 (630)
+...|..++..|+|++|+.+|++++++ .|....++.++|.+|..+|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 456688889999999999999999983 4666778999999999999999999999999994 456
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 535 SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 535 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
...+++.+|.+|..+|++++|+..|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 66899999999999999999999999999764
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.64 E-value=5.3e-07 Score=86.31 Aligned_cols=113 Identities=13% Similarity=0.168 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812 414 YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV 493 (630)
Q Consensus 414 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 493 (630)
+...|...+..|++++|+.+|.+++.+ .+. ...++.++|.++...|++++|+..+++++.+ .|..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~ 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPN--NAELYADRAQANIKLGNFTEAVADANKAIEL--------DPSL 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCC
Confidence 445678888999999999999999986 222 3458899999999999999999999999984 3666
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM 549 (630)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 549 (630)
..+++.+|.++..+|++++|+..|++++.+. |....+...++.+...+
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--------P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGASLA--------PGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999853 33334555555554433
No 167
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=2.1e-05 Score=65.35 Aligned_cols=225 Identities=16% Similarity=0.039 Sum_probs=141.9
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
..+..++..|..|-..|-+.-|...|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai----------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc----------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 46667788888999999999999999999998 56667888999999999999999999999988
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (630)
++. |..-.+..+.|..++.-|+|.-|.+-+.+-..-. +++|-..- |.. +-...-+..+|...+
T Consensus 127 ELD--------p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-----~~DPfR~L-WLY---l~E~k~dP~~A~tnL 189 (297)
T COG4785 127 ELD--------PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-----PNDPFRSL-WLY---LNEQKLDPKQAKTNL 189 (297)
T ss_pred ccC--------CcchHHHhccceeeeecCchHhhHHHHHHHHhcC-----CCChHHHH-HHH---HHHhhCCHHHHHHHH
Confidence 543 4445677888999999999999998776654422 23332211 111 112233566665543
Q ss_pred HHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHHHHHhhccHHHHHH
Q 006812 315 ELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE---SETRALVFISMGKALCNQEKFADAKR 390 (630)
Q Consensus 315 ~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~ 390 (630)
.+- .+..... +....+-..+ |+..+ ...++++......+ ......+++.+|..+...|+.++|..
T Consensus 190 ~qR---~~~~d~e~WG~~iV~~yL-------gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 190 KQR---AEKSDKEQWGWNIVEFYL-------GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred HHH---HHhccHhhhhHHHHHHHH-------hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 321 1111111 2222222222 22211 12233333322211 23456789999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCH
Q 006812 391 CLEIACGILDKKETISPEEVADAYSEISMQYESMNEF 427 (630)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 427 (630)
.|+-++....-.. .+.--+...++.+...+.+.
T Consensus 259 LfKLaiannVynf----VE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 259 LFKLAVANNVYNF----VEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHHHHhHHHH----HHHHHHHHHHHHhccccchh
Confidence 9998876543221 23334555566555544433
No 168
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=8.6e-05 Score=69.62 Aligned_cols=253 Identities=11% Similarity=0.083 Sum_probs=149.7
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhH
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGR 189 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 189 (630)
+....+++.|.++++.. .+..|++.....+...+.. .. ...+..-...-..+....+-++|+.++.-.-.+...
T Consensus 98 ~~t~~~yn~aVi~yh~~-~~g~a~~~~~~lv~r~e~l--e~---~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~ 171 (696)
T KOG2471|consen 98 QGTVMDYNFAVIFYHHE-ENGSAMQLSSNLVSRTESL--ES---SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAE 171 (696)
T ss_pred cchHHhhhhheeeeeHh-hcchHHHhhhhHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33567788888888888 8999999888877666554 11 112222233445566667777887765433222111
Q ss_pred hhhc----CC--CCCCccchhhHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 006812 190 LEEE----GL--GGSVEDIKPIMH-----------AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVAN 252 (630)
Q Consensus 190 ~~~~----~~--~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 252 (630)
.... .. +....+..|..+ .+...-...+..+.+..-+..-.+.++.+. . +...++
T Consensus 172 ~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-----~---~s~~~l 243 (696)
T KOG2471|consen 172 KRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-----Q---DSSMAL 243 (696)
T ss_pred hhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-----C---CCcHHH
Confidence 1100 00 000001111111 111111222223333333322222222111 1 224566
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHc--CCC
Q 006812 253 RDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE--VAHDRRLLGVIYSGLEEHQKALEQNELSQK-VLKTW--GLS 327 (630)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~--~~~ 327 (630)
...+..++..|++.+|.+.+... .+.+...+...+. ....++++|.+++..|.|.-+..+|.+|++ ....+ |..
T Consensus 244 ~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~ 322 (696)
T KOG2471|consen 244 LLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLK 322 (696)
T ss_pred HHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 77788999999999999887543 2222222222232 334568999999999999999999999996 43332 211
Q ss_pred ---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh
Q 006812 328 ---------SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN 381 (630)
Q Consensus 328 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 381 (630)
......+++.|..|...|+.-.|.+.|.++...+..++. .|..|+.++..
T Consensus 323 ~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr----lWLRlAEcCim 381 (696)
T KOG2471|consen 323 PAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR----LWLRLAECCIM 381 (696)
T ss_pred CCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHH
Confidence 124567889999999999999999999999998877755 78888877754
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.61 E-value=7.7e-07 Score=80.22 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=88.9
Q ss_pred HHHHHHHHHH-HHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 453 SVSARIGWLL-LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 453 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
...+..+..+ ...|+|++|+..|+..+..+ |+++....+++.+|.+|+..|++++|+..|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4556666654 66799999999999999843 4455567899999999999999999999999999854 36
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
++...++++.+|.++..+|++++|...|+++++.++
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 777889999999999999999999999999987654
No 170
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00018 Score=62.30 Aligned_cols=250 Identities=14% Similarity=0.063 Sum_probs=153.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 006812 215 NVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDR 294 (630)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 294 (630)
+-++..|+|..++..-++.-. . +........+...|..+|++..-+.-... + ..+. ..+.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~-------~--~~~~e~d~y~~raylAlg~~~~~~~eI~~---------~-~~~~-lqAv 75 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSS-------S--KTDVELDVYMYRAYLALGQYQIVISEIKE---------G-KATP-LQAV 75 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcc-------c--cchhHHHHHHHHHHHHccccccccccccc---------c-cCCh-HHHH
Confidence 345567887777665544221 1 12234455677788888887654432211 1 1111 2223
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 006812 295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFIS 374 (630)
Q Consensus 295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 374 (630)
..++.....-++.++-+.-..+-+. ... ..........-|.+|...|++++|+........ ..+...
T Consensus 76 r~~a~~~~~e~~~~~~~~~l~E~~a--~~~--~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---------lE~~Al 142 (299)
T KOG3081|consen 76 RLLAEYLELESNKKSILASLYELVA--DST--DGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---------LEAAAL 142 (299)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHH--hhc--cchhHHHHHHhhHHhhcCCChHHHHHHHhccch---------HHHHHH
Confidence 3445555545554443332222111 111 112223444557889999999999998876322 113333
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLALLEKLPQAQHS 450 (630)
Q Consensus 375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 450 (630)
-..++.+..+++-|.+.+++..++.+. .++..||..+.. .++..+|.-+|++.- +...|
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~s-------~k~~~ 205 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELS-------EKTPP 205 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHh-------cccCC
Confidence 346777888999999999888776532 234444444433 334666666666543 33455
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
...+.+.++.+...+|+|++|...++.++. ..+....++.++..+-...|...++.+-+-.-+.
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 567889999999999999999999999998 4566677899999999999998887765544443
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.60 E-value=4.6e-07 Score=69.17 Aligned_cols=96 Identities=29% Similarity=0.386 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..++++++.+. |
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 5678999999999999999999999873 23344678899999999999999999999998842 3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
....++..+|.++...|++++|..++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33368899999999999999999999988764
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.7e-06 Score=79.46 Aligned_cols=139 Identities=17% Similarity=0.073 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc--------hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS--------EGSVSARIGWLLLLTGKVPQAIPYLESAAERL 482 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 482 (630)
+.....-|..|++.|+|..|...|++++.........+.. ...++.|++.++.++++|.+|+....++++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-- 285 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE-- 285 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--
Confidence 3445567889999999999999999999887644322211 134568899999999999999999999988
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 006812 483 KESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA-IEFQQR 561 (630)
Q Consensus 483 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 561 (630)
..|....+++.-|.++..+|+|+.|+..|++++++ .|....+...|..+-.+..++.+. .+.|.+
T Consensus 286 ------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 286 ------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred ------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778889999999999999999999999884 355555666666665554443333 555555
Q ss_pred HHHH
Q 006812 562 AIDA 565 (630)
Q Consensus 562 al~~ 565 (630)
++.-
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 5543
No 173
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=1.5e-05 Score=83.96 Aligned_cols=209 Identities=14% Similarity=0.092 Sum_probs=160.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK-ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI 405 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 405 (630)
+|+....|......+...++.++|.+..++++....- .......+|..+-++...-|.-+.-.+.|++|-+.+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------ 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------ 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc------
Confidence 5777778888888888999999999999999975521 222223344444444444455666678888887776
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812 406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES 485 (630)
Q Consensus 406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (630)
+-..++..|..+|...+++++|.++|+..++-+.+. ..+|...|..++.+.+-++|...+.+|+....+
T Consensus 1528 ---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk- 1596 (1710)
T KOG1070|consen 1528 ---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT-------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK- 1596 (1710)
T ss_pred ---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch-------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-
Confidence 333678889999999999999999999988865422 358899999999999999999999999985432
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
..........|.+-++.|+.+.+...|+..+. .+|...+.|.-....-.+.|+.+.+..+|++++..
T Consensus 1597 -----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1597 -----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred -----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 22345666788899999999999999998887 56777788888888889999999999999998743
No 174
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=9.4e-05 Score=78.21 Aligned_cols=210 Identities=16% Similarity=0.080 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
+|..+..|...-..+...++.++|.+.+++|+....-.. .......|..+-++...-|.-+.-.+.|+++.+....
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE-eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~--- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE-EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA--- 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch-hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch---
Confidence 444445555556677889999999999999988642111 1223333444444444446666777788887775422
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812 367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ 446 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 446 (630)
..+|..|..+|...+++++|.++++..++-+. ....+|...|..++.+++-+.|...+.+|+.-.++
T Consensus 1530 --~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk--- 1596 (1710)
T KOG1070|consen 1530 --YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK--- 1596 (1710)
T ss_pred --HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch---
Confidence 34788999999999999999999999888774 34478999999999999999999999999987544
Q ss_pred CCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
+.........|.+-++.|+.+.+..+|+..+. .+|...+.|.-+...-...|+.+.+...|++++.+
T Consensus 1597 --~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1597 --QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred --hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 22345677889999999999999999999887 56777778888888889999999999999999885
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.56 E-value=5.8e-07 Score=63.17 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 006812 291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG-KFEEAINTLKGVVRQ 360 (630)
Q Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 360 (630)
+..+..+|.++...|++++|+.+|++++++ +|....++.++|.++..+| ++++|+..++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 345666677777777777777777777766 5666666677777777776 567777777666654
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.53 E-value=3.6e-05 Score=66.78 Aligned_cols=175 Identities=15% Similarity=0.088 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (630)
+..++.-|......|+|++|+..|+...... +..|..-.+...++.++++.+++++|+...++-+...+ .
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP-----~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP-----T 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----C
Confidence 4567788999999999999999999866322 44566678899999999999999999999999998877 5
Q ss_pred CHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHcCCChhHH--------------HHHHHHHHHHHHcCCH
Q 006812 287 SVEVAHDRRLLGVIYSGL-----EEHQKALEQNELSQKVLKTWGLSSELL--------------RAEIDAANMQIALGKF 347 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~la~~~~~~g~~ 347 (630)
|++...+++..|.++... .+...+...+...-.++....+++-.. .--..+|..|.+.|.+
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 777777788888877653 455566666666666666666653221 2223578999999999
Q ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006812 348 EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCL 392 (630)
Q Consensus 348 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 392 (630)
..|+.-++.+++..+.. .....++..+..+|..+|-.++|...-
T Consensus 184 ~AA~nR~~~v~e~y~~t-~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 184 VAAINRFEEVLENYPDT-SAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999999976543 333557888889999999999887653
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.4e-06 Score=76.24 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH-------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV-------EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL 321 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 321 (630)
+.....-|..|++.|+|..|...|++++.......+.+.. ....++.|++.++.++++|.+|+.+.++++.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 3445667999999999999999999999887643322221 23467889999999999999999999999887
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH-HHHHHHHH
Q 006812 322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA-KRCLEIAC 396 (630)
Q Consensus 322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~ 396 (630)
.+.+..+++..|.++..+|+|+.|+..|+++++..+.+.. +...+..+..+..++.+. .+.|....
T Consensus 287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka----~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA----ARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999998777644 444444444443333332 34444433
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.49 E-value=6.6e-07 Score=61.91 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=55.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 499 NLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
.+|..+...|++++|+..|++++. .+|+...++..+|.++..+|++++|+.+|++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 578999999999999999999998 678899999999999999999999999999999764
No 179
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.47 E-value=3.6e-05 Score=66.30 Aligned_cols=238 Identities=11% Similarity=0.085 Sum_probs=159.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
++++|+..|++++++-.+. ..| -..++-.+..+++++|+|++-++.|.+.+...+.....+ ...
T Consensus 42 ~p~~Al~sF~kVlelEgEK---geW---GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN------ySE---- 105 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEK---GEW---GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN------YSE---- 105 (440)
T ss_pred CHHHHHHHHHHHHhccccc---chh---HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc------ccH----
Confidence 8999999999999887442 222 345677889999999999999999999998877765544 001
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
.+.+.+-..-....+.+--..+|+..++..+.. .+......+-..||.+|+..|+|.+-.+.+.+.-.-+..-.|.+.
T Consensus 106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 106 KSINSILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 111222222223344444455666666555443 333333455667999999999999998888887776665444433
Q ss_pred H----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 288 V----EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 288 ~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
. ....+|..-...|..+.+-.+-...|++++.+-.....+.-.....-.=|.++.+.|+|++|-.-|-++.+....
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 2 455566666778888888888888999998875554443323333344477888999999999999888876654
Q ss_pred cc-h--HHHHHHHHHHHHHHhhc
Q 006812 364 ES-E--TRALVFISMGKALCNQE 383 (630)
Q Consensus 364 ~~-~--~~~~~~~~la~~~~~~~ 383 (630)
.. + ....-|..++..+.+.|
T Consensus 264 sGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 264 SGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cCCcchhHHHHHHHHHHHHHHcC
Confidence 32 2 22444556666666544
No 180
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.47 E-value=1.1e-06 Score=66.93 Aligned_cols=96 Identities=30% Similarity=0.392 Sum_probs=79.9
Q ss_pred HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE 238 (630)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 238 (630)
++..+|.++...|++++|+..+++++... +....++..+|.++...|++++|+.++++++.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD----------------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC----------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46779999999999999999999998871 11125677899999999999999999999886432
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812 239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (630)
....++..+|.++...|++++|..++.++++.
T Consensus 66 --------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 --------DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred --------cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999988764
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.46 E-value=2.8e-06 Score=76.66 Aligned_cols=103 Identities=17% Similarity=0.044 Sum_probs=84.1
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812 208 AVHLELANVK-TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286 (630)
Q Consensus 208 ~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (630)
...+..+..+ ...|+|++|+..|++.++.. ++++....+++.+|.+|+..|++++|+..|++++..++ +
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-----~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-----K 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----C
Confidence 3445566654 56799999999999988665 45555678899999999999999999999999998766 5
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 320 (630)
++....++..+|.++...|++++|...|++.++.
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677788888999998899999999888876654
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=98.45 E-value=4e-06 Score=67.44 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
....+..|.-++..|++++|..+|+-..- + ++.....+..||.++..+++|++|+..|..+..+.. +
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-----~ 103 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCI-----Y---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-----N 103 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----h---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----C
Confidence 34567888889999999999999987665 2 244455788999999999999999999999987542 3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHh
Q 006812 532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKA 591 (630)
Q Consensus 532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 591 (630)
+| ...+..|.||..+|+.+.|+..|+.++. .+....-.++|..+++.+.+..
T Consensus 104 dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~-----~~~~~~l~~~A~~~L~~l~~~~ 155 (165)
T PRK15331 104 DY---RPVFFTGQCQLLMRKAAKARQCFELVNE-----RTEDESLRAKALVYLEALKTAE 155 (165)
T ss_pred CC---CccchHHHHHHHhCCHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHccc
Confidence 33 4678899999999999999999999987 3445555667777777665443
No 183
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=1.2e-05 Score=66.74 Aligned_cols=228 Identities=13% Similarity=0.033 Sum_probs=138.6
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
+.+.+..++..|..|-..| -..-|.--|.+++.+. |..+.+++.+|..+...|+|+.|.+.|+..+++
T Consensus 61 ~eeRA~l~fERGvlYDSlG-L~~LAR~DftQaLai~----------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLG-LRALARNDFSQALAIR----------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhh-HHHHHhhhhhhhhhcC----------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-
Confidence 3455677888888888888 8888888899998876 345788899999999999999999999999988
Q ss_pred hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812 188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE 267 (630)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (630)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+. ++++|-..- |.. +-...-+..+
T Consensus 129 ---------------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~L-WLY---l~E~k~dP~~ 184 (297)
T COG4785 129 ---------------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSL-WLY---LNEQKLDPKQ 184 (297)
T ss_pred ---------------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHH-HHH---HHHhhCCHHH
Confidence 4445566778899999999999998887764421 244442221 111 1122335666
Q ss_pred HHHHHHH-HHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcC
Q 006812 268 ALPFGLK-ALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL-SSELLRAEIDAANMQIALG 345 (630)
Q Consensus 268 A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g 345 (630)
|...+.+ +... +..... + ++...| .|+..+ ...++++..-...... ......+++.+|..|...|
T Consensus 185 A~tnL~qR~~~~-------d~e~WG--~-~iV~~y--LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 185 AKTNLKQRAEKS-------DKEQWG--W-NIVEFY--LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHHHHHHHhc-------cHhhhh--H-HHHHHH--HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 6544332 2221 111111 1 111222 222211 1122222221110000 1345678899999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812 346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK 384 (630)
Q Consensus 346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 384 (630)
+.++|..+|+-++...--+-...-.++..++.+...+.+
T Consensus 252 ~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~ 290 (297)
T COG4785 252 DLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDD 290 (297)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccch
Confidence 999999999988863322222223344455554444433
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.42 E-value=1.3e-06 Score=60.34 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=54.5
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 457 RIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
.+|..+...|++++|+..|+++++ .+|....++..+|.++..+|++++|+.+|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578999999999999999999997 66889999999999999999999999999999985
No 185
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.42 E-value=0.00049 Score=63.70 Aligned_cols=254 Identities=15% Similarity=0.035 Sum_probs=144.2
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHH---cCCC-----hh
Q 006812 259 FVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE-EHQKALEQNELSQKVLKT---WGLS-----SE 329 (630)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~---~~~~-----~~ 329 (630)
...+|+++.|..++.++-.......+......+..+++.|......+ +++.|..+++++.+++.. .... ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999887753222233477888999999999999 999999999999999754 2111 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
...++..++.+|...+.++...+ ...+++......+..+..+..--.+..+.++.+++.+.+.+.+.-..-.. ..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e----~~ 157 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE----SN 157 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc----ch
Confidence 45677889999999888764433 33333333333222222333333334447888888888888766542110 01
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc--CChhhH--HHHHHHHHHHHHHh
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT--GKVPQA--IPYLESAAERLKES 485 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~~~~~~ 485 (630)
...+...+-. +. ......|...+...+...-.. ..++ .... .-+-.++... ++.... ++.....++...+.
T Consensus 158 ~~~~l~~i~~-l~-~~~~~~a~~~ld~~l~~r~~~-~~~~-~~e~-~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~ 232 (278)
T PF08631_consen 158 FDSILHHIKQ-LA-EKSPELAAFCLDYLLLNRFKS-SEDQ-WLEK-LVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS 232 (278)
T ss_pred HHHHHHHHHH-HH-hhCcHHHHHHHHHHHHHHhCC-ChhH-HHHH-HHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH
Confidence 1111111111 11 233456666666655432111 1110 1111 1122222222 222233 44444444433333
Q ss_pred cCCC-CccH----HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 486 FGPK-HFGV----GYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 486 ~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
.+.. .+.. ...+.+.|...++.++|++|+.+|+-++.
T Consensus 233 ~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 233 LGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2222 2222 23455778899999999999999998764
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.39 E-value=3.3e-06 Score=73.83 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 006812 455 SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD 534 (630)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 534 (630)
.++.|.-++..|+|..|...|..-++- .|+.+....++++||.+++.+|+|++|...|..+..-+ +.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 688888899999999999999998884 36677888899999999999999999999999998843 35666
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 535 SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 535 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
..++++.||.+...+|+.++|...|+++++-++.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 6789999999999999999999999999876643
No 187
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.38 E-value=0.0012 Score=61.13 Aligned_cols=252 Identities=15% Similarity=0.138 Sum_probs=142.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhh--cCCCC----HHH
Q 006812 218 TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL-NFKEALPFGLKALEIHKKG--LGHNS----VEV 290 (630)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~--~~~~~----~~~ 290 (630)
..+|+++.|..++.++-.+...........++..+++.|......+ +++.|..+++++.++.... ....+ ...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4689999999999998776643222333467889999999999999 9999999999999997541 11122 245
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812 291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVL-KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA 369 (630)
Q Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 369 (630)
..++..++.+|...+.++...+.. .+++.+ ...++.+..... --.+....++.+.+.+.+.+++....-......
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~-~~l~~l~~e~~~~~~~~~L---~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKAL-NALRLLESEYGNKPEVFLL---KLEILLKSFDEEEYEEILMRMIRSVDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHH-HHHHHHHHhCCCCcHHHHH---HHHHHhccCChhHHHHHHHHHHHhcccccchHH
Confidence 677889999999998876544422 223333 233433332222 222233378899999999998875542211111
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH-HHHHHHHHHHHHHHc--CCHHHH--HHHHHHHHHHHHhC
Q 006812 370 LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE-VADAYSEISMQYESM--NEFETA--ISLLKRTLALLEKL 444 (630)
Q Consensus 370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~--g~~~~A--~~~~~~al~~~~~~ 444 (630)
.+...+-. +. ......|...+...+...-... ++ ..... .+..++... ++.... ++.....++.....
T Consensus 160 ~~l~~i~~-l~-~~~~~~a~~~ld~~l~~r~~~~----~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~ 232 (278)
T PF08631_consen 160 SILHHIKQ-LA-EKSPELAAFCLDYLLLNRFKSS----EDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS 232 (278)
T ss_pred HHHHHHHH-HH-hhCcHHHHHHHHHHHHHHhCCC----hhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHHHHHH
Confidence 11111111 11 1233456666665543322111 12 22111 112222222 222222 33344444432222
Q ss_pred CCC-CCchh-----HHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 445 PQA-QHSEG-----SVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 445 ~~~-~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
.+. -.+.. ..+.+.|.-.++.++|++|..+|+-++.
T Consensus 233 ~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 233 LGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 221 11221 2346778889999999999999997764
No 188
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.38 E-value=0.00011 Score=63.46 Aligned_cols=239 Identities=15% Similarity=0.062 Sum_probs=164.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 006812 220 MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGV 299 (630)
Q Consensus 220 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 299 (630)
..+.++|+..|++++++-. .....-..++..+..+++.+|+|++-.+.|.+.+...+.....+..+. +.+.+-.
T Consensus 40 e~~p~~Al~sF~kVlelEg----EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEG----EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhccc----ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHH
Confidence 3478999999999997652 233344678888999999999999999999999988776544443321 2223333
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--------chHHHHH
Q 006812 300 IYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--------SETRALV 371 (630)
Q Consensus 300 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--------~~~~~~~ 371 (630)
.-....+.+--..+|+..+..++...+......+...+|.+|+..++|.+-...+++.-..+... ......+
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 33344555556677777777777766666666677789999999999998888888776655432 1223445
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812 372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE 451 (630)
Q Consensus 372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 451 (630)
|..-.++|..+.+-..-...|++++.+-... +.+.-...+...-|..+.+.|+|++|-.-|-+|..-+.....+....
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAI--PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRtt 271 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAI--PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 271 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccC--CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhH
Confidence 5555678888888888888999988775433 23222333444557788999999999998888887665554333322
Q ss_pred hHHHHHHHHHHHHcC
Q 006812 452 GSVSARIGWLLLLTG 466 (630)
Q Consensus 452 ~~~~~~la~~~~~~g 466 (630)
..-|..|+..+.+.|
T Consensus 272 CLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHcC
Confidence 334567777777765
No 189
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=2.8e-05 Score=72.76 Aligned_cols=267 Identities=14% Similarity=0.057 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCCh
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS 328 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 328 (630)
...+++.|.+|+....+..|++.....+...+.. .....+......-..+....+.++|+.++.-..++.......+
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~l---e~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~ 176 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESL---ESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL 176 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5677888999999999999998887776655432 1122233333445556666677777776654333322111110
Q ss_pred h--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 329 E--LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 329 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
. ... +......+-...|..-+--+ +.. ..+...-...|....+..-+..-.+-++.+..
T Consensus 177 ~gn~~~-----~nn~~kt~s~~aAe~s~~~a------~~k--~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~------ 237 (696)
T KOG2471|consen 177 VGNHIP-----ANNLLKTLSPSAAERSFSTA------DLK--LELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ------ 237 (696)
T ss_pred cccccc-----hhhhcccCCcchhcccchhh------ccc--hhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC------
Confidence 0 000 01111112222221111100 000 01111122233333444444433333333321
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch---hHHHHHHHHHHHHcCChhhHHHHHHHHHH-HH
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE---GSVSARIGWLLLLTGKVPQAIPYLESAAE-RL 482 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~ 482 (630)
+.+.++...+..++..|++.+|.+.+... .+.+...+...|. ...++++|.++++.|.|.-+..+|.+|++ ..
T Consensus 238 --~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 238 --DSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred --CCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 33456677788899999999999887653 2323322222222 23458999999999999999999999996 33
Q ss_pred HHhcCC---------CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006812 483 KESFGP---------KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS 548 (630)
Q Consensus 483 ~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 548 (630)
.+.-.. .......++++.|..|...|++-.|.++|.+++..+.. +| ..|..||.+...
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----nP---rlWLRlAEcCim 381 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----NP---RLWLRLAECCIM 381 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----Cc---HHHHHHHHHHHH
Confidence 332111 11234567899999999999999999999999998753 34 678888888643
No 190
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=1.2e-05 Score=76.59 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=100.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHH
Q 006812 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYI 496 (630)
Q Consensus 417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 496 (630)
+-.++...++++.|+.++++..+. .|. +...++.++...++..+|+..+.+++. ..|.....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~L 236 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE--VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSEL 236 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHHH
Confidence 344556678899999998886552 232 556789999999999999999999996 45666888
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 562 (630)
+...+..+...++++.|+...++++. ..|....+|+.|+.+|...|++++|+..+..+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~--------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVE--------LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 89999999999999999999999999 45888899999999999999999999766543
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.32 E-value=0.0025 Score=58.47 Aligned_cols=299 Identities=14% Similarity=0.046 Sum_probs=193.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCC
Q 006812 118 IALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGG 197 (630)
Q Consensus 118 ~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 197 (630)
.|.+....| |-..|...-.++-++... +. .+.....-++.-.-.|+++.|.+-|+-.+..
T Consensus 90 tGliAagAG-da~lARkmt~~~~~llss----Dq----epLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----------- 149 (531)
T COG3898 90 TGLIAAGAG-DASLARKMTARASKLLSS----DQ----EPLIHLLEAQAALLEGDYEDARKKFEAMLDD----------- 149 (531)
T ss_pred hhhhhhccC-chHHHHHHHHHHHhhhhc----cc----hHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----------
Confidence 343333444 888898888887766533 21 1223334566777889999999999877653
Q ss_pred CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006812 198 SVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALE 277 (630)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (630)
.......+..|-.--...|..+.|..+-+.+-...+. ...+....-...+..|+++.|+++.+....
T Consensus 150 -----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~--------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 150 -----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ--------LPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred -----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC--------CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1111112222333345789999999999988755432 344555555667889999999999987665
Q ss_pred HHhhhcCCCCH--HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812 278 IHKKGLGHNSV--EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLK 355 (630)
Q Consensus 278 ~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (630)
... .+++.. ..+..+..-+.... ..+...|...-.++.++ .|+.+..-..-+..++..|+..++-.+++
T Consensus 217 ~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 217 AKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL------APDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 332 122222 22222222222222 23567777776666665 67777777778899999999999999999
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812 356 GVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLK 435 (630)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 435 (630)
.+.+..+ ++.. +..|....--+.++.-++++..+..- .++........+..-..-|++..|..--+
T Consensus 288 ~aWK~eP--HP~i-------a~lY~~ar~gdta~dRlkRa~~L~sl-----k~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 288 TAWKAEP--HPDI-------ALLYVRARSGDTALDRLKRAKKLESL-----KPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred HHHhcCC--ChHH-------HHHHHHhcCCCcHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 8887432 3332 33344333334455555555444321 14566777888888899999999988777
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHHHc-CChhhHHHHHHHHHH
Q 006812 436 RTLALLEKLPQAQHSEGSVSARIGWLLLLT-GKVPQAIPYLESAAE 480 (630)
Q Consensus 436 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 480 (630)
.+..+ .|...++..|+.+-... |+-.++..++-+++.
T Consensus 354 aa~r~--------~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 354 AAARE--------APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhhh--------CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 77664 33445788888887765 999999999999886
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.32 E-value=0.0021 Score=64.16 Aligned_cols=180 Identities=14% Similarity=0.038 Sum_probs=121.6
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHcCCC-hhH---HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812 300 IYSGLEEHQKALEQNELSQKVLKTWGLS-SEL---LRAEIDAANMQI----ALGKFEEAINTLKGVVRQTEKESETRALV 371 (630)
Q Consensus 300 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~---~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 371 (630)
+.--.||-+.++..+.++.+- .+.. +-. ...|+.....+. .....+.|.+++......+|+. +..
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~---~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s----~lf 269 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKS---ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS----ALF 269 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhcc---CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc----HHH
Confidence 333468999999988876541 1111 111 111112111122 2345677777777777765543 557
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812 372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE 451 (630)
Q Consensus 372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 451 (630)
+...|+++...|+.++|++.+++++....... .-...++..++.++..+++|++|..++.+..+. .....
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSk 339 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSK 339 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHH
Confidence 77889999999999999999998875332221 233467889999999999999999999988773 22233
Q ss_pred hHHHHHHHHHHHHcCCh-------hhHHHHHHHHHHHHHHhcCCCCccHHHH
Q 006812 452 GSVSARIGWLLLLTGKV-------PQAIPYLESAAERLKESFGPKHFGVGYI 496 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~ 496 (630)
+...+..|.++...|+. ++|.+++.++-....+..|...|...-+
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv 391 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFV 391 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHH
Confidence 44558889999999999 8888888888887777666555544333
No 193
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.32 E-value=0.0027 Score=63.41 Aligned_cols=176 Identities=14% Similarity=0.087 Sum_probs=123.9
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcchHH---HHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812 343 ALGKFEEAINTLKGVVRQTEKESETR---ALVFISMGKALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYS 415 (630)
Q Consensus 343 ~~g~~~~A~~~~~~~l~~~~~~~~~~---~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (630)
-.|+-+.++..+.++.+...-..+.- ...|+.....+.. ..+.+.|.+.+......+ |..+..+.
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--------P~s~lfl~ 271 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--------PNSALFLF 271 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--------CCcHHHHH
Confidence 56888999999998876322222221 1122222222222 345566777777666554 56667888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHH
Q 006812 416 EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY 495 (630)
Q Consensus 416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 495 (630)
..|+++...|+.++|++.|++++........ .....++.+++++..+++|++|..++.+..+. +....+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q---l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~WSka~ 341 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQ---LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SKWSKAF 341 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHh---HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cccHHHH
Confidence 8999999999999999999998853322211 12346789999999999999999999988872 3344555
Q ss_pred HHHHHHHHHHHcCCh-------hHHHHHHHHHHHHHHHhcCCCCHHHH
Q 006812 496 IYNNLGAAYLELDRP-------QSAAQVFAFAKDIMDVSLGPHHADSI 536 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~ 536 (630)
..+..|.++...|+. ++|.++|.++-.+..+..+...|...
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~ 389 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEK 389 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHH
Confidence 667889999999999 89999999998888776665555443
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.30 E-value=1.8e-05 Score=59.86 Aligned_cols=100 Identities=16% Similarity=0.038 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 006812 455 SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD 534 (630)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 534 (630)
+..-|......|+.+.|++.|.+++.+. |..+.+|++.+..+.-+|+.++|++-+++++++. |+....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trt 113 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRT 113 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchH
Confidence 3455778888999999999999999853 6667799999999999999999999999999975 444455
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 535 SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 535 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
...++...|.+|..+|+-+.|..-|+.|.++.
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 56889999999999999999999999997653
No 195
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.30 E-value=3.3e-05 Score=58.40 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV 371 (630)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 371 (630)
..+..-|......|+.+.|++.|.+++.+ -|....+|++.+..+.-+|+.++|++-++++++..+........+
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCL------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHh------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 33445677888899999999999999998 577889999999999999999999999999999988777777889
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812 372 FISMGKALCNQEKFADAKRCLEIACGIL 399 (630)
Q Consensus 372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~ 399 (630)
+...|.+|..+|+-+.|..-|+.+.++.
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 9999999999999999999999887664
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.28 E-value=0.00026 Score=61.63 Aligned_cols=176 Identities=15% Similarity=0.169 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812 331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV 410 (630)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 410 (630)
+..+.+-|...+..|++++|+..|+.+....+-.+- ...+...++.++.+.+++++|+...++.+.... .+|+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP-----~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY-SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP-----THPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----CCCCh
Confidence 445555666666777777777777776654443322 255777777777778888888877777766653 33566
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCCCC-chhH------------HHHHHHHHHHHcCChhhHH
Q 006812 411 ADAYSEISMQYESM-----NEFETAISLLKRTLALLEKLPQAQH-SEGS------------VSARIGWLLLLTGKVPQAI 472 (630)
Q Consensus 411 ~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~-~~~~------------~~~~la~~~~~~g~~~~A~ 472 (630)
..+++..|.++... .+...+...+...-++..+.+.... +++. --..+|..|.+.|.+..|+
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 66666666665542 2333333333333333333332221 1111 1135788999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHH
Q 006812 473 PYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517 (630)
Q Consensus 473 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 517 (630)
..++.+++-+ ++.+....++..+..+|..+|-.++|...-
T Consensus 188 nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 188 NRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9999999854 345667788999999999999999986643
No 197
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.001 Score=58.16 Aligned_cols=227 Identities=13% Similarity=0.070 Sum_probs=149.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 006812 254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRA 333 (630)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 333 (630)
.++.-....+++++|+..|.+.+.-.-........+.-.+...++.+|...|++..--+......+.+..+... ....+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~Ki 86 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITKI 86 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHHH
Confidence 45666677889999999998887541110000111334556789999999999988777777666665554433 22222
Q ss_pred HHHH-HHHHHHcCCHHHHHHHHHHHHHHhhhcchH--HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812 334 EIDA-ANMQIALGKFEEAINTLKGVVRQTEKESET--RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV 410 (630)
Q Consensus 334 ~~~l-a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 410 (630)
...+ -.+-.....++.-+..+...++...+.... ....-..+..++++.|+|.+|+......+.-+++.. +.+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK~~L 164 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DKINL 164 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cccce
Confidence 2222 222334566777788888877766544322 123345678889999999999999888777766554 33556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK 483 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 483 (630)
..++..-..+|....+..++...+..|........-+....+..-..-|...+...+|.-|..+|-++++-+.
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 6667777888888888888888888777766555432222222223446667778899999999999988543
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=1.1e-05 Score=70.56 Aligned_cols=107 Identities=17% Similarity=0.031 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHH
Q 006812 252 NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELL 331 (630)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 331 (630)
.++.|.-++..|+|..|..-|..-++-++ +......++++||.+++.+|+++.|...|..+.+ ..+..+...
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-----~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-----NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCCh
Confidence 45556667788999999999999888666 5667788999999999999999999999986544 667778888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 332 RAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 332 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
.+++.+|.+...+|+.++|...++++++.++....
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999999999999998877644
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.27 E-value=0.00027 Score=57.47 Aligned_cols=136 Identities=11% Similarity=0.067 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (630)
.-.+.||......|++.+|...|++++. |..-.+...+..++...+..+++..|...+++..+.- + ..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-----p-a~ 157 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-----P-AF 157 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-----C-cc
Confidence 4456789999999999999999999987 5555556788999999999999999999999887732 1 11
Q ss_pred cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
........+|.++..+|++.+|...|+.++... |.. ......+..+.++|+.++|..-+....+...+
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PGP-QARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 223355678999999999999999999999854 222 35555688899999999998877776655544
No 200
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=3.4e-05 Score=63.25 Aligned_cols=106 Identities=22% Similarity=0.136 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL 190 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 190 (630)
.+..+-.-|.-++..| +|++|..-|..||.+.+.. .......+|.+.|.+..+++.++.|+..+.+++.+
T Consensus 94 kad~lK~EGN~~F~ng-dyeeA~skY~~Ale~cp~~-----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---- 163 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNG-DYEEANSKYQEALESCPST-----STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---- 163 (271)
T ss_pred HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHhCccc-----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----
Confidence 4456677888899998 9999999999999999665 23457889999999999999999999999999998
Q ss_pred hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE 238 (630)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 238 (630)
.|.+..++...+.+|.++..|++|+.-|.+.++..+
T Consensus 164 ------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 164 ------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred ------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 556667788899999999999999999999886543
No 201
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.22 E-value=0.0044 Score=56.76 Aligned_cols=229 Identities=25% Similarity=0.269 Sum_probs=164.1
Q ss_pred hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 006812 262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQ 341 (630)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 341 (630)
.+.+..+...+...+...... .........+..+...+++..+...+...... ...+.....+...+..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 36 LGELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLL 105 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHH
Confidence 345555666555555432210 12355667788888899999998888877653 22456677888889999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH-HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 006812 342 IALGKFEEAINTLKGVVRQTEKESETRALVFISMGK-ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ 420 (630)
Q Consensus 342 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 420 (630)
...+++..++..+..++........ .....+. ++...|+++.|...+.+++..... .......+...+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 176 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDPDL----AEALLALGALYELGDYEEALELYEKALELDPE-----LNELAEALLALGAL 176 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCcch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ccchHHHHHHhhhH
Confidence 9999999999999998875544311 2233333 888999999999999998552110 01344556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 006812 421 YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL 500 (630)
Q Consensus 421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 500 (630)
+...++++.|+..+.+++...... ....+..++..+...+++++|...+..++... +.....+..+
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ 242 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNL 242 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhH
Confidence 888999999999999998863331 23467889999999999999999999998842 3244466677
Q ss_pred HHHHHHcCChhHHHHHHHHHHHH
Q 006812 501 GAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
+..+...+.++++...+.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 243 ALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777778899999999998884
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.19 E-value=0.005 Score=56.61 Aligned_cols=298 Identities=14% Similarity=0.058 Sum_probs=200.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q 006812 213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAH 292 (630)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 292 (630)
-|.+-.-.|+-..|.+.-.++-.+.. .+.+-+ +...-++.-.-.|+++.|.+-|+-++.. ......
T Consensus 90 tGliAagAGda~lARkmt~~~~~lls----sDqepL--IhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PEtRll 155 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLS----SDQEPL--IHLLEAQAALLEGDYEDARKKFEAMLDD--------PETRLL 155 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhh----ccchHH--HHHHHHHHHHhcCchHHHHHHHHHHhcC--------hHHHHH
Confidence 45666677888888887777654432 333322 2333466677789999999999987742 111122
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcchHH--
Q 006812 293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQT--EKESETR-- 368 (630)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~-- 368 (630)
-+..|-.--...|..+.|+.|-+.+... .|....+....-...+..|+|+.|+++.+...... .++....
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r 229 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEK------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR 229 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH
Confidence 2223333345689999999999887775 45556666666677889999999999998765432 2222111
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 448 (630)
+..+..-+.... .-+...|...-.++.++. |+..-.-..-+..++..|+..++-.+++.+-+ ...
T Consensus 230 AvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~--------pdlvPaav~AAralf~d~~~rKg~~ilE~aWK------~eP 294 (531)
T COG3898 230 AVLLTAKAMSLL-DADPASARDDALEANKLA--------PDLVPAAVVAARALFRDGNLRKGSKILETAWK------AEP 294 (531)
T ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHhhcC--------CccchHHHHHHHHHHhccchhhhhhHHHHHHh------cCC
Confidence 222222222222 234556666666666654 45556666778899999999999999998877 345
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
||. ++.+|....--+.++.-++++-.+. .-.|+..+.....+..-+.-|++..|..--+.+..+.
T Consensus 295 HP~------ia~lY~~ar~gdta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~---- 359 (531)
T COG3898 295 HPD------IALLYVRARSGDTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA---- 359 (531)
T ss_pred ChH------HHHHHHHhcCCCcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC----
Confidence 554 4455666555567777777776643 2346677788889999999999999988888776632
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 006812 529 GPHHADSIEACQNLSKAYSSM-GSYTLAIEFQQRAIDA 565 (630)
Q Consensus 529 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 565 (630)
|. ..++..|+.+-... |+-.++..++-++++.
T Consensus 360 ----pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 ----PR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ----ch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 22 24778889888766 9999999999999864
No 203
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.19 E-value=5.4e-05 Score=75.82 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=96.5
Q ss_pred HHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHhh
Q 006812 294 RRLLGVIYSGL---EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK--------FEEAINTLKGVVRQTE 362 (630)
Q Consensus 294 ~~~la~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~l~~~~ 362 (630)
++..|.-+... ++..+|+.+|++|+++ +|+...++..++.+|..... ...+.....+++....
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 44455555444 3478999999999998 88888888888877765432 2333344444333211
Q ss_pred hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 363 KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 363 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
.+..+.++..+|..+...|++++|...+++|+.+. +. ..+|..+|.++...|++++|++.|++|+.+
T Consensus 416 --~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 416 --LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred --CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12224578888888889999999999999999875 33 578999999999999999999999999987
No 204
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.18 E-value=5.1e-05 Score=75.99 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHH
Q 006812 369 ALVFISMGKALCNQ---EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEF--------ETAISLLKRT 437 (630)
Q Consensus 369 ~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~a 437 (630)
+..++..|.-+... ++...|+.+|++++++. |+.+.++..++.+|.....+ ..+....+++
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--------PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 33444445555443 34778999999999876 67777777777776554322 2333333333
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHH
Q 006812 438 LALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVF 517 (630)
Q Consensus 438 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 517 (630)
+.+ ........++..+|..+...|++++|...+++|+++ .|. ..+|..+|.++...|++++|++.|
T Consensus 411 ~al-----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 411 VAL-----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred hhc-----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 322 112223457788888888999999999999999983 243 578999999999999999999999
Q ss_pred HHHHHH
Q 006812 518 AFAKDI 523 (630)
Q Consensus 518 ~~al~~ 523 (630)
++|+.+
T Consensus 477 ~~A~~L 482 (517)
T PRK10153 477 STAFNL 482 (517)
T ss_pred HHHHhc
Confidence 999885
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00011 Score=65.28 Aligned_cols=112 Identities=16% Similarity=0.051 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHH
Q 006812 243 EDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL---EEHQKALEQNELSQK 319 (630)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~ 319 (630)
..+|..+.-|..||.+|...|++..|...|.+++++.. ++++. +..+|.+++.+ ....++...+++++.
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-----~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-----DNPEI---LLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-----CCHHH---HHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 34566688899999999999999999999999999765 34444 33445555443 345678888888888
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812 320 VLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR 368 (630)
Q Consensus 320 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 368 (630)
. ++..+.+...+|..++..|+|.+|...++..++..+.+.+..
T Consensus 222 ~------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 222 L------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred c------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 6 888999999999999999999999999999999888776643
No 206
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0086 Score=61.99 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (630)
.+|..+|.+....|...+|++.|-++ ++| ..|...-.+..+.|.|++-+.++.-+-+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 45666777777777777777776653 222 33555556666677777776666655443
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=4.9e-05 Score=67.55 Aligned_cols=104 Identities=17% Similarity=0.065 Sum_probs=87.0
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHH
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD---RPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~ 525 (630)
+.++.-|..||.+|..+|++..|...|.+++++. |+....+..+|.++..+. ...++...+++++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--- 221 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--- 221 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---
Confidence 3456789999999999999999999999999952 444557777888877664 46789999999998
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 526 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
.+|....++..||..++..|+|.+|...++..++....
T Consensus 222 -----~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 222 -----LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred -----cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 56777789999999999999999999999999876433
No 208
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.12 E-value=0.0042 Score=56.88 Aligned_cols=209 Identities=23% Similarity=0.255 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
........+..+...+.+..+...+...+.. .........+...+..+...+++..+...+..+.......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 128 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP------- 128 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-------
Confidence 3566778888999999999999999888764 2233335578888888889999999999888877654221
Q ss_pred HHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812 410 VADAYSEISM-QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488 (630)
Q Consensus 410 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (630)
.......+. ++...|++++|...+.+++..... ...........+..+...+++++|+..+.+++...
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------ 197 (291)
T COG0457 129 -DLAEALLALGALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEEALELLEKALKLN------ 197 (291)
T ss_pred -chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC------
Confidence 122233333 889999999999999999552110 01223455666666888999999999999999843
Q ss_pred CCcc-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 489 KHFG-VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 489 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
+. ....+..++..+...++++.|...+..++... +.....+..++..+...|+++++...+.+++....
T Consensus 198 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 198 --PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred --cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33 45678899999999999999999999998853 32345677777777777889999999999887654
Q ss_pred H
Q 006812 568 S 568 (630)
Q Consensus 568 ~ 568 (630)
.
T Consensus 268 ~ 268 (291)
T COG0457 268 D 268 (291)
T ss_pred c
Confidence 3
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=98.12 E-value=3.5e-05 Score=62.17 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC
Q 006812 325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET 404 (630)
Q Consensus 325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 404 (630)
|.+++.....+..|.-++..|++++|..+|+-.......+ ...+..||.++..+++|++|+..|..+..+....
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-- 104 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-- 104 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--
Confidence 4556677778888888899999999999998776643333 3478899999999999999999998887765322
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
....+..|.+|...|+.+.|...|+.++.
T Consensus 105 ------p~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 105 ------YRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ------CCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 13457789999999999999999988877
No 210
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.09 E-value=6.6e-06 Score=57.54 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=53.1
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006812 462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQN 541 (630)
Q Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 541 (630)
+...|++++|+..|++++. .+|....++..+|.+|...|++++|...+++++. .+|+....+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--------~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ--------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--------QDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH--------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--------GGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCcCHHHHHHH
Confidence 3578999999999999998 3577778899999999999999999999999987 34544444444
Q ss_pred HHH
Q 006812 542 LSK 544 (630)
Q Consensus 542 la~ 544 (630)
++.
T Consensus 65 ~a~ 67 (68)
T PF14559_consen 65 LAQ 67 (68)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 211
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=8.8e-05 Score=70.78 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=97.5
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812 298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK 377 (630)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 377 (630)
-.++...++++.|+..+++..+. .|. +...++.++...++..+|+..+.+++...+.+ +..+...+.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~ 242 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRER------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAE 242 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhc------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Confidence 44555667899999888864442 233 45568999999999999999999999755544 557888899
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR 436 (630)
Q Consensus 378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 436 (630)
.+...++++.|+...+++..+. |.....|..|+.+|...|++++|+..++.
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999999999887 77889999999999999999999977663
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.08 E-value=1.4e-05 Score=75.50 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=63.1
Q ss_pred CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
..|.....++++|.+|..+|+|++|+..|++++++. +++++...+++++|.+|..+|++++|++.+++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999999999999953 333333356999999999999999999999999986
No 213
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=6.1e-05 Score=61.83 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 329 (630)
..+..-|.-++..|+|++|..-|..|+++++.. .......+|.+.|.+..+++.++.|+.-..+++++ .|.
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pt 166 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPT 166 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------Cch
Confidence 334455888999999999999999999998864 23466778889999999999999999999999988 777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE 364 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 364 (630)
...++...|.+|....+|++|++-|+++++..+..
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 88888899999999999999999999999876554
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.08 E-value=6.4e-05 Score=59.24 Aligned_cols=122 Identities=19% Similarity=0.083 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
...++.-|.-.+..|+|++|++.|+.....+ +..+....+...||.+|+..|++++|+..+++.+++. |.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 3567888999999999999999999877632 3345556788899999999999999999999999864 67
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHhcC
Q 006812 532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASG 593 (630)
Q Consensus 532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 593 (630)
||...-+++..|.++..+.. ..+.... ..+..+....+|..-|+++..+..+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~-----~~~~~~~-----~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDE-----GSLQSFF-----RSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred CCCccHHHHHHHHHHHHHhh-----hHHhhhc-----ccccCcHHHHHHHHHHHHHHHHCcC
Confidence 88888899999988887765 1111111 1122345566666666666665443
No 215
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.05 E-value=1e-05 Score=50.06 Aligned_cols=41 Identities=34% Similarity=0.455 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH
Q 006812 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD 534 (630)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 534 (630)
+.++.+||.+|..+|++++|..++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999985
No 216
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0071 Score=53.11 Aligned_cols=224 Identities=14% Similarity=0.070 Sum_probs=150.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH----HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 212 ELANVKTAMGRREEALEHLQKCLEI----KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
.++.-..+.+++++|+..|.+.+.- .++. ..+.-.+...++.+|...|++..--+.....-+...+. ..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TK 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cc
Confidence 4667777888999999999887743 1111 11234567889999999999988777666665555543 23
Q ss_pred HHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--
Q 006812 288 VEVAHDRRLLGVIY-SGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE-- 364 (630)
Q Consensus 288 ~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-- 364 (630)
+....+...|..-+ .....++.-+...+..++...+-.........-..+..+++..|.|.+|+......+...++.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD 160 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD 160 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence 33344333333332 345567777777777777655433333334445667889999999999999999888766653
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV-ADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
.+....++..-..+|....+..++...+..|........ .||.. +..-..-|.+++...+|.-|..+|-++++-+..
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y--CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY--CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC--CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 334455666677888888899888888877766554443 33332 233333466777888999999999999885544
Q ss_pred C
Q 006812 444 L 444 (630)
Q Consensus 444 ~ 444 (630)
.
T Consensus 239 l 239 (421)
T COG5159 239 L 239 (421)
T ss_pred c
Confidence 3
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.03 E-value=0.0017 Score=53.08 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=114.9
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812 260 VAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN 339 (630)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 339 (630)
.+.=+.+....-..+.+++.+. ..-...||......|++.+|..+|++++. |.--+....+..++.
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApT---------vqnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~ 132 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPT---------VQNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQ 132 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchh---------HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHH
Confidence 3333455554444444443332 23356789999999999999999998876 444566778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 006812 340 MQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISM 419 (630)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 419 (630)
..+..+++..|...+++..+..+... .+.....+|..+..+|++.+|+..|+.++..... .......+.
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg---------~~ar~~Y~e 201 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG---------PQARIYYAE 201 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC---------HHHHHHHHH
Confidence 99999999999999999887543211 1336677899999999999999999999887621 134455678
Q ss_pred HHHHcCCHHHHHHHHHHHHHHH
Q 006812 420 QYESMNEFETAISLLKRTLALL 441 (630)
Q Consensus 420 ~~~~~g~~~~A~~~~~~al~~~ 441 (630)
.+.++|+.++|..-+....+..
T Consensus 202 ~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 202 MLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHhcchhHHHHHHHHHHHHH
Confidence 8899999999887776665543
No 218
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0095 Score=53.74 Aligned_cols=295 Identities=12% Similarity=0.088 Sum_probs=180.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812 254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV----EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329 (630)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 329 (630)
..+......+++++++..+...+.-... ....+ ..-.....+|..+...|+.++-....+.....+...+...
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~--~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak- 85 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQG--ASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK- 85 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhcc--ccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH-
Confidence 3344445556677888887777664221 11111 2234566889999999999988877776666655544332
Q ss_pred HHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhhcchHH--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 330 LLRAEIDAANM-QIALGKFEEAINTLKGVVRQTEKESETR--ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 330 ~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
.......+-.. ....+..+.-+.++..+++......... -..-..+..+|...++|.+|+......+.-.++.. +
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD--D 163 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD--D 163 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--c
Confidence 22222222222 2334456677788888887765543321 23445678999999999999999888877776654 3
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF 486 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (630)
.+....++..-...|....+..+|...+..|.......+-+....+.+=..-|.++....+|.-|..+|-+|++-+...
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~- 242 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL- 242 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc-
Confidence 3345556666677888889999998888887776555543222223333455777777899999999999999866543
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 006812 487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM--GSYTLAIEFQQR 561 (630)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~ 561 (630)
.++.....++..+-.+-...+..++-...+.-=..+. . ..+ ..+++..++..+.+. .+|+.|+.-|+.
T Consensus 243 -~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g~-~i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 243 -DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AGR-DIDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred -CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cCc-chHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 2334444555555555566677766555443222221 1 122 235677777777543 344444444443
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.019 Score=57.00 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=35.5
Q ss_pred HHHHHhhHHHhhccChHHHHHHHHHH-----HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 158 MCLQVMGSANYSFKRFSDSLGYLSKA-----NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQK 232 (630)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (630)
..|..++......-.++-|...|-+. +++.+++..-. .--...+.+-..-|+|++|.+.|..
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~-------------s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH-------------SKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh-------------hHHHHhHhHhhhhcchhHhhhhhhc
Confidence 45566777777777777777777654 22222221111 0112345555666888888887754
No 220
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.02 E-value=0.0015 Score=48.74 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=88.7
Q ss_pred HHHHHHHHHH--HHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCC--hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 111 LGLVGLKIAL--KLDQEGGDPEMTLSFANRALNVLDKDERNNRPS--LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 111 ~~~~~~~~g~--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
.+.+|+.++. -....| .|++|...+++|+.+...+......+ -..+.|+..|+..+..+|+|++++...++++..
T Consensus 6 Va~aY~aLs~ae~ql~~g-~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDG-AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3455555544 344455 99999999999999988772222211 246778999999999999999999999999998
Q ss_pred HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI 240 (630)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (630)
+.+-+.-. .|....+..+-++.+..+...|+.++|+..|+.+-++....
T Consensus 85 FNRRGEL~-----qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 85 FNRRGELH-----QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHH--TT-----STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred Hhhccccc-----cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 87764432 23344555667789999999999999999999998887654
No 221
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.00 E-value=0.00011 Score=58.02 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
..++.-|......|+|++|++.|+....-. +..+....+...||.+|+..|++++|+..+++-+++.+ .|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP-----~h 80 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP-----TH 80 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CC
Confidence 556789999999999999999998865433 44455568889999999999999999999999999876 67
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE 364 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 364 (630)
+.+..+++..|.++..+.. .++. . +. ..-...+...+|...|++.+...++.
T Consensus 81 p~vdYa~Y~~gL~~~~~~~--~~~~---~---~~-----------------~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDE--GSLQ---S---FF-----------------RSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCccHHHHHHHHHHHHHhh--hHHh---h---hc-----------------ccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 7788888888888876543 1111 0 00 11112334557888888888887765
No 222
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.011 Score=53.37 Aligned_cols=300 Identities=13% Similarity=0.056 Sum_probs=181.7
Q ss_pred hhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Q 006812 163 MGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE 242 (630)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 242 (630)
.+.......++++++..+.+.+...+... +.+......-.+...+|..+...|++++-.......-......
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~------s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v-- 81 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQGAS------SDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV-- 81 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhcccc------CCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh--
Confidence 44444555667777777777666421111 1111122233556689999999999988766666544444332
Q ss_pred cchHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812 243 EDSRELGVANRDLAEAFVA-VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL 321 (630)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 321 (630)
..+..+.....+-..+.. -+....-+..+..+++...+.. ........-..+..+|...++|.+|+......++-+
T Consensus 82 -~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rEl 158 (411)
T KOG1463|consen 82 -SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLREL 158 (411)
T ss_pred -hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 112233344444433332 3445566777777777655410 111122233467889999999999999999999999
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh--cch-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812 322 KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK--ESE-TRALVFISMGKALCNQEKFADAKRCLEIACGI 398 (630)
Q Consensus 322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 398 (630)
+++.+.+..+.++..-...|....+..+|...+..+-..... -+| ..+..-..-|.++....+|.-|..||-+|.+-
T Consensus 159 KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 159 KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 999888888888888889999999999988887766543322 122 22334444577777889999999999998877
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH--cCChhhHHHHHH
Q 006812 399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL--TGKVPQAIPYLE 476 (630)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~ 476 (630)
+.... +++....++..+-.+-...+..++--..+..=..+ + . ..+...+...++..+.+ +.+|+.|+.-|.
T Consensus 239 f~s~~--~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l-~-y---~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 239 FDSLD--DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL-K-Y---AGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred ccccC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH-h-c---cCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 65443 22344444444444445566666654444322222 1 1 12345566777777654 345566666555
Q ss_pred HHHH
Q 006812 477 SAAE 480 (630)
Q Consensus 477 ~al~ 480 (630)
.-+.
T Consensus 312 ~eL~ 315 (411)
T KOG1463|consen 312 KELA 315 (411)
T ss_pred HHHh
Confidence 4443
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.99 E-value=3.3e-05 Score=73.00 Aligned_cols=74 Identities=19% Similarity=0.094 Sum_probs=64.3
Q ss_pred ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812 200 EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278 (630)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (630)
....|.....++++|.+|...|+|++|+..|++++++. ++++....+++++|.+|..+|++++|+.++++++++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567778899999999999999999999999999765 444444467999999999999999999999999986
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0031 Score=54.60 Aligned_cols=141 Identities=14% Similarity=0.093 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCCh
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS 328 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 328 (630)
..+.+.+..++.-.|.|.-....+.+.++. +++........||.+..+.|+.+.|..+|+...+....+..-.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q 249 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ 249 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccc
Confidence 356777788888889999999999888873 2333345566789999999999999999998777666666556
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812 329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD 400 (630)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 400 (630)
....+..+.+.+|.-.+++.+|...+.+++...+.+ +.+.++.|.|....|+..+|++.++.++.+..
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~----~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN----AVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCc----hhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 677788889999999999999999998888754443 44777888899999999999999998877653
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0019 Score=55.86 Aligned_cols=186 Identities=13% Similarity=0.073 Sum_probs=131.3
Q ss_pred hHHHhhccChHHHHHHHHHHHHHHhHhhhcC----C-CCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 164 GSANYSFKRFSDSLGYLSKANRMLGRLEEEG----L-GGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE 238 (630)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 238 (630)
+.+....|+..+.+.-+.......+++.... . .....+.......+.+.+..++.-.|.|.-.+..+.+.++
T Consensus 129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~--- 205 (366)
T KOG2796|consen 129 AELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK--- 205 (366)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH---
Confidence 4555566777766655544444333322111 0 0011112223345567788888899999999999988775
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 006812 239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQ 318 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 318 (630)
.+.+........||.+..+.|+.+.|..+|+..-+......+ -.....+..+.+.+|...+++..|...+.+.+
T Consensus 206 ----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 206 ----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred ----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--cchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 233344566788999999999999999999977655544321 22334567788999999999999999888776
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812 319 KVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE 364 (630)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 364 (630)
.. ++..+.+.++.|.+....|+..+|++..+.++.+.+..
T Consensus 280 ~~------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 280 RM------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred cc------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 65 67778888899999999999999999999999887664
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=97.93 E-value=0.00026 Score=67.30 Aligned_cols=162 Identities=14% Similarity=0.005 Sum_probs=114.4
Q ss_pred HHHHHHHhccc---cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhh
Q 006812 295 RLLGVIYSGLE---EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL---------GKFEEAINTLKGVVRQTE 362 (630)
Q Consensus 295 ~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~ 362 (630)
+..|......+ ..+.|+.+|.+|+.. ...+|+.+.++..++.+++.. ....+|.+..++++++.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~---~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNK---SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhc---ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence 34454443333 455677777777621 122688888888888887754 234567777788887655
Q ss_pred hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 363 KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE 442 (630)
Q Consensus 363 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 442 (630)
.+ +.++..+|.+....++++.|...|++|+.+. |+.+.+++..|.+....|+.++|.+.+++++++
T Consensus 336 ~D----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL-- 401 (458)
T PRK11906 336 VD----GKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICIDKSLQL-- 401 (458)
T ss_pred CC----HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--
Confidence 55 5588999999999999999999999999886 788999999999999999999999999999986
Q ss_pred hCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812 443 KLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES 477 (630)
Q Consensus 443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (630)
.+....+.+.......|+. ...++|+.+|-+
T Consensus 402 ---sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 402 ---EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred ---CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 2221112222222224544 446778877654
No 227
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.89 E-value=5.1e-05 Score=53.88 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
|..+|...+++++|++++++++.+ +|.....+...|.++..+|++++|...++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 356899999999999999999983 46677789999999999999999999999999853
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=97.89 E-value=0.00077 Score=64.20 Aligned_cols=148 Identities=12% Similarity=0.105 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM---------NEFETAISLLKRTLALLEKLPQAQHSEGSVS 455 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 455 (630)
.+.|..+|.+++.... ..|+.+.+|..++.++... ....+|....++|+++ ++.++.++
T Consensus 274 ~~~Al~lf~ra~~~~~-----ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-------d~~Da~a~ 341 (458)
T PRK11906 274 IYRAMTIFDRLQNKSD-----IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-------TTVDGKIL 341 (458)
T ss_pred HHHHHHHHHHHhhccc-----CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-------CCCCHHHH
Confidence 4556667777762221 1257777787787777653 2344566666677664 33456688
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
..+|.+....++++.|...|++|+. -+|+.+.+++..|.+....|+.++|.+.+++++++ +|..
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~--------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--------sP~~ 405 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKI--------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--------EPRR 405 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhh--------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------Cchh
Confidence 9999999999999999999999998 45888899999999999999999999999999984 3443
Q ss_pred HH-HHHHHHH-HHHhcCCHHHHHHHHHH
Q 006812 536 IE-ACQNLSK-AYSSMGSYTLAIEFQQR 561 (630)
Q Consensus 536 ~~-~~~~la~-~~~~~g~~~~A~~~~~~ 561 (630)
.. ....+-. .|+.. ..++|+.+|-+
T Consensus 406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 406 RKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred hHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 32 2222322 45544 46777776644
No 229
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.049 Score=56.81 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-------------
Q 006812 254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV------------- 320 (630)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------------- 320 (630)
..|.-++..|.|+.|.-+|...- -+..|+.....+|+|..|.+..++|-..
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~vS----------------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVS----------------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHhh----------------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 34555555566665555543321 1334455555566666666655544221
Q ss_pred -----HHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812 321 -----LKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 321 -----~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 394 (630)
.+-.|.+ .-.+.-+-.+...|...|-+++-+.+++.++..-..+ ...+..+|.+|.+- ++++-.++++-
T Consensus 1263 ~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH----MgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH----MGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH----HHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 1112222 1223344466778888999999999988887643322 23566677666543 33443333332
Q ss_pred HH---HHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 006812 395 AC---GILDKKETISPEEVADAYSEISMQYESMNEFETAI 431 (630)
Q Consensus 395 a~---~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 431 (630)
.. .+-+-. ...+.+..|..+..+|.+-..|+.|.
T Consensus 1338 FwsRvNipKvi---RA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1338 FWSRVNIPKVI---RAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHhcchHHHH---HHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 21 111000 00133455666666666666665543
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.02 Score=51.69 Aligned_cols=164 Identities=11% Similarity=-0.057 Sum_probs=121.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812 214 ANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD 293 (630)
Q Consensus 214 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (630)
+.+....|++.+|....++.+ .+.|....++..--.+++..|+...-...+++.+.... ++-|-...+
T Consensus 110 aai~~~~g~~h~a~~~wdklL--------~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn----~dlp~~sYv 177 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLL--------DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN----ADLPCYSYV 177 (491)
T ss_pred HHHhhccccccHHHHHHHHHH--------HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC----CCCcHHHHH
Confidence 344566788888888888877 44454455566666788888998888888887665422 245555666
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812 294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI 373 (630)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 373 (630)
...++......|-|++|.+..++++++ ++....+...++.++...|++.++.+...+.-.......-....-|-
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW 251 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW 251 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence 667788888999999999988888887 67778888899999999999999999888765444332222334455
Q ss_pred HHHHHHHhhccHHHHHHHHHHH
Q 006812 374 SMGKALCNQEKFADAKRCLEIA 395 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a 395 (630)
..+.++...+.|+.|++.|+.-
T Consensus 252 H~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHH
Confidence 6677888889999999988764
No 231
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=8.5e-05 Score=51.83 Aligned_cols=52 Identities=25% Similarity=0.294 Sum_probs=44.0
Q ss_pred hhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 168 YSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
+..|++++|+..|++++.. .|....+++.+|.+|...|++++|...+++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR----------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH----------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5689999999999999988 334456777899999999999999999999773
No 232
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.81 E-value=7.3e-05 Score=53.07 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=52.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
|..+|...+++++|+.++++++.+ +|+....+...|.++..+|++++|...++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 357889999999999999999994 57777899999999999999999999999999653
No 233
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.80 E-value=4.2e-05 Score=47.17 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG 492 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (630)
.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 4779999999999999999999999999999999999884
No 234
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.77 E-value=0.00044 Score=60.31 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=89.3
Q ss_pred cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC-----CHHHHHHH
Q 006812 465 TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH-----HADSIEAC 539 (630)
Q Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 539 (630)
...+++|++.|.-|+-...- .+..+...+..+..+|++|...|+.+....++++|++.+.+.+... ..+...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34678899999888865443 3445567788999999999999998888888888888887766432 23445788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812 540 QNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ 586 (630)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~ 586 (630)
+.+|.++.+.|++++|..+|.+++....... .+.-.+.|+..++.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~--~~~l~~~AR~~w~~ 213 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK--EPKLKDMARDQWQL 213 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHHh
Confidence 9999999999999999999999986433322 23445666665543
No 235
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.74 E-value=0.0047 Score=46.17 Aligned_cols=123 Identities=19% Similarity=0.106 Sum_probs=88.5
Q ss_pred HHHHHHHhhHH--HhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSA--NYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233 (630)
Q Consensus 156 ~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (630)
++.+|..|+.. .+.-|-|++|...+.+|+++.+.+.... ..|..---+.++-.|+..+..+|+|++++....++
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eE----aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEE----AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHh----hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 45555555544 4567889999999999999988775544 44555555677888999999999999999999999
Q ss_pred HHHHHHHh---ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812 234 LEIKELIL---EEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282 (630)
Q Consensus 234 l~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (630)
|..+.+.- .........+.++.+..+...|+.++|+..|+.+-++...-
T Consensus 82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 98876541 11112345566778999999999999999999998876643
No 236
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.69 E-value=0.00022 Score=63.87 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 006812 160 LQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL 239 (630)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 239 (630)
+-..|+-|+++|+|++|+.+|.+++.+ .|.....+.+.+.+|.++..|..|..-+..|+.+.+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~----------------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV----------------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc----------------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 355789999999999999999999987 3333456678899999999999999999999977654
Q ss_pred HhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 240 ILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
. ..+|...|.+-...|...+|.+-++.+|++-+
T Consensus 164 Y--------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 164 Y--------VKAYSRRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred H--------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 3 68899999999999999999999999998755
No 237
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.68 E-value=0.00013 Score=65.21 Aligned_cols=95 Identities=18% Similarity=0.027 Sum_probs=82.5
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
-..|.-|+++|+|++|+.+|.+++. -.|.....+.+.+.+|+++..|..|..-...|+.+. ..+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia--------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA--------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc--------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHH
Confidence 3457889999999999999999998 345556678899999999999999999999999853 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
..+|...+.+-..+|+..+|.+-++.++++-
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 6899999999999999999999999998763
No 238
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.68 E-value=0.092 Score=54.18 Aligned_cols=229 Identities=17% Similarity=0.049 Sum_probs=133.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 006812 219 AMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLG 298 (630)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 298 (630)
..+++.+|+....+.+ ..+|....+...-|....++|+.++|..+++. +.... .+ .-.++..+-
T Consensus 21 d~~qfkkal~~~~kll--------kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~----~~---D~~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLL--------KKHPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGLK----GT---DDLTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHH--------HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccCC----CC---chHHHHHHH
Confidence 4567777877777765 44565566666778889999999999966543 32211 12 234566778
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Q 006812 299 VIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKA 378 (630)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 378 (630)
.+|..+|++++|..+|+++... .|. -..+..+-.+|.+.+.|.+-.+.--+..+..++.+- ..|..+..+
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y---yfWsV~Sli 154 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY---YFWSVISLI 154 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc---hHHHHHHHH
Confidence 9999999999999999988775 454 555666667777777776544444444444444432 244444444
Q ss_pred HHhhccHHHHHH-----HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812 379 LCNQEKFADAKR-----CLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453 (630)
Q Consensus 379 ~~~~~~~~~A~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 453 (630)
.......++... +-++..+..-...|.. ...++.. ..-.++..+|++++|.+.+..-+. ...... ...
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~-~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l~~~---~~~ 227 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKI-ESEAEII-LYLLILELQGKYQEALEFLAITLA--EKLTSA---NLY 227 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCcc-chHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhcccc---chH
Confidence 444444433332 1111111111111211 1122222 223456678999999998854333 222111 112
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
.-+.....+...++|.+-.++..+.+.
T Consensus 228 l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 228 LENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 224556677788888888887777776
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.66 E-value=0.055 Score=51.19 Aligned_cols=204 Identities=11% Similarity=0.093 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhCC
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES---MNEFETAISLLKRTLALLEKLP 445 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~ 445 (630)
+.+..++-..|....+|+.-++..+..-.+-... .+....+....|.++.+ .|+.++|+..+..++.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~----~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~------ 210 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD----VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE------ 210 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc----hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh------
Confidence 4456677777899999998888877654441111 12333455667777888 8999999999988755
Q ss_pred CCCCchhHHHHHHHHHHHHc---------CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH
Q 006812 446 QAQHSEGSVSARIGWLLLLT---------GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV 516 (630)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 516 (630)
....+...++..+|.+|... ...++|+.+|.++.++. ++. ..-.|++.++...|...+...-
T Consensus 211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~~-Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PDY-YSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------ccc-cchHHHHHHHHHcCCcccchHH
Confidence 23334456888888887542 23566777777776632 211 1224667777777765444433
Q ss_pred HHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHhc
Q 006812 517 FAFAKDIMDVSLGP----HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKAS 592 (630)
Q Consensus 517 ~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 592 (630)
.++........++. ........+..++.+..-.|++++|.+.++++++.... .-..+..-+-+.++.+......
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~--~W~l~St~~ni~Li~~~~~~~~ 359 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP--AWELESTLENIKLIRHFRKRPE 359 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc--chhHHHHHHHHHHHHHHhcCCC
Confidence 33333111111111 11222235567788888999999999999999866211 1123344455566655554433
Q ss_pred C
Q 006812 593 G 593 (630)
Q Consensus 593 ~ 593 (630)
.
T Consensus 360 ~ 360 (374)
T PF13281_consen 360 E 360 (374)
T ss_pred C
Confidence 3
No 240
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0005 Score=58.44 Aligned_cols=98 Identities=18% Similarity=0.108 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
..-|..++...+|..|+..|.+++. .+|..+..+.+-+.++++..+++.+..-.+++++ -.|+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~--------~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--------l~~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAIC--------INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--------LDPNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHh--------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--------cChHH
Confidence 4456677778889999999999998 4577778889999999999999999999999999 45888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
+...+.+|.+......+++|+..+++|....+..
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999988873
No 241
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.60 E-value=0.0047 Score=52.34 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc
Q 006812 245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW 324 (630)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 324 (630)
...+..++..+|..|...|++++|++.|.++.+... ........+.++..+....+++.....+..++..+....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 356678899999999999999999999999877543 334566777888889999999999999999999988775
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812 325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE 362 (630)
Q Consensus 325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 362 (630)
++..........-|..+...++|.+|...|-.+...+.
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 55433344445556667778889888888877765443
No 242
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.58 E-value=0.086 Score=51.15 Aligned_cols=104 Identities=8% Similarity=-0.129 Sum_probs=67.1
Q ss_pred hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233 (630)
Q Consensus 154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (630)
|....+|+.|..-+..+ .+++..+.|++.+.. .|....+|...........+|+.-+.+|.++
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~----------------FP~s~r~W~~yi~~El~skdfe~VEkLF~RC 79 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV----------------FPSSPRAWKLYIERELASKDFESVEKLFSRC 79 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc----------------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45677888787777666 899999999988776 3334455666677777888999999999998
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812 234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282 (630)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (630)
|.-.-. .++- -..|..+-...|+...+....-+|.++....
T Consensus 80 LvkvLn------lDLW--~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k 120 (656)
T KOG1914|consen 80 LVKVLN------LDLW--KLYLSYVRETKGKLFGYREKMVQAYDFALEK 120 (656)
T ss_pred HHHHhh------HhHH--HHHHHHHHHHccCcchHHHHHHHHHHHHHHH
Confidence 843211 1111 1223344445566666666656665554443
No 243
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.58 E-value=0.054 Score=55.67 Aligned_cols=281 Identities=17% Similarity=0.102 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812 223 REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV-----LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL 297 (630)
Q Consensus 223 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (630)
...|..+++.+-+.. ...+...+|.+|..- .+.+.|+.+++.+..-..+.. +.....+.+.+
T Consensus 228 ~~~a~~~~~~~a~~g----------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~l 294 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGL 294 (552)
T ss_pred hhHHHHHHHHHHhhc----------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHH
Confidence 456777777654321 245666777777654 689999999999987311110 00122356678
Q ss_pred HHHHhccc-----cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhcchHHH
Q 006812 298 GVIYSGLE-----EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG---KFEEAINTLKGVVRQTEKESETRA 369 (630)
Q Consensus 298 a~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~ 369 (630)
|.+|.... +++.|+.+|.++-.. ....+...+|.++..-. ++..|..+|..+..... .
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~------~ 360 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH------I 360 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC------h
Confidence 88888743 678899999887664 34566778888887665 57899999998876321 3
Q ss_pred HHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Q 006812 370 LVFISMGKALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM-NEFETAISLLKRTLALLEKL 444 (630)
Q Consensus 370 ~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~ 444 (630)
.+.+.++.+|.. .-+...|..++.++.+.. ...+...++.++... +.++.+.-.+....+.--+.
T Consensus 361 ~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g----------~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 361 LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG----------NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc----------ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH
Confidence 377777777765 356788999998886653 112333344433322 66666666555544431111
Q ss_pred CCCCCchhHHHHHHHHHHHHc----CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----CChhHHHHH
Q 006812 445 PQAQHSEGSVSARIGWLLLLT----GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL----DRPQSAAQV 516 (630)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~ 516 (630)
. ......+.......... .+...+...+.++.. .....+...||.+|..- .+++.|...
T Consensus 431 ~---q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~ 497 (552)
T KOG1550|consen 431 A---QSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGRDPEKAAAQ 497 (552)
T ss_pred H---hhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCCChHHHHHH
Confidence 0 00011111111111111 134455555555544 23344677888888764 358899999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 006812 517 FAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM---GSYTLAIEFQQRAID 564 (630)
Q Consensus 517 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~ 564 (630)
|..+..- . ....+++|.++..- .....|..+|.++.+
T Consensus 498 y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 498 YARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 9998762 2 67889999998653 125777777777754
No 244
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00065 Score=57.78 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=87.9
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
+.-+..-|..++...+|..|+..|.+++.+ .|..+..+.+.+.+|.+..+++.+..-..+++++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql 73 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL 73 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc----------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc
Confidence 334456788888999999999999999998 4555677889999999999999999999999965
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812 237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (630)
. |+.+...+.+|.+......|++|+..++++..+....
T Consensus 74 ~--------~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 D--------PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred C--------hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 5 5558899999999999999999999999999888764
No 245
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.53 E-value=0.0014 Score=57.20 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=79.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC-----ccHHHHH
Q 006812 423 SMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH-----FGVGYIY 497 (630)
Q Consensus 423 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~ 497 (630)
....+++|++.|.-|+-...-........+.++..+|++|...|+.+....++++|++.+.+.+.... .+...++
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34568888888888887765553333334677899999999999998888899999988887754432 2446688
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 498 NNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 498 ~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
+.+|.+..+.|++++|..+|.+.+..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 89999999999999999999999874
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.52 E-value=0.066 Score=55.09 Aligned_cols=281 Identities=19% Similarity=0.135 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHhccchHH
Q 006812 173 FSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAM-----GRREEALEHLQKCLEIKELILEEDSRE 247 (630)
Q Consensus 173 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (630)
..+|..+++.+-+. ........+|.+|..- .+.+.|+.+|+.+..-.++.. +..
T Consensus 228 ~~~a~~~~~~~a~~------------------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~ 286 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL------------------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKG 286 (552)
T ss_pred hhHHHHHHHHHHhh------------------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhc
Confidence 45677777776655 1123445667766544 688999999999876321110 011
Q ss_pred HHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHH
Q 006812 248 LGVANRDLAEAFVAVL-----NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE---EHQKALEQNELSQK 319 (630)
Q Consensus 248 ~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~ 319 (630)
...+.+.+|.+|.... ++..|..+|.++-.. .+ ..+.+.+|.+|.... ++..|.++|..|..
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 2346788999998854 677799998888764 22 245667788887665 67899999988766
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-ccHHHHHHHHHH
Q 006812 320 VLKTWGLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ-EKFADAKRCLEI 394 (630)
Q Consensus 320 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~ 394 (630)
. ....+...++.+|.. ..+...|..+++++.+.... .+...++..+... ++++.+.-.+..
T Consensus 357 ~--------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~------~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 357 A--------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP------SAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred c--------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh------hhHHHHHHHHHHccccccHHHHHHHH
Confidence 3 346677788888764 35789999999998875411 1333333333222 666666554444
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc----C
Q 006812 395 ACGILDKKETISPEEVADAYSEISMQYESM----NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT----G 466 (630)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g 466 (630)
......+.. ...+..+.......... .+...+...+.++... ....+...+|.+|..- .
T Consensus 423 ~a~~g~~~~----q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---------g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 423 LAELGYEVA----QSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ---------GNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred HHHhhhhHH----hhHHHHHHHhccccccccccccchhHHHHHHHHHHhc---------cCHHHHhhhcceeeecCCCCC
Confidence 333321110 11111111111111111 1344555555554331 1234667888888764 4
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---CChhHHHHHHHHHHH
Q 006812 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL---DRPQSAAQVFAFAKD 522 (630)
Q Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~ 522 (630)
+++.|...|.++... . +....++|.++..- .....|.++|.++..
T Consensus 490 d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred ChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 588999999988762 1 66888999988653 125778888887766
No 247
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.49 E-value=0.12 Score=50.43 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH-HHHHhc
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE-RLKESF 486 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~ 486 (630)
...+..+..++.+..+.|+++.|...+.++........ .....+....+.++...|+..+|+..++..+. ......
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~---~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE---SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc---CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 35566777777777888888877777776655321110 00223556667777777888888777777666 222110
Q ss_pred -------------------------CCCCccHHHHHHHHHHHHHHc------CChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 487 -------------------------GPKHFGVGYIYNNLGAAYLEL------DRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 487 -------------------------~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
.......+.++..+|...... +..+++...|.++..+ +|..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~ 291 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSW 291 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhH
Confidence 011234456677777777777 8888899999999884 4566
Q ss_pred HHHHHHHHHHHHhc
Q 006812 536 IEACQNLSKAYSSM 549 (630)
Q Consensus 536 ~~~~~~la~~~~~~ 549 (630)
..++..+|..+...
T Consensus 292 ~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 292 EKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888776544
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.49 E-value=0.042 Score=52.90 Aligned_cols=125 Identities=21% Similarity=0.142 Sum_probs=68.5
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc-CCC---------
Q 006812 258 AFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW-GLS--------- 327 (630)
Q Consensus 258 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~--------- 327 (630)
-..+..+..+-++...+|+++.+ +.+.+|..|+.- ......+|.++++++++..+.. +..
T Consensus 177 ~AWRERnp~aRIkaA~eALei~p--------dCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINP--------DCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhh--------hhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 33456677778888888888754 334555444421 2334677888888877764431 110
Q ss_pred ---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812 328 ---------SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 328 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 394 (630)
.....+...+|.+..++|+.++|++.++..++..+.. +...+..+|..++...+.|.++...+.+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~--~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL--DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc--chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1113334455666666666666666666655543321 1233555555666666666665555544
No 249
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.003 Score=54.07 Aligned_cols=116 Identities=20% Similarity=0.130 Sum_probs=95.3
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccc---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDI---KPIMHAVHLELANVKTAMGRREEALEHLQK 232 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (630)
...++..-|+-++..|+|.+|...|..|+...+.+.-.. .|..++. .......+.+.+.|+...|+|-++++....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkE-kP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKE-KPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhcc-CCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 445778899999999999999999999999988876655 3444432 333446678899999999999999999888
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 233 CLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 233 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
.+ ..+|....+|+..|.+....=+.++|..-|.+++++.+
T Consensus 256 iL--------~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 256 IL--------RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HH--------hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 77 45566689999999999999999999999999998644
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.39 E-value=0.022 Score=54.72 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=107.5
Q ss_pred hhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC-----------
Q 006812 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH----------- 449 (630)
Q Consensus 381 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------- 449 (630)
+..+...-++...+|+++. |+.+.+|..|+.- ......+|..+|+++++..+...+...
T Consensus 180 RERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred hcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3445666677777787776 5667777766642 234467888888888877655443211
Q ss_pred -------chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 450 -------SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 450 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
+...+-..+|.+..+.|+.++|++.++..++.. ...+...+..+|..++...+.|.++...+.+.-+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 112334689999999999999999999988632 1223566889999999999999999998887533
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHh-cCC---------------HHHHHHHHHHHHHH
Q 006812 523 IMDVSLGPHHADSIEACQNLSKAYSS-MGS---------------YTLAIEFQQRAIDA 565 (630)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~ 565 (630)
+ .-|..+..++.-|.+-.+ .|+ -..|.+...+|++.
T Consensus 324 i-------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 324 I-------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred c-------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 2 234555555555544322 222 13466777777764
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.38 E-value=0.073 Score=50.40 Aligned_cols=178 Identities=13% Similarity=0.072 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812 331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN---QEKFADAKRCLEIACGILDKKETISP 407 (630)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~ 407 (630)
..+..++-..|....+|+.-+.+.+..-..-..+......+....|.++.+ .|+.++|+..+..++... .+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~---~~--- 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD---EN--- 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---CC---
Confidence 445567777899999999998888876554222222234456677777877 899999999988864432 21
Q ss_pred HHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHH
Q 006812 408 EEVADAYSEISMQYESM---------NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESA 478 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 478 (630)
..+.++..+|.+|... ...++|+..|.++.++. ++...-.|++.++...|...+...-.++.
T Consensus 215 -~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 215 -PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PDYYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred -CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------ccccchHHHHHHHHHcCCcccchHHHHHH
Confidence 2335777778777542 23667777777777652 22223367777777777655554444443
Q ss_pred HHHHHHhcCC----CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 479 AERLKESFGP----KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 479 l~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
.-.....+|. ......+.+..++.+..-.|++++|...++++..+
T Consensus 286 ~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 286 GVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3222221211 12233445567788888899999999999999875
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.37 E-value=0.011 Score=48.76 Aligned_cols=111 Identities=22% Similarity=0.207 Sum_probs=77.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCC----CC--------ChhHHHHHHHhhHHHhhccChHHHHHHHHHH
Q 006812 116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNN----RP--------SLLVAMCLQVMGSANYSFKRFSDSLGYLSKA 183 (630)
Q Consensus 116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (630)
...|......+ +.+.++..+++++.++...+-.+ .| ......++..++..+...|++++|+..++++
T Consensus 10 ~~~a~~~~~~~-~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 10 VREARAAARAG-DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34455555566 88888888888888774322111 11 0123346677888899999999999999999
Q ss_pred HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Q 006812 184 NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEE 243 (630)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 243 (630)
+.+ .|..-..+..+..+|...|+..+|+..|++......+-+|-
T Consensus 89 l~~----------------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 89 LAL----------------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHH----------------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred Hhc----------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 998 44555678889999999999999999999998887765543
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.37 E-value=0.00065 Score=39.83 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 538 ACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 538 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
++.+||.+|...|++++|+++|++++.+....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999776553
No 254
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.025 Score=47.06 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=80.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
...-..+...++..+...|++++|+..++.++.... +......+-..|+.+...+|.+++|...++....
T Consensus 85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--------- 154 (207)
T COG2976 85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIKE--------- 154 (207)
T ss_pred cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------
Confidence 333445566789999999999999999999886433 2333466778899999999999999988775321
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
+...+......|.++...|+-++|...|++++..
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 1233445566899999999999999999999985
No 255
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0025 Score=57.27 Aligned_cols=105 Identities=11% Similarity=0.141 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP 407 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 407 (630)
...+..+-.-|+-|+...+|..|...|.+.++.--.++...+..|.+.+.+....|+|..|+.-..+++.+.
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-------- 149 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-------- 149 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 345555666688888888999999999998887777777778888899988888999999988888887765
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
|....+++.-|.++....++++|..+.++.+.+
T Consensus 150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 150 PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 677788888888888888888888888887665
No 256
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.32 E-value=0.0088 Score=49.36 Aligned_cols=110 Identities=20% Similarity=0.112 Sum_probs=78.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC--------------ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKH--------------FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
.|......|+.+.++..+++++.++..-+-++. .....++..++..+...|++++|+..+++++.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~- 90 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA- 90 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-
Confidence 355556677888888888888887653322221 12234566788889999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCCchh
Q 006812 524 MDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGPSAQD 575 (630)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~ 575 (630)
.+|..-.++..+..+|...|++.+|+..|++....+.. +|..-..
T Consensus 91 -------~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 91 -------LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp -------HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred -------cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 45677789999999999999999999999999988886 6765333
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.076 Score=44.35 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (630)
.....++..+...|++++|+..++.++... .+......+-.+|+.+...+|++++|+..+..... +.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~ 156 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ES 156 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------cc
Confidence 345667888899999999999999887631 11111233458899999999999999988775443 22
Q ss_pred cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
-.+..-...|.++...|+-++|...|++++..
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 23344557799999999999999999999885
No 258
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.31 E-value=0.28 Score=50.84 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG 188 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 188 (630)
|....+...-|..+.+.| ..++|..+++. +... . +..-.++..+-.+|..++++++|..+|++++...
T Consensus 40 Pn~~~a~vLkaLsl~r~g-k~~ea~~~Le~-~~~~-----~----~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~- 107 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLG-KGDEALKLLEA-LYGL-----K----GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY- 107 (932)
T ss_pred CCcHHHHHHHHHHHHHhc-CchhHHHHHhh-hccC-----C----CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC-
Confidence 555555555777788888 89999865543 2211 1 1134466778899999999999999999998872
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHH
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEAL 227 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (630)
|. -...+.+-.+|.+.+.|.+-.
T Consensus 108 ---------------P~-eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 108 ---------------PS-EELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred ---------------Cc-HHHHHHHHHHHHHHHHHHHHH
Confidence 22 244556777888888776543
No 259
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.30 E-value=0.17 Score=49.64 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
...+..++..|++..|+..+|+.++..++-..... ..-..+..+|.++.+.|...+|--.+..|+.-
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h--------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~d----- 278 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH--------NKDIALLSLATVLHRAGFSADAAVILHAALDD----- 278 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc--------cccchhhhHHHHHHHcccccchhheeehhccC-----
Confidence 34566778888887779999999999999876443 12234567999999999999998887665543
Q ss_pred hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
.+....-++.++.++...|.+.....+|..+.+.
T Consensus 279 -----------A~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 279 -----------ADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred -----------CccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 2223333667899999999998888888876643
No 260
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.28 E-value=0.0025 Score=52.19 Aligned_cols=110 Identities=19% Similarity=0.168 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006812 468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRP---QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK 544 (630)
Q Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 544 (630)
|+.|.+.++.... .+|..++.+++-|.++..+.++ .++..+++.|+.-+++.+. -+|+..++++++|.
T Consensus 7 FE~ark~aea~y~--------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYA--------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHH--------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 4455555555444 3577788888889888877554 3455666666555444332 34777789999999
Q ss_pred HHHhc----CCHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHHHHHH
Q 006812 545 AYSSM----GSYTLAIEFQQRAIDAWESHG--PSAQDELREARRLLEQ 586 (630)
Q Consensus 545 ~~~~~----g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~A~~~~~~ 586 (630)
+|..+ .+..+|..+|++|...|+..- +...+.|++++++..+
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 98665 456788889999988888622 1223456666666554
No 261
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.27 E-value=0.21 Score=48.62 Aligned_cols=405 Identities=11% Similarity=0.023 Sum_probs=204.7
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
.+|....+|+.+-..+..+ -+++..+.|++.+..++. .+.++.......+...+|+.....|.+++.-
T Consensus 15 ~nP~di~sw~~lire~qt~--~~~~~R~~YEq~~~~FP~----------s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ--PIDKVRETYEQLVNVFPS----------SPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred cCCccHHHHHHHHHHHccC--CHHHHHHHHHHHhccCCC----------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4577778888888766666 699999999998776633 3445555667777889999999999988764
Q ss_pred HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH--------
Q 006812 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEA-------- 258 (630)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-------- 258 (630)
.-.+ .+.. ..+..+-...|+...+....-+|.+......+ -++.....|...+..
T Consensus 83 vLnl--------------DLW~--lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~g 145 (656)
T KOG1914|consen 83 VLNL--------------DLWK--LYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVG 145 (656)
T ss_pred HhhH--------------hHHH--HHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccc
Confidence 2111 1111 12444555566666666665566655544333 112112222222211
Q ss_pred -HHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH--------HHH--HHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812 259 -FVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRR--------LLG--VIYSGLEEHQKALEQNELSQKVLKTWGLS 327 (630)
Q Consensus 259 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 327 (630)
|..+.+.+.-...|++|+..--. +-..++.-|. ..| .+-.....|-.|...+++...+.+.+...
T Consensus 146 k~ee~QRI~~vRriYqral~tPm~----nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~ 221 (656)
T KOG1914|consen 146 KYEENQRITAVRRIYQRALVTPMH----NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRN 221 (656)
T ss_pred cHHHHHHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhccc
Confidence 22233566666777777641000 0000110000 011 12223445667777777666665544322
Q ss_pred -hh-----------HHHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHHhhhcch---HHHHHHHHHHHHHHhhcc
Q 006812 328 -SE-----------LLRAEIDAANMQIALG------KF--EEAINTLKGVVRQTEKESE---TRALVFISMGKALCNQEK 384 (630)
Q Consensus 328 -~~-----------~~~~~~~la~~~~~~g------~~--~~A~~~~~~~l~~~~~~~~---~~~~~~~~la~~~~~~~~ 384 (630)
+. ....+.++...-...+ .. ..-.-.+++++....-.+. ..+..+...+.++...|+
T Consensus 222 ~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d 301 (656)
T KOG1914|consen 222 APAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGD 301 (656)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcc
Confidence 11 1122222222111111 10 1112234444443332222 113334455666777777
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN---EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL 461 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 461 (630)
..+|...-.++.++.+.............+..++..-...- +++....++++.+.+.... + ..++..+-..
T Consensus 302 ~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~-----~-tLv~~~~mn~ 375 (656)
T KOG1914|consen 302 VPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID-----L-TLVYCQYMNF 375 (656)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC-----C-ceehhHHHHH
Confidence 65554444444444432211011122333444443322222 2555666667666653222 1 2345555555
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006812 462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQN 541 (630)
Q Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 541 (630)
-.+..-...|...|.++-+.- ..+....+...+- -|...++.+-|...|+-.+..+. +.|... ..
T Consensus 376 irR~eGlkaaR~iF~kaR~~~------r~~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf~-----d~p~yv---~~ 440 (656)
T KOG1914|consen 376 IRRAEGLKAARKIFKKAREDK------RTRHHVFVAAALM-EYYCSKDKETAFRIFELGLKKFG-----DSPEYV---LK 440 (656)
T ss_pred HHHhhhHHHHHHHHHHHhhcc------CCcchhhHHHHHH-HHHhcCChhHHHHHHHHHHHhcC-----CChHHH---HH
Confidence 555555778888888876621 1121222222222 25568999999999998887442 345443 33
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 542 LSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 542 la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
....+...|+-..|..+|++++..
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhc
Confidence 455667778888888888888754
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.15 Score=46.39 Aligned_cols=165 Identities=10% Similarity=-0.048 Sum_probs=119.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC-hhHHHH
Q 006812 255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS-SELLRA 333 (630)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~ 333 (630)
-+.+.+..|++.+|-...++.++- .|.-..++..--..++..|+.+.-...+++. +.....+ |-...+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kI---ip~wn~dlp~~sYv 177 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKI---IPKWNADLPCYSYV 177 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHh---ccccCCCCcHHHHH
Confidence 345566788999998888988874 3333344445556777788888777766643 3333333 666777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812 334 EIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADA 413 (630)
Q Consensus 334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (630)
...++..+...|-|++|.+..++++++.+.+ ..+...++.++...|++.++.++..+.....+.. ......-
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D----~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHN 249 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQINRFD----CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHN 249 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCCCcc----hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhh
Confidence 7788899999999999999999999975544 4466778888999999999999888765544321 1223344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 414 YSEISMQYESMNEFETAISLLKRTL 438 (630)
Q Consensus 414 ~~~la~~~~~~g~~~~A~~~~~~al 438 (630)
|...+.++...+.++.|++.|.+-+
T Consensus 250 yWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 250 YWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hHHHHHhhhcccchhHHHHHHHHHH
Confidence 5667888889999999999998643
No 263
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.25 E-value=0.11 Score=51.45 Aligned_cols=187 Identities=13% Similarity=0.049 Sum_probs=106.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812 336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS 415 (630)
Q Consensus 336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (630)
.+|.++...|++.+|.++|.+.-..........-.-.+.+++-+...|.-++-....++-.+...... .|.
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k---ePk------ 707 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK---EPK------ 707 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC---CcH------
Confidence 46788888999999999987632110000000011223444555555555554444444333222211 111
Q ss_pred HHHHHHHHcCCHHHHHHHH------HHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812 416 EISMQYESMNEFETAISLL------KRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK 489 (630)
Q Consensus 416 ~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (630)
.-|.++...|+.++|+... +-++++.+++.. .+...+..++..+.....+.-|-++|.+.-++
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~---~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------- 776 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK---AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------- 776 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch---hhhhHHHHHHHHHhhccccchHHHHHHHhccH--------
Confidence 2356677888888887653 445555555421 12234555666666666677776666654321
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSI-EACQNLSKAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 562 (630)
..+..++...+++.+|....++ +|+.. .+|+-.|..+....++++|.+.|.+|
T Consensus 777 --------ksiVqlHve~~~W~eAFalAe~------------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 --------KSLVQLHVETQRWDEAFALAEK------------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred --------HHHhhheeecccchHhHhhhhh------------CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 1345566777888888665543 33332 56777788888888888888887765
No 264
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0042 Score=53.20 Aligned_cols=111 Identities=15% Similarity=0.041 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc---c-------HHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF---G-------VGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
.++..-|+-++..|+|.+|...|..|+...+...-...| . ....+.|.+.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 466777888999999999999999999887665333222 2 223577899999999999999999988887
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812 523 IMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP 571 (630)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 571 (630)
.+|....+|+..|.++...=+.++|..-|.++++.-..+.+
T Consensus 259 --------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 --------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred --------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 67888999999999999999999999999999987555443
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.21 E-value=0.00065 Score=42.11 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006812 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK 544 (630)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 544 (630)
.++..+|.+|..+|++++|+..|+++++ .+|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--------~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--------LDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCcCCHHHHHHhhh
Confidence 3678999999999999999999999999 45666678877765
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.16 E-value=0.0015 Score=38.29 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812 413 AYSEISMQYESMNEFETAISLLKRTLALLEKL 444 (630)
Q Consensus 413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 444 (630)
++.+||.+|...|++++|+++|++++.+....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 47889999999999999999999998776544
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.15 E-value=0.046 Score=46.35 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=85.2
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC
Q 006812 325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET 404 (630)
Q Consensus 325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 404 (630)
........++..+|..|.+.|+.++|++.|.++.+... ........+..+..+....+++.....++.++..+.....
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~- 107 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG- 107 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc-
Confidence 33456677888999999999999999999999776433 3344567888888999999999999999999998887633
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
+.......-..-|..+...++|.+|...|-.+..
T Consensus 108 -d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 108 -DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred -hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 2222333444456667778999999988877654
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.14 E-value=0.28 Score=47.68 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=93.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhh---
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG-ILDKK--- 402 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~--- 402 (630)
.......+...+.+....|.++.|...+.++...........+.+....+.+....|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 45677888899999999999999999999887755333322345777788999999999999999888777 22221
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812 403 ----------------------ETISPEEVADAYSEISMQYESM------NEFETAISLLKRTLALLEKLPQAQHSEGSV 454 (630)
Q Consensus 403 ----------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 454 (630)
........+.++..+|...... +..+++...|.++..+.+.. ...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~k~ 294 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-------EKA 294 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH-------HHH
Confidence 1112234567777788877777 88888999999998863322 235
Q ss_pred HHHHHHHHHH
Q 006812 455 SARIGWLLLL 464 (630)
Q Consensus 455 ~~~la~~~~~ 464 (630)
+..+|..+..
T Consensus 295 ~~~~a~~~~~ 304 (352)
T PF02259_consen 295 WHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.10 E-value=0.0011 Score=38.39 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
+.++.++|.+|..+|++++|+..|++++++.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999755
No 270
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.08 E-value=0.0096 Score=44.39 Aligned_cols=82 Identities=17% Similarity=0.059 Sum_probs=63.5
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 006812 259 FVAVLNFKEALPFGLKALEIHKKGLGHN-SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA 337 (630)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 337 (630)
....|+|..|.+.+.+..+......... ......++.++|.++...|++++|+..+++++++.+..++......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4568999999999999998877643222 124556677899999999999999999999999999888876666666555
Q ss_pred HHH
Q 006812 338 ANM 340 (630)
Q Consensus 338 a~~ 340 (630)
..+
T Consensus 88 ~~l 90 (94)
T PF12862_consen 88 ANL 90 (94)
T ss_pred HHH
Confidence 544
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.05 E-value=0.00039 Score=39.98 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 006812 516 VFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIE 557 (630)
Q Consensus 516 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 557 (630)
+|+++++ .+|+...+++++|.+|...|++++|++
T Consensus 1 ~y~kAie--------~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE--------LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH--------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3678888 457888999999999999999999963
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.04 E-value=0.0014 Score=40.61 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGA 502 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 502 (630)
.++..+|.+|...|++++|+..|+++++ .+|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--------~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--------LDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCcCCHHHHHHhhh
Confidence 3678999999999999999999999998 35666677777764
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.03 E-value=0.002 Score=37.22 Aligned_cols=31 Identities=42% Similarity=0.601 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
.+++++|.+|..+|++++|+..|++++++-+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5899999999999999999999999998743
No 274
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.94 E-value=0.02 Score=53.08 Aligned_cols=136 Identities=12% Similarity=0.095 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812 413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL-TGKVPQAIPYLESAAERLKESFGPKHF 491 (630)
Q Consensus 413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (630)
+|..+.....+.+..+.|..+|.+|+. .......+|...|.+.+. .++.+.|..+|+.+++.+ +
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~-------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~ 67 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK-------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------P 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------C
Confidence 566667777777789999999999963 122234678888888666 566666999999999854 3
Q ss_pred cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
.....+......+...|+.+.|...|++++... . .......+|......-...|+.+....+.+++.+.+..
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSL----P-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS----S-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----C-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 344456666778889999999999999998742 1 11113357778888888999999999999999877544
No 275
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.92 E-value=0.002 Score=37.26 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
+.++..+|.++...|++++|+.+|++++.+.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999998765
No 276
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.90 E-value=0.03 Score=41.72 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=60.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 006812 217 KTAMGRREEALEHLQKCLEIKELILEED-SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRR 295 (630)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 295 (630)
....|+|..|++.+.+..+......... ......++.++|.++...|++++|+..+++++++.++.. +......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4578999999999999998876653222 124566788899999999999999999999999998753 3334444444
Q ss_pred HHHH
Q 006812 296 LLGV 299 (630)
Q Consensus 296 ~la~ 299 (630)
.+..
T Consensus 86 ~~~~ 89 (94)
T PF12862_consen 86 WLAN 89 (94)
T ss_pred HHHH
Confidence 4443
No 277
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.011 Score=53.38 Aligned_cols=106 Identities=17% Similarity=0.116 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL 326 (630)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 326 (630)
..+..+..-|+-|+...+|..|...|.+++..-. .+....+..|.|.+-+....|+|..|+.-..+++.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc----~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC----ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC----CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 4566777789999999999999999999987543 244466788999999999999999999988888876
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE 362 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 362 (630)
+|....+++.-|.+++.+.++++|..+++..+.+..
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 788899999999999999999999999988876543
No 278
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.85 E-value=0.002 Score=37.17 Aligned_cols=31 Identities=35% Similarity=0.532 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
.+++.+|.++..+|++++|+++|++++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5789999999999999999999999998753
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.79 E-value=0.0012 Score=37.98 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHH
Q 006812 475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAA 514 (630)
Q Consensus 475 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 514 (630)
|+++++ .+|....+++++|.+|...|++++|+
T Consensus 2 y~kAie--------~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--------LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--------HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 677777 35888889999999999999999986
No 280
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.79 E-value=0.031 Score=46.04 Aligned_cols=75 Identities=15% Similarity=0.027 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHH
Q 006812 205 IMHAVHLELANVKTAMGRR---EEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN----FKEALPFGLKALE 277 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~ 277 (630)
..+..+++.|.++..+.++ .++.+.++.++.-.+..+ .-+|....++.++|.+|...+. ..+|..+|++|.+
T Consensus 23 ~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 23 LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 3355666677776666544 345555555554444433 2335567889999999887653 3445555555554
Q ss_pred HHh
Q 006812 278 IHK 280 (630)
Q Consensus 278 ~~~ 280 (630)
.+.
T Consensus 102 ~Fq 104 (186)
T PF06552_consen 102 YFQ 104 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 281
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.76 E-value=0.57 Score=46.72 Aligned_cols=183 Identities=14% Similarity=0.152 Sum_probs=103.7
Q ss_pred HhhHHHhhccChHHHHHHHHHH------HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 162 VMGSANYSFKRFSDSLGYLSKA------NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.++.++...|+|.+|...|.+. ++++..+ -.+.++.-+...|.-++-....++--+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl------------------RMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL------------------RMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH------------------HHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 4788888899999999988653 3332111 112345555555655554444444333
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHH------HHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHH
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFG------LKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQK 309 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 309 (630)
..... ..|. .-|..+...|+.++|+... +-++++..++ +......+..++..+.....+.-
T Consensus 699 WAr~~---kePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 699 WARNI---KEPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred Hhhhc---CCcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccch
Confidence 22222 1121 1256667778888887653 3344444432 11112233344444444444444
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHH
Q 006812 310 ALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAK 389 (630)
Q Consensus 310 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 389 (630)
|.+.|.+ +|+. ..+..++...++|++|..+.++ .+.....+|+..|+.+....+|++|.
T Consensus 766 AaeIF~k-------~gD~-------ksiVqlHve~~~W~eAFalAe~-------hPe~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 766 AAEIFLK-------MGDL-------KSLVQLHVETQRWDEAFALAEK-------HPEFKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred HHHHHHH-------hccH-------HHHhhheeecccchHhHhhhhh-------CccccccccchHHHHhhhhhhHHHHH
Confidence 4444332 2222 2344556678888888777655 45445568888888888899999998
Q ss_pred HHHHHHH
Q 006812 390 RCLEIAC 396 (630)
Q Consensus 390 ~~~~~a~ 396 (630)
+.|.+|-
T Consensus 825 kAfhkAG 831 (1081)
T KOG1538|consen 825 KAFHKAG 831 (1081)
T ss_pred HHHHHhc
Confidence 8877653
No 282
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.73 E-value=0.03 Score=51.92 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhhcCCCcHHHH
Q 006812 333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN-QEKFADAKRCLEIACGILDKKETISPEEVA 411 (630)
Q Consensus 333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 411 (630)
+|..+.....+.+..+.|..+|.++.+ .......+|...|.+-.. .++.+.|...|+.+++.+ +...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~----~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~~~~ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK----DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------PSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------TT-H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCCH
Confidence 445555666666667888888888863 222223467777777555 556666888888888876 3344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 006812 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERL 482 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 482 (630)
..|......+...|+.+.|..+|++++.. . .... ...+|......-...|+.+....+.+++.+..
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISS---L--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCT---S--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh---c--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56666667778888888888888888763 1 1111 12467777777788888888888888777753
No 283
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.69 Score=45.38 Aligned_cols=240 Identities=13% Similarity=-0.021 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
.....-+..+...|+.+.|+..++.+++..-+ ......++.+|.++..+.+|..|...+....+...
T Consensus 268 ~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd------- 334 (546)
T KOG3783|consen 268 LWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD------- 334 (546)
T ss_pred cHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-------
Confidence 44556788888889988899999888862211 22356788899999999999999999887766432
Q ss_pred HHHHHHHHH-HHHHHh--------ccccHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 288 VEVAHDRRL-LGVIYS--------GLEEHQKALEQNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGV 357 (630)
Q Consensus 288 ~~~~~~~~~-la~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 357 (630)
-..+ .|.. .|.++. ..|+-++|-.+++....+....|.+ |.... .. .++.++-.+.
T Consensus 335 WS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f-~~------------RKverf~~~~ 400 (546)
T KOG3783|consen 335 WSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF-IV------------RKVERFVKRG 400 (546)
T ss_pred hhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH-HH------------HHHHHHhccc
Confidence 1111 1222 223332 2456677777777766666665544 22111 11 1111111110
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812 358 VRQTEKESETRALVFISMGKALCN--QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLK 435 (630)
Q Consensus 358 l~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 435 (630)
- .. .....+.-+..++.++.. .....+.. ++..........+..+..--+..+|.++...|+...|..+|.
T Consensus 401 ~-~~--~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~ 473 (546)
T KOG3783|consen 401 P-LN--ASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK 473 (546)
T ss_pred c-cc--ccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0 00 000000012222222211 11112222 222122222222444556667788999999999999999999
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHHHcCC-hhhHHHHHHHHHHH
Q 006812 436 RTLALLEKLPQAQHSEGSVSARIGWLLLLTGK-VPQAIPYLESAAER 481 (630)
Q Consensus 436 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 481 (630)
..++-......+....+.+++.+|.+|+.+|. ..++..++.+|-+.
T Consensus 474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 88866433322223336788999999999998 99999999999873
No 284
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=1.9 Score=50.38 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 006812 427 FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE 506 (630)
Q Consensus 427 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 506 (630)
..+-+-.+++++-......+-....+.+|...|.+....|+++.|..+.-.|.+. ....+....|..++.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQ 1714 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHh
Confidence 3444444555544332222223334789999999999999999999998888772 244577889999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhcC-C--------CCHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHH
Q 006812 507 LDRPQSAAQVFAFAKDIMDVSLG-P--------HHADSIEACQNLSKAYSSMGSY--TLAIEFQQRAIDAWES 568 (630)
Q Consensus 507 ~g~~~~A~~~~~~al~~~~~~~~-~--------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~ 568 (630)
.|+-..|+..+++.++....-+. + +......+...++......|++ ++-+++|+.+.++...
T Consensus 1715 ~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 99999999999999976543211 1 1111123555566666677763 3346777777776653
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.66 E-value=0.0056 Score=35.30 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
.++..+|.+|...|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999865
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.66 E-value=0.58 Score=44.04 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=90.3
Q ss_pred HHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q 006812 371 VFISMGKALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLALLE 442 (630)
Q Consensus 371 ~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 442 (630)
....++.+|.. ..+..+|..++..+.+ .......+.+|.+|.. ..+..+|..+|+++...
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-- 142 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-- 142 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc--
Confidence 44444544443 2346667777764322 1334566778887776 44888898888888774
Q ss_pred hCCCCCCch-hHHHHHHHHHHHHcC-------ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCCh
Q 006812 443 KLPQAQHSE-GSVSARIGWLLLLTG-------KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRP 510 (630)
Q Consensus 443 ~~~~~~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 510 (630)
+ ++. ......++..|..-+ +...|..+|.++... . ...+...+|.+|.. ..++
T Consensus 143 ---g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-------~---~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 143 ---G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-------G---NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred ---C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-------c---CHHHHHHHHHHHHcCCCCCcCH
Confidence 2 222 233677777776642 223677777777662 2 34577888988865 3478
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC
Q 006812 511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG 550 (630)
Q Consensus 511 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 550 (630)
.+|..+|.++-+. .+ ...++.++ ++...|
T Consensus 208 ~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 208 KKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 9999999999873 22 46788888 666665
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.63 E-value=0.006 Score=35.17 Aligned_cols=31 Identities=35% Similarity=0.599 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
.++..+|.+|..+|++++|..+|++++++-+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998754
No 288
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.92 Score=45.34 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
++.+-|.-.++..+|..++++|...+..+..- ..+...+....+|+.||..+.+.+.|.+++++|-+ .+|
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--------~d~ 425 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--------VDR 425 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--------hcc
Confidence 45666777888999999999999998754321 12344577888999999999999999999999977 334
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
...-....+..+....|.-++|+........++..
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 44445556667777889999999988887766544
No 289
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.43 E-value=0.034 Score=38.44 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
+.-....|.-++++. +.++|+..++++++...+ .++...++..+..+|...|+|.+++.+..+-+.+..++.
T Consensus 6 ak~~ie~GlkLY~~~-~~~~Al~~W~~aL~k~~~-------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQN-ETQQALQKWRKALEKITD-------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHhhcCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444566777788888 999999999999987643 246677788889999999999999999988888877664
Q ss_pred h
Q 006812 192 E 192 (630)
Q Consensus 192 ~ 192 (630)
+
T Consensus 78 d 78 (80)
T PF10579_consen 78 D 78 (80)
T ss_pred C
Confidence 3
No 290
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=1.6 Score=43.77 Aligned_cols=104 Identities=17% Similarity=0.110 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
..+.+-+...+... +|..++++|+..+...... ..+...+.....+..||..+.+.++|.+++++|-+.
T Consensus 355 ~iLWn~A~~~F~~~-~Y~~s~~~y~~Sl~~i~~D----~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~------ 423 (872)
T KOG4814|consen 355 TLLWNTAKKLFKME-KYVVSIRFYKLSLKDIISD----NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV------ 423 (872)
T ss_pred HHHHHhhHHHHHHH-HHHHHHHHHHHHHHhccch----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh------
Confidence 34455666667776 9999999999999877543 223456888899999999999999999999999887
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK 237 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 237 (630)
.|........+..+....|.-++|+..........
T Consensus 424 ----------d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 424 ----------DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ----------ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 22233344456667778889999998887766554
No 291
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.17 E-value=0.82 Score=41.53 Aligned_cols=91 Identities=15% Similarity=0.063 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 006812 426 EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL 505 (630)
Q Consensus 426 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 505 (630)
.....++++.+|++.+..... ......+...+|.-|+..|++++|..+|+.+...+++. .-..-...++..+..|+.
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAK 229 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHH
Confidence 445678888999888877633 22234456899999999999999999999997776543 223445567788899999
Q ss_pred HcCChhHHHHHHHH
Q 006812 506 ELDRPQSAAQVFAF 519 (630)
Q Consensus 506 ~~g~~~~A~~~~~~ 519 (630)
..|+.+..+.+.-+
T Consensus 230 ~~~~~~~~l~~~le 243 (247)
T PF11817_consen 230 RLGDVEDYLTTSLE 243 (247)
T ss_pred HhCCHHHHHHHHHH
Confidence 99998887765443
No 292
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=1.4 Score=41.86 Aligned_cols=191 Identities=17% Similarity=0.127 Sum_probs=138.7
Q ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
+-....+.....+.++....++..|.....+..-.+.. +.+......++..++.++.+.+..-.+..+.-.+.....+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 33444667777899999999999999999988765543 2344567778888899999888888888888888888888
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHH-------HHHHHHHhhccHHHHHHHHHH
Q 006812 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFI-------SMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~-------~la~~~~~~~~~~~A~~~~~~ 394 (630)
...+.....+-..++......|..+.|...+..++...-.+. .+.+.++. .-+.. ....+.+.+..++++
T Consensus 346 y~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s-~~~e~ld~~~~~L~~ 424 (482)
T KOG4322|consen 346 YSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALS-CANESLDGFPRYLDL 424 (482)
T ss_pred hccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhh-hhhhhHHhhHHHHHH
Confidence 777766777788899999999999999999999886543221 11111111 11111 155677888888888
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHH
Q 006812 395 ACGILDKKETISPEEVADAYSEISMQYESMNEFET---AISLLKRTLA 439 (630)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~ 439 (630)
+..++.+.. .+..+..+.+.++..|-..|+.++ +...|+++..
T Consensus 425 A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 425 AQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 888887665 455678888999999999998654 4444555443
No 293
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.95 E-value=1.7 Score=41.97 Aligned_cols=153 Identities=12% Similarity=-0.030 Sum_probs=105.9
Q ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCC---------------------CCHHHHHHHHHHHHHH
Q 006812 243 EDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGH---------------------NSVEVAHDRRLLGVIY 301 (630)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------~~~~~~~~~~~la~~~ 301 (630)
..+|....++..++.++..+|++..|.++.++|+-..+..... .+...-.+++......
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 3457778999999999999999999999999998665532111 1223445566677788
Q ss_pred hccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHH
Q 006812 302 SGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE-SETRALVFISMGKALC 380 (630)
Q Consensus 302 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~ 380 (630)
.+.|-+..|+++.+-.+.+ ....+-..+...+-....+.++|+--++.++.......+. ....+..-+..+.++.
T Consensus 114 ~~RG~~rTAlE~~KlLlsL----dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSL----DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HhcCcHHHHHHHHHHHHhc----CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 8899999999988765554 3333445566666666778888888787777655421111 1112235566667777
Q ss_pred hhccH---------------HHHHHHHHHHHHHH
Q 006812 381 NQEKF---------------ADAKRCLEIACGIL 399 (630)
Q Consensus 381 ~~~~~---------------~~A~~~~~~a~~~~ 399 (630)
..++- +.|...+.+|+..+
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 77777 88899999988776
No 294
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.93 Score=40.96 Aligned_cols=124 Identities=17% Similarity=0.120 Sum_probs=75.1
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812 298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK 377 (630)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 377 (630)
+.-....|++.+|...|..++.. .+....+...++.+|...|+.+.|...+...-................+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 44556678888888888888776 455577888899999999999999888866322111111110111112211
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
-....++......-+. ..|+....-+.+|..+...|+.++|.+.+-..+.
T Consensus 215 qaa~~~~~~~l~~~~a------------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 215 QAAATPEIQDLQRRLA------------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHhcCCCHHHHHHHHH------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222222222222111 1145556778899999999999999887765554
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.72 Score=37.82 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=95.8
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812 298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK 377 (630)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 377 (630)
|.-|+..+.-.++-..|..++++. ..+..++|+.-|...-+..-...| ..+....+.
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA---------------------~~~k~d~Alaaf~~lektg~g~Yp--vLA~mr~at 102 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA---------------------QENKTDDALAAFTDLEKTGYGSYP--VLARMRAAT 102 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH---------------------HcCCchHHHHHHHHHHhcCCCcch--HHHHHHHHH
Confidence 344566666666666666666653 446667888877776554333333 446777888
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHH
Q 006812 378 ALCNQEKFADAKRCLEIACGILDKKETISPEEV--ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSV 454 (630)
Q Consensus 378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~ 454 (630)
+....|+...|..+|..+-..... |.. -.+...-+.++...|.|+.-..-.+. +.++.+|. ...
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~------P~~~rd~ARlraa~lLvD~gsy~dV~srvep-------La~d~n~mR~sA 169 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSI------PQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-------LAGDGNPMRHSA 169 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCC------cchhhHHHHHHHHHHHhccccHHHHHHHhhh-------ccCCCChhHHHH
Confidence 999999999999999875433211 111 12334456677788888775544332 22333333 556
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 455 SARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
...||..-++.|++..|..+|.+...
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHHc
Confidence 67899999999999999999998765
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.69 E-value=0.012 Score=33.48 Aligned_cols=31 Identities=35% Similarity=0.620 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
++++.+|.++...|++++|+..|++.++.++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3688999999999999999999999987653
No 297
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=1.7 Score=40.99 Aligned_cols=141 Identities=10% Similarity=-0.076 Sum_probs=98.2
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812 259 FVAVLNFKEALPFGLKALEIHKKGLGHN--SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEID 336 (630)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 336 (630)
...+.++.+|..+-...+.-... .... +.-.+.+|+.+..+|...|+...-...+..-+....-..+........+.
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~-~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISI-QNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 34457788887776665543221 1011 11345678888889998998777666666555544333345666777778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812 337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD 400 (630)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 400 (630)
+-..|...+.|+.|.....++.--....+...+..++.+|.+..-+++|..|.+++-.|+....
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 8899999999999998887754222223446688899999999999999999999999987653
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.92 Score=41.00 Aligned_cols=148 Identities=16% Similarity=0.074 Sum_probs=89.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-h
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-G 452 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~ 452 (630)
..+.-....|++.+|...+..++... +....+...++.+|...|+.+.|...+...=. ..... .
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~-------~~~~~~~ 203 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPL-------QAQDKAA 203 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcc-------cchhhHH
Confidence 34455667889999999999988876 34456778899999999999988877654211 11101 1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 532 (630)
..+.....++.+.....+....-.++- .+|+....-+.++..+...|+.++|.+.+-..+.. ..+..+
T Consensus 204 ~~l~a~i~ll~qaa~~~~~~~l~~~~a---------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~d 271 (304)
T COG3118 204 HGLQAQIELLEQAAATPEIQDLQRRLA---------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFED 271 (304)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cccccC
Confidence 111112233334444443333322222 35767778889999999999999998887665553 222222
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 006812 533 ADSIEACQNLSKAYSSMGS 551 (630)
Q Consensus 533 ~~~~~~~~~la~~~~~~g~ 551 (630)
. .+...+-.++...|.
T Consensus 272 ~---~~Rk~lle~f~~~g~ 287 (304)
T COG3118 272 G---EARKTLLELFEAFGP 287 (304)
T ss_pred c---HHHHHHHHHHHhcCC
Confidence 2 344445555555553
No 299
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.59 E-value=0.04 Score=32.34 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530 (630)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 530 (630)
.++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999876543
No 300
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.57 E-value=0.34 Score=33.72 Aligned_cols=66 Identities=24% Similarity=0.217 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812 212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282 (630)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (630)
.-|.-++...+..+|+..++++++.. .+.++...++..+..+|...|+|.+.+.+...=+++....
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555668889999999999998654 4456778889999999999999999999988888877764
No 301
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.52 E-value=1.8 Score=39.25 Aligned_cols=186 Identities=11% Similarity=0.102 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc---h-------HHHHHHHHHHHHHHHHhc--------------
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEED---S-------RELGVANRDLAEAFVAVL-------------- 263 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g-------------- 263 (630)
.+.+.+..++...|+..+|+..+++=+.......+.. . ...+.-+..+|.+.....
T Consensus 11 ~i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~ 90 (247)
T PF11817_consen 11 FIAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGF 90 (247)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcch
Confidence 3456788999999999999999999888887765441 1 122333444555544332
Q ss_pred CHHHHHHHHHHHHHHHhhhcC-CC-------------------CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 264 NFKEALPFGLKALEIHKKGLG-HN-------------------SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~-~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
-|..|-.+...--+....... +. .+.....+................++.+++|...++.
T Consensus 91 yy~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~ 170 (247)
T PF11817_consen 91 YYQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKK 170 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHH
Confidence 122232222222222222210 00 0000111111111112233455678889999999888
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 006812 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISMGKALCNQEKFADAKRCLE 393 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~ 393 (630)
.+...........+|..|+..|++++|..+++.+.....+.. .....++..+..++...|+.+..+.+.-
T Consensus 171 ~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 171 YGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred hccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888777788888999999999999999999999987766543 4446677788888888888887766543
No 302
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.50 E-value=1.8 Score=38.88 Aligned_cols=178 Identities=16% Similarity=0.135 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHcCCChhH
Q 006812 252 NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG-LEEHQKALEQNELSQKVLKTWGLSSEL 330 (630)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~ 330 (630)
+..+|.+....|+|++.+.+.++++...... ...-.+.++.+|.. .|....+...+.....-....|. +..
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL-------t~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~ 75 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL-------TEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQ 75 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC-------CHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHH
Confidence 4567899999999999999999998863221 11223333444422 23333333333222221111111 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHhh-----c-----cHHHHHHHHH
Q 006812 331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEK-------ESETRALVFISMGKALCNQ-----E-----KFADAKRCLE 393 (630)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~~~~~la~~~~~~-----~-----~~~~A~~~~~ 393 (630)
.. +..-| ...--++-...+..++.+... +.......+-..|..|... | -.+.|...|+
T Consensus 76 ~~----~i~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~ 150 (236)
T PF00244_consen 76 VK----LIKDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYE 150 (236)
T ss_dssp HH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhh
Confidence 11 00000 000112223333334433322 2222232333345444331 2 2467899999
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Q 006812 394 IACGILDKKETISPEEVADAYSEISMQY-ESMNEFETAISLLKRTLALLE 442 (630)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~ 442 (630)
+|+.+.....++.+|.......+.+..| .-.|+.++|....+++++-..
T Consensus 151 ~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 151 EALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9999999877777777777777777665 458999999999888877543
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.46 E-value=0.032 Score=31.70 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812 333 AEIDAANMQIALGKFEEAINTLKGVVRQTE 362 (630)
Q Consensus 333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 362 (630)
+++.+|.++...|++++|+..|++++...|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 345556666666666666666666655443
No 304
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=7.8 Score=45.78 Aligned_cols=130 Identities=10% Similarity=-0.003 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL 464 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 464 (630)
..+-+-.+++++-....... -....+.+|...|++....|+++.|..++-+|.+.. ...++...|..++.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~-~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSN-LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQ 1714 (2382)
T ss_pred HHhHHHHHHHHHHHHhcccc-ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHh
Confidence 44444455555443322211 124788999999999999999999999988887631 23477889999999
Q ss_pred cCChhhHHHHHHHHHHHHHHhcCCC---CccH------HHHHHHHHHHHHHcCChh--HHHHHHHHHHHHH
Q 006812 465 TGKVPQAIPYLESAAERLKESFGPK---HFGV------GYIYNNLGAAYLELDRPQ--SAAQVFAFAKDIM 524 (630)
Q Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~---~~~~------~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~ 524 (630)
.|+-..|+..+++.++.....+... .|.. ..+...++.-....|+++ +-+.+|..+.++.
T Consensus 1715 ~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 9999999999999997553221111 1111 123334444444555532 3446666666654
No 305
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.16 E-value=0.078 Score=31.12 Aligned_cols=35 Identities=29% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
.++..||.+-...++|++|+.-|++++++.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 47889999999999999999999999999888754
No 306
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=95.05 E-value=4.1 Score=40.44 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhCC----CCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc---HHHHHHHH
Q 006812 428 ETAISLLKRTLALLEKLP----QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG---VGYIYNNL 500 (630)
Q Consensus 428 ~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~l 500 (630)
++...+++.|+..+.+.. ........+....+.++...|.+.+|...+-+.....- ..... .+..+..+
T Consensus 272 ~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~ 347 (414)
T PF12739_consen 272 DEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQA 347 (414)
T ss_pred ccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHH
Confidence 456667777777666621 11112244557778888889998888887766665321 01122 44455566
Q ss_pred HHHH--HHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 501 GAAY--LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 501 ~~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
|.+| ........-..-+ ...+--+..-|.-|.+.|+...|..+|.+|+.++...
T Consensus 348 a~~~~~~~~~~~~~~~~r~---------------RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 348 AYCYASLRSNRPSPGLTRF---------------RKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred HHhhcccccCCCCccchhh---------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 6666 1110000000001 1111122333678999999999999999999998753
No 307
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.88 E-value=3.5 Score=38.78 Aligned_cols=167 Identities=19% Similarity=0.122 Sum_probs=109.3
Q ss_pred HhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 006812 301 YSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMG 376 (630)
Q Consensus 301 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 376 (630)
....+++..+...+..+... ........++.+|.. ..+..+|..+|+.+.+. ..+...+.||
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~------g~~~a~~~lg 116 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD------GLAEALFNLG 116 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc------ccHHHHHhHH
Confidence 34456777777777665441 112555666766664 34578888888854432 1233677788
Q ss_pred HHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHhCC
Q 006812 377 KALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN-------EFETAISLLKRTLALLEKLP 445 (630)
Q Consensus 377 ~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~ 445 (630)
.+|.. ..+..+|..+|.++..... +.-..+...++.+|..-. +...|...|.++-...
T Consensus 117 ~~~~~G~gv~~d~~~A~~~~~~Aa~~g~-------~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---- 185 (292)
T COG0790 117 LMYANGRGVPLDLVKALKYYEKAAKLGN-------VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---- 185 (292)
T ss_pred HHHhcCCCcccCHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----
Confidence 88887 4588999999999876531 111344677777776542 2336788887776641
Q ss_pred CCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812 446 QAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD 508 (630)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 508 (630)
.......+|.+|.. ..++.+|..+|.++.+. .+ ....+.++ ++...|
T Consensus 186 -----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 -----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred -----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 33477888988866 34789999999999882 22 55777888 666666
No 308
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.83 E-value=0.46 Score=35.80 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=58.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC----Chh-------HHHHHHHHHHHHHHH
Q 006812 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD----RPQ-------SAAQVFAFAKDIMDV 526 (630)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~-------~A~~~~~~al~~~~~ 526 (630)
.+.-++..|++-+|+++.+..+.... ++......+..-|.++..+. +.+ .++++|.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~---- 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE---- 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc----
Confidence 35678899999999999999887432 22222245556677765543 333 34455555544
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 527 SLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 527 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
-.|..+..++.+|.-+.....|+++..-.++++.+
T Consensus 73 ----Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 73 ----LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ----cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 34666677777777666555666666666665543
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.82 E-value=1.8 Score=36.89 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHH
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAK 389 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 389 (630)
...+.....+|..|. ..+.++++.++.++++....+....+.++..|+.++..+|+++.|-
T Consensus 138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456778888888776 7788999999999999988775555779999999999999999874
No 310
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.67 E-value=5.9 Score=40.45 Aligned_cols=28 Identities=14% Similarity=-0.003 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 205 IMHAVHLELANVKTAMGRREEALEHLQK 232 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (630)
..-.++.++|..+..+-.|++|.++|.+
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666666666666666666655
No 311
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.66 E-value=0.015 Score=52.85 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=79.1
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006812 460 WLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEAC 539 (630)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 539 (630)
.-.+..|.+++|++.|..++. .+|..+..+...+.++..+++...|+.-+..+++ .+|+.+.-|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~--------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--------in~Dsa~~y 185 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIE--------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--------INPDSAKGY 185 (377)
T ss_pred HHHhcCcchhhhhcccccccc--------cCCchhhhcccccceeeeccCCchhhhhhhhhhc--------cCccccccc
Confidence 334567889999999999997 4688888999999999999999999999999998 467888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 540 QNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
-..+.....+|++++|...+..++++
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHhc
Confidence 88899999999999999999999854
No 312
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.66 E-value=3.1 Score=37.29 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHH
Q 006812 510 PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY-SSMGSYTLAIEFQQRAIDAWES-HGPSAQDELREARRLLEQL 587 (630)
Q Consensus 510 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~A~~~~~~~ 587 (630)
.+.|...|++|+++....+.+.||.......+.+..| ...|+.++|.+..++|++-.-. +..-....+.++..+++.+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlL 221 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLL 221 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence 4789999999999999989999999888877777665 6699999999999999876554 3322335577788877777
Q ss_pred HHHh
Q 006812 588 KIKA 591 (630)
Q Consensus 588 ~~~~ 591 (630)
+...
T Consensus 222 rdNl 225 (236)
T PF00244_consen 222 RDNL 225 (236)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 313
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.66 E-value=2.1 Score=35.25 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=99.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 006812 256 AEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEI 335 (630)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (630)
|.-|+..+.-.++-..|..+|++... +..++|+..|.. ++..|-......+..
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~~-----------------------~k~d~Alaaf~~----lektg~g~YpvLA~m 98 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQE-----------------------NKTDDALAAFTD----LEKTGYGSYPVLARM 98 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHHc-----------------------CCchHHHHHHHH----HHhcCCCcchHHHHH
Confidence 45566777777777777777765543 344555554443 333344444456677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812 336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS 415 (630)
Q Consensus 336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (630)
..+.+....|+...|+..|.++-...+......-.+...-+.++...|-|++.....+. ..++..|....+..
T Consensus 99 r~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-------La~d~n~mR~sArE 171 (221)
T COG4649 99 RAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-------LAGDGNPMRHSARE 171 (221)
T ss_pred HHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhh-------ccCCCChhHHHHHH
Confidence 88899999999999999998876543322222233455556777888888776554332 22333455666778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 416 EISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 416 ~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
.||..-.+.|++.+|...|.....
T Consensus 172 ALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHHHc
Confidence 889999999999999999988665
No 314
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.52 E-value=3.7 Score=37.53 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=105.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 006812 219 AMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLG 298 (630)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 298 (630)
++++|++|++.+... +..+.+.|++..|.++..-.++.+.+...+.+. ....+++
T Consensus 2 ~~kky~eAidLL~~G----------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~---~~~~rl~ 56 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG----------------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDE---ESIARLI 56 (260)
T ss_dssp HTT-HHHHHHHHHHH----------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SH---HHHHHHH
T ss_pred ccccHHHHHHHHHHH----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence 456777777665553 344555556666665555555555542211111 1223444
Q ss_pred HHHhccccHH-HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812 299 VIYSGLEEHQ-KALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK 377 (630)
Q Consensus 299 ~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 377 (630)
.+....+.-+ +-..+..++++..+..+........+..+|..+++.|++.+|..++-..- ++. ..++..+-.
T Consensus 57 ~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-----~~~--~~~~~~ll~ 129 (260)
T PF04190_consen 57 ELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-----DPS--AFAYVMLLE 129 (260)
T ss_dssp HHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHH--HHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-----Chh--HHHHHHHHH
Confidence 4444443222 23455666666663323335677888888999999999888887774321 111 111111111
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----CC------C
Q 006812 378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL----PQ------A 447 (630)
Q Consensus 378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~------~ 447 (630)
.....|...+. .........-|...++...|...+..-.+..... .. .
T Consensus 130 ~~~~~~~~~e~----------------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~ 187 (260)
T PF04190_consen 130 EWSTKGYPSEA----------------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPP 187 (260)
T ss_dssp HHHHHTSS--H----------------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEES
T ss_pred HHHHhcCCcch----------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCC
Confidence 11112221111 1112222234566788888888777766552211 10 1
Q ss_pred CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD 508 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 508 (630)
..|.... ..+-..-+..+ +...|....+.+...+. .+|.....+..+|..|+...
T Consensus 188 ~~PllnF-~~lLl~t~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 188 SYPLLNF-LQLLLLTCERD----NLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp S-HHHHH-HHHHHHHHHHT-----HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH---
T ss_pred CCchHHH-HHHHHHHHhcC----cHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCCC
Confidence 1121111 11222223333 34566666665555433 24566677788888887654
No 315
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.51 E-value=0.055 Score=51.80 Aligned_cols=93 Identities=13% Similarity=0.033 Sum_probs=47.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Q 006812 296 LLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISM 375 (630)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 375 (630)
+-+.....-++++.|+..|.+|++ .+|..+..+.+.+..+...+++..|+.-+.++++. .+....+|+..
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~------ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~----dP~~~K~Y~rr 78 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIE------LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL----DPTYIKAYVRR 78 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHh------cCCcceeeechhhhhheeechhhhHHHHHHhhhhc----Cchhhheeeec
Confidence 444445555555555555554443 33444445555555555555555555555555552 23334455555
Q ss_pred HHHHHhhccHHHHHHHHHHHHHH
Q 006812 376 GKALCNQEKFADAKRCLEIACGI 398 (630)
Q Consensus 376 a~~~~~~~~~~~A~~~~~~a~~~ 398 (630)
|.+....+.+.+|...|+....+
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhc
Confidence 55555555555555555544433
No 316
>PRK14707 hypothetical protein; Provisional
Probab=94.44 E-value=13 Score=43.54 Aligned_cols=361 Identities=12% Similarity=0.059 Sum_probs=183.1
Q ss_pred HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812 161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI 240 (630)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (630)
..++++.-.+++|.++..+-.-+..+...+..+. +... ...-..++.++...++|.+...+-.-++.+...+
T Consensus 835 Q~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~------~LR~--aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL 906 (2710)
T PRK14707 835 QHVATVLNAMSKWPDNAVCAAAAGAMAERLADEP------ELRH--TLTAHGVVIVLNALSKWPNVPVCAAAASALAERL 906 (2710)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCh------hhhh--ccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHH
Confidence 4567777788888888887777777776654433 1110 1112346778888888888777777777777666
Q ss_pred hccchHHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH--HHHHHHHHhccccHHHHHHHHHH
Q 006812 241 LEEDSRELGV--ANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD--RRLLGVIYSGLEEHQKALEQNEL 316 (630)
Q Consensus 241 ~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~ 316 (630)
. +++.... .-..+++++-...+|.++-.+-.-+..+...+.. .+..... -..++++...++++.+.-.+-.-
T Consensus 907 ~--~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~A 982 (2710)
T PRK14707 907 A--DEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEV 982 (2710)
T ss_pred h--cCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHH
Confidence 3 3333332 2345677777777777766555555555554432 2222221 23456666667777666666655
Q ss_pred HHHHHHHcCCChhHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHhhh--cchHH--HHHHHHHHHHHHhhccHHHHHH
Q 006812 317 SQKVLKTWGLSSELLRA--EIDAANMQIALGKFEEAINTLKGVVRQTEK--ESETR--ALVFISMGKALCNQEKFADAKR 390 (630)
Q Consensus 317 a~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~--~~~~~~la~~~~~~~~~~~A~~ 390 (630)
+..+...+..++..... -..+++++..+.+|.++-.+-.-+..+... ..+.. +..-..++.++....+|.+...
T Consensus 983 A~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~ 1062 (2710)
T PRK14707 983 VDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPV 1062 (2710)
T ss_pred HHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchh
Confidence 55665555444333222 234566666666665433333222222211 11111 1122344555555556655444
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChh
Q 006812 391 CLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVP 469 (630)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~ 469 (630)
+-.-+..+.........-..+..-..++.++...-+|.+.-.+-..++.+...+.....+. ......++.+.-...+|.
T Consensus 1063 Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp 1142 (2710)
T PRK14707 1063 CLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWP 1142 (2710)
T ss_pred HHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCC
Confidence 4333333333211000000111123345555555566666666666666666664433332 222355666666666665
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 470 QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 470 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
....+=.-+..+.........-..+..-..++..+-...++.+.-.+-+-++.+....-....|
T Consensus 1143 ~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P 1206 (2710)
T PRK14707 1143 GTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELP 1206 (2710)
T ss_pred CchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCC
Confidence 5444444444444433221111111122355666666666666666655555555544333333
No 317
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.40 E-value=9.6 Score=41.74 Aligned_cols=109 Identities=16% Similarity=0.004 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL 190 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 190 (630)
+...++.....+.... .|+.|+..|++.-.-+ ++.. +--.+.+.+|.....+-.-..--+.|.+|+.-++.+
T Consensus 474 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 474 LRVSCLAVPDAFLAEK-LYDQALIFYRRIRESF-----PGRK--EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL 545 (932)
T ss_pred eeeecccCcHHHHhhH-HHHHHHHHHHHHhhcC-----CCcc--cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 3445666777777776 8999999998855444 2222 234466778888776544443346777888777777
Q ss_pred hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK 237 (630)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 237 (630)
.+.. ....-|...|.+|..+|+|++-+++|.-|++-+
T Consensus 546 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 546 HGGV----------GAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred cCCC----------CCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 5543 222346678889999999999999999998765
No 318
>PRK14707 hypothetical protein; Provisional
Probab=94.37 E-value=14 Score=43.44 Aligned_cols=341 Identities=14% Similarity=0.099 Sum_probs=182.0
Q ss_pred HhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 006812 162 VMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELIL 241 (630)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (630)
.++.++-...+|.+...+-+-+..+...+..+. +.. ....--.+++++...++|.++..+-..+..+....
T Consensus 794 ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp------~Lr--~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RL- 864 (2710)
T PRK14707 794 EMTNALNALSKWPDTPACAAAASALAARVADDP------RLR--EAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERL- 864 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhcCh------hHH--HhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHH-
Confidence 345555556667666666666666666554322 110 11112357788888888888777777777776655
Q ss_pred ccchHHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHH--HHHHHHHHHhccccHHHHHHHHHHH
Q 006812 242 EEDSRELGVA--NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAH--DRRLLGVIYSGLEEHQKALEQNELS 317 (630)
Q Consensus 242 ~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a 317 (630)
...+..... -..++.++.-.+++.+...+-.-++.+...+. +.+.... .-..++++...+.++.++-.+-.-+
T Consensus 865 -a~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa 941 (2710)
T PRK14707 865 -ADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEPELRKALSAHRVATALNALSKWPDIPVCATAA 941 (2710)
T ss_pred -hcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCHHHHhhccHHHHHHHHhhhccCCCchHHHHHH
Confidence 333333222 24466777777788887777777777666554 2222222 2234566666666766655555555
Q ss_pred HHHHHHcCCChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chH--HHHHHHHHHHHHHhhccHHHHHHH
Q 006812 318 QKVLKTWGLSSELLRAE--IDAANMQIALGKFEEAINTLKGVVRQTEKE--SET--RALVFISMGKALCNQEKFADAKRC 391 (630)
Q Consensus 318 ~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~--~~~~~~~la~~~~~~~~~~~A~~~ 391 (630)
..+...+..++.....+ ..+++++..+++|.+...+-.-+..+.... .+. ....-..++.++....+|.++-.+
T Consensus 942 ~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~C 1021 (2710)
T PRK14707 942 SALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVC 1021 (2710)
T ss_pred HHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHH
Confidence 56666665555444333 356777777777766544443333222211 010 111223445555555666555444
Q ss_pred HHHHHHHHHhhcCCCcHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCCh
Q 006812 392 LEIACGILDKKETISPEEVAD--AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKV 468 (630)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~ 468 (630)
-.-+..+...... .+.... .-..++.++....+|.+.-.+-.-+..+...+....... ...-..++.++-...+|
T Consensus 1022 r~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKW 1099 (2710)
T PRK14707 1022 AATVEALAARLSN--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKW 1099 (2710)
T ss_pred HHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcC
Confidence 4444444443221 122211 123455566666666655444444444444432211111 11225677788888888
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH
Q 006812 469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV 516 (630)
Q Consensus 469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 516 (630)
.+.-.+-+-++.+....-...++.....-..++.+.....++.....+
T Consensus 1100 P~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~c 1147 (2710)
T PRK14707 1100 PDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQAC 1147 (2710)
T ss_pred CCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHH
Confidence 887777777777776664443443333344555555555555543333
No 319
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.25 E-value=0.66 Score=35.00 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=48.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812 338 ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ----EKFADAKRCLEIACGILDKKETISPEEVADA 413 (630)
Q Consensus 338 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (630)
|.-++..|++-+|+++.+..+...+++... ...+..-|.++..+ .+.+-=..++.-+++-+.+..... |..+..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~-~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls-p~~A~~ 80 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESS-WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS-PDSAHS 80 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCch-HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC-hhHHHH
Confidence 444566677777777777766655443321 12333444444332 222222233333333333222212 455667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 414 YSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 414 ~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
++.+|.-+.....|+++..-.++++.
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77776655444455555555555544
No 320
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.22 E-value=5.6 Score=38.42 Aligned_cols=140 Identities=15% Similarity=0.002 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHH-HhhHHHhhccChHHHHHHHHHHHHHHhHhhh
Q 006812 114 VGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQ-VMGSANYSFKRFSDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 114 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 192 (630)
.+...|-++..++ ++.+|...|.+..+-.... +....-..+. .+-++| - -+.++..+..+...++..+
T Consensus 8 llc~Qgf~Lqkq~-~~~esEkifskI~~e~~~~-----~f~lkeEvl~grilnAf-f----l~nld~Me~~l~~l~~~~~ 76 (549)
T PF07079_consen 8 LLCFQGFILQKQK-KFQESEKIFSKIYDEKESS-----PFLLKEEVLGGRILNAF-F----LNNLDLMEKQLMELRQQFG 76 (549)
T ss_pred HHHHhhHHHHHHh-hhhHHHHHHHHHHHHhhcc-----hHHHHHHHHhhHHHHHH-H----HhhHHHHHHHHHHHHHhcC
Confidence 3455677777887 9999999999876554321 1111112222 222222 2 2334444444444444433
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHH----------HHHHHHHHHHHHHHh
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE----------LGVANRDLAEAFVAV 262 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----------~~~~~~~la~~~~~~ 262 (630)
.. .....-.|...++.+.|.+|++.+...-+-.... ..+. ....-...+.+....
T Consensus 77 ~s------------~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~ 141 (549)
T PF07079_consen 77 KS------------AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIET 141 (549)
T ss_pred Cc------------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhc
Confidence 22 2344557888899999999998776543321111 1110 011223457888999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 006812 263 LNFKEALPFGLKALEIH 279 (630)
Q Consensus 263 g~~~~A~~~~~~al~~~ 279 (630)
|+|.++...+++.+...
T Consensus 142 g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 142 GRFSEGRAILNRIIERL 158 (549)
T ss_pred CCcchHHHHHHHHHHHH
Confidence 99999999999877643
No 321
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.17 E-value=0.05 Score=52.08 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
-+-+.-.+.-+.|+.|+..|.++++ -+|..+..+.+.+.++.+.+++..|+.-+.+|++ ..|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~--------ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--------~dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIE--------LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--------LDPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHh--------cCCcceeeechhhhhheeechhhhHHHHHHhhhh--------cCchh
Confidence 4456667788899999999999998 3566677778888999999999999999999999 56888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 536 IEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
..+|+.-|.+....+++.+|...|+....+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 889988899999999999988888777654
No 322
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.17 E-value=7 Score=39.30 Aligned_cols=125 Identities=12% Similarity=0.040 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
+..+.+..++.+...+-.. -|..-..|...+..-.+.|..+.+...|++++.-+.-. ..
T Consensus 56 ~~~~~~~~~r~~y~~fL~k------yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S---------------vd 114 (577)
T KOG1258|consen 56 DSIEDVDALREVYDIFLSK------YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS---------------VD 114 (577)
T ss_pred CchhHHHHHHHHHHHHHhh------CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH---------------HH
Confidence 4455556666655554322 24455566778888889999999999999998863311 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (630)
.....++.+-...|+.+.-...|++|.......+-. ...+-..-..-..++++..-...|++.+++
T Consensus 115 lW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S-----~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 115 LWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLS-----DPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhc-----cHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 112223444446677777677777777654322111 122222223335566677777777776664
No 323
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.17 E-value=5.8 Score=38.33 Aligned_cols=151 Identities=16% Similarity=0.098 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC---------------------CCcHHHHHHHHHHHHHHHH
Q 006812 365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET---------------------ISPEEVADAYSEISMQYES 423 (630)
Q Consensus 365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~ 423 (630)
.|....++..++.++..+|+...|.+++++|+-.++.... ......-.++........+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 3444556667777777777777777777776655542110 0111233455666777889
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCC-CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 006812 424 MNEFETAISLLKRTLALLEKLPQAQ-HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGA 502 (630)
Q Consensus 424 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 502 (630)
.|-+..|.++.+-.+.+ ++. .|. .+...+=....+.++|+--+.+++..........-..-|+ ..+..+.
T Consensus 116 RG~~rTAlE~~KlLlsL-----dp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~aL 186 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL-----DPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIAL 186 (360)
T ss_pred cCcHHHHHHHHHHHHhc-----CCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHHH
Confidence 99999999999888876 333 222 3455555666777888777777765544211000001232 4557788
Q ss_pred HHHHcCCh---------------hHHHHHHHHHHHHH
Q 006812 503 AYLELDRP---------------QSAAQVFAFAKDIM 524 (630)
Q Consensus 503 ~~~~~g~~---------------~~A~~~~~~al~~~ 524 (630)
++...++- ++|...+.+|+..+
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 88888888 89999999998754
No 324
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.04 E-value=0.98 Score=34.47 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=60.2
Q ss_pred HHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 006812 160 LQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL 239 (630)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 239 (630)
+..+|...++.+++-.++-.|++|+.+.+++.... ..+..|........+.+|+..+..+|+.+-.++|++-|-+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~-~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESN-EIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccc-cccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 35688889999999999999999999988884332 12222333344467789999999999999999999877655444
Q ss_pred H
Q 006812 240 I 240 (630)
Q Consensus 240 ~ 240 (630)
.
T Consensus 83 L 83 (140)
T PF10952_consen 83 L 83 (140)
T ss_pred h
Confidence 3
No 325
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.01 E-value=7.1 Score=38.77 Aligned_cols=173 Identities=13% Similarity=0.064 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHHHHHHhhcC-
Q 006812 335 IDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISMGKALCNQEKF-------ADAKRCLEIACGILDKKET- 404 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~~~~~- 404 (630)
..+|++++..++|+-|...|+.+.+.+..+. ...+.+....|.+....+.. ++...+++.|...+.....
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~ 291 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALP 291 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcc
Confidence 3456666666666666666666665553322 22233444444444444422 3666777777777665211
Q ss_pred --CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc---hhHHHHHHHHHH--HHcCChhhHHHHHHH
Q 006812 405 --ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS---EGSVSARIGWLL--LLTGKVPQAIPYLES 477 (630)
Q Consensus 405 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A~~~~~~ 477 (630)
..+.....+....+.++...|.+.+|...+-+.....- ..... .+.++..+|.+| ........-..-
T Consensus 292 ~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l---~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r--- 365 (414)
T PF12739_consen 292 RCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL---ESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTR--- 365 (414)
T ss_pred ccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH---hhhhhhHhhHHHHHHHHHhhcccccCCCCccchh---
Confidence 11123445666777888888998888777666655321 01111 233445555555 111000000000
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 478 AAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 478 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
....+.-+..-|.-|...|+...|..+|.+++.++.
T Consensus 366 ------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 366 ------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 112233344557889999999999999999999875
No 326
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.88 E-value=0.027 Score=51.22 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=74.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCC
Q 006812 118 IALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGG 197 (630)
Q Consensus 118 ~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 197 (630)
.+...+..| ++++|++.|..++.+. |..+..+...+.++..+++...|+..+..++.+
T Consensus 120 ~A~eAln~G-~~~~ai~~~t~ai~ln----------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei----------- 177 (377)
T KOG1308|consen 120 QASEALNDG-EFDTAIELFTSAIELN----------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI----------- 177 (377)
T ss_pred HHHHHhcCc-chhhhhcccccccccC----------CchhhhcccccceeeeccCCchhhhhhhhhhcc-----------
Confidence 344455666 9999999999988654 456778888999999999999999999999988
Q ss_pred CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 198 SVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
.+..+..|-..|.....+|+|++|...+..+.++
T Consensus 178 -----n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 178 -----NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred -----CcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 3333455667889999999999999999988754
No 327
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=5.6 Score=36.55 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
..+...++.+.+..|++.|+-+.|.+.+.+...-.-..|...+.......+|.+|....-..+.++-.+..++..+.- +
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDW-e 178 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDW-E 178 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCh-h
Confidence 346678888999999999999999999999888777788888888889999999987776666666666666544321 1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812 367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDK 401 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 401 (630)
..-..-..-|.......+|.+|...|-.++..+..
T Consensus 179 RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 11112223344555667888888888877766543
No 328
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=9.1 Score=38.02 Aligned_cols=259 Identities=14% Similarity=0.025 Sum_probs=148.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812 294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI 373 (630)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 373 (630)
++.....+...++.+. +...+++..... ..|..+.....-+.++...|+.+.|+..+...++ ..........+.
T Consensus 234 y~~~~~~~~~~p~~d~--~~~~~~Ll~~~~--~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~f 307 (546)
T KOG3783|consen 234 YYQFISFVLGTPNPDG--EECEKALKKYRK--RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVF 307 (546)
T ss_pred HHHHHHHHcCCCCccH--HHHHHHhHHHHH--hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHH
Confidence 3344445555555554 222222222211 1244555666778888888998888888888877 333444566888
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-HHH--------HHcCCHHHHHHHHHHHHHHHHhC
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEIS-MQY--------ESMNEFETAISLLKRTLALLEKL 444 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~~~~~~ 444 (630)
.+|.++..+.+|..|-..+....+..+-. . ..|..++ -++ ...|+-++|..+++....+....
T Consensus 308 E~aw~~v~~~~~~~aad~~~~L~desdWS-------~-a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a 379 (546)
T KOG3783|consen 308 ERAWLSVGQHQYSRAADSFDLLRDESDWS-------H-AFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA 379 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhhh-------H-HHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc
Confidence 89999999999999998888766554211 1 1222222 222 22446666766666665555443
Q ss_pred CCCCCchhHHHHHHHHHHHHcCC---------------------hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 006812 445 PQAQHSEGSVSARIGWLLLLTGK---------------------VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA 503 (630)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 503 (630)
. ...|.-.....-+.-+...+. -.-+..-..++..-...-.-.+..+..--+..+|.+
T Consensus 380 ~-K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~ 458 (546)
T KOG3783|consen 380 G-KNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVI 458 (546)
T ss_pred c-ccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 2 111211111222222222221 000111111111111110011223344456788999
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH
Q 006812 504 YLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS-YTLAIEFQQRAIDAWES 568 (630)
Q Consensus 504 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 568 (630)
+..+|+...|..+|..+++-.. ....+.--.+-+++.+|..|..+|. ..++..++.+|-+....
T Consensus 459 lR~Lg~~~~a~~~f~i~~~~e~-~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 459 LRNLGDSEVAPKCFKIQVEKES-KRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHcCCHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 9999999999999998886422 2122333445799999999999999 99999999999766533
No 329
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.20 E-value=8.7 Score=37.23 Aligned_cols=136 Identities=16% Similarity=0.197 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHH--HHHHHHHHHH--hh
Q 006812 328 SELLRAEIDAANMQIALGK-FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKR--CLEIACGILD--KK 402 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~a~~~~~--~~ 402 (630)
...+.-+...|.-++..|. -++|+++++.++...+-+......+....-. .|.+|.. .+.+.+.+.. ..
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq------~Y~qaLs~~~~~rLlkLe~fi~e 449 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQ------AYKQALSMHAIPRLLKLEDFITE 449 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHH------HHHHHHhhhhHHHHHHHHHHHHh
Confidence 4566677778888999998 7889999998887655443222222222212 2233321 1222222211 11
Q ss_pred cCCCc--HHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812 403 ETISP--EEVADAYSEI--SMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES 477 (630)
Q Consensus 403 ~~~~~--~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (630)
.|..+ ......-+.+ |..++.+|++.++.-+-.=..++ .|.+.++..+|.+.....+|++|..++..
T Consensus 450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------APSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 11111 1122233333 45677899999988766555444 23556889999999999999999998875
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.94 E-value=0.51 Score=28.84 Aligned_cols=41 Identities=34% Similarity=0.486 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812 540 QNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ 586 (630)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~ 586 (630)
.+||..|..+|+.+.|.+.+++.+. ........+|..++.+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~------~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE------EGDEAQRQEARALLAQ 43 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH------cCCHHHHHHHHHHHhc
Confidence 5789999999999999999999984 1234556677777654
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.82 E-value=1.9 Score=36.78 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006812 468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS 547 (630)
Q Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 547 (630)
-++|...|-++-. ....+.+.....||..|. ..+.++|+..+.+++++... ++.-..+++..|+.+|.
T Consensus 122 d~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 122 DQEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQ 189 (203)
T ss_pred cHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHH
Confidence 3666666554432 344566778888888776 67899999999999997643 32233478899999999
Q ss_pred hcCCHHHHH
Q 006812 548 SMGSYTLAI 556 (630)
Q Consensus 548 ~~g~~~~A~ 556 (630)
.+|+++.|.
T Consensus 190 ~~~~~e~AY 198 (203)
T PF11207_consen 190 KLKNYEQAY 198 (203)
T ss_pred Hhcchhhhh
Confidence 999999885
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.53 E-value=0.21 Score=27.70 Aligned_cols=29 Identities=38% Similarity=0.669 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
.++..+|.++...|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999875
No 333
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.38 E-value=5.5 Score=37.87 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---
Q 006812 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT--- 323 (630)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--- 323 (630)
.+-.++..+|..|...|+++.|++.|.++-+.+. ....+...+.++-.+-...|+|..-..+..+|......
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT-----s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCT-----SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc-----chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 4467889999999999999999999999877765 34466777778888888899998888888777665211
Q ss_pred c-CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 324 W-GLSSELLRAEIDAANMQIALGKFEEAINTLKGVV 358 (630)
Q Consensus 324 ~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 358 (630)
. ..-+....+.. |.+.+.+++|..|..++-.+.
T Consensus 223 ~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 223 LAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence 0 11122233333 334445557777777765543
No 334
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=11 Score=36.00 Aligned_cols=140 Identities=15% Similarity=0.066 Sum_probs=98.0
Q ss_pred hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH
Q 006812 169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSREL 248 (630)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (630)
...++.+|...-+..+.-.. ..+. ....-..+.+|+.+..+|...|+...-...+..-+... .+..+....
T Consensus 138 d~K~~kea~~~~~~~l~~i~-~~nr------RtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~q 208 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASIS-IQNR------RTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQ 208 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hcch------hhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhH
Confidence 45788888877766544311 1111 12233456778888899999998766655555544433 344555667
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL 321 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 321 (630)
+...+.|-..|...+.|+.|.....++.- +. ...+.+.+..++.+|.+..-+++|..|.+++-+|+...
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~--pe--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVY--PE--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccC--cc--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 78888899999999999999988776541 11 11233778888999999999999999999999988863
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.21 E-value=0.2 Score=27.76 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIH 279 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (630)
.++..+|.++...|++++|+..+++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 357889999999999999999999998753
No 336
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.16 E-value=2.1 Score=35.01 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
+..+..+..+-...++.+++..++.-.-- -.|.....-..-|.++...|++.+|+..++.... .
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrv--------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--------~ 73 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRV--------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--------R 73 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH--------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------c
Confidence 34556677777788899998888765443 2366666777889999999999999999999755 4
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHhcCCC
Q 006812 532 HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKASGAS 595 (630)
Q Consensus 532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 595 (630)
.|....+-..++.|+..+|+.+ +-.-|-+..+.-.+ ..++.+...+..+.....
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~----Wr~~A~evle~~~d------~~a~~Lv~~Ll~~~~~~~ 127 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPS----WRRYADEVLESGAD------PDARALVRALLARADLEP 127 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChH----HHHHHHHHHhcCCC------hHHHHHHHHHHHhccccc
Confidence 4544456677899999999863 22223333333211 235566666666655443
No 337
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.96 E-value=2.9 Score=34.26 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=63.7
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
.+...+..+..+-...++.+++...+.-.-.+ .|.....-..-|.++...|+|.+|+..++...
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------------RPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45666777788888889999998888665555 33344555568999999999999999999854
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFK 266 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (630)
...+....+--.++.|+...|+.+
T Consensus 72 --------~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 72 --------ERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --------ccCCCChHHHHHHHHHHHHcCChH
Confidence 333444455556777887777654
No 338
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.89 E-value=2 Score=42.67 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=73.1
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812 413 AYSEISMQY-ESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491 (630)
Q Consensus 413 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (630)
.+.+++..| ..+|+..+|..++..++-+... +..-.++..+|.++.+.|...+|--++..|+. +-+
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~-----h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~--------dA~ 280 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSR-----HNKDIALLSLATVLHRAGFSADAAVILHAALD--------DAD 280 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc-----ccccchhhhHHHHHHHcccccchhheeehhcc--------CCc
Confidence 344555555 4579999999999999887433 33334778999999999999999888877766 223
Q ss_pred cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
....-++.++.++..+|++.....+|..+.+.
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 33334678888999999988888888877653
No 339
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=10 Score=34.26 Aligned_cols=132 Identities=13% Similarity=0.082 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC
Q 006812 266 KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG 345 (630)
Q Consensus 266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 345 (630)
++-++-+.+.++-.+... ...+.+.++.++|..|.+.++.+.+.++..+..+-.-..|...+...+...+|.+|..+.
T Consensus 92 eeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~ 169 (412)
T COG5187 92 EEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRK 169 (412)
T ss_pred HHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHH
Confidence 344445555555444322 234677889999999999999999999999988877777888888888888999998877
Q ss_pred CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812 346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILD 400 (630)
Q Consensus 346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 400 (630)
-.++.++..+..++....- +..-..-...|.......+|.+|...+-..+..+.
T Consensus 170 vV~e~lE~~~~~iEkGgDW-eRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 170 VVEESLEVADDIIEKGGDW-ERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHhCCCH-HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 7777777777777654332 11112222345555666788888888777766554
No 340
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=91.42 E-value=4.2 Score=31.21 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD-------SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
+..+|......+++-.++-.|++|+.+.++....+..+ .+....+||..+..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999999999988774222111 22467899999999999999999999888776665
Q ss_pred CCC
Q 006812 570 GPS 572 (630)
Q Consensus 570 ~~~ 572 (630)
-|.
T Consensus 84 iPQ 86 (140)
T PF10952_consen 84 IPQ 86 (140)
T ss_pred ccC
Confidence 553
No 341
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=12 Score=34.61 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC
Q 006812 205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG 284 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (630)
....++.+.+..|.+.|+-+.|++.+.+..+-.-.. ...-++.-....+|..|....-..+.+ +++-.+.++-.+
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~~lV~~~i---ekak~liE~GgD 176 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDHDLVTESI---EKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccHHHHHHHH---HHHHHHHHhCCC
Confidence 345677788888888888888888888765433322 333455555666776665544333333 333333333111
Q ss_pred CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812 285 HNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320 (630)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 320 (630)
-+..+...+| -|.......++.+|-..|-.++..
T Consensus 177 WeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 177 WERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHccc
Confidence 1111222222 233444455666666666554443
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.36 E-value=2.6 Score=27.09 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
+.++.+|..+.+.|+|++|..+.+.++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 36788999999999999999999999995
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.30 E-value=0.39 Score=25.39 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQR 561 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~ 561 (630)
.+...+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3678899999999999999988763
No 344
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.19 E-value=14 Score=35.18 Aligned_cols=171 Identities=11% Similarity=-0.017 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHH
Q 006812 408 EEVADAYSEISMQYESMNE------------FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYL 475 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (630)
|....+|..+....-..-. .+.-+.+|++|++. ++.....+..+-....+..+.++...-+
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-------np~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-------NPDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555666666554433221 34455667777764 1122344455555566666777777778
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHH
Q 006812 476 ESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH----------HADSIEACQNLSKA 545 (630)
Q Consensus 476 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~ 545 (630)
++++.. .++.+..-..|...-......-.+......|.+++.......... ......++..+...
T Consensus 89 e~~l~~-----~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 89 EELLFK-----NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHH-----CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 877762 122333222222222222333468899999999988766554332 23344677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCCch-hHHHHHHHHHHHHHHH
Q 006812 546 YSSMGSYTLAIEFQQRAIDAWESHGPSAQ-DELREARRLLEQLKIK 590 (630)
Q Consensus 546 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~A~~~~~~~~~~ 590 (630)
....|-.+.|+..++-.+++---.++... ....+....|+...+.
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWeS 209 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWES 209 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhCc
Confidence 99999999999999999886443222211 1112566667666555
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.00 E-value=0.31 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHH
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFA 518 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~ 518 (630)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998876
No 346
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.97 E-value=4.4 Score=38.45 Aligned_cols=109 Identities=10% Similarity=0.101 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP 407 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 407 (630)
...-.++..+|.-|...|+.+.|++.|-++-.... ........+.++..+-...|+|.....+..+|............
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT-s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCT-SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc-chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 34456677788888888888888888888544333 33344667777777777888888877777776655211000000
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRT 437 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 437 (630)
.-.+.....-|.+....++|..|..++-.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 001122333444455566888888877654
No 347
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.90 E-value=0.8 Score=44.13 Aligned_cols=74 Identities=15% Similarity=-0.064 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
++..|.+++.-+|||..|++.++..---....+....+-...+++.+|-+|..+++|.+|+..|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999999887542211222223334455789999999999999999999999998666553
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.80 E-value=19 Score=35.97 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812 372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE 451 (630)
Q Consensus 372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 451 (630)
...++..+.++|-.+.|+.....- .....| ..+.|+.+.|.+..++ ...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rFeL---Al~lg~L~~A~~~a~~------------~~~ 346 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP----------------DHRFEL---ALQLGNLDIALEIAKE------------LDD 346 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H----------------HHHHHH---HHHCT-HHHHHHHCCC------------CST
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh----------------HHHhHH---HHhcCCHHHHHHHHHh------------cCc
Confidence 445566666677666666543321 122222 3466777666544321 112
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
...|..||.....+|+++-|.++|+++-+
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34777888888888888888887776543
No 349
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.77 E-value=6.1 Score=37.71 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=79.0
Q ss_pred hhHHHhhccChHHHHHHHHHHHHHHhHhhhcC--CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812 163 MGSANYSFKRFSDSLGYLSKANRMLGRLEEEG--LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI 240 (630)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (630)
=|..++++++|..|..-|..+++++.+..-.. ..+...|.......+.-.|..||..+++.+-|+....+.+.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l---- 257 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL---- 257 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence 45667788899999999999988877644322 133344444455566778999999999999999998888743
Q ss_pred hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812 241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279 (630)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (630)
+|....-+..-|.++....+|.+|-..+--+.=++
T Consensus 258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677888999999999987765554443
No 350
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.69 E-value=17 Score=35.11 Aligned_cols=124 Identities=17% Similarity=0.068 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCC---ChhHHHHHHHhhHHHhhccC---hHHHHHHHHHHHHH
Q 006812 113 LVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRP---SLLVAMCLQVMGSANYSFKR---FSDSLGYLSKANRM 186 (630)
Q Consensus 113 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~ 186 (630)
..++..|..+.... .|++|+.++-.|-+.+..+ ...- -...+..-..+-+||+.+.+ .++|..-+..+-+-
T Consensus 164 lg~hekaRa~m~re-~y~eAl~~LleADe~F~~C--d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 164 LGLHEKARAAMERE-MYSEALLVLLEADESFSLC--DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HhHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHhh--hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 44556677777777 8999998888776665443 1000 00122222345677777665 45676666666555
Q ss_pred HhHhhhcC-------CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812 187 LGRLEEEG-------LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELI 240 (630)
Q Consensus 187 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (630)
+....+.+ ..+..|+ ...+...+..-|.+.+.+|+-++|.++++.+.......
T Consensus 241 f~~syGenl~Rl~~lKg~~spE-raL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPE-RALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChh-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 55444433 1222333 23444667778999999999999999999988766554
No 351
>PF13041 PPR_2: PPR repeat family
Probab=90.68 E-value=1.1 Score=28.45 Aligned_cols=30 Identities=10% Similarity=0.033 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
++.+|+.+-..|.+.|++++|.++|++..+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456889999999999999999999999886
No 352
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.59 E-value=12 Score=33.52 Aligned_cols=207 Identities=12% Similarity=0.116 Sum_probs=109.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHH-hhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812 373 ISMGKALCNQEKFADAKRCLEIACGILD-KKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLALLEKLPQAQHS 450 (630)
Q Consensus 373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 450 (630)
..++.+....++|++...+..++.++.. ... ...-.+.+..+|-. .|....+...+.. ++..+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eL------t~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~-- 75 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEEL------TVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNE-- 75 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccC------CHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCch--
Confidence 4466777778888888888887766421 111 11222333333322 3444444444443 22111111110
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC--cc-HHHHHHHHHHHHHH-----cCC-----hhHHHHHH
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH--FG-VGYIYNNLGAAYLE-----LDR-----PQSAAQVF 517 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~-~~~~~~~l~~~~~~-----~g~-----~~~A~~~~ 517 (630)
-...+..-|.. .=-++=..+...++.+....+-+.. +. .+..+-..|..|.- .|+ .+.|...|
T Consensus 76 ---~~~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY 151 (244)
T smart00101 76 ---DHVASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY 151 (244)
T ss_pred ---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 01111111111 0012334455556666555443331 11 11122223333322 222 56899999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHhc
Q 006812 518 AFAKDIMDVSLGPHHADSIEACQNLSKA-YSSMGSYTLAIEFQQRAIDAWES-HGPSAQDELREARRLLEQLKIKAS 592 (630)
Q Consensus 518 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~ 592 (630)
+.|.++....+.+.||.......+.+.. |.-+++.++|.+..++|+.-.-. +..-..+.+.++..+++.++....
T Consensus 152 ~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~ 228 (244)
T smart00101 152 KSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLT 228 (244)
T ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHH
Confidence 9999998888889999888777777655 45679999999888777754433 222234557777777777766543
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.57 E-value=16 Score=36.52 Aligned_cols=130 Identities=14% Similarity=-0.009 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE 289 (630)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (630)
...++..+.++|..+.|+...+. | ..-+ .+..+.|+.+.|.+..++ . +.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D-------------~---~~rF---eLAl~lg~L~~A~~~a~~-------~---~~-- 346 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD-------------P---DHRF---ELALQLGNLDIALEIAKE-------L---DD-- 346 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS--------------H---HHHH---HHHHHCT-HHHHHHHCCC-------C---ST--
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC-------------h---HHHh---HHHHhcCCHHHHHHHHHh-------c---Cc--
Confidence 44677788888888888776332 1 1222 234567787777655422 1 22
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812 290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA 369 (630)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 369 (630)
...|..||.....+|+++-|.++|.++-.. ..+..+|...|+.+.-.++...+... ..
T Consensus 347 -~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------~~L~lLy~~~g~~~~L~kl~~~a~~~----~~--- 404 (443)
T PF04053_consen 347 -PEKWKQLGDEALRQGNIELAEECYQKAKDF--------------SGLLLLYSSTGDREKLSKLAKIAEER----GD--- 404 (443)
T ss_dssp -HHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------HHHHHHHHHCT-HHHHHHHHHHHHHT----T----
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------cccHHHHHHhCCHHHHHHHHHHHHHc----cC---
Confidence 246778899999999999999988874443 34566777777765544444443321 11
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHH
Q 006812 370 LVFISMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 370 ~~~~~la~~~~~~~~~~~A~~~~~~ 394 (630)
++..-.++...|+.++....+.+
T Consensus 405 --~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 --INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHH
Confidence 11112334445666666665554
No 354
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=26 Score=37.08 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=35.1
Q ss_pred HHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 179 YLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 179 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
.|.-|+.+++....+. .....+....|..++..|++++|...|-+++..
T Consensus 349 ly~~Ai~LAk~~~~d~---------d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDE---------DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hHHHHHHHHHhcCCCH---------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3455555655443222 345677778899999999999999999998743
No 355
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.55 E-value=2.4 Score=27.31 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
+.++.+|..+.+.|+|++|..+.+.++++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3578899999999999999999999999755
No 356
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.30 E-value=10 Score=34.74 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCC
Q 006812 493 VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGP 571 (630)
Q Consensus 493 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~ 571 (630)
...++..++..+...|+++.+++.+++.+. .+|..-..|..+-..|...|+...|+..|++.-+.... +|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 345778899999999999999999999888 56777789999999999999999999999999886444 555
Q ss_pred CchhHHHHHHHHHHHH
Q 006812 572 SAQDELREARRLLEQL 587 (630)
Q Consensus 572 ~~~~~~~~A~~~~~~~ 587 (630)
+... ++..+|.++
T Consensus 224 ~P~~---~~~~~y~~~ 236 (280)
T COG3629 224 DPAP---ELRALYEEI 236 (280)
T ss_pred CccH---HHHHHHHHH
Confidence 4322 345566665
No 357
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.29 E-value=14 Score=33.76 Aligned_cols=96 Identities=14% Similarity=-0.028 Sum_probs=49.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812 215 NVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFK-EALPFGLKALEIHKKGLGHNSVEVAHD 293 (630)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (630)
..+.+.|++.-|.+...-.++...+...+.+ ......+..+....+.-+ +-..+..++++.. + .+.........
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~L 92 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPEL 92 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHH
Confidence 3344555555555555444444443211111 122344555554444322 3455666777766 2 22333344567
Q ss_pred HHHHHHHHhccccHHHHHHHHH
Q 006812 294 RRLLGVIYSGLEEHQKALEQNE 315 (630)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~ 315 (630)
+..+|..|++.|++.+|..+|-
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHH
Confidence 8889999999999999988774
No 358
>PF12854 PPR_1: PPR repeat
Probab=90.29 E-value=0.62 Score=26.64 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=25.6
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLES 477 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (630)
.|+..+|..+...|.+.|+.++|.+++++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35667899999999999999999999875
No 359
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.11 E-value=8.6 Score=36.76 Aligned_cols=120 Identities=14% Similarity=0.087 Sum_probs=79.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC---c---cH----HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKH---F---GV----GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 527 (630)
=|..++++++|..|..-|..++++..+..--.. + +. ..+-..|..||.++++.+-|+..-.+.+.
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~----- 256 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN----- 256 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh-----
Confidence 355677888888888888888887765421111 1 11 22345789999999999999999988877
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812 528 LGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ 586 (630)
Q Consensus 528 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~ 586 (630)
-+|....-+..-|.++..+.+|.+|..-+--+.-++.-.|.+ ...+.+-+++|-+
T Consensus 257 ---lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~-~q~~S~lIklyWq 311 (569)
T PF15015_consen 257 ---LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGS-EQRISKLIKLYWQ 311 (569)
T ss_pred ---cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHhHHHHHHHHHH
Confidence 446555666677888888888888877666555444433322 2334445555544
No 360
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=90.00 E-value=10 Score=31.66 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=83.2
Q ss_pred ccHHHHH-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHH
Q 006812 383 EKFADAK-RCLEIACGILDKKETISPEEVADAYSEISMQYES-----MNEFETAISLLKRTLALLEKLPQAQHSEGSVSA 456 (630)
Q Consensus 383 ~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 456 (630)
|+|-+++ +-|+.|..++...-..+ ..+.+.+.+|..+.. .++...|+..+..+-+. + ......
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-------n--~~~aC~ 109 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-------N--IPQACR 109 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-------C--CHHHHh
Confidence 3443433 35566666665443222 234556666665442 45688888888887652 1 223556
Q ss_pred HHHHHHHHc-----CC--hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----------------------
Q 006812 457 RIGWLLLLT-----GK--VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL---------------------- 507 (630)
Q Consensus 457 ~la~~~~~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------------- 507 (630)
.+|.+++.. ++ ..+|++++.++.++ ....+.+.|...|..-
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~ 179 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGS 179 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhh
Confidence 677766542 22 56788888877662 1222344444444322
Q ss_pred --CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHH
Q 006812 508 --DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM----GSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 508 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~ 568 (630)
.+.+.|..+-.+|-++ .+| .+..++.+.|..- .+.++|..+-.+|.++.+.
T Consensus 180 ~~kDMdka~qfa~kACel-------~~~---~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e 236 (248)
T KOG4014|consen 180 LSKDMDKALQFAIKACEL-------DIP---QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEE 236 (248)
T ss_pred hhHhHHHHHHHHHHHHhc-------CCh---HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHH
Confidence 3344444444444432 223 5666666666432 3456666666666666655
No 361
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=89.83 E-value=0.69 Score=44.29 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006812 476 ESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS 547 (630)
Q Consensus 476 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 547 (630)
-+++-+.+.++|+.||++.......|-+|..+|+++..++.++-|+++.++.+.|-.|.+...+...+.++.
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 356677788899999998877778899999999999999999999999999999999998888888877763
No 362
>PF13041 PPR_2: PPR repeat family
Probab=88.99 E-value=2.2 Score=26.97 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 006812 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL 462 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 462 (630)
.+|+.+-..|.+.|++++|.++|++..+ ..-.|+..++..+-..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~------~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK------RGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH------cCCCCCHHHHHHHHHHH
Confidence 5788889999999999999999999886 23445556666555443
No 363
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=88.92 E-value=14 Score=42.58 Aligned_cols=191 Identities=14% Similarity=0.015 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHHh--
Q 006812 206 MHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP---FGLKALEIHK-- 280 (630)
Q Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~~-- 280 (630)
..+..-.+|..+...|.+.+|+..|..|+++.+.. .|+-..+.++-.++.+..-.+....-.. ..........
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 34566679999999999999999999999999886 7888888888888776654433221110 0000000000
Q ss_pred -----hhcC---CCCHHHH----------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006812 281 -----KGLG---HNSVEVA----------HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI 342 (630)
Q Consensus 281 -----~~~~---~~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 342 (630)
.... ...|... ....++. ..-...+++++.+|.++...........-..++....+.++.
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~--~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLP--NLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCH--hhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 0000 0000000 0000111 111234677888887765443332222334566666777777
Q ss_pred HcC--------------------CHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812 343 ALG--------------------KFEEAINTLKGVVRQTEK--ESETRALVFISMGKALCNQEKFADAKRCLEIACGILD 400 (630)
Q Consensus 343 ~~g--------------------~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 400 (630)
... .-.++..+..+++...-. ...+....|..+|.+|...|-..++.-+++.++...-
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 666 677777788777764432 2345577899999999999998888777777766553
No 364
>PF12854 PPR_1: PPR repeat
Probab=88.20 E-value=1.1 Score=25.55 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~a 562 (630)
.+|..|...|.+.|+.++|.+++++.
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 48999999999999999999998863
No 365
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.08 E-value=14 Score=30.85 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=81.2
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHHH-----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-
Q 006812 434 LKRTLALLEKLPQAQHSEGSVSARIGWLLLL-----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL- 507 (630)
Q Consensus 434 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 507 (630)
|++|..+++..-++ .......+.+|..++. .++...|++.+..+.+ .....+..++|.++..-
T Consensus 51 F~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~----------~n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 51 FQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD----------ANIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc----------cCCHHHHhhhhhhhccCc
Confidence 44444444444322 2233456666665543 4567888888888776 22334666777777643
Q ss_pred ----CC--hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc------------------------CCHHHHHH
Q 006812 508 ----DR--PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM------------------------GSYTLAIE 557 (630)
Q Consensus 508 ----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------------g~~~~A~~ 557 (630)
++ .++|.+++.++-++ ....+.+.|...|..- .+.+.|.+
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ 189 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 22 67888888888653 2224555555555433 56688888
Q ss_pred HHHHHHHH-----------HHHcCCCchhHHHHHHHHHHHHHHH
Q 006812 558 FQQRAIDA-----------WESHGPSAQDELREARRLLEQLKIK 590 (630)
Q Consensus 558 ~~~~al~~-----------~~~~~~~~~~~~~~A~~~~~~~~~~ 590 (630)
+--+|.++ .-.+|+..+.+..+|..+-.++.+.
T Consensus 190 fa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 190 FAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 88777643 2236666667777777766665444
No 366
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=87.91 E-value=20 Score=32.25 Aligned_cols=180 Identities=17% Similarity=0.099 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Q 006812 335 IDAANMQIALGKFEEAINTLKGVVRQT-EKESETRALVFISMGKALCN-QEKFADAKRCLEIACGILDKKETISPEEVAD 412 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 412 (630)
..+|.+..+.++|++.+...+++++.. +.. ....-.+.+..+|.. .|....+...+.. ++......+ ....
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~e--Lt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~--~~~~-- 77 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEE--LTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRG--NEDH-- 77 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCcc--CCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccC--chHH--
Confidence 346677777888888888888877642 111 111122333333332 3444444444333 111111111 0000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC--chhHH--HHHHHHHHHH-----cCC-----hhhHHHHHHHH
Q 006812 413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH--SEGSV--SARIGWLLLL-----TGK-----VPQAIPYLESA 478 (630)
Q Consensus 413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~--~~~la~~~~~-----~g~-----~~~A~~~~~~a 478 (630)
..+..-|. ..=-++=.......+.+.....-+.. +...+ +-..|..|.- .|+ .++|...|+.|
T Consensus 78 --~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A 154 (244)
T smart00101 78 --VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSA 154 (244)
T ss_pred --HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 01111111 01112334455566666544432221 12222 2334444432 222 45889999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHH
Q 006812 479 AERLKESFGPKHFGVGYIYNNLGAAYLE-LDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 479 l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~ 524 (630)
.++....+.+.||-......+.+..|+. +++.++|....++|.+-.
T Consensus 155 ~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 155 QDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9998887888899777766677666655 699999998888877643
No 367
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.71 E-value=10 Score=36.80 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=91.0
Q ss_pred HHHHHHHhhHHHhhc-cChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHH----HHHHHHHcCCHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSF-KRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLE----LANVKTAMGRREEALEHL 230 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~ 230 (630)
...++-.+|..|... .+.-.|..++.++++....-.+..+.+..+ .|..+.-+.. ....-.-.++.++ .-
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~--~p~~ay~~~re~~~~~elE~lv~D~d~---~R 318 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPL--EPVLAYGYGREVNNREELEELVEDPDE---MR 318 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCC--CchhhhhhhhhcCCHHHHHHHhcChHH---HH
Confidence 345666677776543 346778899999988755511111111111 2222211111 1111111222221 12
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh
Q 006812 231 QKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYS 302 (630)
Q Consensus 231 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 302 (630)
-+++-+.+.++++.+|++.......|-+|...|+++..++++.-|+++.++.+.+-++..+..+...+.++.
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 346667788899999988877778899999999999999999999999999888888888777777666654
No 368
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=87.69 E-value=6.8 Score=27.76 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-c--C---CCchhHHHHHHHHHHHHHHHh
Q 006812 539 CQNLSKAYSSMGSYTLAIEFQQRAIDAWES-H--G---PSAQDELREARRLLEQLKIKA 591 (630)
Q Consensus 539 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~---~~~~~~~~~A~~~~~~~~~~~ 591 (630)
+.+.|..+...|+.++|+.+|++++..... + . ......+++|..+-++|....
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~ 69 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNL 69 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 344455566779999999999999998877 2 1 124467899999999887653
No 369
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.45 E-value=24 Score=32.60 Aligned_cols=111 Identities=10% Similarity=-0.000 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL 326 (630)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 326 (630)
.++.+...||.+|...++|..|-..+.- +.........+.......+..+|.+|...++..+|..+..++--+.....+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 4567788999999999999998776532 111110001122244566788999999999999999998887665544433
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVV 358 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 358 (630)
+.-........|.+.-..++|-+|...|.+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455777777788877776666544
No 370
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.17 E-value=53 Score=36.34 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKK 281 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (630)
++.+..|.....+-.-..--..|.+|+..++... +.+...--|...|.+|...|+|++-++.+.-|++.+++
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 513 EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 5566777776654333322355666666666553 33433445777889999999999999999999988773
No 371
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.85 E-value=11 Score=30.49 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812 409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488 (630)
Q Consensus 409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (630)
.+...+..+...-...++.+++...+...--+.+ ..+ .+-..-|.++...|+|.+|+..++...+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP-----~~~--e~d~~dg~l~i~rg~w~eA~rvlr~l~~-------- 72 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRP-----NLK--ELDMFDGWLLIARGNYDEAARILRELLS-------- 72 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----Ccc--ccchhHHHHHHHcCCHHHHHHHHHhhhc--------
Confidence 3445555555556668899998888776544422 222 2445678899999999999999998776
Q ss_pred CCccHHHHHHHHHHHHHHcCCh
Q 006812 489 KHFGVGYIYNNLGAAYLELDRP 510 (630)
Q Consensus 489 ~~~~~~~~~~~l~~~~~~~g~~ 510 (630)
..+.....--.++.|+..+|+.
T Consensus 73 ~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 73 SAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCCchHHHHHHHHHHHhcCCh
Confidence 2233344445667777777764
No 372
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.76 E-value=47 Score=35.30 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 006812 313 QNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE 362 (630)
Q Consensus 313 ~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 362 (630)
.|.-|+.+++..+.+ ..........|.-++..|++++|...|-+.+...+
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 455566677776666 44566777889999999999999999999886543
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.58 E-value=8.9 Score=34.76 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCCch
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGPSAQ 574 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~ 574 (630)
.+...+..|...|.+.+|+++.++++. -+|-.-..+..|-.++..+|+--.|...|++.-+..+. +|-+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 445667889999999999999999998 45666788899999999999999999999998877666 665443
Q ss_pred h
Q 006812 575 D 575 (630)
Q Consensus 575 ~ 575 (630)
+
T Consensus 353 d 353 (361)
T COG3947 353 D 353 (361)
T ss_pred h
Confidence 3
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.51 E-value=31 Score=32.93 Aligned_cols=124 Identities=14% Similarity=-0.011 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc
Q 006812 224 EEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG 303 (630)
Q Consensus 224 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 303 (630)
+.-+.+|++|++.. ++++ ..+..+-.......+.++...-+++++...+ +.+.+...|...-.....
T Consensus 48 E~klsilerAL~~n-----p~~~---~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-----~~~~LW~~yL~~~q~~~~ 114 (321)
T PF08424_consen 48 ERKLSILERALKHN-----PDSE---RLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-----GSPELWREYLDFRQSNFA 114 (321)
T ss_pred HHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHhc
Confidence 44556666666441 3333 3333334444556677777777888777533 455666655555555555
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCC------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 304 LEEHQKALEQNELSQKVLKTWGLS------------SELLRAEIDAANMQIALGKFEEAINTLKGVVRQ 360 (630)
Q Consensus 304 ~g~~~~A~~~~~~a~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (630)
.-.+......|.+++..+...... .....++..++......|..+.|+..++-.++.
T Consensus 115 ~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 115 SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 667888899999988876554222 234455556666666777777777777766664
No 375
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.48 E-value=13 Score=35.80 Aligned_cols=133 Identities=21% Similarity=0.099 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHH
Q 006812 205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE---EDSRELGVANRDLAEAFVAVLNF---KEALPFGLKALEI 278 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~ 278 (630)
.++..++..|.+......|++|+.++-.|-+.+...-. ..-...+..-..+-+||+...+. ..|..-+..+-+-
T Consensus 161 mmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 161 MMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 34556677888888999999999888777655432100 11112233344556777766543 3444443333333
Q ss_pred Hhhh-----------cCCCCHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 006812 279 HKKG-----------LGHNSVEVA---HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA 337 (630)
Q Consensus 279 ~~~~-----------~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 337 (630)
+... .+...|+.+ ..+..-|.+.+.+|+-++|.++++.+...+..+..+.........+
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~m 313 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGM 313 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHc
Confidence 2222 234445433 4445568889999999999999999888877776665544444433
No 376
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.44 E-value=5.2 Score=29.36 Aligned_cols=34 Identities=12% Similarity=-0.144 Sum_probs=25.4
Q ss_pred CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
.+|....+.+.+|..+...|++++|++.+-.++.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3566777888888888888888888888877665
No 377
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.24 E-value=41 Score=34.16 Aligned_cols=384 Identities=10% Similarity=-0.050 Sum_probs=200.6
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG 188 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 188 (630)
|..-..|-..+..-+..| ..+.+++.|++++.-.+-. ...-...+..+--..|+.+.-...|++|.....
T Consensus 76 Pl~~gyW~kfA~~E~klg-~~~~s~~Vfergv~aip~S---------vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG 145 (577)
T KOG1258|consen 76 PLCYGYWKKFADYEYKLG-NAENSVKVFERGVQAIPLS---------VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVG 145 (577)
T ss_pred ccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhH---------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcc
Confidence 667778888888888888 9999999999999877432 111122233334466777777777777777632
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHH
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEA 268 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 268 (630)
.-.-.. ..+-..-..-..++++..-...|++.+++-...+ ..++..=.-+.+. +-..-
T Consensus 146 ~dF~S~-------------~lWdkyie~en~qks~k~v~~iyeRileiP~~~~--------~~~f~~f~~~l~~-~~~~~ 203 (577)
T KOG1258|consen 146 LDFLSD-------------PLWDKYIEFENGQKSWKRVANIYERILEIPLHQL--------NRHFDRFKQLLNQ-NEEKI 203 (577)
T ss_pred cchhcc-------------HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh--------HHHHHHHHHHHhc-CChhh
Confidence 211111 2222333333566777777777777765432211 0011000000000 00111
Q ss_pred HHHHHHHHHHHhhhcCC----CCHHHHHHH-HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 006812 269 LPFGLKALEIHKKGLGH----NSVEVAHDR-RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA 343 (630)
Q Consensus 269 ~~~~~~al~~~~~~~~~----~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 343 (630)
+-..++++++....... ........+ ..+-.+-...+.++++.....+...+ .=.++..
T Consensus 204 l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~----------------~~~~~~~ 267 (577)
T KOG1258|consen 204 LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI----------------HEKVYQK 267 (577)
T ss_pred hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH----------------HHHHHHh
Confidence 11111222111110000 000000000 00000111111122222111111111 1112222
Q ss_pred cCCHHHHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 006812 344 LGKFEEAINTLKGVVRQTE----KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISM 419 (630)
Q Consensus 344 ~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 419 (630)
.....+.+..++..+...- .........|......-...|+++.....+++++--+ ......|...+.
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~ 339 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYAR 339 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHH
Confidence 3333444444444443211 1122224456666677778899999988888887665 345578888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812 420 QYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN 499 (630)
Q Consensus 420 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 499 (630)
.....|+.+-|...+..+.++.... . ..+...-+..-...|++..|...+++..+ ..|....+-..
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~----~--~~i~L~~a~f~e~~~n~~~A~~~lq~i~~--------e~pg~v~~~l~ 405 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKK----T--PIIHLLEARFEESNGNFDDAKVILQRIES--------EYPGLVEVVLR 405 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCC----C--cHHHHHHHHHHHhhccHHHHHHHHHHHHh--------hCCchhhhHHH
Confidence 8888899998888888887764322 1 23445556667778999999999998877 23666655556
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHH-HHhcCCHHHHHHHHHHHHHH
Q 006812 500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSI-EACQNLSKA-YSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~-~~~~g~~~~A~~~~~~al~~ 565 (630)
-.....++|+.+.+.. +....... .-|..++... ..+...++. +.-.++.+.|...+.+++++
T Consensus 406 ~~~~e~r~~~~~~~~~-~~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 406 KINWERRKGNLEDANY-KNELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred HHhHHHHhcchhhhhH-HHHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 6667778888888874 22222211 1122333332 344455544 45677888999888888755
No 378
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.21 E-value=3 Score=40.35 Aligned_cols=74 Identities=22% Similarity=0.116 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 527 (630)
+...|.+++.-.|+|..|++.++..---....+....+....+++.+|-+|..+++|.+|++.|...+....+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999876532111112222344556688999999999999999999999988765443
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.20 E-value=9.1 Score=35.04 Aligned_cols=72 Identities=22% Similarity=0.196 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 532 (630)
.++..++..+...|+++.+++.+++.+. .+|..-..+..+-..|...|+...|+..|++......+-+|...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence 4778899999999999999999999887 45666778889999999999999999999999887666666443
No 380
>PRK10941 hypothetical protein; Provisional
Probab=86.18 E-value=5.4 Score=36.51 Aligned_cols=72 Identities=15% Similarity=0.010 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
-+...+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.++|.+..|..-++..++..+.++.
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 34566778888999999999999999888877 6777777788899999999999999999999888776554
No 381
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.78 E-value=9.9 Score=30.72 Aligned_cols=87 Identities=15% Similarity=0.012 Sum_probs=55.3
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
+...+..+...-...++.+++...+...--+ . |.....-..-|.++...|+|.+|+..++...
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL---------r-------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~- 71 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL---------R-------PNLKELDMFDGWLLIARGNYDEAARILRELL- 71 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------C-------CCccccchhHHHHHHHcCCHHHHHHHHHhhh-
Confidence 3444555555566688888888877655444 2 2223334457889999999999999998855
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHH
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFK 266 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 266 (630)
.+.+.....--.++.|+...|+.+
T Consensus 72 -------~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 72 -------SSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -------ccCCCchHHHHHHHHHHHhcCChH
Confidence 222222344445667777666643
No 382
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=85.53 E-value=33 Score=34.58 Aligned_cols=73 Identities=16% Similarity=0.066 Sum_probs=51.2
Q ss_pred HHHHHHHHHHH--cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812 496 IYNNLGAAYLE--LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP 571 (630)
Q Consensus 496 ~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 571 (630)
++.+||.+-.- ...-..++++|.+|+...+..++..|. --|..+|-.|.+.+++.+|+..+-+|-.+...+..
T Consensus 279 ALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY 353 (618)
T PF05053_consen 279 ALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNY 353 (618)
T ss_dssp HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB-
T ss_pred hhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34444444332 233566789999999999888876543 46778899999999999999999999999888544
No 383
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.86 E-value=13 Score=27.26 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
+|....+.+.+|..+...|++++|++.+-.++...+.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 6777888889999999999999999888888775443
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.77 E-value=3.7 Score=25.17 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 335 IDAANMQIALGKFEEAINTLKGVVR 359 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~~~~~~l~ 359 (630)
..+|..|...|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4577777788888888888877774
No 385
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.01 E-value=33 Score=31.19 Aligned_cols=132 Identities=13% Similarity=0.114 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhcc
Q 006812 307 HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEK 384 (630)
Q Consensus 307 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~ 384 (630)
-++-++-+++.++-.+..+-......++.++|..|.+.++.+.+.+++.+.++..-.. ..+....-..||.+|..+.-
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~v 170 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKV 170 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHH
Confidence 3444555555555555444456778899999999999999999999999988754332 22334455566777665554
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
.++.++ .+-.+.++....+......+ ..|.......++.+|-.++...+..+..
T Consensus 171 V~e~lE---~~~~~iEkGgDWeRrNRyK~--Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 171 VEESLE---VADDIIEKGGDWERRNRYKV--YKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHH---HHHHHHHhCCCHHhhhhHHH--HHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 444444 34444444332222222233 3455666777888888888877765443
No 386
>PRK10941 hypothetical protein; Provisional
Probab=83.99 E-value=13 Score=34.15 Aligned_cols=67 Identities=12% Similarity=0.002 Sum_probs=54.4
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
.+...+.++-.+|...++++.|+.+.+..+.+ .|+. ..-+...|.+|.++|.+..|..-++.-+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l---------~P~d-------p~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF---------DPED-------PYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh---------CCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 45567788899999999999999999999998 2222 2334468999999999999999999887
Q ss_pred HHH
Q 006812 235 EIK 237 (630)
Q Consensus 235 ~~~ 237 (630)
+.+
T Consensus 243 ~~~ 245 (269)
T PRK10941 243 EQC 245 (269)
T ss_pred HhC
Confidence 655
No 387
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.82 E-value=52 Score=33.31 Aligned_cols=175 Identities=11% Similarity=-0.017 Sum_probs=102.2
Q ss_pred HhcCHHHHHHHHHHHHHHHhhh----cCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC---------
Q 006812 261 AVLNFKEALPFGLKALEIHKKG----LGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS--------- 327 (630)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--------- 327 (630)
....|++|...|.-+.....-. .-..+|.....+..++.++..+|+.+-|....++++-.+...-..
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3456778888888777655421 011356667788899999999999999999999988776552100
Q ss_pred ------hhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812 328 ------SEL---LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI 398 (630)
Q Consensus 328 ------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 398 (630)
+.. ..+++..-......|-+..|.++++-.+...+..+|.- +.+.+-....+..+|.=-+..++.....
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~--~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG--ILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh--HHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 111 12223334455678999999999999998877644421 1222222223344454444444443222
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Q 006812 399 LDKKETISPEEVADAYSEISMQYESMNE---FETAISLLKRTLALL 441 (630)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 441 (630)
..-..- |... .-..+|..|..... -..|...+.+|+.+.
T Consensus 408 n~l~~~---PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 408 NKLSQL---PNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred ccHhhc---CCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 111111 1111 12345666666555 567888888887763
No 388
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.62 E-value=37 Score=31.42 Aligned_cols=109 Identities=11% Similarity=0.113 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh---cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK---ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET 404 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 404 (630)
.........+|.+|...++|..|-..+.-.-...+. +.......+..+|.+|...++..+|..+..++--.....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence 345667778899999999998887776543221111 223346677889999999999999998888765443322
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTL 438 (630)
Q Consensus 405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 438 (630)
.++.-....-...|+++-..++|-+|...|-+..
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223333455677777778877776665543
No 389
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.10 E-value=14 Score=33.54 Aligned_cols=75 Identities=21% Similarity=0.176 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
.+...+..|...|.+.+|+++.++++. -+|-.-..+..+-.++...|+--.|...|++.-+.....+|-+-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 345567789999999999999999998 356666778888999999999999999999988888777775544
Q ss_pred HHH
Q 006812 534 DSI 536 (630)
Q Consensus 534 ~~~ 536 (630)
+..
T Consensus 353 dsi 355 (361)
T COG3947 353 DSI 355 (361)
T ss_pred hhH
Confidence 433
No 390
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.01 E-value=84 Score=35.07 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=10.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 006812 499 NLGAAYLELDRPQSAAQVFAFA 520 (630)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~a 520 (630)
.|+.-+..++++-+|.....+.
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHH
Confidence 3444444555555554444443
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.86 E-value=50 Score=32.36 Aligned_cols=139 Identities=14% Similarity=0.034 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHH--HHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARI--GWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
.....+.-.+..++|..|...+...... +.+... ...+..+ |..++..-++.+|.+.++..+......
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l----- 202 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL----- 202 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-----
Confidence 3344566677899999999999987763 222221 3344444 445567889999999999887632110
Q ss_pred ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
......+..+..+.. +...+.............-.+.....+..-|.--...|+|+.|...+-+++++.-+
T Consensus 203 ~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 NQEREGLKELVEVLK-------ALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HhHHHHHHHHHHHHH-------HHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 011112222222221 11112111111111000001222233333344445689999999999999887654
No 392
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=82.81 E-value=2.4 Score=23.14 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 538 ACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 538 ~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999988754
No 393
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.22 E-value=5.1 Score=37.43 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006812 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQ 560 (630)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 560 (630)
.-+...|.-.+.++++++|...|..|..+..+.+|..+.+...+++..|..+...++.+.+.-..-
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na 107 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA 107 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345678889999999999999999999999999999999999999999999999988877664443
No 394
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.51 E-value=83 Score=33.33 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=12.9
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 006812 214 ANVKTAMGRREEALEHLQK 232 (630)
Q Consensus 214 ~~~~~~~g~~~~A~~~~~~ 232 (630)
..++.-.|+|+.|+.++-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 4556677888888887665
No 395
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.47 E-value=16 Score=28.90 Aligned_cols=70 Identities=9% Similarity=-0.012 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812 291 AHDRRLLGVIYSGLEE---HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE 364 (630)
Q Consensus 291 ~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 364 (630)
..+.++++.+.....+ ..+.+..++..++ ...+...-...+.|+..+++.++|+.++.+.+..++.-+++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3456677777766544 4455555554333 12234455667778888899999999999998888765444
No 396
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.37 E-value=71 Score=32.45 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=98.1
Q ss_pred cccHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-------------
Q 006812 304 LEEHQKALEQNELSQKVLKT------WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE------------- 364 (630)
Q Consensus 304 ~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------------- 364 (630)
...|++|...|.-+.....- +...|..+..+..++.+...+|+.+-|..+..+++=.....
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45577888877777666433 23347788999999999999999999999999887544320
Q ss_pred ----ch---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 006812 365 ----SE---TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQY-ESMNEFETAISLLKR 436 (630)
Q Consensus 365 ----~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 436 (630)
.+ ....+++..-..+.+.|-+..|.++++-.+++.... ++ .+...+..+| .+..+|.=-++.++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e---DP----l~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE---DP----LGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC---Cc----hhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 01 112233333455667788888988888776654221 22 2222222222 334444444444443
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHHHcCC---hhhHHHHHHHHHHHH
Q 006812 437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGK---VPQAIPYLESAAERL 482 (630)
Q Consensus 437 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 482 (630)
.-.. .+. ...|....-..++..|..... -+.|...+.+|+.+.
T Consensus 404 ~e~~-n~l--~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 404 PENM-NKL--SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHhh-ccH--hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 3221 111 011222223566777776655 567888888888743
No 397
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.34 E-value=17 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhh
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDER 148 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 148 (630)
+.+..+...+..+-..| ++++|+.+|+++++.+.....
T Consensus 4 ~~A~~~a~~AVe~D~~g-r~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 4 EMARKYAINAVKAEKEG-NAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHH
Confidence 34566777787778887 999999999999998877643
No 398
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.42 E-value=3.5 Score=35.77 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=49.9
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 503 AYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 503 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
.....++.+.|.+.|.+++.+ -|+....|+.+|....+.|+++.|...|++.+++-.
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 445678999999999999994 477888999999999999999999999999987643
No 399
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.84 E-value=31 Score=27.43 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812 329 ELLRAEIDAANMQIALGK---FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI 398 (630)
Q Consensus 329 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 398 (630)
....+.++++.++....+ ..+.+.+++..++ ..++...-...+.|+..+.+.++|+.++.+.+..++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 345677788888876554 5667778887776 2334444557888999999999999999999887665
No 400
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.59 E-value=8.8 Score=35.95 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHH
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (630)
.-+...|+-.+.+++++.|...|..|..+....+|..+.....+++..|..++..++++...-
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345578999999999999999999999999999999999999999999999998888776543
No 401
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.36 E-value=19 Score=25.26 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=28.9
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhc
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEE 193 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 193 (630)
+..+...+.-+-..|++.+|+.+|+++++.+.++...
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~ 42 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKN 42 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566677778899999999999999987776543
No 402
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=77.97 E-value=16 Score=25.04 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 539 CQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 539 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
+...|.-....|++++|+.+|.++++.+..
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 444566667899999999999999998877
No 403
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.90 E-value=5.4 Score=22.31 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 538 ACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 538 ~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
+|..+-..|.+.|++++|.++|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466778888999999999998888653
No 404
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=77.73 E-value=5.3 Score=34.73 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=51.2
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 300 IYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 300 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
.....++.+.|.+.|.+++.+ .|.....|+.+|....+.|+++.|...|++.+++.+.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~l------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 345678888899999988886 6778888999999999999999999999999988766543
No 405
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=77.68 E-value=3.9 Score=22.25 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467888999999999999999998765
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.76 E-value=36 Score=27.01 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=53.1
Q ss_pred CChhhHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006812 466 GKVPQAIPYLESAAERLKES-FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK 544 (630)
Q Consensus 466 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 544 (630)
|.-..-..++++++..+... .=.+++....++...+. ....+.+.|..... +..|. ..+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~------~~~~~~~if~~l~~---~~IG~---~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD------LSSDPREIFKFLYS---KGIGT---KLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT------TBSHHHHHHHHHHH---HTTST---TBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH------HccCHHHHHHHHHH---cCccH---HHHHHHHHHHH
Confidence 44555567888888766432 00123444444433333 22378888887655 22333 33467888899
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 006812 545 AYSSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 545 ~~~~~g~~~~A~~~~~~al 563 (630)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999875
No 407
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.93 E-value=70 Score=30.02 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=19.6
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 296 LLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
+-|.++...++|.+....+.-+....+.
T Consensus 63 ~~Gl~a~~~~dya~S~~~ldAae~~~Kq 90 (449)
T COG3014 63 QNGLSALYARDYATSLGVLDAAEQRFKQ 90 (449)
T ss_pred hhhHHHHHhhhHHHhhhHHHHHHHHHhh
Confidence 4478888888888887777665554433
No 408
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=75.79 E-value=71 Score=30.01 Aligned_cols=93 Identities=15% Similarity=0.067 Sum_probs=63.6
Q ss_pred HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Q 006812 380 CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIG 459 (630)
Q Consensus 380 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 459 (630)
.+.++.++|.+++++..+.......+ ..+......+|.++...|+..++.+.+...-.......+-.......++.++
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 34558889999999888777655422 3456667788999999999999999999888877776543332233455555
Q ss_pred HH-HHHcCChhhHHHH
Q 006812 460 WL-LLLTGKVPQAIPY 474 (630)
Q Consensus 460 ~~-~~~~g~~~~A~~~ 474 (630)
.- |...|++......
T Consensus 164 sqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 164 SQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 54 4456777554433
No 409
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=74.49 E-value=1.3e+02 Score=32.28 Aligned_cols=146 Identities=14% Similarity=-0.022 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
..+..|..++...|++++-...-.++.+++ +..|.+..-|..--......++-.++...|++++.-+... ...
T Consensus 114 ~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v--~iw 186 (881)
T KOG0128|consen 114 AQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV--PIW 186 (881)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc--hHH
Confidence 445567778888888877555444444333 3334332222211112223367778888888887533211 011
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQ 360 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (630)
.+.+......+..+...++++.-...|.+++..+...-.. ......+...-..|...-..++-+.++...+..
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 1333333344455566788999999999988765433222 344556666666666666666677777666553
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=74.35 E-value=7.1 Score=35.54 Aligned_cols=60 Identities=8% Similarity=0.004 Sum_probs=48.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 499 NLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
+.+.-....|+.++|...|+.|+.+. |...+++..+|......++.-+|-.+|-+|+.+.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 33444567899999999999999853 4455788899999999999999999999998653
No 411
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=74.27 E-value=8.5 Score=35.06 Aligned_cols=60 Identities=18% Similarity=0.063 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
.+.+.-..+.|+.++|..+|+.|+.+ . |....++..+|......++.-+|-.+|-+|+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlal-----a---P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALAL-----A---PTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhc-----C---CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 33444456789999999999999983 3 555568889999999999999999999998875
No 412
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.18 E-value=25 Score=35.62 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812 215 NVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278 (630)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (630)
.+..+.|+++.|.+...++-. ..-|..||.+....|++..|.+++.++.+.
T Consensus 645 elal~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 444567777777766554321 234788999999999999999999987654
No 413
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=73.81 E-value=29 Score=24.56 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDE 147 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~ 147 (630)
.+..+...|...-..| ++++|+.+|.++++.+....
T Consensus 5 ~a~~l~~~Ave~D~~g-~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 5 AAKEVLKRAVELDQEG-RFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777 99999999999999887653
No 414
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=73.75 E-value=26 Score=24.03 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDE 147 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~ 147 (630)
+..+...|...-..| ++++|+.+|.+++..+....
T Consensus 5 A~~~~~~Av~~D~~g-~~~~A~~~Y~~ai~~l~~~~ 39 (69)
T PF04212_consen 5 AIELIKKAVEADEAG-NYEEALELYKEAIEYLMQAL 39 (69)
T ss_dssp HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHh
Confidence 455667777777787 99999999999999886653
No 415
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=73.29 E-value=7.8 Score=21.63 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
+|+.+-..|.+.|++++|.+.|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788899999999999999998765
No 416
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.00 E-value=76 Score=29.02 Aligned_cols=127 Identities=14% Similarity=0.206 Sum_probs=73.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhc------ch---HHHHHHHHHH-HHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 337 AANMQIALGKFEEAINTLKGVVRQTEKE------SE---TRALVFISMG-KALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~---~~~~~~~~la-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
-++...-..+|..|++.++++++....+ .. .....+..+| +++..++++.++..+.-+-.+.-++ -
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk----l 116 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK----L 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc----C
Confidence 3455556677888888888888766321 11 1111222333 6777889999888776554333222 2
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH-----HHHcCChhhHHHHHH
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL-----LLLTGKVPQAIPYLE 476 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-----~~~~g~~~~A~~~~~ 476 (630)
++.+... -..+|.+.+++....+.-..-+. .+.+....-|..++.+ +.=.|.+++|+++..
T Consensus 117 PpkIleL---CILLysKv~Ep~amlev~~~WL~------~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 PPKILEL---CILLYSKVQEPAAMLEVASAWLQ------DPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred CHHHHHH---HHHHHHHhcCHHHHHHHHHHHHh------CcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 2443333 34458888988887766555544 2222222234444444 445899999998773
No 417
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=72.67 E-value=31 Score=24.49 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKD 146 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~ 146 (630)
..+..+...|..+-..| +.++|+.+|++++....+.
T Consensus 6 ~~A~~~I~kaL~~dE~g-~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 6 KQAFEEISKALRADEWG-DKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777 9999999999999988775
No 418
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=72.47 E-value=1.4e+02 Score=31.94 Aligned_cols=124 Identities=9% Similarity=-0.036 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812 427 FETAISLLKRTLALLEKLPQA-QHSEGSVSARIGWLLLL-TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY 504 (630)
Q Consensus 427 ~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 504 (630)
++.-.+.|+.|...+....+. ..+...++...|.++.. +++.+.|..+....+. ......+..|.....+-
T Consensus 435 ~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt-------y~~~~iag~Wle~~~lE 507 (881)
T KOG0128|consen 435 YSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT-------YGGGSIAGKWLEAINLE 507 (881)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc-------CCcchHHHHHHHHHhHH
Confidence 334444555555555544443 23334556667776655 5677888877766554 22233343566666666
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812 505 LELDRPQSAAQVFAFAKDIMDVSLGPHHAD-SIEACQNLSKAYSSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 505 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 563 (630)
...|+...|..++++|+.- ...|+ ...++..+-..-...|.++.....-.+.+
T Consensus 508 ~~~g~~~~~R~~~R~ay~~------~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~ 561 (881)
T KOG0128|consen 508 REYGDGPSARKVLRKAYSQ------VVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVL 561 (881)
T ss_pred HHhCCchhHHHHHHHHHhc------CcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhc
Confidence 7779999999988888762 23343 44566666666777777777766555443
No 419
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.38 E-value=1e+02 Score=30.16 Aligned_cols=68 Identities=10% Similarity=-0.003 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVR 359 (630)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (630)
.+++.+-.+...-|+++.|...+.+++.-++.+|.+|.....+.-+-......+...-|..+......
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 45777788888999999999999999999999999988766555554433344444556666666554
No 420
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=72.16 E-value=12 Score=20.88 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 538 ACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 538 ~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
+|..+..++.+.|+++.|..+++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577788889999999999888887654
No 421
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=72.13 E-value=1e+02 Score=30.26 Aligned_cols=244 Identities=13% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHH
Q 006812 135 FANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELA 214 (630)
Q Consensus 135 ~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (630)
.+++++... +..+..|+.........++-++|+...++++.. .|. ....++
T Consensus 290 ~~~q~~~y~----------~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~----------------sps---L~~~ls 340 (660)
T COG5107 290 IHNQILDYF----------YYAEEVWFDYSEYLIGISDKQKALKTVERGIEM----------------SPS---LTMFLS 340 (660)
T ss_pred HHHHHHHHh----------hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC----------------CCc---hheeHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 006812 215 NVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDR 294 (630)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 294 (630)
.+|....+-+.--.+|+++.+.............+..- -|+++...+++-+-..... .++
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~---------D~N~e~~~Ell~kr~~k~t-----------~v~ 400 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKV---------DNNFEYSKELLLKRINKLT-----------FVF 400 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccc---------cCCccccHHHHHHHHhhhh-----------hHH
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812 295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANM-QIALGKFEEAINTLKGVVRQTEKESETRALVFI 373 (630)
Q Consensus 295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 373 (630)
...-+.-.+..-.+.|...|.++.+. ......++..-|.+ |...|++.-|...|+-.+..++..+. ...
T Consensus 401 C~~~N~v~r~~Gl~aaR~~F~k~rk~------~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~----y~~ 470 (660)
T COG5107 401 CVHLNYVLRKRGLEAARKLFIKLRKE------GIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTL----YKE 470 (660)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcc------CCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchH----HHH
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
..-..+...++-..|...|+.++...... .....|..+...-..-|+...+..+-++.....++
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKT------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHh------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
No 422
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=72.11 E-value=1.7e+02 Score=32.83 Aligned_cols=25 Identities=16% Similarity=-0.068 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
..|+.-+..++++-+|-+.....+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 6677777788888888877776654
No 423
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=71.54 E-value=91 Score=29.35 Aligned_cols=95 Identities=14% Similarity=0.308 Sum_probs=65.9
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcch--HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-
Q 006812 342 IALGKFEEAINTLKGVVRQTEKESE--TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEIS- 418 (630)
Q Consensus 342 ~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la- 418 (630)
.+.++.++|++++++..+....... ........++.++...|+..++.+.+....+......+..+ .+-..++.++
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~-~Vh~~fY~lss 164 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS-NVHSSFYSLSS 164 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh-hhhhhHHHHHH
Confidence 3456888999999988876655433 55666778889999999999999999998888876665443 3444455554
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 006812 419 MQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~al~~ 440 (630)
..|...|++... |..++..
T Consensus 165 qYyk~~~d~a~y---Yr~~L~Y 183 (380)
T KOG2908|consen 165 QYYKKIGDFASY---YRHALLY 183 (380)
T ss_pred HHHHHHHhHHHH---HHHHHHH
Confidence 455566777654 4444443
No 424
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=71.46 E-value=1e+02 Score=29.94 Aligned_cols=61 Identities=13% Similarity=0.003 Sum_probs=38.1
Q ss_pred hHHHHHHHhhHHHhhcc---------ChHHHHHHHHHHHHHHhHhhhcCCCCCC-ccchhhHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFK---------RFSDSLGYLSKANRMLGRLEEEGLGGSV-EDIKPIMHAVHLELAN 215 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 215 (630)
+.+.+++++|.+|...| ..++|..+|+.|--.+.-+.+..++... +|..+....++..+..
T Consensus 112 Eka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~Dl~~~~l~~L~~lmL 182 (361)
T cd09239 112 EEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGAVDMSSQLLSFNYSLML 182 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHHHHHH
Confidence 45667777777776544 2667888999988777766654423222 3666666555554433
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.46 E-value=49 Score=26.21 Aligned_cols=86 Identities=9% Similarity=-0.058 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH
Q 006812 383 EKFADAKRCLEIACGILDKK-ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL 461 (630)
Q Consensus 383 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 461 (630)
+.-..-...+++++..+... .-.+.+.....|...+.... .+.+.|...... ..| ...+..|...|..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~---~IG--~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK---GIG--TKLALFYEEWAEF 108 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH---TTS--TTBHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc---Ccc--HHHHHHHHHHHHH
Confidence 34444456777777777542 22344566666666655322 677777655442 223 2335677889999
Q ss_pred HHHcCChhhHHHHHHHHH
Q 006812 462 LLLTGKVPQAIPYLESAA 479 (630)
Q Consensus 462 ~~~~g~~~~A~~~~~~al 479 (630)
+...|++++|.++|+.++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999998764
No 426
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=71.46 E-value=1.1e+02 Score=31.24 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812 265 FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG 325 (630)
Q Consensus 265 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 325 (630)
-..++.+|.+|+...+..++..| ..-|..+|..+++.+++.+|+.....|-.+++..+
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYN 352 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB
T ss_pred CCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45678888888888887765433 24466778889999999999988887777655543
No 427
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=71.45 E-value=62 Score=29.97 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH
Q 006812 388 AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL 464 (630)
Q Consensus 388 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 464 (630)
|+.+|.+|..+. |..+..|+.+|.++...|+.-.|+-+|-+++.. ..|...+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHH
Confidence 678899999988 667799999999999999999999999998852 33445567778777776
No 428
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.86 E-value=18 Score=20.99 Aligned_cols=24 Identities=33% Similarity=0.402 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQ 560 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~ 560 (630)
+.+..+|-.+...|++++|+.+|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456788999999999999999955
No 429
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.04 E-value=2e+02 Score=32.31 Aligned_cols=196 Identities=14% Similarity=0.036 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh------cccc----HHHHHHHHHHHHH
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYS------GLEE----HQKALEQNELSQK 319 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~a~~ 319 (630)
..-..+|.+|...|...+|+.+|.+|..-..+ . .++..+..... ..|+ -..|+.||.++++
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge----~-----~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~r 991 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGE----G-----NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVR 991 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhcccc----H-----HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHH
Confidence 34456788899999999999999998763221 1 12222211100 2222 2235667777666
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812 320 VLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGIL 399 (630)
Q Consensus 320 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 399 (630)
+++. .+..+.+.++...|++..+.+.+..+..+..+-.-+...|.+-+|...+-+--
T Consensus 992 lle~--------------------hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np--- 1048 (1480)
T KOG4521|consen 992 LLEE--------------------HNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP--- 1048 (1480)
T ss_pred HHHH--------------------hccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---
Confidence 6554 44557778888888888888888888888888888888888888876544311
Q ss_pred HhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHH-HHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHH
Q 006812 400 DKKETISPEEVADAYSEISMQYESMNEFETAIS-----LLKRTLA-LLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAI 472 (630)
Q Consensus 400 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~-~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~ 472 (630)
+......++..+-.+++..|+++.-.+ +-++... +.+......... ...|..|-..+...++|.+|-
T Consensus 1049 ------dserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaa 1122 (1480)
T KOG4521|consen 1049 ------DSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAA 1122 (1480)
T ss_pred ------cHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHH
Confidence 112334566677777777777643221 0111111 111110111111 234455555667788888765
Q ss_pred -HHHHHHHHHHH
Q 006812 473 -PYLESAAERLK 483 (630)
Q Consensus 473 -~~~~~al~~~~ 483 (630)
-+|+.+..+..
T Consensus 1123 tvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1123 TVMYEYAMRLES 1134 (1480)
T ss_pred HHHHHHHHHhcc
Confidence 46777766543
No 430
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=68.55 E-value=21 Score=20.75 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=8.3
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 006812 336 DAANMQIALGKFEEAINT 353 (630)
Q Consensus 336 ~la~~~~~~g~~~~A~~~ 353 (630)
.+|-.+..+|++++|+..
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344444455555555554
No 431
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.30 E-value=39 Score=23.82 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 006812 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDV 526 (630)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 526 (630)
+...|.-+-..|+|++|+.+|..+++.+..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344555566789999999999999998765
No 432
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.21 E-value=39 Score=23.81 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDK 145 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~ 145 (630)
+.+..+...+...-..| +|++|+.+|..+++.+..
T Consensus 4 ~~Ai~~a~~Ave~D~~g-~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEG-RYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHH
Confidence 34556667777777777 999999999999998866
No 433
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=67.29 E-value=50 Score=29.35 Aligned_cols=110 Identities=11% Similarity=0.072 Sum_probs=65.8
Q ss_pred HhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchH
Q 006812 167 NYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR 246 (630)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 246 (630)
.+..|+|+.|++...-|+..-..+.+.- ..+....++.-....+......|+.-+. .+......+. ....-.+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f----~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~ 166 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQF----RRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDE 166 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccc----cCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChH
Confidence 4578999999999999998733332211 1122333444444556666666663222 1222222222 22222334
Q ss_pred HHHHHHHHHHHHHH---------HhcCHHHHHHHHHHHHHHHhhh
Q 006812 247 ELGVANRDLAEAFV---------AVLNFKEALPFGLKALEIHKKG 282 (630)
Q Consensus 247 ~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~ 282 (630)
..+..+...|..+. ..++...|+.++++|+.+.++.
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 45677777888773 5568889999999999987654
No 434
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=66.92 E-value=15 Score=20.33 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
+|..+..++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888999999999999999998765
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.89 E-value=1.4e+02 Score=29.32 Aligned_cols=63 Identities=11% Similarity=-0.098 Sum_probs=42.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHH
Q 006812 294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA--ANMQIALGKFEEAINTLKGVVRQ 360 (630)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~ 360 (630)
....+.-.++.++|..|...+...... +..... ...+..+ |..++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566677889999999998876553 222222 3344444 45556788899999999987764
No 436
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.82 E-value=1.2e+02 Score=28.43 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
+.+-...++.. +..+-|+....|+++.++ .+.+|..++.- ..--..+|...+++|++..
T Consensus 188 ~eIMQ~AWRER-np~~RI~~A~~ALeIN~e----------CA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 188 DEIMQKAWRER-NPPARIKAAYQALEINNE----------CATAYVLLAEE--EATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHhcCch----------hhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH
Confidence 33444455555 788888888888887643 45566555432 2334667888888888763
No 437
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.33 E-value=1.9e+02 Score=30.69 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESA 478 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~a 478 (630)
+....|.-....|++++|+.+|.-+
T Consensus 416 i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 416 IIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3345556666677777777666544
No 438
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=64.58 E-value=2.8e+02 Score=32.38 Aligned_cols=236 Identities=15% Similarity=0.040 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhc---c---------------
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSF---K--------------- 171 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g--------------- 171 (630)
..+...-.+|..+...| .+.+|+..|.+|+...... +|. .-.+.++-.++.+..-. |
T Consensus 240 ~~gR~~k~~gd~~LlaG-~~~dAl~~y~~a~~~~k~~--~D~--lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~ 314 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAG-RWPDALKEYTEAIEILKSS--NDY--LWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPI 314 (1185)
T ss_pred hhhhhhhhhhhHHHHcC-CHHHHHHHHHHHHHHHhhc--CcH--hhhHHHHHHHHHHHHHHhccCCCccccchhcccCCC
Confidence 35566777888888888 9999999999999998775 442 22333333333221100 0
Q ss_pred -------------------------------------C-hHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHH
Q 006812 172 -------------------------------------R-FSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLEL 213 (630)
Q Consensus 172 -------------------------------------~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (630)
. ...-...+++++.++.+..... ....| .....++....
T Consensus 315 ~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~-~~~~p--~lv~~E~~lr~ 391 (1185)
T PF08626_consen 315 SSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDT-SEYVP--QLVYSEACLRF 391 (1185)
T ss_pred CCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccc-cccCc--chHHHHHHHHH
Confidence 0 1122234555555555443211 11111 11344666777
Q ss_pred HHHHHHcC--------------------CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006812 214 ANVKTAMG--------------------RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGL 273 (630)
Q Consensus 214 ~~~~~~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (630)
+..+.... .-.++..+..+++.+.... -+..+....+..+|.+|...|-..++.-+.+
T Consensus 392 ~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR 469 (1185)
T PF08626_consen 392 ARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLR 469 (1185)
T ss_pred HHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 77777777 6777888888888765433 2345667899999999999999988888888
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHcCCHHHHHH
Q 006812 274 KALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG-LSSELLRAEIDAANMQIALGKFEEAIN 352 (630)
Q Consensus 274 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~ 352 (630)
.++...-......+......+..+...|.-..+.+.-...-. ....+ -..-...++..+-.+....+++..+..
T Consensus 470 ~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~-----~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~ 544 (1185)
T PF08626_consen 470 ELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSS-----KGSQSNWPSLQIDVLKECINIAEALGDFAGVLR 544 (1185)
T ss_pred HHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccc-----cccccCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 777665321111122222233333333332111111000000 00000 001123344455556667888888877
Q ss_pred HHHHHHHH
Q 006812 353 TLKGVVRQ 360 (630)
Q Consensus 353 ~~~~~l~~ 360 (630)
+.-..+..
T Consensus 545 ~~~~LL~~ 552 (1185)
T PF08626_consen 545 FSSLLLRT 552 (1185)
T ss_pred HHHHHHHH
Confidence 77666654
No 439
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=64.31 E-value=93 Score=28.77 Aligned_cols=62 Identities=8% Similarity=-0.149 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh
Q 006812 310 ALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN 381 (630)
Q Consensus 310 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 381 (630)
|..+|.+|..+ .|.....++.+|.++...|+.-.|+-+|-+++-..... ..+..++..++.+
T Consensus 1 A~~~Y~~A~~l------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf----~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF----PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHH
Confidence 67889999888 67788899999999999999999999998888532221 3355666655555
No 440
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.07 E-value=27 Score=35.45 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.-|..||.+....|++..|.+++.++.+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3466899999999999999999998753
No 441
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=61.97 E-value=54 Score=23.20 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 497 YNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 497 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
+...|.-.-..|++++|+.+|.++++.+...+
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33445556678999999999999999876644
No 442
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.93 E-value=21 Score=25.07 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDK 145 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~ 145 (630)
+..+...|..--..| +|++|+.+|..+++.+..
T Consensus 6 ai~Lv~~A~~eD~~g-ny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 6 AHFLVTQAFDEDEKG-NAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHhhHhh-hHHHHHHHHHHHHHHHHH
Confidence 344455555555556 999999999999998855
No 443
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.18 E-value=65 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 536 IEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
+..+..+|.+|.+.|+..+|-+++.+|.+
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 36889999999999999999999999985
No 444
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.28 E-value=82 Score=33.13 Aligned_cols=177 Identities=9% Similarity=0.032 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhCC
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE---SMNEFETAISLLKRTLALLEKLP 445 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~ 445 (630)
+.+..++-..|....+|+.-++..+....+-....-.+. ..+.+..+-++. +-|+-++|+...-.+++. .
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~---~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~---e- 273 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVET---HNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK---E- 273 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhcc---CceEEEeeehhcccCCCccHHHHHHHHHHHHHh---c-
Confidence 556667777788888888777776654433211000000 011111222222 346777887776666553 2
Q ss_pred CCCCchhHHHHHHHHHHH---------HcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-hhHHHH
Q 006812 446 QAQHSEGSVSARIGWLLL---------LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDR-PQSAAQ 515 (630)
Q Consensus 446 ~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~ 515 (630)
++..| ..+...|.+|. ..+..+.|+++|+++.+.. |.. .+=.+++.++...|. |+...+
T Consensus 274 g~vap--Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve--------P~~-~sGIN~atLL~aaG~~Fens~E 342 (1226)
T KOG4279|consen 274 GPVAP--DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE--------PLE-YSGINLATLLRAAGEHFENSLE 342 (1226)
T ss_pred CCCCC--ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC--------chh-hccccHHHHHHHhhhhccchHH
Confidence 22223 24444555553 3455678889999998742 211 112355555555554 343443
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHH
Q 006812 516 VFAFAKDIMDVSLGPHHADSIEACQNLSKAY---SSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 516 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al 563 (630)
+-.-.+.+..-+......+....|...|..+ ...+++.+|++.-+...
T Consensus 343 lq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 343 LQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHh
Confidence 3333333221111112233333444444333 23456666665554443
No 445
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=59.14 E-value=42 Score=33.51 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=56.3
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006812 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSA---AQVFAFAKDIMDVSLGPHHADSIEACQNLS 543 (630)
Q Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~al~~~~~~~~~~~~~~~~~~~~la 543 (630)
....|+..|.+++. ..|.....+.+.+.++.+.+=...+ +.-...|+. -+|....+++.|+
T Consensus 389 ~~~~~i~~~s~a~q--------~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr--------ln~s~~kah~~la 452 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQ--------YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALR--------LNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHHHHHHHhh--------hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc--------CChHHHHHHHHHH
Confidence 34566667776665 3455566777777777765433333 333334443 4577778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 544 KAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
.++..++++.+|++....+...++
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCc
Confidence 999999999999988776654433
No 446
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=58.85 E-value=61 Score=22.79 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDE 147 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~ 147 (630)
+..+...|...-..| ++++|+.+|.++++.+....
T Consensus 8 A~~li~~Av~~d~~g-~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 8 AKELISKALKADEAG-DYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHh
Confidence 344555666666677 99999999999999887753
No 447
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.29 E-value=1.5e+02 Score=27.19 Aligned_cols=63 Identities=14% Similarity=-0.005 Sum_probs=35.1
Q ss_pred HHHHHHHHcCChhHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812 499 NLGAAYLELDRPQSAAQ-VFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 499 ~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 562 (630)
+++.+....+.-+.... +.+++++...+ ++.........+..+|..+..-+++.+|..+|-.+
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~-~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKE-FGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 44445444444444333 34445544333 22211222257778888888888888888887543
No 448
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=57.83 E-value=81 Score=31.65 Aligned_cols=84 Identities=18% Similarity=0.032 Sum_probs=54.7
Q ss_pred ccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhccchH
Q 006812 170 FKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR---REEALEHLQKCLEIKELILEEDSR 246 (630)
Q Consensus 170 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~ 246 (630)
.+....|+..|.+++.. .+.....+.+.+.++.+.+- .-.|+.-...++ .-+|
T Consensus 387 ~~~~~~~i~~~s~a~q~----------------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al--------rln~ 442 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQY----------------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL--------RLNP 442 (758)
T ss_pred hHHHHHHHHHHHHHhhh----------------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc--------cCCh
Confidence 34456677777777665 22334555566666666543 334444444444 3446
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006812 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALE 277 (630)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (630)
....+++.|+.++...+++.+|+.+...+..
T Consensus 443 s~~kah~~la~aL~el~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELTRYLEALSCHWALQM 473 (758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 6678999999999999999999988765443
No 449
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.72 E-value=2.7e+02 Score=30.76 Aligned_cols=186 Identities=16% Similarity=0.016 Sum_probs=87.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhhhcc-----
Q 006812 293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKF--EEAINTLKGVVRQTEKES----- 365 (630)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~~~~----- 365 (630)
-+..|+.+|...|.+++|++.+.+...-.. ..+......+-.+-......+.. +-..++-.-.++..+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~--~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS--DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc--ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeee
Confidence 367889999999999999998876554221 01111222222222223333332 333343333333222110
Q ss_pred ---hHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-HHHHcCCHHHHHHH--HHHHH
Q 006812 366 ---ETRALVF-ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISM-QYESMNEFETAISL--LKRTL 438 (630)
Q Consensus 366 ---~~~~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~--~~~al 438 (630)
...+... -....-|......+-++.|++..+...+.....-+...+..|..... .-...++-+++.+. .++..
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~ 663 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLL 663 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHH
Confidence 0000000 01112244556677778888888776654322222222222222211 11112233345554 33333
Q ss_pred HHHHhCCC--CC-----CchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 439 ALLEKLPQ--AQ-----HSEGSVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 439 ~~~~~~~~--~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
...+.... +. .+....+...+.++.+.|+.++|+..|-..+.
T Consensus 664 ~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 664 DFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33222111 00 11123556778888899999999998876664
No 450
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=57.15 E-value=2e+02 Score=28.23 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=37.0
Q ss_pred hHHHHHHHhhHHHhhc---------cChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSF---------KRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELA 214 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (630)
+.+.+++++|.++... ....+|..+|++|--++.-+.+...+...+|..+....++..+.
T Consensus 105 E~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~ 173 (377)
T PF03097_consen 105 EKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLM 173 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHH
Confidence 4455566666655543 33668889999998888777666434444566666655555443
No 451
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=56.81 E-value=2.4e+02 Score=29.04 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhh
Q 006812 284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG-VVRQTE 362 (630)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~~ 362 (630)
++.++....... +...+...+....+.-.+..++.. ++....+..+++......|....+...+.+ +....+
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~ 133 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSP 133 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence 445666555554 677777788877776666655554 677788888888887777776666655555 444444
Q ss_pred hcchHH--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812 363 KESETR--ALVFISMGKALCNQEKFADAKRCLEIACGILD 400 (630)
Q Consensus 363 ~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 400 (630)
.+.... ...++.++......|+..++...++++..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 134 DNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred chHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 433221 22233478888888999999888888887763
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=56.73 E-value=2e+02 Score=28.08 Aligned_cols=60 Identities=13% Similarity=-0.048 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHHcCChhHHHHHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA--YLELDRPQSAAQVFA 518 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 518 (630)
...+..+++.++|..|...|.++.... +.+........+..++.+ ++..-++++|.++++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345667888999999999999988631 111222333444455444 467889999999998
No 453
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.69 E-value=2.7e+02 Score=30.65 Aligned_cols=27 Identities=7% Similarity=-0.106 Sum_probs=23.0
Q ss_pred HHHHhhHHHhhccChHHHHHHHHHHHH
Q 006812 159 CLQVMGSANYSFKRFSDSLGYLSKANR 185 (630)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (630)
-|..|+..|...|++++|++.+.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 456789999999999999999987765
No 454
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.24 E-value=36 Score=33.42 Aligned_cols=94 Identities=9% Similarity=-0.040 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHH
Q 006812 415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG 494 (630)
Q Consensus 415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 494 (630)
...+.+....|+|+.|...+..+-.+... . ..+...+-......|++++|....+-.+. +..+..
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s----~---~~~~~~~~r~~~~l~r~~~a~s~a~~~l~--------~eie~~ 391 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKIIGT----T---DSTLRCRLRSLHGLARWREALSTAEMMLS--------NEIEDE 391 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhhhcC----C---chHHHHHHHhhhchhhHHHHHHHHHHHhc--------cccCCh
Confidence 44577788888888888776655433211 1 12344455566777888888776655443 111222
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
++...-+.....+|-+++|..++++.+.+
T Consensus 392 ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 392 EVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 22222233334455566666666666554
No 455
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.23 E-value=1.5e+02 Score=26.49 Aligned_cols=111 Identities=13% Similarity=-0.018 Sum_probs=64.2
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHhcCC---CCc-cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 460 WLLLLTGKVPQAIPYLESAAERLKESFGP---KHF-GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
.-.+..|+++.|+++..-+++.-..+-+. +.| -+++....-+......|+.-+.. ++.....+... ..-.+.-.
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~-~~~~~~~l~~~-~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY-FLRVFLDLTTE-WDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHhc-CCCChHHH
Confidence 34567899999999999999843222100 011 12223334444555566533321 23333333221 11222333
Q ss_pred HHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 536 IEACQNLSKAY---------SSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 536 ~~~~~~la~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
+..+..+|..+ ...++...|..++++|+++..+.|..
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK 214 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVK 214 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChH
Confidence 46667777777 35568899999999999998777764
No 456
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=55.79 E-value=2.5e+02 Score=28.93 Aligned_cols=96 Identities=18% Similarity=-0.015 Sum_probs=65.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHH-HHHHHHHhcCCCCHHHH
Q 006812 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF-AKDIMDVSLGPHHADSI 536 (630)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~ 536 (630)
+...+...+....+.-....++. .++..+.+..+|+......|....+...+.. +... .|...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~--------~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLS--------VNPENCPAVQNLAAALELDGLQFLALADISEIAEWL--------SPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHh--------cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--------CcchH
Confidence 66666777777777777777666 3566677888888888887777776665554 3332 12222
Q ss_pred HHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 537 EAC------QNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 537 ~~~------~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
... +.++.....+|+..++....+++.++....
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 222 236888888899999888888888765553
No 457
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=55.04 E-value=1.2e+02 Score=25.10 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 370 LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
......+.-....|+...|.+.++.+-.-..-....-|......-...+..+...|++.+|...+..+++
T Consensus 76 ~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 76 KAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3455667778888999998887775422110000001123334456677888999999999999988875
No 458
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.00 E-value=41 Score=32.30 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---cCC-----CchhHHHHHHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWES---HGP-----SAQDELREARRLLEQLKIK 590 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~-----~~~~~~~~A~~~~~~~~~~ 590 (630)
-+..++|.+|...+++++|+.+|++++..... .|. .....|+.|..+.+++++.
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes 84 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKES 84 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHH
Confidence 34567899999999999999999999998877 122 1345688888888876554
No 459
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.12 E-value=71 Score=31.52 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=9.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 006812 336 DAANMQIALGKFEEAINTLKG 356 (630)
Q Consensus 336 ~la~~~~~~g~~~~A~~~~~~ 356 (630)
..+.+...+|+|+.+...+..
T Consensus 328 l~~~i~~~lg~ye~~~~~~s~ 348 (831)
T PRK15180 328 LRSVIFSHLGYYEQAYQDISD 348 (831)
T ss_pred HHHHHHHHhhhHHHHHHHhhc
Confidence 334444445555544444433
No 460
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=53.93 E-value=38 Score=18.99 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSM----GSYTLAIEFQQRAID 564 (630)
Q Consensus 537 ~~~~~la~~~~~~----g~~~~A~~~~~~al~ 564 (630)
.+++.||.+|..- .+..+|..+|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3567778777543 388889998888864
No 461
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=52.48 E-value=1.3e+02 Score=24.83 Aligned_cols=103 Identities=9% Similarity=-0.106 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
..+...-...|.|.+|.+++.+.++.. +..+...+|..++.|.....+-.--+.--++..+...-...+..|-.
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFW 170 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFW 170 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchH
Confidence 334445566789999999999998842 45667778888888887765544333333333333333344566666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 536 IEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 536 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
+.+-..-+..-.+.|...+|.++++..+.
T Consensus 171 atAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 171 ATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 65555556666788999999999888774
No 462
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.45 E-value=2e+02 Score=26.50 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=80.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc-----HHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812 373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISP-----EEVADAYSEI-SMQYESMNEFETAISLLKRTLALLEKLPQ 446 (630)
Q Consensus 373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 446 (630)
-.-+..+.-..||..|...++++++.......... .+....+..+ .+++..+++|.+++.+.-+-.+.-+++
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl-- 116 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL-- 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC--
Confidence 34455566677899999999999988743221111 1222233333 346788999999988876655532222
Q ss_pred CCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-----HHHcCChhHHHHHHH
Q 006812 447 AQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA-----YLELDRPQSAAQVFA 518 (630)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~ 518 (630)
-..++..-..+|.+.|++....+.-..-+.. +++.... -|..+++. +.=+|.+++|.++..
T Consensus 117 ----PpkIleLCILLysKv~Ep~amlev~~~WL~~------p~Nq~lp-~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 ----PPKILELCILLYSKVQEPAAMLEVASAWLQD------PSNQSLP-EYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC------cccCCch-hhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 2345555566788899988887766655541 2222222 24444444 455799999987763
No 463
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=50.82 E-value=1.1e+02 Score=24.38 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=35.0
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 461 LLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
++..+|+-++-.+.+..... +....+..+..+|.+|.+.|+..+|-+.+.+|-+
T Consensus 95 ~lv~~~kkDqLdki~~~l~k--------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKK--------NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHhh--------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34456665555555554432 2233456788999999999999999999999977
No 464
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=49.34 E-value=90 Score=21.89 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=23.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 499 NLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
..|.-.-..|++++|+.+|..+++.+....
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344455678999999999999999876654
No 465
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=46.93 E-value=99 Score=21.69 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 541 NLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 541 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
..|.-+...|++++|+.+|.++++.+..
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3455566789999999999999998887
No 466
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=46.91 E-value=36 Score=32.05 Aligned_cols=111 Identities=22% Similarity=0.258 Sum_probs=78.6
Q ss_pred HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCcc----chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVED----IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
-..|.-.++.++++.|..-|.+++.......... ....++ ..........+++.+-...+.+..|+..-..++.
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~-~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~- 303 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQSRDR-EKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR- 303 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhccccccc-ccccccccccccccccccccchHHhcccccCCCcceeccccccc-
Confidence 4467778899999999999999988766422111 111111 2223334556678888888888888877666553
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
..+....+++..+..+....++++|++.++.+....+
T Consensus 304 -------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 304 -------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred -------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence 3455577899999999999999999999998876543
No 467
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.17 E-value=2.8e+02 Score=26.36 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 538 ACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 538 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
+-+.-+..+.-.|++.++..++.+++-+.+
T Consensus 215 v~Yl~~lf~a~n~dv~kg~~~~~e~~gi~q 244 (449)
T COG3014 215 VSYLSGLFYALNGDVNKGLGYLNEAYGISQ 244 (449)
T ss_pred HHHHHHHhcccCccHhHHHHHHHHHhccCc
Confidence 334445566667778888877777765543
No 468
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=44.11 E-value=1.1e+02 Score=21.43 Aligned_cols=29 Identities=31% Similarity=0.196 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 006812 212 ELANVKTAMGRREEALEHLQKCLEIKELI 240 (630)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 240 (630)
..|.-.-..|++++|+.+|.++++.+...
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44555567899999999999999887664
No 469
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.96 E-value=3.6e+02 Score=27.35 Aligned_cols=301 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhhcCCCCH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh-----
Q 006812 259 FVAVLNFKEALPFGLKALEIHKKGLGHNSV----EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE----- 329 (630)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----- 329 (630)
+....+..+|..+..+..++.......+++ ..+.+-+.-|.+.+...+++.|.+.+..+.-++..++...+
T Consensus 116 fhll~rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m~G~lnfE~r~Wk~a~ea~~~~klvye~L~~a~~~e~~~ 195 (593)
T KOG2460|consen 116 FHLLNRLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYMEGMLNFERRKWKDAAEAFNNAKLVYEKLAHAKNLELEE 195 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHhhhhhhHHhHHhHHHHHHHHHHHHHHHHhhcCchhHH
Q ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhc
Q 006812 330 ------LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKE 403 (630)
Q Consensus 330 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 403 (630)
.-....+|-.+.+..+ -.++-....+.+....+.+.........+...-. . .-...-..--..++......
T Consensus 196 ~v~~~~vneiqpnLRycA~Ni~-~~~~~~~i~Elmq~r~~~dee~~~~~~svd~lis-~-~t~tes~~~~t~IeWRg~kv 272 (593)
T KOG2460|consen 196 SVYDNRVNEIQPNLRYCAYNII-GPESNGFIDELMQSREQKDEELVKLLESVDFLIS-I-QTSTESSATTTTIEWRGRKV 272 (593)
T ss_pred HHHHHHHHhcChhHHHHhhhcc-CccccchHHHHHHhhccCCchhhhhhhccchhhh-c-chhhhhhcceeEEEecCccc
Q ss_pred CCCcHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHH----------------HhCCCCCCchhHHHHHHHHHHHH
Q 006812 404 TISPEEVADAYSEISMQY---ESMNEFETAISLLKRTLALL----------------EKLPQAQHSEGSVSARIGWLLLL 464 (630)
Q Consensus 404 ~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~la~~~~~ 464 (630)
...++.+...+.....+. ...+.++.=+..+++++.-+ .+..........+|...-.+...
T Consensus 273 kV~~~kV~~fL~~~~d~~~~l~q~~t~~~K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~i~aYL~Y~~l~~t 352 (593)
T KOG2460|consen 273 KVIDEKVRQFLLQGLDIEPALAQITTYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQIILAYLKYNKLLTT 352 (593)
T ss_pred ccccHHHHHHHHHHHhhcHHhccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchHHHHHHHHHHHHHH
Q ss_pred cCChhhHHHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHcCChhHHH--HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006812 465 TGKVPQAIPYLESAAERLKESFGPK--HFGVGYIYNNLGAAYLELDRPQSAA--QVFAFAKDIMDVSLGPHHADSIEACQ 540 (630)
Q Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~al~~~~~~~~~~~~~~~~~~~ 540 (630)
..+.+.|...+....--.....+.. ..+....|-.+-..+...-....+. .-+...++.... .-.+--++
T Consensus 353 isR~~~~~~n~~~~~ls~~~~~~~k~rpqdl~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~------~fkafRC~ 426 (593)
T KOG2460|consen 353 ISRNEDAFTNLWNQWLSQQTSDPKKLRPQDLERLYDSIIKNLSEIMELPGLESDKELQSQLELKKL------YFKAFRCF 426 (593)
T ss_pred HhHHHHHHhhhHHHHHHhCcccccccCHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHH------HHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 541 NLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 541 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
.+|..|...++|.+|..+|.+|......
T Consensus 427 ~iA~sY~a~~K~~EAlALy~Ra~sylqe 454 (593)
T KOG2460|consen 427 YIAVSYQAKKKYSEALALYVRAYSYLQE 454 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=43.62 E-value=62 Score=30.63 Aligned_cols=99 Identities=15% Similarity=0.054 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC------C------CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812 416 EISMQYESMNEFETAISLLKRTLALLEKLPQA------Q------HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK 483 (630)
Q Consensus 416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 483 (630)
..+.-..+.++++.|..-|.+++......... + .....+..+++.+-.+.+.+..|+..-..+++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--- 303 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR--- 303 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc---
Confidence 34555677888888888888887765421110 0 00123446788888888999888877666665
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
..+.....++..+..+....++++|++.++.+..
T Consensus 304 -----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 304 -----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred -----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 3455666889999999999999999999999876
No 471
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=43.30 E-value=63 Score=18.55 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=15.4
Q ss_pred HHHHHHH--HHHHhcC-----CHHHHHHHHHHHHH
Q 006812 537 EACQNLS--KAYSSMG-----SYTLAIEFQQRAID 564 (630)
Q Consensus 537 ~~~~~la--~~~~~~g-----~~~~A~~~~~~al~ 564 (630)
.+.+.|| .+|..-. ++++|..+|+++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 3555666 4333322 46677777777654
No 472
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=43.04 E-value=1.1e+02 Score=21.28 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDE 147 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~ 147 (630)
+..+...|...-..| ++++|+.+|..++..+....
T Consensus 6 a~~l~~~Av~~D~~g-~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 6 AKELIKQAVKEDEDG-NYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666 99999999999999887653
No 473
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=41.73 E-value=3.4e+02 Score=26.36 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=31.2
Q ss_pred hHHHHHHHhhHHHhh-------c-----cChHHHHHHHHHHHHHHhHhhhcCCCC------CCccchhhHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYS-------F-----KRFSDSLGYLSKANRMLGRLEEEGLGG------SVEDIKPIMHAVHLEL 213 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~-------~-----g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l 213 (630)
+.+..++++|..|.. . ....+|..+|++|--.+.-+.+.-++. ..+|..+....++..+
T Consensus 107 Ek~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~p~~DL~~~~L~aL~~l 183 (353)
T cd09243 107 ELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFVKENYIPKLIEPAEKGSDLDPRVLEAYINQ 183 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCHHHHHHHHHH
Confidence 344555666666632 1 225677778888876665554433221 2345555555554444
No 474
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.72 E-value=5.8e+02 Score=29.08 Aligned_cols=189 Identities=13% Similarity=0.058 Sum_probs=103.8
Q ss_pred HHHHHhhHHHhhccChHHHHHHHHHHHHHHhH------hhhc----C---CCCCCccchhhHHHHHHHHHHHHHHcCCHH
Q 006812 158 MCLQVMGSANYSFKRFSDSLGYLSKANRMLGR------LEEE----G---LGGSVEDIKPIMHAVHLELANVKTAMGRRE 224 (630)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~----~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 224 (630)
.+-+.+|.+|...|+..+|+.+|.+|..-.-+ .... . .+.+.+.........|...-.++..-+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 34567899999999999999999998653211 0000 0 011111111111233444445555556666
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 006812 225 EALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL 304 (630)
Q Consensus 225 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (630)
.+.....+|++. .+.+.|..+..+..+=..+...|.+.+|....-+ .++......++..+..+.+..
T Consensus 1001 ~vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrrdcLRqlvivLfec 1067 (1480)
T KOG4521|consen 1001 EVCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRRDCLRQLVIVLFEC 1067 (1480)
T ss_pred HHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHHhc
Confidence 666666666543 4466788888888888888888888887654422 123334456677777788877
Q ss_pred ccHHHHHH-----HHHHHHH-HHHHc--CCChhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHH
Q 006812 305 EEHQKALE-----QNELSQK-VLKTW--GLSSELLRAEIDAANMQIALGKFEEAINT-LKGVVR 359 (630)
Q Consensus 305 g~~~~A~~-----~~~~a~~-~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~ 359 (630)
|+++.-.. +-++... +.... .........|..|-..+...++|.+|-.+ |+.+..
T Consensus 1068 g~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1068 GELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred cchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 77653221 1111111 11111 11122233444455556677888777654 444443
No 475
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=41.30 E-value=3.4e+02 Score=26.28 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=34.3
Q ss_pred hHHHHHHHhhHHHhhccC---------hHHHHHHHHHHHHHHhHhhhcCC----CCCCccchhhHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKR---------FSDSLGYLSKANRMLGRLEEEGL----GGSVEDIKPIMHAVHLELA 214 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~ 214 (630)
+.+.+++++|.++...+. ..+|..+|++|--++.-+.+.-+ ....+|..+....++..+.
T Consensus 117 Eka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lm 189 (346)
T cd09240 117 EKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKETVLSALQQEPTPDLSPDTLSALSALM 189 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHH
Confidence 345556666666544332 57788899988877766655421 1234566665555544443
No 476
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=41.05 E-value=3.8e+02 Score=26.79 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812 415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAA 479 (630)
Q Consensus 415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 479 (630)
..+.+.|...|..++++..+..=+.. | --++..+++.+-..+.+.|+|..|.+......
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~y-----G-iF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQY-----G-IFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhc-----c-cCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 35566677778888887776654432 2 22344566777778888888888887776543
No 477
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=40.65 E-value=1e+02 Score=26.45 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=38.9
Q ss_pred CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
..|....++.++..-|...|+++-|....+.+++-..+..|.+||++
T Consensus 135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 46777888999999999999999999999999998888888888863
No 478
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=39.97 E-value=1.3e+02 Score=21.01 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=23.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 499 NLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
..|.-.-..|++++|+.+|..+++.+....
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 344455567999999999999999877654
No 479
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=39.94 E-value=3.3e+02 Score=25.68 Aligned_cols=73 Identities=11% Similarity=-0.068 Sum_probs=48.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
-.|+....++..+...+.-| +|..|-.++-.-..+... +++....++..--..-.-..+|+-|++-+.+.-+.
T Consensus 124 f~~e~i~~lykyakfqyeCG-NY~gAs~yLY~~r~l~~~------~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECG-NYSGASDYLYFYRALVSD------PDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CCHHHHHHHHHHHHHHHhcc-CcccHHHHHHHHHHhcCC------cchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45777788999999999999 999998887665444422 22333333332223334567889998888776655
No 480
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=39.57 E-value=1.3e+02 Score=21.11 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHH
Q 006812 546 YSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 546 ~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
....|++++|..+|..+++.+..
T Consensus 16 ~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 16 KEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 34459999999999999999887
No 481
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=38.86 E-value=1.4e+02 Score=21.03 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDE 147 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~ 147 (630)
+..+...|...-..| ++++|+.+|.++++.+....
T Consensus 6 Ai~lv~~Av~~D~~g-~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 6 AIALVVQAVKKDQRG-DAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666 99999999999999887653
No 482
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=38.02 E-value=1.4e+02 Score=20.96 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=22.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 543 SKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 543 a~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
|.-....|++++|..+|.++++.+..
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999998887
No 483
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=37.39 E-value=4e+02 Score=25.94 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=38.4
Q ss_pred hHHHHHHHhhHHHhhc---------cChHHHHHHHHHHHHHHhHhhhcCCCC--CCccchhhHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSF---------KRFSDSLGYLSKANRMLGRLEEEGLGG--SVEDIKPIMHAVHLELAN 215 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~ 215 (630)
+.+.+++++|.++... ...++|..+|++|--++.-+.+.-++. ..+|..+....++..+..
T Consensus 104 Eka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmL 175 (355)
T cd09241 104 ERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLML 175 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHH
Confidence 4455666666666433 337788899999988877776654333 456666666655554443
No 484
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.83 E-value=1.2e+02 Score=27.63 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812 290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES 365 (630)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 365 (630)
......++=..+...++++.|..+.++.+.+ .|....-....|.+|.+.|.+.-|++.+...++..++.+
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDL------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhh------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 4455566667778888888888888777665 566666667778888999998888888888777766554
No 485
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=36.30 E-value=3.7e+02 Score=25.31 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 365 SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 365 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
.+....+++..+...+..|+|..|-.++-....+.... +.......|..+|. -.-..+|+-|++-+.+..++...
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~---d~n~lsalwGKlAS-EIL~qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDP---DRNYLSALWGKLAS-EILTQNWDGALEDLTRLREYIDS 199 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCc---chhhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHcc
Confidence 45556678888888888888888877766554444222 11122334444443 33456788888888777666443
No 486
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=35.87 E-value=4e+02 Score=25.46 Aligned_cols=103 Identities=15% Similarity=0.057 Sum_probs=66.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 006812 419 MQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYN 498 (630)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 498 (630)
.-+...|+...|..+-. +. .-|+-..|......+...++|++=..+... ...| ..|.
T Consensus 185 ~~li~~~~~k~A~kl~k-------~F---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s----------kKsP---IGye 241 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKK-------EF---KVPDKRFWWLKIKALAENKDWDELEKFAKS----------KKSP---IGYE 241 (319)
T ss_pred HHHHHCCCHHHHHHHHH-------Hc---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----------CCCC---CChH
Confidence 33456677665554422 22 124455778888889999999876654321 1223 2455
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006812 499 NLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQR 561 (630)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 561 (630)
-...++...|+..+|..+..++ . . ......|.+.|++.+|.+...+
T Consensus 242 pFv~~~~~~~~~~eA~~yI~k~-~---------~-------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 242 PFVEACLKYGNKKEASKYIPKI-P---------D-------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC-C---------h-------HHHHHHHHHCCCHHHHHHHHHH
Confidence 5667788899999999888872 1 1 3346678999999999877544
No 487
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=35.73 E-value=2.5e+02 Score=26.20 Aligned_cols=61 Identities=23% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 006812 178 GYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAE 257 (630)
Q Consensus 178 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (630)
.++++++++..+..+.+ ..++|++|..+|+.+++ |+..+.
T Consensus 5 ~~l~kaI~lv~kA~~eD------------------------~a~nY~eA~~lY~~ale----------------YF~~~l 44 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDED------------------------NAKNYEEALRLYQNALE----------------YFLHAL 44 (439)
T ss_pred hHHHHHHHHHHHHhhhc------------------------chhchHHHHHHHHHHHH----------------HHHHHH
Q ss_pred HHHHhcC------HHHHHHHHHHHHHH
Q 006812 258 AFVAVLN------FKEALPFGLKALEI 278 (630)
Q Consensus 258 ~~~~~g~------~~~A~~~~~~al~~ 278 (630)
-|...+. -.+..+|+.+|-++
T Consensus 45 KYE~~~~kaKd~IraK~~EYLdRAEkL 71 (439)
T KOG0739|consen 45 KYEANNKKAKDSIRAKFTEYLDRAEKL 71 (439)
T ss_pred HhhhcChhHHHHHHHHHHHHHHHHHHH
No 488
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.36 E-value=1.6e+02 Score=22.00 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG 570 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 570 (630)
..+..||.+|...|+.+.|..-|+.--.+|+..+
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 5778899999999999999999987666665433
No 489
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=35.24 E-value=2.3e+02 Score=22.65 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=47.1
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHH---------HHHHHHHhcC
Q 006812 459 GWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF---------AKDIMDVSLG 529 (630)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------al~~~~~~~~ 529 (630)
...+...+.......+++..+.. + +........+..+|... +..+.+++++. ++.++.+.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~-------~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~-- 82 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKL-------N-SENPALQTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEKA-- 82 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHcc-------C-ccchhHHHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHHc--
Confidence 34445567888888888887762 1 23344566677777654 34555555552 22222210
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006812 530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQ 560 (630)
Q Consensus 530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 560 (630)
..+.....+|.+.|++++|+..+-
T Consensus 83 -------~l~~~~~~l~~k~~~~~~Al~~~l 106 (140)
T smart00299 83 -------KLYEEAVELYKKDGNFKDAIVTLI 106 (140)
T ss_pred -------CcHHHHHHHHHhhcCHHHHHHHHH
Confidence 123345556677777777776644
No 490
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=35.05 E-value=4.4e+02 Score=25.80 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=38.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH--HHHcCChhhHHHHHH
Q 006812 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL--LLLTGKVPQAIPYLE 476 (630)
Q Consensus 417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~ 476 (630)
.+...+..++|..|...|.++... ...+........+..++.. ++..-++++|.++++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r--~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRR--LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 455677889999999999988764 1111222234455555554 456788899999988
No 491
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=34.75 E-value=63 Score=31.16 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 006812 510 PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSY-----TLAIEFQQRAIDAWESHGPSAQDELREAR 581 (630)
Q Consensus 510 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~al~~~~~~~~~~~~~~~~A~ 581 (630)
...|+.++++|.. .+.| ++|..+|.++..+|+. .+=..+|++|.++..+-....+|.++.-.
T Consensus 334 ~~~Al~yL~kA~d-------~ddP---etWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diL 400 (404)
T PF12753_consen 334 IKKALEYLKKAQD-------EDDP---ETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDIL 400 (404)
T ss_dssp HHHHHHHHHHHHH-------S--T---THHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred HHHHHHHHHHhhc-------cCCh---hHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 3456666666654 3445 4555566665555543 23457788888877775555556555443
No 492
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=34.58 E-value=1.9e+02 Score=26.18 Aligned_cols=60 Identities=13% Similarity=-0.010 Sum_probs=46.8
Q ss_pred hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE 238 (630)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 238 (630)
..-....|.+++..|+-.++.-.+.. .+..+.+..+..|+...+|+-|..+|..|+.+..
T Consensus 51 s~~~~~n~~e~~d~ALm~Ae~r~D~~----------~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 51 SDATMENAKELLDKALMTAEGRGDRS----------KIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred cccChhhHHHHHHHHHHhhhccCCcc----------eeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 34456789999999998877665554 4445566778889999999999999999987753
No 493
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.48 E-value=4.7e+02 Score=25.90 Aligned_cols=115 Identities=13% Similarity=0.050 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
....+.....+.++....++..|...+.+..-.+..... ......+...++.++.+.+..-.+..+.-.++....+. .
T Consensus 270 ~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~-~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey-~ 347 (482)
T KOG4322|consen 270 QQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCN-EEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY-S 347 (482)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh-c
Confidence 344566677899999999999999998887654333211 11124567788888888888888888777777655443 2
Q ss_pred CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
.+...+.+-..++......|..+.|+..+..++....
T Consensus 348 -ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il 384 (482)
T KOG4322|consen 348 -LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLIL 384 (482)
T ss_pred -cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHH
Confidence 2223334445788888889999999999999887543
No 494
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=34.02 E-value=4.5e+02 Score=25.51 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=36.7
Q ss_pred hHHHHHHHhhHHHhhcc---------ChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFK---------RFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELA 214 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (630)
+.+.+++++|.++...+ ...+|..+|++|--+++-+.+.-++...+|..+....++..+.
T Consensus 105 Eka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~~~~~ps~Dl~~~~l~~L~~lm 173 (348)
T cd09242 105 EKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINENFLHAPSVDLQQENVKFLVKLM 173 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHHH
Confidence 45556666666665433 3677888999988777766554334445566666555554443
No 495
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.97 E-value=1.9e+02 Score=21.14 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVL 143 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 143 (630)
-+.+..|+.=+..|+..| |+-.|..++.-+-...
T Consensus 38 ~~ma~~Y~~Dakyf~ekG-D~vtAfa~~sYa~g~l 71 (90)
T COG1849 38 VDMAESYFEDAKYFLEKG-DYVTAFAALSYAHGWL 71 (90)
T ss_pred HHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHH
Confidence 466778888888888888 9999988887665444
No 496
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=33.92 E-value=2.1e+02 Score=28.93 Aligned_cols=98 Identities=8% Similarity=0.057 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812 331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV 410 (630)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 410 (630)
+..|..+-.-|...+++++|+++++-.-+ ...|..+|-+.....+..-++..|..+.++.+-.....-...
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~e---------qTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~l 643 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQE---------QTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKAL 643 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhccc---------hHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhcc
Confidence 33445556667788999999998875432 224555555555555555555555544443321100000000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 411 ADAYSEISMQYESMNEFETAISLLKRT 437 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~~~~A~~~~~~a 437 (630)
..--..+|......|+..+|...+.++
T Consensus 644 tske~~mA~~~l~~G~~~eAe~iLl~~ 670 (737)
T KOG1524|consen 644 TSKEEQMAENSLMLGRMLEAETILLHG 670 (737)
T ss_pred CcHHHHHHHHHHHhccchhhhHHHHhc
Confidence 111234556666677777777766654
No 497
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.62 E-value=1.5e+02 Score=28.26 Aligned_cols=106 Identities=12% Similarity=0.038 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHH-HH
Q 006812 335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVA-DA 413 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~ 413 (630)
..++......+.....+....+++.............+..+-.+....++|.-+..+++.-+--..+..+..++... ..
T Consensus 106 ~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y 185 (422)
T KOG2582|consen 106 HDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLY 185 (422)
T ss_pred HHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHH
Confidence 34455555666666666666666665544433333455555666667777776666554332222222223334443 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 414 YSEISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 414 ~~~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
++.-|.++...++++.|+.+|+.++.+
T Consensus 186 ~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 186 LYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHhcceeeeccccHHHHHHHHHHHHhc
Confidence 455567888999999999999988774
No 498
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.27 E-value=68 Score=17.15 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=13.1
Q ss_pred CChhHHHHHHHHHHHH
Q 006812 508 DRPQSAAQVFAFAKDI 523 (630)
Q Consensus 508 g~~~~A~~~~~~al~~ 523 (630)
|+.+.|...|++++..
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5678889999999874
No 499
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=32.63 E-value=76 Score=28.58 Aligned_cols=61 Identities=11% Similarity=-0.028 Sum_probs=50.4
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc
Q 006812 304 LEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE 364 (630)
Q Consensus 304 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 364 (630)
.-....|.+++.+|+-.++..|+......+....+..|+...+|+.|..+|..+.....++
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 52 DATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred ccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3456778899999999888888887777777778888999999999999999998876554
No 500
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.50 E-value=2.3e+02 Score=30.23 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=70.6
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhcCCCCHHHH
Q 006812 459 GWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL--DRPQSAAQVFAFAKDIMDVSLGPHHADSI 536 (630)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 536 (630)
+...+..+++..|.--|..++.+. ..+|...+....+.+.++... |+|..++.--.-++. ..|...
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~ll----p~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~--------~~p~i~ 127 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLL----PKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALE--------SQPRIS 127 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheec----cccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhh--------ccchHH
Confidence 456677778888876676666643 246777777888888888765 577777776666665 668888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCc
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSA 573 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 573 (630)
.++...+.+|...+..+-|.+. +.+.....|..
T Consensus 128 ~~Ll~r~~~y~al~k~d~a~rd----l~i~~~~~p~~ 160 (748)
T KOG4151|consen 128 KALLKRARKYEALNKLDLAVRD----LRIVEKMDPSN 160 (748)
T ss_pred HHHhhhhhHHHHHHHHHHHHHH----HHHHhcCCCCc
Confidence 8888889999999987777766 44555544443
Done!