Query 006812
Match_columns 630
No_of_seqs 1297 out of 4176
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 09:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-35 3.9E-40 293.5 36.9 365 117-565 4-368 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 6.3E-35 2.1E-39 288.1 38.6 360 108-551 29-388 (388)
3 2gw1_A Mitochondrial precursor 100.0 9.8E-32 3.3E-36 276.3 37.5 394 109-566 3-479 (514)
4 3fp2_A TPR repeat-containing p 100.0 4.7E-31 1.6E-35 272.8 38.7 391 109-568 22-494 (537)
5 2xpi_A Anaphase-promoting comp 100.0 7.4E-31 2.5E-35 274.9 39.2 395 109-565 147-579 (597)
6 2xpi_A Anaphase-promoting comp 100.0 7.9E-31 2.7E-35 274.7 37.7 417 111-591 83-580 (597)
7 4g1t_A Interferon-induced prot 100.0 3.6E-31 1.2E-35 268.7 31.7 390 107-571 46-465 (472)
8 3sf4_A G-protein-signaling mod 100.0 1.9E-29 6.5E-34 250.8 41.1 344 156-520 8-373 (406)
9 3sf4_A G-protein-signaling mod 100.0 2.9E-29 1E-33 249.4 39.2 344 110-477 7-372 (406)
10 2y4t_A DNAJ homolog subfamily 100.0 1.4E-29 4.6E-34 255.5 36.5 385 107-556 21-445 (450)
11 2y4t_A DNAJ homolog subfamily 100.0 2.7E-29 9.4E-34 253.3 36.7 376 154-595 23-439 (450)
12 2gw1_A Mitochondrial precursor 100.0 1.8E-28 6E-33 252.0 39.0 365 112-523 39-478 (514)
13 3ieg_A DNAJ homolog subfamily 100.0 5E-28 1.7E-32 236.2 35.7 329 157-550 3-354 (359)
14 3fp2_A TPR repeat-containing p 100.0 6.5E-28 2.2E-32 249.2 38.1 364 108-524 55-492 (537)
15 4a1s_A PINS, partner of inscut 100.0 8.1E-28 2.8E-32 239.3 37.4 314 246-570 45-377 (411)
16 4a1s_A PINS, partner of inscut 100.0 1.8E-27 6.2E-32 236.8 39.6 312 154-484 45-375 (411)
17 3ro2_A PINS homolog, G-protein 100.0 3.8E-27 1.3E-31 227.7 38.1 311 249-570 5-337 (338)
18 4g1t_A Interferon-induced prot 100.0 2.7E-28 9.2E-33 247.6 31.1 347 128-523 26-401 (472)
19 3ieg_A DNAJ homolog subfamily 100.0 3.2E-27 1.1E-31 230.4 37.6 332 112-508 3-354 (359)
20 3ro2_A PINS homolog, G-protein 100.0 1E-26 3.5E-31 224.6 39.8 309 157-484 5-335 (338)
21 2xm6_A Protein corresponding t 100.0 4.4E-26 1.5E-30 231.5 44.7 378 110-591 37-468 (490)
22 3ulq_A Response regulator aspa 100.0 3.6E-25 1.2E-29 217.4 41.5 344 211-571 16-374 (383)
23 3ulq_A Response regulator aspa 100.0 1E-24 3.5E-29 214.2 38.6 345 159-529 14-374 (383)
24 1fch_A Peroxisomal targeting s 100.0 3.6E-27 1.2E-31 230.9 21.0 310 216-568 34-362 (368)
25 3hym_B Cell division cycle pro 100.0 2.2E-26 7.4E-31 221.7 25.2 296 208-553 23-322 (330)
26 1fch_A Peroxisomal targeting s 99.9 9.3E-27 3.2E-31 228.0 21.2 317 121-487 34-365 (368)
27 2xm6_A Protein corresponding t 99.9 2.2E-24 7.7E-29 218.9 36.9 339 111-548 74-452 (490)
28 4eqf_A PEX5-related protein; a 99.9 1.8E-25 6.3E-30 218.4 25.0 286 248-568 64-359 (365)
29 3hym_B Cell division cycle pro 99.9 4.5E-25 1.5E-29 212.4 27.3 296 159-511 24-322 (330)
30 3q15_A PSP28, response regulat 99.9 9.7E-24 3.3E-28 206.7 36.9 331 217-569 22-369 (378)
31 4eqf_A PEX5-related protein; a 99.9 2.3E-25 7.7E-30 217.7 25.2 288 157-486 65-361 (365)
32 3q15_A PSP28, response regulat 99.9 4.7E-23 1.6E-27 201.8 37.8 334 166-527 21-369 (378)
33 3nf1_A KLC 1, kinesin light ch 99.9 1.9E-23 6.7E-28 199.1 30.5 275 152-442 22-309 (311)
34 3nf1_A KLC 1, kinesin light ch 99.9 3.2E-23 1.1E-27 197.6 31.6 276 241-524 19-308 (311)
35 3cv0_A Peroxisome targeting si 99.9 1.8E-23 6.3E-28 200.9 27.0 284 248-568 20-318 (327)
36 1hz4_A MALT regulatory protein 99.9 2.9E-22 1E-26 196.2 35.4 313 111-444 13-326 (373)
37 3cv0_A Peroxisome targeting si 99.9 2.4E-23 8.4E-28 200.0 26.2 289 156-487 20-321 (327)
38 1hz4_A MALT regulatory protein 99.9 1.4E-21 4.8E-26 191.3 35.5 311 247-572 12-329 (373)
39 3uq3_A Heat shock protein STI1 99.9 1E-21 3.5E-26 181.5 29.2 238 155-444 3-240 (258)
40 3uq3_A Heat shock protein STI1 99.9 2.4E-21 8.1E-26 179.1 31.5 253 247-545 3-256 (258)
41 3edt_B KLC 2, kinesin light ch 99.9 1.8E-21 6.2E-26 182.6 28.8 263 259-523 11-281 (283)
42 3e4b_A ALGK; tetratricopeptide 99.9 4E-22 1.4E-26 198.8 24.9 379 116-594 7-425 (452)
43 3edt_B KLC 2, kinesin light ch 99.9 2.1E-21 7E-26 182.2 28.2 260 128-398 16-281 (283)
44 3u4t_A TPR repeat-containing p 99.9 3.9E-22 1.4E-26 185.9 20.9 244 293-566 5-251 (272)
45 2h6f_A Protein farnesyltransfe 99.9 6.5E-22 2.2E-26 190.6 22.3 256 244-549 92-366 (382)
46 2h6f_A Protein farnesyltransfe 99.9 1.6E-21 5.4E-26 187.9 21.4 256 107-424 92-366 (382)
47 2ooe_A Cleavage stimulation fa 99.9 3.9E-20 1.3E-24 189.7 32.6 412 108-592 9-494 (530)
48 3u4t_A TPR repeat-containing p 99.9 1.5E-21 5.2E-26 181.9 20.1 262 250-549 4-268 (272)
49 2pl2_A Hypothetical conserved 99.9 1.4E-21 4.7E-26 174.5 17.8 198 330-563 4-212 (217)
50 2pl2_A Hypothetical conserved 99.9 2.1E-21 7.1E-26 173.3 18.9 198 291-522 5-213 (217)
51 3e4b_A ALGK; tetratricopeptide 99.9 1.7E-20 5.7E-25 187.1 24.3 357 112-568 35-424 (452)
52 3mkr_A Coatomer subunit epsilo 99.9 4E-20 1.4E-24 172.6 24.6 280 257-591 7-288 (291)
53 3mkr_A Coatomer subunit epsilo 99.9 2.3E-19 7.8E-24 167.4 28.3 280 215-559 7-288 (291)
54 1ouv_A Conserved hypothetical 99.9 3E-19 1E-23 166.3 27.9 223 290-565 5-251 (273)
55 1qqe_A Vesicular transport pro 99.9 2.7E-19 9.3E-24 167.7 26.0 236 298-546 44-284 (292)
56 1qqe_A Vesicular transport pro 99.8 2.9E-19 1E-23 167.5 25.4 222 211-439 41-268 (292)
57 1ouv_A Conserved hypothetical 99.8 9.8E-19 3.3E-23 162.8 27.8 223 248-523 5-251 (273)
58 2ifu_A Gamma-SNAP; membrane fu 99.8 6.9E-19 2.3E-23 166.3 26.2 246 128-390 6-253 (307)
59 2ifu_A Gamma-SNAP; membrane fu 99.8 2.6E-18 8.9E-23 162.3 28.4 249 169-432 3-253 (307)
60 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.9E-19 6.6E-24 168.0 19.2 258 256-559 12-269 (275)
61 2ooe_A Cleavage stimulation fa 99.8 5.9E-17 2E-21 166.1 38.1 392 108-568 42-495 (530)
62 1xi4_A Clathrin heavy chain; a 99.8 1.1E-16 3.8E-21 169.2 39.8 325 118-562 1055-1381(1630)
63 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.4E-19 4.9E-24 168.8 15.9 253 124-434 17-269 (275)
64 2q7f_A YRRB protein; TPR, prot 99.8 4.4E-19 1.5E-23 162.1 17.5 221 289-550 21-241 (243)
65 4abn_A Tetratricopeptide repea 99.8 5E-18 1.7E-22 170.4 26.2 218 131-394 79-317 (474)
66 3vtx_A MAMA; tetratricopeptide 99.8 2E-18 7E-23 149.9 19.6 168 369-567 5-172 (184)
67 2ho1_A Type 4 fimbrial biogene 99.8 5.2E-18 1.8E-22 155.9 22.5 202 331-565 37-238 (252)
68 4abn_A Tetratricopeptide repea 99.8 2.5E-18 8.4E-23 172.6 21.9 221 175-436 79-317 (474)
69 2q7f_A YRRB protein; TPR, prot 99.8 1.4E-18 4.9E-23 158.7 18.4 219 247-506 21-239 (243)
70 3vtx_A MAMA; tetratricopeptide 99.8 4.8E-18 1.6E-22 147.6 19.5 169 157-363 5-173 (184)
71 2vq2_A PILW, putative fimbrial 99.8 1.5E-17 5.1E-22 149.8 23.4 206 327-565 4-211 (225)
72 2ho1_A Type 4 fimbrial biogene 99.8 1.5E-17 5.2E-22 152.8 23.6 204 156-399 36-239 (252)
73 1xi4_A Clathrin heavy chain; a 99.8 2.1E-16 7.1E-21 167.1 34.0 314 156-560 1104-1440(1630)
74 4gyw_A UDP-N-acetylglucosamine 99.8 2E-18 6.9E-23 179.5 18.1 172 366-568 6-177 (723)
75 2vq2_A PILW, putative fimbrial 99.8 5.2E-17 1.8E-21 146.3 24.6 206 154-399 5-212 (225)
76 4gyw_A UDP-N-acetylglucosamine 99.8 8E-18 2.7E-22 175.0 21.1 173 327-526 5-177 (723)
77 3n71_A Histone lysine methyltr 99.8 1.5E-17 5E-22 164.3 20.9 152 415-566 313-465 (490)
78 4i17_A Hypothetical protein; T 99.8 3.6E-17 1.2E-21 147.6 19.7 183 331-546 7-224 (228)
79 3qky_A Outer membrane assembly 99.7 5.2E-17 1.8E-21 149.8 19.1 208 205-431 13-252 (261)
80 3qky_A Outer membrane assembly 99.7 6.3E-17 2.1E-21 149.3 19.4 208 155-389 13-252 (261)
81 2qfc_A PLCR protein; TPR, HTH, 99.7 8.3E-16 2.8E-20 144.3 25.1 195 329-527 73-270 (293)
82 4i17_A Hypothetical protein; T 99.7 2.9E-16 9.8E-21 141.6 20.9 198 158-400 8-211 (228)
83 3n71_A Histone lysine methyltr 99.7 1.5E-16 5.2E-21 157.1 20.0 152 373-524 313-465 (490)
84 4b4t_Q 26S proteasome regulato 99.7 1.7E-15 5.9E-20 151.4 27.3 243 161-407 8-254 (434)
85 3u3w_A Transcriptional activat 99.7 3.1E-16 1.1E-20 147.2 20.3 193 331-527 75-270 (293)
86 3gw4_A Uncharacterized protein 99.7 3.3E-15 1.1E-19 131.9 23.9 191 218-420 3-196 (203)
87 3gw4_A Uncharacterized protein 99.7 2E-15 6.7E-20 133.4 22.2 194 342-545 3-196 (203)
88 4b4t_Q 26S proteasome regulato 99.7 1.2E-14 4.2E-19 145.1 30.5 236 252-489 7-253 (434)
89 3u3w_A Transcriptional activat 99.7 1E-15 3.5E-20 143.6 21.1 196 155-363 73-269 (293)
90 2pzi_A Probable serine/threoni 99.7 4.3E-16 1.5E-20 163.4 20.3 224 328-590 391-623 (681)
91 1b89_A Protein (clathrin heavy 99.7 1.5E-17 5.2E-22 157.7 8.3 287 128-518 18-306 (449)
92 2qfc_A PLCR protein; TPR, HTH, 99.7 1E-15 3.4E-20 143.7 20.6 195 156-364 74-270 (293)
93 2ond_A Cleavage stimulation fa 99.7 1.3E-15 4.5E-20 144.0 20.6 224 308-569 33-274 (308)
94 2ond_A Cleavage stimulation fa 99.7 7.1E-15 2.4E-19 138.9 24.7 225 130-401 33-273 (308)
95 1b89_A Protein (clathrin heavy 99.7 6.7E-17 2.3E-21 153.3 7.8 296 165-562 11-308 (449)
96 3as5_A MAMA; tetratricopeptide 99.7 2.6E-15 8.8E-20 130.5 16.3 170 368-568 7-176 (186)
97 3ro3_A PINS homolog, G-protein 99.7 2.5E-14 8.5E-19 121.2 21.8 156 204-363 6-161 (164)
98 3ro3_A PINS homolog, G-protein 99.6 2.1E-14 7.3E-19 121.6 20.3 158 154-325 6-163 (164)
99 4ga2_A E3 SUMO-protein ligase 99.6 1.2E-15 3.9E-20 126.7 11.7 147 374-551 2-149 (150)
100 3as5_A MAMA; tetratricopeptide 99.6 1E-14 3.5E-19 126.6 18.0 172 246-443 5-176 (186)
101 3qww_A SET and MYND domain-con 99.6 7.7E-15 2.6E-19 142.5 18.4 122 422-543 309-431 (433)
102 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.2E-14 7.4E-19 128.6 19.8 176 208-397 5-212 (225)
103 4ga2_A E3 SUMO-protein ligase 99.6 1.6E-15 5.6E-20 125.8 11.1 147 212-384 2-149 (150)
104 2yhc_A BAMD, UPF0169 lipoprote 99.6 5.7E-14 1.9E-18 125.9 22.0 175 371-565 6-213 (225)
105 3urz_A Uncharacterized protein 99.6 3.7E-14 1.3E-18 125.2 18.7 165 249-440 4-186 (208)
106 2pzi_A Probable serine/threoni 99.6 4.4E-15 1.5E-19 155.8 14.7 201 218-445 402-603 (681)
107 3qwp_A SET and MYND domain-con 99.6 1.2E-14 4.2E-19 141.6 16.5 129 421-549 297-426 (429)
108 3qww_A SET and MYND domain-con 99.6 1.5E-14 5.1E-19 140.5 16.3 112 464-575 310-422 (433)
109 3urz_A Uncharacterized protein 99.6 4.6E-14 1.6E-18 124.6 17.3 168 157-363 4-189 (208)
110 3rjv_A Putative SEL1 repeat pr 99.5 2.2E-13 7.7E-18 120.4 17.1 176 349-565 4-197 (212)
111 3qwp_A SET and MYND domain-con 99.5 1.5E-13 5.1E-18 134.0 15.7 131 377-507 295-426 (429)
112 4gco_A Protein STI-1; structur 99.5 1.9E-13 6.6E-18 109.1 13.4 116 408-546 10-125 (126)
113 4gco_A Protein STI-1; structur 99.5 3.7E-13 1.2E-17 107.5 14.3 117 244-378 8-124 (126)
114 3rjv_A Putative SEL1 repeat pr 99.5 1.1E-12 3.7E-17 116.0 18.8 176 309-523 4-197 (212)
115 2r5s_A Uncharacterized protein 99.5 1.2E-13 4E-18 118.5 11.5 164 293-480 8-172 (176)
116 2r5s_A Uncharacterized protein 99.5 1.4E-13 4.9E-18 117.9 12.0 163 371-565 8-173 (176)
117 4gcn_A Protein STI-1; structur 99.5 1.1E-12 3.7E-17 105.0 16.3 109 154-279 5-113 (127)
118 4e6h_A MRNA 3'-END-processing 99.5 2.3E-10 7.9E-15 117.7 37.3 230 310-568 328-573 (679)
119 3qou_A Protein YBBN; thioredox 99.5 3.5E-13 1.2E-17 125.5 14.7 166 369-565 117-284 (287)
120 3dra_A Protein farnesyltransfe 99.5 1.9E-11 6.5E-16 112.7 25.3 238 262-544 46-301 (306)
121 3dra_A Protein farnesyltransfe 99.5 8.6E-12 2.9E-16 115.0 22.8 235 292-564 34-286 (306)
122 3qou_A Protein YBBN; thioredox 99.5 1.2E-12 4.2E-17 121.8 17.0 168 291-481 117-284 (287)
123 3gyz_A Chaperone protein IPGC; 99.5 6.2E-13 2.1E-17 109.3 12.6 117 449-586 33-149 (151)
124 4gcn_A Protein STI-1; structur 99.5 4.2E-12 1.5E-16 101.6 16.7 108 408-523 5-112 (127)
125 4f3v_A ESX-1 secretion system 99.4 9.9E-13 3.4E-17 117.9 13.3 202 293-523 9-237 (282)
126 1p5q_A FKBP52, FK506-binding p 99.4 2.8E-13 9.7E-18 129.0 10.4 164 381-568 125-297 (336)
127 2vsy_A XCC0866; transferase, g 99.4 1.2E-12 4E-17 135.3 15.0 156 382-568 2-160 (568)
128 4f3v_A ESX-1 secretion system 99.4 3.1E-12 1.1E-16 114.7 14.5 207 333-565 9-237 (282)
129 2hr2_A Hypothetical protein; a 99.4 1.5E-11 5.2E-16 99.2 16.7 119 452-571 11-137 (159)
130 3gyz_A Chaperone protein IPGC; 99.4 6.3E-13 2.2E-17 109.2 8.8 103 407-524 32-134 (151)
131 2vsy_A XCC0866; transferase, g 99.4 3.1E-12 1.1E-16 132.2 16.1 158 170-365 2-162 (568)
132 1p5q_A FKBP52, FK506-binding p 99.4 1.1E-12 3.7E-17 125.0 10.9 161 169-359 125-293 (336)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.4 4.8E-12 1.6E-16 112.4 13.6 155 410-585 5-167 (213)
134 2fo7_A Synthetic consensus TPR 99.4 1.8E-11 6E-16 99.5 15.8 131 412-565 2-132 (136)
135 2hr2_A Hypothetical protein; a 99.4 1.8E-11 6.3E-16 98.7 15.3 122 156-282 10-135 (159)
136 1a17_A Serine/threonine protei 99.4 2.3E-11 7.7E-16 103.1 16.4 142 409-571 11-152 (166)
137 3upv_A Heat shock protein STI1 99.4 3.1E-11 1.1E-15 96.7 15.7 122 110-260 2-123 (126)
138 4e6h_A MRNA 3'-END-processing 99.3 1.7E-09 5.7E-14 111.3 31.6 406 128-593 47-573 (679)
139 1a17_A Serine/threonine protei 99.3 4.8E-11 1.6E-15 101.0 16.8 138 330-484 12-149 (166)
140 2fo7_A Synthetic consensus TPR 99.3 5.3E-11 1.8E-15 96.6 16.3 131 292-440 2-132 (136)
141 2vgx_A Chaperone SYCD; alterna 99.3 1.3E-11 4.5E-16 101.7 12.4 121 451-588 20-140 (148)
142 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2.1E-11 7.2E-16 108.2 14.3 138 208-364 7-154 (213)
143 2vgx_A Chaperone SYCD; alterna 99.3 1.4E-11 4.8E-16 101.5 12.2 103 408-525 18-120 (148)
144 2xcb_A PCRH, regulatory protei 99.3 3.3E-11 1.1E-15 98.8 14.4 124 450-590 16-139 (142)
145 2fbn_A 70 kDa peptidylprolyl i 99.3 3.5E-12 1.2E-16 111.7 8.6 166 374-563 9-184 (198)
146 3upv_A Heat shock protein STI1 99.3 5.4E-11 1.8E-15 95.3 14.6 121 155-301 2-122 (126)
147 2c2l_A CHIP, carboxy terminus 99.3 2E-11 6.8E-16 113.1 13.1 195 330-564 3-198 (281)
148 2c2l_A CHIP, carboxy terminus 99.3 1.5E-11 5.1E-16 114.0 10.5 194 157-397 4-198 (281)
149 2fbn_A 70 kDa peptidylprolyl i 99.3 1.5E-11 5.3E-16 107.5 9.8 160 212-389 9-176 (198)
150 3sz7_A HSC70 cochaperone (SGT) 99.3 9.5E-11 3.2E-15 98.9 14.4 105 449-569 8-112 (164)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 9.6E-12 3.3E-16 123.8 9.3 159 381-563 246-413 (457)
152 3rkv_A Putative peptidylprolyl 99.3 1.5E-10 5.1E-15 97.4 15.2 112 109-237 8-127 (162)
153 2lni_A Stress-induced-phosphop 99.2 7.8E-11 2.7E-15 95.4 12.0 123 406-551 11-133 (133)
154 3rkv_A Putative peptidylprolyl 99.2 2.2E-10 7.5E-15 96.4 14.7 108 205-320 9-126 (162)
155 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 4E-11 1.4E-15 119.3 11.8 155 219-391 246-407 (457)
156 2lni_A Stress-induced-phosphop 99.2 2.7E-10 9.3E-15 92.1 14.8 123 244-384 11-133 (133)
157 2vyi_A SGTA protein; chaperone 99.2 1.8E-10 6.1E-15 92.9 13.3 123 407-552 8-130 (131)
158 3sz7_A HSC70 cochaperone (SGT) 99.2 3.4E-10 1.1E-14 95.5 15.4 108 245-366 7-114 (164)
159 3q49_B STIP1 homology and U bo 99.2 3.9E-10 1.3E-14 91.8 15.3 106 451-572 8-113 (137)
160 1wao_1 Serine/threonine protei 99.2 6.8E-12 2.3E-16 125.3 5.6 196 369-587 6-235 (477)
161 2xcb_A PCRH, regulatory protei 99.2 4.1E-10 1.4E-14 92.2 15.0 109 244-366 13-121 (142)
162 2vyi_A SGTA protein; chaperone 99.2 4.5E-10 1.5E-14 90.4 14.5 124 244-385 7-130 (131)
163 3dss_A Geranylgeranyl transfer 99.2 1.5E-08 5.1E-13 93.8 25.5 236 260-544 40-317 (331)
164 3q7a_A Farnesyltransferase alp 99.2 4.6E-09 1.6E-13 97.6 21.9 242 205-480 52-330 (349)
165 1wao_1 Serine/threonine protei 99.2 2.1E-11 7.2E-16 121.8 6.6 178 289-484 4-200 (477)
166 3mv2_B Coatomer subunit epsilo 99.2 9.8E-10 3.3E-14 99.9 16.6 274 257-591 21-306 (310)
167 3q7a_A Farnesyltransferase alp 99.2 1.2E-08 4E-13 94.9 24.0 232 166-439 63-330 (349)
168 2e2e_A Formate-dependent nitri 99.2 1.2E-10 4.1E-15 99.7 10.1 125 421-568 20-147 (177)
169 1hxi_A PEX5, peroxisome target 99.2 9.2E-11 3.2E-15 92.7 8.6 100 453-568 18-117 (121)
170 3dss_A Geranylgeranyl transfer 99.1 8.6E-08 2.9E-12 88.8 29.0 224 217-481 39-304 (331)
171 2e2e_A Formate-dependent nitri 99.1 5.7E-10 2E-14 95.5 13.4 119 343-480 22-143 (177)
172 1na0_A Designed protein CTPR3; 99.1 1E-09 3.6E-14 87.4 13.7 118 410-550 8-125 (125)
173 1ihg_A Cyclophilin 40; ppiase 99.1 1.5E-09 5E-14 104.4 16.5 130 207-350 223-360 (370)
174 2xev_A YBGF; tetratricopeptide 99.1 1.6E-09 5.5E-14 87.0 14.2 102 413-524 4-106 (129)
175 1elr_A TPR2A-domain of HOP; HO 99.1 2.1E-09 7.1E-14 86.5 14.6 107 155-278 2-108 (131)
176 3q49_B STIP1 homology and U bo 99.1 2E-09 6.7E-14 87.5 14.0 103 289-401 7-109 (137)
177 1ihg_A Cyclophilin 40; ppiase 99.1 1.1E-09 3.8E-14 105.2 14.2 136 110-270 221-362 (370)
178 1na0_A Designed protein CTPR3; 99.1 2.6E-09 9E-14 85.0 14.1 118 290-425 8-125 (125)
179 3mv2_B Coatomer subunit epsilo 99.1 3.6E-08 1.2E-12 89.7 22.8 179 292-492 101-288 (310)
180 2xev_A YBGF; tetratricopeptide 99.1 3.5E-09 1.2E-13 85.0 14.8 101 210-320 5-105 (129)
181 1elr_A TPR2A-domain of HOP; HO 99.1 4.4E-09 1.5E-13 84.5 15.1 123 330-465 3-125 (131)
182 1elw_A TPR1-domain of HOP; HOP 99.1 3.1E-09 1.1E-13 83.6 13.9 113 411-546 4-116 (118)
183 1hxi_A PEX5, peroxisome target 99.1 6.7E-10 2.3E-14 87.7 9.7 98 159-280 19-116 (121)
184 2if4_A ATFKBP42; FKBP-like, al 99.1 3.1E-10 1.1E-14 108.0 8.7 145 408-568 176-331 (338)
185 3k9i_A BH0479 protein; putativ 99.0 7.7E-10 2.6E-14 87.0 8.1 90 464-566 2-91 (117)
186 2if4_A ATFKBP42; FKBP-like, al 99.0 1E-09 3.5E-14 104.5 9.9 147 109-280 176-330 (338)
187 1elw_A TPR1-domain of HOP; HOP 99.0 7.4E-09 2.5E-13 81.4 13.0 113 291-421 4-116 (118)
188 2dba_A Smooth muscle cell asso 99.0 4.6E-09 1.6E-13 86.6 11.9 104 204-320 25-128 (148)
189 2dba_A Smooth muscle cell asso 99.0 3.5E-09 1.2E-13 87.3 11.1 109 246-365 25-133 (148)
190 2kck_A TPR repeat; tetratricop 99.0 1.1E-09 3.9E-14 85.2 7.5 98 452-565 6-106 (112)
191 1zu2_A Mitochondrial import re 98.9 1.8E-09 6.2E-14 86.9 6.6 107 463-590 13-140 (158)
192 3k9i_A BH0479 protein; putativ 98.9 7.5E-09 2.6E-13 81.3 9.1 94 261-365 2-95 (117)
193 2kck_A TPR repeat; tetratricop 98.9 5.4E-09 1.8E-13 81.3 7.8 97 411-522 6-105 (112)
194 1dce_A Protein (RAB geranylger 98.8 4.7E-08 1.6E-12 99.3 16.2 174 346-554 44-244 (567)
195 1dce_A Protein (RAB geranylger 98.8 5.4E-08 1.8E-12 98.9 16.2 175 305-512 43-244 (567)
196 2kat_A Uncharacterized protein 98.8 3.4E-08 1.2E-12 77.2 11.5 87 469-571 2-88 (115)
197 2uy1_A Cleavage stimulation fa 98.8 5.3E-06 1.8E-10 82.9 30.1 103 128-277 10-117 (493)
198 2uy1_A Cleavage stimulation fa 98.8 2.3E-06 7.7E-11 85.5 27.0 345 169-592 6-415 (493)
199 1klx_A Cysteine rich protein B 98.8 6.3E-08 2.2E-12 78.2 12.2 110 425-565 9-126 (138)
200 2l6j_A TPR repeat-containing p 98.8 2.6E-09 9E-14 83.0 2.6 99 452-560 4-102 (111)
201 2l6j_A TPR repeat-containing p 98.7 1.4E-08 4.9E-13 78.8 5.5 100 156-273 3-102 (111)
202 3ma5_A Tetratricopeptide repea 98.7 8.3E-08 2.8E-12 72.6 9.6 75 490-572 3-77 (100)
203 1klx_A Cysteine rich protein B 98.7 1.4E-07 4.8E-12 76.2 11.2 110 383-523 9-126 (138)
204 1zu2_A Mitochondrial import re 98.7 5.8E-08 2E-12 78.1 8.6 87 303-399 14-121 (158)
205 1na3_A Designed protein CTPR2; 98.7 8.8E-08 3E-12 71.0 8.9 84 451-550 8-91 (91)
206 2kat_A Uncharacterized protein 98.6 3.1E-07 1.1E-11 71.6 11.1 85 266-364 2-86 (115)
207 4g26_A Pentatricopeptide repea 98.6 4E-06 1.4E-10 83.7 21.7 167 371-564 28-203 (501)
208 1na3_A Designed protein CTPR2; 98.6 4.9E-07 1.7E-11 66.8 11.3 87 287-383 5-91 (91)
209 3ma5_A Tetratricopeptide repea 98.6 4.7E-07 1.6E-11 68.3 10.6 71 154-240 4-74 (100)
210 4g26_A Pentatricopeptide repea 98.6 7.1E-06 2.4E-10 81.9 21.6 168 333-523 28-204 (501)
211 3txn_A 26S proteasome regulato 98.4 4.5E-05 1.5E-09 72.1 21.4 213 292-512 20-238 (394)
212 3u64_A Protein TP_0956; tetrat 98.4 0.00012 4.1E-09 64.9 22.1 207 165-401 33-272 (301)
213 2kc7_A BFR218_protein; tetratr 98.4 4.4E-07 1.5E-11 68.4 5.3 60 456-523 4-64 (99)
214 3txn_A 26S proteasome regulato 98.4 0.00016 5.4E-09 68.4 23.6 214 250-470 20-238 (394)
215 2v5f_A Prolyl 4-hydroxylase su 98.3 7.2E-06 2.5E-10 62.1 11.2 71 112-186 5-75 (104)
216 2v5f_A Prolyl 4-hydroxylase su 98.3 2.1E-05 7.3E-10 59.4 13.0 82 412-501 6-87 (104)
217 3u64_A Protein TP_0956; tetrat 98.2 0.00013 4.4E-09 64.7 18.8 105 468-588 179-296 (301)
218 2kc7_A BFR218_protein; tetratr 98.2 8.1E-06 2.8E-10 61.3 9.4 87 295-399 4-91 (99)
219 3ffl_A Anaphase-promoting comp 98.0 9.6E-05 3.3E-09 59.0 12.0 127 411-546 20-165 (167)
220 3ffl_A Anaphase-promoting comp 98.0 0.00031 1.1E-08 56.1 14.5 125 371-504 22-165 (167)
221 3ly7_A Transcriptional activat 98.0 0.00018 6.3E-09 66.7 15.3 132 162-320 201-339 (372)
222 1pc2_A Mitochondria fission pr 98.0 0.00022 7.4E-09 56.7 13.2 82 469-565 15-100 (152)
223 3ly7_A Transcriptional activat 97.9 0.00067 2.3E-08 63.0 18.3 122 346-481 214-339 (372)
224 3bee_A Putative YFRE protein; 97.9 4.9E-05 1.7E-09 55.7 7.9 70 491-568 3-75 (93)
225 3bee_A Putative YFRE protein; 97.8 0.00014 4.7E-09 53.2 8.8 67 291-363 6-75 (93)
226 1pc2_A Mitochondria fission pr 97.8 0.00077 2.6E-08 53.5 13.4 82 428-523 15-100 (152)
227 4b4t_P 26S proteasome regulato 97.7 0.011 3.7E-07 57.8 23.4 215 304-526 29-250 (445)
228 4b4t_P 26S proteasome regulato 97.5 0.031 1.1E-06 54.6 23.8 214 263-485 30-251 (445)
229 4h7y_A Dual specificity protei 97.0 0.013 4.5E-07 45.7 11.7 120 452-584 13-138 (161)
230 4h7y_A Dual specificity protei 96.9 0.023 7.8E-07 44.4 12.3 110 250-366 14-129 (161)
231 1nzn_A CGI-135 protein, fissio 96.7 0.013 4.6E-07 44.6 9.5 67 492-565 33-103 (126)
232 3spa_A Mtrpol, DNA-directed RN 96.6 0.026 8.9E-07 59.5 13.4 105 328-439 124-229 (1134)
233 4b4t_R RPN7, 26S proteasome re 96.5 0.036 1.2E-06 53.9 13.3 105 452-564 131-236 (429)
234 4b4t_R RPN7, 26S proteasome re 96.4 0.03 1E-06 54.5 12.7 111 248-363 130-240 (429)
235 1nzn_A CGI-135 protein, fissio 96.4 0.013 4.6E-07 44.6 7.8 82 428-523 18-103 (126)
236 3spa_A Mtrpol, DNA-directed RN 96.3 0.033 1.1E-06 58.8 12.5 105 409-523 125-230 (1134)
237 3mkq_A Coatomer beta'-subunit; 95.7 0.18 6E-06 54.2 15.7 75 295-395 633-707 (814)
238 3mkq_A Coatomer beta'-subunit; 95.6 0.29 9.8E-06 52.6 17.0 164 335-555 633-802 (814)
239 3o48_A Mitochondria fission 1 95.6 0.18 6.1E-06 38.6 10.5 68 449-523 37-107 (134)
240 3mkq_B Coatomer subunit alpha; 95.2 0.43 1.5E-05 39.0 12.4 24 209-232 36-59 (177)
241 1y8m_A FIS1; mitochondria, unk 95.2 0.41 1.4E-05 37.2 11.4 68 449-523 36-106 (144)
242 4b4t_S RPN3, 26S proteasome re 94.4 0.16 5.6E-06 49.3 9.4 144 167-320 146-299 (523)
243 4ady_A RPN2, 26S proteasome re 94.4 6.4 0.00022 41.8 40.8 174 366-563 410-587 (963)
244 4gns_B Protein CSD3, chitin bi 94.1 0.45 1.6E-05 49.2 12.5 123 424-562 261-397 (754)
245 4b4t_S RPN3, 26S proteasome re 94.0 0.58 2E-05 45.6 12.2 137 301-440 146-299 (523)
246 3o48_A Mitochondria fission 1 93.9 1.7 5.6E-05 33.3 12.1 65 369-440 40-107 (134)
247 3mkq_B Coatomer subunit alpha; 93.7 1.4 4.8E-05 36.0 12.2 45 380-437 16-60 (177)
248 2ff4_A Probable regulatory pro 93.6 0.64 2.2E-05 44.4 11.9 102 463-572 126-242 (388)
249 4gns_B Protein CSD3, chitin bi 93.5 1.6 5.6E-05 45.2 15.2 122 262-395 261-397 (754)
250 2wpv_A GET4, UPF0363 protein Y 93.5 4.4 0.00015 36.8 28.6 121 210-355 36-158 (312)
251 1y8m_A FIS1; mitochondria, unk 93.2 1.8 6.1E-05 33.6 11.3 69 328-399 36-107 (144)
252 3kae_A CDC27, possible protein 93.1 2.1 7.1E-05 34.1 11.5 97 335-440 37-143 (242)
253 2ff4_A Probable regulatory pro 92.8 1.7 5.9E-05 41.4 13.5 102 421-530 125-241 (388)
254 2wpv_A GET4, UPF0363 protein Y 92.5 6.1 0.00021 35.9 23.3 167 375-566 39-218 (312)
255 2npm_A 14-3-3 domain containin 92.1 5.6 0.00019 34.7 17.8 56 385-441 172-228 (260)
256 4ady_A RPN2, 26S proteasome re 90.7 19 0.00066 38.3 23.3 177 155-359 411-588 (963)
257 1o9d_A 14-3-3-like protein C; 90.7 8.1 0.00028 33.7 18.5 54 469-522 152-206 (260)
258 3re2_A Predicted protein; meni 90.3 4.8 0.00016 36.5 12.1 75 496-573 257-333 (472)
259 3lpz_A GET4 (YOR164C homolog); 90.2 11 0.00037 34.5 30.3 241 209-508 37-296 (336)
260 3ubw_A 14-3-3E, 14-3-3 protein 89.9 9.2 0.00032 33.3 20.1 56 385-440 172-228 (261)
261 3lpz_A GET4 (YOR164C homolog); 89.8 12 0.0004 34.3 24.1 169 374-567 40-218 (336)
262 2br9_A 14-3-3E, 14-3-3 protein 89.7 9 0.00031 32.9 20.2 56 385-440 146-202 (234)
263 4fhn_B Nucleoporin NUP120; pro 89.4 16 0.00054 40.7 18.7 100 294-393 845-962 (1139)
264 3kae_A CDC27, possible protein 89.3 7.2 0.00025 31.2 18.3 96 212-320 38-143 (242)
265 1ya0_A SMG-7 transcript varian 89.1 1.3 4.5E-05 43.5 8.7 62 157-234 152-213 (497)
266 3uzd_A 14-3-3 protein gamma; s 88.9 11 0.00037 32.7 20.1 57 385-441 147-204 (248)
267 4b4t_O 26S proteasome regulato 88.5 17 0.00058 34.5 15.9 146 128-280 54-200 (393)
268 1o9d_A 14-3-3-like protein C; 88.3 12 0.00042 32.6 20.6 54 386-439 152-206 (260)
269 3u84_A Menin; MLL, JUND, ledgf 88.1 7.8 0.00027 35.9 12.1 74 496-572 279-354 (550)
270 1ya0_A SMG-7 transcript varian 87.9 1.6 5.5E-05 42.9 8.5 62 370-439 153-214 (497)
271 4fhn_B Nucleoporin NUP120; pro 87.7 6 0.00021 44.0 14.0 103 413-519 844-963 (1139)
272 3iqu_A 14-3-3 protein sigma; s 87.2 13 0.00046 31.8 18.9 56 385-440 149-205 (236)
273 4gq4_A Menin; tumor suppressor 85.3 13 0.00045 34.5 12.1 57 511-570 281-337 (489)
274 4b4t_O 26S proteasome regulato 84.0 30 0.001 32.8 16.1 109 459-567 83-200 (393)
275 3uzd_A 14-3-3 protein gamma; s 82.6 23 0.00079 30.6 23.7 58 468-525 147-205 (248)
276 3iqu_A 14-3-3 protein sigma; s 80.5 27 0.00092 30.0 23.6 58 468-525 149-207 (236)
277 3efz_A 14-3-3 protein; 14-3-3, 80.1 30 0.001 30.2 12.9 96 177-278 118-226 (268)
278 2dl1_A Spartin; SPG20, MIT, st 77.6 18 0.0006 26.8 8.2 42 549-590 35-83 (116)
279 4aez_C MAD3, mitotic spindle c 77.1 33 0.0011 29.1 12.2 84 132-236 96-179 (223)
280 3re2_A Predicted protein; meni 77.1 44 0.0015 30.5 13.0 76 250-328 256-333 (472)
281 2crb_A Nuclear receptor bindin 76.3 11 0.00039 26.3 6.4 38 202-239 10-47 (97)
282 1zbp_A Hypothetical protein VP 74.6 44 0.0015 29.3 11.7 55 461-523 6-60 (273)
283 2o8p_A 14-3-3 domain containin 73.1 43 0.0015 28.5 23.1 175 336-524 11-198 (227)
284 1zbp_A Hypothetical protein VP 72.7 49 0.0017 29.0 12.1 124 300-444 6-133 (273)
285 4gq4_A Menin; tumor suppressor 71.6 67 0.0023 30.1 12.6 75 250-327 263-339 (489)
286 3efz_A 14-3-3 protein; 14-3-3, 71.4 14 0.00047 32.3 7.5 56 510-565 168-226 (268)
287 1zb1_A BRO1 protein; AIP1, BRO 70.5 73 0.0025 30.1 15.3 42 172-213 144-185 (392)
288 3u84_A Menin; MLL, JUND, ledgf 70.2 71 0.0024 29.8 13.0 60 267-329 297-356 (550)
289 2br9_A 14-3-3E, 14-3-3 protein 69.9 53 0.0018 28.2 25.1 80 510-589 146-227 (234)
290 3r9m_A BRO1 domain-containing 69.5 75 0.0026 29.8 15.2 60 155-214 112-189 (376)
291 3t5v_B Nuclear mRNA export pro 68.4 37 0.0013 32.8 10.7 75 206-281 175-253 (455)
292 3eab_A Spastin; spastin, MIT, 68.1 22 0.00077 24.8 6.5 42 550-591 33-78 (89)
293 2cpt_A SKD1 protein, vacuolar 67.9 35 0.0012 25.5 10.4 36 112-148 18-53 (117)
294 3ubw_A 14-3-3E, 14-3-3 protein 67.8 62 0.0021 28.2 25.1 80 510-589 172-253 (261)
295 2crb_A Nuclear receptor bindin 66.8 18 0.00062 25.3 5.7 36 408-443 12-47 (97)
296 1qsa_A Protein (soluble lytic 66.5 1.2E+02 0.004 30.9 28.1 126 417-564 220-347 (618)
297 2w2u_A Hypothetical P60 katani 66.0 17 0.00059 25.2 5.8 27 542-568 25-51 (83)
298 1om2_A Protein (mitochondrial 62.5 36 0.0012 24.2 6.9 31 207-237 20-50 (95)
299 2rpa_A Katanin P60 ATPase-cont 62.2 14 0.00048 25.1 4.6 31 115-146 15-45 (78)
300 2v6y_A AAA family ATPase, P60 62.1 22 0.00075 24.6 5.8 27 542-568 17-43 (83)
301 1wy6_A Hypothetical protein ST 61.8 22 0.00074 27.4 5.9 52 505-564 102-153 (172)
302 2npm_A 14-3-3 domain containin 59.9 89 0.003 27.3 24.9 79 510-589 172-252 (260)
303 2w2u_A Hypothetical P60 katani 56.4 46 0.0016 23.0 8.0 30 162-191 24-53 (83)
304 2wvi_A Mitotic checkpoint seri 56.3 56 0.0019 26.1 8.0 79 391-480 45-124 (164)
305 1wy6_A Hypothetical protein ST 55.9 41 0.0014 26.0 6.5 54 461-522 100-153 (172)
306 1wfd_A Hypothetical protein 15 55.1 53 0.0018 23.3 8.0 38 111-149 14-51 (93)
307 4gq2_M Nucleoporin NUP120; bet 54.4 1.8E+02 0.0063 31.4 14.2 72 294-365 843-931 (950)
308 2rpa_A Katanin P60 ATPase-cont 54.3 14 0.00048 25.1 3.5 31 538-568 14-44 (78)
309 3esl_A Checkpoint serine/threo 53.9 96 0.0033 25.8 14.5 81 352-439 58-143 (202)
310 2wvi_A Mitotic checkpoint seri 53.6 69 0.0024 25.6 8.1 83 133-236 43-125 (164)
311 2v6y_A AAA family ATPase, P60 52.0 56 0.0019 22.5 7.8 29 163-191 17-45 (83)
312 2o8p_A 14-3-3 domain containin 50.4 1.2E+02 0.004 25.8 22.6 180 296-482 11-198 (227)
313 3esl_A Checkpoint serine/threo 50.0 1.1E+02 0.0038 25.4 17.1 85 390-480 58-143 (202)
314 4a1g_A Mitotic checkpoint seri 49.8 93 0.0032 24.5 8.6 79 92-185 51-129 (152)
315 3rau_A Tyrosine-protein phosph 49.2 1.7E+02 0.0057 27.3 17.5 60 155-214 115-183 (363)
316 4a5x_A MITD1, MIT domain-conta 47.9 67 0.0023 22.3 9.2 30 539-568 19-48 (86)
317 2cpt_A SKD1 protein, vacuolar 47.6 85 0.0029 23.4 8.8 26 543-568 25-50 (117)
318 3t5v_B Nuclear mRNA export pro 46.5 1.3E+02 0.0046 28.9 10.4 73 160-238 179-252 (455)
319 2vkj_A TM1634; membrane protei 45.0 74 0.0025 22.0 6.7 45 496-546 55-100 (106)
320 2v6x_A Vacuolar protein sortin 44.5 75 0.0026 21.9 8.4 29 540-568 17-45 (85)
321 3ax2_A Mitochondrial import re 44.1 27 0.00091 23.4 3.6 28 210-237 20-47 (73)
322 2v6x_A Vacuolar protein sortin 43.9 77 0.0026 21.9 7.7 35 111-146 12-46 (85)
323 4aez_C MAD3, mitotic spindle c 43.8 1.5E+02 0.0051 25.1 10.3 80 390-480 98-178 (223)
324 3ax2_A Mitochondrial import re 43.2 42 0.0014 22.5 4.4 29 252-280 20-48 (73)
325 1wfd_A Hypothetical protein 15 42.7 87 0.003 22.1 9.1 29 540-568 19-47 (93)
326 4gq2_M Nucleoporin NUP120; bet 42.6 1.7E+02 0.006 31.6 11.8 68 332-399 841-927 (950)
327 2ijq_A Hypothetical protein; s 42.6 39 0.0013 27.0 5.0 74 498-574 36-113 (161)
328 4a5x_A MITD1, MIT domain-conta 41.8 86 0.0029 21.8 8.7 35 207-241 16-50 (86)
329 2wm9_A Dedicator of cytokinesi 40.6 2.5E+02 0.0085 26.8 11.9 31 205-235 9-39 (428)
330 3t5x_A PCI domain-containing p 39.7 79 0.0027 26.4 6.9 61 108-174 10-70 (203)
331 2cwy_A Hypothetical protein TT 39.2 51 0.0017 23.4 4.7 68 499-572 6-75 (94)
332 1om2_A Protein (mitochondrial 38.5 62 0.0021 23.0 4.9 28 253-280 24-51 (95)
333 2wb7_A PT26-6P; extra chromoso 37.0 1.8E+02 0.0061 28.1 9.1 41 511-551 449-489 (526)
334 3t5x_A PCI domain-containing p 36.9 94 0.0032 26.0 6.9 35 247-281 12-46 (203)
335 2vkj_A TM1634; membrane protei 34.6 1.1E+02 0.0039 21.1 6.5 31 156-186 52-82 (106)
336 3c3r_A Programmed cell death 6 33.1 3.1E+02 0.011 25.7 14.3 59 155-213 140-211 (380)
337 2wb7_A PT26-6P; extra chromoso 32.3 2.5E+02 0.0085 27.1 9.3 41 266-306 449-489 (526)
338 2dl1_A Spartin; SPG20, MIT, st 29.3 1.7E+02 0.006 21.6 8.5 34 112-146 22-55 (116)
339 2qx5_A Nucleoporin NIC96; mRNA 29.2 4E+02 0.014 27.2 11.1 25 412-436 537-563 (661)
340 2cwy_A Hypothetical protein TT 28.9 1.5E+02 0.0053 20.9 7.1 66 213-282 7-72 (94)
341 3myv_A SUSD superfamily protei 28.8 72 0.0024 30.9 5.6 34 153-186 186-219 (454)
342 3kez_A Putative sugar binding 26.0 83 0.0028 30.5 5.5 34 153-186 192-225 (461)
343 3mkr_B Coatomer subunit alpha; 26.0 2.8E+02 0.0096 25.1 8.2 55 538-592 104-158 (320)
344 3myv_A SUSD superfamily protei 25.3 99 0.0034 29.9 5.8 34 408-441 187-220 (454)
345 2xze_A STAM-binding protein; h 25.0 97 0.0033 24.2 4.6 32 537-568 41-72 (146)
346 2yin_A DOCK2, dedicator of cyt 25.0 4.6E+02 0.016 25.1 11.7 52 413-464 94-145 (436)
347 3mv2_A Coatomer subunit alpha; 24.7 3.2E+02 0.011 24.8 8.3 52 539-590 117-168 (325)
348 2yin_A DOCK2, dedicator of cyt 24.7 4.7E+02 0.016 25.0 13.6 30 455-484 95-124 (436)
349 2xs1_A Programmed cell death 6 24.5 6E+02 0.021 26.2 14.8 59 155-213 125-196 (704)
350 2wm9_A Dedicator of cytokinesi 24.0 4.7E+02 0.016 24.9 11.9 30 157-186 11-40 (428)
351 3kez_A Putative sugar binding 23.6 1.1E+02 0.0037 29.7 5.8 34 408-441 193-226 (461)
352 2ijq_A Hypothetical protein; s 22.1 3E+02 0.01 21.9 8.2 66 337-402 38-108 (161)
353 3iqc_A FLIS, flagellar protein 22.0 2.7E+02 0.0091 21.2 8.3 48 499-546 41-89 (131)
354 3mcx_A SUSD superfamily protei 20.1 90 0.0031 30.5 4.4 33 154-186 199-231 (477)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-35 Score=293.46 Aligned_cols=365 Identities=19% Similarity=0.172 Sum_probs=318.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCC
Q 006812 117 KIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLG 196 (630)
Q Consensus 117 ~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 196 (630)
.+|..++..| ++++|+..++++++..+ ..+.++..+|.++...|++++|..++++++..
T Consensus 4 ~~a~~~~~~g-~~~~A~~~~~~~~~~~p----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~---------- 62 (388)
T 1w3b_A 4 ELAHREYQAG-DFEAAERHCMQLWRQEP----------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---------- 62 (388)
T ss_dssp THHHHHHHHT-CHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHCC-CHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------
Confidence 4577778888 99999999999887642 33556788999999999999999999999987
Q ss_pred CCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006812 197 GSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKAL 276 (630)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 276 (630)
.|....+++.+|.++...|++++|+..|++++++. |....++..+|.++...|++++|+..|++++
T Consensus 63 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 63 ------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--------PDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34446788999999999999999999999998643 4446789999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 277 EIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG 356 (630)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (630)
++.+ ....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++
T Consensus 129 ~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 129 QYNP--------DLYCVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp HHCT--------TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8643 33466788999999999999999999999886 677788999999999999999999999999
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 357 VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR 436 (630)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 436 (630)
++...+.. ..++..+|.++...|++++|+..+++++.+. |....++..+|.++...|++++|+..|++
T Consensus 195 al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 195 AVTLDPNF----LDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HHHHCTTC----HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99975544 4589999999999999999999999998874 45567889999999999999999999999
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH
Q 006812 437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV 516 (630)
Q Consensus 437 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 516 (630)
++++ .+. ...++..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+..
T Consensus 263 al~~-----~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 263 AIEL-----QPH--FPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp HHHT-----CSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHhh-----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9985 222 2457899999999999999999999999984 355567899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 517 FAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 517 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
|+++++ ..|+...++.++|.+|...|++++|+..|++++++
T Consensus 328 ~~~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 328 YRKALE--------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTT--------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999987 45666789999999999999999999999999864
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.3e-35 Score=288.13 Aligned_cols=360 Identities=18% Similarity=0.158 Sum_probs=315.3
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
+|....++..+|.++...| ++++|+.+++++++.. |..+.++..+|.++...|++++|+..|++++.+
T Consensus 29 ~p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 96 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQN----------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL- 96 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC----------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-
Confidence 3777788899999999999 9999999999998754 345678899999999999999999999999987
Q ss_pred hHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812 188 GRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE 267 (630)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (630)
.|....++..+|.++...|++++|+..|+++++.. |....++..+|.++...|++++
T Consensus 97 ---------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 97 ---------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------PDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHTTSCHHH
T ss_pred ---------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHccCHHH
Confidence 23345678899999999999999999999998643 4446778899999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH
Q 006812 268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKF 347 (630)
Q Consensus 268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 347 (630)
|+..|++++... |....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++
T Consensus 154 A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 154 AKACYLKAIETQ--------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------DPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCH
Confidence 999999999853 334577889999999999999999999999987 677888999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCH
Q 006812 348 EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEF 427 (630)
Q Consensus 348 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 427 (630)
++|+..+++++...+.+ ..++..+|.++...|++++|+..+++++.+. |....++..+|.++...|++
T Consensus 220 ~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNH----AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp THHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCH
Confidence 99999999999976544 4588999999999999999999999998753 34557899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 006812 428 ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL 507 (630)
Q Consensus 428 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 507 (630)
++|+.+|++++++ .+ ....++..+|.++...|++++|+.+++++++ ..|....++..+|.++...
T Consensus 288 ~~A~~~~~~al~~-----~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 288 AEAEDCYNTALRL-----CP--THADSLNNLANIKREQGNIEEAVRLYRKALE--------VFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHHH-----CT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--------SCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh-----Cc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHc
Confidence 9999999999986 22 2346889999999999999999999999987 3566778999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 006812 508 DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS 551 (630)
Q Consensus 508 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 551 (630)
|++++|+..|+++++ .+|+...++.++|.++..+|+
T Consensus 353 g~~~~A~~~~~~a~~--------~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 353 GKLQEALMHYKEAIR--------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCCHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHh--------hCCCCHHHHHhHHHHHHHccC
Confidence 999999999999987 456677899999999988875
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-32 Score=276.30 Aligned_cols=394 Identities=13% Similarity=0.057 Sum_probs=325.7
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG 188 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 188 (630)
...+..++.+|..++..| ++++|+..|++++... + .+.++..+|.++...|++++|+..+++++.+
T Consensus 3 ~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~-----p------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 68 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNK-KYDDAIKYYNWALELK-----E------DPVFYSNLSACYVSVGDLKKVVEMSTKALEL-- 68 (514)
T ss_dssp HHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHC-----C------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred chhHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcC-----c------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--
Confidence 345688999999999999 9999999999999865 1 1567889999999999999999999999987
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc--------------------------
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE-------------------------- 242 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------- 242 (630)
.|....+++.+|.++...|++++|+..|++++...+....
T Consensus 69 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (514)
T 2gw1_A 69 --------------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID 134 (514)
T ss_dssp --------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----
T ss_pred --------------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333567889999999999999999999998754320000
Q ss_pred ---------------------c------------------------chHHHHHHHHHHHHHHHH---hcCHHHHHHHHHH
Q 006812 243 ---------------------E------------------------DSRELGVANRDLAEAFVA---VLNFKEALPFGLK 274 (630)
Q Consensus 243 ---------------------~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~ 274 (630)
+ ..|.....+..+|.++.. .|++++|+.+|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 135 TATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred HHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 0 001225667788888876 8999999999999
Q ss_pred HHHHHhhhc--CCCC----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 006812 275 ALEIHKKGL--GHNS----VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE 348 (630)
Q Consensus 275 al~~~~~~~--~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 348 (630)
+++..+... .+++ +....++..+|.++...|++++|+.++++++.. .|. ..++..+|.++...|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCT
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHH
Confidence 999553332 2222 567888999999999999999999999999886 455 889999999999999999
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812 349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE 428 (630)
Q Consensus 349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 428 (630)
+|+..+++++...+.+ ..++..+|.++...|++++|+.++++++.+. |....++..+|.++...|+++
T Consensus 288 ~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNN----SSVYYHRGQMNFILQNYDQAGKDFDKAKELD--------PENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp TGGGHHHHHHTTCTTC----THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--------SSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHHHHHHhhcCcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------hhhHHHHHHHHHHHHHcCCHH
Confidence 9999999999876554 3488999999999999999999999998764 233468899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--
Q 006812 429 TAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE-- 506 (630)
Q Consensus 429 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 506 (630)
+|+.++++++... +. ...++..+|.++...|++++|+.++++++.+.... +.......++..+|.++..
T Consensus 356 ~A~~~~~~~~~~~-----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 356 DCETLFSEAKRKF-----PE--APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp HHHHHHHHHHHHS-----TT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHc-----cc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhh
Confidence 9999999999862 22 23588999999999999999999999999865432 1111224478899999999
Q ss_pred -cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 507 -LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 507 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
.|++++|+..|++++.+ .|....++..+|.+|...|++++|..+|++++++.
T Consensus 427 ~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp CTTHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 99999999999999985 24445789999999999999999999999999863
No 4
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.7e-31 Score=272.76 Aligned_cols=391 Identities=13% Similarity=0.035 Sum_probs=308.7
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHh
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLG 188 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 188 (630)
...+..++.+|..++..| ++++|+.+|++++...+ ..+.++..+|.+|...|++++|+..|++++.+
T Consensus 22 ~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 88 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDP----------NEPVFYSNISACYISTGDLEKVIEFTTKALEI-- 88 (537)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCC----------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 345688899999999999 99999999999998752 33578899999999999999999999999988
Q ss_pred HhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------Hhcc-
Q 006812 189 RLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL------------------------ILEE- 243 (630)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------------------~~~~- 243 (630)
.|....+++.+|.++...|++++|+..|+ ++..... .+..
T Consensus 89 --------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 153 (537)
T 3fp2_A 89 --------------KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153 (537)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC--
T ss_pred --------------CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 23345678899999999999999999995 4432211 1000
Q ss_pred -----------------------------------chHHHHHHHHHH--------HHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 244 -----------------------------------DSRELGVANRDL--------AEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 244 -----------------------------------~~~~~~~~~~~l--------a~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
..+........+ +......|++++|+..|+++++..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp -----CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred ccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 000000012222 2223334577777777777776544
Q ss_pred hhcCCCCH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 281 KGLGHNSV----EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG 356 (630)
Q Consensus 281 ~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (630)
+++ ..+.++..+|.++...|++++|+.++++++.. .|. ..++..+|.++...|++++|+..+++
T Consensus 234 -----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 234 -----VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred -----CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 233 34667899999999999999999999999887 555 78899999999999999999999999
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 357 VVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR 436 (630)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 436 (630)
++...+.+ ..++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.++++
T Consensus 302 ~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 302 AVDLNPEY----PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------PENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp HHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99876554 4489999999999999999999999998864 33347889999999999999999999999
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc---------
Q 006812 437 TLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL--------- 507 (630)
Q Consensus 437 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 507 (630)
++... +. ...++..+|.++...|++++|+.+|++++++..... ........+..+|.++...
T Consensus 370 ~~~~~-----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 440 (537)
T 3fp2_A 370 TKLKF-----PT--LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE--KIHVGIGPLIGKATILARQSSQDPTQLD 440 (537)
T ss_dssp HHHHC-----TT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS--SCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred HHHhC-----CC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch--hhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 99862 22 245889999999999999999999999999775531 2222333467889999999
Q ss_pred -CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 508 -DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 508 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
|++++|+.+|++++.+ +|+...++..+|.+|...|++++|+.+|++++++.+.
T Consensus 441 ~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 441 EEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999985 3455578999999999999999999999999987654
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-31 Score=274.92 Aligned_cols=395 Identities=13% Similarity=0.060 Sum_probs=309.1
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH------HhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHH
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLD------KDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSK 182 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (630)
+....++..++.+|...| ++++|+..|++...... .....+...+..+.+++.+|.+|...|++++|+..|++
T Consensus 147 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLY-DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GTCHHHHHHHHHHHHHTT-CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHh-hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333456666777777776 77777777664110000 00000001134578899999999999999999999999
Q ss_pred HHHHHhHhhhcCCCCCCccc-------------------------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812 183 ANRMLGRLEEEGLGGSVEDI-------------------------------KPIMHAVHLELANVKTAMGRREEALEHLQ 231 (630)
Q Consensus 183 al~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (630)
++.... ..++. ......++..++..|...|++++|+..|+
T Consensus 226 ~~~~~p---------~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 226 ALMVDA---------KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHCT---------TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHhCc---------hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 988621 11111 00111223334666778899999999998
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHH
Q 006812 232 KCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKAL 311 (630)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (630)
++++. +....++..+|.+|...|++++|+.+|+++++..+. ...++..++.++...|++++|+
T Consensus 297 ~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 297 SINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY--------NLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CCTTHHHHHHHHHHHTCHHHHH
T ss_pred HhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc--------cHHHHHHHHHHHHHhCCHHHHH
Confidence 87643 233678899999999999999999999999975432 2345778899999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHH
Q 006812 312 EQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRC 391 (630)
Q Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 391 (630)
..+++++.. .|....++..+|.+|...|++++|+.+|+++++..+.+ ..++..++.+|...|++++|+..
T Consensus 360 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 360 LISNDLVDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHHHHHHHH------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhh------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Confidence 999988765 56678889999999999999999999999999865443 44889999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhH
Q 006812 392 LEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQA 471 (630)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 471 (630)
|++++... |....++..+|.+|...|++++|+.+|++++++ .+. ...++..+|.++...|++++|
T Consensus 430 ~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 430 YTTAARLF--------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQY--DPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHHHTT--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhC--------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--ChHHHHHHHHHHHHhCCHHHH
Confidence 99988654 334478899999999999999999999999886 222 346789999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC
Q 006812 472 IPYLESAAERLKESFGPKHFGV-GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG 550 (630)
Q Consensus 472 ~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 550 (630)
+.+|++++++.... +..|.. ..++..+|.+|...|++++|+..|++++++. |+...++..+|.+|...|
T Consensus 495 ~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 495 INHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhC
Confidence 99999999976553 234553 7899999999999999999999999999852 444579999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006812 551 SYTLAIEFQQRAIDA 565 (630)
Q Consensus 551 ~~~~A~~~~~~al~~ 565 (630)
++++|.++|++++++
T Consensus 565 ~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 565 IPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999986
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-31 Score=274.70 Aligned_cols=417 Identities=13% Similarity=0.043 Sum_probs=312.8
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL 190 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 190 (630)
....|..++..+...| ++++|+..|++++...+ + . ..+..+|.+|...|++++|+..|++++..
T Consensus 83 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p-----~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 146 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQ-QYKCAAFVGEKVLDITG-----N-----P-NDAFWLAQVYCCTGDYARAKCLLTKEDLY---- 146 (597)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHC-----C-----H-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG----
T ss_pred HHHHHHHHHHHHHHcc-CchHHHHHHHHHHhhCC-----C-----c-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc----
Confidence 4567788999999998 99999999999986542 1 1 35577999999999999999999987643
Q ss_pred hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHhccchHHHHHHHHHHHHHHHHh
Q 006812 191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE--------LILEEDSRELGVANRDLAEAFVAV 262 (630)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~la~~~~~~ 262 (630)
. ....+++.++.+|...|++++|+..|++...... .......+....+++.+|.+|...
T Consensus 147 -~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 147 -N------------RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp -G------------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred -c------------cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 1 1135778899999999999999999985321000 000001134578899999999999
Q ss_pred cCHHHHHHHHHHHHHHHhhhcC----------------------------------------------------------
Q 006812 263 LNFKEALPFGLKALEIHKKGLG---------------------------------------------------------- 284 (630)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~~~---------------------------------------------------------- 284 (630)
|++++|+..|+++++..+....
T Consensus 214 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 9999999999999875432000
Q ss_pred -----CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 285 -----HNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVR 359 (630)
Q Consensus 285 -----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (630)
...+....++..++.+|...|++++|+.+|++++.. .|....++..++.++...|++++|+..+++++.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 000122344555666666666666666666665543 233444556666666666666666666666665
Q ss_pred HhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 360 QTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 360 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
..+. ...++..+|.+|...|++++|..+|++++++. |....++..++.+|...|++++|+.+|++++.
T Consensus 368 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 368 RHPE----KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HCTT----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCcc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3332 25588889999999999999999999998753 34557889999999999999999999999987
Q ss_pred HHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006812 440 LLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF 519 (630)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (630)
.. + ....++..+|.+|...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++
T Consensus 436 ~~-----~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 436 LF-----Q--GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp TT-----T--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hC-----c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 52 1 23468899999999999999999999999874 244556899999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------cCC--CchhHHHHHHHHHHHHHH
Q 006812 520 AKDIMDVSLGPHHADS-IEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-------HGP--SAQDELREARRLLEQLKI 589 (630)
Q Consensus 520 al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~--~~~~~~~~A~~~~~~~~~ 589 (630)
++++.... +.+|+. ..++..+|.+|...|++++|+.+|++++++.+. ++. ...|++++|...|+++.+
T Consensus 501 ~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 501 ALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99976542 124543 679999999999999999999999999876321 000 145788999999999887
Q ss_pred Hh
Q 006812 590 KA 591 (630)
Q Consensus 590 ~~ 591 (630)
..
T Consensus 579 ~~ 580 (597)
T 2xpi_A 579 IS 580 (597)
T ss_dssp HC
T ss_pred cC
Confidence 63
No 7
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.6e-31 Score=268.71 Aligned_cols=390 Identities=14% Similarity=0.078 Sum_probs=265.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
+++..+..+..+|.++...| ++++|+++|++|+++.+...+. ..++..+.++.++|.+|..+|++++|+.++++++.+
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~-~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHAD-QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp C---CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGG-GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44556778889999999999 9999999999999998776332 234667889999999999999999999999999999
Q ss_pred HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH---HHH
Q 006812 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAM--GRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEA---FVA 261 (630)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~ 261 (630)
.+...+.. .+..+.++..+|.++... ++|++|+.+|++++++. ++++ .++..+|.+ +..
T Consensus 124 ~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~~---~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 124 CEKFSSPY--------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKNP---EFTSGLAIASYRLDN 187 (472)
T ss_dssp HHHSCCSS--------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHHHHH
T ss_pred hHhccccc--------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcC
Confidence 87765433 223345677788777665 57999999999999764 3444 455555555 445
Q ss_pred hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 006812 262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIY----SGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA 337 (630)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 337 (630)
.+++++|++.+++++++.+ +. ..++..+|..+ ...|++++|+.++++++.. .|....++.++
T Consensus 188 ~~~~~~al~~~~~al~l~p-----~~---~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~l 253 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLNP-----DN---QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSA 253 (472)
T ss_dssp SCCCCCTHHHHHHHHHHCS-----SC---HHHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcCC-----cc---hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHH
Confidence 6788999999999998744 22 23444555444 4567889999999998886 67778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-------------------ccHHHHHHHHHHHHHH
Q 006812 338 ANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ-------------------EKFADAKRCLEIACGI 398 (630)
Q Consensus 338 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-------------------~~~~~A~~~~~~a~~~ 398 (630)
|.+|...|++++|+..++++++..+.+ +.++..+|.+|... +.+++|...+++++.+
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNN----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 999999999999999999999976654 44778888777543 2345555666655554
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHH-HHHcCChhhHHHHHH
Q 006812 399 LDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWL-LLLTGKVPQAIPYLE 476 (630)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~ 476 (630)
. |....++..+|.+|...|++++|+.+|++++.+ ...+.. ..++..+|.+ +...|++++|+.+|+
T Consensus 330 ~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 330 N--------DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp C--------TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred C--------CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 344466788888899999999999999888874 112111 2345566654 456788889999998
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 006812 477 SAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAI 556 (630)
Q Consensus 477 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 556 (630)
+++.+ .+.... .. +....+...+++++. .+|..+.++.+||.+|...|++++|+
T Consensus 397 kal~i-----~~~~~~---~~----------~~~~~l~~~~~~~l~--------~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 397 EGVKI-----NQKSRE---KE----------KMKDKLQKIAKMRLS--------KNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHS-----CCCCHH---HH----------HHHHHHHHHHHHHHH--------HCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHhc-----CcccHH---HH----------HHHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 88873 222221 11 112233445555554 34666689999999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 006812 557 EFQQRAIDAWESHGP 571 (630)
Q Consensus 557 ~~~~~al~~~~~~~~ 571 (630)
++|++|+++....+.
T Consensus 451 ~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 451 EDSERGLESGSLIPS 465 (472)
T ss_dssp ---------------
T ss_pred HHHHHHHhcCCCCCc
Confidence 999999987655443
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-29 Score=250.79 Aligned_cols=344 Identities=18% Similarity=0.181 Sum_probs=296.2
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.+.++..+|.++...|++++|+.+|++++.+ .+ +.....+.++..+|.++...|++++|+.+++++++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV---------GT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---------Cc---ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4556788999999999999999999999998 11 22334567889999999999999999999999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc---------
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE--------- 306 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------- 306 (630)
+.+.. .+.+..+.++..+|.+|...|++++|+.++++++++.+... +....+.++..+|.+|...|+
T Consensus 76 ~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 151 (406)
T 3sf4_A 76 LARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQD 151 (406)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccch
Confidence 98776 66788899999999999999999999999999999988753 445677899999999999999
Q ss_pred -----------HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHH
Q 006812 307 -----------HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFI 373 (630)
Q Consensus 307 -----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~ 373 (630)
+++|+.++++++.+....+..+....++..+|.++...|++++|+.++++++...+.. ....+.++.
T Consensus 152 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 231 (406)
T 3sf4_A 152 VGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 231 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999999999988888899999999999999999999999999999987664 345577899
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 453 (630)
.+|.++...|++++|+.++++++.+..... +++....++..+|.++...|++++|+.++++++.+...... ......
T Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~ 308 (406)
T 3sf4_A 232 NLGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGR 308 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHH
Confidence 999999999999999999999999987653 45566889999999999999999999999999999887632 222356
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFA 520 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 520 (630)
++..+|.+|...|++++|+.++++++++.... .+.+....++..+|.++...|+...+...+.+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 78999999999999999999999999998776 345677889999999999999875544444333
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.98 E-value=2.9e-29 Score=249.42 Aligned_cols=344 Identities=17% Similarity=0.146 Sum_probs=295.3
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhH
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGR 189 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 189 (630)
..+..++..|..+...| ++++|+.+|++++++. ++. ....+.++..+|.++...|++++|+.++++++.+...
T Consensus 7 ~~~~~l~~~g~~~~~~g-~~~~A~~~~~~al~~~-----~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 7 ASCLELALEGERLCKSG-DCRAGVSFFEAAVQVG-----TED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-----CSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcC-----ccc-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 34567889999999999 9999999999999874 221 2345778999999999999999999999999999776
Q ss_pred hhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC-----
Q 006812 190 LEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN----- 264 (630)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----- 264 (630)
..+ .+....++..+|.++...|++++|+.++++++++.+.. .+.+..+.++..+|.+|...|+
T Consensus 80 ~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~ 147 (406)
T 3sf4_A 80 IGD----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCP 147 (406)
T ss_dssp TTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred ccc----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCccccc
Confidence 532 34667889999999999999999999999999999876 5667778899999999999999
Q ss_pred ---------------HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812 265 ---------------FKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329 (630)
Q Consensus 265 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 329 (630)
+++|+.++++++.+.... .+.+..+.++.++|.++...|++++|+.++++++.+....+..+.
T Consensus 148 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (406)
T 3sf4_A 148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 225 (406)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 999999999999998875 245677889999999999999999999999999999998887788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP 407 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 407 (630)
...++..+|.+|...|++++|+.++++++...+.. ....+.++..+|.++...|++++|..++++++.+..... ++
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~ 303 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DR 303 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--Cc
Confidence 88899999999999999999999999999887654 344577899999999999999999999999999987654 45
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLES 477 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (630)
+....++..+|.+|...|++++|+.++++++++.+... .......++..+|.++...|+...+...+.+
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 372 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG-DKSGELTARLNLSDLQMVLGLSYSTNNSIMS 372 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 67788999999999999999999999999999988873 2333467889999999999988654444433
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=1.4e-29 Score=255.51 Aligned_cols=385 Identities=16% Similarity=0.107 Sum_probs=295.8
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
.+|.....++.+|..++..| ++++|+.+|++++... |..+.++..+|.++...|++++|+..|++++.+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAG-QLADALSQFHAAVDGD----------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC----------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 45888899999999999999 9999999999998763 233678899999999999999999999999988
Q ss_pred HhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchH---HH---------HHHHHH
Q 006812 187 LGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSR---EL---------GVANRD 254 (630)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~---------~~~~~~ 254 (630)
.|....++..+|.+|...|++++|+..|++++++. ++.+ .. ...+..
T Consensus 90 ----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 90 ----------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHHHHHH
Confidence 23335778899999999999999999999998542 2222 11 122455
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 006812 255 LAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAE 334 (630)
Q Consensus 255 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 334 (630)
+|.++...|++++|+.+|+++++..+ ....++..+|.+|...|++++|+.+|++++.. .|....++
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~ 214 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVCV--------WDAELRELRAECFIKEGEPRKAISDLKAASKL------KNDNTEAF 214 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH------HCSCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHH
Confidence 68889999999999999999998643 23467889999999999999999999999886 45567889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH--------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETR--------ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
..+|.+|...|++++|+..+++++...+...... ......+|.++...|++++|+.++++++.+... +
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----~ 290 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS----I 290 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS----S
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----c
Confidence 9999999999999999999999998766543321 112244599999999999999999999886421 2
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF 486 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (630)
+......+..+|.++...|++++|+.++++++.+ .+. ...++..+|.++...|++++|+.+|+++++
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------ 357 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-----EPD--NVNALKDRAEAYLIEEMYDEAIQDYETAQE------ 357 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Ccc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------
Confidence 2334678999999999999999999999999986 222 346889999999999999999999999998
Q ss_pred CCCCccHHHHHHHHHHH------------HHHcC-----ChhHHHHHHHH-HHHHHHHhcCCCC--HHHHHHHHHHHHHH
Q 006812 487 GPKHFGVGYIYNNLGAA------------YLELD-----RPQSAAQVFAF-AKDIMDVSLGPHH--ADSIEACQNLSKAY 546 (630)
Q Consensus 487 ~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-al~~~~~~~~~~~--~~~~~~~~~la~~~ 546 (630)
..|....++..++.+ |...| +.+++...|++ ++........... ......+..++.+|
T Consensus 358 --~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay 435 (450)
T 2y4t_A 358 --HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435 (450)
T ss_dssp --TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred --hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 245556677778744 44455 55677788876 5542221111000 11224555566666
Q ss_pred HhcCCHHHHH
Q 006812 547 SSMGSYTLAI 556 (630)
Q Consensus 547 ~~~g~~~~A~ 556 (630)
..+|+.+++.
T Consensus 436 ~~L~d~~~r~ 445 (450)
T 2y4t_A 436 EVLSDPEMRK 445 (450)
T ss_dssp HHSSGGGGC-
T ss_pred HHhCCHHHHH
Confidence 6666655443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=2.7e-29 Score=253.27 Aligned_cols=376 Identities=15% Similarity=0.081 Sum_probs=297.0
Q ss_pred hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233 (630)
Q Consensus 154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (630)
|..+..+..+|..+...|++++|+..|++++.. .|....+++.+|.++...|++++|+..|+++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 567888999999999999999999999999987 2233577889999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH---HH---------HHHHHHHHHHH
Q 006812 234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV---EV---------AHDRRLLGVIY 301 (630)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~---------~~~~~~la~~~ 301 (630)
++.. |....++..+|.+|...|++++|+.+|+++++..+ +.+ .. ...+..+|.++
T Consensus 87 l~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 87 IQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-----SENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp HHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8653 33367899999999999999999999999987432 222 11 11244558889
Q ss_pred hccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh
Q 006812 302 SGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN 381 (630)
Q Consensus 302 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 381 (630)
...|++++|+.+|++++.. .|....++..+|.+|...|++++|+..+++++...+.+ ..++..+|.++..
T Consensus 154 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN----TEAFYKISTLYYQ 223 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC----HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Confidence 9999999999999999886 56678889999999999999999999999999876544 4589999999999
Q ss_pred hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-
Q 006812 382 QEKFADAKRCLEIACGILDKKETISPEEVADA---------YSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE- 451 (630)
Q Consensus 382 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 451 (630)
.|++++|+.++++++.+.. +.+..... ...+|.++...|++++|+.+|++++.+ .+..+.
T Consensus 224 ~g~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~ 293 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQ-----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEY 293 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHH
Confidence 9999999999999987642 11222222 234499999999999999999999986 233333
Q ss_pred -hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812 452 -GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530 (630)
Q Consensus 452 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 530 (630)
...+..+|.++...|++++|+.++++++++ .|....++..+|.++...|++++|+..|++++++
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 358 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH------- 358 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 457899999999999999999999999984 3556678999999999999999999999999983
Q ss_pred CCHHHHHHHHHHHH------------HHHhcC-----CHHHHHHHHHH-HHHHHHHcCCCchhHHHHHHHHHHHHHHHhc
Q 006812 531 HHADSIEACQNLSK------------AYSSMG-----SYTLAIEFQQR-AIDAWESHGPSAQDELREARRLLEQLKIKAS 592 (630)
Q Consensus 531 ~~~~~~~~~~~la~------------~~~~~g-----~~~~A~~~~~~-al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 592 (630)
.|+...++..++. .|...| +.+++.+.|++ +++..+...+. ......|...|..+.+...
T Consensus 359 -~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~-~~~~~~a~~~~~~i~~ay~ 436 (450)
T 2y4t_A 359 -NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN-EEEKKKAEKKFIDIAAAKE 436 (450)
T ss_dssp -SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHHH
Confidence 3444567777774 455556 56677888876 54433332221 2224567777777766655
Q ss_pred CCC
Q 006812 593 GAS 595 (630)
Q Consensus 593 ~~~ 595 (630)
.+.
T Consensus 437 ~L~ 439 (450)
T 2y4t_A 437 VLS 439 (450)
T ss_dssp HSS
T ss_pred HhC
Confidence 553
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-28 Score=252.02 Aligned_cols=365 Identities=14% Similarity=0.079 Sum_probs=298.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
..++..+|.++...| ++++|+..++++++.. |....++..+|.++...|++++|+..|++++.......
T Consensus 39 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 107 (514)
T 2gw1_A 39 PVFYSNLSACYVSVG-DLKKVVEMSTKALELK----------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND 107 (514)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred HHHHHhHHHHHHHHh-hHHHHHHHHHHHhccC----------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence 678999999999999 9999999999999864 23457788999999999999999999999876532000
Q ss_pred h-------------------------------------------cCCCCCCccc--------------------hhhHHH
Q 006812 192 E-------------------------------------------EGLGGSVEDI--------------------KPIMHA 208 (630)
Q Consensus 192 ~-------------------------------------------~~~~~~~~~~--------------------~~~~~~ 208 (630)
. ....+..+.. .+....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (514)
T 2gw1_A 108 ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187 (514)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHH
Confidence 0 0000000000 012256
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHh--ccc----hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812 209 VHLELANVKTA---MGRREEALEHLQKCLEIKELIL--EED----SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279 (630)
Q Consensus 209 ~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (630)
.++.+|.++.. .|++++|+..|+++++..+... .++ .|....++..+|.++...|++++|+.++++++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 67778888876 8999999999999998554433 122 26678899999999999999999999999999853
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 280 KKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVR 359 (630)
Q Consensus 280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (630)
+ . ..++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++.
T Consensus 268 ~--------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 268 P--------R-VNSYIYMALIMADRNDSTEYYNYFDKALKL------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp C--------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred c--------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 2 677889999999999999999999998775 566677899999999999999999999999999
Q ss_pred HhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 360 QTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 360 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
..+.+. .++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++.
T Consensus 333 ~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 333 LDPENI----FPYIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp TCSSCS----HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hChhhH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 766543 388999999999999999999999998764 23347889999999999999999999999999
Q ss_pred HHHhCCCCCCchhHHHHHHHHHHHH---cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH
Q 006812 440 LLEKLPQAQHSEGSVSARIGWLLLL---TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV 516 (630)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 516 (630)
+.+.... ......++..+|.++.. .|++++|+.++++++.+ .|....++..+|.++...|++++|..+
T Consensus 401 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 401 LENKLDG-IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHTSSS-CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhccch-HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8765522 11124588999999999 99999999999999984 355567889999999999999999999
Q ss_pred HHHHHHH
Q 006812 517 FAFAKDI 523 (630)
Q Consensus 517 ~~~al~~ 523 (630)
|++++++
T Consensus 472 ~~~a~~~ 478 (514)
T 2gw1_A 472 FEESADL 478 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=5e-28 Score=236.18 Aligned_cols=329 Identities=15% Similarity=0.050 Sum_probs=268.7
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
+..+..+|.++...|++++|+..|++++.. .|....+++.+|.++...|++++|+..|++++++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999987 2233467889999999999999999999999865
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH------------HHHHHhcc
Q 006812 237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRL------------LGVIYSGL 304 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------la~~~~~~ 304 (630)
. |....++..+|.++...|++++|+..|++++.+.+. .......+.. +|.++...
T Consensus 67 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 67 K--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-----EQEEKEAESQLVKADEMQRLRSQALDAFDG 133 (359)
T ss_dssp C--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C--------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCc-----ccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 333578999999999999999999999999875330 0022333333 48999999
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812 305 EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK 384 (630)
Q Consensus 305 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 384 (630)
|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++...+.+ ..++..+|.++...|+
T Consensus 134 ~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 134 ADYTAAITFLDKILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN----TEAFYKISTLYYQLGD 203 (359)
T ss_dssp TCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC----HHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence 9999999999999886 56677899999999999999999999999999865544 4589999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch--hH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVAD---------AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE--GS 453 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~ 453 (630)
+++|...++++++.... .+.... ....+|.++...|++++|+..+++++... +..+. ..
T Consensus 204 ~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~ 273 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQD-----HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVR 273 (359)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHH
T ss_pred HHHHHHHHHHHHhhCcc-----chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHH
Confidence 99999999999876432 122211 23456899999999999999999999862 23332 24
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+|++++++ +|
T Consensus 274 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p 337 (359)
T 3ieg_A 274 SKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NE 337 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CC
Confidence 5678999999999999999999999984 3555679999999999999999999999999983 45
Q ss_pred HHHHHHHHHHHHHHhcC
Q 006812 534 DSIEACQNLSKAYSSMG 550 (630)
Q Consensus 534 ~~~~~~~~la~~~~~~g 550 (630)
+...+...++.++...+
T Consensus 338 ~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 338 NDQQIREGLEKAQRLLK 354 (359)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 55567777777766544
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=6.5e-28 Score=249.21 Aligned_cols=364 Identities=15% Similarity=0.096 Sum_probs=283.6
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
+|....++..+|.++...| ++++|+..|++++.+.+ ....++..+|.++...|++++|+..|+ ++.+.
T Consensus 55 ~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~ 122 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKP----------DHSKALLRRASANESLGNFTDAMFDLS-VLSLN 122 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--
T ss_pred CCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC----------chHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC
Confidence 3667789999999999999 99999999999998652 345678899999999999999999995 44321
Q ss_pred ------------------------hHhhhcC---CCCCC-------------------------ccchhhHHHHHHHHHH
Q 006812 188 ------------------------GRLEEEG---LGGSV-------------------------EDIKPIMHAVHLELAN 215 (630)
Q Consensus 188 ------------------------~~~~~~~---~~~~~-------------------------~~~~~~~~~~~~~l~~ 215 (630)
+...... ..... .+..+........++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (537)
T 3fp2_A 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHH
Confidence 1111100 00000 0000111112222222
Q ss_pred --------HHHHcCCHHHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812 216 --------VKTAMGRREEALEHLQKCLEIKELILEEDSR----ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL 283 (630)
Q Consensus 216 --------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (630)
.....|++++|+..|+++++.. ++++ ..+.++..+|.++...|++++|+.++++++...+
T Consensus 203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--- 274 (537)
T 3fp2_A 203 LYSATDEGYLVANDLLTKSTDMYHSLLSAN-----TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--- 274 (537)
T ss_dssp HHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-----CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC---
Confidence 2233346666776666666433 2222 3467899999999999999999999999998632
Q ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
. ..++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++...+.
T Consensus 275 -----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 275 -----T-PNSYIFLALTLADKENSQEFFKFFQKAVDL------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp -----C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----C-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 2 467889999999999999999999999887 5667888999999999999999999999999997665
Q ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
+. .++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.+|++++.+.+.
T Consensus 343 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 343 NV----YPYIQLACLLYKQGKFTESEAFFNETKLKF--------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp CS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 54 478999999999999999999999998874 344578899999999999999999999999999876
Q ss_pred CCCCCCchhHHHHHHHHHHHHc----------CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHH
Q 006812 444 LPQAQHSEGSVSARIGWLLLLT----------GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSA 513 (630)
Q Consensus 444 ~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 513 (630)
... .......+..+|.++... |++++|+.+|+++++. +|....++..+|.+|...|++++|
T Consensus 411 ~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 411 QEK-IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp CSS-CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred chh-hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHH
Confidence 633 222344568889999999 9999999999999984 355567899999999999999999
Q ss_pred HHHHHHHHHHH
Q 006812 514 AQVFAFAKDIM 524 (630)
Q Consensus 514 ~~~~~~al~~~ 524 (630)
+.+|++++++.
T Consensus 482 ~~~~~~al~~~ 492 (537)
T 3fp2_A 482 IELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999964
No 15
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.97 E-value=8.1e-28 Score=239.33 Aligned_cols=314 Identities=13% Similarity=0.138 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812 246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG 325 (630)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 325 (630)
+..+..+..+|..+...|++++|+.+|++++++.+ .+....+.++..+|.+|...|++++|+.++++++.+.+..+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc----cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 45567788999999999999999999999999733 13334567899999999999999999999999999999988
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhcc-----------------HH
Q 006812 326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEK-----------------FA 386 (630)
Q Consensus 326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~-----------------~~ 386 (630)
+.+....++..+|.+|...|++++|+.++++++...... .+..+.++..+|.+|...|+ ++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 889999999999999999999999999999999876543 45567899999999999999 99
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC
Q 006812 387 DAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG 466 (630)
Q Consensus 387 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 466 (630)
+|+.++++++.+..... +++....++..+|.++...|++++|+.++++++.+..... .......++..+|.+|...|
T Consensus 201 ~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG-DRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHCc
Confidence 99999999999887653 4567888999999999999999999999999999987753 22223557899999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY 546 (630)
Q Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 546 (630)
++++|+.++++++.+.... .+......++..+|.++...|++++|+.++++++.+..... +.+....++..+|.+|
T Consensus 278 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARACWSLGNAH 353 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHH
Confidence 9999999999999988765 34556678899999999999999999999999999987652 3466678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHcC
Q 006812 547 SSMGSYTLAIEFQQRAIDAWESHG 570 (630)
Q Consensus 547 ~~~g~~~~A~~~~~~al~~~~~~~ 570 (630)
...|++++|..+|++++++++..+
T Consensus 354 ~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999876654
No 16
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.97 E-value=1.8e-27 Score=236.83 Aligned_cols=312 Identities=17% Similarity=0.185 Sum_probs=274.1
Q ss_pred hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233 (630)
Q Consensus 154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (630)
+..+..+..+|..+...|++++|+.+|++++.+ .+ +.....+.+++.+|.+|...|++++|+.+|+++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA---------GT---EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CC---SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---------cc---cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456677888999999999999999999999997 11 223345678899999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc-------
Q 006812 234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE------- 306 (630)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------- 306 (630)
+++.+.. .+.+....++..+|.+|...|++++|+.++++++++.+... +.+....++..+|.+|...|+
T Consensus 113 l~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 113 LTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNP 188 (411)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccc
Confidence 9998776 66788899999999999999999999999999999988753 456788899999999999999
Q ss_pred ----------HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Q 006812 307 ----------HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFIS 374 (630)
Q Consensus 307 ----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~ 374 (630)
+++|+.++++++.+....+..+....++..+|.+|...|++++|+.++++++...+.. ......++..
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN 268 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999998888888889999999999999999999999999999987653 3445678999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV 454 (630)
Q Consensus 375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 454 (630)
+|.++...|++++|+.++++++.+..... +......++..+|.++...|++++|+.++++++.+...... ......+
T Consensus 269 la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 345 (411)
T 4a1s_A 269 LGNSHIFLGQFEDAAEHYKRTLALAVELG--EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-RIGEARA 345 (411)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hHHHHHH
Confidence 99999999999999999999999987653 44566889999999999999999999999999999887632 2223567
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812 455 SARIGWLLLLTGKVPQAIPYLESAAERLKE 484 (630)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 484 (630)
+..+|.+|...|++++|..++++++++..+
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999997543
No 17
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.97 E-value=3.8e-27 Score=227.71 Aligned_cols=311 Identities=16% Similarity=0.174 Sum_probs=267.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCCh
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS 328 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 328 (630)
...+...|..+...|++++|+.+|+++++..+ .+......++..+|.++...|++++|+.++++++.+....++.+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 45677889999999999999999999999733 23334578899999999999999999999999999999888888
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhcc--------------------HH
Q 006812 329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEK--------------------FA 386 (630)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~--------------------~~ 386 (630)
....++..+|.++...|++++|+..+++++...+.. ....+.++..+|.++...|+ ++
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 889999999999999999999999999999987654 34557789999999999999 99
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC
Q 006812 387 DAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG 466 (630)
Q Consensus 387 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 466 (630)
+|..++++++.+..... +.+....++..+|.++...|++++|+.++++++.+.+... .......++..+|.++...|
T Consensus 161 ~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcC
Confidence 99999999999887654 4567788999999999999999999999999999987753 22223567899999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY 546 (630)
Q Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 546 (630)
++++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++.+..... +.+....++..+|.+|
T Consensus 238 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAY 313 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence 9999999999999988765 34566678899999999999999999999999999887653 3456678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHcC
Q 006812 547 SSMGSYTLAIEFQQRAIDAWESHG 570 (630)
Q Consensus 547 ~~~g~~~~A~~~~~~al~~~~~~~ 570 (630)
...|++++|..++++++++.+..|
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC-----
T ss_pred HHcCChHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999887665
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.7e-28 Score=247.56 Aligned_cols=347 Identities=14% Similarity=0.022 Sum_probs=259.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
+.+.++..+++.+...... .+ +...+..++.+|.++..+|++++|+++|++|+++.+...... ..+...
T Consensus 26 ~~~~~l~~~e~~~~~~~~~--~~--~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~-------~~~~~~ 94 (472)
T 4g1t_A 26 EGENSLDDFEDKVFYRTEF--QN--REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ-------AEIRSL 94 (472)
T ss_dssp TTCCCHHHHHHHHHHHTTS--CC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG-------CTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHh--CC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc-------cchHHH
Confidence 6677788887776655433 22 234567889999999999999999999999999987764432 134556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhhcCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV--LNFKEALPFGLKALEIHKKGLGH 285 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~ 285 (630)
.++.++|.+|..+|++++|+.++++++++.+...+..++..+.++..+|.++... ++|++|+.+|++++++.+
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p----- 169 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP----- 169 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-----
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-----
Confidence 7889999999999999999999999999998876666666778888888877665 479999999999998754
Q ss_pred CCHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHH
Q 006812 286 NSVEVAHDRRLLGVI---YSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI----ALGKFEEAINTLKGVV 358 (630)
Q Consensus 286 ~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l 358 (630)
+++. ++..++.+ +...++.++|++.+++++++ +|....++..+|..+. ..|++++|+.++++++
T Consensus 170 ~~~~---~~~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al 240 (472)
T 4g1t_A 170 KNPE---FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240 (472)
T ss_dssp TCHH---HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred CCHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4444 34445555 44567788999999999987 5666677777776554 4567889999999999
Q ss_pred HHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc--------------
Q 006812 359 RQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM-------------- 424 (630)
Q Consensus 359 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------- 424 (630)
...+.. ..++..+|.+|...|++++|+..+++++++. |..+.++..+|.+|...
T Consensus 241 ~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 241 EKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYI--------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 865544 4488999999999999999999999998875 55667888888887653
Q ss_pred -----CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812 425 -----NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN 499 (630)
Q Consensus 425 -----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 499 (630)
+.+++|+..+++++.+. +....++..+|.++...|++++|+.+|++++++ .+++.....++..
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEAN-------DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLR 376 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhhcC-------CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHH
Confidence 23456666666666541 222346788899999999999999999998873 2232333345566
Q ss_pred HHHH-HHHcCChhHHHHHHHHHHHH
Q 006812 500 LGAA-YLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 500 l~~~-~~~~g~~~~A~~~~~~al~~ 523 (630)
+|.+ +...|++++|+.+|++++.+
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6654 45678899999999998875
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=3.2e-27 Score=230.43 Aligned_cols=332 Identities=17% Similarity=0.119 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
...++.+|..++..| ++++|+..|+++++..+ ....++..+|.++...|++++|+..+++++.+
T Consensus 3 ~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAG-QLADALSQFHAAVDGDP----------DNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----- 66 (359)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCc----------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 467889999999999 99999999999998642 23568889999999999999999999999988
Q ss_pred hcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHH------------HHHHHH
Q 006812 192 EEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANR------------DLAEAF 259 (630)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------------~la~~~ 259 (630)
.|....++..+|.++...|++++|+..|++++++.+ .......++. .+|.++
T Consensus 67 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 67 -----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-----SEQEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----cccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223346788999999999999999999999985432 0002233333 348999
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812 260 VAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN 339 (630)
Q Consensus 260 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 339 (630)
...|++++|+.+++++++..+ ....++..+|.++...|++++|+..+++++.. .|....++..+|.
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~ 196 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCV--------WDAELRELRAECFIKEGEPRKAISDLKAASKL------KSDNTEAFYKIST 196 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CSCCHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Confidence 999999999999999998643 23467889999999999999999999998875 5667789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhhcchHH--------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHH
Q 006812 340 MQIALGKFEEAINTLKGVVRQTEKESETR--------ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVA 411 (630)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 411 (630)
++...|++++|+..++++++..+...... ......+|.++...|++++|+..+++++..... ++....
T Consensus 197 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~ 272 (359)
T 3ieg_A 197 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS----VAEYTV 272 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----SHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----chHHHH
Confidence 99999999999999999999876654421 112345689999999999999999999886532 233445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (630)
..+..+|.++...|++++|+.++++++++ .+. ...++..+|.++...|++++|+.+|++++++ .|
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p 337 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQM-----EPD--NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NE 337 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CC
Confidence 67888999999999999999999999986 222 3468899999999999999999999999983 35
Q ss_pred cHHHHHHHHHHHHHHcC
Q 006812 492 GVGYIYNNLGAAYLELD 508 (630)
Q Consensus 492 ~~~~~~~~l~~~~~~~g 508 (630)
....+...++.++...+
T Consensus 338 ~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 338 NDQQIREGLEKAQRLLK 354 (359)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 55556667777665443
No 20
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.97 E-value=1e-26 Score=224.63 Aligned_cols=309 Identities=19% Similarity=0.209 Sum_probs=268.9
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
...+...|..+...|++++|+.+|++++.. .+ +.......++..+|.++...|++++|+.++++++++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQV---------GT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---------Cc---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 446678999999999999999999999997 11 223445678899999999999999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc----------
Q 006812 237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE---------- 306 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------- 306 (630)
.+.. .+.+..+.++..+|.+|...|++++|+.++++++++.+... +.+....++..+|.++...|+
T Consensus 73 ~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 73 ARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred hhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence 8876 66778899999999999999999999999999999988642 445667889999999999999
Q ss_pred ----------HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Q 006812 307 ----------HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFIS 374 (630)
Q Consensus 307 ----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~ 374 (630)
+++|+.++++++.+....+..+....++..+|.++...|++++|+.++++++...+.. ....+.++..
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999999998888878889999999999999999999999999999887653 3445778999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV 454 (630)
Q Consensus 375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 454 (630)
+|.++...|++++|..++++++.+..... +++....++..+|.++...|++++|+.++++++.+...... ......+
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~ 305 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRA 305 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-cHHHHHH
Confidence 99999999999999999999999887653 45567889999999999999999999999999999877632 2223567
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812 455 SARIGWLLLLTGKVPQAIPYLESAAERLKE 484 (630)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 484 (630)
+..+|.++...|++++|..++++++++..+
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999986543
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=4.4e-26 Score=231.51 Aligned_cols=378 Identities=16% Similarity=0.138 Sum_probs=309.3
Q ss_pred hHHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhh----ccChHHHHHHHH
Q 006812 110 ELGLVGLKIALKLDQ----EGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYS----FKRFSDSLGYLS 181 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~ 181 (630)
..+.+++.+|..|.. .+ ++++|+.+|+++.+. ..+.+++.+|.+|.. .+++++|+.+|+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQ------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 345778889999888 67 999999999999753 124577889999999 999999999999
Q ss_pred HHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 006812 182 KANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTA----MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAE 257 (630)
Q Consensus 182 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 257 (630)
++.+. ....+++.+|.+|.. .+++++|+.+|+++.+. . ...++..+|.
T Consensus 104 ~a~~~------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~ 155 (490)
T 2xm6_A 104 KAALK------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------G---RDSGQQSMGD 155 (490)
T ss_dssp HHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHH
T ss_pred HHHHC------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHH
Confidence 99764 113567789999999 89999999999998742 1 2577899999
Q ss_pred HHHH----hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHcCCChh
Q 006812 258 AFVA----VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG----LEEHQKALEQNELSQKVLKTWGLSSE 329 (630)
Q Consensus 258 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~ 329 (630)
+|.. .+++++|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|+++.+. .
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~ 217 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------G 217 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------C
Confidence 9998 88999999999999863 12 4678899999998 89999999999998763 2
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHh
Q 006812 330 LLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN----QEKFADAKRCLEIACGILDK 401 (630)
Q Consensus 330 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~ 401 (630)
...++..+|.+|.. .+++++|+.+|+++++.. . ..++..+|.+|.. .+++++|+.+|+++.+.
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--- 288 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--- 288 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---
Confidence 35688899999997 899999999999998742 1 3488899999998 89999999999998653
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC---ChhhHHH
Q 006812 402 KETISPEEVADAYSEISMQYESM-----NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG---KVPQAIP 473 (630)
Q Consensus 402 ~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~ 473 (630)
....++..+|.+|... +++++|+.+|+++.+. + ...++.++|.+|...| ++++|+.
T Consensus 289 -------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~----~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 289 -------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----G----DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp -------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----C----CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 1235788999999998 9999999999999873 1 2357899999999877 8999999
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-
Q 006812 474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS- 548 (630)
Q Consensus 474 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~- 548 (630)
+|+++++. ....+++++|.+|.. .+++++|+.+|+++.+. .+ ..++.+||.+|..
T Consensus 353 ~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~---~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 353 WFRKAAAK----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-------GL---SAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHT
T ss_pred HHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcC
Confidence 99999872 235689999999999 89999999999999872 23 3689999999999
Q ss_pred ---cCCHHHHHHHHHHHHHHH-----HH-----cCCCchhHHHHHHHHHHHHHHHh
Q 006812 549 ---MGSYTLAIEFQQRAIDAW-----ES-----HGPSAQDELREARRLLEQLKIKA 591 (630)
Q Consensus 549 ---~g~~~~A~~~~~~al~~~-----~~-----~~~~~~~~~~~A~~~~~~~~~~~ 591 (630)
.+++++|..+|+++++.. .. ++.-.......+.....+..++.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 899999999999999876 11 34334455566665555554443
No 22
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.96 E-value=3.6e-25 Score=217.44 Aligned_cols=344 Identities=11% Similarity=0.020 Sum_probs=267.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHhcCHHHHH-----------HHHHHHHHH
Q 006812 211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDL-AEAFVAVLNFKEAL-----------PFGLKALEI 278 (630)
Q Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~-----------~~~~~al~~ 278 (630)
.+-...+...+++++|...++++.+..... ..++.....+..+ .......++++.+. ..+++.-..
T Consensus 16 l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~ 93 (383)
T 3ulq_A 16 INEWYMYIRRFSIPDAEYLRREIKQELDQM--EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK 93 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc
Confidence 344556778999999999999976655433 2333333222222 22233344455554 555543221
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 279 HKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVV 358 (630)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 358 (630)
.... +.......++.+|.++...|++++|+.++++++.+.+..++.+....++..+|.+|...|++++|+.++++++
T Consensus 94 ~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 94 QARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp THHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1110 1111223456689999999999999999999999988887778889999999999999999999999999999
Q ss_pred HHhhhc---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812 359 RQTEKE---SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLK 435 (630)
Q Consensus 359 ~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 435 (630)
+..+.. .+..+.++..+|.+|...|++++|+.++++++.+..... +++..+.++.++|.+|...|++++|+.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 988765 345678999999999999999999999999999987663 567788899999999999999999999999
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHH
Q 006812 436 RTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQ 515 (630)
Q Consensus 436 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 515 (630)
+++.+.+.... .+....++.++|.++...|++++|+.++++++++.... .++.....+..+|.+|...|++ .
T Consensus 249 ~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~----~ 320 (383)
T 3ulq_A 249 RAIAVFEESNI-LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDE----E 320 (383)
T ss_dssp HHHHHHHHTTC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCH----H
T ss_pred HHHHHHHhhcc-chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH----H
Confidence 99999887643 12336788999999999999999999999999988776 3455555578899999999995 3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812 516 VFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP 571 (630)
Q Consensus 516 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 571 (630)
.+++++.+.++. ...+....++..+|.+|...|++++|..+|++++++.+.+..
T Consensus 321 ~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 321 AIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 444555544443 356777889999999999999999999999999999887544
No 23
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.95 E-value=1e-24 Score=214.22 Aligned_cols=345 Identities=14% Similarity=0.036 Sum_probs=264.5
Q ss_pred HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHH--HHHHHHcCCHHHHH---------
Q 006812 159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLEL--ANVKTAMGRREEAL--------- 227 (630)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~--------- 227 (630)
...+-...+...+++++|...++++......+..+ +... .++.+ .......++++.+.
T Consensus 14 ~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~----------~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~ 82 (383)
T 3ulq_A 14 EKINEWYMYIRRFSIPDAEYLRREIKQELDQMEED----------QDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPR 82 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCC----------HHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccc----------hHHH-HHHHHHHHHHHHHHhhcCcccccccccccc
Confidence 33444556678999999999999987765443211 1111 22222 22222334444443
Q ss_pred --HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc
Q 006812 228 --EHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE 305 (630)
Q Consensus 228 --~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (630)
+.+++.-..... .+.......++.+|.++...|++++|+.+|++++.+.... ++.+..+.++..+|.+|...|
T Consensus 83 ~~~~~~~i~~~~~~---~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~ 157 (383)
T 3ulq_A 83 LSDLLLEIDKKQAR---LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMK 157 (383)
T ss_dssp HHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHhcCCC---chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcC
Confidence 444432211100 0111123355669999999999999999999999987754 245568899999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhh
Q 006812 306 EHQKALEQNELSQKVLKTWGL-SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQ 382 (630)
Q Consensus 306 ~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~ 382 (630)
++++|+.++++++++....+. .+....++.++|.+|...|++++|+.++++++...+.. .+..+.++.++|.+|...
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 999999999999999999887 57888999999999999999999999999999987654 455677999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 006812 383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL 462 (630)
Q Consensus 383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 462 (630)
|++++|+.++++++.+..... +.+..+.++.++|.+|...|++++|..++++++.+.+...++ .....+..+|.++
T Consensus 238 g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV--IYLSEFEFLKSLY 313 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 999999999999999987654 325678999999999999999999999999999998876331 1223367799999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812 463 LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG 529 (630)
Q Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 529 (630)
...|++ ..+++++...++. ...+....++..+|.+|...|++++|..+|++++.+.++...
T Consensus 314 ~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 314 LSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp TSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred hCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999995 4555555555554 456778889999999999999999999999999999877654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=3.6e-27 Score=230.91 Aligned_cols=310 Identities=15% Similarity=0.097 Sum_probs=245.9
Q ss_pred HHHHcCCHHHHHH-HHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812 216 VKTAMGRREEALE-HLQKCLEIKELILEEDSRE-LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD 293 (630)
Q Consensus 216 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (630)
++...|+|++|+. .|++++.+. ++.|. ....+..+|.++...|++++|+.+|+++++.. |....+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~ 100 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--------PKHMEA 100 (368)
T ss_dssp ------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------TTCHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHH
Confidence 6677899999999 998887542 33332 24568899999999999999999999999743 334567
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH-----
Q 006812 294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR----- 368 (630)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~----- 368 (630)
+..+|.++...|++++|+.++++++.+ .|....++..+|.++...|++++|+..+++++...+......
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLEL------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 889999999999999999999999987 566788999999999999999999999999999776544321
Q ss_pred -------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 369 -------ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE--VADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 369 -------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
...+..++.++ ..|++++|+.++++++... |. ...++..+|.++...|++++|+.++++++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD--------PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHS--------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11122466666 8999999999999998865 23 467889999999999999999999999998
Q ss_pred HHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006812 440 LLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF 519 (630)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (630)
+ .+. ...++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++
T Consensus 246 ~-----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 246 V-----RPN--DYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp H-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred h-----CcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7 222 2468899999999999999999999999984 355667899999999999999999999999
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 520 AKDIMDVSLGP---HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 520 al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
++.+.....++ .++....++..+|.+|..+|++++|..+++++++.+..
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 99987543211 12233678999999999999999999999999998876
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=221.69 Aligned_cols=296 Identities=13% Similarity=0.034 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
.++..+|..+...|++++|+..|+++++.. |....++..++.++...|++++|+.+++++++..+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------- 87 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP------- 87 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-------
Confidence 345678999999999999999999988543 33345677888999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 288 VEVAHDRRLLGVIYSGLE-EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
....++..+|.++...| ++++|+.++++++.+ .|....++..+|.++...|++++|+..+++++...+....
T Consensus 88 -~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 160 (330)
T 3hym_B 88 -SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL 160 (330)
T ss_dssp -TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH
T ss_pred -CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH
Confidence 23467889999999999 999999999998875 5667788999999999999999999999999998766543
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 006812 367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ 446 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 446 (630)
.+..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++.+.+...+
T Consensus 161 ----~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 228 (330)
T 3hym_B 161 ----PMLYIGLEYGLTNNSKLAERFFSQALSIA--------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228 (330)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence 67779999999999999999999998764 345678999999999999999999999999999876644
Q ss_pred CCC--chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 447 AQH--SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 447 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
... ....++..+|.++...|++++|+.++++++++ .|....++..+|.++...|++++|+.+|+++++
T Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 298 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALG-- 298 (330)
T ss_dssp SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--
Confidence 332 22568899999999999999999999999984 244556889999999999999999999999987
Q ss_pred HHhcCCCCHHHHHHHHHHHHHH-HhcCCHH
Q 006812 525 DVSLGPHHADSIEACQNLSKAY-SSMGSYT 553 (630)
Q Consensus 525 ~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 553 (630)
..|+...++..++.++ ...|+.+
T Consensus 299 ------~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 299 ------LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp ------TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred ------cCCCchHHHHHHHHHHHHHhCchh
Confidence 3455567899999988 5666654
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=9.3e-27 Score=227.99 Aligned_cols=317 Identities=13% Similarity=0.100 Sum_probs=244.9
Q ss_pred HHHHhCCChHHHHH-HHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCC
Q 006812 121 KLDQEGGDPEMTLS-FANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSV 199 (630)
Q Consensus 121 ~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 199 (630)
++...+ ++++|+. .|++++.+.+.. + ...+..++.+|.++...|++++|+..|++++..
T Consensus 34 ~~~~~~-~~~~a~~~~~~~a~~~~~~~-----~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------- 93 (368)
T 1fch_A 34 AHPWLS-DYDDLTSATYDKGYQFEEEN-----P-LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------------- 93 (368)
T ss_dssp -------------CHHHHCCCCCCSSC-----T-TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-------------
T ss_pred hhHHHH-HHHHHHhhhhhHHHhcCCCC-----c-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------
Confidence 344445 9999999 999888654221 1 112445678999999999999999999999986
Q ss_pred ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812 200 EDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279 (630)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (630)
.|....+++.+|.++...|++++|+.+|++++++. |....++..+|.+|...|++++|+..+++++.+.
T Consensus 94 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 94 ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred ---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23335678899999999999999999999999653 3336789999999999999999999999999865
Q ss_pred hhhcCCCC--------HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh--HHHHHHHHHHHHHHcCCHHH
Q 006812 280 KKGLGHNS--------VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE--LLRAEIDAANMQIALGKFEE 349 (630)
Q Consensus 280 ~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~ 349 (630)
+....... ......+..++.++ ..|++++|+.++++++.. .|. ...++..+|.++...|++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL------DPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH------STTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh------CcCcccHHHHHHHHHHHHHcCCHHH
Confidence 43210000 00111122466666 899999999999999886 444 67889999999999999999
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 006812 350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFET 429 (630)
Q Consensus 350 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 429 (630)
|+..+++++...+.+ ..++..+|.++...|++++|+.++++++.+. |....++..+|.++...|++++
T Consensus 236 A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 236 AVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHH
Confidence 999999999975544 4589999999999999999999999998874 4556889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 430 AISLLKRTLALLEKLPQAQ----HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 430 A~~~~~~al~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
|+.+|++++.+.+...++. .....++..+|.++...|++++|..++.++++.+.+.++
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 9999999999977663221 112568899999999999999999999999998877654
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.2e-24 Score=218.92 Aligned_cols=339 Identities=13% Similarity=-0.000 Sum_probs=281.5
Q ss_pred HHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhh----ccChHHHHHHHHH
Q 006812 111 LGLVGLKIALKLDQ----EGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYS----FKRFSDSLGYLSK 182 (630)
Q Consensus 111 ~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 182 (630)
.+.+++.+|..|.. .+ ++++|+.+|+++.+. ..+.+++.+|.+|.. .+++++|+.+|++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 140 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALK------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRL 140 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 35688999999998 77 999999999998753 124567889999998 8999999999999
Q ss_pred HHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 006812 183 ANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTA----MGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEA 258 (630)
Q Consensus 183 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 258 (630)
+.+. ....+++.+|.+|.. .+++++|+.+|+++.+. . ...++..+|.+
T Consensus 141 a~~~------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~ 192 (490)
T 2xm6_A 141 AAEQ------------------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------G---NVWSCNQLGYM 192 (490)
T ss_dssp HHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHH
T ss_pred HHHC------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHH
Confidence 8764 113567889999998 88999999999998753 1 25789999999
Q ss_pred HHH----hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHcCCChhH
Q 006812 259 FVA----VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG----LEEHQKALEQNELSQKVLKTWGLSSEL 330 (630)
Q Consensus 259 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~ 330 (630)
|.. .+++++|+.+|+++.+. .+ ..++..+|.+|.. .+++++|+.+|+++.+. ..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~ 254 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATS-------GD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--------GN 254 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--------TC
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CC
Confidence 998 89999999999999863 22 3567889999986 89999999999988763 33
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHh
Q 006812 331 LRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ-----EKFADAKRCLEIACGILDK 401 (630)
Q Consensus 331 ~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~ 401 (630)
..++..+|.+|.. .+++++|+.+|+++.+.. + ..++..+|.+|... +++++|+.+++++.+..
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---N---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---C---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 5688899999998 999999999999997641 2 34888999999988 99999999999987641
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHH
Q 006812 402 KETISPEEVADAYSEISMQYESMN---EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPY 474 (630)
Q Consensus 402 ~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 474 (630)
...++..+|.+|...| ++++|+.+|+++++. + ...+++++|.+|.. .+++++|+.+
T Consensus 327 --------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 327 --------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----G----EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp --------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred --------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 2367899999999866 899999999999873 1 34588999999999 8999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006812 475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS 548 (630)
Q Consensus 475 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 548 (630)
|+++++. . ...++.+||.+|.. .+++++|..+|+++++.. ++.|....+..+++.++..
T Consensus 390 ~~~A~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 390 MRKAAEQ-------G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHhC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHh
Confidence 9999871 2 35688999999999 899999999999999864 1225566788888887664
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=1.8e-25 Score=218.35 Aligned_cols=286 Identities=17% Similarity=0.092 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812 248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS 327 (630)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 327 (630)
....+..+|..+...|++++|+.+|++++...+ ....++..+|.++...|++++|+.+|++++.+ .
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~ 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--------GDAEAWQFLGITQAENENEQAAIVALQRCLEL------Q 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------C
Confidence 355688999999999999999999999998643 23577899999999999999999999999987 6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH------HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET------RALVFISMGKALCNQEKFADAKRCLEIACGILDK 401 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 401 (630)
|....++..+|.+|...|++++|+..+++++...+..... ....+..+|.++...|++++|+.++++++.+...
T Consensus 130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 209 (365)
T 4eqf_A 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD 209 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC
Confidence 7778899999999999999999999999999976654321 1344566799999999999999999999887421
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812 402 KETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAER 481 (630)
Q Consensus 402 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 481 (630)
. ....++..+|.++...|++++|+.+|++++++ .+. ...++..+|.++...|++++|+.+|++++++
T Consensus 210 ~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 210 M------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-----RPE--DYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp S------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 0 04578899999999999999999999999987 222 3468899999999999999999999999984
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHhcCCHHHHHH
Q 006812 482 LKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD----SIEACQNLSKAYSSMGSYTLAIE 557 (630)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~ 557 (630)
+|....++.++|.+|...|++++|+.+|++++.+.....++.++. ...++..++.++..+|+.+.|..
T Consensus 277 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 277 --------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp --------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 456678999999999999999999999999999887654433222 24789999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006812 558 FQQRAIDAWES 568 (630)
Q Consensus 558 ~~~~al~~~~~ 568 (630)
..++.+.++..
T Consensus 349 ~~~~~l~~~~~ 359 (365)
T 4eqf_A 349 ANLGDLDVLLR 359 (365)
T ss_dssp HHTTCCGGGTT
T ss_pred HHHhhHHHHHH
Confidence 88887766554
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.5e-25 Score=212.44 Aligned_cols=296 Identities=11% Similarity=0.093 Sum_probs=245.5
Q ss_pred HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE 238 (630)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 238 (630)
.+..+|..++..|++++|+..|++++.. +|.. ..++..++.++...|++++|+..++++++..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 86 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEK---------DPFH-------ASCLPVHIGTLVELNKANELFYLSHKLVDLY- 86 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC-------TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCC-------hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-
Confidence 5567899999999999999999999987 2222 2345568889999999999999999998643
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 006812 239 LILEEDSRELGVANRDLAEAFVAVL-NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELS 317 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 317 (630)
|....++..+|.++...| ++++|+.++++++.+.+ ....++..+|.++...|++++|+.+++++
T Consensus 87 -------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 151 (330)
T 3hym_B 87 -------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK--------TYGPAWIAYGHSFAVESEHDQAMAAYFTA 151 (330)
T ss_dssp -------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT--------TCTHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 333578999999999999 99999999999987533 23466889999999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812 318 QKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397 (630)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 397 (630)
+.. .|....++..+|.++...|++++|+..+++++...+.+ ..++..+|.++...|++++|+.++++++.
T Consensus 152 ~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 152 AQL------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED----PFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHH------TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHh------ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 887 45556677889999999999999999999999876554 45899999999999999999999999999
Q ss_pred HHHhhcCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHH
Q 006812 398 ILDKKETISP-EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLE 476 (630)
Q Consensus 398 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (630)
+......... +....++..+|.++...|++++|+.++++++.+. +. ...++..+|.++...|++++|+.+|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~--~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----PQ--NASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT--CSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----cc--chHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8765433221 3445789999999999999999999999999872 22 34588999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHH-HHcCChh
Q 006812 477 SAAERLKESFGPKHFGVGYIYNNLGAAY-LELDRPQ 511 (630)
Q Consensus 477 ~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 511 (630)
++++ ..|....++..+|.++ ...|+.+
T Consensus 295 ~al~--------~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 295 TALG--------LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTT--------TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHc--------cCCCchHHHHHHHHHHHHHhCchh
Confidence 9987 3466667889999988 4555543
No 30
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.94 E-value=9.7e-24 Score=206.70 Aligned_cols=331 Identities=12% Similarity=0.055 Sum_probs=255.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--HHHHhcCHHHHH---------HHHHHHHHHHhhhcCC
Q 006812 217 KTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAE--AFVAVLNFKEAL---------PFGLKALEIHKKGLGH 285 (630)
Q Consensus 217 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~---------~~~~~al~~~~~~~~~ 285 (630)
+...+++++|...++++....... ..+..+. .++.+-. .....+.+..+. ..+++.-......
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--- 95 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQM--EEDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL--- 95 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGB--CCCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHh--cccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---
Confidence 478999999999999876554332 2233332 3333222 122233443333 4443322111110
Q ss_pred CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812 286 NSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES 365 (630)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 365 (630)
+.......++..|..+...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.++++++...+...
T Consensus 96 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 175 (378)
T 3q15_A 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP 175 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST
T ss_pred ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC
Confidence 11223345778899999999999999999999999888887788999999999999999999999999999999887643
Q ss_pred ---hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 366 ---ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE 442 (630)
Q Consensus 366 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 442 (630)
...+.++..+|.+|...|++++|+.++++++.+..... +.+..+.++.++|.+|...|++++|+.++++++.+.+
T Consensus 176 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999987653 4457788999999999999999999999999999987
Q ss_pred hCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC---hhHHHHHHHH
Q 006812 443 KLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDR---PQSAAQVFAF 519 (630)
Q Consensus 443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 519 (630)
....+. ...++..+|.++...|++++|+.++++++++.... .++.....+..++.++...|+ +.+|+.++++
T Consensus 254 ~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 254 EKVPDL--LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHCGGG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hhCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 763322 26788999999999999999999999999976543 345555567889999998888 5555555554
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 520 AKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 520 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
. ...+....++..+|.+|...|++++|..+|++++++.+.+
T Consensus 329 ~---------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 329 K---------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp T---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred C---------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 1 2456777889999999999999999999999999887663
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=2.3e-25 Score=217.72 Aligned_cols=288 Identities=14% Similarity=0.064 Sum_probs=230.0
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
+..++.+|.++...|++++|+.+|++++.. .|....+++.+|.++...|++++|+..|++++++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ----------------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 445788999999999999999999999987 2333577889999999999999999999999965
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH--HHHHHHHHHHHHHhccccHHHHHHHH
Q 006812 237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV--EVAHDRRLLGVIYSGLEEHQKALEQN 314 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (630)
. |....++..+|.+|...|++++|+.++++++++.+........ .....+..+|.++...|++++|+.++
T Consensus 129 ~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 129 Q--------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred C--------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3 3336789999999999999999999999999976643211110 12345567799999999999999999
Q ss_pred HHHHHHHHHcCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006812 315 ELSQKVLKTWGLSSE--LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCL 392 (630)
Q Consensus 315 ~~a~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 392 (630)
++++.+ .|. ...++..+|.++...|++++|+..++++++..+.+ ..++..+|.++...|++++|+.++
T Consensus 201 ~~al~~------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 201 LEAAHQ------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHH------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHh------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999887 444 67889999999999999999999999999976554 458999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-----hhHHHHHHHHHHHHcCC
Q 006812 393 EIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-----EGSVSARIGWLLLLTGK 467 (630)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~ 467 (630)
++++.+. |....++..+|.+|...|++++|+.+|++++.+.+...+..++ ...++..++.++...|+
T Consensus 271 ~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 271 TRALEIQ--------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHC--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHhcC--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 9999874 4556899999999999999999999999999998876543221 25688999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhc
Q 006812 468 VPQAIPYLESAAERLKESF 486 (630)
Q Consensus 468 ~~~A~~~~~~al~~~~~~~ 486 (630)
.+.|.....+.++.+.+.+
T Consensus 343 ~~~a~~~~~~~l~~~~~~~ 361 (365)
T 4eqf_A 343 PELFQAANLGDLDVLLRAF 361 (365)
T ss_dssp HHHHHHHHTTCCGGGTTTT
T ss_pred HHHHHHHHHhhHHHHHHhc
Confidence 9999988887666554443
No 32
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.94 E-value=4.7e-23 Score=201.82 Aligned_cols=334 Identities=10% Similarity=0.006 Sum_probs=252.5
Q ss_pred HHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHH--HHHcCCHHHHH---------HHHHHHH
Q 006812 166 ANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANV--KTAMGRREEAL---------EHLQKCL 234 (630)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~---------~~~~~al 234 (630)
.+...+++++|...++++......+.... .+ ..++.+-.. ....+.+..+. ..+++.
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~----------~~-~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i- 88 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQ----------DL-LIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI- 88 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGBCCCH----------HH-HHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH-
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhcccH----------HH-HHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH-
Confidence 34789999999999999877654442211 11 122222221 11222222222 333321
Q ss_pred HHHHHHhcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHH
Q 006812 235 EIKELILEE-DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQ 313 (630)
Q Consensus 235 ~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (630)
+....+ ++......+...|..+...|++++|+.+|++++.+.... .+.+..+.++.++|.+|...|++++|+.+
T Consensus 89 ---~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~ 163 (378)
T 3q15_A 89 ---ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163 (378)
T ss_dssp ---HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 111111 122234467789999999999999999999999987764 24567889999999999999999999999
Q ss_pred HHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHH
Q 006812 314 NELSQKVLKTWGL-SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKR 390 (630)
Q Consensus 314 ~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 390 (630)
+++++.+....+. .+..+.++.++|.+|...|++++|+.++++++...+.. ....+.++.++|.+|...|++++|+.
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999988776 36788999999999999999999999999999987653 34567899999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh
Q 006812 391 CLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ 470 (630)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 470 (630)
++++++.+..... .|....++..+|.++...|++++|+.++++++++......+ .....+..++.++...|+.
T Consensus 244 ~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~l~~ly~~~~~~-- 316 (378)
T 3q15_A 244 HFQKAAKVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK--FYKELFLFLQAVYKETVDE-- 316 (378)
T ss_dssp HHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS--CHHHHHHHHHHHHSSSCCH--
T ss_pred HHHHHHHHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhCCCcH--
Confidence 9999999887653 24558899999999999999999999999999987665332 2233567788888888883
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812 471 AIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 471 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 527 (630)
..+.+++...++. ...+.....+..+|.+|...|++++|..+|++++++.++.
T Consensus 317 --~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 317 --RKIHDLLSYFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp --HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444332 3456777888999999999999999999999999987654
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.9e-23 Score=199.10 Aligned_cols=275 Identities=17% Similarity=0.164 Sum_probs=225.3
Q ss_pred CChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812 152 PSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQ 231 (630)
Q Consensus 152 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (630)
.+|..+.++..+|.++...|++++|+.++++++.+.....+.. .+....++..+|.++...|++++|+.+++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--------HPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS--------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3568899999999999999999999999999999988776433 45667889999999999999999999999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHH
Q 006812 232 KCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKAL 311 (630)
Q Consensus 232 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 311 (630)
+++++.+...+.+++....++..+|.+|...|++++|+.++++++++.....+.+++....++..+|.++...|++++|+
T Consensus 94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999988877788889999999999999999999999999999999988777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-----hH------HHHHHHHHHHH
Q 006812 312 EQNELSQKVLKTW--GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES-----ET------RALVFISMGKA 378 (630)
Q Consensus 312 ~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~------~~~~~~~la~~ 378 (630)
.++++++.+.... +..+....++..+|.+|...|++++|+.++++++...+... +. ....+..++..
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 9999999998776 44588889999999999999999999999999998654421 11 12233334444
Q ss_pred HHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 379 LCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLE 442 (630)
Q Consensus 379 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 442 (630)
+...+.+.+|...+..+.. .++....++..+|.+|...|++++|+.++++++++.+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ----CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 4555555556666665543 2367889999999999999999999999999998743
No 34
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.2e-23 Score=197.59 Aligned_cols=276 Identities=16% Similarity=0.100 Sum_probs=226.8
Q ss_pred hccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812 241 LEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320 (630)
Q Consensus 241 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 320 (630)
.+.++|....++..+|.++...|++++|+.++++++++.....+.+.+....++..+|.+|...|++++|+.++++++.+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999988776778889999999999999999999999999999999
Q ss_pred HHHc--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh----cchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812 321 LKTW--GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK----ESETRALVFISMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 321 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 394 (630)
.... +..+....++..+|.++...|++++|+.++++++..... +.+....++..+|.++...|++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8776 666888999999999999999999999999999987633 3466688999999999999999999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC----CCCCc----hhHHHHHHHHHHHHcC
Q 006812 395 ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP----QAQHS----EGSVSARIGWLLLLTG 466 (630)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~----~~~~~~~la~~~~~~g 466 (630)
++.+.....+.+.+....++..+|.++...|++++|+.++++++++..... ..... ....+..++..+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 999988876667788999999999999999999999999999998765421 11111 1223344555666778
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 467 KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
.+.+|...++++.. .+|....++..+|.+|...|++++|+.+|++++++.
T Consensus 259 ~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 259 SFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 88888888888776 568888999999999999999999999999999875
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.8e-23 Score=200.85 Aligned_cols=284 Identities=12% Similarity=0.108 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812 248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS 327 (630)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 327 (630)
....+..+|..+...|++++|+.+++++++..+ ....++..+|.++...|++++|+.++++++.. .
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~ 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP--------EREEAWRSLGLTQAENEKDGLAIIALNHARML------D 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C
Confidence 345678899999999999999999999998533 23567888999999999999999999999887 5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH---------HHHH-HH-HHHhhccHHHHHHHHHHHH
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV---------FISM-GK-ALCNQEKFADAKRCLEIAC 396 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~---------~~~l-a~-~~~~~~~~~~A~~~~~~a~ 396 (630)
|....++..+|.++...|++++|+..+++++...+......... ...+ +. ++...|++++|+.++++++
T Consensus 86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 66788999999999999999999999999998766543321111 1112 44 5888999999999999998
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHH
Q 006812 397 GILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLE 476 (630)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (630)
... |....++..+|.++...|++++|+.++++++.+ .+. ...++..+|.++...|++++|+.+++
T Consensus 166 ~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 166 EMN--------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPD--DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 764 345578999999999999999999999999986 222 24678999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhcCCH
Q 006812 477 SAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH----ADSIEACQNLSKAYSSMGSY 552 (630)
Q Consensus 477 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~ 552 (630)
++++. .|....++..+|.++...|++++|+.+|++++.+.....+... .....++..+|.++...|++
T Consensus 231 ~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 231 RALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 99984 3455668899999999999999999999999997643211111 11568999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006812 553 TLAIEFQQRAIDAWES 568 (630)
Q Consensus 553 ~~A~~~~~~al~~~~~ 568 (630)
++|...++++++.++.
T Consensus 303 ~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 303 DLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHhcch
Confidence 9999999999998876
No 36
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.92 E-value=2.9e-22 Score=196.16 Aligned_cols=313 Identities=14% Similarity=0.025 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHh
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRL 190 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 190 (630)
.+.++...|..+...| ++++|+.++++++...+. ......+.++..+|.++...|++++|+..+++++.+.+..
T Consensus 13 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 13 HAEFNALRAQVAINDG-NPDEAERLAKLALEELPP-----GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCT-----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCC-----CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 3566778888899998 999999999999986522 1123456688899999999999999999999999997664
Q ss_pred hhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHH
Q 006812 191 EEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALP 270 (630)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 270 (630)
.+ ......++..+|.++...|++++|+.++++++++.+...+..++....++..+|.++...|++++|..
T Consensus 87 ~~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 87 DV----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp TC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred Cc----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 32 22445677899999999999999999999999998876444447778889999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh-HHHHHHHHHHHHHHcCCHHH
Q 006812 271 FGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE-LLRAEIDAANMQIALGKFEE 349 (630)
Q Consensus 271 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 349 (630)
++++++.+.+.. .++....++..+|.++...|++++|..++++++.+....+.... ........+.++...|++++
T Consensus 157 ~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 157 SARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHTTTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 999999987753 22235577889999999999999999999999988655444311 11222345666889999999
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 006812 350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFET 429 (630)
Q Consensus 350 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 429 (630)
|..++++++...+.........+..++.++...|++++|...+++++....... .+.....++..+|.++...|++++
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999988654432222233578899999999999999999999998876643 234555688999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 006812 430 AISLLKRTLALLEKL 444 (630)
Q Consensus 430 A~~~~~~al~~~~~~ 444 (630)
|...+++++.+....
T Consensus 312 A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 312 AQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999986653
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=2.4e-23 Score=199.98 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=232.2
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
....++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+.+++++++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 83 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA----------------APEREEAWRSLGLTQAENEKDGLAIIALNHARM 83 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445678999999999999999999999987 223346778899999999999999999999986
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHH------HHHHHHH-HH-HHhccccH
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV------AHDRRLL-GV-IYSGLEEH 307 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------~~~~~~l-a~-~~~~~g~~ 307 (630)
+. |....++..+|.++...|++++|+..+++++...+...... ... ......+ +. ++...|++
T Consensus 84 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 84 LD--------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLG-SVNLQADVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------CCTTSHHHH
T ss_pred cC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH-HHHhHHHHHHHHHHHHHHhHHHHHcccH
Confidence 53 33367899999999999999999999999998654321000 000 0011122 44 58899999
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHH
Q 006812 308 QKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD 387 (630)
Q Consensus 308 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 387 (630)
++|+.++++++.. .|....++..+|.++...|++++|+..+++++...+.+ ..++..+|.++...|++++
T Consensus 155 ~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 155 RECRTLLHAALEM------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD----AQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp HHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHH
Confidence 9999999998886 56677899999999999999999999999999875544 4588999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-----hhHHHHHHHHHH
Q 006812 388 AKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-----EGSVSARIGWLL 462 (630)
Q Consensus 388 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~ 462 (630)
|+.++++++... |....++..+|.++...|++++|+.++++++.+.+...+.... ...++..+|.++
T Consensus 225 A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 225 ALDAYNRALDIN--------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp HHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence 999999998864 3445788999999999999999999999999986653222211 456889999999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 463 LLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
...|++++|..+++++++.....++
T Consensus 297 ~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 297 NVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999998776644
No 38
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.91 E-value=1.4e-21 Score=191.27 Aligned_cols=311 Identities=15% Similarity=0.063 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL 326 (630)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 326 (630)
..+.++..+|.++...|++++|+.++++++...+. .+......++..+|.++...|++++|+.++++++.+....+.
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 33577888899999999999999999999986532 122345667889999999999999999999999999988877
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES----ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK 402 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 402 (630)
......++.++|.++...|++++|+.++++++...+... +....++..+|.++...|++++|..++++++.+....
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 677788899999999999999999999999998876532 4567788899999999999999999999999887643
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHH--HHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 403 ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVS--ARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 403 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
. ++....++..+|.++...|++++|..++++++.+...... +...... ...+.++...|++++|..++++++.
T Consensus 169 ~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 169 Q---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY--HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp C---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred C---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc--chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 2 2235578889999999999999999999999988655321 1111111 2455668899999999999998876
Q ss_pred HHHHhcCCCC-ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812 481 RLKESFGPKH-FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQ 559 (630)
Q Consensus 481 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 559 (630)
.. +.. ......+..+|.++...|++++|...+++++....... ..+....++..+|.++...|++++|...+
T Consensus 244 ~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 244 PE-----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp CC-----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CC-----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 21 111 12233567899999999999999999999999876631 22345568899999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 006812 560 QRAIDAWESHGPS 572 (630)
Q Consensus 560 ~~al~~~~~~~~~ 572 (630)
++++.+....|..
T Consensus 317 ~~al~~~~~~g~~ 329 (373)
T 1hz4_A 317 LDALKLANRTGFI 329 (373)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHhccccHH
Confidence 9999999886653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1e-21 Score=181.48 Aligned_cols=238 Identities=16% Similarity=0.174 Sum_probs=207.9
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
..+..+..+|.++...|++++|+.+|++++... ....++..+|.++...|++++|+.++++++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----------------KDITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 467788999999999999999999999999982 113578899999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (630)
++.+... ++.+....++..+|.++...|++++|+.++++++.+.+. +.++...|++++|+..+
T Consensus 66 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 66 EQGREMR-ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------ADILTKLRNAEKELKKA 128 (258)
T ss_dssp HHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHH
T ss_pred HhCcccc-cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------hHHHHHHhHHHHHHHHH
Confidence 8876542 345556889999999999999999999999999986432 45677788999999999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812 315 ELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 394 (630)
++++.. .|....++..+|.++...|++++|+..+++++...+.+ ..++..+|.++...|++++|+.++++
T Consensus 129 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 129 EAEAYV------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHc------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 988775 68888999999999999999999999999999976554 45899999999999999999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812 395 ACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL 444 (630)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 444 (630)
+++.. |....++..+|.++...|++++|..++++++++.+..
T Consensus 199 al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 199 AIEKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 98864 3456789999999999999999999999999987654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.4e-21 Score=179.08 Aligned_cols=253 Identities=14% Similarity=0.070 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL 326 (630)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 326 (630)
..+..+..+|.++...|++++|+.+|+++++.. . ...++..+|.++...|++++|+.++++++.+....+.
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K--------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c--------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence 346789999999999999999999999999864 1 1367889999999999999999999999998776654
Q ss_pred C-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812 327 S-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI 405 (630)
Q Consensus 327 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 405 (630)
. +....++..+|.++...|++++|+..+++++...+. +.++...|++++|+..+++++...
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~------ 135 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------ADILTKLRNAEKELKKAEAEAYVN------ 135 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------------hHHHHHHhHHHHHHHHHHHHHHcC------
Confidence 4 445889999999999999999999999999986543 456778899999999999987753
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812 406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES 485 (630)
Q Consensus 406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (630)
|....++..+|.++...|++++|+.++++++.+. +. ...++..+|.++...|++++|+.++++++++
T Consensus 136 --~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---- 202 (258)
T 3uq3_A 136 --PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PE--DARGYSNRAAALAKLMSFPEAIADCNKAIEK---- 202 (258)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred --cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----
Confidence 6778899999999999999999999999999862 22 2468899999999999999999999999984
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006812 486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKA 545 (630)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 545 (630)
.|....++..+|.++...|++++|+.+|++++++..+.. ..|....++..++.+
T Consensus 203 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 ----DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKA 256 (258)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence 355567899999999999999999999999999875442 234455566555543
No 41
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.90 E-value=1.8e-21 Score=182.59 Aligned_cols=263 Identities=17% Similarity=0.101 Sum_probs=217.8
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc--CCChhHHHHHHH
Q 006812 259 FVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW--GLSSELLRAEID 336 (630)
Q Consensus 259 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~ 336 (630)
....|++++|+.+|++++++..+..+.+++....++..+|.++...|++++|+.++++++.+.... ++.+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 456789999999999999999998888889999999999999999999999999999999998777 666889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhh----cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Q 006812 337 AANMQIALGKFEEAINTLKGVVRQTEK----ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVAD 412 (630)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 412 (630)
+|.+|...|++++|+.++++++..... +.+....++..+|.++...|++++|+.++++++.+.....+.+++....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999999987643 2466788999999999999999999999999999988887777889999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-CCCC-chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 413 AYSEISMQYESMNEFETAISLLKRTLALLEKLP-QAQH-SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
++..+|.++...|++++|+.++++++.+..... +... .....+..++..+...+....+.. +..+...... .+..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~ 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKA-CKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------C-CCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHh-cCCCC
Confidence 999999999999999999999999999865532 1112 224566777777777666665554 4444443333 44567
Q ss_pred ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
+....++..+|.+|...|++++|+.+|++++++
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999999999999999999874
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=4e-22 Score=198.85 Aligned_cols=379 Identities=14% Similarity=0.074 Sum_probs=263.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccCh---HHHHHHHHHHHHHHhHhhh
Q 006812 116 LKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRF---SDSLGYLSKANRMLGRLEE 192 (630)
Q Consensus 116 ~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~~ 192 (630)
..+|..++..| ++++|+.+|+++.+. ++ +.+++.+|.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g-~~~~A~~~~~~aa~~------g~------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------ 67 (452)
T 3e4b_A 7 QRLANEALKRG-DTVTAQQNYQQLAEL------GY------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------ 67 (452)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHH------TC------CTGGGTCC-------------------------------
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHC------CC------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------
Confidence 34667777777 999999999998653 12 23567899999999999 9999999999864
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHH
Q 006812 193 EGLGGSVEDIKPIMHAVHLELANVKTAMG-----RREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKE 267 (630)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 267 (630)
...+++.+|.++...| ++++|+.+|+++++ ..+ ..++..||.+|...+...+
T Consensus 68 -------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 68 -------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA-------NGE---GNTLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH-------TTC---SSCHHHHHHHHHHCGGGCT
T ss_pred -------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH-------CCC---HHHHHHHHHHHHhCCCCCC
Confidence 1245678999777766 88999999999885 122 2478899999999887766
Q ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC--
Q 006812 268 ALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG-- 345 (630)
Q Consensus 268 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 345 (630)
+...++......+. .+ ..+.+.+|.+|...+.++++........+... ..++. ++..+|.+|...|
T Consensus 125 ~~~a~~~~~~a~~~----g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~--~~~~~---a~~~Lg~~~~~~g~~ 192 (452)
T 3e4b_A 125 NVNAQQQISQWQAA----GY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAAL--NTTDI---CYVELATVYQKKQQP 192 (452)
T ss_dssp TCCHHHHHHHHHHH----TC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT--TTCTT---HHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHC----CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--cCCHH---HHHHHHHHHHHcCCc
Confidence 65554444443332 11 35677899999999977777665443332221 11232 8899999999999
Q ss_pred -CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 006812 346 -KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ----EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ 420 (630)
Q Consensus 346 -~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 420 (630)
++++|+.+|+++.+..+.. +..++++|.+|... +++++|+.+|+++. . ....+++++|.+
T Consensus 193 ~~~~~A~~~~~~aa~~g~~~----a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~--------g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 193 EQQAELLKQMEAGVSRGTVT----AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P--------GYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G--------GSTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C--------CCHHHHHHHHHH
Confidence 9999999999998854333 44668999999766 79999999999986 1 334788999998
Q ss_pred -H--HHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC-----ChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812 421 -Y--ESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG-----KVPQAIPYLESAAERLKESFGPKHFG 492 (630)
Q Consensus 421 -~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (630)
+ ...+++++|+.+|+++.+. + ...+++++|.+|. .| ++++|+.+|+++. +.
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g 316 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----------GR 316 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----------TT
T ss_pred HHhCCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----------CC
Confidence 4 5789999999999999863 1 3458899999998 56 9999999999876 22
Q ss_pred HHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 006812 493 VGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS----MGSYTLAIEFQQRAID 564 (630)
Q Consensus 493 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 564 (630)
...++++||.+|.. ..++++|+.+|+++.+. .+ ..++++||.+|.. ..++.+|..+|++|.+
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-------GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-------TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-------Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 34588999999987 44999999999999762 22 3688999999985 5699999999999863
Q ss_pred H--------HHH-cCCCchhHHHHHHHHHHHHHHHhcCC
Q 006812 565 A--------WES-HGPSAQDELREARRLLEQLKIKASGA 594 (630)
Q Consensus 565 ~--------~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~ 594 (630)
. ... ...-.+++..+|..+.++........
T Consensus 387 ~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 425 (452)
T 3e4b_A 387 QDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTL 425 (452)
T ss_dssp TCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccc
Confidence 2 222 22235678889999988877665443
No 43
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.90 E-value=2.1e-21 Score=182.20 Aligned_cols=260 Identities=18% Similarity=0.121 Sum_probs=215.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
++++|+.+|++++++.....+.+ ++..+.++..+|.++...|++++|+.++++++.+.+...+.. .+...
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~ 85 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD--------HPAVA 85 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSS--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--------CHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc--------chHHH
Confidence 99999999999999998874333 468899999999999999999999999999999987764443 45677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
.++..+|.++...|++++|+.+|++++++.+...++++|....++..+|.+|...|++++|+.++++++++.....+.++
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88999999999999999999999999999998888888999999999999999999999999999999999888877888
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC--C-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---Hh
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG--L-SSELLRAEIDAANMQIALGKFEEAINTLKGVVR---QT 361 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~ 361 (630)
+....++..+|.++...|++++|+.++++++.+....+ . .+.....+..++..+...+....+.. +..+.. ..
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 244 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKAC 244 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhc
Confidence 99999999999999999999999999999999865532 1 24444555666666665554443333 222222 22
Q ss_pred hhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 006812 362 EKESETRALVFISMGKALCNQEKFADAKRCLEIACGI 398 (630)
Q Consensus 362 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 398 (630)
....+....++..+|.+|...|++++|..++++++++
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345777889999999999999999999999999864
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=3.9e-22 Score=185.93 Aligned_cols=244 Identities=13% Similarity=0.020 Sum_probs=206.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812 293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVF 372 (630)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 372 (630)
.+...|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++. .+.++.....++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~ 77 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADF 77 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHH
Confidence 4667899999999999999999998875 455666889999999999999999999999998 444444446789
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchh
Q 006812 373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEG 452 (630)
Q Consensus 373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 452 (630)
..+|.++...|++++|+.++++++++. |....++..+|.+|...|++++|+.++++++.+ .+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~~ 142 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------TTTDP 142 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------SCCCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------CCCcH
Confidence 999999999999999999999999875 344578999999999999999999999999875 22235
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhcC
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDR---PQSAAQVFAFAKDIMDVSLG 529 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~ 529 (630)
.++..+|......+++++|+.+|++++++ .|....++..+|.++...|+ +++|+..|++++++......
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 68899995555566999999999999984 35556788999999999999 99999999999998765432
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
+.......++..+|.+|...|++++|+.+|++++++.
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2223355899999999999999999999999999863
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=6.5e-22 Score=190.59 Aligned_cols=256 Identities=9% Similarity=0.043 Sum_probs=217.6
Q ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Q 006812 244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE-HQKALEQNELSQKVLK 322 (630)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~ 322 (630)
..|....++..+|.++...|++++|+..|++++.+.+ ....+++++|.++..+|+ +++|+.+|++++.+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P--------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-- 161 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA--------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-- 161 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc--------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence 3466688899999999999999999999999998644 346789999999999997 99999999999998
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812 323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKK 402 (630)
Q Consensus 323 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 402 (630)
+|....++.++|.++..+|++++|+..|++++...+.+ ..+|.++|.++...|++++|+.++++++++.
T Consensus 162 ----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~----~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--- 230 (382)
T 2h6f_A 162 ----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN----YHAWQHRQWVIQEFKLWDNELQYVDQLLKED--- 230 (382)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence 88889999999999999999999999999999976665 4589999999999999999999999999875
Q ss_pred cCCCcHHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC--ChhhHHHH
Q 006812 403 ETISPEEVADAYSEISMQYES-MNEFETA-----ISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG--KVPQAIPY 474 (630)
Q Consensus 403 ~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~ 474 (630)
|....+|+++|.++.. .|.+++| +.+|++++.+ .+. ...++.++|.++...| ++++|++.
T Consensus 231 -----P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~--~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 231 -----VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPH--NESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STT--CHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCC--CHHHHHHHHHHHHccCccchHHHHHH
Confidence 5667899999999999 5655777 5899999987 222 2468899999999988 68899887
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC--------C-hhHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHH
Q 006812 475 LESAAERLKESFGPKHFGVGYIYNNLGAAYLELD--------R-PQSAAQVFAFA-KDIMDVSLGPHHADSIEACQNLSK 544 (630)
Q Consensus 475 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~ 544 (630)
++++ + ..|....++..+|.+|..+| + +++|+.+|+++ ++ .+|.....|..++.
T Consensus 299 ~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 299 LLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGGHHHHHHHHH
T ss_pred HHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchhHHHHHHHHH
Confidence 7665 3 35667778999999999985 2 58888888887 55 56777788888888
Q ss_pred HHHhc
Q 006812 545 AYSSM 549 (630)
Q Consensus 545 ~~~~~ 549 (630)
.+..+
T Consensus 362 ~l~~~ 366 (382)
T 2h6f_A 362 SLQSK 366 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.88 E-value=1.6e-21 Score=187.90 Aligned_cols=256 Identities=11% Similarity=0.012 Sum_probs=213.6
Q ss_pred CcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccC-hHHHHHHHHHHHH
Q 006812 107 DETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKR-FSDSLGYLSKANR 185 (630)
Q Consensus 107 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~ 185 (630)
-+|....++..+|.++...| ++++|+..|++++.+. |....+++.+|.++..+|+ +++|+..|++++.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g-~~~~Al~~~~~al~l~----------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDE-RSERAFKLTRDAIELN----------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhC----------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 45778889999999999998 9999999999999875 3346788999999999997 9999999999999
Q ss_pred HHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCH
Q 006812 186 MLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNF 265 (630)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 265 (630)
+ .|....+|+.+|.++..+|++++|+..|++++++. |....++.++|.++...|++
T Consensus 161 l----------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------P~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 161 E----------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------AKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp H----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCC
T ss_pred H----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHHHcCCh
Confidence 8 44456789999999999999999999999999654 34468899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-cccHHHH-----HHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812 266 KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG-LEEHQKA-----LEQNELSQKVLKTWGLSSELLRAEIDAAN 339 (630)
Q Consensus 266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 339 (630)
++|+.+|++++++.+ ....+++++|.++.. .|.+++| +.+|++++.+ .|....++.+++.
T Consensus 217 ~eAl~~~~~al~l~P--------~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l------~P~~~~a~~~l~~ 282 (382)
T 2h6f_A 217 DNELQYVDQLLKEDV--------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL------VPHNESAWNYLKG 282 (382)
T ss_dssp TTHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH------STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHH
Confidence 999999999999744 345788999999999 5655787 5889999987 7888899999999
Q ss_pred HHHHcC--CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhc--------c-HHHHHHHHHHH-HHHHHhhcCCCc
Q 006812 340 MQIALG--KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQE--------K-FADAKRCLEIA-CGILDKKETISP 407 (630)
Q Consensus 340 ~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~--------~-~~~A~~~~~~a-~~~~~~~~~~~~ 407 (630)
++...| ++++|++.++++ + ..+....++..+|.+|..+| + +++|+.+|+++ +++.
T Consensus 283 ll~~~g~~~~~~a~~~~~~~-~----~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-------- 349 (382)
T 2h6f_A 283 ILQDRGLSKYPNLLNQLLDL-Q----PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-------- 349 (382)
T ss_dssp HHTTTCGGGCHHHHHHHHHH-T----TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHccCccchHHHHHHHHHh-c----cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC--------
Confidence 999988 689999988876 3 22233558889999999875 3 58888888886 5543
Q ss_pred HHHHHHHHHHHHHHHHc
Q 006812 408 EEVADAYSEISMQYESM 424 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~ 424 (630)
|.....|..++..+..+
T Consensus 350 P~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 350 TIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 56667787777766543
No 47
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=3.9e-20 Score=189.73 Aligned_cols=412 Identities=10% Similarity=-0.008 Sum_probs=282.3
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRML 187 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (630)
+|....+|..++.. ...| ++++|...|+++++.. |.....+..++..+...|++++|...|++++...
T Consensus 9 ~P~~~~~w~~l~~~-~~~~-~~~~a~~~~e~al~~~----------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQ-PIDKARKTYERLVAQF----------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSS-CHHHHHHHHHHHHTTC----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHH-HHhC-CHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 46777888888874 6677 9999999999999765 3346678889999999999999999999999871
Q ss_pred hHhhhcCCCCCCccchhhHHHHHHHHH-HHHHHcCCHHHHHH----HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-
Q 006812 188 GRLEEEGLGGSVEDIKPIMHAVHLELA-NVKTAMGRREEALE----HLQKCLEIKELILEEDSRELGVANRDLAEAFVA- 261 (630)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~- 261 (630)
|. ...+..++ ......|++++|.+ .|++++.. .+ .++.....+...+.....
T Consensus 77 ----------------p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g-~~~~~~~~w~~~~~~~~~~ 134 (530)
T 2ooe_A 77 ----------------LH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IG-MEIMSYQIWVDYINFLKGV 134 (530)
T ss_dssp ----------------CC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TT-TSTTCHHHHHHHHHHHHHS
T ss_pred ----------------CC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CC-CCcccHHHHHHHHHHHhcC
Confidence 21 12444455 34456788887776 55555532 22 222234556666665554
Q ss_pred --------hcCHHHHHHHHHHHHHHHhhhcCCCCH-HHHHHHHHHH----------HHHhccccHHHHHHHHHHHHHHHH
Q 006812 262 --------VLNFKEALPFGLKALEIHKKGLGHNSV-EVAHDRRLLG----------VIYSGLEEHQKALEQNELSQKVLK 322 (630)
Q Consensus 262 --------~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la----------~~~~~~g~~~~A~~~~~~a~~~~~ 322 (630)
.|++++|..+|++++.. +. ... .....+..+. .+....+++..|...+.....+..
T Consensus 135 ~~~~~~~~~~~~~~a~~~y~~al~~-P~----~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 135 EAVGSYAENQRITAVRRVYQRGCVN-PM----INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHTTS-CC----TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhHHHHHHHHHHHHHhc-hh----hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 78999999999999872 21 111 1111111111 111245677888877766554444
Q ss_pred HcCC-----Chh-------HHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh-
Q 006812 323 TWGL-----SSE-------LLRAEIDAANMQIAL----GKF----EEAINTLKGVVRQTEKESETRALVFISMGKALCN- 381 (630)
Q Consensus 323 ~~~~-----~~~-------~~~~~~~la~~~~~~----g~~----~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~- 381 (630)
.+.. .|. ....+.......... ++. ..++..|++++...+.+ ..+|..+|..+..
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~----~~~w~~~~~~~~~~ 285 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH----PDIWYEAAQYLEQS 285 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHh
Confidence 4432 111 123333333222221 232 47888999999976654 4488999988876
Q ss_pred ------hccHH-------HHHHHHHHHHH-HHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 382 ------QEKFA-------DAKRCLEIACG-ILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 382 ------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
.|+++ +|...+++++. +. |....++..+|.++...|++++|...|++++++ .+
T Consensus 286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~--------p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p 352 (530)
T 2ooe_A 286 SKLLAEKGDMNNAKLFSDEAANIYERAISTLL--------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----ED 352 (530)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SS
T ss_pred chhhhhccchhhhhhhhHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cc
Confidence 78887 78888888875 32 455688999999999999999999999999984 22
Q ss_pred CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHHHH
Q 006812 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA-YLELDRPQSAAQVFAFAKDIMDV 526 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~ 526 (630)
..+ ..+|..++.++...|++++|+..|+++++. .|.....+...+.+ +...|++++|..+|+++++..
T Consensus 353 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-- 421 (530)
T 2ooe_A 353 IDP-TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-- 421 (530)
T ss_dssp SCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--
T ss_pred cCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--
Confidence 211 247899999999999999999999999872 22223344444444 446899999999999999864
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------HHHcC--CCchhHHHHHHHHHHHHHHHhc
Q 006812 527 SLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA-----------WESHG--PSAQDELREARRLLEQLKIKAS 592 (630)
Q Consensus 527 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~~~~~--~~~~~~~~~A~~~~~~~~~~~~ 592 (630)
|+...++..++.++...|+.++|..+|++++.. +.... ....|+.+.+..++.++.+...
T Consensus 422 ------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 422 ------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp ------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred ------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344578899999999999999999999999864 21100 0133667777788877766654
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=1.5e-21 Score=181.95 Aligned_cols=262 Identities=13% Similarity=-0.007 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 329 (630)
..+...|.++...|++++|+.+|+++++..+. ...++..+|.++...|++++|+.++++++.. ......
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN--------SPYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC--------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhH
Confidence 45778899999999999999999999986442 2346788999999999999999999998772 122233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
...++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+.++++++.+. |.
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~ 140 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--------TT 140 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--------CC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHhhcC--------CC
Confidence 477899999999999999999999999999766553 489999999999999999999999988762 45
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCC---hhhHHHHHHHHHHHHHHhc
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGK---VPQAIPYLESAAERLKESF 486 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~ 486 (630)
...++..+|......+++++|+.++++++++. +. ....+..+|.++...|+ +++|+..|++++++.....
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 213 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-----PN--IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT--CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----cc--chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc
Confidence 56788999944445569999999999999872 22 24578899999999999 9999999999999875442
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812 487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM 549 (630)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 549 (630)
.+.......++..+|.+|...|++++|+.+|++++++. |+...+...++.+....
T Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 214 AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD--------PTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHC------
T ss_pred ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------ccHHHHHHHhhhhhccc
Confidence 11122356789999999999999999999999999852 44445666666555443
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=1.4e-21 Score=174.46 Aligned_cols=198 Identities=15% Similarity=0.159 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
...++..+|.++...|++++|+..|+++++..+.+ ..++..+|.++...|++++|+..+++++++. |.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~ 71 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVART--------PR 71 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Confidence 34567778888888888888888888888755444 4478888888888888888888888887764 45
Q ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHH
Q 006812 410 VADAYSEISMQYESM-----------NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESA 478 (630)
Q Consensus 410 ~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 478 (630)
...++..+|.++... |++++|+..|++++++ .+. ...++..+|.++...|++++|+..|+++
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPR--YAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----Ccc--cHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 567788888888888 9999999999999997 222 3468899999999999999999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 006812 479 AERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEF 558 (630)
Q Consensus 479 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 558 (630)
+++ + ....++.++|.++...|++++|+..|++++++ +|+...++.++|.++...|++++|+..
T Consensus 145 l~~-------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 145 LAL-------E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp HHH-------C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----------
T ss_pred Hhc-------c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 995 2 34568899999999999999999999999984 456668999999999999999999999
Q ss_pred HHHHH
Q 006812 559 QQRAI 563 (630)
Q Consensus 559 ~~~al 563 (630)
|+++-
T Consensus 208 ~~~~~ 212 (217)
T 2pl2_A 208 AALEH 212 (217)
T ss_dssp -----
T ss_pred HHHHh
Confidence 98764
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=2.1e-21 Score=173.29 Aligned_cols=198 Identities=21% Similarity=0.152 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812 291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL 370 (630)
Q Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 370 (630)
..++..+|.++...|++++|+..|+++++. +|....++..+|.++...|++++|+..++++++..+.+ ..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~ 74 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY----LG 74 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HH
Confidence 356789999999999999999999998876 78889999999999999999999999999999976655 44
Q ss_pred HHHHHHHHHHhh-----------ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 371 VFISMGKALCNQ-----------EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 371 ~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
++..+|.++... |++++|+..+++++++. |....++..+|.++...|++++|+..|+++++
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------PRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 899999999999 99999999999999875 56668899999999999999999999999999
Q ss_pred HHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006812 440 LLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAF 519 (630)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (630)
+. ....++.++|.++...|++++|+..|++++++ +|....++..+|.++...|++++|+..|++
T Consensus 147 ~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 147 LE--------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-------------
T ss_pred cc--------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 72 23458899999999999999999999999984 466677899999999999999999999998
Q ss_pred HHH
Q 006812 520 AKD 522 (630)
Q Consensus 520 al~ 522 (630)
+-.
T Consensus 211 ~~~ 213 (217)
T 2pl2_A 211 EHH 213 (217)
T ss_dssp ---
T ss_pred Hhh
Confidence 743
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=1.7e-20 Score=187.10 Aligned_cols=357 Identities=12% Similarity=0.026 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhcc-----ChHHHHHHHHHH
Q 006812 112 GLVGLKIALKLDQEGGDP---EMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFK-----RFSDSLGYLSKA 183 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~a 183 (630)
..+++.+|.++...| ++ ++|+.+|+++++. .+.+++.+|.++...+ ++++|+.+|+++
T Consensus 35 ~~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~-------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~A 100 (452)
T 3e4b_A 35 SEAQVGLADIQVGTR-DPAQIKQAEATYRAAADT-------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKA 100 (452)
T ss_dssp CTGGGTCC------------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHH
Confidence 456778888888877 77 9999999999854 1235678999666665 789999999999
Q ss_pred HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Q 006812 184 NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL 263 (630)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (630)
+.. +.. .+++.||.+|...+...++...++......+. ....+...+|.+|...+
T Consensus 101 a~~-----g~~-------------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-------g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 101 FAN-----GEG-------------NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-------GYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHT-----TCS-------------SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-------TCTTHHHHHHHHHHHHT
T ss_pred HHC-----CCH-------------HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCC
Confidence 873 111 25678999999988776665444443322221 12467889999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 006812 264 NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE---EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANM 340 (630)
Q Consensus 264 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 340 (630)
.++++............. .++. ++++||.+|...| ++++|+.+|+++.+. .+.....+.++|.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~------g~~~a~~~~~Lg~~ 222 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR------GTVTAQRVDSVARV 222 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT------TCSCHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC------CCHHHHHHHHHHHH
Confidence 888888775554443332 2222 7889999999999 999999999998875 45556667899999
Q ss_pred HHHc----CCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH-H--HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 006812 341 QIAL----GKFEEAINTLKGVVRQTEKESETRALVFISMGKA-L--CNQEKFADAKRCLEIACGILDKKETISPEEVADA 413 (630)
Q Consensus 341 ~~~~----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (630)
|... +++++|+.+|+++. +.+ +.+++++|.+ + ...+++++|+.+|+++.+. ....+
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa---~g~----~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------g~~~A 285 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA---PGY----PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------DQPRA 285 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG---GGS----THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------TCHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHc---CCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------CCHHH
Confidence 9765 79999999999987 333 3388999998 4 5689999999999998743 24478
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHH
Q 006812 414 YSEISMQYESMN-----EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKE 484 (630)
Q Consensus 414 ~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~ 484 (630)
++++|.+|. .| ++++|+.+|+++. . + ...+++++|.+|.. ..++++|+.+|+++.+
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-----g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~---- 350 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-----R----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR---- 350 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-----T----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-----C----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh----
Confidence 899999998 56 9999999999886 1 1 34588999999887 4499999999999987
Q ss_pred hcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc--CCHHHHHHH
Q 006812 485 SFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM--GSYTLAIEF 558 (630)
Q Consensus 485 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~ 558 (630)
..+ ..+.++||.+|.. ..++.+|..+|+++.+. .++ .+...++.+...+ ++..+|...
T Consensus 351 ---~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-------g~~---~a~~~l~~l~~~~~~~~~~~a~~~ 414 (452)
T 3e4b_A 351 ---NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-------DTP---EANDLATQLEAPLTPAQRAEGQRL 414 (452)
T ss_dssp ---TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT-------CCH---HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ---hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC-------CCH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 223 3478899999985 46899999999999872 233 3455566665433 356667777
Q ss_pred HHHHHHHHHH
Q 006812 559 QQRAIDAWES 568 (630)
Q Consensus 559 ~~~al~~~~~ 568 (630)
.++..+....
T Consensus 415 ~~~~~~~~~~ 424 (452)
T 3e4b_A 415 VQQELAARGT 424 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccc
Confidence 7766655443
No 52
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=4e-20 Score=172.58 Aligned_cols=280 Identities=14% Similarity=0.080 Sum_probs=213.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 006812 257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV-AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEI 335 (630)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (630)
...+..|+|..|+..+++... .+|.. ......++.+|..+|+++.|+..++. ..+....++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~~~~a~~ 69 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAPELQAVR 69 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCChhHHHHH
Confidence 345678999999998876432 23333 34566789999999999999976543 1455678888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812 336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS 415 (630)
Q Consensus 336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (630)
.++..+...+++++|+..+++++... ..|....++..+|.++...|++++|+..+++ +....++.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~~~~~ 134 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSLECMA 134 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCHHHHH
Confidence 99999999999999999999988742 0122245889999999999999999999886 13346888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHH
Q 006812 416 EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY 495 (630)
Q Consensus 416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 495 (630)
.+|.++..+|++++|+..+++++.. .++.........+..++...|++++|+.+|+++++. .|....
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p~~~~ 201 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQ-----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CSPTLL 201 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CCCcHH
Confidence 9999999999999999999999986 222211111122223444568999999999999983 466677
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHcCCCch
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL-AIEFQQRAIDAWESHGPSAQ 574 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~ 574 (630)
+++++|.++..+|++++|+..|++++.+ +|+...++.++|.++...|+..+ +..++++++++.+..+ ..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~--~~ 271 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP--FI 271 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh--HH
Confidence 9999999999999999999999999984 45666889999999999999976 5688888886643211 22
Q ss_pred hHHHHHHHHHHHHHHHh
Q 006812 575 DELREARRLLEQLKIKA 591 (630)
Q Consensus 575 ~~~~~A~~~~~~~~~~~ 591 (630)
.++.+....|+++..+.
T Consensus 272 ~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 272 KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34566667777766553
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=2.3e-19 Score=167.45 Aligned_cols=280 Identities=11% Similarity=0.026 Sum_probs=211.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 006812 215 NVKTAMGRREEALEHLQKCLEIKELILEEDSREL-GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHD 293 (630)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 293 (630)
...+..|+|..|+..+++.. ..+|.. ......++.+|...|++++|+..++. .+++ ...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~--------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~~~~-~~~a 67 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVK--------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAP-ELQA 67 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSC--------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------TSCH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------cCCh-hHHH
Confidence 34567899999999887643 333433 45677789999999999999975543 1333 5677
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812 294 RRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI 373 (630)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 373 (630)
+..++..+...|++++|++.+++.+.. +..|+...++..+|.++...|++++|+..+++ + ....++.
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~----~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~----~~~~~~~ 134 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSR----SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G----DSLECMA 134 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHS----CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C----CSHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhc----ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C----CCHHHHH
Confidence 888999999999999999998876542 22477788899999999999999999999987 2 2244889
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 453 (630)
.+|.++..+|++++|+..+++++.... +.. .......+..++...|++++|+..|+++++. .+ ....
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p--~~~~ 201 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQDE-----DAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CS--PTLL 201 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SC--CCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc-----CcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CC--CcHH
Confidence 999999999999999999999987731 111 1111111223344569999999999999986 22 2356
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHHHhcCCCC
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS-AAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~ 532 (630)
+++++|.++...|++++|+..|++++++ +|..+.++.++|.++...|++.+ +..++++++++ .|++
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-----~P~~ 268 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-----HRSH 268 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----CCCC
Confidence 8899999999999999999999999983 46667789999999999999986 56889999885 3456
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812 533 ADSIEACQNLSKAYSSMGSYTLAIEFQ 559 (630)
Q Consensus 533 ~~~~~~~~~la~~~~~~g~~~~A~~~~ 559 (630)
|...+ +..+.+.++++..-|
T Consensus 269 ~~~~d-------~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 269 PFIKE-------YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHH-------HHHHHHHHHHHHHHc
Confidence 64432 344445555554433
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=3e-19 Score=166.26 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcc
Q 006812 290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKES 365 (630)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~ 365 (630)
...++..+|.++...|++++|+.+|+++++ +....++..+|.+|.. .+++++|+.+|+++++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----
Confidence 356788999999999999999999999887 2345788999999999 999999999999999863
Q ss_pred hHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 006812 366 ETRALVFISMGKALCN----QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRT 437 (630)
Q Consensus 366 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 437 (630)
...++..+|.+|.. .+++++|+.+++++++.. ...++..+|.+|.. .+++++|+.+|+++
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 24589999999999 999999999999998741 34788999999999 99999999999999
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCC
Q 006812 438 LALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDR 509 (630)
Q Consensus 438 l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 509 (630)
++. + ...++..+|.+|.. .+++++|+.+|+++++. . ...++..+|.+|.. .++
T Consensus 141 ~~~-----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 141 CDL-----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K---DSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHT-----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTCSSCCC
T ss_pred Hhc-----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCcc
Confidence 984 1 23578999999999 99999999999999972 2 24688999999999 999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 006812 510 PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS----MGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 510 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 565 (630)
+++|+.+|+++++. . + ..++.++|.+|.. .+++++|+.+|+++++.
T Consensus 202 ~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 202 FKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 99999999999983 1 2 4689999999999 99999999999999875
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=2.7e-19 Score=167.70 Aligned_cols=236 Identities=14% Similarity=0.060 Sum_probs=182.1
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHH
Q 006812 298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISM 375 (630)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~l 375 (630)
|.+|...|++++|+.+|.+++.+....++.+....++.++|.+|...|++++|+.+|++++.+.+... ...+.++.++
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56778899999999999999999988887778899999999999999999999999999999887643 3447789999
Q ss_pred HHHHHhh-ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812 376 GKALCNQ-EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV 454 (630)
Q Consensus 376 a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 454 (630)
|.+|... |++++|+.+|++++.+..... .+.....++.++|.++..+|++++|+.+|++++.+..............
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 9999996 999999999999999986543 2234567899999999999999999999999998743321111112336
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH--HcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812 455 SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL--ELDRPQSAAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~ 532 (630)
+.++|.++..+|++++|+.+|++++++..... .......+..++..+. ..+++++|+..|++++. .+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--------l~ 270 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--------LD 270 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--------CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--------cH
Confidence 78999999999999999999999998543321 1122334556677665 45678888888877655 45
Q ss_pred HHHHHHHHHHHHHH
Q 006812 533 ADSIEACQNLSKAY 546 (630)
Q Consensus 533 ~~~~~~~~~la~~~ 546 (630)
|....++..+-...
T Consensus 271 ~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 271 KWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66655555554444
No 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=2.9e-19 Score=167.48 Aligned_cols=222 Identities=13% Similarity=0.048 Sum_probs=178.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHH
Q 006812 211 LELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEV 290 (630)
Q Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 290 (630)
...|.+|...|++++|+.+|++++++.+.. .+.+..+.++.++|.+|...|++++|+.+|++++++.+... +....
T Consensus 41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~ 116 (292)
T 1qqe_A 41 VQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRRG 116 (292)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHHH
Confidence 344667788999999999999999998776 55667789999999999999999999999999999988642 33456
Q ss_pred HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch---
Q 006812 291 AHDRRLLGVIYSGL-EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE--- 366 (630)
Q Consensus 291 ~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--- 366 (630)
+.++.++|.+|... |++++|+.+|++++++....+.......++.++|.++..+|++++|+.+|++++...+....
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 78899999999996 99999999999999998876665566788999999999999999999999999998766542
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 006812 367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE--SMNEFETAISLLKRTLA 439 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~ 439 (630)
....++.++|.++...|++++|+.++++++.+...... ......+..++..+. ..+++++|+..|++++.
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 34557899999999999999999999999887643221 112334556666664 45678888777766543
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=9.8e-19 Score=162.78 Aligned_cols=223 Identities=16% Similarity=0.124 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHH
Q 006812 248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG----LEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~ 323 (630)
.+.++..+|.++...|++++|+.+|+++++ + ++ ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~-----~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--L-----KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T-----TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--C-----CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence 357889999999999999999999999987 1 22 3578899999999 99999999999998875
Q ss_pred cCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHh----hccHHHHHHHHHHH
Q 006812 324 WGLSSELLRAEIDAANMQIA----LGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCN----QEKFADAKRCLEIA 395 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 395 (630)
....++..+|.+|.. .+++++|+.+|+++++.. ...++..+|.+|.. .+++++|+.+++++
T Consensus 72 -----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 72 -----NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp -----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 256788999999999 999999999999999852 24589999999999 99999999999999
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCC
Q 006812 396 CGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGK 467 (630)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~ 467 (630)
++.. ...++..+|.+|.. .+++++|+.+|+++++. + ...++..+|.+|.. .++
T Consensus 141 ~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~----~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 141 CDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----K----DSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHHHTCSSCCC
T ss_pred HhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCCcc
Confidence 8742 23678899999999 99999999999999874 1 23578999999999 999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 006812 468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 523 (630)
+++|+.+|+++++. . + ..++..+|.+|.. .+++++|+.+|++++++
T Consensus 202 ~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 202 FKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 99999999999982 1 2 5688999999999 99999999999999985
No 58
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.84 E-value=6.9e-19 Score=166.31 Aligned_cols=246 Identities=9% Similarity=-0.016 Sum_probs=194.7
Q ss_pred ChHHHHHHHHHHHHHHHHh-hhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhH
Q 006812 128 DPEMTLSFANRALNVLDKD-ERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIM 206 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 206 (630)
++++|.++++++.+..+.. ++...........+...|.+|...|++++|+..|.+++.+.....+ ....
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~ 75 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS----------LFHA 75 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------HHHH
Confidence 8889999999988876532 1101112344556777889999999999999999999999776533 2355
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN 286 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 286 (630)
+.++..+|.+|..+|++++|+.+|++++++.... .+....+.++.++|.+|.. |++++|+.+|++++++.+... +
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~ 150 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--R 150 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--C
Confidence 6788999999999999999999999999998764 4455668899999999999 999999999999999988631 2
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
......++.++|.+|..+|++++|+.+|++++.+....+..+.....+..+|.++...|++++|+..|++++ ..+....
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 335678899999999999999999999999999988877656667788999999999999999999999999 6654432
Q ss_pred -HHHHHHHHHHHHHHhhccHHHHHH
Q 006812 367 -TRALVFISMGKALCNQEKFADAKR 390 (630)
Q Consensus 367 -~~~~~~~~la~~~~~~~~~~~A~~ 390 (630)
.....+..++..+ ..|+.+....
T Consensus 230 ~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 230 SEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2234455566555 4566544443
No 59
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.83 E-value=2.6e-18 Score=162.31 Aligned_cols=249 Identities=13% Similarity=0.042 Sum_probs=197.8
Q ss_pred hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHH
Q 006812 169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSREL 248 (630)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 248 (630)
..|++++|..+++++.+...... -...++ .......+...|.+|...|++++|+.+|.+++++.... .+....
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~----~~~~~~-~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~ 75 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF----MKWKPD-YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHA 75 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS----SSCSCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc----cCCCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHH
Confidence 46788899999998887654210 000112 33445667778899999999999999999999998876 556677
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCCh
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSS 328 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 328 (630)
+.++.++|.+|...|++++|+.+|++++++..... +....+.++.++|.+|.. |++++|+.+|++++.+....+...
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 89999999999999999999999999999987642 334567889999999999 999999999999999988877667
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
....++.++|.+|..+|++++|+.+|++++...+... .....++..+|.++...|++++|+.++++++ +.....
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~--- 228 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS--- 228 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC---
Confidence 7788999999999999999999999999999877653 3345688899999999999999999999998 542211
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHH
Q 006812 407 PEEVADAYSEISMQYESMNEFETAIS 432 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~ 432 (630)
.......+..++..+ ..|+.+....
T Consensus 229 ~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 229 GSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 123344566666655 4667655444
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=1.9e-19 Score=167.97 Aligned_cols=258 Identities=15% Similarity=0.011 Sum_probs=200.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 006812 256 AEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEI 335 (630)
Q Consensus 256 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 335 (630)
+......|++++|+..|+++++..+ ...+....++..+|.++...|++++|+.+|++++.+ .|....++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~ 81 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFN 81 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhccc----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc------CCCcHHHHH
Confidence 3344556899999999999987522 234577889999999999999999999999999987 666788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812 336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS 415 (630)
Q Consensus 336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (630)
.+|.++...|++++|+.++++++...+.+ ..++..+|.++...|++++|+.++++++.+... ......
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~ 149 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--------DPFRSL 149 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------ChHHHH
Confidence 99999999999999999999999976655 348999999999999999999999999886422 112222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHH
Q 006812 416 EISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY 495 (630)
Q Consensus 416 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 495 (630)
.++ ++...|++++|+..+++++.... ... ....++.++...++.++|+..+++++...... .+....
T Consensus 150 ~~~-~~~~~~~~~~A~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 216 (275)
T 1xnf_A 150 WLY-LAEQKLDEKQAKEVLKQHFEKSD-----KEQ---WGWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSE 216 (275)
T ss_dssp HHH-HHHHHHCHHHHHHHHHHHHHHSC-----CCS---THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHhcCC-----cch---HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----cccccH
Confidence 233 34667999999999999887521 111 23457888888999999999999888743321 234467
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQ 559 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 559 (630)
++..+|.++...|++++|+.+|++++.+ +|.. +...+.++...|++++|++.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHN---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTT---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--------Cchh---HHHHHHHHHHHHHHHhhHHHH
Confidence 8999999999999999999999999884 2322 223477788889999988876
No 61
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=5.9e-17 Score=166.05 Aligned_cols=392 Identities=10% Similarity=-0.015 Sum_probs=269.2
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhh-HHHhhccChHHHHH----HHHH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMG-SANYSFKRFSDSLG----YLSK 182 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg-~~~~~~g~~~~A~~----~~~~ 182 (630)
.|.....|...+......| ++++|...|++++...+ + ...+..++ ......|++++|.+ .|++
T Consensus 42 ~P~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p--------~---~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~ 109 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVL--------H---IDLWKCYLSYVRETKGKLPSYKEKMAQAYDF 109 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCC--------C---HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC--------C---hHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 3777889999999999998 99999999999987542 1 22344444 34456788888876 5666
Q ss_pred HHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 006812 183 ANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTA---------MGRREEALEHLQKCLEIKELILEEDSRELGVANR 253 (630)
Q Consensus 183 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (630)
++... +.. + ....+|...+..... .|++++|..+|+++++. +... ....+.
T Consensus 110 al~~~----g~~-----~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~------P~~~-~~~~~~ 169 (530)
T 2ooe_A 110 ALDKI----GME-----I----MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN------PMIN-IEQLWR 169 (530)
T ss_dssp HHHHT----TTS-----T----TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS------CCTT-HHHHHH
T ss_pred HHHHC----CCC-----c----ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc------hhhh-HHHHHH
Confidence 65531 111 1 112444555555544 78999999999999852 1111 111121
Q ss_pred HHHH-------------HHHHhcCHHHHHHHHHHHHHHHhhhc------CCCC----HHHHHHHHHHHHHHhc----ccc
Q 006812 254 DLAE-------------AFVAVLNFKEALPFGLKALEIHKKGL------GHNS----VEVAHDRRLLGVIYSG----LEE 306 (630)
Q Consensus 254 ~la~-------------~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~----~~~~~~~~~la~~~~~----~g~ 306 (630)
.... +....+++..|...+.+...+..... .+.. ......+......... .++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 1111 11234667778777766433322211 1110 0112233322222111 123
Q ss_pred H----HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HhhhcchH
Q 006812 307 H----QKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA-------LGKFE-------EAINTLKGVVR-QTEKESET 367 (630)
Q Consensus 307 ~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~l~-~~~~~~~~ 367 (630)
. ..++..|++++.. .|....++..+|.++.. .|+++ +|+..|++++. ..+..
T Consensus 250 ~~~~~~~a~~~y~~al~~------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~--- 320 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLV------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN--- 320 (530)
T ss_dssp SHHHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---
T ss_pred chhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---
Confidence 2 4778899998886 46678889999999886 79987 89999999997 44433
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
..++..++.++...|++++|...|++++++.. . ....+|..++.++...|++++|...|+++++. .+
T Consensus 321 -~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-----~~ 387 (530)
T 2ooe_A 321 -MLLYFAYADYEESRMKYEKVHSIYNRLLAIED-----I--DPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----AR 387 (530)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-----S--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----TT
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-----c--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----cC
Confidence 45899999999999999999999999987521 1 12358899999999999999999999999873 11
Q ss_pred CCchhHHHHHHHHH-HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 006812 448 QHSEGSVSARIGWL-LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDV 526 (630)
Q Consensus 448 ~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 526 (630)
. ....+...+.+ +...|++++|..+|+++++.. |....++..++.++...|++++|..+|++++...
T Consensus 388 ~--~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-- 455 (530)
T 2ooe_A 388 T--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-- 455 (530)
T ss_dssp C--CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC--
T ss_pred C--chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc--
Confidence 1 23344444444 446899999999999999853 4556688999999999999999999999998742
Q ss_pred hcCCCCHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 527 SLGPHHAD-SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 527 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
+.+|+ ...++...+......|+.+.+..+++++++.++.
T Consensus 456 ---~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 456 ---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp ---CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 23343 3356777788888999999999999999998875
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.1e-16 Score=169.20 Aligned_cols=325 Identities=14% Similarity=0.065 Sum_probs=228.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCC
Q 006812 118 IALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGG 197 (630)
Q Consensus 118 ~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 197 (630)
+|.++...| .+++|..+|+++-... . .+...+...+++++|.++++++.
T Consensus 1055 IA~Iai~lg-lyEEAf~IYkKa~~~~------------~-----A~~VLie~i~nldrAiE~Aervn------------- 1103 (1630)
T 1xi4_A 1055 IANIAISNE-LFEEAFAIFRKFDVNT------------S-----AVQVLIEHIGNLDRAYEFAERCN------------- 1103 (1630)
T ss_pred HHHHHHhCC-CHHHHHHHHHHcCCHH------------H-----HHHHHHHHHhhHHHHHHHHHhcC-------------
Confidence 466666666 7777777777742111 1 11222335566666666665431
Q ss_pred CCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006812 198 SVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALE 277 (630)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 277 (630)
...+|+.+|.++...|++++|++.|.++ ++ ...+..+|.++...|+|++|+++|..+.+
T Consensus 1104 --------~p~vWsqLAKAql~~G~~kEAIdsYiKA----------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1104 --------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----------DD---PSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred --------CHHHHHHHHHHHHhCCCHHHHHHHHHhc----------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1367788999999999999999999774 11 45677889999999999999999988887
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 278 IHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGV 357 (630)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 357 (630)
..+.. .+-..+|.+|.+.+++++ ++.|.. .+.. ..+..+|..+...|+|++|..+|.++
T Consensus 1163 ~~~e~---------~Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1163 KARES---------YVETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred hcccc---------cccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 54321 111237888888888874 333311 2222 45567999999999999999999884
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 358 VRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRT 437 (630)
Q Consensus 358 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 437 (630)
..|..++.++.+.|++++|++.+++|.. ..+|...+.++...|++..|..+...
T Consensus 1222 ------------~ny~rLA~tLvkLge~q~AIEaarKA~n-------------~~aWkev~~acve~~Ef~LA~~cgl~- 1275 (1630)
T 1xi4_A 1222 ------------SNFGRLASTLVHLGEYQAAVDGARKANS-------------TRTWKEVCFACVDGKEFRLAQMCGLH- 1275 (1630)
T ss_pred ------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-------------HHHHHHHHHHHhhhhHHHHHHHHHHh-
Confidence 3788899999999999999999988722 26788888889999999999887664
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChhHHHH
Q 006812 438 LALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE--LDRPQSAAQ 515 (630)
Q Consensus 438 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~ 515 (630)
+.. ....+..++..|...|.|++|+.++++++.+ .+.....+..+|.+|.+ -++..++++
T Consensus 1276 Iiv----------~~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1276 IVV----------HADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hhc----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 221 1235668899999999999999999999873 24455567677777765 356677777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812 516 VFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 516 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 562 (630)
+|...+.+-+-+ ..-+.+..|..+..+|.+-|+++.|...+-+.
T Consensus 1338 ~f~~rini~k~~---r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1338 LFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHhcccchHh---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 777665532111 11244567889999999999999999554444
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=1.4e-19 Score=168.83 Aligned_cols=253 Identities=15% Similarity=-0.002 Sum_probs=195.5
Q ss_pred HhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccch
Q 006812 124 QEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIK 203 (630)
Q Consensus 124 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 203 (630)
..+ ++++|+..|+++++..+ ...+..+.++..+|.++...|++++|+..|++++.+ .
T Consensus 17 ~~~-~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------------~ 73 (275)
T 1xnf_A 17 PTL-QQEVILARMEQILASRA------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----------------R 73 (275)
T ss_dssp CCH-HHHHHHHHHHHHHTSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------C
T ss_pred ccc-hHHHHHHHHHHHHhccc------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----------------C
Confidence 344 89999999999887521 113567889999999999999999999999999998 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812 204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL 283 (630)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (630)
|....++..+|.++...|++++|+.+|++++++. |....++..+|.+|...|++++|+.++++++++.+
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--- 142 (275)
T 1xnf_A 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--- 142 (275)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---
Confidence 2334678899999999999999999999999753 22357899999999999999999999999998654
Q ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
+++. ....+ .+....|++++|+..+.+++... ... . ....++.++...++.++|+..+++++...+.
T Consensus 143 --~~~~---~~~~~-~~~~~~~~~~~A~~~~~~~~~~~---~~~---~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 143 --NDPF---RSLWL-YLAEQKLDEKQAKEVLKQHFEKS---DKE---Q-WGWNIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp --TCHH---HHHHH-HHHHHHHCHHHHHHHHHHHHHHS---CCC---S-THHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred --CChH---HHHHH-HHHHHhcCHHHHHHHHHHHHhcC---Ccc---h-HHHHHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 2322 12222 33466799999999999877751 111 1 1235788888999999999999999887665
Q ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812 364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL 434 (630)
Q Consensus 364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 434 (630)
..+....++..+|.++...|++++|..++++++.+... + +...+.++...|++++|++.+
T Consensus 210 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~-------~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH----N-------FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT----T-------CHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch----h-------HHHHHHHHHHHHHHHhhHHHH
Confidence 55555789999999999999999999999999876311 1 223466778889999998876
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=4.4e-19 Score=162.10 Aligned_cols=221 Identities=17% Similarity=0.155 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812 289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR 368 (630)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 368 (630)
..+..+..+|..+...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++...+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 90 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA---- 90 (243)
T ss_dssp ---------------------CCTTHHHHHTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----
Confidence 44567889999999999999999999998874 56678899999999999999999999999999875543
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 448 (630)
..++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.++++++... +.
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~ 157 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-----EN 157 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----TT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----Cc
Confidence 4588999999999999999999999998875 2334678999999999999999999999999862 22
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
...++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|++++++.
T Consensus 158 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 223 (243)
T 2q7f_A 158 --DTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---- 223 (243)
T ss_dssp --CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC----
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC----
Confidence 2457899999999999999999999999884 34556689999999999999999999999999852
Q ss_pred CCCCHHHHHHHHHHHHHHHhcC
Q 006812 529 GPHHADSIEACQNLSKAYSSMG 550 (630)
Q Consensus 529 ~~~~~~~~~~~~~la~~~~~~g 550 (630)
|+...++..++.+....|
T Consensus 224 ----p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 224 ----PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp ----TTCHHHHHHHTC------
T ss_pred ----cchHHHHHHHHHHHhhcc
Confidence 444456666665554443
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=5e-18 Score=170.36 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccCh-HHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHH
Q 006812 131 MTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRF-SDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAV 209 (630)
Q Consensus 131 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (630)
.....+++++...+..... .+..+.++..+|.++...|++ ++|+.+|++++++ .|....+
T Consensus 79 ~~~~~~~~al~~l~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----------------~p~~~~a 139 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGS---AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL----------------EPELVEA 139 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----------------CTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----------------CCCCHHH
Confidence 3444455555555443222 235678889999999999999 9999999999998 3344578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHh
Q 006812 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAV---------LNFKEALPFGLKALEIHK 280 (630)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~ 280 (630)
++.+|.+|...|++++|+.+|++++++. |. ..++..+|.++... |++++|+.+|++++++.+
T Consensus 140 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 140 WNQLGEVYWKKGDVTSAHTCFSGALTHC--------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTC--------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 8899999999999999999999998542 33 48899999999999 999999999999999744
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHHHHcCCHHH
Q 006812 281 KGLGHNSVEVAHDRRLLGVIYSGL--------EEHQKALEQNELSQKVLKTWGLSS---ELLRAEIDAANMQIALGKFEE 349 (630)
Q Consensus 281 ~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~ 349 (630)
....++.++|.+|... |++++|+.+|++++++ .| ....++.++|.+|...|++++
T Consensus 211 --------~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~~~ 276 (474)
T 4abn_A 211 --------LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESYGE 276 (474)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 2356788999999999 9999999999999998 66 789999999999999999999
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 006812 350 AINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEI 394 (630)
Q Consensus 350 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 394 (630)
|+..|+++++..+.+ ..++..++.++...|++++|+..+.+
T Consensus 277 A~~~~~~al~l~p~~----~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 277 ALEGFSQAAALDPAW----PEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999976655 44889999999999999999886654
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=2e-18 Score=149.95 Aligned_cols=168 Identities=18% Similarity=0.234 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 448 (630)
+.+|+++|.+|...|++++|+.+|++++++. |....++..+|.+|...|++++|+..+.+++.. .+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~ 71 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTT 71 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cch
Confidence 4589999999999999999999999999874 556689999999999999999999999999885 222
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
...++..+|.++...++++.|...+.+++.+ .|....++..+|.+|..+|++++|+..|++++++
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~----- 136 (184)
T 3vtx_A 72 --SAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI----- 136 (184)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----
Confidence 2457889999999999999999999999984 3556678899999999999999999999999984
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
+|....++.++|.+|..+|++++|+.+|++++++.+
T Consensus 137 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 137 ---KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred ---cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 456668999999999999999999999999998644
No 67
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=5.2e-18 Score=155.87 Aligned_cols=202 Identities=12% Similarity=0.001 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812 331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEV 410 (630)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 410 (630)
..++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++... |..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~ 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEMEPKLADEEYRKALASD--------SRN 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCc
Confidence 6677777777777777777777777777754333 3467777788888888888888887777653 233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
..++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.+++++++. .
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~ 171 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------N 171 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------C
Confidence 46677788888888888888888877765 0112223556777888888888888888888887763 2
Q ss_pred ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
|....++..+|.++...|++++|+.++++++.. .|....++..++.++...|++++|..+++++++.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344557778888888888888888888887662 2334456777888888888888888888877765
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=2.5e-18 Score=172.60 Aligned_cols=221 Identities=13% Similarity=0.073 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 006812 175 DSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRR-EEALEHLQKCLEIKELILEEDSRELGVANR 253 (630)
Q Consensus 175 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 253 (630)
.....+++++..++...... +..+.+++.+|.++...|++ ++|+.+|++++++. |....++.
T Consensus 79 ~~~~~~~~al~~l~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--------p~~~~a~~ 141 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGSA---------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--------PELVEAWN 141 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC---------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--------CCCHHHHH
Confidence 44445555555554433222 33467888999999999999 99999999999653 33467899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHHHHHc
Q 006812 254 DLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGL---------EEHQKALEQNELSQKVLKTW 324 (630)
Q Consensus 254 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~ 324 (630)
.+|.+|...|++++|+.+|++++++.+ . ..++.++|.++... |++++|+.+|++++++
T Consensus 142 ~lg~~~~~~g~~~~A~~~~~~al~~~p--------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---- 208 (474)
T 4abn_A 142 QLGEVYWKKGDVTSAHTCFSGALTHCK--------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---- 208 (474)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCC--------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC--------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----
Confidence 999999999999999999999997532 2 37889999999999 9999999999999997
Q ss_pred CCChhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 006812 325 GLSSELLRAEIDAANMQIAL--------GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIAC 396 (630)
Q Consensus 325 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 396 (630)
.|....++..+|.+|... |++++|+..|+++++..+. ....+.++.++|.+|...|++++|+.+|++++
T Consensus 209 --~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 209 --DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 677888999999999999 9999999999999997652 11335699999999999999999999999999
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 397 GILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKR 436 (630)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 436 (630)
++. |....++..++.++...|++++|+..+.+
T Consensus 286 ~l~--------p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 286 ALD--------PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHC--------TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 875 45568899999999999999999886644
No 69
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.80 E-value=1.4e-18 Score=158.67 Aligned_cols=219 Identities=15% Similarity=0.085 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCC
Q 006812 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGL 326 (630)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 326 (630)
..+..+..+|.++...|++++|+.+|+++++.. +....++..+|.++...|++++|+.++++++..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 86 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--------KEDAIPYINFANLLSSVNELERALAFYDKALEL------ 86 (243)
T ss_dssp ---------------------CCTTHHHHHTTC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 346778999999999999999999999998732 233577889999999999999999999999887
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
.+....++..+|.++...|++++|+..++++++..+.+ ..++..+|.++...|++++|+.++++++...
T Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 155 (243)
T 2q7f_A 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELN------- 155 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------
Confidence 56678889999999999999999999999999976554 3478999999999999999999999998764
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF 486 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (630)
|....++..+|.++...|++++|+.++++++.. .+. ...++..+|.++...|++++|+.++++++++
T Consensus 156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----- 222 (243)
T 2q7f_A 156 -ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-----DPG--HADAFYNAGVTYAYKENREKALEMLDKAIDI----- 222 (243)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----
T ss_pred -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Ccc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----
Confidence 334568899999999999999999999999886 222 2457899999999999999999999999984
Q ss_pred CCCCccHHHHHHHHHHHHHH
Q 006812 487 GPKHFGVGYIYNNLGAAYLE 506 (630)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~~~ 506 (630)
.|....++..++.+...
T Consensus 223 ---~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 223 ---QPDHMLALHAKKLLGHH 239 (243)
T ss_dssp ---CTTCHHHHHHHTC----
T ss_pred ---CcchHHHHHHHHHHHhh
Confidence 24444455555554433
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=4.8e-18 Score=147.61 Aligned_cols=169 Identities=20% Similarity=0.233 Sum_probs=131.9
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
+.+|+.+|.+|...|++++|+..|++++++ .|....++..+|.+|...|++++|+..+.+++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----------------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL 68 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 456788888888888888888888888887 2333567778888888888888888888887743
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 006812 237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (630)
. |....++..+|.++...++++.|...+.+++.+.+ ....++..+|.+|...|++++|+..|++
T Consensus 69 ~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 69 D--------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT--------VYADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp C--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C--------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 2 22356677888888888888888888888887543 2245677788888888888888888888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 317 SQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
++++ +|....++.++|.+|..+|++++|+..|+++++..++
T Consensus 133 ~l~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 133 TISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHh------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 8876 6677788888888888888888888888888876543
No 71
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=1.5e-17 Score=149.82 Aligned_cols=206 Identities=11% Similarity=0.076 Sum_probs=145.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
.|....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|..++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------- 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIK------- 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------
Confidence 35566677777777777777777777777777755433 3467777778888888888888887777653
Q ss_pred cHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812 407 PEEVADAYSEISMQYESM-NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES 485 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (630)
|....++..+|.++... |++++|+.++++++. . +..+....++..+|.++...|++++|+.+++++++.
T Consensus 73 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 142 (225)
T 2vq2_A 73 -PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA----D-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---- 142 (225)
T ss_dssp -TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----S-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred -CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----C-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 23345677788888888 888888888887776 1 112223456777888888888888888888887763
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA-DSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
.|....++..+|.++...|++++|+.++++++... | ....++..++.++...|++++|..+++.+.+
T Consensus 143 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 143 ----QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp ----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 23445577788888888888888888888877743 2 2234566777777888888888877777665
Q ss_pred H
Q 006812 565 A 565 (630)
Q Consensus 565 ~ 565 (630)
.
T Consensus 211 ~ 211 (225)
T 2vq2_A 211 N 211 (225)
T ss_dssp H
T ss_pred h
Confidence 4
No 72
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=1.5e-17 Score=152.76 Aligned_cols=204 Identities=14% Similarity=0.011 Sum_probs=176.4
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.+.++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|+++++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 99 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------------DPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3788999999999999999999999999987 222356788999999999999999999999986
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE 315 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (630)
.. |....++..+|.++...|++++|+.++++++. ....+....++..+|.++...|++++|+.+++
T Consensus 100 ~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 100 SD--------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp HC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HC--------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 53 22357889999999999999999999999886 11345567788999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812 316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395 (630)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 395 (630)
++++. .|....++..+|.++...|++++|+..+++++...+.. ...+..++.++...|++++|..+++++
T Consensus 166 ~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 166 KSLRL------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN----ARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99886 45567888999999999999999999999998865433 447889999999999999999999998
Q ss_pred HHHH
Q 006812 396 CGIL 399 (630)
Q Consensus 396 ~~~~ 399 (630)
++..
T Consensus 236 ~~~~ 239 (252)
T 2ho1_A 236 KRLY 239 (252)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 8764
No 73
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=2.1e-16 Score=167.14 Aligned_cols=314 Identities=14% Similarity=0.093 Sum_probs=229.5
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
...+|..+|.++...|++++|+..|.++-. ...|..+|.++...|+|++|+++|..+.+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKAdD---------------------~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKADD---------------------PSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhcCC---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356788999999999999999999977611 25677899999999999999999999886
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNE 315 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 315 (630)
..+. ..+...+|.+|.+.+++++ ++.|.+ .+.. ..+..+|..+...|+|++|..+|.
T Consensus 1163 ~~~e---------~~Idt~LafaYAKl~rlee-le~fI~------------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1163 KARE---------SYVETELIFALAKTNRLAE-LEEFIN------------GPNN-AHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred hccc---------ccccHHHHHHHHhhcCHHH-HHHHHh------------CCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4421 1123348999999999885 443321 1112 345579999999999999999998
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812 316 LSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395 (630)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 395 (630)
++ ..+..++.++..+|++++|++.++++.. ..+|...+.++...|+|..|..+...
T Consensus 1220 kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n---------~~aWkev~~acve~~Ef~LA~~cgl~- 1275 (1630)
T 1xi4_A 1220 NV--------------SNFGRLASTLVHLGEYQAAVDGARKANS---------TRTWKEVCFACVDGKEFRLAQMCGLH- 1275 (1630)
T ss_pred hh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC---------HHHHHHHHHHHhhhhHHHHHHHHHHh-
Confidence 74 4678899999999999999999999833 35899999999999999999987663
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH--cCChhhHHH
Q 006812 396 CGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL--TGKVPQAIP 473 (630)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~ 473 (630)
+. ..+..+..++..|...|.+++|+.+++.++.+. ......+..+|.+|.+ -++..++++
T Consensus 1276 Ii-----------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-------raH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1276 IV-----------VHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hh-----------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------hhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 21 122455688999999999999999999998762 2223466677777765 466777888
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH------HHHhcCCCCHHHHHHHHHHHHHHH
Q 006812 474 YLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI------MDVSLGPHHADSIEACQNLSKAYS 547 (630)
Q Consensus 474 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~la~~~~ 547 (630)
+|...+.+-+-. .--..+..|..+..+|.+-|+++.|+...-+.... +.... ..+...+.++.....|.
T Consensus 1338 ~f~~rini~k~~---r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1338 LFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHhcccchHh---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHHHH
Confidence 887766532111 11245567889999999999999999544333211 11111 22344567787788777
Q ss_pred hcC---------------CHHHHHHHHH
Q 006812 548 SMG---------------SYTLAIEFQQ 560 (630)
Q Consensus 548 ~~g---------------~~~~A~~~~~ 560 (630)
..+ ++..+...+.
T Consensus 1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 666 6666666665
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=2e-18 Score=179.49 Aligned_cols=172 Identities=16% Similarity=0.119 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812 366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445 (630)
Q Consensus 366 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 445 (630)
|..+.+++++|.+|..+|++++|+.+|++++++. |+...++.++|.+|..+|++++|+.+|++++++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----- 72 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----- 72 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 3445566666666666666666666666666653 344566777777777777777777777777765
Q ss_pred CCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 446 QAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
.++ ...++.++|.++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+..|++++++
T Consensus 73 ~P~--~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-- 140 (723)
T 4gyw_A 73 SPT--FADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-- 140 (723)
T ss_dssp CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 211 2346677777777777777777777777763 3455566777777777777777777777777764
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 526 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
+|+...++.++|.+|..+|++++|.+.+++++++...
T Consensus 141 ------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 141 ------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp ------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 2444466777777777777777777777777766554
No 75
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.78 E-value=5.2e-17 Score=146.26 Aligned_cols=206 Identities=13% Similarity=0.007 Sum_probs=175.9
Q ss_pred hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233 (630)
Q Consensus 154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (630)
+..+.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS----------------DPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----------------CccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 467788899999999999999999999999987 2223467888999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHH
Q 006812 234 LEIKELILEEDSRELGVANRDLAEAFVAV-LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALE 312 (630)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (630)
++.. |....++..+|.++... |++++|+.+++++++ . +..+....++..+|.++...|++++|+.
T Consensus 69 ~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 69 LSIK--------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-----PTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp HHHC--------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-----TTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhC--------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-----cCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8653 22356789999999999 999999999999987 1 1344556788899999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-hcchHHHHHHHHHHHHHHhhccHHHHHHH
Q 006812 313 QNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTE-KESETRALVFISMGKALCNQEKFADAKRC 391 (630)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 391 (630)
+++++++. .|....++..+|.++...|++++|+..+++++...+ .. ...+..++.++...|++++|..+
T Consensus 135 ~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 135 YLKRSLAA------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ----ADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp HHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999886 556678899999999999999999999999999766 33 23567888899999999999999
Q ss_pred HHHHHHHH
Q 006812 392 LEIACGIL 399 (630)
Q Consensus 392 ~~~a~~~~ 399 (630)
++.+....
T Consensus 205 ~~~~~~~~ 212 (225)
T 2vq2_A 205 EAQLQANF 212 (225)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 98876653
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=8e-18 Score=175.03 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=113.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 327 SSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 327 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
.|+.+.++.++|.+|..+|++++|+..|+++++..+.+ +.++.++|.+|..+|++++|+.+|++++++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------- 73 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRIS------- 73 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 35666666666666666666666666666666654433 3366667777777777777777777766653
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF 486 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (630)
|+.+.++.++|.++..+|++++|++.|++++++ .+. ...++.++|.+|..+|++++|+..|++++++
T Consensus 74 -P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l----- 140 (723)
T 4gyw_A 74 -PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPA--FADAHSNLASIHKDSGNIPEAIASYRTALKL----- 140 (723)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 445566777777777777777777777777765 211 2346677777777777777777777777763
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 006812 487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDV 526 (630)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 526 (630)
.|+...++.++|.++..+|++++|.+.+++++++...
T Consensus 141 ---~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 141 ---KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp ---CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ---CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 3445556777777777777777777777777766543
No 77
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.77 E-value=1.5e-17 Score=164.34 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=143.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccH
Q 006812 415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGV 493 (630)
Q Consensus 415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 493 (630)
...+..+..+|++++|+.++++++++.++..+++|+. +.++.+||.+|..+|+|++|+.++++++++.++.+|++||.+
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3445557789999999999999999999999999997 677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 494 GYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 494 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
+.++++||.+|..+|++++|+.+|++|+++....+|++||.+.++..+++.++..+|.+++|...|+++.+..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.76 E-value=3.6e-17 Score=147.58 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-hcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTE-KESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
+..+..+|.++...|++++|+..|++++...+ .+. .++..+|.++...|++++|+.++++++... |.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~ 74 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKN--------YN 74 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------cc
Confidence 47888999999999999999999999999876 332 377779999999999999999999998754 56
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-----hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-----GSVSARIGWLLLLTGKVPQAIPYLESAAERLKE 484 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 484 (630)
...++..+|.+|...|++++|+..+++++.+. +..+. ..++..+|.++...|++++|+.+|+++++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---- 145 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---- 145 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh----
Confidence 77899999999999999999999999999873 33332 25689999999999999999999999997
Q ss_pred hcCCCCcc--HHHHHHHHHHHHHHcCCh---------------------------hHHHHHHHHHHHHHHHhcCCCCHHH
Q 006812 485 SFGPKHFG--VGYIYNNLGAAYLELDRP---------------------------QSAAQVFAFAKDIMDVSLGPHHADS 535 (630)
Q Consensus 485 ~~~~~~~~--~~~~~~~l~~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~ 535 (630)
.+|. ...++.++|.+|...|+. ++|+.+|++++++. |+.
T Consensus 146 ----~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~--------p~~ 213 (228)
T 4i17_A 146 ----VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS--------PNR 213 (228)
T ss_dssp ----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------TTC
T ss_pred ----cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CCC
Confidence 4577 788999999999999988 88888888888852 333
Q ss_pred HHHHHHHHHHH
Q 006812 536 IEACQNLSKAY 546 (630)
Q Consensus 536 ~~~~~~la~~~ 546 (630)
..+...++.+.
T Consensus 214 ~~~~~~l~~i~ 224 (228)
T 4i17_A 214 TEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555554
No 79
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.75 E-value=5.2e-17 Score=149.83 Aligned_cols=208 Identities=15% Similarity=0.061 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcC
Q 006812 205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLG 284 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 284 (630)
.....++.+|..+...|++++|+..|+++++.. ++++....++..+|.+|...|++++|+..|+++++..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---- 83 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---- 83 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC----
Confidence 345678899999999999999999999988543 45555688999999999999999999999999999765
Q ss_pred CCCHHHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHHHHcCCChhHHHHH--------------HHHHHHHH
Q 006812 285 HNSVEVAHDRRLLGVIYSG--------LEEHQKALEQNELSQKVLKTWGLSSELLRAE--------------IDAANMQI 342 (630)
Q Consensus 285 ~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~la~~~~ 342 (630)
+++....+++.+|.++.. .|++++|+..|++++... ...+....+. ..+|.+|.
T Consensus 84 -~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 84 -IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp -TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999 999999999999988762 2223333343 88999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh----------ccHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Q 006812 343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ----------EKFADAKRCLEIACGILDKKETISPEEVAD 412 (630)
Q Consensus 343 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 412 (630)
..|++++|+..|++++...+... ....++..+|.+|... |++++|+..++++++... +++....
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~ 233 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTP-WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-----DSPLLRT 233 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTST-THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----TCTHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----CChHHHH
Confidence 99999999999999999776543 2466899999999977 999999999999988753 3356677
Q ss_pred HHHHHHHHHHHcCCHHHHH
Q 006812 413 AYSEISMQYESMNEFETAI 431 (630)
Q Consensus 413 ~~~~la~~~~~~g~~~~A~ 431 (630)
+...++.++...++++++.
T Consensus 234 a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 234 AEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 7888888888877776543
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.75 E-value=6.3e-17 Score=149.29 Aligned_cols=208 Identities=10% Similarity=0.010 Sum_probs=169.6
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
..+..++.+|..++..|++++|+..|++++.. .|. .+....+++.+|.++...|++++|+..|++++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---------GRT----HEWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---------CSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------CCC----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 45677889999999999999999999999886 222 22335788899999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH------------
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVA--------VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDR------------ 294 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------ 294 (630)
+.. ++++....+++.+|.++.. .|++++|+..|+++++..+. ++....++
T Consensus 80 ~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~a~~~~~~~~~~~~~ 149 (261)
T 3qky_A 80 QIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-----HELVDDATQKIRELRAKLAR 149 (261)
T ss_dssp HHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-----CTTHHHHHHHHHHHHHHHHH
T ss_pred HHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-----chhHHHHHHHHHHHHHHHHH
Confidence 764 4556677899999999999 99999999999999987653 33333333
Q ss_pred --HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHhh
Q 006812 295 --RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIAL----------GKFEEAINTLKGVVRQTE 362 (630)
Q Consensus 295 --~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~~l~~~~ 362 (630)
..+|.+|...|++++|+..|+++++. ....+....++..+|.+|... |++++|+..|+++++..+
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDA---YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 78999999999999999999988875 222344788999999999977 999999999999999877
Q ss_pred hcchHHHHHHHHHHHHHHhhccHHHHH
Q 006812 363 KESETRALVFISMGKALCNQEKFADAK 389 (630)
Q Consensus 363 ~~~~~~~~~~~~la~~~~~~~~~~~A~ 389 (630)
.++ ....+...++.++...++++++.
T Consensus 227 ~~~-~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 227 DSP-LLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp TCT-HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCh-HHHHHHHHHHHHHHHHHHhhhhh
Confidence 554 33556777788887777776543
No 81
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.73 E-value=8.3e-16 Score=144.25 Aligned_cols=195 Identities=13% Similarity=0.078 Sum_probs=159.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES--ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
.....+...+..+...|++++|+..+.++++..+... ......+..+|.++...|++++|+.++++++.+..... +
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~ 150 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--D 150 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--C
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--c
Confidence 3344556678888999999999999999988665432 23345667799999999999999999999987654332 3
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF 486 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (630)
....+.++.++|.+|...|++++|+.+|++++++.+...+.......++.++|.+|..+|++++|+.++++++++....
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~- 229 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI- 229 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-
Confidence 3346779999999999999999999999999999887754322234688999999999999999999999999987543
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHHHHh
Q 006812 487 GPKHFGVGYIYNNLGAAYLELDRPQSA-AQVFAFAKDIMDVS 527 (630)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~~~~ 527 (630)
......+.++.++|.+|..+|++++| ..+|++++.+.+..
T Consensus 230 -~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 230 -NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp -TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 34556788999999999999999999 88899999988764
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.73 E-value=2.9e-16 Score=141.60 Aligned_cols=198 Identities=13% Similarity=0.048 Sum_probs=155.2
Q ss_pred HHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 158 MCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK 237 (630)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 237 (630)
..++.+|.++...|++++|+..|++++.+... ....+++.+|.++...|++++|+.+|+++++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 71 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---------------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK- 71 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC---------------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-
Confidence 67889999999999999999999999998210 11256667999999999999999999999843
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH----HHHHHHHHHHHHHhccccHHHHHHH
Q 006812 238 ELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV----EVAHDRRLLGVIYSGLEEHQKALEQ 313 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~ 313 (630)
.|....++..+|.+|...|++++|+..+++++++.+. ++ ..+.++..+|.++...|++++|+.+
T Consensus 72 -------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 139 (228)
T 4i17_A 72 -------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-----NATIEKLYAIYYLKEGQKFQQAGNIEKAEEN 139 (228)
T ss_dssp -------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 3555788999999999999999999999999987653 32 3446789999999999999999999
Q ss_pred HHHHHHHHHHcCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHH
Q 006812 314 NELSQKVLKTWGLSSE--LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRC 391 (630)
Q Consensus 314 ~~~a~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 391 (630)
|++++++ .|. ...++.++|.+|...|+. .+.++......... ...+......+.+++|+.+
T Consensus 140 ~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~A~~~ 202 (228)
T 4i17_A 140 YKHATDV------TSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKE------KYASEKAKADAAFKKAVDY 202 (228)
T ss_dssp HHHHTTS------SCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc------CCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHH------HHHHHHHHHHHHHHHHHHH
Confidence 9998876 677 889999999999877654 33333333222211 1123334456778888888
Q ss_pred HHHHHHHHH
Q 006812 392 LEIACGILD 400 (630)
Q Consensus 392 ~~~a~~~~~ 400 (630)
+++++++..
T Consensus 203 ~~~a~~l~p 211 (228)
T 4i17_A 203 LGEAVTLSP 211 (228)
T ss_dssp HHHHHHHCT
T ss_pred HHHHhhcCC
Confidence 888887654
No 83
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.73 E-value=1.5e-16 Score=157.10 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=143.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-
Q 006812 373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE- 451 (630)
Q Consensus 373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 451 (630)
...+..+..+|+|++|+..+++++++..+..+++||..+.++.++|.+|..+|+|++|+.++++++++.++..|++||.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3445567789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
+..+++||.+|..+|++++|+.+|++|+++.+..+|++||.++....+++.++..++.+++|...|.++.+-.
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999997644
No 84
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.7e-15 Score=151.37 Aligned_cols=243 Identities=11% Similarity=0.053 Sum_probs=197.8
Q ss_pred HHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCC-CccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 006812 161 QVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGS-VEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL 239 (630)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 239 (630)
...|..+...|+|++|++.|.++++..+...+...... ..........++..+|.+|...|++++|++++.+++.+...
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34677788999999999999999987443322110000 00112234456889999999999999999999999988765
Q ss_pred HhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 006812 240 ILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQK 319 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 319 (630)
. .+......+...+|.++...|++++|+.++++++.+..... +....+.++.++|.+|...|++++|+.++.+++.
T Consensus 88 ~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 88 F--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp S--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred c--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 4 33444566788899999999999999999999999988653 4456778899999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 006812 320 VLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE---SETRALVFISMGKALCNQEKFADAKRCLEIAC 396 (630)
Q Consensus 320 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 396 (630)
.....++.+....++..++.+|...|++++|..++++++...... +...+..+..+|.++...+++++|..++.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 988888889999999999999999999999999999999876553 23457788899999999999999999999999
Q ss_pred HHHHhhcCCCc
Q 006812 397 GILDKKETISP 407 (630)
Q Consensus 397 ~~~~~~~~~~~ 407 (630)
...........
T Consensus 244 ~~~~~~~~~~~ 254 (434)
T 4b4t_Q 244 ESYHNLTTHNS 254 (434)
T ss_dssp HHHHHTTTSSC
T ss_pred HHhhhhhhhhh
Confidence 98876654444
No 85
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.72 E-value=3.1e-16 Score=147.16 Aligned_cols=193 Identities=13% Similarity=0.078 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcH
Q 006812 331 LRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR--ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPE 408 (630)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 408 (630)
...+...+..+...|++++|+..+++++...+..+... ...+..+|.++...+++++|+.++++++.+..... +..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~--~~~ 152 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--CTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--cHH
Confidence 34444557778889999999999999887554433322 44556789999999999999999999998543322 333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812 409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488 (630)
Q Consensus 409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (630)
..+.++.++|.+|...|++++|+.+|++++++.+...+.......++.++|.+|..+|++++|+.++++++++.... .
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~ 230 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--N 230 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--C
Confidence 55778999999999999999999999999999888744333336688999999999999999999999999988765 3
Q ss_pred CCccHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHh
Q 006812 489 KHFGVGYIYNNLGAAYLELDR-PQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 489 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~ 527 (630)
+.+..+.++.++|.+|..+|+ +++|+.+|++|+.+.+..
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 456678899999999999995 699999999999998765
No 86
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.71 E-value=3.3e-15 Score=131.90 Aligned_cols=191 Identities=13% Similarity=0.062 Sum_probs=156.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812 218 TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL 297 (630)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (630)
...|++++|...++... .+.+..+.++..+|.++...|++++|+.++++++.+..... +.+..+.++.++
T Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence 46789999998554432 33346688999999999999999999999999999988642 456778899999
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHH
Q 006812 298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSS-ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFIS 374 (630)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~ 374 (630)
|.++...|++++|+.++++++.+.+..++.+ ....++.++|.++...|++++|+.++++++...... ....+.++..
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999999999999999888664 788899999999999999999999999999876553 3344677899
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 006812 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ 420 (630)
Q Consensus 375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 420 (630)
+|.++...|++++|..++++++.+..... ++...+.+...++.+
T Consensus 153 la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccch
Confidence 99999999999999999999999987764 334455555555543
No 87
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.71 E-value=2e-15 Score=133.40 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=153.2
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812 342 IALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQY 421 (630)
Q Consensus 342 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 421 (630)
+..|++++|...++.... ++...+.++..+|.++...|++++|+.++++++.+..... +++..+.++.++|.++
T Consensus 3 ~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA----HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVGMVE 76 (203)
T ss_dssp ----CHHHHHHHHHHHHT----STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHH
Confidence 457888888885544322 3445577999999999999999999999999999887654 4567889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 006812 422 ESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLG 501 (630)
Q Consensus 422 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 501 (630)
...|++++|+.++++++.+.+...+.......++.++|.++...|++++|+.++++++.+.... .+....+.++.++|
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la 154 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLG 154 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHH
Confidence 9999999999999999999887642222346678999999999999999999999999987664 23445567789999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006812 502 AAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKA 545 (630)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 545 (630)
.++...|++++|..++++++.+..+.- +......++..++.+
T Consensus 155 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccch
Confidence 999999999999999999999987752 223344555555544
No 88
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.2e-14 Score=145.12 Aligned_cols=236 Identities=12% Similarity=0.084 Sum_probs=195.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCC---------CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 006812 252 NRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHN---------SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLK 322 (630)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 322 (630)
....|..+...|+|++|++.|.++++..+...... ......++..+|.+|...|++++|++++.+++.+..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34457778889999999999999998655422110 123446788999999999999999999999999988
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 006812 323 TWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKRCLEIACGILD 400 (630)
Q Consensus 323 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 400 (630)
..+.......+...++.++...|++++|+.++++++...... ....+.++..+|.+|...|++++|..++++++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 776666666778889999999999999999999999877654 344578899999999999999999999999988776
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 401 KKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 401 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
... +.+....++..+|.+|...|++++|..++++++.+......+......++..+|.++...|++++|..+|.++++
T Consensus 167 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 544 456788999999999999999999999999999998887543333356778999999999999999999999999
Q ss_pred HHHHhcCCC
Q 006812 481 RLKESFGPK 489 (630)
Q Consensus 481 ~~~~~~~~~ 489 (630)
.........
T Consensus 245 ~~~~~~~~~ 253 (434)
T 4b4t_Q 245 SYHNLTTHN 253 (434)
T ss_dssp HHHHTTTSS
T ss_pred Hhhhhhhhh
Confidence 887764333
No 89
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.70 E-value=1e-15 Score=143.60 Aligned_cols=196 Identities=9% Similarity=-0.118 Sum_probs=159.0
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
.....+...+..+...|++++|+..+++++... +..++ .......+..+|.++...|++++|+.+|++++
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~---------~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al 142 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE---------EYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------CCCHH-HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc---------cCChH-HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 344455566788899999999999999988741 11112 12234566679999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (630)
++.... .+....+.++.++|.+|...|++++|+.+|+++++..... +.+.+..+.+++++|.+|..+|++++|+.++
T Consensus 143 ~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 143 NQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HTCCCC--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhccc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 754322 3334557789999999999999999999999999988764 2356677889999999999999999999999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhh
Q 006812 315 ELSQKVLKTWGLSSELLRAEIDAANMQIALG-KFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~ 363 (630)
++++++....+.......++.++|.+|..+| .+++|+.++++++.+...
T Consensus 220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 9999999888877888889999999999999 469999999998887654
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.70 E-value=4.3e-16 Score=163.42 Aligned_cols=224 Identities=13% Similarity=-0.014 Sum_probs=178.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVV--------RQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGIL 399 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 399 (630)
|.........+ ...|++++|+..+++++ +..+ ....++..+|.++...|++++|+..++++++..
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS----ESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT----TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc----cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 33334444444 78999999999999998 4333 335589999999999999999999999999876
Q ss_pred HhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 006812 400 DKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAA 479 (630)
Q Consensus 400 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 479 (630)
|....+++++|.++...|++++|+..|++++++ .+. ...++.++|.++..+|++++ +.+|++++
T Consensus 464 --------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~--~~~~~~~lg~~~~~~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 464 --------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPG--ELAPKLALAATAELAGNTDE-HKFYQTVW 527 (681)
T ss_dssp --------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STT--CSHHHHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred --------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--ChHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence 556689999999999999999999999999997 222 24588999999999999999 99999999
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH-HHH
Q 006812 480 ERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA-IEF 558 (630)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~ 558 (630)
++ +|....+++++|.++..+|++++|+..|+++++ .+|+...++.++|.++...|+.+++ ...
T Consensus 528 ~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 591 (681)
T 2pzi_A 528 ST--------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPP--------TSRHFTTARLTSAVTLLSGRSTSEVTEEQ 591 (681)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--------TSTTHHHHHHHHHHHTC-------CCHHH
T ss_pred Hh--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--------cCcccHHHHHHHHHHHHccCCCCCCCHHH
Confidence 84 466677999999999999999999999999988 5688889999999999888887777 788
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812 559 QQRAIDAWESHGPSAQDELREARRLLEQLKIK 590 (630)
Q Consensus 559 ~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~ 590 (630)
+++|++.+....+.......-...+++.....
T Consensus 592 ~~~A~~~l~~~~~~~~~~~~l~~~ll~~~l~~ 623 (681)
T 2pzi_A 592 IRDAARRVEALPPTEPRVLQIRALVLGGALDW 623 (681)
T ss_dssp HHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999988887666555554445555554443
No 91
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=1.5e-17 Score=157.66 Aligned_cols=287 Identities=16% Similarity=0.138 Sum_probs=131.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
+.++|.+++++. + ...+|..+|.++...|++++|++.|.++-. .
T Consensus 18 ~ld~A~~fae~~----------~-----~~~vWs~La~A~l~~g~~~eAIdsfika~D---------------------~ 61 (449)
T 1b89_A 18 NLDRAYEFAERC----------N-----EPAVWSQLAKAQLQKGMVKEAIDSYIKADD---------------------P 61 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC----------C-----ChHHHHHHHHHHHHcCCHHHHHHHHHcCCC---------------------H
Confidence 889999998884 1 123788999999999999999999976422 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
..+..++..+...|++++|+.+++.+.+.. +. +.+...++.+|.+.|++.++.++++.
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~------------- 119 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING------------- 119 (449)
T ss_dssp --------------------------------------------------------CHHHHTTTTTC-------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------
Confidence 356678889999999999999998877531 11 45677889999999999998877742
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchH
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESET 367 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 367 (630)
|.. .++..+|..+...|.|++|..+|.++ ..+..+|.++..+|++++|++.++++. +
T Consensus 120 pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~--- 176 (449)
T 1b89_A 120 PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN-----S--- 176 (449)
T ss_dssp C-----------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----C---
T ss_pred CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC-----C---
Confidence 111 37899999999999999999999864 367889999999999999999999982 1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
..+|..++.++...|+++.|..+... +. .+|+. ...+..+|.+.|++++|+.++++++.+ +
T Consensus 177 -~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l-----e- 237 (449)
T 1b89_A 177 -TRTWKEVCFACVDGKEFRLAQMCGLH---IV------VHADE---LEELINYYQDRGYFEELITMLEAALGL-----E- 237 (449)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHTTTT---TT------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS-----T-
T ss_pred -chhHHHHHHHHHHcCcHHHHHHHHHH---HH------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC-----c-
Confidence 44888999999999999999766553 11 22333 335888999999999999999999875 2
Q ss_pred CCchhHHHHHHHHHHHH--cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH
Q 006812 448 QHSEGSVSARIGWLLLL--TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA 518 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 518 (630)
.....++..+|.+|.+ .++..+.++.|...+.+-+-. .--..+..|..+..+|...++|+.|+...-
T Consensus 238 -~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~---~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 238 -RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp -TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH---HHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 2234577777877765 456666777666554432210 000223357788999999999999986543
No 92
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.70 E-value=1e-15 Score=143.69 Aligned_cols=195 Identities=9% Similarity=-0.122 Sum_probs=156.5
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
....+...+..+...|++++|+..+++++...... .........++.+|.++...|++++|+.+++++++
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH----------PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC----------HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC----------hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34455668889999999999999999998863221 11223445667899999999999999999999997
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH-HHHHHHHHHHHHhccccHHHHHHHH
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE-VAHDRRLLGVIYSGLEEHQKALEQN 314 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~ 314 (630)
+.... .+....+.+++++|.+|...|++++|+.+|++++++..... +.+. ...+++++|.+|..+|++++|+.++
T Consensus 144 ~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 144 QQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp TCCCS--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcC--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 65432 23344578999999999999999999999999999877642 2333 3378999999999999999999999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhhhc
Q 006812 315 ELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEA-INTLKGVVRQTEKE 364 (630)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~~~~ 364 (630)
++++.+....+.......++.++|.+|...|++++| ..++++++......
T Consensus 220 ~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 999999877666677788889999999999999999 77788888766543
No 93
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.3e-15 Score=143.97 Aligned_cols=224 Identities=11% Similarity=0.070 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HhhhcchHHHHHH
Q 006812 308 QKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA-------LGKF-------EEAINTLKGVVR-QTEKESETRALVF 372 (630)
Q Consensus 308 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~l~-~~~~~~~~~~~~~ 372 (630)
++|+..|++++.. .|....++..+|.++.. .|++ ++|+..|++++. ..+.. ..+|
T Consensus 33 ~~a~~~~~~al~~------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLV------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLY 102 (308)
T ss_dssp HHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHH
T ss_pred HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc----HHHH
Confidence 6788889988886 57778888888888864 5885 999999999998 44433 4489
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812 373 ISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVAD-AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE 451 (630)
Q Consensus 373 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 451 (630)
..+|.++...|++++|...|++++++. |.... +|..+|.++...|++++|...|+++++. .+. .
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~--~ 167 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIE--------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ART--R 167 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSS--------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTC--C
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc--------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC--C
Confidence 999999999999999999999998753 22223 8899999999999999999999999874 121 2
Q ss_pred hHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812 452 GSVSARIGWLLLL-TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530 (630)
Q Consensus 452 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 530 (630)
..++...+.+... .|++++|+.+|+++++.. |.....+..+|.++...|++++|...|++++... .
T Consensus 168 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----~ 234 (308)
T 2ond_A 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----S 234 (308)
T ss_dssp THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----S
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-----C
Confidence 3455555555433 799999999999999853 4556788999999999999999999999998831 0
Q ss_pred CCHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 531 HHAD-SIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 531 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
..|+ ...++..++..+...|++++|..+++++++.++..
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 1332 45688889999999999999999999999887653
No 94
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=7.1e-15 Score=138.91 Aligned_cols=225 Identities=10% Similarity=-0.014 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhh-------ccCh-------HHHHHHHHHHHH-HHhHhhhcC
Q 006812 130 EMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYS-------FKRF-------SDSLGYLSKANR-MLGRLEEEG 194 (630)
Q Consensus 130 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~ 194 (630)
++|+..|++++...+. .+.++..+|..+.. .|++ ++|+..|++|+. +
T Consensus 33 ~~a~~~~~~al~~~p~----------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------- 94 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH----------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------- 94 (308)
T ss_dssp HHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------
T ss_pred HHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------
Confidence 6899999999987633 35667778877763 5886 899999999988 4
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006812 195 LGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLK 274 (630)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (630)
.|....++..+|.++...|++++|...|++++++. +.++. .++..+|.++...|++++|...|++
T Consensus 95 --------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 95 --------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDPT--LVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp --------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SSCTH--HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred --------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----ccCcc--HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 23335678899999999999999999999999632 22221 2789999999999999999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 006812 275 ALEIHKKGLGHNSVEVAHDRRLLGVIYS-GLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINT 353 (630)
Q Consensus 275 al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 353 (630)
+++..+ .. ..++...+.+.. ..|++++|+..|+++++. .|.....+..++.++...|++++|..+
T Consensus 160 a~~~~p-----~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~A~~~ 225 (308)
T 2ond_A 160 AREDAR-----TR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYVLAYIDYLSHLNEDNNTRVL 225 (308)
T ss_dssp HHTSTT-----CC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhcCC-----CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 997533 22 233444454433 379999999999999987 455678889999999999999999999
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812 354 LKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDK 401 (630)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 401 (630)
|++++....-.+.....+|..++..+...|++++|...++++++....
T Consensus 226 ~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 999998521111122457888899999999999999999999887743
No 95
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=6.7e-17 Score=153.27 Aligned_cols=296 Identities=15% Similarity=0.092 Sum_probs=133.5
Q ss_pred HHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Q 006812 165 SANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEED 244 (630)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 244 (630)
.+....|+.++|.+++++.-. ..+|..+|.++...|++++|++.|.++- +
T Consensus 11 ~ll~~~~~ld~A~~fae~~~~---------------------~~vWs~La~A~l~~g~~~eAIdsfika~---------D 60 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERCNE---------------------PAVWSQLAKAQLQKGMVKEAIDSYIKAD---------D 60 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhCCC---------------------hHHHHHHHHHHHHcCCHHHHHHHHHcCC---------C
Confidence 344567888888888877511 1478899999999999999999997641 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc
Q 006812 245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW 324 (630)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 324 (630)
...+..++..+...|++++|+.+++.+.+..+ + ..+...++.+|.+.|++.++.+++.
T Consensus 61 ----~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~--------~-~~i~~~Li~~Y~Klg~l~e~e~f~~--------- 118 (449)
T 1b89_A 61 ----PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--------E-SYVETELIFALAKTNRLAELEEFIN--------- 118 (449)
T ss_dssp -------------------------------------------------------------CHHHHTTTTT---------
T ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc--------c-chhHHHHHHHHHHhCCHHHHHHHHc---------
Confidence 34688888999999999999999998876321 1 3446678999999999999887774
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcC
Q 006812 325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKET 404 (630)
Q Consensus 325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 404 (630)
.|. ..++..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.+.++.
T Consensus 119 --~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------- 175 (449)
T 1b89_A 119 --GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN-------- 175 (449)
T ss_dssp --CC-----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------
T ss_pred --CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHcC--------
Confidence 232 348999999999999999999999975 378899999999999999999999871
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812 405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKE 484 (630)
Q Consensus 405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 484 (630)
...+|...+.++...|+++.|..+... + . .+|+ -...++.+|.+.|++++|+.++++++.+
T Consensus 176 -----~~~~Wk~v~~aCv~~~ef~lA~~~~l~-------L-~-~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~l--- 236 (449)
T 1b89_A 176 -----STRTWKEVCFACVDGKEFRLAQMCGLH-------I-V-VHAD--ELEELINYYQDRGYFEELITMLEAALGL--- 236 (449)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHTTTT-------T-T-TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTS---
T ss_pred -----CchhHHHHHHHHHHcCcHHHHHHHHHH-------H-H-hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCC---
Confidence 226788889999999999999665543 1 1 2332 3456888999999999999999999872
Q ss_pred hcCCCCccHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812 485 SFGPKHFGVGYIYNNLGAAYLEL--DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 485 ~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 562 (630)
.+....++..||.+|.+- ++..++++.|...+.+.+-+ .--+....|..+..+|..-++++.|...+-+.
T Consensus 237 -----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~---~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 237 -----ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp -----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH---HHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred -----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 244455777788777653 45566666665444332100 00022356888999999999999998765544
No 96
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=2.6e-15 Score=130.46 Aligned_cols=170 Identities=20% Similarity=0.204 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 006812 368 RALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA 447 (630)
Q Consensus 368 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 447 (630)
....+..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.++++++.. .+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~ 73 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----AP 73 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC
Confidence 35577778888888888888888887765432 233567788888888888888888888888876 11
Q ss_pred CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812 448 QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 527 (630)
....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 74 --~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 140 (186)
T 3as5_A 74 --DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--- 140 (186)
T ss_dssp --TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred --CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---
Confidence 12457788888888889999999888888874 24445678888888999999999999998888742
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 528 LGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 528 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
|....++..+|.++...|++++|..++++++++.+.
T Consensus 141 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 141 -----PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred -----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 333468888899999999999999999988877654
No 97
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.65 E-value=2.5e-14 Score=121.17 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812 204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL 283 (630)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (630)
...+.++..+|.++...|++++|+.++++++++.+.. .+....+.++..+|.++...|++++|+.++++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~- 82 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL- 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Confidence 4556788899999999999999999999999998875 5566777899999999999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
.+.+....++.++|.++...|++++|+.++++++.+....+..+....++..+|.++...|++++|+.+++++++....
T Consensus 83 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 83 -KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2445567788899999999999999999999999998887777777888888888888889999888888888876543
No 98
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.64 E-value=2.1e-14 Score=121.58 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=137.7
Q ss_pred hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233 (630)
Q Consensus 154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (630)
...+.++..+|.++...|++++|+.++++++.+.+...+ ......++..+|.++...|++++|+.+++++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD----------KAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356788999999999999999999999999999776533 2355678899999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHH
Q 006812 234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQ 313 (630)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (630)
+++.+.. .+.+....++..+|.++...|++++|+.++++++++.+... +.+....++..+|.++...|++++|+.+
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 76 LLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 9998776 56667788999999999999999999999999999987642 4456788899999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 006812 314 NELSQKVLKTWG 325 (630)
Q Consensus 314 ~~~a~~~~~~~~ 325 (630)
+++++++.+..+
T Consensus 152 ~~~a~~~~~~~~ 163 (164)
T 3ro3_A 152 AEKHLEISREVG 163 (164)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHHhC
Confidence 999999865543
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=1.2e-15 Score=126.73 Aligned_cols=147 Identities=10% Similarity=0.058 Sum_probs=121.7
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 453 (630)
.||.++...|++++|+..+++++... |.....++.+|.+|...|++++|+.+|++++++ .+. ...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~--------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~--~~~ 66 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP--------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QER--DPK 66 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH--------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHH
Confidence 47888899999999999999887654 677788899999999999999999999999997 322 356
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHH-HHHHHHHHHHhcCCCC
Q 006812 454 VSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQV-FAFAKDIMDVSLGPHH 532 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~ 532 (630)
++..+|.+|...|++++|+.+|++++++ +|....++.++|.+|...|++++|... +++++++ +
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~ 130 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F 130 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence 8999999999999999999999999984 466677999999999999999987766 5899985 3
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 006812 533 ADSIEACQNLSKAYSSMGS 551 (630)
Q Consensus 533 ~~~~~~~~~la~~~~~~g~ 551 (630)
|+...++...+.++...|+
T Consensus 131 P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 4444678888999988885
No 100
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.64 E-value=1e-14 Score=126.63 Aligned_cols=172 Identities=19% Similarity=0.176 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812 246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG 325 (630)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 325 (630)
......+..+|.++...|++++|+..+++++...+ ....++..+|.++...|++++|+.++++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA--------FDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 34467889999999999999999999998876422 23567889999999999999999999999887
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812 326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI 405 (630)
Q Consensus 326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 405 (630)
.|....++..+|.++...|++++|+.++++++...+.+ ..++..+|.++...|++++|..++++++...
T Consensus 72 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 140 (186)
T 3as5_A 72 -APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLR------ 140 (186)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred -CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------
Confidence 56667889999999999999999999999999875544 4588999999999999999999999998764
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
|....++..+|.++...|++++|..++++++.+.+.
T Consensus 141 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 141 --PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred --ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 334578899999999999999999999999988654
No 101
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.63 E-value=7.7e-15 Score=142.48 Aligned_cols=122 Identities=13% Similarity=0.151 Sum_probs=116.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 006812 422 ESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL 500 (630)
Q Consensus 422 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 500 (630)
...|++++|+.++++++++.++..+++|+. +.++.+||.+|..+|+|++|+.++++++++.++.+|++||.++..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 356899999999999999999999999998 6778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006812 501 GAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS 543 (630)
Q Consensus 501 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 543 (630)
|.+|..+|++++|+.+|++|+++....+|++||.+.++..+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999998887764
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.63 E-value=2.2e-14 Score=128.63 Aligned_cols=176 Identities=13% Similarity=0.057 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
..++.+|..+...|++++|+..|+++++.. +..+....++..+|.+|...|++++|+..|+++++..+ ++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-----~~ 74 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----TH 74 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CC
Confidence 567789999999999999999999998653 44455568899999999999999999999999998765 34
Q ss_pred HHHHHHHHHHHHHHhc------------------cccHHHHHHHHHHHHHHHHHcCCChhHH--------------HHHH
Q 006812 288 VEVAHDRRLLGVIYSG------------------LEEHQKALEQNELSQKVLKTWGLSSELL--------------RAEI 335 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~ 335 (630)
+....+++.+|.++.. .|++++|+..|+++++.. +..+... ....
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHH
Confidence 4555677888888775 689999999999877642 1222111 2225
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 006812 336 DAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACG 397 (630)
Q Consensus 336 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 397 (630)
.+|.+|...|++++|+..|+++++..+.++ ....++..+|.++..+|++++|+..++.+..
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQ-ATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCC-ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 789999999999999999999999877653 3356899999999999999999999987654
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.63 E-value=1.6e-15 Score=125.82 Aligned_cols=147 Identities=12% Similarity=0.142 Sum_probs=123.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 006812 212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVA 291 (630)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 291 (630)
.||.++...|++++|+..+++++ +..|.....++.+|.+|...|++++|+.+|++++++.+ ...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~--------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--------~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGST--------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--------RDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHS--------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhc--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCH
Confidence 47889999999999999999987 45566678899999999999999999999999999744 335
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhhhcchHHHH
Q 006812 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINT-LKGVVRQTEKESETRAL 370 (630)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~~~~~~~~~~ 370 (630)
.++..+|.+|...|++++|+.+|++++++ +|....++.++|.+|...|++++|... ++++++..+.++ .
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~----~ 135 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP----A 135 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH----H
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH----H
Confidence 78899999999999999999999999998 788899999999999999999887765 589999877654 3
Q ss_pred HHHHHHHHHHhhcc
Q 006812 371 VFISMGKALCNQEK 384 (630)
Q Consensus 371 ~~~~la~~~~~~~~ 384 (630)
++...+.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 67778888877764
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.63 E-value=5.7e-14 Score=125.89 Aligned_cols=175 Identities=11% Similarity=0.020 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812 371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS 450 (630)
Q Consensus 371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 450 (630)
.++.+|..+...|++++|+..|++++.... ..+....++..+|.+|...|++++|+..|+++++.. +.++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~ 75 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP 75 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCC
Confidence 555666666666666666666666655431 112334566666777777777777777776666642 2222
Q ss_pred h-hHHHHHHHHHHHH------------------cCChhhHHHHHHHHHHHHHHhcCCCCccHHHH--------------H
Q 006812 451 E-GSVSARIGWLLLL------------------TGKVPQAIPYLESAAERLKESFGPKHFGVGYI--------------Y 497 (630)
Q Consensus 451 ~-~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~ 497 (630)
. ..+++.+|.++.. .|++++|+..|+++++. .|+++....+ .
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHHH
Confidence 2 2345566666554 68999999999999883 2344433222 2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 498 NNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 498 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
..+|.+|...|++++|+..|+++++.. |+++....++..+|.+|..+|++++|++.++++...
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 578999999999999999999999864 356667789999999999999999999999877643
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.61 E-value=3.7e-14 Score=125.23 Aligned_cols=165 Identities=10% Similarity=0.039 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH----------------HHHHHhccccHHHHHH
Q 006812 249 GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRL----------------LGVIYSGLEEHQKALE 312 (630)
Q Consensus 249 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 312 (630)
+..+...|..+...|++++|+.+|++++.+.+ ....++.. +|.+|...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI--------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH--------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 35577789999999999999999999998644 34455666 9999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccH--HHHHH
Q 006812 313 QNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKF--ADAKR 390 (630)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~--~~A~~ 390 (630)
.|++++++ .|....++..+|.++...|++++|+..|+++++..+.+ ..++..+|.+|...|+. ..+..
T Consensus 76 ~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 76 FYKELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN----LAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999998 78889999999999999999999999999999976655 44899999999877654 34455
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 391 CLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
.+.+++. +. ....+++.+|.++...|++++|+.+|++++++
T Consensus 146 ~~~~~~~-------~~--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 146 DYKKLSS-------PT--KMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHC---C-------CC--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHhC-------CC--chhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5554321 11 23346778899999999999999999999985
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.61 E-value=4.4e-15 Score=155.81 Aligned_cols=201 Identities=12% Similarity=-0.055 Sum_probs=163.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 006812 218 TAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLL 297 (630)
Q Consensus 218 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 297 (630)
...|++++|+..++++++..-......+|....++..+|.++...|++++|+..|+++++..+. ...+++++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--------RWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--------CHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--------hHHHHHHH
Confidence 7789999999999998822111111334555788999999999999999999999999997653 25778899
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 006812 298 GVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGK 377 (630)
Q Consensus 298 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 377 (630)
|.++...|++++|+..|++++++ +|....++.++|.++...|++++ +..|+++++..+.+ ..+++++|.
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~----~~a~~~lg~ 542 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV----ISAAFGLAR 542 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC----HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch----HHHHHHHHH
Confidence 99999999999999999999998 77788999999999999999999 99999999976554 448999999
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhCC
Q 006812 378 ALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETA-ISLLKRTLALLEKLP 445 (630)
Q Consensus 378 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 445 (630)
++...|++++|+..|++++++. |....++.++|.++...++.+++ ...+++++.......
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~--------P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTS--------RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTS--------TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHhhcccC--------cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9999999999999999987764 67788999999999887776666 677788887776664
No 107
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.60 E-value=1.2e-14 Score=141.64 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=122.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812 421 YESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN 499 (630)
Q Consensus 421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 499 (630)
+..+|++++|+..+++++++..+..++.|+. ..++.++|.+|..+|+|++|+.++++++++.+..+|++||.++..+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4578999999999999999999999999987 678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Q 006812 500 LGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM 549 (630)
Q Consensus 500 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 549 (630)
||.+|..+|++++|+.+|++|+++....+|++||.+.+++.+|+.+...+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887644
No 108
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.60 E-value=1.5e-14 Score=140.49 Aligned_cols=112 Identities=11% Similarity=0.024 Sum_probs=108.5
Q ss_pred HcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006812 464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS 543 (630)
Q Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 543 (630)
..|+|++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||+++..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHH-cCCCchh
Q 006812 544 KAYSSMGSYTLAIEFQQRAIDAWES-HGPSAQD 575 (630)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~ 575 (630)
.+|..+|++++|..+|++|++|+.. +|++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 9999999999999999999999998 7888765
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.59 E-value=4.6e-14 Score=124.60 Aligned_cols=168 Identities=15% Similarity=0.057 Sum_probs=117.8
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHH----------------HHHHHHHc
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLE----------------LANVKTAM 220 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~ 220 (630)
+..+...|..+...|++++|+..|++++.+ .|....+++. +|.++...
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----------------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC
Confidence 345677899999999999999999999998 3333445555 88888888
Q ss_pred CCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 006812 221 GRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVI 300 (630)
Q Consensus 221 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 300 (630)
|++++|+..|++++++. |....++..+|.++...|++++|+.+|++++++.+ ....++.++|.+
T Consensus 68 g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--------~~~~a~~~lg~~ 131 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--------DNLAANIFLGNY 131 (208)
T ss_dssp TCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHH
Confidence 88888888888887543 33356788888888888888888888888887643 234567778888
Q ss_pred HhccccH--HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 301 YSGLEEH--QKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 301 ~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
|...|+. +.+...+.+++ ..+....++..+|.++...|++++|+..|+++++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLS-------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhHHHHHHHHHHHHHHh-------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7766543 33344443322 12223345666777777788888888888888776553
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.54 E-value=2.2e-13 Score=120.44 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC---
Q 006812 349 EAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN--- 425 (630)
Q Consensus 349 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--- 425 (630)
+|+.+|+++.+. .. +.+++.+|.+|...+++++|+.+|+++.+. ..+.+++++|.+|.. +
T Consensus 4 eA~~~~~~aa~~---g~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GD---RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQ 66 (212)
T ss_dssp CTTHHHHHHHHT---TC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTS
T ss_pred hHHHHHHHHHHC---CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCC
Confidence 566777777763 11 448889999999999999999999998653 234788899999988 7
Q ss_pred -CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 006812 426 -EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL 500 (630)
Q Consensus 426 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 500 (630)
++++|+.+|+++.+. ....++++||.+|.. .+++++|+.+|+++.+. ++ ....+.++++|
T Consensus 67 ~~~~~A~~~~~~A~~~---------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~-~~~~~~a~~~L 131 (212)
T 3rjv_A 67 ADYPQARQLAEKAVEA---------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE-SDAAVDAQMLL 131 (212)
T ss_dssp CCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT-SHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC-CcchHHHHHHH
Confidence 899999999999662 134578999999988 89999999999999872 11 11357789999
Q ss_pred HHHHHH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHH
Q 006812 501 GAAYLE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM-G-----SYTLAIEFQQRAIDA 565 (630)
Q Consensus 501 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 565 (630)
|.+|.. .+++++|+.+|+++.+.. .++ .++++||.+|... | ++++|+.+|+++++.
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~---~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSLS------RTG---YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHTS------CTT---HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHcC------CCH---HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999999 889999999999998731 223 4889999999764 3 899999999999865
No 111
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.52 E-value=1.5e-13 Score=134.01 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=122.9
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHH
Q 006812 377 KALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE-GSVS 455 (630)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~ 455 (630)
.-+..+|++++|+..+++++++..+..+++++..+.++.++|.+|..+|+|++|+.++++++++.++..++.||. +..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 335578899999999999999999999999999999999999999999999999999999999999999999998 5677
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL 507 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 507 (630)
++||.+|..+|++++|+.+|++|+++.+..+|++||.+..++.+|+.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887654
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.52 E-value=1.9e-13 Score=109.14 Aligned_cols=116 Identities=11% Similarity=0.081 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
|..+..+.++|..|...|++++|+..|++++++ .+. ...++.++|.+|..+|++++|+..|++++++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------ 76 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRL------ 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh------
Confidence 788999999999999999999999999999987 222 3568899999999999999999999999984
Q ss_pred CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812 488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY 546 (630)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 546 (630)
+|....++.++|.++..+|++++|+..|++++++ +|+...++..|+.++
T Consensus 77 --~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 --DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred --hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 3566779999999999999999999999999995 355557777777653
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.51 E-value=3.7e-13 Score=107.52 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
-+|..+..+.++|..|+..|+|++|+..|++++++.+ ....++.++|.+|..+|++++|+..+++++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--------ENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 4578899999999999999999999999999998644 33577889999999999999999999999998
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Q 006812 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKA 378 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 378 (630)
+|....++..+|.++..+|++++|+..|++++++.+.+.. ++..++.+
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~----a~~~l~~~ 124 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE----AREGVRNC 124 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHH
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH----HHHHHHHh
Confidence 7788899999999999999999999999999998766543 55555544
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.51 E-value=1.1e-12 Score=116.01 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhc----c
Q 006812 309 KALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQE----K 384 (630)
Q Consensus 309 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~----~ 384 (630)
+|+.+|+++.+. ....++..+|.+|...+++++|+.+|+++.+.. .+.+++.+|.+|.. + +
T Consensus 4 eA~~~~~~aa~~--------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCC
Confidence 466677766652 457788999999999999999999999998742 14588999999998 7 8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES----MNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGW 460 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 460 (630)
+++|+.+|+++.+. ....+++++|.+|.. .+++++|+.+|+++.+. ++......++++||.
T Consensus 69 ~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 69 YPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SESDAAVDAQMLLGL 133 (212)
T ss_dssp HHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CCCcchHHHHHHHHH
Confidence 99999999998542 345788999999988 88999999999999863 211012568899999
Q ss_pred HHHH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHH
Q 006812 461 LLLL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLEL-D-----RPQSAAQVFAFAKDI 523 (630)
Q Consensus 461 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~ 523 (630)
+|.. .+++++|+.+|+++++. +....++++||.+|... | ++++|+.+|+++.+.
T Consensus 134 ~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 134 IYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9999 88999999999999872 22234789999999864 3 899999999999885
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.50 E-value=1.2e-13 Score=118.47 Aligned_cols=164 Identities=15% Similarity=0.067 Sum_probs=133.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812 293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVF 372 (630)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 372 (630)
.+..+|..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++...+ ++. .+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~----~~ 76 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS----YK 76 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH----HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH----HH
Confidence 4667899999999999999999998886 678889999999999999999999999999987665 321 23
Q ss_pred HHHHHHH-HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812 373 ISMGKAL-CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE 451 (630)
Q Consensus 373 ~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 451 (630)
..++.+. ...++..+|+..+++++... |....++..+|.++...|++++|+..|++++.. .+....
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~ 143 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKV-----NLGAQD 143 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTTTT
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CcccCh
Confidence 3334332 22334446788999988764 556689999999999999999999999999875 222333
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
..++..+|.++...|+.++|+..|++++.
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45889999999999999999999999886
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.50 E-value=1.4e-13 Score=117.91 Aligned_cols=163 Identities=15% Similarity=0.076 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812 371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS 450 (630)
Q Consensus 371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 450 (630)
.+..+|..+...|++++|+..++++++.. |....++..+|.++...|++++|+..+++++.. .+ .+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~~ 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-DN 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-Ch
Confidence 56788899999999999999999998876 667789999999999999999999999998764 12 22
Q ss_pred hhHHHHHHHHHH-HHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812 451 EGSVSARIGWLL-LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG 529 (630)
Q Consensus 451 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 529 (630)
.....++.+. ...++..+|+..+++++++ +|....++..+|.++...|++++|+..|++++.+
T Consensus 74 --~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------ 137 (176)
T 2r5s_A 74 --SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV------ 137 (176)
T ss_dssp --HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------
T ss_pred --HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------
Confidence 2333344332 2334556689999999983 4666779999999999999999999999999883
Q ss_pred CCCHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 530 PHHADS--IEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 530 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
+|.. ..++..++.++...|+.++|...|++++..
T Consensus 138 --~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 --NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred --CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 3432 358999999999999999999999999864
No 117
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=1.1e-12 Score=105.04 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=96.5
Q ss_pred hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233 (630)
Q Consensus 154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (630)
++.+.++..+|..++..|+|++|+.+|++++.+ .|....+++++|.+|..+|++++|+..|+++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----------------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----------------DPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 357788999999999999999999999999998 3344578889999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 006812 234 LEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIH 279 (630)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 279 (630)
+++.+... ...+..+.++..+|.++...|++++|+.+|++++...
T Consensus 69 l~~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 69 VEVGRETR-ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCcccc-hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99887642 4556778899999999999999999999999999853
No 118
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=2.3e-10 Score=117.65 Aligned_cols=230 Identities=10% Similarity=0.019 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHH
Q 006812 310 ALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAI-NTLKGVVRQTEKESETRALVFISMGKALCNQEKFADA 388 (630)
Q Consensus 310 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 388 (630)
....|++++.. .|.....+...+......|+.++|. ..|++++...+.. ...+..++.+....|++++|
T Consensus 328 v~~~Ye~aL~~------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 328 MTYVYMQAAQH------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp HHHHHHHHHHH------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHH------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHH
Confidence 34455555554 4556778888899999999999997 9999999866544 34788889999999999999
Q ss_pred HHHHHHHHHHHHhhc------CCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812 389 KRCLEIACGILDKKE------TIS--------PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV 454 (630)
Q Consensus 389 ~~~~~~a~~~~~~~~------~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 454 (630)
...|++++....... .+. +.....+|...+.+..+.|+.+.|...|.+|++... .....+
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~------~~~~~l 471 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK------LVTPDI 471 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG------GSCTHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCChHH
Confidence 999999998642110 010 013456788888888899999999999999987411 111345
Q ss_pred HHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCH
Q 006812 455 SARIGWLLLLTG-KVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHA 533 (630)
Q Consensus 455 ~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 533 (630)
+...+.+....+ +++.|..+|+.+++.+ |.....+...+......|+.+.|...|++++.... ...
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~-----~~~ 538 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS-----DSH 538 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS-----STT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-----CHH
Confidence 666677766665 4899999999999853 33344556777788889999999999999987321 111
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 534 DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 534 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
.....+......-...|+.+.+..+++++.+.++.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45567888888889999999999999999877653
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.49 E-value=3.5e-13 Score=125.48 Aligned_cols=166 Identities=11% Similarity=0.056 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 448 (630)
...+..+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..+++++.. .+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p- 182 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS--------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQ- 182 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GC-
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hc-
Confidence 4577889999999999999999999998875 456688999999999999999999999888664 11
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
.........+..+...++.++|+..|++++.. +|+...+++++|.++...|++++|+..|++++..
T Consensus 183 -~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~----- 248 (287)
T 3qou_A 183 -DTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX----- 248 (287)
T ss_dssp -SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred -chHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----
Confidence 12234466667788888999999999999883 4677778999999999999999999999999984
Q ss_pred CCCCHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 529 GPHHADS--IEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 529 ~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
+|+. ..++.+++.++...|+.++|...|++++..
T Consensus 249 ---~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 249 ---DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ---CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3443 578999999999999999999999998864
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.48 E-value=1.9e-11 Score=112.67 Aligned_cols=238 Identities=8% Similarity=-0.081 Sum_probs=190.0
Q ss_pred hcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 006812 262 VLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLE--EHQKALEQNELSQKVLKTWGLSSELLRAEIDAAN 339 (630)
Q Consensus 262 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 339 (630)
....++|+..+.+++.+.+ ....+++..+.+....| ++++++.+++.++.. +|....++...+.
T Consensus 46 ~e~s~~aL~~t~~~L~~nP--------~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------nPk~y~aW~~R~~ 111 (306)
T 3dra_A 46 EEYSERALHITELGINELA--------SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------NEKNYQIWNYRQL 111 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------CTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCc--------HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------CcccHHHHHHHHH
Confidence 3444689999999998744 34577888999999999 999999999999887 7778888888888
Q ss_pred HH----HHc---CCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHhhcCCCcHHH
Q 006812 340 MQ----IAL---GKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFA--DAKRCLEIACGILDKKETISPEEV 410 (630)
Q Consensus 340 ~~----~~~---g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~~~ 410 (630)
++ ... +++++++..+.++++..+++ ..+|...+.+....|.++ +++.+++++++.. +..
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn----y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--------~~N 179 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKN----HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--------LKN 179 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--------TTC
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--------CCC
Confidence 88 666 78999999999999976666 448999999999999998 9999999988764 455
Q ss_pred HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh-HHHHHHHHHHHHH
Q 006812 411 ADAYSEISMQYESMNE------FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ-AIPYLESAAERLK 483 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~ 483 (630)
..+|...+.+....+. ++++++++.+++.+ . +.+..+|+.++.++...|+..+ ...+..+++++
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~-- 250 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-----C--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL-- 250 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----C--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG--
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-----C--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc--
Confidence 5789999999998887 99999999999986 2 2235688999999999998655 44466655542
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006812 484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSK 544 (630)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 544 (630)
+...+....++..++.+|...|+.++|+++|+.+.+. .+|.....+...+.
T Consensus 251 ---~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-------~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 251 ---EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-------YNPIRSNFWDYQIS 301 (306)
T ss_dssp ---GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCGGGHHHHHHHHH
T ss_pred ---cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------cChHHHHHHHHHHh
Confidence 1124666778999999999999999999999998751 24555555555443
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.47 E-value=8.6e-12 Score=114.96 Aligned_cols=235 Identities=14% Similarity=0.070 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhcchHHH
Q 006812 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG--KFEEAINTLKGVVRQTEKESETRA 369 (630)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~ 369 (630)
.+...+-.+.......++|+..+.+++.+ +|....+++..+.+....| .+++++..+..++...+++..
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--- 104 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINE------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--- 104 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---
Confidence 33333333444445557899999999998 8999999999999999999 999999999999997776644
Q ss_pred HHHHHHHHHH----Hhh---ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHH
Q 006812 370 LVFISMGKAL----CNQ---EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE--TAISLLKRTLAL 440 (630)
Q Consensus 370 ~~~~~la~~~----~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~ 440 (630)
+|+..+.++ ... +++++++.+++++++.. |....+|...+.+....|.++ ++++++.++++.
T Consensus 105 -aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 105 -IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 788778777 666 78999999999998865 455689999999999999998 999999999985
Q ss_pred HHhCCCCCCchhHHHHHHHHHHHHcCC------hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH-H
Q 006812 441 LEKLPQAQHSEGSVSARIGWLLLLTGK------VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS-A 513 (630)
Q Consensus 441 ~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A 513 (630)
+ ..+..+|...+.+....|+ ++++++++.+++. .+|....+++.++.++...|+..+ .
T Consensus 176 -----d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--------~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 176 -----D--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--------KCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp -----C--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--------HCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred -----C--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--------hCCCCccHHHHHHHHHHhcCCChHHH
Confidence 2 2235688999999998887 8999999999998 357777799999999999998655 4
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 514 AQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 514 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
..++.+++.+. ..++....++..++.+|.+.|+.++|+++|+.+.+
T Consensus 241 ~~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44666555421 11244447899999999999999999999999764
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=1.2e-12 Score=121.76 Aligned_cols=168 Identities=15% Similarity=0.042 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812 291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL 370 (630)
Q Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 370 (630)
...+..+|..+...|++++|+..|++++.. .|+...++..+|.++...|++++|+..+++++...+. ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~----~~~ 186 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD----TRY 186 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS----HHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc----hHH
Confidence 456778999999999999999999999987 7888899999999999999999999999998876542 234
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc
Q 006812 371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS 450 (630)
Q Consensus 371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 450 (630)
.....+..+...++.++|+..+++++... |+...++.++|.++...|++++|+..|++++.. .+...
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~-----~p~~~ 253 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRX-----DLTAA 253 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTGG
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----ccccc
Confidence 56666777888899999999999998875 566789999999999999999999999999997 33444
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAER 481 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 481 (630)
...++..++.++...|+.++|...|++++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4678999999999999999999999998863
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=6.2e-13 Score=109.28 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=97.8
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
+....+++.+|.++...|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++.+.
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---- 100 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---- 100 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----
Confidence 334678899999999999999999999999984 46677799999999999999999999999999953
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 006812 529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQ 586 (630)
Q Consensus 529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~ 586 (630)
|+...+++++|.+|..+|++++|+..|++++++. ++ ....++|..+.+.
T Consensus 101 ----P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~----~~-~~~~~~A~~ll~~ 149 (151)
T 3gyz_A 101 ----KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS----ND-EKLKIKAQSYLDA 149 (151)
T ss_dssp ----SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC-HHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC-HHHHHHHHHHHHh
Confidence 4455799999999999999999999999999874 22 2344555555443
No 124
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.45 E-value=4.2e-12 Score=101.57 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
++.+.++.++|..+...|++++|+.+|++++++ .+. ...++.++|.+|..+|++++|+..+++++++.... .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~ 76 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPS--NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-R 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-c
Confidence 467788999999999999999999999999997 222 35688999999999999999999999999987654 2
Q ss_pred CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
..++..+.++.++|.++..+|++++|+++|++++..
T Consensus 77 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 77 ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345667789999999999999999999999999985
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.44 E-value=9.9e-13 Score=117.92 Aligned_cols=202 Identities=14% Similarity=0.041 Sum_probs=164.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHhhhc-
Q 006812 293 DRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDA-------ANMQIALGKFEEAINTLKGVVRQTEKE- 364 (630)
Q Consensus 293 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~~~~- 364 (630)
.++..|.-+ ..+++..|...|.++..+ +|..+.++..+ +.++...++..+++..+++.+.+.+..
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l 81 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNY------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL 81 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHh------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 344555555 589999999999999998 89999999999 899999999999999999988855442
Q ss_pred ----c------------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHH
Q 006812 365 ----S------------ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFE 428 (630)
Q Consensus 365 ----~------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 428 (630)
. .....+...++.++...|++++|.+.|+..+.. .|... ..+.+|.++...++++
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWT 152 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHH
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHH
Confidence 1 012456777899999999999999998876542 14555 8899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHH
Q 006812 429 TAISLLKRTLALLEKLPQAQHSE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG-VGYIYNNLGAAYL 505 (630)
Q Consensus 429 ~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~ 505 (630)
+|+.+|+++... . ++. ..+++.+|.++..+|++++|+.+|++++. ++..|. ...+.+++|.++.
T Consensus 153 dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 153 DVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp HHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHH
Confidence 999999866431 1 221 35789999999999999999999999974 222255 6778999999999
Q ss_pred HcCChhHHHHHHHHHHHH
Q 006812 506 ELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 506 ~~g~~~~A~~~~~~al~~ 523 (630)
.+|+.++|...|++++..
T Consensus 220 ~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 220 SQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999999984
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.44 E-value=2.8e-13 Score=129.04 Aligned_cols=164 Identities=14% Similarity=0.067 Sum_probs=133.9
Q ss_pred hhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCC--------chh
Q 006812 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQH--------SEG 452 (630)
Q Consensus 381 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~ 452 (630)
.++++++|+..+++++... |..+.++..+|.++...|++++|+..|++++.+.+....... ...
T Consensus 125 ~L~~~~~A~~~~~~a~~~~--------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEK--------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEEECCCCGGGCCHHHH--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 3566777777777766554 677889999999999999999999999999998543311000 014
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 532 (630)
.++.++|.+|..+|++++|+.+|++++++ .|....+++++|.+|..+|++++|+..|++++++ +
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 260 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------Y 260 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------C
Confidence 68899999999999999999999999994 3566789999999999999999999999999995 3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHH
Q 006812 533 ADSIEACQNLSKAYSSMGSYTLA-IEFQQRAIDAWES 568 (630)
Q Consensus 533 ~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~ 568 (630)
|....++..++.++...|++++| ...|++++..+..
T Consensus 261 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (336)
T 1p5q_A 261 PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297 (336)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45557899999999999999999 5678887765443
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.43 E-value=1.2e-12 Score=135.33 Aligned_cols=156 Identities=15% Similarity=0.058 Sum_probs=120.3
Q ss_pred hccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH
Q 006812 382 QEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWL 461 (630)
Q Consensus 382 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 461 (630)
.|++++|+..++++++.. |....++..+|.++...|++++|+.+|++++++ .+ ....++..+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p--~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HP--GHPEAVARLGRV 66 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----ST--TCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC--CCHHHHHHHHHH
Confidence 478899999999988765 455688999999999999999999999999985 22 235688999999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006812 462 LLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQN 541 (630)
Q Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 541 (630)
+..+|++++|+.+|++++++ +|....++.++|.+|...|++++|+.+|++++++ +|+...++.+
T Consensus 67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 130 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ 130 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 99999999999999999984 3556778999999999999999999999999985 3455578999
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHHHHH
Q 006812 542 LSKAYSSM---GSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 542 la~~~~~~---g~~~~A~~~~~~al~~~~~ 568 (630)
+|.++... |++++|.+.++++++..+.
T Consensus 131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 99999999 9999999999999986543
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=3.1e-12 Score=114.72 Aligned_cols=207 Identities=13% Similarity=-0.004 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHH-------HHHHHhhccHHHHHHHHHHHHHHHHhhcCC
Q 006812 333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISM-------GKALCNQEKFADAKRCLEIACGILDKKETI 405 (630)
Q Consensus 333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 405 (630)
..+..|..+ ..+++..|...|.+++...+.. +.+|..+ +.++...++..+++..+.+++.+.......
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~----~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESA----CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh----hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 344455555 5899999999999999965544 5689988 899999999999999888887755433221
Q ss_pred CcH-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHH
Q 006812 406 SPE-------------EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAI 472 (630)
Q Consensus 406 ~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 472 (630)
... .-..+...++.++...|++++|.+.|...+. ..+... ..+.+|.++.+.|+|++|+
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-------~~p~~~-~~~~~a~l~~~~~r~~dA~ 155 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-------AGSEHL-VAWMKAVVYGAAERWTDVI 155 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-------TTCHHH-HHHHHHHHHHHTTCHHHHH
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCchH-HHHHHHHHHHHcCCHHHHH
Confidence 110 1235566788999999999999999877654 122234 7899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhcC
Q 006812 473 PYLESAAERLKESFGPKHFG-VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHAD-SIEACQNLSKAYSSMG 550 (630)
Q Consensus 473 ~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g 550 (630)
.+|+++... .++. ...+++++|.++..+|++++|+.+|+++.. ++..|. ...+.+.+|.++..+|
T Consensus 156 ~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 156 DQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcC
Confidence 999866541 1232 245889999999999999999999999974 333254 6679999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006812 551 SYTLAIEFQQRAIDA 565 (630)
Q Consensus 551 ~~~~A~~~~~~al~~ 565 (630)
+.++|...|++++..
T Consensus 223 r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 223 NESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999976
No 129
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.40 E-value=1.5e-11 Score=99.18 Aligned_cols=119 Identities=13% Similarity=-0.019 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG----PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVS 527 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 527 (630)
+..+.++|..++..|+|++|+..|++++++...... ...|..+.+|.++|.++..+|++++|+..|+++++++.+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 346789999999999999999999999997543100 0012245599999999999999999999999999986555
Q ss_pred cCCCCHHHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q 006812 528 LGPHHADSIEAC----QNLSKAYSSMGSYTLAIEFQQRAIDAWESHGP 571 (630)
Q Consensus 528 ~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 571 (630)
. +.+|+...+| +++|.++..+|++++|+..|++++++-+....
T Consensus 91 ~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 91 G-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp C-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred c-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 3 4567888889 99999999999999999999999999887443
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.40 E-value=6.3e-13 Score=109.23 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF 486 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (630)
.|....+++.+|.++...|++++|+.+|++++.+ .+. ...+|.++|.++...|++++|+..|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence 3688899999999999999999999999999997 332 3468999999999999999999999999994
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
.|....+++++|.+|..+|++++|+..|++++++.
T Consensus 100 ---~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 ---GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ---SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555689999999999999999999999999964
No 131
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.40 E-value=3.1e-12 Score=132.17 Aligned_cols=158 Identities=16% Similarity=0.055 Sum_probs=120.7
Q ss_pred ccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHH
Q 006812 170 FKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELG 249 (630)
Q Consensus 170 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 249 (630)
.|++++|+..|+++++. .|....+++.+|.++...|++++|+..|++++++ .|...
T Consensus 2 ~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 57 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----------------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHP 57 (568)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCH
T ss_pred CccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 47889999999999887 2333567889999999999999999999999854 34446
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 329 (630)
.++..+|.+|...|++++|+.+|++++++.+ ....++.++|.+|...|++++|+.++++++++ .|.
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 123 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAP--------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPE 123 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Confidence 7899999999999999999999999998643 23567889999999999999999999999987 667
Q ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhhcc
Q 006812 330 LLRAEIDAANMQIAL---GKFEEAINTLKGVVRQTEKES 365 (630)
Q Consensus 330 ~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~~~~~ 365 (630)
...++.++|.++... |++++|+..++++++..+...
T Consensus 124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 788899999999999 999999999999999876653
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.39 E-value=1.1e-12 Score=124.98 Aligned_cols=161 Identities=14% Similarity=0.059 Sum_probs=109.5
Q ss_pred hccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc------
Q 006812 169 SFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILE------ 242 (630)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 242 (630)
.++++++|+..+++++.. .+..+..++.+|.++...|++++|+..|++++++.+....
T Consensus 125 ~L~~~~~A~~~~~~a~~~----------------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~ 188 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE----------------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188 (336)
T ss_dssp EEEEEECCCCGGGCCHHH----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH
T ss_pred EEeecccccchhcCCHHH----------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHH
Confidence 677888888888887765 4556788899999999999999999999999987643210
Q ss_pred -cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 006812 243 -EDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVL 321 (630)
Q Consensus 243 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 321 (630)
...+....++.++|.+|...|++++|+.+|++++++.+ ....+++++|.+|..+|++++|+.+|++++++
T Consensus 189 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l- 259 (336)
T 1p5q_A 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--------NNEKGLSRRGEAHLAVNDFELARADFQKVLQL- 259 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 01123356667777777777777777777777776533 22455666677777777777777777666665
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 006812 322 KTWGLSSELLRAEIDAANMQIALGKFEEA-INTLKGVVR 359 (630)
Q Consensus 322 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~ 359 (630)
.|....++..++.++...|++++| ...|++++.
T Consensus 260 -----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 260 -----YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -----CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666 334555443
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.38 E-value=4.8e-12 Score=112.42 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK 489 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (630)
....++.+|.++...|++++|+..|++++. +...++.++|.++...|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD----------PHSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 345678899999999999999999998741 13468899999999999999999999999984
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL--------GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQR 561 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 561 (630)
.|....++.++|.++...|++++|+..|++++.+..... ....|....++.++|.+|...|++++|..+|++
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 355677899999999999999999999999998543210 002345668999999999999999999999999
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHH
Q 006812 562 AIDAWESHGPSAQDELREARRLLE 585 (630)
Q Consensus 562 al~~~~~~~~~~~~~~~~A~~~~~ 585 (630)
++++.+. ...+..++++..+.
T Consensus 147 al~~~p~---~~~~~~~~a~~~~~ 167 (213)
T 1hh8_A 147 ATSMKSE---PRHSKIDKAMECVW 167 (213)
T ss_dssp HHTTCCS---GGGGHHHHHHHHHH
T ss_pred HHHcCcc---cccchHHHHHHHHH
Confidence 9876432 23345555555543
No 134
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=1.8e-11 Score=99.55 Aligned_cols=131 Identities=26% Similarity=0.385 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (630)
.++..+|.++...|++++|+.++++++.. .+. ...++..+|.++...|++++|+.++++++.. .|
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~ 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CC
Confidence 46788999999999999999999999875 222 2457889999999999999999999999874 24
Q ss_pred cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|..++++++.+
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 445678899999999999999999999998842 333468899999999999999999999999875
No 135
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.37 E-value=1.8e-11 Score=98.72 Aligned_cols=122 Identities=17% Similarity=0.050 Sum_probs=99.0
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.+..+...|..++..|+|++|+..|++++.+....... ...+..+..+.+|.++|.++..+|+|++|+..|+++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46677889999999999999999999999994431110 01122334456899999999999999999999999999
Q ss_pred HHHHHhccchHHHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812 236 IKELILEEDSRELGVAN----RDLAEAFVAVLNFKEALPFGLKALEIHKKG 282 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (630)
++.... +-+|+...+| +++|.++...|++++|+..|++++++.+.-
T Consensus 86 l~n~~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 86 YFNRRG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hhhccc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 854432 4456677888 999999999999999999999999998863
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.36 E-value=2.3e-11 Score=103.08 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812 409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488 (630)
Q Consensus 409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (630)
..+..+..+|.++...|++++|+.+|++++.+. +. ...++..+|.++...|++++|+.++++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------- 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-----PS--NAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 456788999999999999999999999999862 22 2568899999999999999999999999984
Q ss_pred CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 489 KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 489 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
.|....++..+|.++...|++++|+.+|++++.+. +.++. ......++..+...|++++|+..+.++..++..
T Consensus 77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 35556789999999999999999999999999853 23332 123355566688899999999999999888877
Q ss_pred cCC
Q 006812 569 HGP 571 (630)
Q Consensus 569 ~~~ 571 (630)
.+.
T Consensus 150 ~~~ 152 (166)
T 1a17_A 150 LDI 152 (166)
T ss_dssp CCC
T ss_pred cch
Confidence 554
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=3.1e-11 Score=96.73 Aligned_cols=122 Identities=11% Similarity=-0.015 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhH
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGR 189 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 189 (630)
..+..+..+|..++..| ++++|+..|++++++.+ ..+.++..+|.++...|++++|+..|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--- 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAP----------EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--- 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC----------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 45678899999999999 99999999999998753 23578899999999999999999999999998
Q ss_pred hhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 006812 190 LEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV 260 (630)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 260 (630)
.|....+++.+|.++...|++++|+..|++++++.+.. .+.|....+...++.+..
T Consensus 68 -------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 -------------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHH
T ss_pred -------------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHH
Confidence 23345778899999999999999999999999887554 333444556666665543
No 138
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=1.7e-09 Score=111.31 Aligned_cols=406 Identities=8% Similarity=-0.018 Sum_probs=248.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
...+-+..|++.+... |....++..+.......+.++.+...|++++.. .|...
T Consensus 47 ~~~d~i~~lE~~l~~n----------p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~----------------fP~~~ 100 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ----------PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR----------------FPLMA 100 (679)
T ss_dssp CCSCHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCH
T ss_pred CCHHHHHHHHHHHHHC----------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----------------CCCCH
Confidence 3455666777776543 234566777888888889999999999999998 34445
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCH----HH----HHHHHHHHH
Q 006812 208 AVHLELANVKTAMGR---REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNF----KE----ALPFGLKAL 276 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al 276 (630)
..|...+..-...|+ ++.+...|++++... ..+|. ...+..........++. ++ ....|+.|+
T Consensus 101 ~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~-----~~~~s-v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl 174 (679)
T 4e6h_A 101 NIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE-----LGNND-LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVV 174 (679)
T ss_dssp HHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS-----SCCCC-HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc-----CCCCC-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 667777777788888 999999999998432 00022 22343333333333433 23 346777777
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHH------HhccccHHHHHHHHHHHHHH---------------HHHcCCCh-------
Q 006812 277 EIHKKGLGHNSVEVAHDRRLLGVI------YSGLEEHQKALEQNELSQKV---------------LKTWGLSS------- 328 (630)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~a~~~---------------~~~~~~~~------- 328 (630)
..... ....+..+...|...-.. +..+++.+.+...|.+++.+ .+..+...
T Consensus 175 ~~vG~-~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e 253 (679)
T 4e6h_A 175 DKCAI-FEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE 253 (679)
T ss_dssp HHTTT-TCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHhCc-ccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 64332 011233344333322111 11233455555555555431 00000000
Q ss_pred ----------------------------------------------hHHHHHHHHHHHHHHcC-------CHHHHHHHHH
Q 006812 329 ----------------------------------------------ELLRAEIDAANMQIALG-------KFEEAINTLK 355 (630)
Q Consensus 329 ----------------------------------------------~~~~~~~~la~~~~~~g-------~~~~A~~~~~ 355 (630)
.....+......-...+ ..+.....|+
T Consensus 254 ~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 254 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 00111111111111100 0223445666
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006812 356 GVVRQTEKESETRALVFISMGKALCNQEKFADAK-RCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLL 434 (630)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 434 (630)
+++...+.. ...|...+..+...|+.++|. ..|++|+..+ |.....+...+.+....|++++|...|
T Consensus 334 ~aL~~~p~~----~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 334 QAAQHVCFA----PEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHTTTC----HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 666655443 448888899899999999997 9999998754 334467888999999999999999999
Q ss_pred HHHHHHHHhCC------CCCC---------chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 006812 435 KRTLALLEKLP------QAQH---------SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNN 499 (630)
Q Consensus 435 ~~al~~~~~~~------~~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 499 (630)
++++....... .+.. ....+|...+.+..+.|+.+.|...|.+|++.. .+....++..
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~lyi~ 474 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDIYLE 474 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHHHHH
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHHHHH
Confidence 99998642110 0100 123467777888888999999999999998731 1112335556
Q ss_pred HHHHHHHcC-ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---cC-----
Q 006812 500 LGAAYLELD-RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES---HG----- 570 (630)
Q Consensus 500 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~----- 570 (630)
.+.+....+ +++.|...|+++++.+. +.+ ..+...+......|+.+.|..+|++++..... .+
T Consensus 475 ~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~---~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~ 546 (679)
T 4e6h_A 475 NAYIEYHISKDTKTACKVLELGLKYFA-----TDG---EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK 546 (679)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCC-----Cch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 666666665 49999999999999652 334 44556677788889999999999998854321 00
Q ss_pred ----CCchhHHHHHHHHHHHHHHHhcC
Q 006812 571 ----PSAQDELREARRLLEQLKIKASG 593 (630)
Q Consensus 571 ----~~~~~~~~~A~~~~~~~~~~~~~ 593 (630)
....|+.+.+..+.+++.+....
T Consensus 547 ~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 547 VIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 01345667788888887766554
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.33 E-value=4.8e-11 Score=101.02 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
.+..+..+|.++...|++++|+..+++++...+.+ ..++..+|.++...|++++|+.++++++.+. |.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~ 79 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD--------KK 79 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cc
Confidence 34556667777777777777777777777654433 3467777777777777777777777777653 33
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKE 484 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 484 (630)
...++..+|.++...|++++|+.++++++.+ .+..+.......++..+...|++++|+..+.++..+...
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 4467777888888888888888888887776 222333333355555577778888888888877766544
No 140
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=5.3e-11 Score=96.64 Aligned_cols=131 Identities=18% Similarity=0.274 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV 371 (630)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 371 (630)
.++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+.. ..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~ 71 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEA 71 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHH
Confidence 35778899999999999999999998876 45567788899999999999999999999999865543 447
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 372 FISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 372 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
+..+|.++...|++++|..++++++... |....++..+|.++...|++++|..++++++..
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8899999999999999999999998764 233467889999999999999999999999875
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.33 E-value=1.3e-11 Score=101.72 Aligned_cols=121 Identities=11% Similarity=0.040 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 530 (630)
....++.+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++.+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------ 85 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD------ 85 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence 4668899999999999999999999999983 45667789999999999999999999999999852
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Q 006812 531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLK 588 (630)
Q Consensus 531 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~ 588 (630)
|+...+++++|.+|...|++++|+..|++++++.+.. +.......++..+++.+.
T Consensus 86 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 86 --IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX-PEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp --TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHC-
T ss_pred --CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-CcchHHHHHHHHHHHHHH
Confidence 4445789999999999999999999999999886532 222333445555555443
No 142
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.32 E-value=2.1e-11 Score=108.23 Aligned_cols=138 Identities=12% Similarity=0.027 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC
Q 006812 208 AVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS 287 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 287 (630)
..++.+|.++...|++++|+..|++++ +. ...++..+|.+|...|++++|+.+|++++.+.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------- 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------- 68 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------
Confidence 456789999999999999999999874 11 246889999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC----------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 288 VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG----------LSSELLRAEIDAANMQIALGKFEEAINTLKGV 357 (630)
Q Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 357 (630)
....++.++|.++...|++++|+.+|+++++...... ..+....++.++|.++...|++++|+..++++
T Consensus 69 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 69 -HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2356788999999999999999999999888644332 33566788999999999999999999999999
Q ss_pred HHHhhhc
Q 006812 358 VRQTEKE 364 (630)
Q Consensus 358 l~~~~~~ 364 (630)
+...+..
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8876544
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.32 E-value=1.4e-11 Score=101.51 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcC
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFG 487 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (630)
|.....++.+|.++...|++++|+..|++++.+ .+. ...++..+|.++...|++++|+.+|++++.+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 84 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------ 84 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----Ccc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 677889999999999999999999999999986 222 3468899999999999999999999999984
Q ss_pred CCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 488 PKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
.|....+++++|.+|...|++++|+.+|++++++..
T Consensus 85 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 85 --DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp --STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 244556889999999999999999999999999763
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.32 E-value=3.3e-11 Score=98.77 Aligned_cols=124 Identities=13% Similarity=0.044 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812 450 SEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG 529 (630)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 529 (630)
.....++.+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++.+
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 81 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM------ 81 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34667899999999999999999999999983 4666778999999999999999999999999985
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812 530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK 590 (630)
Q Consensus 530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~ 590 (630)
+|+...+++++|.+|...|++++|+..|++++++.+... .......++...++.+...
T Consensus 82 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 82 --DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP-AHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp --CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHHHH
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHHHhc
Confidence 244457899999999999999999999999999876422 2334455666666665543
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=3.5e-12 Score=111.68 Aligned_cols=166 Identities=12% Similarity=-0.006 Sum_probs=114.4
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc---
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS--- 450 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--- 450 (630)
..+......|+++++.+.++...... +..+..+..+|..+...|++++|+.+|++++.+.+........
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEK--------VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL 80 (198)
T ss_dssp -------------CCCSGGGCCHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 34445556667777766665443322 4566788899999999999999999999998864433211000
Q ss_pred ------hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 451 ------EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 451 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
...++.++|.++...|++++|+.++++++.+ .|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 151 (198)
T 2fbn_A 81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-
Confidence 1267899999999999999999999999984 3556778999999999999999999999999985
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 006812 525 DVSLGPHHADSIEACQNLSKAYSSMGSYTLAI-EFQQRAI 563 (630)
Q Consensus 525 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al 563 (630)
+|....++..++.++...|+..++. ..|.+.+
T Consensus 152 -------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 152 -------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -------STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445578899999999998888877 4444443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.31 E-value=5.4e-11 Score=95.31 Aligned_cols=121 Identities=15% Similarity=0.026 Sum_probs=97.6
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
..+..+..+|..++..|++++|+..|++++.+ .|....+++.+|.++...|++++|+..|++++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------APEDARGYSNRAAALAKLMSFPEAIADCNKAI 65 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45678899999999999999999999999998 23335788899999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIY 301 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 301 (630)
++. |....++..+|.++...|++++|+..|++++++.+... +.|....++..++.+.
T Consensus 66 ~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 66 EKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHH
T ss_pred HhC--------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHH
Confidence 653 33367899999999999999999999999999885432 2233334444444443
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.30 E-value=2e-11 Score=113.12 Aligned_cols=195 Identities=9% Similarity=-0.002 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
....+..+|..+...|++++|+..|++++...+.+ ..++.++|.+|...|++++|+..+++++++. |.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~ 70 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELD--------GQ 70 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------TT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CC
Confidence 35567788888999999999999999988865543 4588899999999999999999999988753 45
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK 489 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (630)
...+++.+|.++...|++++|+..|++++.+.+........ .++..+ . ..++..+..... ...+.
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~--~~~~~~--~------~~~~~~~~~~~~-----~~~~~ 135 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSAL--R------IAKKKRWNSIEE-----RRIHQ 135 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS--HHHHHH--H------HHHHHHHHHHHH-----TCCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH--HHHHHH--H------HHHHHHHHHHHH-----HHHhh
Confidence 56788999999999999999999999999987654321111 111111 1 111111111111 11122
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSM-GSYTLAIEFQQRAID 564 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 564 (630)
.+. +...++.++ .|++++|++.++++++ .+|........++.++... +.+++|.++|.++.+
T Consensus 136 ~~~---i~~~l~~l~--~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 136 ESE---LHSYLTRLI--AAERERELEECQRNHE--------GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCH---HHHHHHHHH--HHHHHHHHTTTSGGGT--------TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hHH---HHHHHHHHH--HHHHHHHHHHHHhhhc--------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333 334445543 6889999999988877 3344445566666666655 567777777777754
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.27 E-value=1.5e-11 Score=113.96 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=132.8
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
+..+..+|..+...|++++|+..|++++.. .|....+++++|.+|...|++++|+..+++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 567788999999999999999999999998 2333577889999999999999999999999843
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 006812 237 KELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (630)
+|....+++.+|.+|...|++++|+..|++++++.+.....-.... ... ... .++..+..
T Consensus 68 --------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~-~~~----~~~------~~~~~~~~- 127 (281)
T 2c2l_A 68 --------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI-PSA----LRI------AKKKRWNS- 127 (281)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH-HHH----HHH------HHHHHHHH-
T ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH-HHH----HHH------HHHHHHHH-
Confidence 3445688999999999999999999999999998875311111111 111 111 11111111
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHH
Q 006812 317 SQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ-EKFADAKRCLEIA 395 (630)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a 395 (630)
.... ..+....+...++.++ .|++++|++.++++++..+.+ ......++.++... +.+++|...|.++
T Consensus 128 ---~~~~--~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 128 ---IEER--RIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDD----GHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp ---HHHT--CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH----HHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---HHHH--HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 1122222333344443 689999999999888764432 23444555555554 6788888888876
Q ss_pred HH
Q 006812 396 CG 397 (630)
Q Consensus 396 ~~ 397 (630)
.+
T Consensus 197 ~~ 198 (281)
T 2c2l_A 197 DE 198 (281)
T ss_dssp SC
T ss_pred hc
Confidence 54
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.26 E-value=1.5e-11 Score=107.52 Aligned_cols=160 Identities=11% Similarity=0.035 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCC----
Q 006812 212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNS---- 287 (630)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---- 287 (630)
..+......|.+++|.+.+....+ ..+..+..+..+|..+...|+|++|+.+|++++.+.+.......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDE--------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL 80 (198)
T ss_dssp -------------CCCSGGGCCHH--------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHH--------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 455666778888888887765442 33445788999999999999999999999999987654210000
Q ss_pred ----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 288 ----VEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 288 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
.....++.++|.++...|++++|+.++++++.+ .|....++..+|.+|...|++++|+..|++++...+.
T Consensus 81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 012477889999999999999999999999987 6777889999999999999999999999999997665
Q ss_pred cchHHHHHHHHHHHHHHhhccHHHHH
Q 006812 364 ESETRALVFISMGKALCNQEKFADAK 389 (630)
Q Consensus 364 ~~~~~~~~~~~la~~~~~~~~~~~A~ 389 (630)
+ ..++..++.++...++..++.
T Consensus 155 ~----~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 155 N----LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp C----HHHHHHHHHHHHHHHHHHC--
T ss_pred c----HHHHHHHHHHHHHHHHHHHHH
Confidence 4 447888899888888877766
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.26 E-value=9.5e-11 Score=98.89 Aligned_cols=105 Identities=20% Similarity=0.110 Sum_probs=93.2
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
...+..+..+|.++...|++++|+.+|++++++ .|....++.++|.+|...|++++|+.+|++++.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 74 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV----- 74 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 344678899999999999999999999999984 3556779999999999999999999999999995
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
+|....+++++|.+|..+|++++|+.+|++++++....
T Consensus 75 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 75 ---DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 35556899999999999999999999999999886543
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.26 E-value=9.6e-12 Score=123.84 Aligned_cols=159 Identities=14% Similarity=0.016 Sum_probs=125.1
Q ss_pred hhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC--------Cchh
Q 006812 381 NQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ--------HSEG 452 (630)
Q Consensus 381 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~ 452 (630)
..+++++|+..++.++... +..+..+..+|..+...|++++|+..|++++.+........ ....
T Consensus 246 ~l~~~~~A~~~~~~~~~~~--------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEK--------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHH--------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 3455666666666655543 67788999999999999999999999999999865431100 0014
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 532 (630)
.++.++|.+|..+|++++|+.+|++++++ +|....+++++|.+|..+|++++|+..|+++++ .+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--------l~ 381 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--------VN 381 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------TC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------hC
Confidence 68899999999999999999999999994 356678999999999999999999999999998 45
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 006812 533 ADSIEACQNLSKAYSSMGSYTLAIE-FQQRAI 563 (630)
Q Consensus 533 ~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 563 (630)
|....++..++.++...|++++|.. .|++++
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777899999999999999988764 444444
No 152
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.26 E-value=1.5e-10 Score=97.43 Aligned_cols=112 Identities=14% Similarity=0.012 Sum_probs=95.1
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCC--------ChhHHHHHHHhhHHHhhccChHHHHHHH
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRP--------SLLVAMCLQVMGSANYSFKRFSDSLGYL 180 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 180 (630)
...+..+...|..++..| +|++|+..|.+++.+.+.....+.+ .+..+.++.++|.+|..+|++++|+..+
T Consensus 8 ~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQK-DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345678899999999999 9999999999999997654322221 3456789999999999999999999999
Q ss_pred HHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 181 SKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIK 237 (630)
Q Consensus 181 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 237 (630)
++++.+ .|....+++.+|.++..+|++++|+..|++++++.
T Consensus 87 ~~al~~----------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 87 SEVLKR----------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhc----------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 999998 34446788999999999999999999999999764
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.23 E-value=7.8e-11 Score=95.38 Aligned_cols=123 Identities=11% Similarity=0.034 Sum_probs=105.1
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812 406 SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES 485 (630)
Q Consensus 406 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (630)
..+.....+..+|.++...|++++|+.++++++.. .+ ....++..+|.++...|++++|+.++++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 34567789999999999999999999999999874 21 23568899999999999999999999999984
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 006812 486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS 551 (630)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 551 (630)
.|....++..+|.++...|++++|+.+|++++.+ .|....++..++.++...|+
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 3455678999999999999999999999999984 35556788999999988764
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.23 E-value=2.2e-10 Score=96.38 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006812 205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEED----------SRELGVANRDLAEAFVAVLNFKEALPFGLK 274 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 274 (630)
..+..+..+|..+...|+|++|+..|.+++.+.......+ .|....++.++|.+|...|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4467788999999999999999999999999866542111 344566777777777777777777777777
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812 275 ALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320 (630)
Q Consensus 275 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 320 (630)
++.+.+ ....+++.+|.+|...|++++|+..|++++.+
T Consensus 89 al~~~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLKREE--------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCC--------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 777532 23456667777777777777777777777666
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.22 E-value=4e-11 Score=119.34 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=126.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCC-------CCHHHH
Q 006812 219 AMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGH-------NSVEVA 291 (630)
Q Consensus 219 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 291 (630)
..+++++|+..|+.+++. .|..+..+..+|.+++..|+|++|+..|++++++.+..... ..+...
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 456677788777776643 35557889999999999999999999999999987742100 012346
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHH
Q 006812 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALV 371 (630)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 371 (630)
.++.++|.+|..+|++++|+.++++++.+ .|....+++++|.+|..+|++++|+..|++++++.+.+ ..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~----~~a 387 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN----KAA 387 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHH
Confidence 78999999999999999999999999998 67788999999999999999999999999999976544 348
Q ss_pred HHHHHHHHHhhccHHHHHHH
Q 006812 372 FISMGKALCNQEKFADAKRC 391 (630)
Q Consensus 372 ~~~la~~~~~~~~~~~A~~~ 391 (630)
+..++.++...+++++|...
T Consensus 388 ~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 388 RLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888653
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.22 E-value=2.7e-10 Score=92.12 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
..+....++..+|.++...|++++|+.+|+++++..+ ....++..+|.++...|++++|+.++++++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--------KDAKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 3456678899999999999999999999999987532 23577889999999999999999999999987
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc
Q 006812 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK 384 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 384 (630)
.|....++..+|.++...|++++|+.++++++...+.+. .++..++.++...|+
T Consensus 80 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ---EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK----EAADGYQRCMMAQYN 133 (133)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT----HHHHHHHHHHHHHTC
T ss_pred ---CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhcC
Confidence 566788999999999999999999999999998765543 377888888877653
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.22 E-value=1.8e-10 Score=92.88 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Q 006812 407 PEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESF 486 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (630)
.+.....+..+|.++...|++++|+.++++++.. .+. ...++..+|.++...|++++|+.++++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 75 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICI----- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----
Confidence 3567789999999999999999999999999986 222 2468899999999999999999999999984
Q ss_pred CCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH
Q 006812 487 GPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSY 552 (630)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 552 (630)
.|....++..+|.++...|++++|+.+|++++.+ .|....++..++.++...|++
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 3445678999999999999999999999999985 244456889999999988875
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.21 E-value=3.4e-10 Score=95.47 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHc
Q 006812 245 SRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTW 324 (630)
Q Consensus 245 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 324 (630)
.+..+..+..+|.++...|++++|+.+|++++++.+ ....++.++|.+|...|++++|+.+|++++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--------ANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 455678899999999999999999999999998754 23577889999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 325 GLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 325 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
.|....++..+|.+|...|++++|+..|++++...+.+..
T Consensus 75 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 75 --DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred --CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 6777899999999999999999999999999998877654
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.21 E-value=3.9e-10 Score=91.80 Aligned_cols=106 Identities=25% Similarity=0.238 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 530 (630)
.+..+..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+..+++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4568899999999999999999999999984 3555678999999999999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 531 HHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 531 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
+|....++..+|.++...|++++|+..|++++++.+.....
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 113 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHH
Confidence 34556799999999999999999999999999998874433
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.21 E-value=6.8e-12 Score=125.34 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 448 (630)
+..+..+|.++...|++++|+.++++++++. |....++.++|.+|..+|++++|+.++++++++ .+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p- 71 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DK- 71 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CT-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CC-
Confidence 4456677788888899999999999988874 455688899999999999999999999999885 22
Q ss_pred CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHHcCChhHHHHHHH--------
Q 006812 449 HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAA--YLELDRPQSAAQVFA-------- 518 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~-------- 518 (630)
....++.++|.+|..+|++++|+.+|++++++ . |....++..++.+ +..+|++++|++.++
T Consensus 72 -~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~---p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 142 (477)
T 1wao_1 72 -KYIKGYYRRAASNMALGKFRAALRDYETVVKV-----K---PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 142 (477)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----S---TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTC
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhh
Confidence 23567889999999999999999999999884 2 3333466677777 888899999999998
Q ss_pred ---HHHHHHHHhcCCCCHH---HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCC----------------Cch
Q 006812 519 ---FAKDIMDVSLGPHHAD---SIEACQNLSKAYSSMGS--YTLAIEFQQRAIDAWESHGP----------------SAQ 574 (630)
Q Consensus 519 ---~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~----------------~~~ 574 (630)
+++.+.....++..+. ....+..+...+...+. .+++..++.++.+++..... +.+
T Consensus 143 ~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~~~~~~~~~~~~vigDiH 222 (477)
T 1wao_1 143 LDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTH 222 (477)
T ss_dssp CTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCSSCEEEEECBCT
T ss_pred hhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeEEeecCCCcceEEEeCCC
Confidence 6665554444444443 22344455555555554 45566788899888876332 356
Q ss_pred hHHHHHHHHHHHH
Q 006812 575 DELREARRLLEQL 587 (630)
Q Consensus 575 ~~~~~A~~~~~~~ 587 (630)
|++....++++..
T Consensus 223 G~~~~l~~~l~~~ 235 (477)
T 1wao_1 223 GQFYDLLNIFELN 235 (477)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 7776666666543
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.20 E-value=4.1e-10 Score=92.20 Aligned_cols=109 Identities=14% Similarity=0.009 Sum_probs=92.6
Q ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
..|.....+..+|.++...|++++|+.+|++++...+ ....++..+|.++...|++++|+.+|++++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--------YDARYFLGLGACRQSLGLYEQALQSYSYGALM--- 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 4466678889999999999999999999999988543 33567888999999999999999999999887
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
.|....++..+|.++...|++++|+..|++++...+.++.
T Consensus 82 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 82 ---DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred ---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 6777788899999999999999999999999988775543
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.19 E-value=4.5e-10 Score=90.45 Aligned_cols=124 Identities=17% Similarity=0.058 Sum_probs=106.4
Q ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 244 DSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 244 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
..+.....+..+|.++...|++++|+.++++++...+ ....++..+|.++...|++++|+.++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP--------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 4466678899999999999999999999999998643 22567889999999999999999999999886
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccH
Q 006812 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKF 385 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~ 385 (630)
.|....++..+|.++...|++++|+..+++++...+.+ ..++..++.++...|++
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN----ETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTTC
T ss_pred ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHHhcC
Confidence 56667889999999999999999999999999976554 34788888888887764
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.18 E-value=1.5e-08 Score=93.82 Aligned_cols=236 Identities=10% Similarity=0.002 Sum_probs=172.1
Q ss_pred HHhcCHH-HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHHHHHcCCCh
Q 006812 260 VAVLNFK-EALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE----------HQKALEQNELSQKVLKTWGLSS 328 (630)
Q Consensus 260 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~ 328 (630)
...|.++ +|+.++.+++.+. |....+++..+.+....+. +++++.+++.++.. +|
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~------~P 105 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NP 105 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CT
T ss_pred HHcCCCCHHHHHHHHHHHHHC--------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh------CC
Confidence 3566666 7899999988753 3445667777777776665 67888888887775 78
Q ss_pred hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhcCC
Q 006812 329 ELLRAEIDAANMQIALGK--FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK-FADAKRCLEIACGILDKKETI 405 (630)
Q Consensus 329 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~ 405 (630)
....++...+.++...+. +++++.++.++++..+++ ..+|...+.+....|. +++++.++.+++...
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN----y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~------ 175 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN----FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------ 175 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC------
Confidence 889999999999999994 999999999999977666 4488999999999998 699999999998764
Q ss_pred CcHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc------
Q 006812 406 SPEEVADAYSEISMQYESM--------------NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT------ 465 (630)
Q Consensus 406 ~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~------ 465 (630)
|....+|...+.++... +.++++++++.+++.+ .+. +..+|+.+..++...
T Consensus 176 --p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~--d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 176 --FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPN--DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp --SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STT--CHHHHHHHHHHHHSSSCGGGC
T ss_pred --CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCC--CHHHHHHHHHHHHhccCcccc
Confidence 45557888888888776 5688999999999986 222 244665555555444
Q ss_pred -----CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH---HcCChhHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 006812 466 -----GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYL---ELDRPQSAAQVFAFAKDIMDVSLGPHHADSIE 537 (630)
Q Consensus 466 -----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 537 (630)
+.++++++++++++++ .|+...++..++.+.. ..|..++...++.+.+++ +|....
T Consensus 247 ~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------Dp~r~~ 310 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------DPMRAA 310 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------CGGGHH
T ss_pred chHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------Ccchhh
Confidence 3467788888888773 2444445544444332 357778888888888874 455444
Q ss_pred HHHHHHH
Q 006812 538 ACQNLSK 544 (630)
Q Consensus 538 ~~~~la~ 544 (630)
-|..++.
T Consensus 311 ~y~d~~~ 317 (331)
T 3dss_A 311 YLDDLRS 317 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.17 E-value=4.6e-09 Score=97.63 Aligned_cols=242 Identities=6% Similarity=-0.048 Sum_probs=178.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhhc
Q 006812 205 IMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL-NFKEALPFGLKALEIHKKGL 283 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 283 (630)
.+..+...+..+....+..++|+..+.+++.+. |....+++..+.+....| .+++++.++.+++...+
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n--------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--- 120 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMN--------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--- 120 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC---
Confidence 344555555566666677789999999998654 444688999999999999 59999999999997543
Q ss_pred CCCCHHHHHHHHHHHHHHhcc-c-cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH--------HHHHH
Q 006812 284 GHNSVEVAHDRRLLGVIYSGL-E-EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFE--------EAINT 353 (630)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~ 353 (630)
....+++..+.+.... + ++++++.++.+++.. +|....++...+.+....|.++ +++++
T Consensus 121 -----Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 121 -----KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp -----CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 3457788888888887 7 889999988887764 7888999999999998888887 99999
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCC
Q 006812 354 LKGVVRQTEKESETRALVFISMGKALCNQEK-------FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNE 426 (630)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 426 (630)
+.++++..+.+ ..+|...+.++...++ ++++++++.+++.+. |....+|+.+..++...|+
T Consensus 190 ~~k~I~~dp~N----~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--------P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 190 CNEMLRVDGRN----NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--------PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHCTTC----HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCC----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCC
Confidence 99999976555 4489999999988886 788999999988775 4555788888888877665
Q ss_pred HHH------------HHH-HHHHHHHHHHhCCCCC------CchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 427 FET------------AIS-LLKRTLALLEKLPQAQ------HSEGSVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 427 ~~~------------A~~-~~~~al~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
... .+. .+....+.+....+.. .....++.-++.+|...|+.++|.++++...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 400 000 0112222222222221 23456778999999999999999999988654
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.17 E-value=2.1e-11 Score=121.79 Aligned_cols=178 Identities=13% Similarity=0.055 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812 289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR 368 (630)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 368 (630)
..+..+..+|..+...|++++|+.+|++++++ .|....++.++|.+|..+|++++|+..++++++..+..
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---- 73 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---- 73 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----
Confidence 44556677889999999999999999999998 67778999999999999999999999999999975443
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ--YESMNEFETAISLLK----------- 435 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~----------- 435 (630)
+.++.++|.+|..+|++++|+.++++++++. |....++..++.+ +...|++++|++.++
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 145 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 145 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhh
Confidence 5589999999999999999999999999874 2333566777777 888999999999999
Q ss_pred HHHHHHHhCCCCCCchh----HHHHHHHHHHHHcCChhh--HHHHHHHHHHHHHH
Q 006812 436 RTLALLEKLPQAQHSEG----SVSARIGWLLLLTGKVPQ--AIPYLESAAERLKE 484 (630)
Q Consensus 436 ~al~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~--A~~~~~~al~~~~~ 484 (630)
+++.+.....+...+.. .....+...+...+...+ +..++.++.++...
T Consensus 146 ~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 146 ESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp SSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 66665555444444431 223444555555555544 44477777777654
No 166
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=9.8e-10 Score=99.94 Aligned_cols=274 Identities=10% Similarity=-0.028 Sum_probs=175.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 006812 257 EAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEID 336 (630)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 336 (630)
.-.+..|+|..++.-..+ +.+..+.. ....+.++|..+|++.... ...| ...+...
T Consensus 21 kn~fy~G~yq~~i~e~~~--------~~~~~~~~--~~~~~~Rs~iAlg~~~~~~-------------~~~~-~~~a~~~ 76 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEK--------FSKVTDNT--LLFYKAKTLLALGQYQSQD-------------PTSK-LGKVLDL 76 (310)
T ss_dssp HHHHTTTCHHHHTHHHHT--------SSCCCCHH--HHHHHHHHHHHTTCCCCCC-------------SSST-THHHHHH
T ss_pred HHHHHhhHHHHHHHHHHh--------cCccchHH--HHHHHHHHHHHcCCCccCC-------------CCCH-HHHHHHH
Confidence 345678999888873221 12223332 3445567777788776311 1122 2223333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 006812 337 AANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSE 416 (630)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (630)
++..+ . ++ |+..+++.+...... ...+..+|.++...|++++|++++.+.+.... .+....++..
T Consensus 77 la~~~-~-~~---a~~~l~~l~~~~~~~----~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~------~~~~lea~~l 141 (310)
T 3mv2_B 77 YVQFL-D-TK---NIEELENLLKDKQNS----PYELYLLATAQAILGDLDKSLETCVEGIDNDE------AEGTTELLLL 141 (310)
T ss_dssp HHHHH-T-TT---CCHHHHHTTTTSCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC------STTHHHHHHH
T ss_pred HHHHh-c-cc---HHHHHHHHHhcCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CcCcHHHHHH
Confidence 33333 2 22 677777766532111 23456899999999999999999998754221 0256678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC--CchhHHHHHH--HHHHHHcC--ChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQ--HSEGSVSARI--GWLLLLTG--KVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
++.++..+|+.+.|.+.++++.+. .++ ..+-.+...+ +++....| ++++|..+|+++.+ ..
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--------~~ 208 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNA-----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--------TF 208 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--------TS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc-----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------hC
Confidence 999999999999999999998775 110 0012244444 44466666 99999999999765 34
Q ss_pred cc--HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006812 491 FG--VGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH--HADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 491 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
|. ....+.+ ++..+|++++|...++.+++.....-..+ .|+...++.+++.+...+|+ +|.++++++.+.
T Consensus 209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~- 282 (310)
T 3mv2_B 209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL- 282 (310)
T ss_dssp CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-
T ss_pred CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-
Confidence 44 2233333 89999999999999997766532210000 24566888899999999998 777777776654
Q ss_pred HHcCCCch--hHHHHHHHHHHHHHHHh
Q 006812 567 ESHGPSAQ--DELREARRLLEQLKIKA 591 (630)
Q Consensus 567 ~~~~~~~~--~~~~~A~~~~~~~~~~~ 591 (630)
.|+++ -++.+....|+++..+.
T Consensus 283 ---~P~hp~i~d~~~k~~~Fd~~~~ky 306 (310)
T 3mv2_B 283 ---DHEHAFIKHHQEIDAKFDELVRKY 306 (310)
T ss_dssp ---TCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ---CCCChHHHHHHHHHHHHHHHHHHh
Confidence 44443 45667777888876654
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.16 E-value=1.2e-08 Score=94.94 Aligned_cols=232 Identities=9% Similarity=-0.007 Sum_probs=171.6
Q ss_pred HHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhccc
Q 006812 166 ANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMG-RREEALEHLQKCLEIKELILEED 244 (630)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 244 (630)
+....+..++|+..+.+++.+ .|....+++..+.++...| .+++++.++.+++. .
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~----------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--------~ 118 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM----------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--------Q 118 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--------T
T ss_pred HHHhCCCCHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--------h
Confidence 333445567899999999998 4455678889999999999 59999999999884 3
Q ss_pred hHHHHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHH--------HHHHHH
Q 006812 245 SRELGVANRDLAEAFVAV-L-NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQ--------KALEQN 314 (630)
Q Consensus 245 ~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~ 314 (630)
+|....+++..+.+.... + ++++++.++.++++.. +....+++..+.+....|.++ ++++++
T Consensus 119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d--------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD--------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC--------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 455578899999999988 7 8999999999988643 334567778888888888877 899999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHH
Q 006812 315 ELSQKVLKTWGLSSELLRAEIDAANMQIALGK-------FEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFAD 387 (630)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 387 (630)
+++++. ++....++...+.+....+. ++++++++.+++...+.+.. +|+.+..++...|+...
T Consensus 191 ~k~I~~------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S----aW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 191 NEMLRV------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS----AWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHH------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCCSG
T ss_pred HHHHHh------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCCcc
Confidence 988887 78889999999999999887 79999999999997766643 77777777776665300
Q ss_pred ----------------H-HHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 388 ----------------A-KRCLEIACGILDKKET-ISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 388 ----------------A-~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
. ....+.++++.....+ ...+....++..++.+|...|+.++|.++++...+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0 0111111111111100 01123456888899999999999999999988654
No 168
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.16 E-value=1.2e-10 Score=99.74 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=102.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 006812 421 YESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNL 500 (630)
Q Consensus 421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 500 (630)
+...|++++|+..+++++.. .+. ...++..+|.++...|++++|+.+|++++.+. |....++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~-----~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA-----NPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAAL 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHH-----CCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh-----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHH
Confidence 34578999999999999986 222 34688999999999999999999999999853 4456688999
Q ss_pred HHH-HHHcCCh--hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 501 GAA-YLELDRP--QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 501 ~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
|.+ +...|++ ++|+.+|++++.+ +|....++..+|.+|...|++++|+.+|++++++.+.
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999 8899999 9999999999985 3455578999999999999999999999999976443
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.16 E-value=9.2e-11 Score=92.73 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCC
Q 006812 453 SVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 532 (630)
..++.+|..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++++ +
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 35688999999999999999999999983 4667789999999999999999999999999995 3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 533 ADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 533 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
|+...++..+|.+|...|++++|+..|++++++.+.
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 555679999999999999999999999999976543
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.15 E-value=8.6e-08 Score=88.76 Aligned_cols=224 Identities=10% Similarity=-0.017 Sum_probs=167.1
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHhhhcCC
Q 006812 217 KTAMGRRE-EALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLN----------FKEALPFGLKALEIHKKGLGH 285 (630)
Q Consensus 217 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 285 (630)
....|.++ +|+.++.+++. .+|....+++..+.+....+. +++++.++..++...+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~--------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P----- 105 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP----- 105 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHcCCCCHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-----
Confidence 34566665 78999998884 445556788888888877766 6788888888887543
Q ss_pred CCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhh
Q 006812 286 NSVEVAHDRRLLGVIYSGLE--EHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK-FEEAINTLKGVVRQTE 362 (630)
Q Consensus 286 ~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~ 362 (630)
....+++..+.+....| .+++++.++.+++.. +|....++...+.+....|. ++++++++.++++..+
T Consensus 106 ---Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 106 ---KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp ---TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred ---CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 33567888889988888 489999999999987 78889999999999999998 6999999999998766
Q ss_pred hcchHHHHHHHHHHHHHHhh--------------ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHc----
Q 006812 363 KESETRALVFISMGKALCNQ--------------EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESM---- 424 (630)
Q Consensus 363 ~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 424 (630)
.+. .+|...+.++... +.++++++++.+++.+. |....+|+.+..++...
T Consensus 177 ~N~----SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--------P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 177 SNY----SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp CCH----HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHSSSCGG
T ss_pred CCH----HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhccCcc
Confidence 553 3888888887776 67899999999998875 45556776555555444
Q ss_pred -------CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHH---HcCChhhHHHHHHHHHHH
Q 006812 425 -------NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLL---LTGKVPQAIPYLESAAER 481 (630)
Q Consensus 425 -------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~ 481 (630)
+.++++++++++++++. ++. ..++..++.+.. ..|..++...++.+.+++
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~-----pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELE-----PEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHC-----TTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhC-----ccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45788899999888872 222 223333332222 356777888888888874
No 171
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.14 E-value=5.7e-10 Score=95.46 Aligned_cols=119 Identities=14% Similarity=0.221 Sum_probs=79.1
Q ss_pred HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-H
Q 006812 343 ALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQ-Y 421 (630)
Q Consensus 343 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~ 421 (630)
..|++++|+..+++++...+.+ ..++..+|.++...|++++|+.++++++.+. |....++..+|.+ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAALATVLY 89 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHH
Confidence 4566677777777777654433 3367777777777777777777777777665 2334567777777 6
Q ss_pred HHcCCH--HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006812 422 ESMNEF--ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAE 480 (630)
Q Consensus 422 ~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (630)
...|++ ++|+.++++++.+ .+. ...++..+|.++...|++++|+.+|+++++
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~-----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALAL-----DSN--EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHh-----CCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 677777 7888888777775 221 234667778888888888888888887777
No 172
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.13 E-value=1e-09 Score=87.42 Aligned_cols=118 Identities=24% Similarity=0.329 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCC
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPK 489 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (630)
...++..+|.++...|++++|+.++++++... +. ...++..+|.++...|++++|+.++++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 46788999999999999999999999999862 22 2457899999999999999999999999984
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMG 550 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 550 (630)
.|....++..+|.++...|++++|+.++++++.+ +|....++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 2444668899999999999999999999999884 2444568888888887654
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.11 E-value=1.5e-09 Score=104.40 Aligned_cols=130 Identities=15% Similarity=0.079 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELIL--------EEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (630)
+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.+|...|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 46678899999999999999999999998765420 0123444555556666666666666666666555543
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH
Q 006812 279 HKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEA 350 (630)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 350 (630)
. +....+++.+|.+|..+|++++|+.+|++++++ .|....++..++.++...++++++
T Consensus 303 ~--------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 D--------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 122344555555555555555555555555554 333344444444444444444433
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.11 E-value=1.6e-09 Score=86.98 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812 413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491 (630)
Q Consensus 413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (630)
.++.+|.++...|++++|+..|++++... +.++ ...++..+|.++...|++++|+.+|++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 46788999999999999999999998862 2222 2358899999999999999999999999984 34555
Q ss_pred cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 006812 492 GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 492 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 524 (630)
....++..+|.++...|++++|+..|++++...
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 557889999999999999999999999999853
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.10 E-value=2.1e-09 Score=86.51 Aligned_cols=107 Identities=22% Similarity=0.272 Sum_probs=91.4
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
..+.++..+|.++...|++++|+.+|++++.. .|....+++.+|.++...|++++|+.++++++
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL----------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35677889999999999999999999999987 12234678899999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI 278 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 278 (630)
++.+.. ..+.+....++..+|.++...|++++|+.+|++++++
T Consensus 66 ~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 66 EVGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccc-chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 887643 2334445788999999999999999999999999985
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.09 E-value=2e-09 Score=87.54 Aligned_cols=103 Identities=11% Similarity=0.037 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHH
Q 006812 289 EVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETR 368 (630)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 368 (630)
..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++...+.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---- 76 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---- 76 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh----
Confidence 34677889999999999999999999999987 66778899999999999999999999999999976554
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Q 006812 369 ALVFISMGKALCNQEKFADAKRCLEIACGILDK 401 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 401 (630)
..++..+|.++...|++++|+.++++++.+...
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 458999999999999999999999999998865
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.09 E-value=1.1e-09 Score=105.25 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhC------CCCChhHHHHHHHhhHHHhhccChHHHHHHHHHH
Q 006812 110 ELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERN------NRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKA 183 (630)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (630)
..+..+..+|..++..| ++++|+..|++++++.+..... ....+..+.++.++|.+|..+|++++|+.+++++
T Consensus 221 ~~a~~~~~~g~~~~~~g-~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQ-NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34577899999999999 9999999999999976542000 0013567889999999999999999999999999
Q ss_pred HHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Q 006812 184 NRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVL 263 (630)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 263 (630)
+.+ .|....+++.+|.+|..+|++++|+..|++++++. |....++..++.++...+
T Consensus 300 l~~----------------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 300 LEI----------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HTT----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHH
T ss_pred HHh----------------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHH
Confidence 987 23345788999999999999999999999999764 222567888899998888
Q ss_pred CHHHHHH
Q 006812 264 NFKEALP 270 (630)
Q Consensus 264 ~~~~A~~ 270 (630)
+++++..
T Consensus 356 ~~~~a~k 362 (370)
T 1ihg_A 356 AQKDKEK 362 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 178
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.08 E-value=2.6e-09 Score=85.03 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHH
Q 006812 290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRA 369 (630)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 369 (630)
...++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...+.+ .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~ 77 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----A 77 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----H
Confidence 3567889999999999999999999999876 45567789999999999999999999999999875544 4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC
Q 006812 370 LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN 425 (630)
Q Consensus 370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 425 (630)
.++..+|.++...|++++|..++++++... |....++..++.++...|
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhcc
Confidence 478899999999999999999999998764 344467778888776554
No 179
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=3.6e-08 Score=89.71 Aligned_cols=179 Identities=10% Similarity=-0.006 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh--cchHHH
Q 006812 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK--ESETRA 369 (630)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~ 369 (630)
..+..+|.++...|++++|+.++.+.+.. +.......++..++.++..+|+.+.|.+.++++.+..+. ......
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 33468999999999999999999876442 112478889999999999999999999999998775441 011222
Q ss_pred HHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhhcCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 006812 370 LVFISMGKALCNQE--KFADAKRCLEIACGILDKKETISPEE--VADAYSEISMQYESMNEFETAISLLKRTLALLEKLP 445 (630)
Q Consensus 370 ~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 445 (630)
.+...-+++....| ++.+|...|+++.... |+ ....+.+ ++..+|++++|...++..++......
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTF--------PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence 23333354466556 8999999999864432 22 2233333 89999999999999998777654431
Q ss_pred CC---CCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812 446 QA---QHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFG 492 (630)
Q Consensus 446 ~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (630)
.. ++.++.++.+++.+....|+ +|.++++++.+ ..|+||.
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~hp~ 288 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-----LDHEHAF 288 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH-----TTCCCHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH-----hCCCChH
Confidence 11 12345678888888888997 88999998888 4456664
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.08 E-value=3.5e-09 Score=84.99 Aligned_cols=101 Identities=17% Similarity=0.044 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE 289 (630)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (630)
++.+|.++...|++++|+..|+++++.. ++++....++..+|.++...|++++|+.+|++++...+ +++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~ 74 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-----THDK 74 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-----CCcc
Confidence 4567777777777777777777776543 34444456677777777777777777777777776543 2333
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812 290 VAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320 (630)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 320 (630)
...++..+|.++...|++++|+.+|++++..
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556667777777777777777777666554
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.07 E-value=4.4e-09 Score=84.54 Aligned_cols=123 Identities=13% Similarity=0.142 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHH
Q 006812 330 LLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEE 409 (630)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 409 (630)
....+..+|.++...|++++|+.++++++...+.+ ..++..+|.++...|++++|+.++++++...... ....+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 77 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-chhHHH
Confidence 45677788888888999999999999888865443 4578889999999999999999999998887543 223334
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHc
Q 006812 410 VADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLT 465 (630)
Q Consensus 410 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 465 (630)
...++..+|.++...|++++|+.+|++++.+ .+ .......++.+....
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE-----HR---TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CC---CHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999986 22 233555666555443
No 182
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.07 E-value=3.1e-09 Score=83.58 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
+..+..+|..+...|++++|+..+++++.. .+. ...++..+|.++...|++++|+.+++++++. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------K 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------C
Confidence 467889999999999999999999999986 222 3458899999999999999999999999984 3
Q ss_pred ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812 491 FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY 546 (630)
Q Consensus 491 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 546 (630)
|....++..+|.++...|++++|..++++++++ .|....++..++.+.
T Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 69 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 455678999999999999999999999999873 344446667776654
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.06 E-value=6.7e-10 Score=87.73 Aligned_cols=98 Identities=11% Similarity=-0.021 Sum_probs=84.2
Q ss_pred HHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 006812 159 CLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKE 238 (630)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 238 (630)
.++.+|..+...|++++|+..|++++.. .|....+++.+|.++...|++++|+..|++++++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK----------------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3577999999999999999999999998 34446788899999999999999999999999654
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 239 LILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
|....++..+|.+|...|++++|+..+++++++.+
T Consensus 82 -------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 82 -------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33357899999999999999999999999998655
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.05 E-value=3.1e-10 Score=108.02 Aligned_cols=145 Identities=14% Similarity=0.022 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-CC---------chhHHHHHHHHHHHHcCChhhHHHHHHH
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQA-QH---------SEGSVSARIGWLLLLTGKVPQAIPYLES 477 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (630)
+..+..+..+|..+...|++++|+..|++++.+....... .. ....++.++|.+|..+|++++|+.++++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556778899999999999999999999999873221000 00 0013778899999999999999999999
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhcCCHHHHH
Q 006812 478 AAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY-SSMGSYTLAI 556 (630)
Q Consensus 478 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~ 556 (630)
++++ +|....+++++|.+|..+|++++|+..|++++.+ .|....++..++.+. ...+..+++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9884 3556678889999999999999999999998874 355556777888774 4556677788
Q ss_pred HHHHHHHHHHHH
Q 006812 557 EFQQRAIDAWES 568 (630)
Q Consensus 557 ~~~~~al~~~~~ 568 (630)
..|.+++...+.
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 888888765443
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.01 E-value=7.7e-10 Score=87.01 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=75.7
Q ss_pred HcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006812 464 LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLS 543 (630)
Q Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 543 (630)
.+|++++|+.+|++++++ +.++|....++.++|.+|..+|++++|+.+|++++++ +|+...++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999982 2236888899999999999999999999999999985 355568999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Q 006812 544 KAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
.++...|++++|+.+++++++..
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999764
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.00 E-value=1e-09 Score=104.47 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCC-------ChhHHHHHHHhhHHHhhccChHHHHHHHH
Q 006812 109 TELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRP-------SLLVAMCLQVMGSANYSFKRFSDSLGYLS 181 (630)
Q Consensus 109 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (630)
+..+..+..+|..++..| ++++|+..|++++.+.+........ ......++.++|.+|..+|+|++|+.+|+
T Consensus 176 ~~~a~~~~~~g~~~~~~g-~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEE-KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHTCSSS-CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456778899999999999 9999999999999886443100000 00011378999999999999999999999
Q ss_pred HHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH-HH
Q 006812 182 KANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEA-FV 260 (630)
Q Consensus 182 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~ 260 (630)
+++.+ .|....+++++|.+|..+|++++|+..|++++++. |....++..++.+ ..
T Consensus 255 ~al~~----------------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 255 IVLTE----------------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHH
Confidence 99998 23345788999999999999999999999998654 3335667778877 44
Q ss_pred HhcCHHHHHHHHHHHHHHHh
Q 006812 261 AVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~~ 280 (630)
..+..+++...|.+++...+
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHhhCCCC
Confidence 56778888889998887655
No 187
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.99 E-value=7.4e-09 Score=81.36 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812 291 AHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRAL 370 (630)
Q Consensus 291 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 370 (630)
+..+..+|..+...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++...+.+ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~ 73 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GK 73 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc----HH
Confidence 456788999999999999999999999886 56668899999999999999999999999999976544 45
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812 371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQY 421 (630)
Q Consensus 371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 421 (630)
++..+|.++...|++++|..++++++... |....++..++.+.
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHE--------ANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHhh
Confidence 88999999999999999999999987653 23345556665543
No 188
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.6e-09 Score=86.62 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhc
Q 006812 204 PIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGL 283 (630)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 283 (630)
+.....++.+|..+...|++++|+.+|++++++. ++++....++..+|.+|...|++++|+.++++++.+.+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--- 96 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--- 96 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS---
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc---
Confidence 3445777889999999999999999999888532 34444577888889999999999999999888887633
Q ss_pred CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812 284 GHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320 (630)
Q Consensus 284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 320 (630)
+ ...++..+|.++...|++++|+.++++++.+
T Consensus 97 --~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 97 --G---DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp --C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --c---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1 2456778888888888888888888887776
No 189
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.5e-09 Score=87.31 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcC
Q 006812 246 RELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWG 325 (630)
Q Consensus 246 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 325 (630)
+..+..+..+|..+...|++++|+.+|++++++.+ +++....++..+|.++...|++++|+.++++++.+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 94 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----- 94 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence 34467889999999999999999999999987432 33345788999999999999999999999999887
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812 326 LSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKES 365 (630)
Q Consensus 326 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 365 (630)
.|....++..+|.++...|++++|+.++++++...+.+.
T Consensus 95 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 95 -DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp -TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred -CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 556688899999999999999999999999998766543
No 190
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.97 E-value=1.1e-09 Score=85.22 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
..++..+|.++...|++++|+.++++++++ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 356788999999999999999999999984 2445668899999999999999999999999984
Q ss_pred CHH--HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 006812 532 HAD--SIEACQNLSKAYSSM-GSYTLAIEFQQRAIDA 565 (630)
Q Consensus 532 ~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 565 (630)
.|. ...++..+|.++... |++++|++++++++..
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 344 557899999999999 9999999999998754
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.91 E-value=1.8e-09 Score=86.88 Aligned_cols=107 Identities=21% Similarity=0.121 Sum_probs=87.0
Q ss_pred HHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHHHHHhcCCCC
Q 006812 463 LLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRP----------QSAAQVFAFAKDIMDVSLGPHH 532 (630)
Q Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 532 (630)
.+.+.|++|++.+++++++ +|..+.++.++|.++...+++ ++|+..|++++++ +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 3456789999999999983 577788999999999999876 4999999999995 4
Q ss_pred HHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812 533 ADSIEACQNLSKAYSSMG-----------SYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK 590 (630)
Q Consensus 533 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~ 590 (630)
|+...+++++|.+|..+| ++++|+++|++|+++-+ ....+.+++++..+..+.
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P-----~~~~y~~al~~~~ka~el 140 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP-----DNTHYLKSLEMTAKAPQL 140 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHTHHHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHhCHhc
Confidence 667789999999999885 89999999999998733 235677777777665443
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.88 E-value=7.5e-09 Score=81.26 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=78.0
Q ss_pred HhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 006812 261 AVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANM 340 (630)
Q Consensus 261 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 340 (630)
..|++++|+.+|++++++. .+.|....++.++|.+|...|++++|+.++++++++ .|....++..+|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHHHHHHH
Confidence 4689999999999999741 124667788999999999999999999999999987 67778899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhhcc
Q 006812 341 QIALGKFEEAINTLKGVVRQTEKES 365 (630)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~~~~~ 365 (630)
+...|++++|+..+++++...+.++
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999999998776554
No 193
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.86 E-value=5.4e-09 Score=81.31 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCC
Q 006812 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKH 490 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (630)
..++..+|.++...|++++|+.++++++.+ .+. ...++..+|.++...|++++|+.++++++++ .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~ 70 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINV--------I 70 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------S
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 456788999999999999999999999986 222 3457899999999999999999999999983 3
Q ss_pred cc--HHHHHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 006812 491 FG--VGYIYNNLGAAYLEL-DRPQSAAQVFAFAKD 522 (630)
Q Consensus 491 ~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~ 522 (630)
|. ...++..+|.++... |++++|+.++++++.
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 45 677899999999999 999999999999976
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=4.7e-08 Score=99.32 Aligned_cols=174 Identities=8% Similarity=0.012 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 006812 346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK----------FADAKRCLEIACGILDKKETISPEEVADAYS 415 (630)
Q Consensus 346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (630)
..++|+..+.+++...+++ ..+|+..+.++...|+ +++++.++++++... |....+|.
T Consensus 44 ~~eeal~~~~~~l~~nP~~----~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--------pK~y~aW~ 111 (567)
T 1dce_A 44 LDESVLELTSQILGANPDF----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--------PKSYGTWH 111 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred CCHHHHHHHHHHHHHCchh----HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 3467899999999866555 4589999999999888 999999999998765 56668999
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHhcCCCCcc
Q 006812 416 EISMQYESMN--EFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG-KVPQAIPYLESAAERLKESFGPKHFG 492 (630)
Q Consensus 416 ~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (630)
..+.++...| +++++++++.+++++ ++ ....+|...+.+....| .++++++++.++++ .+|.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~-----d~--~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--------~~p~ 176 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEA-----DE--RNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--------RNFS 176 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHH-----CT--TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--------TTCC
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhh-----cc--ccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--------HCCC
Confidence 9999999999 779999999999997 22 23568899999999999 89999999999987 5677
Q ss_pred HHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 006812 493 VGYIYNNLGAAYLEL--------------DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTL 554 (630)
Q Consensus 493 ~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 554 (630)
...+|+..+.++... +.+++|++++.+|+.+ +|+...+|+.++.++...+++++
T Consensus 177 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCCccc
Confidence 788999999999885 5578999999999884 35555799999999999888555
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.84 E-value=5.4e-08 Score=98.87 Aligned_cols=175 Identities=9% Similarity=-0.065 Sum_probs=147.0
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 006812 305 EEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGK----------FEEAINTLKGVVRQTEKESETRALVFIS 374 (630)
Q Consensus 305 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 374 (630)
...++|++.+++++.+ +|....++...+.++...|+ +++++..+.+++...+++ ..+|..
T Consensus 43 ~~~eeal~~~~~~l~~------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----y~aW~h 112 (567)
T 1dce_A 43 ELDESVLELTSQILGA------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----YGTWHH 112 (567)
T ss_dssp CCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred CCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHH
Confidence 3446789999999988 88899999999999999998 999999999999976665 448999
Q ss_pred HHHHHHhhc--cHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCCCCch
Q 006812 375 MGKALCNQE--KFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN-EFETAISLLKRTLALLEKLPQAQHSE 451 (630)
Q Consensus 375 la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~ 451 (630)
.+.++...+ ++++++.++++++++. |....+|...+.+....| .++++++++.++++. +...
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-------~p~n 177 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-------NFSN 177 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-------TCCC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------CCCC
Confidence 999999999 7799999999999875 455689999999999999 899999999888763 2334
Q ss_pred hHHHHHHHHHHHHc--------------CChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH
Q 006812 452 GSVSARIGWLLLLT--------------GKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS 512 (630)
Q Consensus 452 ~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 512 (630)
..+|...+.++... +.+++|++++.+++.+ .|....+|+.++.++...+++++
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCCccc
Confidence 57889999988875 5578899999999884 35555688999999999888666
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.83 E-value=3.4e-08 Score=77.18 Aligned_cols=87 Identities=20% Similarity=0.129 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 006812 469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS 548 (630)
Q Consensus 469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 548 (630)
++|+..|+++++ ..|....++..+|.+|...|++++|+.+|++++.+ +|....++..+|.+|..
T Consensus 2 ~~a~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLA--------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHT--------TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence 468888888887 34666789999999999999999999999999984 35556789999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCC
Q 006812 549 MGSYTLAIEFQQRAIDAWESHGP 571 (630)
Q Consensus 549 ~g~~~~A~~~~~~al~~~~~~~~ 571 (630)
.|++++|+.+|++++++.+..+.
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999877654
No 197
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=5.3e-06 Score=82.86 Aligned_cols=103 Identities=8% Similarity=-0.017 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMH 207 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 207 (630)
+.+.|...|++++..++. |+++.+...|++++... |+ .
T Consensus 10 ~i~~aR~vyer~l~~~P~-------------------------~~~e~~~~iferal~~~------------ps-----~ 47 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS-------------------------KDYRSLESLFGRCLKKS------------YN-----L 47 (493)
T ss_dssp --CCHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHSTTC------------CC-----H
T ss_pred chHHHHHHHHHHHHHCCC-------------------------CCHHHHHHHHHHHhccC------------CC-----H
Confidence 477888888888877732 67889999999988751 11 1
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHH
Q 006812 208 AVHLELANVKTAMGR-REEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFV----AVLNFKEALPFGLKALE 277 (630)
Q Consensus 208 ~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~ 277 (630)
.+|..........+. .+.....|+.++... |. ++.....+......+. ..|+.+.+...|++++.
T Consensus 48 ~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v----g~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 48 DLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF----EN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHHHHC----CTHHHHHHHHHHS----TT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHc----CC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 233333333333342 344556667666432 21 1222344444444332 35678888999999986
No 198
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=2.3e-06 Score=85.54 Aligned_cols=345 Identities=10% Similarity=-0.072 Sum_probs=195.4
Q ss_pred hcc-ChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHH
Q 006812 169 SFK-RFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRE 247 (630)
Q Consensus 169 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 247 (630)
..| +.+.|...|++++..+ |. |+++.+...|++++.. .|.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~----------------P~---------------~~~e~~~~iferal~~--------~ps 46 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY----------------MS---------------KDYRSLESLFGRCLKK--------SYN 46 (493)
T ss_dssp ------CCHHHHHHHHHHHH----------------HT---------------TCHHHHHHHHHHHSTT--------CCC
T ss_pred HcCcchHHHHHHHHHHHHHC----------------CC---------------CCHHHHHHHHHHHhcc--------CCC
Confidence 446 3788888888888772 11 7899999999999852 221
Q ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHH
Q 006812 248 LGVANRDLAEAFVAVL-NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYS----GLEEHQKALEQNELSQKVLK 322 (630)
Q Consensus 248 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~ 322 (630)
...+..........+ ..+.....|+.++..... ..... ..+......+. .+|+.+.+...|++|+.+
T Consensus 47 -~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~--d~~s~---~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-- 118 (493)
T 2uy1_A 47 -LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN--YWDSY---GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-- 118 (493)
T ss_dssp -HHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT--CTTCH---HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--
T ss_pred -HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--CcccH---HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--
Confidence 234444444444444 245566778888765321 11222 33433344332 346788899999998863
Q ss_pred HcCCChhHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh-------
Q 006812 323 TWGLSSELLRAEIDAANM-------------QIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ------- 382 (630)
Q Consensus 323 ~~~~~~~~~~~~~~la~~-------------~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~------- 382 (630)
+. ......+...... -.....+..|...++.+....+.... ..|......-...
T Consensus 119 --P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~---~~W~~y~~~E~~~~~~~~~~ 192 (493)
T 2uy1_A 119 --PM-GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV---KNAARLIDLEMENGMKLGGR 192 (493)
T ss_dssp --CC-TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH---HHHHHHHHHHHTCTTCCCHH
T ss_pred --hh-hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHhcCCccCcch
Confidence 11 1111111111111 11223444555555555543332111 1333333322211
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------C------
Q 006812 383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQ---------A------ 447 (630)
Q Consensus 383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~------ 447 (630)
+..+.....|++++... |.....|...+..+...|+.++|...|++++.. +.... .
T Consensus 193 ~~~~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~ 263 (493)
T 2uy1_A 193 PHESRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYG 263 (493)
T ss_dssp HHHHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHH
T ss_pred hhHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHH
Confidence 01344567888887755 344678889999999999999999999999976 22100 0
Q ss_pred -----------------CCc-hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-
Q 006812 448 -----------------QHS-EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD- 508 (630)
Q Consensus 448 -----------------~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 508 (630)
... ...+|...+....+.++.+.|...|+++ . . +. ....++...|.+....+
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-----~-~~--~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-----N-EG--VGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-----T-SC--CCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-----C-CC--CChHHHHHHHHHHHHHCC
Confidence 000 0122333444444566788888888877 2 1 11 23345555566666555
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HHHHHHcC--CCchhHHHHHHHH
Q 006812 509 RPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA---IDAWESHG--PSAQDELREARRL 583 (630)
Q Consensus 509 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~~~~~--~~~~~~~~~A~~~ 583 (630)
+.+.|...|+.+++.+ ++.|+ .+...+......|+.+.|..+|+++ ..++...- ....|+.+.+..+
T Consensus 335 d~~~ar~ife~al~~~-----~~~~~---~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-----PDSTL---LKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp CSHHHHHHHHHHHHHC-----TTCHH---HHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6999999999999843 23454 3444567778899999999998886 34444421 1245677778888
Q ss_pred HHHHHHHhc
Q 006812 584 LEQLKIKAS 592 (630)
Q Consensus 584 ~~~~~~~~~ 592 (630)
+++......
T Consensus 407 ~~~~~~~~~ 415 (493)
T 2uy1_A 407 VDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888776554
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.79 E-value=6.3e-08 Score=78.21 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812 425 NEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY 504 (630)
Q Consensus 425 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 504 (630)
+++++|+.+|+++.+. + ++. .. +|.+|...+..++|+.+|+++.+. ....++++||.+|
T Consensus 9 ~d~~~A~~~~~~aa~~-----g--~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-----N--EMF--GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-----C--CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence 4788999999999874 2 222 33 999999999999999999999882 3356889999999
Q ss_pred HH----cCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 006812 505 LE----LDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSS----MGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 505 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 565 (630)
.. .+++++|+.+|+++.+. .+ ..++++||.+|.. .+++++|+.+|+++.+.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99 89999999999999873 23 3689999999999 99999999999999864
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=2.6e-09 Score=83.04 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
...+..+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++.+.... ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 73 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA--EH 73 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST--TS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--cH
Confidence 457899999999999999999999999984 35556789999999999999999999999999842110 00
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006812 532 HADSIEACQNLSKAYSSMGSYTLAIEFQQ 560 (630)
Q Consensus 532 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 560 (630)
......++..+|.++...|++++|+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 01126788999999999988777765543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.4e-08 Score=78.76 Aligned_cols=100 Identities=12% Similarity=-0.028 Sum_probs=80.7
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.+.++..+|.++...|++++|+..|++++.+ .|....+++.+|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA----------------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999998 223356788999999999999999999999996
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006812 236 IKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGL 273 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 273 (630)
+.+.. .+......++..+|.++...|+++.|+..++
T Consensus 67 ~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 67 YTSTA--EHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp SCSST--TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred hCCCc--cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 54221 1112347788999999999999888876554
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.70 E-value=8.3e-08 Score=72.57 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=64.9
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESH 569 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 569 (630)
+|....+++.+|.+|...|++++|+.+|++++++ +|+...++..+|.+|...|++++|+..|++++++.+..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4666778999999999999999999999999985 35555799999999999999999999999999997775
Q ss_pred CCC
Q 006812 570 GPS 572 (630)
Q Consensus 570 ~~~ 572 (630)
++.
T Consensus 75 ~~~ 77 (100)
T 3ma5_A 75 GTQ 77 (100)
T ss_dssp SCH
T ss_pred Cch
Confidence 543
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=1.4e-07 Score=76.18 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=91.9
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 006812 383 EKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLL 462 (630)
Q Consensus 383 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 462 (630)
+++++|+.+|+++.+.. + + .+. +|.+|...+..++|+.+|+++.+. ....+++++|.+|
T Consensus 9 ~d~~~A~~~~~~aa~~g------~-~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~---------g~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN------E-M---FGC--LSLVSNSQINKQKLFQYLSKACEL---------NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHTT------C-T---THH--HHHHTCTTSCHHHHHHHHHHHHHT---------TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC------C-H---hhh--HHHHHHcCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHH
Confidence 57889999999987542 1 1 222 999999999999999999999873 1345889999999
Q ss_pred HH----cCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHH
Q 006812 463 LL----TGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE----LDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 463 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 523 (630)
.. .+++++|+.+|+++.+. ....++++||.+|.. .+++++|+.+|+++.+.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99 89999999999999872 235588999999999 89999999999999884
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.69 E-value=5.8e-08 Score=78.13 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=76.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhhcchHHHHHH
Q 006812 303 GLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKF----------EEAINTLKGVVRQTEKESETRALVF 372 (630)
Q Consensus 303 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~l~~~~~~~~~~~~~~ 372 (630)
+.+.+++|+..+++++++ +|....+++++|.++...+++ ++|+..|++++++.+.. ..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~----~~A~ 83 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----DEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HHHH
T ss_pred HHhHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc----HHHH
Confidence 456789999999999988 888999999999999998875 59999999999976665 4489
Q ss_pred HHHHHHHHhhc-----------cHHHHHHHHHHHHHHH
Q 006812 373 ISMGKALCNQE-----------KFADAKRCLEIACGIL 399 (630)
Q Consensus 373 ~~la~~~~~~~-----------~~~~A~~~~~~a~~~~ 399 (630)
+++|.+|..+| ++++|+.+|++|+++.
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 99999999885 8999999999999885
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.68 E-value=8.8e-08 Score=71.01 Aligned_cols=84 Identities=25% Similarity=0.292 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812 451 EGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530 (630)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 530 (630)
....+..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------- 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence 3567899999999999999999999999984 3455678999999999999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHhcC
Q 006812 531 HHADSIEACQNLSKAYSSMG 550 (630)
Q Consensus 531 ~~~~~~~~~~~la~~~~~~g 550 (630)
+|....++.++|.++...|
T Consensus 73 -~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -CTTCHHHHHHHHHHHHHHC
T ss_pred -CCCCHHHHHHHHHHHHhcC
Confidence 3445578899999987765
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.62 E-value=3.1e-07 Score=71.60 Aligned_cols=85 Identities=13% Similarity=-0.020 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC
Q 006812 266 KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALG 345 (630)
Q Consensus 266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 345 (630)
++|+..|+++++..+ ....++..+|.+|...|++++|+.+|++++.+ .|....++..+|.++...|
T Consensus 2 ~~a~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 2 QAITERLEAMLAQGT--------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp CCHHHHHHHHHTTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcC
Confidence 357777888776432 23467888999999999999999999998887 5667788899999999999
Q ss_pred CHHHHHHHHHHHHHHhhhc
Q 006812 346 KFEEAINTLKGVVRQTEKE 364 (630)
Q Consensus 346 ~~~~A~~~~~~~l~~~~~~ 364 (630)
++++|+..|++++...+..
T Consensus 68 ~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 68 DRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccc
Confidence 9999999999998876554
No 207
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.62 E-value=4e-06 Score=83.74 Aligned_cols=167 Identities=10% Similarity=-0.019 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHH
Q 006812 371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMN---------EFETAISLLKRTLALL 441 (630)
Q Consensus 371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~ 441 (630)
.+..+-..+.+.|++++|.+.|++..+. ...+ ...+|+.+-.++...+ ..++|.++|++...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~---Gv~p----d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-- 98 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN---GVQL----SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-- 98 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH---TCCC----CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCC----CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH--
Confidence 3455567788888899888888876543 1111 1245666666665433 46888888888765
Q ss_pred HhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006812 442 EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAK 521 (630)
Q Consensus 442 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 521 (630)
..-.|+..+|..+...|.+.|++++|..+|++..+. .......+|+.+-..|.+.|+.++|.+.|++..
T Consensus 99 ----~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-------g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 99 ----DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-------GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp ----TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 234467778999999999999999999999987651 222245688999999999999999999999987
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 522 DIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
+.. ..|+. .+|..|..+|.+.|+.++|.+++++..+
T Consensus 168 ~~G------~~Pd~-~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 168 ESE------VVPEE-PELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HTT------CCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC------CCCCH-HHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 621 33444 4889999999999999999999998754
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.61 E-value=4.9e-07 Score=66.85 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 287 SVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 287 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
.+.....+..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++...+.+
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-- 76 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-- 76 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--
Confidence 3455678889999999999999999999999987 56667889999999999999999999999999976544
Q ss_pred HHHHHHHHHHHHHHhhc
Q 006812 367 TRALVFISMGKALCNQE 383 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~ 383 (630)
..++..+|.++...|
T Consensus 77 --~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 --AEAKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHhcC
Confidence 447788888876554
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.58 E-value=4.7e-07 Score=68.33 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=61.0
Q ss_pred hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC 233 (630)
Q Consensus 154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (630)
|..+.+++.+|.+|...|++++|+..|++++.+ .|....+++.+|.+|...|++++|+..|+++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET----------------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345678899999999999999999999999998 2333457889999999999999999999999
Q ss_pred HHHHHHH
Q 006812 234 LEIKELI 240 (630)
Q Consensus 234 l~~~~~~ 240 (630)
+++.+..
T Consensus 68 l~l~~~~ 74 (100)
T 3ma5_A 68 IEVAREE 74 (100)
T ss_dssp HHHHHHH
T ss_pred HhhhhcC
Confidence 9887554
No 210
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.56 E-value=7.1e-06 Score=81.93 Aligned_cols=168 Identities=10% Similarity=-0.017 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHHHHhhc
Q 006812 333 AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQ---------EKFADAKRCLEIACGILDKKE 403 (630)
Q Consensus 333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~ 403 (630)
.+..+-..+.+.|+.++|+.+|+++.+..-..+ ..+|+.+-.++... +..++|...|++... ...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~---~G~ 101 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV---DKV 101 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH---TTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH---hCC
Confidence 345566788899999999999999877432222 33666666666543 346778887776533 111
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 006812 404 TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLK 483 (630)
Q Consensus 404 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 483 (630)
. | ...+|+.+...|.+.|++++|..++++.... .-.|+..+|..+...|.+.|+.++|.++|++..+.
T Consensus 102 ~---P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-- 169 (501)
T 4g26_A 102 V---P-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-- 169 (501)
T ss_dssp C---C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred C---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 1 1 2357889999999999999999999987652 33466778999999999999999999999988761
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 484 ESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
| -.| ...+|..|..+|.+.|+.++|.+++++..+.
T Consensus 170 ---G-~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 170 ---E-VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp ---T-CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---C-CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 1 223 3458899999999999999999999998664
No 211
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.41 E-value=4.5e-05 Score=72.08 Aligned_cols=213 Identities=10% Similarity=0.056 Sum_probs=149.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhcchHHHH
Q 006812 292 HDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIA-LGKFEEAINTLKGVVRQTEKESETRAL 370 (630)
Q Consensus 292 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~ 370 (630)
.+...||.+|...|++++-.+++......+...+. .........+-..+.. -+..+.-++++.++++...........
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISK-AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988887765444333221 1222223333333332 355666777888888776655433222
Q ss_pred --HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC
Q 006812 371 --VFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ 448 (630)
Q Consensus 371 --~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 448 (630)
.-..+|.+|...|+|.+|.+.+.+..+-+.+.. +......++..-..+|...+++.++...+.++..+..... .
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d--d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~ 174 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLD--DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--C 174 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--C
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--C
Confidence 445899999999999999999999888876643 3456788888899999999999999999999999887763 2
Q ss_pred Cch--hHHHHHHHHHHH-HcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhH
Q 006812 449 HSE--GSVSARIGWLLL-LTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQS 512 (630)
Q Consensus 449 ~~~--~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 512 (630)
+|. +.+...-|.++. ..++|.+|..+|-++++-+... ..|....++..++.+-...++..+
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r~e 238 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQSDD 238 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCHHH
Confidence 343 445577788888 8999999999999988655432 334444455556666666666433
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.39 E-value=0.00012 Score=64.86 Aligned_cols=207 Identities=13% Similarity=-0.014 Sum_probs=127.2
Q ss_pred HHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcC--------------CHHHHHHHH
Q 006812 165 SANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMG--------------RREEALEHL 230 (630)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~ 230 (630)
.++....+.+-+.+-+--.+.+.+.+...+ |++.......+..|...+..+.... ++..|...|
T Consensus 33 ~~~~~~~D~elv~~~~P~~Lk~~e~Ll~~~--P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly 110 (301)
T 3u64_A 33 RVFTEEDDLDLVAQSLPLVLKVYEALHLQN--PAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLY 110 (301)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred hhccCCCCHHHHHHhccHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHH
Confidence 556666777666666666666666555444 5555544455555555555554432 345566666
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-------
Q 006812 231 QKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG------- 303 (630)
Q Consensus 231 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------- 303 (630)
.++.+...+.+...+|.... -...++.. -+.+++. + -.+..+..++..|.+...
T Consensus 111 ~ra~~y~~raL~~~~~~~~~--------~~~~~~~~----~~~~~l~---~----~~~~dve~L~W~ai~~ss~a~~~~g 171 (301)
T 3u64_A 111 LRGARYALSSLETAYPGFTR--------EVFSGDEQ----RLHKVLS---R----CTRVDVGTLYWVGTGYVAAFALTPL 171 (301)
T ss_dssp HHHHHHHHHHHHHHSTTHHH--------HHTSSCHH----HHHHHHT---T----CCGGGHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHhCccHHH--------HHHhcchh----hHHHHHH---H----cCccccHHHHHHHHHHHHHHhcCCC
Confidence 66655443332222221111 11122111 1122221 1 233444445555444322
Q ss_pred ----cccHHHHHHHHHHHHHHHHHcCCChh--HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhhcchHHHHHH
Q 006812 304 ----LEEHQKALEQNELSQKVLKTWGLSSE--LLRAEIDAANMQIAL-----GKFEEAINTLKGVVRQTEKESETRALVF 372 (630)
Q Consensus 304 ----~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 372 (630)
.+....|...+++++++ +|. ...++..+|.+|... |+.++|..+|++++++.+.... ..+
T Consensus 172 g~~Al~~l~~A~a~lerAleL------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i---d~~ 242 (301)
T 3u64_A 172 GSALPDTVHAAVMMLERACDL------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP---DHH 242 (301)
T ss_dssp TSCCHHHHHHHHHHHHHHHHH------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS---HHH
T ss_pred ChHHHHhHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc---hHH
Confidence 23467788888888887 555 677999999999995 9999999999999998775422 278
Q ss_pred HHHHHHHHh-hccHHHHHHHHHHHHHHHHh
Q 006812 373 ISMGKALCN-QEKFADAKRCLEIACGILDK 401 (630)
Q Consensus 373 ~~la~~~~~-~~~~~~A~~~~~~a~~~~~~ 401 (630)
+..|..++. .|+++++..++++++..-..
T Consensus 243 v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 243 ITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 888998888 59999999999999886543
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.36 E-value=4.4e-07 Score=68.43 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 456 ARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGY-IYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
...|..+...|++++|+..|+++++. .|.... ++..+|.+|...|++++|+.+|++++.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45677777788888888888887773 344555 7777888888888888888888888774
No 214
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.35 E-value=0.00016 Score=68.38 Aligned_cols=214 Identities=11% Similarity=-0.010 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHcCCCh
Q 006812 250 VANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSG-LEEHQKALEQNELSQKVLKTWGLSS 328 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~ 328 (630)
.+...||.+|...|++++-.+++.......... .....+.....+-..+.. .+..+.-++....+++..+......
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999988887766555432 223445555555555544 3445555666666666655432222
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCC
Q 006812 329 ELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKE--SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETIS 406 (630)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 406 (630)
-....-..+|.+|+..|+|.+|...+.+..+..... ......++..-..+|...+++.++...+.++........ .+
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~-~~ 175 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY-CP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC-CC
Confidence 233355689999999999999999999999876652 345577788889999999999999999999988876542 23
Q ss_pred cHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCCCCch-hHHHHHHHHHHHHcCChhh
Q 006812 407 PEEVADAYSEISMQYE-SMNEFETAISLLKRTLALLEKLPQAQHSE-GSVSARIGWLLLLTGKVPQ 470 (630)
Q Consensus 407 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~ 470 (630)
+...+.....-|.++. ..++|..|..+|-++..-+.... .+. ..+...++.+-...++..+
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~r~e 238 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQSDD 238 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCCHHH
Confidence 3345666677788888 89999999999999876654331 122 2333344444445555433
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.31 E-value=7.2e-06 Score=62.09 Aligned_cols=71 Identities=17% Similarity=0.103 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
+.-++.+|..++..+ +|..|+.+|++|++..+.. . ......+.++..+|.++.++|++++|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~--~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEA-DYYHTELWMEQALRQLDEG--E-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT--C-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-chHHHHHHHHHHHHhhhcc--C-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456789999999999 9999999999999987543 1 123457788899999999999999999999999998
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.27 E-value=2.1e-05 Score=59.44 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc
Q 006812 412 DAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF 491 (630)
Q Consensus 412 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (630)
.-++.+|..+...|+|..|+.+|++|+...............++..+|.++.++|++++|+.++++++.+ .|++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~~- 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEH- 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC-
Confidence 4567899999999999999999999999876543223345678999999999999999999999999983 3343
Q ss_pred cHHHHHHHHH
Q 006812 492 GVGYIYNNLG 501 (630)
Q Consensus 492 ~~~~~~~~l~ 501 (630)
..++.+++
T Consensus 80 --~~~~~n~~ 87 (104)
T 2v5f_A 80 --QRANGNLK 87 (104)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHhhHH
Confidence 44555554
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.24 E-value=0.00013 Score=64.66 Aligned_cols=105 Identities=18% Similarity=0.139 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHHHHHhcCCCCHHH-HHHH
Q 006812 468 VPQAIPYLESAAERLKESFGPKHFG--VGYIYNNLGAAYLEL-----DRPQSAAQVFAFAKDIMDVSLGPHHADS-IEAC 539 (630)
Q Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~ 539 (630)
..+|...+++++++ +|. ...++..+|.+|... |+.++|..+|++|+++. |+. ..++
T Consensus 179 l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--------P~~~id~~ 242 (301)
T 3u64_A 179 VHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--------SAHDPDHH 242 (301)
T ss_dssp HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------CTTCSHHH
T ss_pred HHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------CCCCchHH
Confidence 35677788888874 244 566899999999995 99999999999999964 432 5788
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCCCch----hHHHHHHHHHHHHH
Q 006812 540 QNLSKAYSS-MGSYTLAIEFQQRAIDAWESHGPSAQ----DELREARRLLEQLK 588 (630)
Q Consensus 540 ~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~A~~~~~~~~ 588 (630)
+..|..++. .|++++|..++++++..-....|+.. +.-++|..++.++.
T Consensus 243 v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 243 ITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhH
Confidence 889999988 49999999999999987666544422 44556666665544
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.21 E-value=8.1e-06 Score=61.31 Aligned_cols=87 Identities=11% Similarity=-0.037 Sum_probs=70.5
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 006812 295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLR-AEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFI 373 (630)
Q Consensus 295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 373 (630)
...|..+...|++++|+..++++++. .|.... ++..+|.+|...|++++|+..|++++...+.+... +.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL----QA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH----HH
Confidence 45788999999999999999999887 666677 99999999999999999999999999987765442 21
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGIL 399 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~ 399 (630)
. +.+.++..+|+++....
T Consensus 74 ~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 74 R--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp H--------HHHHHHHHHHCCTTHHH
T ss_pred H--------HHHHHHHHHHHHHhccC
Confidence 1 56677777777665554
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.01 E-value=9.6e-05 Score=58.98 Aligned_cols=127 Identities=11% Similarity=-0.024 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (630)
..++..-...+...|.|+.|+-....++.+.....+.-.|. ..++..+|.+++..|+|..|...|++++...+.+...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555566677889999999999999988876654433333 5677999999999999999999999999987643211
Q ss_pred -----------------CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006812 489 -----------------KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY 546 (630)
Q Consensus 489 -----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 546 (630)
+.+...++.+.++.||...|++++|+..++..-.- ...| .+...||.+|
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k------~Rt~---kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR------QRTP---KINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG------GCCH---HHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch------hcCH---HHHHHHHHHh
Confidence 11233468889999999999999999987754211 0223 5666667665
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.99 E-value=0.00031 Score=56.11 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCC-
Q 006812 371 VFISMGKALCNQEKFADAKRCLEIACGILDKKETI-SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQ- 448 (630)
Q Consensus 371 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 448 (630)
++..-...+...|.|+.|+-....++.+....... .+.....++..+|..++..++|..|...|++++...+.+....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555666777888999988888888877544322 3445678899999999999999999999999999887543221
Q ss_pred -----------------CchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 006812 449 -----------------HSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAY 504 (630)
Q Consensus 449 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 504 (630)
..++.+.+.++.||.+.|++++|+..++..- ....+..+...||.+|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip---------~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP---------SRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC---------GGGCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC---------chhcCHHHHHHHHHHh
Confidence 1224677999999999999999999876432 1223344555666655
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.98 E-value=0.00018 Score=66.72 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=80.7
Q ss_pred HhhHHHhhc---cChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHH
Q 006812 162 VMGSANYSF---KRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAM---G-RREEALEHLQKCL 234 (630)
Q Consensus 162 ~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~al 234 (630)
..|..+... ..+.+|+.+|++|+++ .|..+.++-.++.+|... + ..........+++
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~l----------------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQS----------------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 344444443 3468899999999998 344444555555555421 1 1112222233333
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Q 006812 235 EIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQN 314 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 314 (630)
...... ...|..+.++..++..+...|++++|+..+++++.+.+ + +..+..+|.++...|++++|++.|
T Consensus 265 ~a~~a~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~------s---~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 265 DNIVTL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM------S---WLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp HHHHTC--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC------C---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhc--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC------C---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 321111 33344566777777777777888888888888887621 1 345567788888888888888888
Q ss_pred HHHHHH
Q 006812 315 ELSQKV 320 (630)
Q Consensus 315 ~~a~~~ 320 (630)
++|+.+
T Consensus 334 ~~AlrL 339 (372)
T 3ly7_A 334 LTAFNL 339 (372)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887776
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.96 E-value=0.00022 Score=56.71 Aligned_cols=82 Identities=5% Similarity=-0.055 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 006812 469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD---RPQSAAQVFAFAKDIMDVSLGPHHA-DSIEACQNLSK 544 (630)
Q Consensus 469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~ 544 (630)
..+.+.|.+.++ ..+....+.+++|.++.+.+ +.++++.+++..++. +.| ...+++++||.
T Consensus 15 ~~~~~~y~~e~~--------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 15 LKFEKKFQSEKA--------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAV 79 (152)
T ss_dssp HHHHHHHHHHHH--------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHH
Confidence 344555555544 23356678999999999988 667999999998883 236 56789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 006812 545 AYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 545 ~~~~~g~~~~A~~~~~~al~~ 565 (630)
.|.+.|+|++|.+++++++++
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhc
Confidence 999999999999999999987
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.95 E-value=0.00067 Score=62.98 Aligned_cols=122 Identities=8% Similarity=-0.021 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 006812 346 KFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEK----FADAKRCLEIACGILDKKETISPEEVADAYSEISMQY 421 (630)
Q Consensus 346 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 421 (630)
...+|+.+|+++++..|.... ++..++.+|..... .......+..++...... ...+..+.++..++..+
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~----A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~--~~~~~~a~~~~alal~~ 287 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTY----ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL--PELNNLSIIYQIKAVSA 287 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC--GGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc--ccCCcCHHHHHHHHHHH
Confidence 357899999999997665543 44444444432111 112222233333322111 11234567888888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006812 422 ESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAER 481 (630)
Q Consensus 422 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 481 (630)
...|++++|+..+++++.+ + +....+..+|.++...|++++|++.|++|+.+
T Consensus 288 l~~gd~d~A~~~l~rAl~L-----n---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 288 LVKGKTDESYQAINTGIDL-----E---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHTCHHHHHHHHHHHHHH-----C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHhc-----C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8899999999999999997 2 23457788999999999999999999999994
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.89 E-value=4.9e-05 Score=55.68 Aligned_cols=70 Identities=9% Similarity=-0.043 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 491 FGVGYIYNNLGAAYLELDR---PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 491 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
|..+..+..+|.+++..++ .++|...+++++. .+|+...++..+|..+...|+|++|+.+|+++++...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--------LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--------HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5556788899999987666 7999999999999 4567778999999999999999999999999987543
Q ss_pred H
Q 006812 568 S 568 (630)
Q Consensus 568 ~ 568 (630)
.
T Consensus 75 ~ 75 (93)
T 3bee_A 75 P 75 (93)
T ss_dssp T
T ss_pred C
Confidence 3
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.78 E-value=0.00014 Score=53.23 Aligned_cols=67 Identities=16% Similarity=0.007 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 291 AHDRRLLGVIYSGLEE---HQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 291 ~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
...+..+|.+++..++ .++|..++++++.+ +|....++..+|..++..|+|++|+.+++++++..+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556667888765555 79999999999998 8999999999999999999999999999999987766
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.77 E-value=0.00077 Score=53.54 Aligned_cols=82 Identities=12% Similarity=0.021 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcC---ChhhHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHH
Q 006812 428 ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTG---KVPQAIPYLESAAERLKESFGPKHF-GVGYIYNNLGAA 503 (630)
Q Consensus 428 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~ 503 (630)
..+.+.|.+.+.. .++...+.+++|+++.+.+ +.++++.+++..++. +.| ...+++++||..
T Consensus 15 ~~~~~~y~~e~~~-------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHT-------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHH
Confidence 4455555555441 2245678899999999988 667999999998882 224 567899999999
Q ss_pred HHHcCChhHHHHHHHHHHHH
Q 006812 504 YLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 504 ~~~~g~~~~A~~~~~~al~~ 523 (630)
+++.|+|++|..++++++++
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhc
Confidence 99999999999999999995
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.011 Score=57.81 Aligned_cols=215 Identities=12% Similarity=-0.018 Sum_probs=131.1
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH-hh
Q 006812 304 LEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALC-NQ 382 (630)
Q Consensus 304 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-~~ 382 (630)
.|+++.|++-+....+..+...+......+...+..++...|+++...+++.-............. .......-+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~-~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ-YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcC
Confidence 367888887664433333334444667788888999999999999887766543332222111111 1111111111 11
Q ss_pred ccHHHHHHHHHHHHHHHHh-hcCC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCc--hhHHHHH
Q 006812 383 EKFADAKRCLEIACGILDK-KETI--SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHS--EGSVSAR 457 (630)
Q Consensus 383 ~~~~~A~~~~~~a~~~~~~-~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~ 457 (630)
...+.. .....+..... ..+. -....+.....|+.+|...|++.+|...+.....-. .+.... .+.++..
T Consensus 108 ~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et---~~~~~~~~kve~~l~ 182 (445)
T 4b4t_P 108 KSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET---YGSMEMSEKIQFILE 182 (445)
T ss_dssp CTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CSSSCHHHHHHHHHH
T ss_pred CchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHH
Confidence 111111 11111111111 1111 112356677889999999999999999998865422 222222 2567788
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 006812 458 IGWLLLLTGKVPQAIPYLESAAERLKESFGPKHF-GVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDV 526 (630)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 526 (630)
...+|...+++.+|...+.++....... ..+| .....+...|.++...++|.+|..+|.++......
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 8999999999999999999986544332 2233 34556778899999999999999999999876543
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.031 Score=54.57 Aligned_cols=214 Identities=13% Similarity=-0.016 Sum_probs=133.4
Q ss_pred cCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 006812 263 LNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI 342 (630)
Q Consensus 263 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 342 (630)
|++++|++-+....+..+ .+.+......++..+..++...|+++...+++.. +.+..|..............-|.
T Consensus 30 ~~~~~a~e~ll~lEK~~r--~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~---Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTR--QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTL---LSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHS--SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHH---HHTTTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh--hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHH
Confidence 567778776543333332 2334445566777888889999999887665532 22333333333333332222222
Q ss_pred H-cCCHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006812 343 A-LGKFEEAINTLKGVVRQTEK-------ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAY 414 (630)
Q Consensus 343 ~-~g~~~~A~~~~~~~l~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (630)
. ....+. ......+..... .....+.....|+.+|...|++.+|...+.....-.. ...+.......+
T Consensus 105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~--~~~~~~~kve~~ 180 (445)
T 4b4t_P 105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY--GSMEMSEKIQFI 180 (445)
T ss_dssp HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--SSSCHHHHHHHH
T ss_pred hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--hcccHHHHHHHH
Confidence 1 222221 111222222111 0123466778899999999999999999887643221 122334567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812 415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKES 485 (630)
Q Consensus 415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (630)
.....+|...+++.+|...+.++.................+...|.++...++|.+|-.+|..++......
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 88999999999999999999998654444432222225566888999999999999999999998865443
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.03 E-value=0.013 Score=45.69 Aligned_cols=120 Identities=16% Similarity=0.075 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHcCCh------hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 006812 452 GSVSARIGWLLLLTGKV------PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 525 (630)
...|........+.|+. ++-++.|++|+..............+..+...+.. ...++.++|.+.|+.++.+.
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h- 90 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC- 90 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh-
Confidence 35677777777777888 77778888887753222112344456666677755 56799999999999999962
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 006812 526 VSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLL 584 (630)
Q Consensus 526 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~ 584 (630)
...+.++...|..-.++|+...|.+.+.+|+. .++.....++.|++-+
T Consensus 91 -------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG----~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 91 -------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE----RGAVPLEMLEIALRNL 138 (161)
T ss_dssp -------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCBCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCCCcHHHHHHHHHhh
Confidence 12278899999999999999999999999997 4454444455555444
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.93 E-value=0.023 Score=44.38 Aligned_cols=110 Identities=11% Similarity=0.021 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 006812 250 VANRDLAEAFVAVLNF------KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKT 323 (630)
Q Consensus 250 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 323 (630)
+.+..........|+. ++-++.|++|+...+..........+..+...+.. ...++.++|.+.|+.++.+
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--- 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--- 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence 3444445555555887 78888899888766543222344566666666654 5668999999999999886
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 324 WGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 324 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
+.. .+.++...|..-.++|+...|...+.+++...++...
T Consensus 90 -hKk--FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 90 -CKK--FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp -CTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred -hHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 222 2888888899999999999999999999997766543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.72 E-value=0.013 Score=44.58 Aligned_cols=67 Identities=4% Similarity=-0.027 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006812 492 GVGYIYNNLGAAYLELDRPQS---AAQVFAFAKDIMDVSLGPHHA-DSIEACQNLSKAYSSMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 492 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 565 (630)
....+.+++|+++.+..+... ++.+++..+ ....| ...+.++.||..+.+.|+|++|..+++..+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 455688899999999887665 555555444 33446 56689999999999999999999999999986
No 232
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.56 E-value=0.026 Score=59.53 Aligned_cols=105 Identities=11% Similarity=-0.045 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCc
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISP 407 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 407 (630)
.....+++.+-..|++.|+.++|..++.+..+...........+|+.|...|++.|++++|.+.|++..+. ...
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G~~--- 197 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA---GLT--- 197 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCC---
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC---
Confidence 44556777788888888888888888877665433222223677778888888888888888877765322 111
Q ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 006812 408 EEVADAYSEISMQYESMNE-FETAISLLKRTLA 439 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 439 (630)
| ...+|+.+-..+.+.|+ .++|.++++++.+
T Consensus 198 P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 198 P-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp C-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 1 22566667677777776 4677777777665
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.036 Score=53.94 Aligned_cols=105 Identities=5% Similarity=-0.033 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCC
Q 006812 452 GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPH 531 (630)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 531 (630)
..++..+|..|...|++++|.+.|.++.... . ........+..+..++...+++..+..++.++..+.... .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~--~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~---~ 202 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---I--STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG---G 202 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---T--CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---C--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC---C
Confidence 3467899999999999999999999977633 2 234567788899999999999999999999998876542 2
Q ss_pred CHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 532 HADS-IEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 532 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
+++. ......-|.++...++|.+|..+|-.+..
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 3333 34455567778889999999999987754
No 234
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.03 Score=54.46 Aligned_cols=111 Identities=14% Similarity=-0.029 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812 248 LGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS 327 (630)
Q Consensus 248 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 327 (630)
...++..+|..|...|++++|.+.|.++...... .......+..+..++...+++..+..++.++..+....++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~ 204 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW 204 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH
Confidence 3557888999999999999999999998876542 23456677788889999999999999999998887766655
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q 006812 328 SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEK 363 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 363 (630)
..........|.++...++|.+|...|..+......
T Consensus 205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 545556666788888999999999999888765543
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.43 E-value=0.013 Score=44.59 Aligned_cols=82 Identities=13% Similarity=-0.021 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhh---HHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHH
Q 006812 428 ETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQ---AIPYLESAAERLKESFGPKHF-GVGYIYNNLGAA 503 (630)
Q Consensus 428 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~ 503 (630)
..+...|.+.+.. + .+...+.+++|+++.+..+... ++.+++..+. .+.| ..-.+++.||..
T Consensus 18 ~~~~~~y~~e~~~-----~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 18 LKFEKKFQSEKAA-----G--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHH-----S--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-----C--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHH
Confidence 3445555555442 2 2445688999999999877655 6666655544 3435 677899999999
Q ss_pred HHHcCChhHHHHHHHHHHHH
Q 006812 504 YLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 504 ~~~~g~~~~A~~~~~~al~~ 523 (630)
+++.|+|++|..+++..+++
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999995
No 236
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.31 E-value=0.033 Score=58.82 Aligned_cols=105 Identities=9% Similarity=-0.101 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCC
Q 006812 409 EVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGP 488 (630)
Q Consensus 409 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (630)
..-.+|+.+-..|++.|+.++|..++.+...+.... ..|++.+|+.|...|.+.|+.++|.++|++..+ .|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-----~G- 195 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-----AG- 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----TT-
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cC-
Confidence 455688999999999999999999998876543222 245677999999999999999999999998876 12
Q ss_pred CCccHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHH
Q 006812 489 KHFGVGYIYNNLGAAYLELDRP-QSAAQVFAFAKDI 523 (630)
Q Consensus 489 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~ 523 (630)
-.| ...+|+.+-.++.+.|+. ++|.++|+++.+.
T Consensus 196 ~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 234 455888899999999985 7888999988763
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.70 E-value=0.18 Score=54.21 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=51.2
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 006812 295 RLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFIS 374 (630)
Q Consensus 295 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 374 (630)
..+...+...|.+++|+...+ ++. ....+....|++++|.+..+.. +. ...|..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~-----------~~~------~~f~~~l~~~~~~~A~~~~~~~------~~---~~~W~~ 686 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP-----------DQD------QKFELALKVGQLTLARDLLTDE------SA---EMKWRA 686 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-----------CHH------HHHHHHHHHTCHHHHHHHHTTC------CC---HHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC-----------Ccc------hheehhhhcCCHHHHHHHHHhh------Cc---HhHHHH
Confidence 345566677788887776442 111 1123456789999888876432 11 348889
Q ss_pred HHHHHHhhccHHHHHHHHHHH
Q 006812 375 MGKALCNQEKFADAKRCLEIA 395 (630)
Q Consensus 375 la~~~~~~~~~~~A~~~~~~a 395 (630)
+|..+...++++.|+.+|.++
T Consensus 687 la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 687 LGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHc
Confidence 999999999999999999875
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.63 E-value=0.29 Score=52.55 Aligned_cols=164 Identities=14% Similarity=0.051 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 006812 335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAY 414 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (630)
..++..+...|.+++|+...+.. .. - .......|++++|.+..+.. .....|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~----~---f~~~l~~~~~~~A~~~~~~~-------------~~~~~W 684 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQ----K---FELALKVGQLTLARDLLTDE-------------SAEMKW 684 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HH----H---HHHHHHHTCHHHHHHHHTTC-------------CCHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------ch----h---eehhhhcCCHHHHHHHHHhh-------------CcHhHH
Confidence 44556667788888877655321 11 0 12345678888887764321 223678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHH
Q 006812 415 SEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG 494 (630)
Q Consensus 415 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 494 (630)
..+|..+...|+++.|+.+|.++-+. ..+..++...|+.+....+.+.+.. ....
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~---------------~~l~~l~~~~~~~~~~~~~~~~a~~-------~~~~--- 739 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDL---------------ESLFLLHSSFNNKEGLVTLAKDAET-------TGKF--- 739 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCH---------------HHHHHHHHHTTCHHHHHHHHHHHHH-------TTCH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccCh---------------hhhHHHHHHcCCHHHHHHHHHHHHH-------cCch---
Confidence 89999999999999999999876321 2233344445555443333322222 0111
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 006812 495 YIYNNLGAAYLELDRPQSAAQVFAF------AKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLA 555 (630)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 555 (630)
..-..+|...|++++|+++|.+ |+.+.+.. ++.......+....+.-+...|+.+.|
T Consensus 740 ---~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~-~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 740 ---NLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTY-GLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp ---HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhccchhHH
Confidence 1112245556666666666543 33333331 221111445556666666777765433
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.58 E-value=0.18 Score=38.58 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=53.4
Q ss_pred CchhHHHHHHHHHHHHcCCh---hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 449 HSEGSVSARIGWLLLLTGKV---PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
++...+.+++|+++.+..+. .+++.+++..+. .......++++.||..+.+.|+|++|..+.+..+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34556889999999987664 457777776665 122356789999999999999999999999999883
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.43 Score=38.96 Aligned_cols=24 Identities=21% Similarity=0.008 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 209 VHLELANVKTAMGRREEALEHLQK 232 (630)
Q Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~ 232 (630)
.|..||......|+++-|+.+|.+
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Confidence 344555555555555555555554
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.16 E-value=0.41 Score=37.18 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=53.9
Q ss_pred CchhHHHHHHHHHHHHcCChh---hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 449 HSEGSVSARIGWLLLLTGKVP---QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
.+...+.+++|+++.+..+.. +++.+++..+. ......-++++.||..++++|+|++|..+.+..+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455678899999999977654 57777776665 122256778999999999999999999999999984
No 242
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.42 E-value=0.16 Score=49.34 Aligned_cols=144 Identities=13% Similarity=0.034 Sum_probs=61.5
Q ss_pred HhhccChHHHHHHHHHHH--HHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHHH
Q 006812 167 NYSFKRFSDSLGYLSKAN--RMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKC-------LEIK 237 (630)
Q Consensus 167 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------l~~~ 237 (630)
++..+++++|..+-...+ ......... ......+.+|+..+.++...|+........... +...
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrr-------tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~ 218 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLR-------SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL 218 (523)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHTHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHH-------hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH
Confidence 456788888888877655 222222111 123345677887888888888776543222221 1222
Q ss_pred HH-HhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 006812 238 EL-ILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNEL 316 (630)
Q Consensus 238 ~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 316 (630)
+. .+..+....+..++.+-..|...+.|++|..+..++. ++.. ...+...+..++.+|.++..+++|.+|.+++..
T Consensus 219 rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 219 KIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 22 1223445667888999999999999999999998874 2211 012345677788899999999999999999998
Q ss_pred HHHH
Q 006812 317 SQKV 320 (630)
Q Consensus 317 a~~~ 320 (630)
|+..
T Consensus 296 A~rk 299 (523)
T 4b4t_S 296 AIRK 299 (523)
T ss_dssp HTSS
T ss_pred HHHh
Confidence 7764
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.36 E-value=6.4 Score=41.82 Aligned_cols=174 Identities=13% Similarity=0.054 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 366 ETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETI--SPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 366 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
....-+++.+|.++...++ ++..++...+.-.....+. .......+...||.++...++ +++.+.+...+.
T Consensus 410 ~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~---- 482 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY---- 482 (963)
T ss_dssp HHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh----
Confidence 3456678888888777664 5666666654432100000 011223455678888877766 455666655554
Q ss_pred CCCCCCch-hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 444 LPQAQHSE-GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 444 ~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
...... ..+-..+|.++.-.|+-+-...++..+.+ ..+. ...-...+|......|+.+.+....+....
T Consensus 483 --dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e-~vrR~aalgLGll~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 483 --NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHG-NITRGLAVGLALINYGRQELADDLITKMLA 552 (963)
T ss_dssp --TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCH-HHHHHHHHHHHHHTTTCGGGGHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcH-HHHHHHHHHHHhhhCCChHHHHHHHHHHHh
Confidence 111111 23446788888888886655555555443 1222 222334555556677887777666655443
Q ss_pred HHHHhcCCCCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006812 523 IMDVSLGPHHADSI-EACQNLSKAYSSMGSYTLAIEFQQRAI 563 (630)
Q Consensus 523 ~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 563 (630)
. .+|... .+...+|..|...|+...-..++..+.
T Consensus 553 ~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 553 S-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp C-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred C-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 1 344433 345667888888888654444555443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.45 Score=49.22 Aligned_cols=123 Identities=16% Similarity=0.114 Sum_probs=80.4
Q ss_pred cCC-HHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH--c-CChhhHHHHHHHHHHHHHHhc---CCC-------
Q 006812 424 MNE-FETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL--T-GKVPQAIPYLESAAERLKESF---GPK------- 489 (630)
Q Consensus 424 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~-g~~~~A~~~~~~al~~~~~~~---~~~------- 489 (630)
.++ ++.|+.++++.... .|...++...+.+... . .+--+|+..+.++++-..... .+.
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 444 57788888876553 2333343333333221 2 233457777777765322111 111
Q ss_pred CccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006812 490 HFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRA 562 (630)
Q Consensus 490 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 562 (630)
.+.....+...+..+...|+++-|+.+.++|+.. .|....+|+.|+.+|..+|+++.|+-.+..+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1223345667788888999999999999999984 4666689999999999999999999777665
No 245
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.58 Score=45.60 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=60.8
Q ss_pred HhccccHHHHHHHHHHHH--HHHHHcC---CChhHHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHHHh--hh
Q 006812 301 YSGLEEHQKALEQNELSQ--KVLKTWG---LSSELLRAEIDAANMQIALGKFEEAIN----------TLKGVVRQT--EK 363 (630)
Q Consensus 301 ~~~~g~~~~A~~~~~~a~--~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~----------~~~~~l~~~--~~ 363 (630)
....+++++|..+-.... ..+.... .+.-.+.+|+..+.++...|+...... .+..+++.. ..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 345677777777666544 2222221 123345566666777777776655322 222222222 22
Q ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 364 ESETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 364 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
+....+..++.+-+.|...+.++.|..+..++. +.... ......+..++.+|.++..+++|.+|.+++..|+..
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445567788899999999999999999988763 11111 122456778889999999999999999999998864
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.88 E-value=1.7 Score=33.34 Aligned_cols=65 Identities=6% Similarity=0.004 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 369 ALVFISMGKALCNQEKF---ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 369 ~~~~~~la~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
..+.+++|+++.+..+. .+++..++..+.. ++...-..++.+|..+.+.|+|++|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 55778888888876554 4566666654432 12356688899999999999999999999998885
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.72 E-value=1.4 Score=35.96 Aligned_cols=45 Identities=4% Similarity=-0.068 Sum_probs=28.6
Q ss_pred HhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006812 380 CNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRT 437 (630)
Q Consensus 380 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 437 (630)
...|+++.|.+..+.. +....|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4556666666654431 12256777777777777777777777664
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.59 E-value=0.64 Score=44.38 Aligned_cols=102 Identities=14% Similarity=0.018 Sum_probs=73.8
Q ss_pred HHcCChhhHHHHHHHHHHHHHHhcCCCC--------------ccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q 006812 463 LLTGKVPQAIPYLESAAERLKESFGPKH--------------FGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSL 528 (630)
Q Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 528 (630)
...|+.+.|...+.+|+.++.--+-++. .....+...++..+...|++.+|+..+..++.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~------ 199 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF------ 199 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 3457777777777777775422111110 01123455678888999999999999999877
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCCC
Q 006812 529 GPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWES-HGPS 572 (630)
Q Consensus 529 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~ 572 (630)
.+|..-..+..+..++...|+..+|+..|+++.+.+.. +|.+
T Consensus 200 --~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 200 --EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp --HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555578999999999999999999999999887665 5644
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.51 E-value=1.6 Score=45.16 Aligned_cols=122 Identities=6% Similarity=-0.029 Sum_probs=77.3
Q ss_pred hcC-HHHHHHHHHHHHHHHhhhcCCCCHHHHHHH--HHHHHHHhccccHHHHHHHHHHHHHHHH----HcCCC-------
Q 006812 262 VLN-FKEALPFGLKALEIHKKGLGHNSVEVAHDR--RLLGVIYSGLEEHQKALEQNELSQKVLK----TWGLS------- 327 (630)
Q Consensus 262 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~------- 327 (630)
.|+ ++.|+.++++.....+ .....+ ..++.+.....+--+|+..+.++++-.. .....
T Consensus 261 t~~~~~~a~~~le~L~~~~p--------~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDP--------IHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCG--------GGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 444 5778888887655322 111111 1122222222345567777776664321 11111
Q ss_pred -hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 006812 328 -SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIA 395 (630)
Q Consensus 328 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 395 (630)
+.....+...+..+...|+++-|+.+.++++...+.. ..+|..|+.+|..+|+|+.|+-.++..
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse----F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDS----FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh----hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1122345556888889999999999999999976665 459999999999999999999777654
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.45 E-value=4.4 Score=36.81 Aligned_cols=121 Identities=11% Similarity=-0.086 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHH
Q 006812 210 HLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVE 289 (630)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 289 (630)
+..+..-|.++++|++|++.+. .-+..+.+.|++..|-++..-.++...+...+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~----------------------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-- 91 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELIS----------------------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-- 91 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred HHHHHHHHHHhcCHHHHHHHHH----------------------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC--
Confidence 3444555555566666655544 3345555566666666666555655554321111
Q ss_pred HHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006812 290 VAHDRRLLGVIYSGLEEHQ-KALEQNELSQKVLKTWGL-SSELLRAEIDAANMQIALGKFEEAINTLK 355 (630)
Q Consensus 290 ~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (630)
......+..++.....-+ .=..+.+++++.....+. .......+..+|..|...|++.+|..+|-
T Consensus 92 -~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 92 -DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp -HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 223334455554432111 224667777787777765 35667788889999999999988888774
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.21 E-value=1.8 Score=33.63 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 006812 328 SELLRAEIDAANMQIALGKF---EEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGIL 399 (630)
Q Consensus 328 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 399 (630)
.....+.+++|+++....+. .+++.+++..+.. .+...-..++.+|..+.+.|+|++|.++.+..+++-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44577888889888887765 4677788877763 333445689999999999999999999999987764
No 252
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.05 E-value=2.1 Score=34.15 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--HH--------hhcC
Q 006812 335 IDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKALCNQEKFADAKRCLEIACGI--LD--------KKET 404 (630)
Q Consensus 335 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~--------~~~~ 404 (630)
..++.+++-.|.|..++-++.. .+. +.+.+.-+.+|...+++..|+..++..+.- .+ +..-
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-------lNT--~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-------LNT--CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-------CCB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred hhhhhhhhhcchHhHHHHHHHh-------cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 3456667778888877766543 221 335555667888889999999888887621 11 1112
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 405 ISPEEVADAYSEISMQYESMNEFETAISLLKRTLAL 440 (630)
Q Consensus 405 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 440 (630)
.++.+.--.+..+|.++...|+.++|+.++..+...
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 233344567788999999999999999999987764
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.76 E-value=1.7 Score=41.37 Aligned_cols=102 Identities=20% Similarity=0.129 Sum_probs=74.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCCCC---c--h----------hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Q 006812 421 YESMNEFETAISLLKRTLALLEKLPQAQH---S--E----------GSVSARIGWLLLLTGKVPQAIPYLESAAERLKES 485 (630)
Q Consensus 421 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~--~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (630)
....|+.+.|...+.+|+.++.-..-... + . ..+...++..+...|++.+|+..+..++.
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~----- 199 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF----- 199 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 34467788888888888877532211100 0 0 11234567778899999999999999887
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q 006812 486 FGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP 530 (630)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 530 (630)
.+|..-..+..+..++...|+..+|+..|+++.....+.+|-
T Consensus 200 ---~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~ 241 (388)
T 2ff4_A 200 ---EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 241 (388)
T ss_dssp ---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346556688899999999999999999999999987766663
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.46 E-value=6.1 Score=35.87 Aligned_cols=167 Identities=12% Similarity=0.138 Sum_probs=92.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH
Q 006812 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV 454 (630)
Q Consensus 375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 454 (630)
+..-|.+++++++|++.+... +..+.+.|++..|.++..-.++.+.+... ..+...
T Consensus 39 l~~Ry~~~~~~~eAidlL~~g----------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~--~~~~~~ 94 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQG----------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEV--KVDDIS 94 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CCSHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCC--CCCHHH
Confidence 344456667777777665443 33344556666666655555555555422 112234
Q ss_pred HHHHHHHHHHcCChh-hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHH--------HHH--
Q 006812 455 SARIGWLLLLTGKVP-QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFA--------KDI-- 523 (630)
Q Consensus 455 ~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--------l~~-- 523 (630)
...+..++.....-+ .=..+.++++....+. +.........+..+|..|...|++.+|..+|-.. .++
T Consensus 95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 95 VARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 455555555433222 2356667777755543 3323344567889999999999999999887421 111
Q ss_pred -HHHhcCCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHH
Q 006812 524 -MDVSLGPHHADSIEACQNLS-KAYSSMGSYTLAIEFQQRAIDAW 566 (630)
Q Consensus 524 -~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~ 566 (630)
+........|.....+...+ ..|...|+...|...+....+..
T Consensus 174 ~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 174 DWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 11111013344444443333 34567777777777777666554
No 255
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=92.11 E-value=5.6 Score=34.68 Aligned_cols=56 Identities=18% Similarity=0.078 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLALL 441 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 441 (630)
.+.|...|+.|..+. ....+.+|.......+.+..|.. .++.++|....+++++-.
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 356888999999999 77777777666666666666655 799999998888877643
No 256
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.74 E-value=19 Score=38.26 Aligned_cols=177 Identities=15% Similarity=0.073 Sum_probs=93.5
Q ss_pred hHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
..+-+++.+|.++...++ ++..++...+.-.....+ ..+.......+...||.++.-.++ +++.+.+...+
T Consensus 411 ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~------~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L 481 (963)
T 4ady_A 411 IKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSG------DEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVL 481 (963)
T ss_dssp HHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCS------CHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCcccccc------ccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 456678888888877664 677666665543110000 000112233455578888776665 34555555544
Q ss_pred HHHHHHhccchHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHH
Q 006812 235 EIKELILEEDSREL-GVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQ 313 (630)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 313 (630)
. .++... ..+-..+|.++.-.|+-+....++..+.+ ..+..+.. ...+|......|+.+.+-..
T Consensus 482 ~-------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~vrR-~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 482 Y-------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGNITR-GLAVGLALINYGRQELADDL 546 (963)
T ss_dssp H-------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHHHHH-HHHHHHHHHTTTCGGGGHHH
T ss_pred h-------cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHHHHH-HHHHHHHhhhCCChHHHHHH
Confidence 2 222221 24556788888888887666555554442 12332222 22334444455665554443
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 314 NELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVR 359 (630)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (630)
.+ .+....+......+...+|..|...|+...-..++..+..
T Consensus 547 i~----~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 547 IT----KMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HH----HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HH----HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 33 2222222222333455678888899996555556666654
No 257
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=90.67 E-value=8.1 Score=33.75 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChhHHHHHHHHHHH
Q 006812 469 PQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE-LDRPQSAAQVFAFAKD 522 (630)
Q Consensus 469 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 522 (630)
+.|...|+.|.++....+.+.||-......+.+..|+. +++.++|....++|.+
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 57889999999999888899999877777777777766 7999999998888776
No 258
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=90.26 E-value=4.8 Score=36.46 Aligned_cols=75 Identities=20% Similarity=0.044 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCc
Q 006812 496 IYNNLGAAYLEL--DRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSA 573 (630)
Q Consensus 496 ~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 573 (630)
++.+||.+-... .....++..|.+|+...+..++..|. --|..+|-.+.+.+++.+|+..+.+|-.+...+....
T Consensus 257 ALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~r 333 (472)
T 3re2_A 257 AIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSK 333 (472)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCG
T ss_pred hhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 445555554432 22234899999999999998887665 4677789999999999999999999999998866543
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.17 E-value=11 Score=34.49 Aligned_cols=241 Identities=10% Similarity=0.025 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcCCCCH
Q 006812 209 VHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKGLGHNSV 288 (630)
Q Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 288 (630)
.+..++.-|.++++|++|++++... +..+.+.|++..|.++..-.++.+.+..-+-..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G----------------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~ 94 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV----------------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG 94 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence 3444555566666666666654433 444445555555555555445444433211111
Q ss_pred HHHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcch
Q 006812 289 EVAHDRRLLGVIYSGLEEHQ-KALEQNELSQKVLKTWGLS-SELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESE 366 (630)
Q Consensus 289 ~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 366 (630)
.....+..++.....-+ .=..+..++++.....+.. ......+..+|..|+..+++.+|..+|-- ..++.
T Consensus 95 ---~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-----g~~~s 166 (336)
T 3lpz_A 95 ---ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-----GTKES 166 (336)
T ss_dssp ---HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-----SCTTH
T ss_pred ---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-----cCCch
Confidence 22333444444333211 1244666777776665543 55667777888999988888888877731 11110
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHh-C
Q 006812 367 TRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYS-EISMQYESMNEFETAISLLKRTLALLEK-L 444 (630)
Q Consensus 367 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~-~ 444 (630)
+..+..+-. +...... +.....+. .....|...++...|...+....+...+ .
T Consensus 167 --~~~~a~mL~-------------------ew~~~~~----~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~ 221 (336)
T 3lpz_A 167 --PEVLARMEY-------------------EWYKQDE----SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDN 221 (336)
T ss_dssp --HHHHHHHHH-------------------HHHHTSC----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHH-------------------HHHHhcC----CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcC
Confidence 111211111 1111110 11222222 2233467788999998887776665422 1
Q ss_pred CC-------CC------CchhHH--HHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 006812 445 PQ-------AQ------HSEGSV--SARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELD 508 (630)
Q Consensus 445 ~~-------~~------~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 508 (630)
.. .. .|.... +..+..+-+..+. ...|....+.+...+..+.+.....+..+|..|+...
T Consensus 222 p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 222 KGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp TTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred CCccccccccCCcccccCCCCchHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 11 00 111111 2233333444454 3556655555555444442266777888888888664
No 260
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=89.91 E-value=9.2 Score=33.25 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLAL 440 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 440 (630)
.+.|...|+.|..+.....++.+|.......+.+..|.. .++.++|....++|++-
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356788999999998877777777766666667766655 79999998887777654
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.77 E-value=12 Score=34.28 Aligned_cols=169 Identities=12% Similarity=0.029 Sum_probs=88.1
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhH
Q 006812 374 SMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGS 453 (630)
Q Consensus 374 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 453 (630)
.++.-|.+.++|++|++.+...... +.+.|+...|.++..-.++.+.+..-+ ++..
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~~----------------------ll~~~Q~~sg~DL~~llvevy~~~~~~--~~~~ 95 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQT----------------------LLRSGQGGSGGDLAVLLVDTFRQAGQR--VDGA 95 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----------------------HHHTTCHHHHHHHHHHHHHHHHHHTCC--CCHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCCC--CCHH
Confidence 3444467778888887765544333 333344444444443333333332111 1112
Q ss_pred HHHHHHHHHHHcCChh-hHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHH--------HHHHHH
Q 006812 454 VSARIGWLLLLTGKVP-QAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFA--------FAKDIM 524 (630)
Q Consensus 454 ~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~ 524 (630)
....+..++.....-+ .=..+.++++....+ .|............+|..|.+.+++.+|..+|- ...++.
T Consensus 96 ~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL 174 (336)
T 3lpz_A 96 SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARME 174 (336)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHH
Confidence 3344444444333211 123455666665544 333333444577889999999999999987762 111211
Q ss_pred HHhcCCCCHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 525 DVSLGPHHADSIEACQNL-SKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 525 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
-+......+.....+... ...|...++...|...+....+...
T Consensus 175 ~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~ 218 (336)
T 3lpz_A 175 YEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALV 218 (336)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 111112223333333333 3457888999999888877776553
No 262
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=89.75 E-value=9 Score=32.90 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLAL 440 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 440 (630)
.+.|...|+.|..+......+.+|.......+.+..|.. .++.++|....+++++-
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356888999999999877777777666666666666555 79999998887777664
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.39 E-value=16 Score=40.69 Aligned_cols=100 Identities=18% Similarity=0.130 Sum_probs=75.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHH-----------------HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 294 RRLLGVIYSGLEEHQKALEQNELSQKVL-----------------KTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG 356 (630)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (630)
.+.+|.++...|++++|..+|+++..-+ ............|..+..++...+.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688999999999999999998763211 11111122345677888899999999999999999
Q ss_pred HHHHhhhcchH-HHHHHHHHHHHHHhhccHHHHHHHHH
Q 006812 357 VVRQTEKESET-RALVFISMGKALCNQEKFADAKRCLE 393 (630)
Q Consensus 357 ~l~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 393 (630)
+++....+.+. ....|.++-..+...|+|++|...+.
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99877655443 34467888888999999999977664
No 264
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=89.32 E-value=7.2 Score=31.17 Aligned_cols=96 Identities=16% Similarity=0.045 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--Hh--------h
Q 006812 212 ELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI--HK--------K 281 (630)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~--------~ 281 (630)
.++..++-.|.|..++-.+.+ ...+.+.+.-+.||....+|..|+..++..++- .+ +
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred hhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 567888889999998877643 112456667788999999999999999998731 11 0
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 006812 282 GLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKV 320 (630)
Q Consensus 282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 320 (630)
..--+..+.-..+..+|.+....|+.++|+.++......
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111122234456778999999999999999999877654
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.09 E-value=1.3 Score=43.50 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=55.3
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCL 234 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 234 (630)
-.++..||.+......++.|..+|.+|..+ .|.....++.||.+....|+.-+|+-+|.+++
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~----------------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL----------------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh----------------CCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 347788999999999999999999999998 45556789999999999999999999999988
No 266
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=88.93 E-value=11 Score=32.65 Aligned_cols=57 Identities=16% Similarity=0.034 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLALL 441 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 441 (630)
.+.|...|+.|..+......+.+|.......+.+..|.. .++.++|....++|++-.
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 356788999999999877777777766666666666554 799999988877776643
No 267
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.48 E-value=17 Score=34.50 Aligned_cols=146 Identities=14% Similarity=0.067 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCC-CCCCccchhhH
Q 006812 128 DPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGL-GGSVEDIKPIM 206 (630)
Q Consensus 128 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~ 206 (630)
..+..+.+|+..+.-+... -+. ...+. .+..+.....+.++|++++++............. +....+.....
T Consensus 54 ~~~~~~~ly~~fi~~f~~k--in~--L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~ 126 (393)
T 4b4t_O 54 STPLRLRLYDNFVSKFYDK--INQ--LSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGI 126 (393)
T ss_dssp SCCCCHHHHHHHHHHHHHH--SCS--HHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSH
T ss_pred cchHHHHHHHHHHHHHHHh--cCH--HHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhH
Confidence 3444567777776666543 121 11121 2334556677899999999877555444332220 11111122234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
..+...++..|...|+.++|..+++++-.......+.+....+..+...+..|...+++..+....-..+....
T Consensus 127 l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 127 LLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 45667889999999999999999999887776654334445567777788888899999887777666665443
No 268
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=88.34 E-value=12 Score=32.62 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 006812 386 ADAKRCLEIACGILDKKETISPEEVADAYSEISMQYES-MNEFETAISLLKRTLA 439 (630)
Q Consensus 386 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 439 (630)
+.|...|+.|..+......+.+|.......+.+..|.. .++.++|..+.+++++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56888999999999877777777766666666666655 7999998887776654
No 269
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=88.07 E-value=7.8 Score=35.89 Aligned_cols=74 Identities=7% Similarity=-0.094 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 496 IYNNLGAAYLELDR--PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 496 ~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
++.+||.+-...-- -..++..|.+++...+..++..|. --|..+|-.+++.+++.+|+..+..|-.+...+...
T Consensus 279 ALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~ 354 (550)
T 3u84_A 279 ALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYC 354 (550)
T ss_dssp HHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred hhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 44455544433211 124889999999999988887665 467778999999999999999999999998886554
No 270
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.94 E-value=1.6 Score=42.86 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 370 LVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNEFETAISLLKRTLA 439 (630)
Q Consensus 370 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 439 (630)
..+..||.+......++.|..+|.+|..+. |.....++.||.+....|+.-+|+-+|-+++.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 367788999999999999999999999987 66778999999999999999999999988875
No 271
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.75 E-value=6 Score=44.00 Aligned_cols=103 Identities=13% Similarity=-0.026 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------HhCCCCCCchhHHHHHHHHHHHHcCChhhHHHHHH
Q 006812 413 AYSEISMQYESMNEFETAISLLKRTLALL----------------EKLPQAQHSEGSVSARIGWLLLLTGKVPQAIPYLE 476 (630)
Q Consensus 413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (630)
..+.+|.++...|++++|..+|+++-.-. .............|..+..++.+.|.++.++++.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34779999999999999999998763211 00001111123456788889999999999999999
Q ss_pred HHHHHHHHhcCCCCcc-HHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006812 477 SAAERLKESFGPKHFG-VGYIYNNLGAAYLELDRPQSAAQVFAF 519 (630)
Q Consensus 477 ~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 519 (630)
.|++. .+++.+. ....+.++-..+...|+|++|...+..
T Consensus 924 lAi~~----~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 924 LADAS----KETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHH----CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHh----ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 99874 2223333 233577788889999999999877643
No 272
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=87.20 E-value=13 Score=31.79 Aligned_cols=56 Identities=23% Similarity=0.083 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 006812 385 FADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE-SMNEFETAISLLKRTLAL 440 (630)
Q Consensus 385 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 440 (630)
.+.|...|+.|..+.....++.||.......+.+..|. -.++.++|....++|++-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999987787777776666666666655 569999998887777653
No 273
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=85.30 E-value=13 Score=34.55 Aligned_cols=57 Identities=5% Similarity=-0.067 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Q 006812 511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHG 570 (630)
Q Consensus 511 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 570 (630)
..++..|++|+...+..++..|. --|..+|-.+.+.+++.+|+..+.++-.+...+.
T Consensus 281 p~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Yn 337 (489)
T 4gq4_A 281 PDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYN 337 (489)
T ss_dssp CCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhhcc
Confidence 35778999999999998887664 4677889999999999999999999988777643
No 274
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.98 E-value=30 Score=32.85 Aligned_cols=109 Identities=11% Similarity=0.025 Sum_probs=75.9
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHhcCC---------CCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q 006812 459 GWLLLLTGKVPQAIPYLESAAERLKESFGP---------KHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLG 529 (630)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 529 (630)
..+.....+.++|.+++++........... .......+...++..|...|+.++|..+++++-.......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345556778899999988765433322111 11234556678899999999999999999999888777654
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 006812 530 PHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAIDAWE 567 (630)
Q Consensus 530 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 567 (630)
.+.......+...+..|...+++..+....-.++....
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 44445556777778888999999876666555554443
No 275
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=82.57 E-value=23 Score=30.60 Aligned_cols=58 Identities=24% Similarity=0.111 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHH
Q 006812 468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE-LDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~ 525 (630)
.+.|...|+.|.++....+.+.||-......+.+..|+. +++.++|....++|.+-..
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai 205 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI 205 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 367889999999999888999999877777777777666 7999999998888876443
No 276
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=80.50 E-value=27 Score=29.97 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHH
Q 006812 468 VPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLE-LDRPQSAAQVFAFAKDIMD 525 (630)
Q Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~ 525 (630)
.+.|...|+.|.++....+.+.||-......+.+..|+. +++.++|....++|.+-..
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai 207 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAM 207 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 367889999999999888999999877777777777664 6999999998888876443
No 277
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=80.08 E-value=30 Score=30.24 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHHh--ccc
Q 006812 177 LGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGR----------REEALEHLQKCLEIKELIL--EED 244 (630)
Q Consensus 177 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~ 244 (630)
...+...+.+.+...-+. ..+ . .....+-..|..|..... .+.|...|++|.++....+ .+.
T Consensus 118 ~~iC~diL~llD~~Lip~----a~~-~-skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pT 191 (268)
T 3efz_A 118 LLESEDVIRIIDDNLLMY----SEE-G-ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPS 191 (268)
T ss_dssp HHHHHHHHHHHHHHTGGG----CCH-H-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHHHHhhccc----CCc-h-hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344555666655543221 111 1 333444455777765432 3678899999999998878 888
Q ss_pred hHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 006812 245 SRELGVANRDLAEAFV-AVLNFKEALPFGLKALEI 278 (630)
Q Consensus 245 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 278 (630)
+|...-...+.+..|+ -.++.++|..+.++|.+-
T Consensus 192 hPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 192 DPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8866665666666665 579999999999998875
No 278
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.57 E-value=18 Score=26.80 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHHHHHHHH-c-----CC-CchhHHHHHHHHHHHHHHH
Q 006812 549 MGSYTLAIEFQQRAIDAWES-H-----GP-SAQDELREARRLLEQLKIK 590 (630)
Q Consensus 549 ~g~~~~A~~~~~~al~~~~~-~-----~~-~~~~~~~~A~~~~~~~~~~ 590 (630)
.|+.+.|+++|++.+.-+.. + ++ ..-..+++|.++-++|.+.
T Consensus 35 ~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~n 83 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKET 83 (116)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 49999999999999987776 2 22 3456788999988887655
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=77.14 E-value=33 Score=29.10 Aligned_cols=84 Identities=13% Similarity=0.022 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHH
Q 006812 132 TLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHL 211 (630)
Q Consensus 132 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (630)
-..+++++++.+.... .-..++.....+...+.. .+++..+|.-.... .+....+..|.
T Consensus 96 L~~lLErc~~~F~~~~-rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~--------------~IG~~~AlfYe 154 (223)
T 4aez_C 96 LVTLLERCTREFVRNP-LYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHH--------------HIGQESSIFYE 154 (223)
T ss_dssp HHHHHHHHHHHTTTCG-GGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHT--------------TCSTTBHHHHH
T ss_pred HHHHHHHHHHHhcccc-cccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHC--------------CcchhHHHHHH
Confidence 4567777776664431 112245566666555542 24666666555443 22334567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 212 ELANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
..|..+...|++.+|...|+.+++.
T Consensus 155 ~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 155 EYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8999999999999999999998853
No 280
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=77.09 E-value=44 Score=30.51 Aligned_cols=76 Identities=14% Similarity=0.062 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812 250 VANRDLAEAFVAVL--NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS 327 (630)
Q Consensus 250 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 327 (630)
.++.+||.+-...- ....++.+|.+++...+..+++.|. .-|..+|..+++.+++.+|+.....|-..++..+-.
T Consensus 256 mALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~ 332 (472)
T 3re2_A 256 MAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYS 332 (472)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred hhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 44555555543322 2233888899999888887766553 345667889999999999999988888877766555
Q ss_pred h
Q 006812 328 S 328 (630)
Q Consensus 328 ~ 328 (630)
.
T Consensus 333 r 333 (472)
T 3re2_A 333 K 333 (472)
T ss_dssp G
T ss_pred c
Confidence 3
No 281
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=76.31 E-value=11 Score=26.26 Aligned_cols=38 Identities=18% Similarity=0.029 Sum_probs=30.3
Q ss_pred chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 006812 202 IKPIMHAVHLELANVKTAMGRREEALEHLQKCLEIKEL 239 (630)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 239 (630)
..-..+-.+-..+..+...|+|++|+++.+++......
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34455667778999999999999999999998765543
No 282
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.62 E-value=44 Score=29.34 Aligned_cols=55 Identities=13% Similarity=0.008 Sum_probs=47.8
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 006812 461 LLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKDI 523 (630)
Q Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 523 (630)
-..+.|+.++|++.....++ .+|..+.....+..+++-.|+++.|...++-+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 35678999999999998887 67888888889999999999999999999888775
No 283
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=73.13 E-value=43 Score=28.48 Aligned_cols=175 Identities=10% Similarity=-0.010 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HhhhcchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 006812 336 DAANMQIALGKFEEAINTLKGVVR----QTEKESETRALVFISMGKALCN-QEKFADAKRCLEIACGILDKKETISPEEV 410 (630)
Q Consensus 336 ~la~~~~~~g~~~~A~~~~~~~l~----~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 410 (630)
.+|.+..+.++|++.....+++.. ..+... ..-.+.+..+|.. .|....+...+.. .++.. .....
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt---~EERnLLSvAYKNvig~rR~swRiiss----iEqke-k~~~~- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFD---DEERHLLTLCIKHKISDYRTMTSQVLQ----EQTKQ-LNNDE- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHS-CSCHH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCC---HHHHHHHHHHHHHhhcccHHHHHHHHH----HHHHH-cCCHH-
Confidence 567778889999999999998887 332211 1122333333322 1222222222221 11111 01111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHH--HHHHHHHHH-----HcCChhhHHHHHHHHHHHHH
Q 006812 411 ADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSV--SARIGWLLL-----LTGKVPQAIPYLESAAERLK 483 (630)
Q Consensus 411 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~la~~~~-----~~g~~~~A~~~~~~al~~~~ 483 (630)
...+..-|.. .--.+=.......+.+..+..-+.. ...+ +-..|..|. ..|+.+.|...|+.|.++..
T Consensus 82 ---~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a-EskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~ 156 (227)
T 2o8p_A 82 ---LVKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSF-FSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC 156 (227)
T ss_dssp ---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSH-HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcH-HHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 1111221211 1112334456667777766654432 3222 234455543 35678899999999999998
Q ss_pred HhcCCCCccHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHH
Q 006812 484 ESFGPKHFGVGYIYNNLGAAYL-ELDRPQSAAQVFAFAKDIM 524 (630)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~ 524 (630)
..+.+.||-......+.+..|+ -+++.++|....++|..+.
T Consensus 157 ~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 157 EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 8788888876666666666555 5789999999999997753
No 284
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.75 E-value=49 Score=29.05 Aligned_cols=124 Identities=15% Similarity=-0.021 Sum_probs=78.1
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Q 006812 300 IYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKGVVRQTEKESETRALVFISMGKAL 379 (630)
Q Consensus 300 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 379 (630)
...+.|+.++|+......++. .|........+..+++-.|+++.|...++.+.+..+...+. +..|..+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~-a~~yr~lI~a- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG-ASQLRHLVKA- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHh------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHH-
Confidence 356678899999877766553 78888899999999999999999999999988876554332 2222222111
Q ss_pred HhhccHHHHHHHHHHHHHHHHhhc----CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 006812 380 CNQEKFADAKRCLEIACGILDKKE----TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKL 444 (630)
Q Consensus 380 ~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 444 (630)
+.. -.+++.... ...++. ......-+......|+.++|...-.++++..+..
T Consensus 78 ---------E~~---R~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 ---------AQA---RKDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ---------HHH---HHHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ---------HHH---HHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 000 001111110 012222 2233334555667899999999999998875444
No 285
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=71.55 E-value=67 Score=30.08 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCC
Q 006812 250 VANRDLAEAFVAVL--NFKEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLS 327 (630)
Q Consensus 250 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 327 (630)
.++.+||.+-...- ....++.+|++|+...+..+...| ...|..+|-.+++.+++.+|+..+..+-..+....-.
T Consensus 263 mALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~ 339 (489)
T 4gq4_A 263 MALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYC 339 (489)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred hhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccc
Confidence 44445554443221 223477888888888887766555 3456677888888899999998888887777665544
No 286
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=71.42 E-value=14 Score=32.30 Aligned_cols=56 Identities=21% Similarity=0.158 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 006812 510 PQSAAQVFAFAKDIMDVSL--GPHHADSIEACQNLSKAYS-SMGSYTLAIEFQQRAIDA 565 (630)
Q Consensus 510 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 565 (630)
.+.|...|++|.++....+ .|.||-......+.+..|. -++++++|..+.++|++-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678899999999998888 8899988877777777655 689999999999998865
No 287
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=70.48 E-value=73 Score=30.10 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHH
Q 006812 172 RFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLEL 213 (630)
Q Consensus 172 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (630)
..+.|..+|++|--++.-+.+..++...+|..+....++..+
T Consensus 144 ~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l 185 (392)
T 1zb1_A 144 DYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANI 185 (392)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHH
Confidence 578999999999888887776654555667766666555544
No 288
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=70.18 E-value=71 Score=29.84 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHcCCChh
Q 006812 267 EALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSE 329 (630)
Q Consensus 267 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 329 (630)
.++.+|.+++...+..+++.|. .-|..+|..+++.+++.+|+.....+-..++..+-..+
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~re 356 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 356 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred CHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4788899999888887766553 34667788999999999999999888888776655543
No 289
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=69.93 E-value=53 Score=28.21 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHH
Q 006812 510 PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY-SSMGSYTLAIEFQQRAIDAWES-HGPSAQDELREARRLLEQL 587 (630)
Q Consensus 510 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~A~~~~~~~ 587 (630)
.+.|...|++|.++....+.|.||.......+.+..| .-+|++++|..+.++|++-.-. +..-..+.+.++..+.+.+
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld~l~eesykDstlImqLL 225 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLL 225 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHHH
Confidence 4678899999999998889999998887777776665 4589999999998888754333 3322334566666666655
Q ss_pred HH
Q 006812 588 KI 589 (630)
Q Consensus 588 ~~ 589 (630)
+.
T Consensus 226 rD 227 (234)
T 2br9_A 226 RD 227 (234)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 290
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=69.53 E-value=75 Score=29.82 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=32.8
Q ss_pred hHHHHHHHhhHHHhhcc------------ChHHHHHHHHHHHHHHhHhhhcCCC------CCCccchhhHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFK------------RFSDSLGYLSKANRMLGRLEEEGLG------GSVEDIKPIMHAVHLELA 214 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~ 214 (630)
+.+.+++++|.+|...+ ..+.|..+|++|--++.-+.+..++ ...+|..+....++..+.
T Consensus 112 E~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~~~~~~~~~~~~~~Dls~~~l~~L~~l~ 189 (376)
T 3r9m_A 112 ELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQC 189 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCSSCCCTTSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCHHHHHHHHHHH
Confidence 34455555665554332 2578888898887777655443211 124455555554444443
No 291
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=68.37 E-value=37 Score=32.76 Aligned_cols=75 Identities=9% Similarity=-0.022 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-Hhh
Q 006812 206 MHAVHLELANVKTAMGRREEALEHLQKCLEIKEL---ILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEI-HKK 281 (630)
Q Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~ 281 (630)
.....+.+-.+|.+.|+..-+...++. ++.... .-.-.....+..++.+|.++...++|.+|.+.+..|+.. ++.
T Consensus 175 ~l~l~n~L~kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 175 LLYLVNKLNNIYFRIESPQLCSNIFKN-FQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH-hccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 334455677899999999998887754 332211 000112356778899999999999999999999999998 664
No 292
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=68.13 E-value=22 Score=24.79 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHH-cC---CCchhHHHHHHHHHHHHHHHh
Q 006812 550 GSYTLAIEFQQRAIDAWES-HG---PSAQDELREARRLLEQLKIKA 591 (630)
Q Consensus 550 g~~~~A~~~~~~al~~~~~-~~---~~~~~~~~~A~~~~~~~~~~~ 591 (630)
|+.++|+++|++.+.-+.. +. ...-..++.|.++-++|.+..
T Consensus 33 G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL 78 (89)
T 3eab_A 33 GQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNL 78 (89)
T ss_dssp SSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHH
Confidence 8899999999999877666 21 224567999999999887653
No 293
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=67.94 E-value=35 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDER 148 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 148 (630)
+..+...|...-..+ +|++|+.+|..+++.+.....
T Consensus 18 Ai~lv~~Ave~D~ag-~y~eAl~lY~~Aie~l~~alk 53 (117)
T 2cpt_A 18 AIDLASKAAQEDKAG-NYEEALQLYQHAVQYFLHVVK 53 (117)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHHHH
Confidence 344455565566666 999999999999998866543
No 294
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=67.81 E-value=62 Score=28.20 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHH
Q 006812 510 PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAY-SSMGSYTLAIEFQQRAIDAWES-HGPSAQDELREARRLLEQL 587 (630)
Q Consensus 510 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~A~~~~~~~ 587 (630)
.+.|...|++|.++....+.|.||-......+.+..| .-++++++|..+.++|++-.-. +..-..+.+.++..+.+.+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eLd~L~eesykDstlImQLL 251 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLL 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHH
Confidence 4678899999999998889999998887777777665 4579999999988888754332 2222223456666666655
Q ss_pred HH
Q 006812 588 KI 589 (630)
Q Consensus 588 ~~ 589 (630)
+.
T Consensus 252 RD 253 (261)
T 3ubw_A 252 RD 253 (261)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 295
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.83 E-value=18 Score=25.27 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALLEK 443 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 443 (630)
...+..+...+..+...|+|++|+++.+++......
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999998876443
No 296
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.53 E-value=1.2e+02 Score=30.88 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=75.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCch--hHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHH
Q 006812 417 ISMQYESMNEFETAISLLKRTLALLEKLPQAQHSE--GSVSARIGWLLLLTGKVPQAIPYLESAAERLKESFGPKHFGVG 494 (630)
Q Consensus 417 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 494 (630)
++.......+.+.|...+...... . ..... ......++.-....+...++..++.+... .......
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~---~--~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~------~~~~~~~- 287 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQA---Q--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM------RSQSTSL- 287 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH---T--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH------TCCCHHH-
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhc---c--CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc------cCCChHH-
Confidence 344444555778888887765432 1 11111 22334445444445545677777776443 1122222
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 495 YIYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 495 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
.-...+. ..+.|+++.|..+|.+.-. .........+.+|..+...|+.++|..+|+++..
T Consensus 288 -~e~~~r~-Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 288 -IERRVRM-ALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp -HHHHHHH-HHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHHHHHH-HHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2223333 4467999999998876533 2223456789999999999999999999998863
No 297
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.98 E-value=17 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=22.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 542 LSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 542 la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
.|.-....|++++|+.+|.++++.+..
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 345558899999999999999998876
No 298
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=62.55 E-value=36 Score=24.18 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIK 237 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 237 (630)
..-...+|..+...|+++.|+.+|-+|+.++
T Consensus 20 Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 20 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 3444578999999999999999998888765
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=62.23 E-value=14 Score=25.14 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Q 006812 115 GLKIALKLDQEGGDPEMTLSFANRALNVLDKD 146 (630)
Q Consensus 115 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~ 146 (630)
...+|+.|.-.| +|+.|+.+|+.+++...+.
T Consensus 15 ~~k~ARe~Al~G-nYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 15 NVKLAREYALLG-NYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHH
Confidence 456777888888 9999999999999888665
No 300
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.06 E-value=22 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 542 LSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 542 la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
.|.-....|++++|+.+|.++++.+..
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344457899999999999999998876
No 301
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=61.83 E-value=22 Score=27.42 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=35.7
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006812 505 LELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGSYTLAIEFQQRAID 564 (630)
Q Consensus 505 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 564 (630)
..+|+-++-.+.+...+. +.+-.+..+..+|.+|.+.|+..+|.+++.+|.+
T Consensus 102 v~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 445665554444443222 2322346889999999999999999999999985
No 302
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=59.85 E-value=89 Score=27.28 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHH
Q 006812 510 PQSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYS-SMGSYTLAIEFQQRAIDAWES-HGPSAQDELREARRLLEQL 587 (630)
Q Consensus 510 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~A~~~~~~~ 587 (630)
.+.|...|++|.++. ..+.+.||.......+.+..|. -++++++|..+.++|++-.-. +..-..+.+.++..+.+.+
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~eesykDstlImqLL 250 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDCYKDSTLIMQLL 250 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHH
Confidence 467889999999999 8889999988877777776654 589999999998888754333 2222334566666666655
Q ss_pred HH
Q 006812 588 KI 589 (630)
Q Consensus 588 ~~ 589 (630)
+.
T Consensus 251 RD 252 (260)
T 2npm_A 251 RD 252 (260)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 303
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.43 E-value=46 Score=22.96 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=22.6
Q ss_pred HhhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 162 VMGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
..|.-.-..|+|++|+.+|.++++.+....
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344444577999999999999999876654
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.30 E-value=56 Score=26.15 Aligned_cols=79 Identities=11% Similarity=0.003 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhh-cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCChh
Q 006812 391 CLEIACGILDKK-ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKVP 469 (630)
Q Consensus 391 ~~~~a~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 469 (630)
.+++++..+... .-.+.+....+|...+... ++ +.++|..... +-.| ...+..|...|..+...|++.
T Consensus 45 lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~---~~IG--~~~AlfY~~wA~~lE~~~~~~ 113 (164)
T 2wvi_A 45 LLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHN---QGIG--VSLAQFYISWAEEYEARENFR 113 (164)
T ss_dssp HHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHH---TTSS--TTBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHH---CCcc--hhhHHHHHHHHHHHHHcCCHH
Confidence 455555544321 1224567778888777653 33 4455554433 2223 233567788999999999999
Q ss_pred hHHHHHHHHHH
Q 006812 470 QAIPYLESAAE 480 (630)
Q Consensus 470 ~A~~~~~~al~ 480 (630)
+|.++|+..++
T Consensus 114 ~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 114 KADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999988
No 305
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=55.86 E-value=41 Score=25.95 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=39.3
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006812 461 LLLLTGKVPQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQVFAFAKD 522 (630)
Q Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 522 (630)
.+..+|+-++-.+.+...+. +.+-.+..+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus 100 ~lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44566776665555544322 3444567889999999999999999999999977
No 306
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=55.08 E-value=53 Score=23.26 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhC
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERN 149 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 149 (630)
.+..+...|...-..| +|++|+.+|..+++.+......
T Consensus 14 ~Ai~lv~~Ave~D~~g-~y~eAl~~Y~~Aie~l~~alk~ 51 (93)
T 1wfd_A 14 AAVAVLKRAVELDAES-RYQQALVCYQEGIDMLLQVLKG 51 (93)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666676 9999999999999988765433
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.36 E-value=1.8e+02 Score=31.41 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=49.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHH-----------------HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006812 294 RRLLGVIYSGLEEHQKALEQNELSQKV-----------------LKTWGLSSELLRAEIDAANMQIALGKFEEAINTLKG 356 (630)
Q Consensus 294 ~~~la~~~~~~g~~~~A~~~~~~a~~~-----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (630)
-+.+|.+|...|++++|..+|++|-.- +............|..+..++...+-++-++...+.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 367999999999999999999876421 111111222334666777778888888888888888
Q ss_pred HHHHhhhcc
Q 006812 357 VVRQTEKES 365 (630)
Q Consensus 357 ~l~~~~~~~ 365 (630)
|++....++
T Consensus 923 AI~~~~~dd 931 (950)
T 4gq2_M 923 ADASKETDD 931 (950)
T ss_dssp HHHTCCSCC
T ss_pred HHhhcccCC
Confidence 887654443
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.26 E-value=14 Score=25.13 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 538 ACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 538 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
-...+|+=|...|+|+.|+.+|+.+++...+
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999987776
No 309
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.86 E-value=96 Score=25.82 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhhc-----chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHcCC
Q 006812 352 NTLKGVVRQTEKE-----SETRALVFISMGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYESMNE 426 (630)
Q Consensus 352 ~~~~~~l~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 426 (630)
.++++++..+..+ ++-...+|...+..+ ..+...++...|..... ..-| ...+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~---~~IG---~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFN---KGIG---TKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH---HTSS---TTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHH---CCCc---HHHHHHHHHHHHHHHHcCC
Confidence 5788888766553 444566777766654 23335567777765432 2222 2456788889999999999
Q ss_pred HHHHHHHHHHHHH
Q 006812 427 FETAISLLKRTLA 439 (630)
Q Consensus 427 ~~~A~~~~~~al~ 439 (630)
+.+|...|+.+++
T Consensus 131 ~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 131 FLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999988
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.58 E-value=69 Score=25.64 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHH
Q 006812 133 LSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLE 212 (630)
Q Consensus 133 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (630)
..+++++++.+.... .-..++.....+...+... +++..+|.....- .+....+..|..
T Consensus 43 ~~lLErc~~~f~~~~-~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~--------------~IG~~~AlfY~~ 101 (164)
T 2wvi_A 43 STLLERAVEALQGEK-RYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQ--------------GIGVSLAQFYIS 101 (164)
T ss_dssp HHHHHHHHHHTTTCG-GGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHT--------------TSSTTBHHHHHH
T ss_pred HHHHHHHHHHhhhhh-hhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHC--------------CcchhhHHHHHH
Confidence 456666666653321 1122455666666555543 3455666554433 223345677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 006812 213 LANVKTAMGRREEALEHLQKCLEI 236 (630)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~al~~ 236 (630)
.|..+...|++.+|...|+.+++.
T Consensus 102 wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 102 WAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999998853
No 311
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=51.98 E-value=56 Score=22.54 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=21.8
Q ss_pred hhHHHhhccChHHHHHHHHHHHHHHhHhh
Q 006812 163 MGSANYSFKRFSDSLGYLSKANRMLGRLE 191 (630)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 191 (630)
.|.-.-..|+|++|+.+|.++++.+....
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33444567899999999999998876543
No 312
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=50.43 E-value=1.2e+02 Score=25.84 Aligned_cols=180 Identities=10% Similarity=-0.026 Sum_probs=97.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q 006812 296 LLGVIYSGLEEHQKALEQNELSQKVLKTWGLSSELLRAEIDAANMQI-ALGKFEEAINTLKGVVRQTEKESETRALVFIS 374 (630)
Q Consensus 296 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 374 (630)
.++.+..+.++|++...+..+........+.. ....-.+.+..+|- ..|....+...+....+.. +... -...
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~e-Lt~EERnLLSvAYKNvig~rR~swRiissiEqke-k~~~----~~~~ 84 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSE-FDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ-LNND----ELVK 84 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSCH----HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCC-CCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-cCCH----HHHH
Confidence 56788888999999999988877632112222 11122222222221 1223333333333322211 1111 1111
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhCCCCCC
Q 006812 375 MGKALCNQEKFADAKRCLEIACGILDKKETISPEEVADAYSEISMQYE-----SMNEFETAISLLKRTLALLEKLPQAQH 449 (630)
Q Consensus 375 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~ 449 (630)
+..-|.. .--.+-...+...+.+......+......-.+-..|..|. ..|+.+.|...|+.|.++......+.|
T Consensus 85 ~i~~yr~-kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pth 163 (227)
T 2o8p_A 85 ICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIE 163 (227)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCC
Confidence 2221211 1112234456667777766555443222222333455443 356788999999999999987666666
Q ss_pred ch-hHHHHHHHHHH-HHcCChhhHHHHHHHHHHHH
Q 006812 450 SE-GSVSARIGWLL-LLTGKVPQAIPYLESAAERL 482 (630)
Q Consensus 450 ~~-~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~ 482 (630)
|. .....+.+..| .-+++.++|..+.++++.+.
T Consensus 164 PirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 164 QLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp GSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 65 33445555544 45899999999999998754
No 313
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.04 E-value=1.1e+02 Score=25.44 Aligned_cols=85 Identities=14% Similarity=-0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCCh
Q 006812 390 RCLEIACGILDKKE-TISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKV 468 (630)
Q Consensus 390 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 468 (630)
..+++++..+.... -.+.+.....|...+..+ ..++..++.++|.-.... ..| ...+..|...|..+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~---~IG--~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK---GIG--TKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH---TSS--TTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC---CCc--HHHHHHHHHHHHHHHHcCCH
Confidence 56777777665322 235568888888888765 234466788888765542 223 23356778899999999999
Q ss_pred hhHHHHHHHHHH
Q 006812 469 PQAIPYLESAAE 480 (630)
Q Consensus 469 ~~A~~~~~~al~ 480 (630)
.+|.++|+..++
T Consensus 132 ~~A~~Vy~~GI~ 143 (202)
T 3esl_A 132 LEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999988
No 314
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.83 E-value=93 Score=24.51 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccccCcchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhcc
Q 006812 92 SEEMLQIFKQMESSFDETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFK 171 (630)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 171 (630)
.......+...+...+|++....|+..+ +..+++.+.|.... ...-....+..|...|..+...|
T Consensus 51 LErc~~~f~~~~~YknD~RyLklWl~ya-------~~~~dp~~if~~L~--------~~~IG~~~AlfYe~wA~~lE~~g 115 (152)
T 4a1g_A 51 LEHLMKEFLDKKKYHNDPRFISYCLKFA-------EYNSDLHQFFEFLY--------NHGIGTLSSPLYIAWAGHLEAQG 115 (152)
T ss_dssp HHHHHHHHTTCGGGTTCHHHHHHHHHHH-------TTBSCHHHHHHHHH--------TTTTTTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHH-------HhcCCHHHHHHHHH--------HCCCcHHHHHHHHHHHHHHHHcC
Q ss_pred ChHHHHHHHHHHHH
Q 006812 172 RFSDSLGYLSKANR 185 (630)
Q Consensus 172 ~~~~A~~~~~~al~ 185 (630)
++.+|..+|+.+++
T Consensus 116 ~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 116 ELQHASAVLQRGIQ 129 (152)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
No 315
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=49.18 E-value=1.7e+02 Score=27.25 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=39.6
Q ss_pred hHHHHHHHhhHHHhhcc---------ChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFK---------RFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELA 214 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (630)
+.+.+++++|.+|...+ ..+.|..+|++|--++.-+.+...+...+|..+....++..+.
T Consensus 115 E~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~ 183 (363)
T 3rau_A 115 EQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVNLM 183 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHH
Confidence 56677788888876543 3677889999998887776655434445566665555554443
No 316
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=47.91 E-value=67 Score=22.32 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 539 CQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 539 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
+..-|.-....|++++|+.+|..+++.+..
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334455568899999999999999998876
No 317
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.65 E-value=85 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 543 SKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 543 a~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
|.-....|++++|+.+|..+++.+..
T Consensus 25 Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 33446779999999999999998876
No 318
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=46.46 E-value=1.3e+02 Score=28.91 Aligned_cols=73 Identities=5% Similarity=-0.043 Sum_probs=51.4
Q ss_pred HHHhhHHHhhccChHHHHHHHHHHHHHHhHhhhcCCCCCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Q 006812 160 LQVMGSANYSFKRFSDSLGYLSKANRMLGRLEEEGLGGSVEDIKPIMHAVHLELANVKTAMGRREEALEHLQKCLEI-KE 238 (630)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~ 238 (630)
...+-.+|++.++..-+...+...-.. ..+ .+-..-........++.+|.++...++|.+|.+.+..|+.. +.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~-~~~-----p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPK-SML-----AHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHH-CCC-----SCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccC-CCC-----cChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 345668899999999998888543322 110 00001112355677888999999999999999999999987 54
No 319
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=44.98 E-value=74 Score=21.98 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHH
Q 006812 496 IYNNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEAC-QNLSKAY 546 (630)
Q Consensus 496 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 546 (630)
.+..-|.-+++.++|.+|...|+++.... ++|..-.++ +.++.|-
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~~n~t------en~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKALNLS------DNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHccc------cCHHHHHHHHHHHHHHH
Confidence 44455667788999999999999998643 567766655 5555553
No 320
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=44.52 E-value=75 Score=21.92 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 540 QNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
...|.-....|++++|+.+|..+++.+..
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33444557789999999999999998776
No 321
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=44.10 E-value=27 Score=23.42 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 210 HLELANVKTAMGRREEALEHLQKCLEIK 237 (630)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 237 (630)
...+|..+...|++++|..+|-+|+..+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 3478999999999999999999888654
No 322
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=43.86 E-value=77 Score=21.86 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Q 006812 111 LGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKD 146 (630)
Q Consensus 111 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~ 146 (630)
.+..+...|...-..| ++++|+.+|..+++.+...
T Consensus 12 ~A~~l~~~Av~~D~~g-~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 12 KGIELVQKAIDLDTAT-QYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666 9999999999999987654
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.81 E-value=1.5e+02 Score=25.15 Aligned_cols=80 Identities=6% Similarity=-0.040 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhh-cCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHcCCh
Q 006812 390 RCLEIACGILDKK-ETISPEEVADAYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLLTGKV 468 (630)
Q Consensus 390 ~~~~~a~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 468 (630)
..+++++..+... .-.+.+....+|...+.. . +++..+|.-... +..| ...+..|...|..+...|++
T Consensus 98 ~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~---~~p~~if~~L~~---~~IG--~~~AlfYe~wA~~lE~~g~~ 166 (223)
T 4aez_C 98 TLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I---DEPVELFSFLAH---HHIG--QESSIFYEEYANYFESRGLF 166 (223)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C---SCHHHHHHHHHH---TTCS--TTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c---CCHHHHHHHHHH---CCcc--hhHHHHHHHHHHHHHHcCCH
Confidence 4556665554422 122456777788777763 2 344555554433 2223 22356778899999999999
Q ss_pred hhHHHHHHHHHH
Q 006812 469 PQAIPYLESAAE 480 (630)
Q Consensus 469 ~~A~~~~~~al~ 480 (630)
.+|..+|+..++
T Consensus 167 ~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 167 QKADEVYQKGKR 178 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
No 324
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.20 E-value=42 Score=22.47 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 252 NRDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 252 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
-..+|..+...|++++|..+|-+|+..+.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 34578889999999999999999998765
No 325
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.73 E-value=87 Score=22.14 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 540 QNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
...|.-....|++++|+.+|..+++.+..
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33445557789999999999999998887
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.60 E-value=1.7e+02 Score=31.59 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-------------------cchHHHHHHHHHHHHHHhhccHHHHHHHH
Q 006812 332 RAEIDAANMQIALGKFEEAINTLKGVVRQTEK-------------------ESETRALVFISMGKALCNQEKFADAKRCL 392 (630)
Q Consensus 332 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 392 (630)
...+-+|.+|...|++++|..+|+++-.-... ........|..+..++...+-++-++.+.
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34578999999999999999999886422110 01112346667778888888888888888
Q ss_pred HHHHHHH
Q 006812 393 EIACGIL 399 (630)
Q Consensus 393 ~~a~~~~ 399 (630)
+.|++..
T Consensus 921 ~lAI~~~ 927 (950)
T 4gq2_M 921 LLADASK 927 (950)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 8887654
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.59 E-value=39 Score=26.97 Aligned_cols=74 Identities=3% Similarity=-0.151 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCc
Q 006812 498 NNLGAAYLELDRPQSAAQVFAFAKDIMDVSLGP-HHADSIEACQN---LSKAYSSMGSYTLAIEFQQRAIDAWESHGPSA 573 (630)
Q Consensus 498 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 573 (630)
+.-+..++..|+|=+|-+.++....-. .++ ........+.. .|..+...|+..-|..++.+++..+....+..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~---~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~ 112 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNY---GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDY 112 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTT---CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTG
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCcc
Confidence 345677778899999999998876521 111 01222333333 34456778999999999999999988876653
Q ss_pred h
Q 006812 574 Q 574 (630)
Q Consensus 574 ~ 574 (630)
.
T Consensus 113 ~ 113 (161)
T 2ijq_A 113 Y 113 (161)
T ss_dssp G
T ss_pred C
Confidence 3
No 328
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=41.82 E-value=86 Score=21.79 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 006812 207 HAVHLELANVKTAMGRREEALEHLQKCLEIKELIL 241 (630)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 241 (630)
+..+...|.-.-..|+|++|+.+|..+++.+....
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34445566667889999999999999998876553
No 329
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=40.64 E-value=2.5e+02 Score=26.82 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006812 205 IMHAVHLELANVKTAMGRREEALEHLQKCLE 235 (630)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 235 (630)
.....+..|+..+...|+|.+|--++..+..
T Consensus 9 l~~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 9 LRKTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3346677899999999999999988865443
No 330
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.67 E-value=79 Score=26.44 Aligned_cols=61 Identities=8% Similarity=-0.017 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHhhHHHhhccChH
Q 006812 108 ETELGLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKDERNNRPSLLVAMCLQVMGSANYSFKRFS 174 (630)
Q Consensus 108 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 174 (630)
..+.....+.+|..+..++ +|.+|.+.+.+|++..++. .....-.++..+--+-.-+|++.
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~-~y~~A~~~L~~A~~~~~~~-----~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDS-DFKQAEEYLSFAFEHCHRS-----SQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSCTT-----CHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHCCHh-----HHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566788899999999999 9999999999999876432 22233334444444445566654
No 331
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=39.17 E-value=51 Score=23.43 Aligned_cols=68 Identities=9% Similarity=-0.044 Sum_probs=45.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Q 006812 499 NLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADSIEAC--QNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPS 572 (630)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 572 (630)
.-|..++..|+|=+|-+.++..-.-.. + ........+ ...|..+...|+. |...+.+++..+...++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~---~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~ 75 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKAT---G-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPCP 75 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC---H-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC---C-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCc
Confidence 346677788999999999988876321 0 111222333 3334455678888 999999999988887665
No 332
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=38.50 E-value=62 Score=23.00 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 006812 253 RDLAEAFVAVLNFKEALPFGLKALEIHK 280 (630)
Q Consensus 253 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 280 (630)
..+|..+...|+++.|+.+|-+|+.++.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 4578888899999999999999998876
No 333
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=37.03 E-value=1.8e+02 Score=28.08 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 006812 511 QSAAQVFAFAKDIMDVSLGPHHADSIEACQNLSKAYSSMGS 551 (630)
Q Consensus 511 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 551 (630)
++|+++|++|++..++.-..++++....+..++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 56777788888777777777888888777777776655554
No 334
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.91 E-value=94 Score=25.99 Aligned_cols=35 Identities=14% Similarity=0.010 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 006812 247 ELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKK 281 (630)
Q Consensus 247 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 281 (630)
..+...+.+|.++...++|.+|.+.+..|+..++.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 44677889999999999999999999999987653
No 335
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=34.55 E-value=1.1e+02 Score=21.09 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=26.0
Q ss_pred HHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 156 VAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
.+..+..-|.-+++.++|.+|..+|+++..+
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 4556666788889999999999999999876
No 336
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=33.08 E-value=3.1e+02 Score=25.65 Aligned_cols=59 Identities=10% Similarity=-0.058 Sum_probs=33.5
Q ss_pred hHHHHHHHhhHHHhhccC---------hHHHHHHHHHHHHHHhHhhhcC----CCCCCccchhhHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKR---------FSDSLGYLSKANRMLGRLEEEG----LGGSVEDIKPIMHAVHLEL 213 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l 213 (630)
+.+.+++++|.++...+. .+.|..+|++|--++.-+.+.. .....+|..+....++..+
T Consensus 140 E~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l 211 (380)
T 3c3r_A 140 EKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLI 211 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCHHHHHHHHHH
Confidence 456677777777654322 4678888888877665443321 0233445555555544433
No 337
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=32.29 E-value=2.5e+02 Score=27.12 Aligned_cols=41 Identities=7% Similarity=-0.111 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc
Q 006812 266 KEALPFGLKALEIHKKGLGHNSVEVAHDRRLLGVIYSGLEE 306 (630)
Q Consensus 266 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (630)
++|+++|++|++..++....+.+.....+..++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 35666666666666666555666666666666655444433
No 338
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.32 E-value=1.7e+02 Score=21.62 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Q 006812 112 GLVGLKIALKLDQEGGDPEMTLSFANRALNVLDKD 146 (630)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~~~~ 146 (630)
+..+...|...-..| +.+.|+.+|++.+.-+...
T Consensus 22 AF~~Is~AL~~DE~g-~k~~Al~lYk~GI~eLe~G 55 (116)
T 2dl1_A 22 AFLFVNKGLNTDELG-QKEEAKNYYKQGIGHLLRG 55 (116)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcC-CHHHHHHHHHHHHHHHHHh
Confidence 344555565555666 8899999999988877665
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=29.23 E-value=4e+02 Score=27.23 Aligned_cols=25 Identities=12% Similarity=0.023 Sum_probs=16.9
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHH
Q 006812 412 DAYSEISMQY--ESMNEFETAISLLKR 436 (630)
Q Consensus 412 ~~~~~la~~~--~~~g~~~~A~~~~~~ 436 (630)
..+..+..++ ...|+++.|++.+++
T Consensus 537 ~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 537 MLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444444444 778999999877766
No 340
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.93 E-value=1.5e+02 Score=20.91 Aligned_cols=66 Identities=20% Similarity=-0.165 Sum_probs=42.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhh
Q 006812 213 LANVKTAMGRREEALEHLQKCLEIKELILEEDSRELGVANRDLAEAFVAVLNFKEALPFGLKALEIHKKG 282 (630)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 282 (630)
.|..++..|+|-+|-+.++..-...+. .........+....|..+...|+. |...+.+++......
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~--~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG--EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 566777889999998888876543211 011112233334445556667887 999999999877653
No 341
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=28.77 E-value=72 Score=30.94 Aligned_cols=34 Identities=0% Similarity=-0.086 Sum_probs=28.9
Q ss_pred ChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 153 SLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 153 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
.+....++..++.+|+..|+|++|....++++..
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3456667788999999999999999999998875
No 342
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=26.02 E-value=83 Score=30.55 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=28.8
Q ss_pred ChhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 153 SLLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 153 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
.+....++..++.+|+..|+|++|....++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3456667788999999999999999999988875
No 343
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.00 E-value=2.8e+02 Score=25.07 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHhc
Q 006812 538 ACQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIKAS 592 (630)
Q Consensus 538 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 592 (630)
.....|.-+...|++++|+..|+.++....-.-.+...+.+++.++.+..++...
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYil 158 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIV 158 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHH
Confidence 3455677789999999999999999987766555566666777777665544433
No 344
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.30 E-value=99 Score=29.94 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALL 441 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 441 (630)
.....++..+|++|+..|++++|..+.++++...
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 4455677889999999999999999999998753
No 345
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=25.02 E-value=97 Score=24.22 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 006812 537 EACQNLSKAYSSMGSYTLAIEFQQRAIDAWES 568 (630)
Q Consensus 537 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 568 (630)
..+...|.+|...|+.+.|.-+|-+...++-.
T Consensus 41 ~~llr~A~~y~~egd~e~AYily~R~~~L~~e 72 (146)
T 2xze_A 41 VEIIRMASIYSEEGNIEHAFILYNKYITLFIE 72 (146)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45566799999999999999999999988864
No 346
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=24.98 E-value=4.6e+02 Score=25.06 Aligned_cols=52 Identities=17% Similarity=0.012 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH
Q 006812 413 AYSEISMQYESMNEFETAISLLKRTLALLEKLPQAQHSEGSVSARIGWLLLL 464 (630)
Q Consensus 413 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 464 (630)
.+...+..+.+.+.|+.|+.+++..+..++...-+-...+.++..++.+|..
T Consensus 94 L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 94 LYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777888899999988888876422222224555666666653
No 347
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.70 E-value=3.2e+02 Score=24.76 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 006812 539 CQNLSKAYSSMGSYTLAIEFQQRAIDAWESHGPSAQDELREARRLLEQLKIK 590 (630)
Q Consensus 539 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~A~~~~~~~~~~ 590 (630)
....|.-+...|++++|+..|+.++....-...+...+.+++.++.+..++.
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEY 168 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREY 168 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHH
Confidence 4455777789999999999999999887765555556666666666654444
No 348
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=24.67 E-value=4.7e+02 Score=25.02 Aligned_cols=30 Identities=17% Similarity=-0.036 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 006812 455 SARIGWLLLLTGKVPQAIPYLESAAERLKE 484 (630)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 484 (630)
+...+..+.+.+.|+.|+.+++..+..++.
T Consensus 95 ~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~ 124 (436)
T 2yin_A 95 YETIIGYFDKGKMWEEAISLCKELAEQYEM 124 (436)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 344555566667788888888877776665
No 349
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=24.45 E-value=6e+02 Score=26.22 Aligned_cols=59 Identities=10% Similarity=-0.058 Sum_probs=34.1
Q ss_pred hHHHHHHHhhHHHhhccC---------hHHHHHHHHHHHHHHhHhhhcC----CCCCCccchhhHHHHHHHH
Q 006812 155 LVAMCLQVMGSANYSFKR---------FSDSLGYLSKANRMLGRLEEEG----LGGSVEDIKPIMHAVHLEL 213 (630)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l 213 (630)
+.+.+++++|.+|...+. ...|..+|++|--++.-+.+.. .+...+|..+....++..+
T Consensus 125 E~a~vLfNlaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l 196 (704)
T 2xs1_A 125 EKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLI 196 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCHHHHHHHHHH
Confidence 456667777776654322 5678888888877766543321 1233456666655555444
No 350
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=24.04 E-value=4.7e+02 Score=24.88 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=23.4
Q ss_pred HHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 157 AMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
...+..|+..+...|+|.+|-.++..+..+
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345678899999999999998888755543
No 351
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=23.59 E-value=1.1e+02 Score=29.73 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006812 408 EEVADAYSEISMQYESMNEFETAISLLKRTLALL 441 (630)
Q Consensus 408 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 441 (630)
.....++..+|++|...|++++|..+.++++...
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 4556678889999999999999999999998753
No 352
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.08 E-value=3e+02 Score=21.88 Aligned_cols=66 Identities=8% Similarity=-0.003 Sum_probs=44.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhc--chHH--HHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 006812 337 AANMQIALGKFEEAINTLKGVVRQTEKE--SETR--ALVF-ISMGKALCNQEKFADAKRCLEIACGILDKK 402 (630)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~--~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 402 (630)
-+..++..|+|=+|=+.++.+-...+.. .... ..+. ...|..+...|+...|...+.+++..+...
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 4555666788888888888777654333 2222 3333 334556677899999999999999877543
No 353
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=22.00 E-value=2.7e+02 Score=21.22 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=32.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHH
Q 006812 499 NLGAAYLELDRPQSAAQVFAFAKDIMDVSLGPHHADS-IEACQNLSKAY 546 (630)
Q Consensus 499 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~ 546 (630)
..+......|++++.-....+|..+...+...-+++. .++-.+|..+|
T Consensus 41 ~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY 89 (131)
T 3iqc_A 41 SQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLY 89 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Confidence 4455566789999999999999888766554444543 24555555555
No 354
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=20.06 E-value=90 Score=30.47 Aligned_cols=33 Identities=0% Similarity=0.021 Sum_probs=28.4
Q ss_pred hhHHHHHHHhhHHHhhccChHHHHHHHHHHHHH
Q 006812 154 LLVAMCLQVMGSANYSFKRFSDSLGYLSKANRM 186 (630)
Q Consensus 154 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (630)
+....++..++.+|+..|+|++|....++++..
T Consensus 199 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 456667788999999999999999999998875
Done!