Query 006813
Match_columns 630
No_of_seqs 308 out of 1766
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 14:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2058 Ypt/Rab GTPase activat 100.0 3.6E-51 7.8E-56 440.6 20.8 246 70-328 139-390 (436)
2 KOG4347 GTPase-activating prot 100.0 2.7E-49 5.9E-54 432.6 21.5 378 78-482 193-594 (671)
3 KOG2223 Uncharacterized conser 100.0 6.4E-40 1.4E-44 343.8 18.3 279 79-369 293-578 (586)
4 smart00164 TBC Domain in Tre-2 100.0 1.4E-38 3.1E-43 312.5 17.7 190 84-285 1-198 (199)
5 KOG2222 Uncharacterized conser 100.0 3.1E-38 6.8E-43 333.0 17.3 274 73-359 155-439 (848)
6 COG5210 GTPase-activating prot 100.0 4.3E-36 9.4E-41 335.2 20.2 238 74-321 199-443 (496)
7 PF00566 RabGAP-TBC: Rab-GTPas 100.0 4.5E-34 9.8E-39 281.7 18.9 212 90-305 1-214 (214)
8 KOG4567 GTPase-activating prot 100.0 1.6E-34 3.5E-39 294.2 15.9 258 75-335 23-357 (370)
9 KOG1092 Ypt/Rab-specific GTPas 100.0 2.9E-33 6.3E-38 294.2 15.1 258 71-336 172-471 (484)
10 KOG4436 Predicted GTPase activ 100.0 1.5E-28 3.3E-33 273.3 20.9 235 72-323 562-809 (948)
11 KOG1093 Predicted protein kina 100.0 4.2E-28 9.1E-33 262.5 17.5 243 77-339 345-591 (725)
12 KOG2224 Uncharacterized conser 99.9 2.4E-27 5.2E-32 248.7 7.6 250 59-321 416-713 (781)
13 KOG1102 Rab6 GTPase activator 99.9 1.7E-26 3.7E-31 251.0 13.9 240 75-332 133-379 (397)
14 KOG2221 PDZ-domain interacting 99.9 1.8E-24 3.9E-29 211.5 7.4 168 79-260 95-267 (267)
15 KOG1091 Ypt/Rab-specific GTPas 99.9 4.8E-23 1E-27 223.6 14.2 203 132-336 98-360 (625)
16 KOG2595 Predicted GTPase activ 99.9 2.7E-22 5.8E-27 207.1 17.2 253 75-347 46-309 (395)
17 KOG2197 Ypt/Rab-specific GTPas 99.8 3.2E-20 6.8E-25 206.1 11.7 249 82-334 172-437 (488)
18 KOG4436 Predicted GTPase activ 99.8 9.6E-19 2.1E-23 195.7 13.7 249 75-335 172-437 (948)
19 KOG2801 Probable Rab-GAPs [Int 99.6 1.3E-13 2.9E-18 140.5 18.7 269 70-354 25-308 (559)
20 KOG3636 Uncharacterized conser 99.6 2.5E-14 5.4E-19 152.2 13.8 231 87-345 36-277 (669)
21 PF14961 BROMI: Broad-minded p 97.6 0.001 2.3E-08 79.9 14.6 187 162-362 1084-1289(1296)
22 KOG1648 Uncharacterized conser 97.2 2.7E-05 5.8E-10 85.1 -3.4 211 80-320 551-785 (813)
23 KOG0982 Centrosomal protein Nu 88.6 4.5 9.7E-05 44.7 11.4 63 444-506 255-333 (502)
24 PF09726 Macoilin: Transmembra 81.3 20 0.00043 42.8 13.3 71 476-556 538-611 (697)
25 PF04728 LPP: Lipoprotein leuc 78.4 7.4 0.00016 31.4 5.8 42 479-539 13-54 (56)
26 PF07111 HCR: Alpha helical co 77.4 92 0.002 37.0 16.5 78 444-522 476-553 (739)
27 PF09726 Macoilin: Transmembra 76.9 89 0.0019 37.4 16.9 61 509-569 550-610 (697)
28 PRK03947 prefoldin subunit alp 72.0 69 0.0015 30.0 11.8 48 473-520 91-138 (140)
29 COG3132 Uncharacterized protei 71.7 3.3 7.2E-05 40.7 2.8 31 467-501 180-210 (215)
30 PF15070 GOLGA2L5: Putative go 69.5 1.1E+02 0.0024 36.2 15.1 96 436-533 26-138 (617)
31 KOG0612 Rho-associated, coiled 69.4 86 0.0019 39.4 14.3 113 434-556 632-745 (1317)
32 PF15003 HAUS2: HAUS augmin-li 69.3 96 0.0021 32.9 13.0 119 435-580 57-198 (277)
33 PF05278 PEARLI-4: Arabidopsis 65.8 67 0.0015 33.9 11.1 73 441-519 168-243 (269)
34 COG4238 Murein lipoprotein [Ce 65.5 19 0.00041 30.6 5.7 44 478-540 34-77 (78)
35 KOG4010 Coiled-coil protein TP 63.7 11 0.00023 37.5 4.5 36 473-508 41-76 (208)
36 KOG2197 Ypt/Rab-specific GTPas 63.6 5 0.00011 45.8 2.6 42 72-113 61-103 (488)
37 PRK11637 AmiB activator; Provi 63.3 1.2E+02 0.0025 34.0 13.4 41 480-520 44-84 (428)
38 TIGR02168 SMC_prok_B chromosom 62.6 3.8E+02 0.0083 33.2 19.5 12 91-102 155-166 (1179)
39 PF05701 WEMBL: Weak chloropla 61.7 3E+02 0.0066 31.7 17.7 90 480-573 334-427 (522)
40 PF00036 EF-hand_1: EF hand; 61.5 3.5 7.5E-05 28.5 0.6 26 447-472 4-29 (29)
41 PF12325 TMF_TATA_bd: TATA ele 59.7 1.4E+02 0.0031 27.7 11.0 41 479-519 19-59 (120)
42 KOG1265 Phospholipase C [Lipid 59.6 4.2E+02 0.0091 32.7 20.8 141 425-570 1022-1176(1189)
43 PF00261 Tropomyosin: Tropomyo 58.4 2.1E+02 0.0046 29.3 13.3 43 529-571 96-138 (237)
44 PF14931 IFT20: Intraflagellar 57.7 1.6E+02 0.0035 27.3 12.1 84 435-522 16-115 (120)
45 PF05130 FlgN: FlgN protein; 57.5 1.5E+02 0.0032 26.8 12.2 113 437-580 10-122 (143)
46 TIGR00570 cdk7 CDK-activating 56.8 2.7E+02 0.0058 30.2 13.9 52 470-521 122-173 (309)
47 PF07888 CALCOCO1: Calcium bin 55.5 3.9E+02 0.0086 31.1 20.3 170 442-620 335-518 (546)
48 PRK10884 SH3 domain-containing 55.2 1.7E+02 0.0036 29.8 11.6 29 544-572 137-165 (206)
49 TIGR01005 eps_transp_fam exopo 54.8 4.1E+02 0.0088 31.9 16.8 29 477-505 289-317 (754)
50 KOG2072 Translation initiation 54.8 4.8E+02 0.01 31.9 16.5 109 446-566 720-848 (988)
51 PRK09039 hypothetical protein; 53.0 3.4E+02 0.0074 29.6 16.6 76 479-554 112-187 (343)
52 COG4942 Membrane-bound metallo 52.8 3E+02 0.0065 31.0 13.9 91 418-517 147-244 (420)
53 PF06698 DUF1192: Protein of u 52.7 30 0.00065 28.2 4.7 30 479-508 24-53 (59)
54 TIGR03752 conj_TIGR03752 integ 51.6 1E+02 0.0022 35.1 10.2 42 426-467 52-94 (472)
55 KOG2224 Uncharacterized conser 49.3 6.7 0.00014 43.4 0.6 34 178-211 566-600 (781)
56 PF11932 DUF3450: Protein of u 49.0 2E+02 0.0043 29.7 11.4 44 477-520 71-114 (251)
57 TIGR03185 DNA_S_dndD DNA sulfu 48.7 5E+02 0.011 30.7 16.0 74 445-518 390-463 (650)
58 PF04849 HAP1_N: HAP1 N-termin 48.5 1.3E+02 0.0027 32.5 9.8 72 434-507 229-300 (306)
59 PF13851 GAS: Growth-arrest sp 48.4 3E+02 0.0065 27.7 17.7 63 448-512 28-90 (201)
60 PF12777 MT: Microtubule-bindi 48.2 1.8E+02 0.0039 31.6 11.4 32 482-513 14-45 (344)
61 COG1196 Smc Chromosome segrega 47.9 7E+02 0.015 31.8 20.0 92 436-527 671-774 (1163)
62 COG1842 PspA Phage shock prote 46.0 3.5E+02 0.0077 27.8 16.5 124 446-574 52-187 (225)
63 TIGR02169 SMC_prok_A chromosom 45.7 6.9E+02 0.015 31.1 19.7 19 482-500 300-318 (1164)
64 KOG1102 Rab6 GTPase activator 45.6 3.5 7.6E-05 45.7 -2.3 108 168-300 24-131 (397)
65 PRK11637 AmiB activator; Provi 44.8 2.6E+02 0.0056 31.2 12.3 22 436-457 44-65 (428)
66 COG1196 Smc Chromosome segrega 44.1 7.9E+02 0.017 31.3 19.1 36 527-562 872-907 (1163)
67 PF00769 ERM: Ezrin/radixin/mo 44.0 3.9E+02 0.0085 27.7 15.8 69 435-505 8-76 (246)
68 PF00038 Filament: Intermediat 43.7 3.9E+02 0.0084 28.1 12.9 75 438-519 222-298 (312)
69 PF08317 Spc7: Spc7 kinetochor 42.8 4.6E+02 0.01 28.2 14.1 34 472-505 205-238 (325)
70 PRK10884 SH3 domain-containing 41.6 1.8E+02 0.004 29.5 9.4 17 434-450 95-111 (206)
71 KOG3632 Peripheral benzodiazep 41.4 16 0.00036 44.3 2.2 116 434-551 163-295 (1335)
72 PRK04778 septation ring format 41.4 5.6E+02 0.012 29.9 14.7 132 422-569 271-406 (569)
73 PF05701 WEMBL: Weak chloropla 41.0 6.2E+02 0.014 29.2 15.2 54 511-564 137-190 (522)
74 PF07111 HCR: Alpha helical co 40.7 5.8E+02 0.013 30.7 14.2 47 447-513 314-360 (739)
75 PF09731 Mitofilin: Mitochondr 40.5 6.4E+02 0.014 29.2 18.3 12 488-499 316-327 (582)
76 PF07106 TBPIP: Tat binding pr 40.3 1.5E+02 0.0032 28.7 8.3 55 447-501 80-134 (169)
77 PRK10929 putative mechanosensi 39.8 8.8E+02 0.019 31.0 16.6 71 437-509 171-241 (1109)
78 PF03148 Tektin: Tektin family 38.7 3.3E+02 0.0071 30.1 11.7 82 444-525 263-366 (384)
79 PRK11239 hypothetical protein; 38.6 43 0.00093 34.1 4.3 26 479-504 186-211 (215)
80 TIGR02894 DNA_bind_RsfA transc 38.1 93 0.002 30.4 6.4 38 478-515 113-150 (161)
81 cd07667 BAR_SNX30 The Bin/Amph 37.8 2.9E+02 0.0063 28.8 10.3 71 416-492 120-190 (240)
82 PRK04863 mukB cell division pr 37.6 1.1E+03 0.024 31.1 17.9 94 477-571 377-474 (1486)
83 KOG2264 Exostosin EXT1L [Signa 37.4 1.3E+02 0.0028 34.9 8.2 67 415-503 61-127 (907)
84 KOG1916 Nuclear protein, conta 37.2 2.7E+02 0.0058 34.4 10.9 102 412-519 856-980 (1283)
85 PF04201 TPD52: Tumour protein 36.4 51 0.0011 32.2 4.3 33 476-508 29-61 (162)
86 KOG3990 Uncharacterized conser 34.5 1.7E+02 0.0036 30.7 7.8 68 484-560 226-295 (305)
87 PF11068 YlqD: YlqD protein; 34.5 3.9E+02 0.0084 25.3 9.8 26 471-496 15-40 (131)
88 KOG0994 Extracellular matrix g 34.4 1.1E+03 0.024 30.3 19.0 35 323-357 1487-1524(1758)
89 PRK02224 chromosome segregatio 34.2 9.4E+02 0.02 29.3 17.1 31 475-505 306-336 (880)
90 PF14077 WD40_alt: Alternative 33.0 32 0.00069 26.7 1.8 24 478-501 13-36 (48)
91 PF03980 Nnf1: Nnf1 ; InterPr 31.7 3.1E+02 0.0067 24.5 8.4 59 446-504 37-108 (109)
92 PF13405 EF-hand_6: EF-hand do 30.9 26 0.00057 23.9 1.1 24 447-470 4-27 (31)
93 COG3750 Uncharacterized protei 30.3 2.7E+02 0.0059 24.1 7.1 30 472-501 10-39 (85)
94 PF15619 Lebercilin: Ciliary p 29.8 5.9E+02 0.013 25.6 12.0 85 478-562 4-91 (194)
95 TIGR01010 BexC_CtrB_KpsE polys 29.5 7.5E+02 0.016 26.7 15.1 24 478-501 216-239 (362)
96 PF10186 Atg14: UV radiation r 29.5 6.4E+02 0.014 25.9 19.0 21 454-474 28-48 (302)
97 KOG0971 Microtubule-associated 29.2 7.1E+02 0.015 30.9 12.7 98 452-556 436-538 (1243)
98 PF12325 TMF_TATA_bd: TATA ele 29.1 4.8E+02 0.01 24.3 10.3 72 435-513 19-91 (120)
99 PF15450 DUF4631: Domain of un 29.1 5.1E+02 0.011 30.0 11.1 74 478-555 169-245 (531)
100 PF09744 Jnk-SapK_ap_N: JNK_SA 29.0 5.5E+02 0.012 25.0 13.0 33 473-505 86-118 (158)
101 KOG0996 Structural maintenance 29.0 1.1E+03 0.025 30.1 14.6 64 434-498 860-929 (1293)
102 KOG0044 Ca2+ sensor (EF-Hand s 28.6 50 0.0011 33.2 3.0 57 418-483 48-104 (193)
103 PHA02562 46 endonuclease subun 27.6 9.6E+02 0.021 27.3 16.5 52 476-527 358-409 (562)
104 PF00601 Flu_NS2: Influenza no 27.0 1.7E+02 0.0036 26.0 5.4 48 475-522 36-88 (94)
105 PF05911 DUF869: Plant protein 26.9 9.4E+02 0.02 29.4 13.5 65 484-548 100-164 (769)
106 PRK15396 murein lipoprotein; P 26.5 2E+02 0.0043 24.9 5.8 25 477-501 26-50 (78)
107 smart00502 BBC B-Box C-termina 26.1 4.5E+02 0.0097 23.0 9.9 16 480-495 76-91 (127)
108 PF14817 HAUS5: HAUS augmin-li 26.0 2.7E+02 0.0059 33.1 8.7 41 478-518 81-125 (632)
109 PRK06975 bifunctional uroporph 25.8 4.3E+02 0.0092 31.5 10.5 71 436-515 343-413 (656)
110 TIGR01843 type_I_hlyD type I s 25.7 8.7E+02 0.019 26.2 15.9 23 549-571 249-271 (423)
111 PF12709 Kinetocho_Slk19: Cent 25.6 2E+02 0.0044 25.3 5.8 39 475-513 48-86 (87)
112 TIGR02680 conserved hypothetic 25.6 1.2E+03 0.025 30.5 15.0 32 71-102 139-175 (1353)
113 KOG0250 DNA repair protein RAD 25.4 1.5E+03 0.032 28.8 16.6 124 434-569 257-388 (1074)
114 TIGR02680 conserved hypothetic 25.1 1.6E+03 0.035 29.2 19.9 30 545-574 360-389 (1353)
115 PLN03086 PRLI-interacting fact 25.0 3.7E+02 0.0081 31.5 9.5 45 480-537 4-48 (567)
116 PF02181 FH2: Formin Homology 24.8 2.1E+02 0.0046 30.9 7.3 37 540-576 310-346 (370)
117 COG3096 MukB Uncharacterized p 24.5 7.9E+02 0.017 30.0 11.7 95 472-566 369-469 (1480)
118 KOG4360 Uncharacterized coiled 24.4 1.2E+03 0.025 27.2 15.1 115 433-560 167-296 (596)
119 PF04111 APG6: Autophagy prote 24.3 9.1E+02 0.02 26.0 12.9 34 478-511 45-78 (314)
120 PF06248 Zw10: Centromere/kine 24.0 1.2E+03 0.026 27.2 13.6 70 434-503 16-96 (593)
121 TIGR01843 type_I_hlyD type I s 23.7 9.5E+02 0.02 26.0 19.5 16 555-570 248-263 (423)
122 PF09755 DUF2046: Uncharacteri 23.5 9.6E+02 0.021 26.0 11.5 80 472-561 218-297 (310)
123 PF13202 EF-hand_5: EF hand; P 23.5 41 0.00089 22.3 0.9 21 447-467 3-23 (25)
124 KOG2391 Vacuolar sorting prote 23.5 3.2E+02 0.0069 30.0 7.9 32 467-498 209-240 (365)
125 cd00632 Prefoldin_beta Prefold 23.3 5.3E+02 0.011 22.9 10.4 74 435-508 9-95 (105)
126 PF09731 Mitofilin: Mitochondr 23.3 1.2E+03 0.026 27.0 18.2 8 419-426 228-235 (582)
127 TIGR01837 PHA_granule_1 poly(h 23.2 3.8E+02 0.0082 24.7 7.5 26 472-497 92-117 (118)
128 PF14389 Lzipper-MIP1: Leucine 23.2 3.7E+02 0.008 23.5 7.1 60 443-502 12-80 (88)
129 PF10815 ComZ: ComZ; InterPro 23.1 55 0.0012 26.2 1.7 40 230-269 6-45 (56)
130 PF13514 AAA_27: AAA domain 22.8 1.3E+03 0.029 29.2 14.6 8 92-99 510-517 (1111)
131 cd03401 Band_7_prohibitin Band 22.8 4.2E+02 0.0091 25.7 8.4 10 477-486 117-126 (196)
132 PF09787 Golgin_A5: Golgin sub 22.2 1.2E+03 0.027 26.7 16.2 101 436-540 106-210 (511)
133 cd04789 HTH_Cfa Helix-Turn-Hel 22.1 3E+02 0.0065 24.3 6.5 23 478-500 73-95 (102)
134 PF13971 Mei4: Meiosis-specifi 21.9 2E+02 0.0043 31.9 6.2 57 442-499 15-75 (375)
135 PRK11578 macrolide transporter 21.7 9.2E+02 0.02 26.0 11.5 15 546-560 158-172 (370)
136 PF06098 Radial_spoke_3: Radia 21.4 4.4E+02 0.0095 28.3 8.5 60 489-548 152-220 (291)
137 PF04156 IncA: IncA protein; 21.3 7.6E+02 0.016 23.9 14.1 68 432-501 81-148 (191)
138 KOG3973 Uncharacterized conser 21.3 3.6E+02 0.0079 29.6 7.8 63 434-496 37-117 (465)
139 PF08317 Spc7: Spc7 kinetochor 21.2 1E+03 0.023 25.5 16.6 126 446-580 148-278 (325)
140 smart00338 BRLZ basic region l 20.9 3.3E+02 0.0071 21.9 6.0 22 480-501 30-51 (65)
141 KOG3048 Molecular chaperone Pr 20.9 2.7E+02 0.0059 26.8 6.1 41 477-556 14-54 (153)
142 KOG4571 Activating transcripti 20.9 2.2E+02 0.0048 30.4 6.1 28 476-503 262-289 (294)
143 PF13805 Pil1: Eisosome compon 20.7 1E+03 0.022 25.3 13.3 102 446-567 117-220 (271)
144 PF09486 HrpB7: Bacterial type 20.6 7.6E+02 0.017 24.1 9.3 63 454-516 47-119 (158)
145 KOG0996 Structural maintenance 20.5 1.1E+03 0.023 30.4 12.3 98 477-574 413-514 (1293)
146 PF10186 Atg14: UV radiation r 20.3 9.4E+02 0.02 24.6 17.3 19 441-459 22-40 (302)
No 1
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-51 Score=440.55 Aligned_cols=246 Identities=47% Similarity=0.889 Sum_probs=227.5
Q ss_pred CCCCCCCHHHHHHHHhcCCChhhHHHHHHHHhcCccccC-HHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCC
Q 006813 70 PEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRT-ESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPR 148 (630)
Q Consensus 70 ~~~~~~~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~~-~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~R 148 (630)
+..+..|.++||.++|+|||+++|+.||..++|...... +++|+.+++....... ...++|+.|+.|
T Consensus 139 ~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g~~~~~~~~~~yq~ll~~~~~~~~------------~~~~qI~~DL~R 206 (436)
T KOG2058|consen 139 PNDFPPRSDELKRLIRKGIPPELRGEVWWVLSGARRQLNYPGYYQELLRKGDEKKS------------PVVKQIKLDLPR 206 (436)
T ss_pred cccccCCcHHHHHHHHcCCChhhhhHHHHHHhcchhhccCchhHHHHHhcCCCccc------------hHHHHHHhcccc
Confidence 567788999999999999999999999999999444334 8899999876543211 268999999999
Q ss_pred CCCCC-CCCCh---hhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCC-hhHHHHHHHHhHHhhccCcCChhHHHH
Q 006813 149 TFPAH-PALNE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP-EENAFWTFVGIIDDYFDGYYTEEMIEA 223 (630)
Q Consensus 149 Tfp~~-~~F~~---~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~-EedAFw~L~~Lm~~~l~~yf~~~~~~l 223 (630)
|||++ +.|.. .++..|+|||.||+++||+||||||||++||++|++|+ |++|||||+.++++++|.||++++.|.
T Consensus 207 TfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~ 286 (436)
T KOG2058|consen 207 TFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGS 286 (436)
T ss_pred ccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhh
Confidence 99999 78863 45899999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Q 006813 224 QVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPA 303 (630)
Q Consensus 224 ~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~ 303 (630)
++++.+|+.+++..+|+|+.||..+++...+++++||+|+|++.+|.++++||||++|++|.++ +|++|||+++.++++
T Consensus 287 qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskv-lfr~Alai~k~~ee~ 365 (436)
T KOG2058|consen 287 QVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKV-LFRVALAILKKHEEE 365 (436)
T ss_pred hccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHH-HHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred hhcCCCHHHHHHHHHhccCCCCChH
Q 006813 304 LVTTKDAGDAITLLQSLAGSTFDSS 328 (630)
Q Consensus 304 LL~~~d~~eii~lLq~l~~~~~D~~ 328 (630)
|+.+.+..+++.+++.+....++.+
T Consensus 366 il~~~~~~~i~~~~~~~~~~~~~~~ 390 (436)
T KOG2058|consen 366 ILKEDSSKEILRVLPDLTKRSIDPD 390 (436)
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999888777776
No 2
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=100.00 E-value=2.7e-49 Score=432.62 Aligned_cols=378 Identities=33% Similarity=0.531 Sum_probs=333.3
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhcCccc--cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCC
Q 006813 78 EELESLVHGGVPKDLRGELWQAFVGVKAR--RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPA 155 (630)
Q Consensus 78 ekLK~lir~GIP~~lR~~VW~~LLGv~~~--~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTfp~~~~ 155 (630)
.+++++++.|||..+|+++|..++|+-.. .++++|..++....... .-..+.|++|++|..|+||.
T Consensus 193 ~~~~Klv~~gipe~~rgeiW~l~sGav~~~l~~~Geygkll~~~~G~~------------~~a~eEIE~Dl~rsLpEhpA 260 (671)
T KOG4347|consen 193 ILLRKLLYNGFPEDPRGEIWYLASGAVASLLLNPGEYGKLLHSVTGKR------------SVATEEIEPDLGRSLPEHPA 260 (671)
T ss_pred HHHHHHHHHhcCCChHHHHHHhhhHHHHHhhcCcHHhhhhhhcccCCc------------ccccccccCCCCCCCCcchh
Confidence 36778889999999999999999998654 46899999987765311 12468999999999999999
Q ss_pred CC-hhhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhhccCcCChhHHHHHHhHHHHHHHH
Q 006813 156 LN-EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELI 234 (630)
Q Consensus 156 F~-~~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~~~vfe~LL 234 (630)
|+ +.|...|+|||.||++.||+|||||.||.+++.+++++.|++|||+++.+++.++|+||+..+.|..+++.+|+.|+
T Consensus 261 ~Q~e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~EEeafwll~~lce~~ip~yys~~vvGtliDQ~vfe~lv 340 (671)
T KOG4347|consen 261 FQSEPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCKEEEAFWLLSKLCEIYIPDYYSKTVVGTLIDQSVFEELV 340 (671)
T ss_pred hhCCCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhccchHHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 97 67999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcCCCHHHHH
Q 006813 235 RERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGDAI 314 (630)
Q Consensus 235 k~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~LL~~~d~~eii 314 (630)
+.+.|.|+.|+..+| ...++.++||+|+|...+|++..+||.|+||.+|+++ +|.+||||++.+.+.|+++.|.++++
T Consensus 341 e~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rv-lFqiaLail~~N~~~il~~~dDge~~ 418 (671)
T KOG4347|consen 341 EDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRV-LFQIALAILKQNAERILSATDDGEAM 418 (671)
T ss_pred HHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHH-HHHHHHHHHHhhHHHhcccCCchHHH
Confidence 999999999999999 6889999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHhccCCC---------------CChHHHHHHHHhhcccCCHHHHHHHHHHhhHHHHHHHHHHhhcC--Cccc----C
Q 006813 315 TLLQSLAGST---------------FDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGG--RVWK----D 373 (630)
Q Consensus 315 ~lLq~l~~~~---------------~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~~~e~r~k~~--~~~~----~ 373 (630)
..++++..+. ..+.+|+.+||..|..|+...|+.+|.||+..|++.+|...|+. |..- -
T Consensus 419 ~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~kFg~it~e~ie~~R~K~r~~v~q~le~~~krt~lrs~~~~~~l 498 (671)
T KOG4347|consen 419 MVLGNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEKFGDITDELIEHLRKKHRLGVLQSLEDFTKRTILRSVVQTTSL 498 (671)
T ss_pred HHHHHHHHhccCCCCCccccchhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccCcc
Confidence 8887654432 22467999999999999999999999999999999999988874 3332 2
Q ss_pred CchhhhhhhcccCCcchhhhhccCCCCCCCCccCCCccccCccccHHHHhcCCCCCCcccccchHHHHHHHHHHHHHHHH
Q 006813 374 PNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLE 453 (630)
Q Consensus 374 ~~~la~~l~~~~~d~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~el~~lL~ 453 (630)
...-.+.||+.++..+.. ......++||+. ++.+|| ++.++|-.+|..+.||. +..-+..++|+|+|
T Consensus 499 t~~dL~~lYd~f~~e~~~--~~~~~~~~~p~~-~~~eqy-i~~~~f~~~f~~l~pw~---------~s~~~~~rlF~l~D 565 (671)
T KOG4347|consen 499 TNTDLENLYDLFKEEHLT--NSIGLGRSDPDF-EAFEQY-IDYAQFLEVFRELLPWA---------VSLIFLERLFRLLD 565 (671)
T ss_pred CHHHHHHHHHHHHHHHhc--cCcccCCCCCCc-hHHHHH-HHHhhHHHHhhccCchh---------HHHHHHHHHHHhcc
Confidence 344467789966655222 323334788887 566899 99999999999999999 23347889999999
Q ss_pred hhhHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 006813 454 DKRSAVLRAEELETALMEMVKQDNRRQLS 482 (630)
Q Consensus 454 e~~~~~lr~~ele~~l~~m~~~d~~~~l~ 482 (630)
.+-.++|.|.+|.++|.++|.+|+.++|+
T Consensus 566 ~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~ 594 (671)
T KOG4347|consen 566 DSMTGLLTFKDLVSGLSILKAGDALEKLK 594 (671)
T ss_pred cCCcceeEHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999986
No 3
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.4e-40 Score=343.83 Aligned_cols=279 Identities=28% Similarity=0.493 Sum_probs=241.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhcccc---cccCCCCCCchhhHHHHHhcCCCCCCCCCC
Q 006813 79 ELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADES---KEHDNSFGVPRKWKKQIEKDIPRTFPAHPA 155 (630)
Q Consensus 79 kLK~lir~GIP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~s---~~~~~~~~~~~k~~~qIekDl~RTfp~~~~ 155 (630)
+.+.++|.|||+.+||+||..-+|+........|..++.+....... .+..++.+..+....+|+.|+.||||+..+
T Consensus 293 R~relWwQGiP~~VRGkvW~laIGNel~it~elfd~~la~Aker~ak~~aeq~~~sa~~re~sv~~i~LDisrTfpsl~i 372 (586)
T KOG2223|consen 293 RVRELWWQGIPPSVRGKVWSLAIGNELNITYELFDIALARAKEREAKSLAEQMSNSAADREASVELIKLDISRTFPSLSI 372 (586)
T ss_pred HHHHHHHccCChhhcchhhHhhhCcccccCHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchhheeechhccCcceee
Confidence 56789999999999999999999999999999999998776643111 111234444555678999999999999999
Q ss_pred CChhh--HHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhhc-cCcCChhHHHHHHhHHHHHH
Q 006813 156 LNEDG--RDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYF-DGYYTEEMIEAQVDQLVFEE 232 (630)
Q Consensus 156 F~~~g--~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~l-~~yf~~~~~~l~~~~~vfe~ 232 (630)
|+.+| .+.|..||.||+.|.|++||+|||.||+|+|++.|++.+||.+|.+|+++.+ ..||......+......|+.
T Consensus 373 Fqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~q~Aff~~d~s~m~~yf~tfe~ 452 (586)
T KOG2223|consen 373 FQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPCQQAFFRVDHSSMLSYFATFEV 452 (586)
T ss_pred eccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHHHHHHHhcCcHHHHHHHHHHHH
Confidence 98766 7999999999999999999999999999999999999999999999999974 57888888888888899999
Q ss_pred HHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcCCCHHH
Q 006813 233 LIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGD 312 (630)
Q Consensus 233 LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~LL~~~d~~e 312 (630)
.+++.+|+|+.||+++.+.|.+|++.|+.++|+..+|++.++||||+|+.+|..| ||+.+++||+++++.|+.+ |+..
T Consensus 453 ~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeF-lfr~~lgIlklyepkLl~m-Df~~ 530 (586)
T KOG2223|consen 453 FLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEF-LFRTALGILKLYEPKLLVM-DFIH 530 (586)
T ss_pred HHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHH-HHHHHHHHHHHccchHhhh-hHHH
Confidence 9999999999999999999999999999999999999999999999999999998 9999999999999999985 8999
Q ss_pred HHHHHHhccCCCCChHHHH-HHHHhhcccCCHHHHHHHHHHhhHHHHHHHHHHhhcCC
Q 006813 313 AITLLQSLAGSTFDSSQLV-FTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGGR 369 (630)
Q Consensus 313 ii~lLq~l~~~~~D~~~Li-~~A~~~~~~i~~~~L~~LR~k~~~~v~~~~e~r~k~~~ 369 (630)
+.++|..++. .+..++++ ..|+. .. .-|+|.+.+|.+.++++++.+.
T Consensus 531 ~~qfLtklp~-dL~~eelF~~i~~~--------~~-~sr~kkwsqvf~~i~kd~~eg~ 578 (586)
T KOG2223|consen 531 VAQFLTKLPE-DLTPEELFMHIAYI--------QM-QSRSKKWSQVFQEIDKDVNEGG 578 (586)
T ss_pred HHHHHHhCcc-cCCHHHHHHHHHHH--------hh-hhhchhHHHHHHHHHhhccccC
Confidence 9999988876 34444443 33332 11 2588889999999999988765
No 4
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=1.4e-38 Score=312.55 Aligned_cols=190 Identities=44% Similarity=0.807 Sum_probs=173.4
Q ss_pred HhcCCChhhHHHHHHHHhcCcccc---CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCCCh--
Q 006813 84 VHGGVPKDLRGELWQAFVGVKARR---TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNE-- 158 (630)
Q Consensus 84 ir~GIP~~lR~~VW~~LLGv~~~~---~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTfp~~~~F~~-- 158 (630)
+++|||+.+|+.||+.++|+.... .+..|+.+++...... .....+|++|+.||+|++++|+.
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~------------~~~~~~I~~Dv~Rt~~~~~~f~~~~ 68 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKD------------KSIVHQIEKDLRRTFPEHSFFQDKE 68 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCC------------hhhHHHHhcccCCCCCCchhhcCCC
Confidence 478999999999999999998754 4788999987653211 12468999999999999999974
Q ss_pred -hhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcC-ChhHHHHHHHHhHHhhccCcCChhHHHHHHhHHHHHHHHHh
Q 006813 159 -DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-PEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRE 236 (630)
Q Consensus 159 -~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~-~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~~~vfe~LLk~ 236 (630)
.+++.|+|||.+|+.+||++|||||||+||++|++++ +|++|||||+++|+++.+++|.+++.++...+.+|+.+++.
T Consensus 69 ~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 148 (199)
T smart00164 69 GPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKE 148 (199)
T ss_pred cccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999 49999999999999988888899999999999999999999
Q ss_pred hChhhhhhhhh-ccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCC
Q 006813 237 RFPKLVHHLDY-LGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGN 285 (630)
Q Consensus 237 ~~PeL~~HL~~-lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~ 285 (630)
++|+||.||.+ .|+++..|+.+||+|+|++.+|++.++||||+||.+|.
T Consensus 149 ~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 149 YDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 99999999996 99999999999999999999999999999999999995
No 5
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.1e-38 Score=333.05 Aligned_cols=274 Identities=29% Similarity=0.567 Sum_probs=247.4
Q ss_pred CCCCHHHHHHHHhc-CCChhhHHHHHHHHhcCcccc--CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCC
Q 006813 73 YFPWKEELESLVHG-GVPKDLRGELWQAFVGVKARR--TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRT 149 (630)
Q Consensus 73 ~~~~~ekLK~lir~-GIP~~lR~~VW~~LLGv~~~~--~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RT 149 (630)
..+-.++++.+++. |||+.+|+.+|+.|+|+...+ .+..|+++++....... .+-.||++|+.|+
T Consensus 155 ~~~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~ae~sy~~ilk~~andk~------------~~~~qiekdllr~ 222 (848)
T KOG2222|consen 155 MELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDAETSYEDILKACANDKL------------MIGKQIEKDLLRI 222 (848)
T ss_pred cccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhccccccHHHHHHHhccccc------------chhHHHHHHHHHh
Confidence 34556789988875 599999999999999997644 45679999887654332 2568999999999
Q ss_pred CCCCCCCC---hhhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhhc-cCcCChhHHHHHH
Q 006813 150 FPAHPALN---EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYF-DGYYTEEMIEAQV 225 (630)
Q Consensus 150 fp~~~~F~---~~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~l-~~yf~~~~~~l~~ 225 (630)
.|++.+|. ..|..+|+|||.+.++.+|++||||||..|++.||++|.|+.|||++..+++..+ ++||+.+..|++.
T Consensus 223 lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp~nfysqtllgiqa 302 (848)
T KOG2222|consen 223 LPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILPANFYSQTLLGIQA 302 (848)
T ss_pred CCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcCchhhhhhHhccch
Confidence 99999995 5689999999999999999999999999999999999999999999999999986 5899999999999
Q ss_pred hHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhh
Q 006813 226 DQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALV 305 (630)
Q Consensus 226 ~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~LL 305 (630)
+..+..+|+.-+.|.|-..|..+.++.++.+..||+|+|++++.....+||||.||++|.-. +|++.++||+..+.+|.
T Consensus 303 derv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~-ifql~i~ilkmkeqdi~ 381 (848)
T KOG2222|consen 303 DERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGIN-IFQLIIGILKMKEQDIK 381 (848)
T ss_pred hHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcch-hHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 99999999999999997
Q ss_pred cC----CCHHHHHHHHHhccCCCCChHHHHHHHHhhcccCCHHHHHHHHHHhhHHHHH
Q 006813 306 TT----KDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLL 359 (630)
Q Consensus 306 ~~----~d~~eii~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~ 359 (630)
.. .+..+++..|..+|....|++.++..|-..-..++...|..+|.+|.+.+++
T Consensus 382 ~iaettensa~if~als~ip~~vtdve~l~~~~~~~~~sis~~li~~~rkkh~a~lma 439 (848)
T KOG2222|consen 382 EIAETTENSADIFNALSDIPAEVTDVEKLFEQAGEFEFSISDHLIAEHRKKHLAVLMA 439 (848)
T ss_pred HHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhhcccchhHHHHHHHHHHhHHhhhh
Confidence 55 6889999999999999999999999887755689999999999999876643
No 6
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=4.3e-36 Score=335.24 Aligned_cols=238 Identities=35% Similarity=0.617 Sum_probs=209.9
Q ss_pred CCCHHHHHHHHhcCCChhhHHHHHHHHhcCcccc--CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCC
Q 006813 74 FPWKEELESLVHGGVPKDLRGELWQAFVGVKARR--TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFP 151 (630)
Q Consensus 74 ~~~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~--~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTfp 151 (630)
.....+++.+++.|||..+|+.||..++|+.... .+..|..+.......... ......+|++|+.||||
T Consensus 199 ~~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~---------~~~~~~~i~~Dl~rt~~ 269 (496)
T COG5210 199 PVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNLHREAKIP---------TQEIISQIEKDLSRTFP 269 (496)
T ss_pred hhhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCchHHHHHHHHHHhcCCC---------cHHHHHHHHcccccccc
Confidence 3455689999999999999999999999997643 567788877644322111 00358999999999999
Q ss_pred CCCCCCh-hhHH--HHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCC-hhHHHHHHHHhHHh-hccCcCChhHHHHHHh
Q 006813 152 AHPALNE-DGRD--SLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP-EENAFWTFVGIIDD-YFDGYYTEEMIEAQVD 226 (630)
Q Consensus 152 ~~~~F~~-~g~~--~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~-EedAFw~L~~Lm~~-~l~~yf~~~~~~l~~~ 226 (630)
.++.|+. .+.. .|+|||.+|+.+||.+|||||||+|+|+||.+|+ |++|||||++||+. +++++|..++.|+..+
T Consensus 270 ~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~ 349 (496)
T COG5210 270 DNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRD 349 (496)
T ss_pred ccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCcHHHHH
Confidence 9999963 4444 4999999999999999999999999999999998 99999999999994 5899999999999999
Q ss_pred HHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhc
Q 006813 227 QLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVT 306 (630)
Q Consensus 227 ~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~LL~ 306 (630)
+.++..+++..+|+||.||...|+....|+++||+|+|.+.+|++.++||||++|++|..+ +|.+++|++...+..++.
T Consensus 350 ~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~-l~~~~~~~l~~~~~~l~~ 428 (496)
T COG5210 350 LKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSM-LFQLALAILKLLRDKLLK 428 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHH-HHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred CCCHHHHHHHHHhcc
Q 006813 307 TKDAGDAITLLQSLA 321 (630)
Q Consensus 307 ~~d~~eii~lLq~l~ 321 (630)
+.+...+..++..+.
T Consensus 429 ~~~~~~~~~~~~~~~ 443 (496)
T COG5210 429 LDSDELLDLLLKQLF 443 (496)
T ss_pred cCchhHHHHHHHhhh
Confidence 877777776665543
No 7
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=4.5e-34 Score=281.72 Aligned_cols=212 Identities=36% Similarity=0.683 Sum_probs=169.8
Q ss_pred hhhHHHHHHHHhcCccccCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCCC-hhhHHHHHHHH
Q 006813 90 KDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALN-EDGRDSLRRLL 168 (630)
Q Consensus 90 ~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTfp~~~~F~-~~g~~~L~rIL 168 (630)
+++|+.||+.|+|+.+.....++............ . ........+..++|.+|+.||+++.+.+. +.++..|.+||
T Consensus 1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL 77 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESK-S--SNSNKLDNKIFEQIDKDVNRTFPNSFLFKNEQNQKSLERIL 77 (214)
T ss_dssp -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHH-H--HHCTSTCHTCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHH-H--HHhccccchHHHHHHHhhhhhcccchhhhhcchHHHHHHHH
Confidence 46899999999999751111111100000000000 0 00111223458999999999999555554 57789999999
Q ss_pred HHHHhhCCCCCcccchhHHHHHHh-hcCChhHHHHHHHHhHHhhccCcCChhHHHHHHhHHHHHHHHHhhChhhhhhhhh
Q 006813 169 LAYALHNPSVGYCQAMNFFAGLLL-LLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDY 247 (630)
Q Consensus 169 ~aya~~nP~IGY~QGMn~IaalLL-l~~~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~~~vfe~LLk~~~PeL~~HL~~ 247 (630)
.+|+.++|++||||||+.|+++++ .+.+|++|||||++++...++.+|..+..+++..+..++.++++++|+|+.||++
T Consensus 78 ~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~ 157 (214)
T PF00566_consen 78 SAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQ 157 (214)
T ss_dssp HHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHHhhhhhhhhhhhh
Confidence 999999999999999999999999 5678999999999999777889999999999999999999999999999999999
Q ss_pred ccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhh
Q 006813 248 LGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALV 305 (630)
Q Consensus 248 lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~LL 305 (630)
.|+++..|+.+||+|+|++.+|++.++|||| ++.+|.++.++++++|+++..+++||
T Consensus 158 ~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 158 LGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp TT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 77799987688899999999999986
No 8
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=294.22 Aligned_cols=258 Identities=24% Similarity=0.406 Sum_probs=209.9
Q ss_pred CCHHHHHHHHhcCCC--hhhHHHHHHHHhcCcccc----------CHHHHHHHHHHhhhcc-------------cccccC
Q 006813 75 PWKEELESLVHGGVP--KDLRGELWQAFVGVKARR----------TESYYQDLLAQEINAD-------------ESKEHD 129 (630)
Q Consensus 75 ~~~ekLK~lir~GIP--~~lR~~VW~~LLGv~~~~----------~~~~Y~~Ll~~~~~~~-------------~s~~~~ 129 (630)
+..++|+.++..|+| ..+|+.+|++++|+.+.. ....|........... ...+++
T Consensus 23 id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhP 102 (370)
T KOG4567|consen 23 IDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHP 102 (370)
T ss_pred hhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCC
Confidence 667889999999999 679999999999997632 2345665554432111 011111
Q ss_pred CC---------CCCchhhHHHHHhcCCCCCCCCCCCCh----h----------------------h--HHHHHHHHHHHH
Q 006813 130 NS---------FGVPRKWKKQIEKDIPRTFPAHPALNE----D----------------------G--RDSLRRLLLAYA 172 (630)
Q Consensus 130 ~~---------~~~~~k~~~qIekDl~RTfp~~~~F~~----~----------------------g--~~~L~rIL~aya 172 (630)
.+ .+.+.+...||++|+.||.|+.++|+. + | .....|||..||
T Consensus 103 ls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyA 182 (370)
T KOG4567|consen 103 LSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYA 182 (370)
T ss_pred CCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHh
Confidence 11 334456678999999999999888742 1 1 124578999999
Q ss_pred hhCCCCCcccchhHHHHHHhhcCC-----------hhHHHHHHHHhHHhhccCc---CChhHHHHHHhHHHHHHHHHhhC
Q 006813 173 LHNPSVGYCQAMNFFAGLLLLLMP-----------EENAFWTFVGIIDDYFDGY---YTEEMIEAQVDQLVFEELIRERF 238 (630)
Q Consensus 173 ~~nP~IGY~QGMn~IaalLLl~~~-----------EedAFw~L~~Lm~~~l~~y---f~~~~~~l~~~~~vfe~LLk~~~ 238 (630)
..||+|||+||||.|+|++++++. |+|||+||..+|..+-.+| ...+..|++..+.-|..+|++++
T Consensus 183 KLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D 262 (370)
T KOG4567|consen 183 KLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHD 262 (370)
T ss_pred hcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhh
Confidence 999999999999999999999982 7899999999998753333 23456788888889999999999
Q ss_pred hhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhhhHhhcCCCHHHHHHHH
Q 006813 239 PKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRV-MLFRTALALMELYGPALVTTKDAGDAITLL 317 (630)
Q Consensus 239 PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~-~LfrvaLALL~~~~~~LL~~~d~~eii~lL 317 (630)
-+||.||+..++.|.+|+++||.+|++.+||+++|+||||.+|+...++ +|..+|+|+|...++.|+. .|+..-+.+|
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~-~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILE-GDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHh-cchHHHHHHH
Confidence 9999999999999999999999999999999999999999999987665 4677999999999999998 6999999999
Q ss_pred HhccCCCCChHHHHHHHH
Q 006813 318 QSLAGSTFDSSQLVFTAC 335 (630)
Q Consensus 318 q~l~~~~~D~~~Li~~A~ 335 (630)
|+++ +.|+..++..|-
T Consensus 342 Q~yp--~tdi~~~l~~A~ 357 (370)
T KOG4567|consen 342 QNYP--TTDISKMLAVAD 357 (370)
T ss_pred hcCC--CCCHHHHHHHHH
Confidence 9988 789988886554
No 9
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-33 Score=294.21 Aligned_cols=258 Identities=24% Similarity=0.387 Sum_probs=216.9
Q ss_pred CCCCCCHHHHHHHHhcCCChhhHHHHHHHHhcCccc----------cCHHHHHHHHHHhhhcccccccCCCCCCchhhHH
Q 006813 71 EPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKAR----------RTESYYQDLLAQEINADESKEHDNSFGVPRKWKK 140 (630)
Q Consensus 71 ~~~~~~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~----------~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~ 140 (630)
...-...++|++++++|||+.+|+.+|+.|+|+.+. .+...|..++.......... .......+
T Consensus 172 ~~~~id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~------~~~~d~~r 245 (484)
T KOG1092|consen 172 DSPIIDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNG------DEDQDTWR 245 (484)
T ss_pred CcccccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCc------cccCcccc
Confidence 344567789999999999999999999999998652 23456777776665433321 12233679
Q ss_pred HHHhcCCCCCCCCCCCChh-hHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcC-----C------------------
Q 006813 141 QIEKDIPRTFPAHPALNED-GRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-----P------------------ 196 (630)
Q Consensus 141 qIekDl~RTfp~~~~F~~~-g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~-----~------------------ 196 (630)
||.-|++|+.|..++|+.. .++.+.|||..++.++|..||+||.|+++.+++.++ +
T Consensus 246 QI~id~prm~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~ 325 (484)
T KOG1092|consen 246 QIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENA 325 (484)
T ss_pred ccccCCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHH
Confidence 9999999999999999754 589999999999999999999999998887777553 1
Q ss_pred ---hhHHHHHHHHhHHhhccCcCChhHHHHHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHH
Q 006813 197 ---EENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESV 273 (630)
Q Consensus 197 ---EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~v 273 (630)
|.+||||+.+|++.... -|....+|++.....++.|++..|+.+|+||+.+|++...|+++|+.|||.++||+..+
T Consensus 326 ~~iEADsyWClskLLD~IQD-NYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~ 404 (484)
T KOG1092|consen 326 EDIEADAYWCLSKLLDGIQD-NYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCT 404 (484)
T ss_pred hhhhhhHHHHHHHHHHHhhh-hhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhH
Confidence 77999999999998654 44667889999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCch--HHHHHHHHHHHHhhhHhhcCCCHHHHHHHHHhccCCCCChH---HHHHHHHh
Q 006813 274 LRVWDVLLYEGNRV--MLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSS---QLVFTACM 336 (630)
Q Consensus 274 lRIWD~ff~eG~~~--~LfrvaLALL~~~~~~LL~~~d~~eii~lLq~l~~~~~D~~---~Li~~A~~ 336 (630)
+|+||.|++++..+ ++.+||+|+|...+++|++ +|+.+++.+||+++...|.-. -|+..|+.
T Consensus 405 iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e-~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~ 471 (484)
T KOG1092|consen 405 IRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELME-NDFQELILFLQNLPTHNWSDREIELLLSEAFR 471 (484)
T ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 99999999996554 3556999999999999995 699999999999999888544 45566654
No 10
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=273.29 Aligned_cols=235 Identities=32% Similarity=0.554 Sum_probs=210.3
Q ss_pred CCCCCHHHHHHHHhcCCChhhHHHHHHHHhcCc---------cccCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHH
Q 006813 72 PYFPWKEELESLVHGGVPKDLRGELWQAFVGVK---------ARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQI 142 (630)
Q Consensus 72 ~~~~~~ekLK~lir~GIP~~lR~~VW~~LLGv~---------~~~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qI 142 (630)
+.....+.+-..++.|+|.+-||++|.+|.--. .+...--|+++++.-.. ..+.|
T Consensus 562 ~~k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqLte----------------~qhAi 625 (948)
T KOG4436|consen 562 KIKKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQLTE----------------QQHAI 625 (948)
T ss_pred cccccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHHHH----------------HHHHH
Confidence 444577888899999999999999999996321 11122346777766542 35789
Q ss_pred HhcCCCCCCCCCCCC---hhhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhh-ccCcCCh
Q 006813 143 EKDIPRTFPAHPALN---EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDY-FDGYYTE 218 (630)
Q Consensus 143 ekDl~RTfp~~~~F~---~~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~-l~~yf~~ 218 (630)
..|+-||||+|++|. +.|+..|.|+|.+|+..+|++|||||..+|||+||++|+|++||-++-.||-.. ++.-|.+
T Consensus 626 ~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~r~~r~qy~p 705 (948)
T KOG4436|consen 626 LIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFDRGMRKQYRP 705 (948)
T ss_pred HHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHHHhhHhhhch
Confidence 999999999999997 468999999999999999999999999999999999999999999999999875 4667899
Q ss_pred hHHHHHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006813 219 EMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALME 298 (630)
Q Consensus 219 ~~~~l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~ 298 (630)
+|..++..++.+..++..+.|+||+|++...|.|..|+.+||+|+|+.-||+..+.||+|.+|..|..+ +|++++++|.
T Consensus 706 dm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tev-ifK~a~~lls 784 (948)
T KOG4436|consen 706 DMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEV-IFKVALSLLS 784 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccch-hhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HhhhHhhcCCCHHHHHHHHHhccCC
Q 006813 299 LYGPALVTTKDAGDAITLLQSLAGS 323 (630)
Q Consensus 299 ~~~~~LL~~~d~~eii~lLq~l~~~ 323 (630)
.++..|+.+.++++|+.++++..+.
T Consensus 785 v~k~~l~e~dn~e~i~d~~k~~~p~ 809 (948)
T KOG4436|consen 785 VHKQLLLEKDNFEEIVDFLKTTLPK 809 (948)
T ss_pred hhHHHHHhhhhHHHHHHHHHHhhhh
Confidence 9999999999999999999987653
No 11
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.95 E-value=4.2e-28 Score=262.49 Aligned_cols=243 Identities=23% Similarity=0.377 Sum_probs=209.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCC
Q 006813 77 KEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPAL 156 (630)
Q Consensus 77 ~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTfp~~~~F 156 (630)
+..+-...+.|+|+.+|+.+|..|+|+....... |..+ .+.. +-...+||+.|++|+.......
T Consensus 345 ~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~~~a~-y~~I-Dk~T--------------s~~tdrqievdiprchQyd~~l 408 (725)
T KOG1093|consen 345 RLQILREAYVDVPPLYRGFIWAALLQLEENHTAF-YTLI-DKGT--------------SHSTDRQIEVDIPRCHQYDELL 408 (725)
T ss_pred HHHHHHHhccCCChhHhHHHHHHHhcCccccchh-hhhh-hcCC--------------CCcchhhhhcccchhhhccccc
Confidence 3444455567999999999999999987655443 4333 2211 0114689999999999877666
Q ss_pred C-hhhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcC--ChhHHHHHHHHhHHhhccCcCCh-hHHHHHHhHHHHHH
Q 006813 157 N-EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM--PEENAFWTFVGIIDDYFDGYYTE-EMIEAQVDQLVFEE 232 (630)
Q Consensus 157 ~-~~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~--~EedAFw~L~~Lm~~~l~~yf~~-~~~~l~~~~~vfe~ 232 (630)
. ..|...|+|+|.||+..+|...|.||+..+|++|++.. +|.-||.|+..++-+|+.+||.. +...++..+..|..
T Consensus 409 sSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vikeyLs~f~~ 488 (725)
T KOG1093|consen 409 SSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVIKEYLSMFSQ 488 (725)
T ss_pred CCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 5 57899999999999999999999999999999998754 78999999999999999998877 55667788899999
Q ss_pred HHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcCCCHHH
Q 006813 233 LIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGD 312 (630)
Q Consensus 233 LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~LL~~~d~~e 312 (630)
++..++|+|++||..+|+.+.+|+++||+|+|+++||.+..+.+||-++..++.| .+.+++|++...++.||.| ++.|
T Consensus 489 l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SF-plmi~vAil~~lR~~LLa~-nfne 566 (725)
T KOG1093|consen 489 LLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSF-PLMIGVAILIQLRDPLLAC-NFNE 566 (725)
T ss_pred HHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHhhhhhhhC-Cchh
Confidence 9999999999999999999999999999999999999999999999999999999 6669999999999999997 8999
Q ss_pred HHHHHHhccCCCCChHHHHHHHHhhcc
Q 006813 313 AITLLQSLAGSTFDSSQLVFTACMGYL 339 (630)
Q Consensus 313 ii~lLq~l~~~~~D~~~Li~~A~~~~~ 339 (630)
.+.++.+++ .+|.+..|+.++..|.
T Consensus 567 ~illf~d~p--dldId~~Ires~~l~e 591 (725)
T KOG1093|consen 567 CILLFSDLP--DLDIDVCIRESYHLME 591 (725)
T ss_pred heeeeccCC--cccHHHHHHHHhhhhh
Confidence 999999988 8899999998877443
No 12
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=2.4e-27 Score=248.68 Aligned_cols=250 Identities=23% Similarity=0.496 Sum_probs=178.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHhcCCChhhHHHHHHHHhcCcccc------------CHHHHHHHHHHhhhccccc
Q 006813 59 DDKGSQEDEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARR------------TESYYQDLLAQEINADESK 126 (630)
Q Consensus 59 ~d~~s~~~~~~~~~~~~~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~------------~~~~Y~~Ll~~~~~~~~s~ 126 (630)
|+.|++++...+. |.++.+||..++|++||++|+.++.-. +...|+++.++... ++
T Consensus 416 ne~gqiedd~~lr---------k~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrly---sm 483 (781)
T KOG2224|consen 416 NEKGQIEDDLKLR---------KAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLY---SM 483 (781)
T ss_pred hhcccchhHHHhh---------hhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhh---cC
Confidence 5556665554433 778899999999999999999886521 24567777655432 12
Q ss_pred ccCCCCCCchhhHHHHHhcCCCCCCCCCCCC---hhhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhh-cCChhHHHH
Q 006813 127 EHDNSFGVPRKWKKQIEKDIPRTFPAHPALN---EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLL-LMPEENAFW 202 (630)
Q Consensus 127 ~~~~~~~~~~k~~~qIekDl~RTfp~~~~F~---~~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl-~~~EedAFw 202 (630)
+......+++.+.-.++|||.||..++|||. +++.+.++|||..|+.|||.+||.|||+++.++.|. +-+|.++||
T Consensus 484 speeh~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfw 563 (781)
T KOG2224|consen 484 SPEEHIAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFW 563 (781)
T ss_pred CHHHHHHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhh
Confidence 2212223333333467899999999999996 456899999999999999999999777766555543 334555555
Q ss_pred HHHHhHHhh------------------------c-cCcC--ChhHHHHHHhHHHHHHHHHhhChhhhhhhhhccccc--h
Q 006813 203 TFVGIIDDY------------------------F-DGYY--TEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQV--T 253 (630)
Q Consensus 203 ~L~~Lm~~~------------------------l-~~yf--~~~~~~l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~--~ 253 (630)
||+++|+.+ + ..|| ++....+...+..+++|++...|.+|+||..+|-+. .
T Consensus 564 cfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lel 643 (781)
T KOG2224|consen 564 CFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLEL 643 (781)
T ss_pred hhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhH
Confidence 555555411 0 1222 334455556667899999999999999999988443 4
Q ss_pred hhhhhhhhhhhcccCChHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHhhcCC-CHHHHHHHHHhcc
Q 006813 254 WISGPWFLSIFVNILPWESVLRVWDVLLYE--GNRVMLFRTALALMELYGPALVTTK-DAGDAITLLQSLA 321 (630)
Q Consensus 254 ~f~~~WfltLFs~~LP~e~vlRIWD~ff~e--G~~~~LfrvaLALL~~~~~~LL~~~-d~~eii~lLq~l~ 321 (630)
+||.+|++.+|.++||-..++|||...++. -.-|.|| +|+||+-.+.+.++.-+ -.++++..+-++.
T Consensus 644 lfchrwlllcfkref~ea~airiweacwa~y~tdyfhlf-iclaiiaiy~ddvi~q~l~~demllhf~nla 713 (781)
T KOG2224|consen 644 LFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDYFHLF-ICLAIIAIYADDVIAQNLAPDEMLLHFGNLA 713 (781)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhhHHHHhhcCchhHHHhhhhhh
Confidence 899999999999999999999999999864 2334344 99999999998887543 4455555555554
No 13
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=250.96 Aligned_cols=240 Identities=33% Similarity=0.529 Sum_probs=203.9
Q ss_pred CCHHHHHHHHhcCCChhhHHHHHHHHhcCccccC----HHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCC
Q 006813 75 PWKEELESLVHGGVPKDLRGELWQAFVGVKARRT----ESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTF 150 (630)
Q Consensus 75 ~~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~~----~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTf 150 (630)
....++...+..|||..+|+.+|..+++.-.... ...|...+.... ..-..+| +|+.|||
T Consensus 133 ~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~-~d~~Rt~ 196 (397)
T KOG1102|consen 133 RRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRLQLDEPE---------------PHESEII-RDLSRTF 196 (397)
T ss_pred ccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHHhhccCC---------------CchhHHH-hhccCcC
Confidence 3445677778899999999999999998732222 222222211110 0024567 9999999
Q ss_pred CCCCCCCh---hhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhhccCcCChhHHHHHHhH
Q 006813 151 PAHPALNE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQ 227 (630)
Q Consensus 151 p~~~~F~~---~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~~ 227 (630)
|.+..|.. .++..|.+|+.+|+.++|++||||||..++++++.+++|++|||+++.+|..+-.+.|..+..+++...
T Consensus 197 ~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~~~~~~~~~~~~l~~~~ 276 (397)
T KOG1102|consen 197 PAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNYGLDLLSPGFSGLQRSF 276 (397)
T ss_pred cchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCchhhhhhhhhhhhhccchhcccccCCchhhhH
Confidence 99999975 678999999999999999999999999999999999999999999999999885556688889999999
Q ss_pred HHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcC
Q 006813 228 LVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTT 307 (630)
Q Consensus 228 ~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~LL~~ 307 (630)
..+..+++.+.|.++.|+...++...+|+.+||+|+|+..+|++.++||||+++.+|..+ ++++++++++...+.+++.
T Consensus 277 ~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i-~~~~~~~l~~~~~~~~~~~ 355 (397)
T KOG1102|consen 277 RQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSI-LFRFSLALLKHKADDLLDL 355 (397)
T ss_pred HHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHH-HHHHHHHHhhhhhHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999766 8999999999999999996
Q ss_pred CCHHHHHHHHHhccCCCCChHHHHH
Q 006813 308 KDAGDAITLLQSLAGSTFDSSQLVF 332 (630)
Q Consensus 308 ~d~~eii~lLq~l~~~~~D~~~Li~ 332 (630)
+++.++.+++......+|......
T Consensus 356 -~~e~~~~~l~~~~~~~~~~~~~~~ 379 (397)
T KOG1102|consen 356 -DFESLLSYLRVDLPKSYDSELSDK 379 (397)
T ss_pred -cHHHHHHHHhcccHhhcCccchhH
Confidence 599999999987766666554433
No 14
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.8e-24 Score=211.55 Aligned_cols=168 Identities=32% Similarity=0.599 Sum_probs=153.5
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhcCccc--cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCC
Q 006813 79 ELESLVHGGVPKDLRGELWQAFVGVKAR--RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPAL 156 (630)
Q Consensus 79 kLK~lir~GIP~~lR~~VW~~LLGv~~~--~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTfp~~~~F 156 (630)
+++-.|+.|||+.+|+..|..|.|+... .++..|..+....+. .++.+-|++|++|.||.|.+|
T Consensus 95 ~ir~rcrkgippslr~Raw~ylsGa~~~~~~np~~~~~~~~~pG~--------------p~t~e~i~kdl~rqfp~hemf 160 (267)
T KOG2221|consen 95 KIRPRCRKGIPPSLRGRAWRYLSGAPSPPPKNPVVFDELGPAPGD--------------PKTAEGIHKDLHRQFPFHEMF 160 (267)
T ss_pred cccchhhcCCCcccchhHHHhhcCCCCCCCCCcchhhhccCCCCC--------------CcchhhhccccccCCCccccc
Confidence 4555689999999999999999999764 457888887654432 346899999999999999999
Q ss_pred C---hhhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhhccCcCChhHHHHHHhHHHHHHH
Q 006813 157 N---EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEEL 233 (630)
Q Consensus 157 ~---~~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~~~vfe~L 233 (630)
- ..|+..|+|+|.+|..++|+.||||+-..|++++|+.|++++|||||+.++++|+++||.+....++.+-.++..|
T Consensus 161 ~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp~rdaf~~~vqicekylqgy~~sgleaiq~dg~il~~L 240 (267)
T KOG2221|consen 161 GSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMPARDAFWCFVQICEKYLQGYYSSGLEAIQNDGGILEGL 240 (267)
T ss_pred ccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcccHHHHHHHHHHHHHHHcccccccchhhhhcccHHHHHH
Confidence 5 3568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhChhhhhhhhhccccchhhhhhhh
Q 006813 234 IRERFPKLVHHLDYLGVQVTWISGPWF 260 (630)
Q Consensus 234 Lk~~~PeL~~HL~~lgi~~~~f~~~Wf 260 (630)
+++.+|-.|.||...++++.+|.+.||
T Consensus 241 lkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 241 LKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHhcCCCCCcccccCCCCHHHhhhccC
Confidence 999999999999999999999999998
No 15
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.8e-23 Score=223.55 Aligned_cols=203 Identities=23% Similarity=0.347 Sum_probs=163.5
Q ss_pred CCCchhhHHHHHhcCCCCCCCC-CCCChhh-HHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCC-------------
Q 006813 132 FGVPRKWKKQIEKDIPRTFPAH-PALNEDG-RDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP------------- 196 (630)
Q Consensus 132 ~~~~~k~~~qIekDl~RTfp~~-~~F~~~g-~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~------------- 196 (630)
++.+.+..+.|..|+.||||++ .+|+.++ +..|++||..|+.-||.+||-|||+.+.|+++++..
T Consensus 98 fF~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~ 177 (625)
T KOG1091|consen 98 FFRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESL 177 (625)
T ss_pred hcCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhh
Confidence 6677788899999999999999 7888655 789999999999999999999999999999987752
Q ss_pred -------hhH-----------HH--HHHHHhHHh----------------hc-------cCcCChhHHHHHHhHHHHHHH
Q 006813 197 -------EEN-----------AF--WTFVGIIDD----------------YF-------DGYYTEEMIEAQVDQLVFEEL 233 (630)
Q Consensus 197 -------Eed-----------AF--w~L~~Lm~~----------------~l-------~~yf~~~~~~l~~~~~vfe~L 233 (630)
|.+ ++ -+++.+|.. ++ .+-+.+..+.+......+.++
T Consensus 178 ~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~l 257 (625)
T KOG1091|consen 178 FDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHL 257 (625)
T ss_pred hhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhh
Confidence 222 22 233334321 00 001112334455556678999
Q ss_pred HHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHH-HHHhcCCchHHH-HHHHHHHHHhhhHhhcCCCHH
Q 006813 234 IRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWD-VLLYEGNRVMLF-RTALALMELYGPALVTTKDAG 311 (630)
Q Consensus 234 Lk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD-~ff~eG~~~~Lf-rvaLALL~~~~~~LL~~~d~~ 311 (630)
+.+.++.||.||.++||.|.+|.++|...||.++||+..++-||| +.|+.++...|. ++++++|.+.++.|+.....+
T Consensus 258 L~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~t 337 (625)
T KOG1091|consen 258 LAKVDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQT 337 (625)
T ss_pred hhhccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999 888888876443 588999999999999975555
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHh
Q 006813 312 DAITLLQSLAGSTFDSSQLVFTACM 336 (630)
Q Consensus 312 eii~lLq~l~~~~~D~~~Li~~A~~ 336 (630)
.+++|-+++. +.|++.+|..|..
T Consensus 338 -cL~~Lm~yP~-~~Dv~~~iekAl~ 360 (625)
T KOG1091|consen 338 -CLQYLMNYPE-IIDVDKFIEKALH 360 (625)
T ss_pred -HHHHHhcCCC-cCcHHHHHHHHHH
Confidence 8888888875 8899999999875
No 16
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.89 E-value=2.7e-22 Score=207.06 Aligned_cols=253 Identities=16% Similarity=0.201 Sum_probs=202.0
Q ss_pred CCHHHHHHHHhc--C-CChhhHHHHHHHHhcCccccCH-HHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCC
Q 006813 75 PWKEELESLVHG--G-VPKDLRGELWQAFVGVKARRTE-SYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTF 150 (630)
Q Consensus 75 ~~~ekLK~lir~--G-IP~~lR~~VW~~LLGv~~~~~~-~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTf 150 (630)
.+.+.|+.+-.+ | +.+++|+.||+.|+|......+ ..|-+.++.+. -..|+..|+.|+|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~~~~~~~~~q~hk-----------------d~nQV~LDv~RSl 108 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLDATSTLTPVQKHK-----------------DYNQVILDVERSL 108 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCcccccCChhhhCc-----------------ccceEEEehhhhh
Confidence 344455555432 3 4789999999999998765542 22222222221 2579999999997
Q ss_pred CCCC----CCCh-hhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhhccCcCChhHHHHHH
Q 006813 151 PAHP----ALNE-DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQV 225 (630)
Q Consensus 151 p~~~----~F~~-~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~ 225 (630)
...| .-.. .-++.|..++......||.+.|.||.|+||..||++++|.+|+-++..+-..++++|+.+++.+...
T Consensus 109 ~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~~~lrdfM~~Tld~t~~ 188 (395)
T KOG2595|consen 109 GRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVGELEALSLMEELSTLHLRDFMLPTLDFTVR 188 (395)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 2222 3367888888888899999999999999999999999999999999999988899999999999999
Q ss_pred hHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCC-hHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHh
Q 006813 226 DQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILP-WESVLRVWDVLLYEGNRVMLFRTALALMELYGPAL 304 (630)
Q Consensus 226 ~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP-~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~L 304 (630)
.+.++..+++..+|+||+.|.+-.+. .+|+.+|++|||+|.+. +..++|++|+|++..+-.. ..++.+++..++..|
T Consensus 189 qL~~i~~iIk~~nP~Ly~~l~~aevg-tlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~p-iyv~A~vvL~r~~eI 266 (395)
T KOG2595|consen 189 QLRLISPIIKEVNPELYQFLQSAEVG-TLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLP-IYVYAAVVLYRRSEI 266 (395)
T ss_pred HHHHHHHHHhhcChHHHHHHHhhccc-ceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchh-HHHHHHHhhhhHHHH
Confidence 89999999999999999999988875 58899999999999995 9999999999999988764 449999999999999
Q ss_pred hcCC-CHHHHHHHHHhccCCCCChHHHHHHHHhhcccCCHHHHH
Q 006813 305 VTTK-DAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQ 347 (630)
Q Consensus 305 L~~~-d~~eii~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~ 347 (630)
++|. |+.-+-.+|+.++ .....+++|..++..+.+.+...+.
T Consensus 267 l~~~~dms~~H~lLs~iP-q~lp~d~lik~s~~~i~~~~~t~~~ 309 (395)
T KOG2595|consen 267 LKCDCDMSLLHGLLSTIP-QDLPYDTLIKESVLLITRKPATLLA 309 (395)
T ss_pred HHHHhhhHHHHHHHHhCc-cccCHHHHHHHHHHHHhcCChhhhh
Confidence 9886 4443445566655 4678999999999888877766654
No 17
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.82 E-value=3.2e-20 Score=206.06 Aligned_cols=249 Identities=24% Similarity=0.363 Sum_probs=186.8
Q ss_pred HHHhcCCChhhHHHHHHHHhcCccccCHH-----------HHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCC
Q 006813 82 SLVHGGVPKDLRGELWQAFVGVKARRTES-----------YYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTF 150 (630)
Q Consensus 82 ~lir~GIP~~lR~~VW~~LLGv~~~~~~~-----------~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTf 150 (630)
..+.+|+-+.+|+.+|+.+.+........ .|.................... .......|.+|+.||.
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~--~~~~~~~i~~dv~rtD 249 (488)
T KOG2197|consen 172 RIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEG--YLERKSRIEKDVGRTD 249 (488)
T ss_pred eecccccccchhhhhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccc--hhhhhhhhhhhccccc
Confidence 66677887799999999999987643322 3444443333221111110101 2245678999999999
Q ss_pred CCCCCCCh-h--hHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcC-ChhHHHHHHHHhHHhhccCcCChhHHHHHHh
Q 006813 151 PAHPALNE-D--GRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-PEENAFWTFVGIIDDYFDGYYTEEMIEAQVD 226 (630)
Q Consensus 151 p~~~~F~~-~--g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~-~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~ 226 (630)
+.+.++.. . ....|..||.+|+.+++++||||||+++.++++.++ +|.+|||||+++|++..++|. .+..+++..
T Consensus 250 r~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~-~d~~~~~~Q 328 (488)
T KOG2197|consen 250 RSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFR-IDQSGMQTQ 328 (488)
T ss_pred hhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCc-cccccHHHH
Confidence 99988852 3 379999999999999999999999999999999987 678999999999999766664 456677777
Q ss_pred HHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhhhHhh
Q 006813 227 QLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRV-MLFRTALALMELYGPALV 305 (630)
Q Consensus 227 ~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~-~LfrvaLALL~~~~~~LL 305 (630)
...+..+++..+|.||.||+.++....+|+++|++.+|-++|.++.++++|.+++..-... +.++++.|++......|+
T Consensus 329 l~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~~~~~l~ 408 (488)
T KOG2197|consen 329 LAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNKDPQTLM 408 (488)
T ss_pred hhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhcchHHHH
Confidence 7778899999999999999999999999999999999999999999999999999753322 245699999998777777
Q ss_pred cCC-CHHHHHHHHHhccCCCCChHHHHHHH
Q 006813 306 TTK-DAGDAITLLQSLAGSTFDSSQLVFTA 334 (630)
Q Consensus 306 ~~~-d~~eii~lLq~l~~~~~D~~~Li~~A 334 (630)
... +..+++..+..+. ...|..-++..|
T Consensus 409 ~~~~~~~e~l~~i~~~~-~~~d~~~~~~~A 437 (488)
T KOG2197|consen 409 EQGKSFNEVLKHVNLLS-EKADVLWVLVRA 437 (488)
T ss_pred hcCccchhHHhhccccc-ccchhhhHHHHH
Confidence 543 4444444344332 233444443333
No 18
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.78 E-value=9.6e-19 Score=195.73 Aligned_cols=249 Identities=25% Similarity=0.338 Sum_probs=207.8
Q ss_pred CCHHHHHHHHhcCCChhhHHHHHHHHhcCccccC---HHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCC
Q 006813 75 PWKEELESLVHGGVPKDLRGELWQAFVGVKARRT---ESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFP 151 (630)
Q Consensus 75 ~~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~~---~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTfp 151 (630)
....+|+.++.+|||+..|-.+|+.|+....+.. .+.|.++.......+ .+.+...|.+|+.||+|
T Consensus 172 ~s~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s~~~E-----------k~~~~~~Irrdi~~~~~ 240 (948)
T KOG4436|consen 172 KSLHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCSSQQE-----------KELHIGIIRRDIERTYP 240 (948)
T ss_pred hchhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhcchhh-----------hhHHHHHHHHHhhccCc
Confidence 3346889999999999999999999998888774 445665544332211 12356799999999999
Q ss_pred CCCCCCh--h--------hHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhh-ccCcCChhH
Q 006813 152 AHPALNE--D--------GRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDY-FDGYYTEEM 220 (630)
Q Consensus 152 ~~~~F~~--~--------g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~-l~~yf~~~~ 220 (630)
.|.+|.+ . +++.|+++..+|....-++|||||-+++++++++.++++.+|..++.+|..+ ++..+.+.+
T Consensus 241 eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~~rl~~l~kpe~ 320 (948)
T KOG4436|consen 241 EHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMILYRLRELSKPEM 320 (948)
T ss_pred ceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHhhcccccCCccc
Confidence 9999953 2 4899999999999999999999999999999999999999999999999987 688899999
Q ss_pred HHHHHhHHHHHHHHHhhCh-hhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006813 221 IEAQVDQLVFEELIRERFP-KLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMEL 299 (630)
Q Consensus 221 ~~l~~~~~vfe~LLk~~~P-eL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~ 299 (630)
..+-..++.++.......| .++.|+...+++.++|...||++.|...||+...-|+.|+|.++|... .|+..+|++..
T Consensus 321 ~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk-~fr~~ia~~~~ 399 (948)
T KOG4436|consen 321 EPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLK-RFRDSIAYLHQ 399 (948)
T ss_pred chhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHH-HHhhhHHHHHH
Confidence 8888888899999999999 999999999999999999999999999999999999999999999877 78999999944
Q ss_pred hhhHhhcCCCHHHHHHHHHhccCCCC--ChHHHHHHHH
Q 006813 300 YGPALVTTKDAGDAITLLQSLAGSTF--DSSQLVFTAC 335 (630)
Q Consensus 300 ~~~~LL~~~d~~eii~lLq~l~~~~~--D~~~Li~~A~ 335 (630)
..+.=+...|+..+..+++.-....+ +++.+...|.
T Consensus 400 ~~d~~~~s~D~EG~~~~~qr~~s~~vggtp~k~~t~a~ 437 (948)
T KOG4436|consen 400 LRDIELESLDMEGMLSYFQRNRSNTVGGTPDKLRTAAW 437 (948)
T ss_pred HhhhhhhccCccccccchhhccccccCCCCchHHHHHH
Confidence 44444444688888888874433333 4555555554
No 19
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.3e-13 Score=140.52 Aligned_cols=269 Identities=22% Similarity=0.316 Sum_probs=197.7
Q ss_pred CCCCCCCHHHHHHHHhcCC---ChhhHHHHHHHHhcCcccc----CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHH
Q 006813 70 PEPYFPWKEELESLVHGGV---PKDLRGELWQAFVGVKARR----TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQI 142 (630)
Q Consensus 70 ~~~~~~~~ekLK~lir~GI---P~~lR~~VW~~LLGv~~~~----~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qI 142 (630)
.+-......+||.+.|.|. .+.+|++|++.|+.-.+.+ ....|.+++-+......+.-.+.. +-
T Consensus 25 kelsctelqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclplp--------ef- 95 (559)
T KOG2801|consen 25 KELSCTELQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLP--------EF- 95 (559)
T ss_pred cccchHhHHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCcccccch--------hh-
Confidence 3334455678999999996 7889999999998755533 346788887665432211111100 00
Q ss_pred HhcCCCCCCCCCCCChhhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcC-ChhHHHHHHHHhHHhh--ccCcCChh
Q 006813 143 EKDIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-PEENAFWTFVGIIDDY--FDGYYTEE 219 (630)
Q Consensus 143 ekDl~RTfp~~~~F~~~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~-~EedAFw~L~~Lm~~~--l~~yf~~~ 219 (630)
+.-|-....+++..|.-..+.||.+.+...|+|+||+.++.+++++|+|. +|.++|--.++++.-- -+.....+
T Consensus 96 ---vdntqvpsyclnargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqs 172 (559)
T KOG2801|consen 96 ---VDNTQVPSYCLNARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQS 172 (559)
T ss_pred ---cccCcCchhhhcCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhH
Confidence 11111112244566778999999999999999999999999999999985 8999998888886532 23455666
Q ss_pred HHHHHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006813 220 MIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMEL 299 (630)
Q Consensus 220 ~~~l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~ 299 (630)
...+...+..|..|+.++....++.+....-+.......|-.++|. ++|+-...|++|+|+.+|.++ +|++++|||+.
T Consensus 173 flafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlfg-elplcyfarvfdvflvegykv-lyrvalailkf 250 (559)
T KOG2801|consen 173 FLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFG-ELPLCYFARVFDVFLVEGYKV-LYRVALAILKF 250 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-cchHHHHHHHhhheeecchHH-HHHHHHHHHHH
Confidence 7778888889999999999999888876666666667789888885 699999999999999999998 99999999998
Q ss_pred hhhHh----hcCCC-HHHHHHHHHhccCCCCChHHHHHHHHhhcccCCHHHHHHHHHHhh
Q 006813 300 YGPAL----VTTKD-AGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHR 354 (630)
Q Consensus 300 ~~~~L----L~~~d-~~eii~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~ 354 (630)
+.+.- ++.++ ..++-.+.+.+.+ +..+++|+.+|+. +.-++.++|+.|.-.+.
T Consensus 251 fhkvragqplesdsvkqdirtfvrdiak-tvspekllekafa-irlfsrkeiqllqmane 308 (559)
T KOG2801|consen 251 FHKVRAGQPLESDSVKQDIRTFVRDIAK-TVSPEKLLEKAFA-IRLFSRKEIQLLQMANE 308 (559)
T ss_pred HHHhhcCCCCccchHHHHHHHHHHHHHh-hCCHHHHHHHHHH-HHHhhHHHHHHHHHhhH
Confidence 75432 33333 3566677777664 7889999999986 56677788876655443
No 20
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.56 E-value=2.5e-14 Score=152.17 Aligned_cols=231 Identities=19% Similarity=0.322 Sum_probs=171.3
Q ss_pred CCChhhHHHHHHHHhcCccccCH-HHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCCCh---hhHH
Q 006813 87 GVPKDLRGELWQAFVGVKARRTE-SYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNE---DGRD 162 (630)
Q Consensus 87 GIP~~lR~~VW~~LLGv~~~~~~-~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTfp~~~~F~~---~g~~ 162 (630)
|=|..+ |+.++|+.-...+ ..+..+..-. ...+|++|..|.-....--.+ +...
T Consensus 36 G~~~~~----W~~~L~V~~K~d~l~~wd~iydLp------------------~Q~~lr~DC~~~~d~l~n~ee~~v~vv~ 93 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKPNPLDDWDQIYDLP------------------NQCALRNDCRKLADGLKNKEEDKVPVVS 93 (669)
T ss_pred CCCHHH----HHHHhcccCCCCchhhHHHHhCCc------------------hhhHHHHHHHHHHhhcCCchhhccchhH
Confidence 456665 9999999765443 2333332111 145777777654322211111 1234
Q ss_pred HHHHHHHHHHhhCCCCCcccchhHH---HHHHhhcCChhHHHHHHHHhHHhhccCcCChhHHHHHHhHHHHHHHHHhhCh
Q 006813 163 SLRRLLLAYALHNPSVGYCQAMNFF---AGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFP 239 (630)
Q Consensus 163 ~L~rIL~aya~~nP~IGY~QGMn~I---aalLLl~~~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~~~vfe~LLk~~~P 239 (630)
.|..++.-|+. +.++.|......| -.++++-+|-.+.|-||.+++++|+|.-..+....++ .|+-||+.|+|
T Consensus 94 dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh----~FRLLlqYHdP 168 (669)
T KOG3636|consen 94 DLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFH----LFRLLLQYHDP 168 (669)
T ss_pred hhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccch----HHHHHHHhcCH
Confidence 67777776654 4577888877643 3444556799999999999999998876666665554 48999999999
Q ss_pred hhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcCC--CHHHHHHHH
Q 006813 240 KLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTK--DAGDAITLL 317 (630)
Q Consensus 240 eL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~LL~~~--d~~eii~lL 317 (630)
+|+.||....+.|.+|+..||-+||+.....+.+.-+||.||-.+..|++|+.+|.||..-++.||+.+ +.++++++|
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfL 248 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFL 248 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999889899999999999999765 678999999
Q ss_pred HhccCC--CCChHHHHHHHHhhcccCCHHH
Q 006813 318 QSLAGS--TFDSSQLVFTACMGYLTVTEAR 345 (630)
Q Consensus 318 q~l~~~--~~D~~~Li~~A~~~~~~i~~~~ 345 (630)
.+.+.. .-|+.++..-|.. |..-+|..
T Consensus 249 enmp~~L~~eDvpDffsLAqy-Y~~KTP~s 277 (669)
T KOG3636|consen 249 ENMPAQLSVEDVPDFFSLAQY-YSDKTPES 277 (669)
T ss_pred HcCchhcccccchhHHHHHHH-HhhcChHH
Confidence 987753 2367777766643 44444443
No 21
>PF14961 BROMI: Broad-minded protein
Probab=97.56 E-value=0.001 Score=79.88 Aligned_cols=187 Identities=16% Similarity=0.259 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhhCCCCCcccchhHH-HHHHhhcCC-hhHHHHHHHHhHHhh------ccCc----CChh-------HHH
Q 006813 162 DSLRRLLLAYALHNPSVGYCQAMNFF-AGLLLLLMP-EENAFWTFVGIIDDY------FDGY----YTEE-------MIE 222 (630)
Q Consensus 162 ~~L~rIL~aya~~nP~IGY~QGMn~I-aalLLl~~~-EedAFw~L~~Lm~~~------l~~y----f~~~-------~~~ 222 (630)
++-.+++..|..+++.-+| .|...+ +.++++... -+.+.-++.+|..-. .+.. +.+. .+-
T Consensus 1084 ~s~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~ 1162 (1296)
T PF14961_consen 1084 KSSLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPV 1162 (1296)
T ss_pred cchhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCch
Confidence 3444556666666666555 477754 445554443 444554444443321 1211 1111 122
Q ss_pred HHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 006813 223 AQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGP 302 (630)
Q Consensus 223 l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~ 302 (630)
....+..++.+|+...|.+|.-|.--|..+...|.+|+.-+|=+.|+|..++...=+.+..|+.+.+| +|+|+++..++
T Consensus 1163 ~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY-~~VailkHlq~ 1241 (1296)
T PF14961_consen 1163 YFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVY-ICVAILKHLQP 1241 (1296)
T ss_pred hhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceee-hhHHHHHHhhH
Confidence 23455679999999999999999999999999999999999999999999998888888899998554 99999999999
Q ss_pred HhhcCCCHHHHHHHHHhccCCCCChHHHHHHHHhhcccCCHHHHHHHHHHhhHHHHHHHH
Q 006813 303 ALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVE 362 (630)
Q Consensus 303 ~LL~~~d~~eii~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~~~e 362 (630)
.||+.....++..+|+.-+-.-|.+.+ +. .-+..|+.+||+.|+..|.
T Consensus 1242 ~ilq~~q~q~L~~flke~~l~gF~~~~-----~~-------~yM~~Le~~yR~~vL~~m~ 1289 (1296)
T PF14961_consen 1242 EILQHTQTQDLQVFLKEEALRGFRVSD-----YL-------EYMENLEQRYRPRVLTDMR 1289 (1296)
T ss_pred HHHHhhhhchHHHHhhhccccceeHHh-----HH-------HHHHHHHHHhHhHHHHHHH
Confidence 999866555566666543322333222 22 2357899999999999876
No 22
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.22 E-value=2.7e-05 Score=85.06 Aligned_cols=211 Identities=25% Similarity=0.331 Sum_probs=132.4
Q ss_pred HHHHHhcCCChhhHHHHHHHHhcCccc------------cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCC
Q 006813 80 LESLVHGGVPKDLRGELWQAFVGVKAR------------RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIP 147 (630)
Q Consensus 80 LK~lir~GIP~~lR~~VW~~LLGv~~~------------~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~ 147 (630)
+..-+++|+....|+.+|+...+-... .....|+..+...... -...|++|+.
T Consensus 551 l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~~---------------~~~~~~kd~e 615 (813)
T KOG1648|consen 551 LEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFRA---------------NLHRIDKDVE 615 (813)
T ss_pred HHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHhh---------------heeeecchhh
Confidence 345578999999999999999875321 1124566555444321 1467999999
Q ss_pred CCCCCCCCCCh-hhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCC-hh---HHHHHHHHhHHh-hccCcCChhHH
Q 006813 148 RTFPAHPALNE-DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMP-EE---NAFWTFVGIIDD-YFDGYYTEEMI 221 (630)
Q Consensus 148 RTfp~~~~F~~-~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~-Ee---dAFw~L~~Lm~~-~l~~yf~~~~~ 221 (630)
|+..+.-+|.+ ++.+. +++...|...|-+-||.|||.++.++++..+. |. ++|-. ..+.++ .++.+- ++.
T Consensus 616 ~~~~~~~~fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~-~~~~q~~~~~q~~--~~~ 691 (813)
T KOG1648|consen 616 RCDRNLMFFSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSL-LMLRQRGKFPQRP--GMS 691 (813)
T ss_pred hCcchheeecCCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcH-HHHHhcccCCCCC--Ccc
Confidence 99988888864 45566 89999999999999999999999999987763 22 34433 222222 122221 111
Q ss_pred HHHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcC-----CchHHHHHHHHH
Q 006813 222 EAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEG-----NRVMLFRTALAL 296 (630)
Q Consensus 222 ~l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG-----~~~~LfrvaLAL 296 (630)
..+..+ .+++..+| |-..++. ..-..++||+.-|.+.+..+-...+|.+++... ..+.+| ++++.
T Consensus 692 ---~~l~~~-r~~~v~~~-l~s~id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~-~g~~~ 761 (813)
T KOG1648|consen 692 ---KCLLNL-RLIQVVDP-LISDIDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIF-FGLAT 761 (813)
T ss_pred ---cccccc-cchhhhcc-hhcchhh----hhhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhh-hhhHH
Confidence 111111 24445555 2222221 123458999999999999999999999888642 123344 78887
Q ss_pred HHHhhhHhhcCC-CHHHHHHHHHhc
Q 006813 297 MELYGPALVTTK-DAGDAITLLQSL 320 (630)
Q Consensus 297 L~~~~~~LL~~~-d~~eii~lLq~l 320 (630)
-.++. .+...+ +..+++.+++..
T Consensus 762 ~~~~~-~~~t~~~~~t~~i~~~~~~ 785 (813)
T KOG1648|consen 762 TNYHD-VLITNNFDYTDMIKFFNEM 785 (813)
T ss_pred HhhHH-HHhhcccchHHHHHHHHHH
Confidence 44443 333322 666777776643
No 23
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.55 E-value=4.5 Score=44.73 Aligned_cols=63 Identities=38% Similarity=0.353 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHH----------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------HhhhHHHHH
Q 006813 444 LKVELCSLLEDKRSAVLRAEELE----------TALMEMVKQDNRRQLSARIEQLEQEVAELQQ------SLADKREQE 506 (630)
Q Consensus 444 l~~el~~lL~e~~~~~lr~~ele----------~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~ 506 (630)
|-.+-+-|=|..|..-+||+|.. -+.+|=++.-..+.|.+++.|||.|+++||- ++.||++-|
T Consensus 255 LvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee 333 (502)
T KOG0982|consen 255 LVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEE 333 (502)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555666777777777653 3677888888889999999999999999995 456666544
No 24
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.31 E-value=20 Score=42.81 Aligned_cols=71 Identities=24% Similarity=0.347 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHh---hHhhHHHhHHHHHHHHHHHHHHH
Q 006813 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRN---AEQDARAQRYAVNVLEEKYEKAM 552 (630)
Q Consensus 476 d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 552 (630)
+-.+.+..|..+||.|+..||.-|..|+||-..|-+-+ .+.|.+ -+.|+..=--|...||+|-...-
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~----------~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE 607 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL----------QELRKYEKESEKDTEVLMSALSAMQDKNQHLE 607 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55667888999999999999999999999866554333 334443 35688888888999999876655
Q ss_pred HHHH
Q 006813 553 ASVA 556 (630)
Q Consensus 553 ~~~~ 556 (630)
.+|+
T Consensus 608 ~sLs 611 (697)
T PF09726_consen 608 NSLS 611 (697)
T ss_pred Hhhh
Confidence 5554
No 25
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.38 E-value=7.4 Score=31.38 Aligned_cols=42 Identities=33% Similarity=0.547 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHH
Q 006813 479 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRY 539 (630)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (630)
.+|++||.||.++|.-||..+..-++ |-||...--|.-++.|
T Consensus 13 q~L~~kvdqLs~dv~~lr~~v~~ak~-------------------EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 13 QTLNSKVDQLSSDVNALRADVQAAKE-------------------EAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhhHhhc
Confidence 36778888888888888765543322 5666666667777776
No 26
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=77.43 E-value=92 Score=36.98 Aligned_cols=78 Identities=24% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 006813 444 LKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRI 522 (630)
Q Consensus 444 l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (630)
|..||-.|=+| |+.+..-=.|...|-.-==++.|++.++.+-+|......|++.|.+++++=...-.-|--.++.+..
T Consensus 476 L~~ELqqLReE-RdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 476 LSLELQQLREE-RDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44555444333 4433333245555555555678888888888888888888888888877655444444444554433
No 27
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.88 E-value=89 Score=37.44 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 509 MIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESML 569 (630)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (630)
|=.-+-++..|.|..||.-+.+|++...-|.-..--+.--|..|.+|+.|.-+..+-|.=|
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344677888899999999999999855444321123357889999999988887655544
No 28
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=72.01 E-value=69 Score=29.96 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=43.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 006813 473 VKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ 520 (630)
Q Consensus 473 ~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (630)
--.+...-|..+++.|+..+..|.+.+..+++|=..+.++|.++.+++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778899999999999999999999999999999999999988765
No 29
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.69 E-value=3.3 Score=40.72 Aligned_cols=31 Identities=48% Similarity=0.575 Sum_probs=25.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 467 TALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 467 ~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
+.--++.+.| |.|+|+.||+||++|++-|.+
T Consensus 180 ~~a~a~~s~d----learv~aLe~eva~L~~rld~ 210 (215)
T COG3132 180 TDAPAAASSD----LEARVEALEQEVAELRARLDS 210 (215)
T ss_pred ccCcccccch----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666 999999999999999998864
No 30
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=69.53 E-value=1.1e+02 Score=36.17 Aligned_cols=96 Identities=30% Similarity=0.420 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhh-------------H-HHHHHHHHHHHHHHHHHHHHhhh
Q 006813 436 DLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDN-------------R-RQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 436 ~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~-------------~-~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
-+++.+..|+.++|.|-+|+....-+-.+|+..|.++=.+-. . .+|.+.++.|..|+..|..-+..
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677789999999999999999999999999998643221 1 24555555565555555533322
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcH---HHhHhhHhh
Q 006813 502 KREQESAMIQVLMKVEQEQRITE---DARRNAEQD 533 (630)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 533 (630)
|-.+..+|-.|. -|||.++.| .+++..|+.
T Consensus 106 -qv~~ne~Ls~L~-~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 106 -QVENNEQLSRLN-QEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred -HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 222333333322 277777765 455555544
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=69.35 E-value=86 Score=39.39 Aligned_cols=113 Identities=26% Similarity=0.250 Sum_probs=70.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 006813 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQS-LADKREQESAMIQV 512 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 512 (630)
..+|++-..-++.++-++.+++|...-++...|.. -.+-+..++|+..-..+|++++|-+.. |+++ |+ .
T Consensus 632 i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~---~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~---e~----~ 701 (1317)
T KOG0612|consen 632 ISSLEETLKAGKKELLKVEELKRENQERISDSEKE---ALEIKLERKLKMLQNELEQENAEHHRLRLQDK---EA----Q 701 (1317)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HH----H
Confidence 44455555556666666666666665555555554 456677888888888899988888877 5554 22 2
Q ss_pred HHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 006813 513 LMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVA 556 (630)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (630)
+-.+++...=-.+||..||.++..----.+.|.--|-.+-.++-
T Consensus 702 ~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~ 745 (1317)
T KOG0612|consen 702 MKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN 745 (1317)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence 33444444444578988888776554455556665554443333
No 32
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=69.29 E-value=96 Score=32.86 Aligned_cols=119 Identities=24% Similarity=0.341 Sum_probs=75.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006813 435 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLM 514 (630)
Q Consensus 435 ~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (630)
-++|..+..+..|++.|..+|..+-+-.- --|..|.+.|..=-+-|+.+|..|.+=-+-..|-+
T Consensus 57 t~iQaeI~q~nlEielLkleKeTADltH~---------------~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~- 120 (277)
T PF15003_consen 57 TNIQAEIDQLNLEIELLKLEKETADLTHP---------------DYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPY- 120 (277)
T ss_pred HHHHHHHHhhhHHHHHHHhhcchHhhhCH---------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh-
Confidence 34556666678888888888888765432 23667778887777777777776655333322222
Q ss_pred HHHHhhhhcHHHhHhhHhhHHHhHHHHHHHH------HHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Q 006813 515 KVEQEQRITEDARRNAEQDARAQRYAVNVLE------EKYEKAMA-----------------SVAQMEKRAVMAESMLEA 571 (630)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 571 (630)
. .-.---+|.-|||++++|. ++-++.+. +|++|+-.+.=-|...|+
T Consensus 121 ---~--------qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~LetIrwip~~~~~~~~m~~aL~ki~~lvae~E~l~e~ 189 (277)
T PF15003_consen 121 ---C--------QENLPVEAQYHRYVVELLELAASFIEKLEEHLETIRWIPNFDENPSNMDKALAKIDALVAECEELAEQ 189 (277)
T ss_pred ---h--------hcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112235778999999987 33333333 566676666667788888
Q ss_pred Hhhhccccc
Q 006813 572 TLQYESGQA 580 (630)
Q Consensus 572 ~~~~~~~~~ 580 (630)
.+++...|.
T Consensus 190 ilkwRe~~k 198 (277)
T PF15003_consen 190 ILKWREQQK 198 (277)
T ss_pred HHHHHHHHH
Confidence 888775543
No 33
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=65.82 E-value=67 Score=33.92 Aligned_cols=73 Identities=27% Similarity=0.371 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006813 441 VVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQE---VAELQQSLADKREQESAMIQVLMKVE 517 (630)
Q Consensus 441 ~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (630)
|.||+..|-.+++ +.-..+.-+ ..++.++...|+|.++-+.||+. +.+..+.+++-+++..+|-.-|-++|
T Consensus 168 V~WLR~~L~Ei~E----a~e~~~~~~--~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 168 VDWLRSKLEEILE----AKEIYDQHE--TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577776555443 333333222 45566677777777665555554 44445556666677777777666666
Q ss_pred Hh
Q 006813 518 QE 519 (630)
Q Consensus 518 ~~ 519 (630)
.|
T Consensus 242 ~~ 243 (269)
T PF05278_consen 242 ME 243 (269)
T ss_pred HH
Confidence 54
No 34
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=65.54 E-value=19 Score=30.65 Aligned_cols=44 Identities=34% Similarity=0.529 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHH
Q 006813 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYA 540 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (630)
-+.|.|||+|||..|..+|- |+|- -=.|-||-.++-|.-+|+|.
T Consensus 34 vq~LnAkv~qLe~dv~a~~~---~~qA----------------Ak~eaarAn~rldn~a~s~~ 77 (78)
T COG4238 34 VQTLNAKVDQLENDVNAMRS---DVQA----------------AKDEAARANQRLDNQAQSYC 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHH----------------hHhHHHHHHHHHHHHHHHhc
Confidence 46789999999998877663 2221 11367888999999998884
No 35
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=63.74 E-value=11 Score=37.51 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=28.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006813 473 VKQDNRRQLSARIEQLEQEVAELQQSLADKREQESA 508 (630)
Q Consensus 473 ~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (630)
..+.-.++|++++-++|.|+..|||+|+-|+.--.-
T Consensus 41 LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~E 76 (208)
T KOG4010|consen 41 LSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAE 76 (208)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445588899999999999999999999765443
No 36
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=63.58 E-value=5 Score=45.76 Aligned_cols=42 Identities=19% Similarity=0.439 Sum_probs=31.7
Q ss_pred CCCC-CHHHHHHHHhcCCChhhHHHHHHHHhcCccccCHHHHH
Q 006813 72 PYFP-WKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQ 113 (630)
Q Consensus 72 ~~~~-~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~~~~~Y~ 113 (630)
+.+. +..-++.+..+||++.+|+++|.+|+|++.......+.
T Consensus 61 ~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~ 103 (488)
T KOG2197|consen 61 GRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEER 103 (488)
T ss_pred ccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHH
Confidence 3444 55667788889999999999999999998754443333
No 37
>PRK11637 AmiB activator; Provisional
Probab=63.35 E-value=1.2e+02 Score=33.98 Aligned_cols=41 Identities=17% Similarity=0.371 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 006813 480 QLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ 520 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (630)
.+..+++++++++.++++-+.+.+.+...+.+-|-.++.+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444444444444444433
No 38
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=62.55 E-value=3.8e+02 Score=33.22 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=4.8
Q ss_pred hhHHHHHHHHhc
Q 006813 91 DLRGELWQAFVG 102 (630)
Q Consensus 91 ~lR~~VW~~LLG 102 (630)
.-|..+-...+|
T Consensus 155 ~~~~~~~~~~~~ 166 (1179)
T TIGR02168 155 EERRAIFEEAAG 166 (1179)
T ss_pred HHHHHHHHHHcc
Confidence 334444334444
No 39
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=61.66 E-value=3e+02 Score=31.75 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHH
Q 006813 480 QLSARIEQLEQEVAELQQSLADKREQES----AMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASV 555 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (630)
..++.|.+|+.++..+|.-|.--++-+. +|--.-..++|=..-+|.|+. .+..-+--+..+.+-.|.+-+.+
T Consensus 334 ~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~----ea~~~~~E~~~~k~E~e~~ka~i 409 (522)
T PF05701_consen 334 EASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK----EAEEAKEEVEKAKEEAEQTKAAI 409 (522)
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999988888865544443 344444555555555666654 44455666777888899999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006813 556 AQMEKRAVMAESMLEATL 573 (630)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~ 573 (630)
..||.|...|--++||..
T Consensus 410 ~t~E~rL~aa~ke~eaaK 427 (522)
T PF05701_consen 410 KTAEERLEAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998864
No 40
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=61.50 E-value=3.5 Score=28.49 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.8
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHHHH
Q 006813 447 ELCSLLEDKRSAVLRAEELETALMEM 472 (630)
Q Consensus 447 el~~lL~e~~~~~lr~~ele~~l~~m 472 (630)
++|+..|.+.++.|.++||..++..|
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 78999999999999999999988754
No 41
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.65 E-value=1.4e+02 Score=27.72 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 006813 479 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (630)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (630)
+.|++.+-++|.|++.++.-++.-+.+...+-+=++++-.+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988888887777777776543
No 42
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=59.60 E-value=4.2e+02 Score=32.73 Aligned_cols=141 Identities=26% Similarity=0.257 Sum_probs=86.7
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHHHHhhhHHHH-----hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 006813 425 GLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVL-----RAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSL 499 (630)
Q Consensus 425 ~~~~~~~~~~~~~~~q~~~l~~el~~lL~e~~~~~l-----r~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~ 499 (630)
+++.+..+.+.+|..+.. .||-++-+|.-++.. --++.-..|++.+..-.+-|+.|--|.+|.|-.||++.+
T Consensus 1022 ~~~~d~~~r~~el~~rq~---~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l 1098 (1189)
T KOG1265|consen 1022 ALNSDNAGRVRELVNRQT---QELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKL 1098 (1189)
T ss_pred hccchhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444566555432 355555554444432 345667889999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHH--HHHHHHhhhhcHHHhHhhHhh-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 500 ADKREQESAMIQV--LMKVEQEQRITEDARRNAEQD-------ARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLE 570 (630)
Q Consensus 500 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (630)
..|. +|.+-.-- ==+.|+|..++|-++..-+.= |.+|.---.-|+++-.+-...|+++|+ +.-||.+-|
T Consensus 1099 ~kkr-~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~k-al~~e~~~~ 1176 (1189)
T KOG1265|consen 1099 DKKR-MEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEK-ALDAEAEQE 1176 (1189)
T ss_pred HHHH-HHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH
Confidence 6554 33322111 125677777777666543321 223333345577777777788888855 445554433
No 43
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=58.38 E-value=2.1e+02 Score=29.33 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=27.7
Q ss_pred hhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 529 NAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEA 571 (630)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (630)
.-|+....-+.++.-...||+++...|..+|.+.--||.-+++
T Consensus 96 ~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~ 138 (237)
T PF00261_consen 96 ELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA 138 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555556667777778887777777776666666655443
No 44
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=57.67 E-value=1.6e+02 Score=27.35 Aligned_cols=84 Identities=24% Similarity=0.270 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhh-------------hHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 435 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQD-------------NRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 435 ~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d-------------~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
|+.-++..-|+.+- .+-.+.+-.|..+..++++++.+= .|-.|.+-.++=+.+...|+-.+++
T Consensus 16 p~~~~~t~~Lk~ec----~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~E 91 (120)
T PF14931_consen 16 PEKADQTQELKEEC----KEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAE 91 (120)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444555444443 233445567888888888888743 2344555667778888888888998
Q ss_pred HHHH---HHHHHHHHHHHHHhhhh
Q 006813 502 KREQ---ESAMIQVLMKVEQEQRI 522 (630)
Q Consensus 502 ~~~~---~~~~~~~~~~~~~~~~~ 522 (630)
|+.+ =.+=.|-|++||+||+.
T Consensus 92 k~~eLERl~~E~~sL~kve~eQ~~ 115 (120)
T PF14931_consen 92 KKMELERLRSEYESLQKVEQEQNE 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8744 45667889999999974
No 45
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=57.49 E-value=1.5e+02 Score=26.77 Aligned_cols=113 Identities=23% Similarity=0.400 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006813 437 LQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKV 516 (630)
Q Consensus 437 ~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (630)
|.++.. +-.+|..+|++.+.++.+. .+ ..|+.++.+ -..|..++.++|+....+-..+..+ .+..-+.-++.
T Consensus 10 L~~~~~-~~~~L~~ll~~e~~~l~~~-d~-~~l~~~~~~--k~~l~~~l~~le~~r~~~~~~~~~~--~~~~~l~~~~~- 81 (143)
T PF05130_consen 10 LEEQIE-LLQELLELLEEEREALISG-DI-DELEELVEE--KQELLEELRELEKQRQQLLAKLGAE--PEEATLSELIE- 81 (143)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHTT-HH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTT----SCHHHHHHHHC-
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhC-CH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCc--cccccHHHHHh-
Confidence 333443 5568889999999888887 33 356666654 5567777777776666655555444 22333333332
Q ss_pred HHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 006813 517 EQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQA 580 (630)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (630)
...-++..|.+....+.++-...-+....+++.+.+-.+-.
T Consensus 82 -----------------------~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~~~l 122 (143)
T PF05130_consen 82 -----------------------EREELQALWRELRELLEELQELNERNQQLLEQALEFVQQLL 122 (143)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345555555666666666666666666666665554433
No 46
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.85 E-value=2.7e+02 Score=30.17 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=29.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 006813 470 MEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQR 521 (630)
Q Consensus 470 ~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (630)
..-|..+|+....+.-....+|...+++.+...+++...=.+.+.++|+|.+
T Consensus 122 l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~rr~~~~~~e~ee~ 173 (309)
T TIGR00570 122 IETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQ 173 (309)
T ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777666664444433333333444444444
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=55.55 E-value=3.9e+02 Score=31.15 Aligned_cols=170 Identities=18% Similarity=0.245 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 006813 442 VWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQR 521 (630)
Q Consensus 442 ~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (630)
+.|+..|+..--+-|.+.-....-.++|-. ..+....+|++|..|+..+.+.+..++.+-+ -||+=+-=|++..
T Consensus 335 aql~~qLad~~l~lke~~~q~~qEk~~l~~-----~~e~~k~~ie~L~~el~~~e~~lqEer~E~q-kL~~ql~ke~D~n 408 (546)
T PF07888_consen 335 AQLKLQLADASLELKEGRSQWAQEKQALQH-----SAEADKDEIEKLSRELQMLEEHLQEERMERQ-KLEKQLGKEKDCN 408 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh
Confidence 335555555555555555555555555542 2233345778888888777777766554333 3444333344433
Q ss_pred ---hcHHHhHhhHhhHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhccccccc---CCCcccccC
Q 006813 522 ---ITEDARRNAEQDARAQRYAV--NVLEEKYEKAMASVAQMEKRAVMA--ESMLEATLQYESGQAKA---VSSPRAVHN 591 (630)
Q Consensus 522 ---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~ 591 (630)
+.|--|...|--++.+.-.. .-|++.-.+.|.-+-++|.|.-|+ |.--||.+=.+..-.-+ .|+|-+
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--- 485 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKEAAALTEDATAASPPSCPADLS--- 485 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCccccccCCCCCcCCC---
Confidence 45555666665544332222 124444556777888888887664 22233333111111111 222222
Q ss_pred CCCCCCC----CcccccccccccccCCCCCCCc
Q 006813 592 QSSVDSP----KRRIGLFGLAWRDRNKGKPSNL 620 (630)
Q Consensus 592 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 620 (630)
+|--+.| ++++|..||.=.+-+-.-|.+.
T Consensus 486 ~s~de~p~~~~~~~l~~~~l~~~~~~~~~p~~p 518 (546)
T PF07888_consen 486 DSEDESPEDEQPQPLGHYSLCEQGQPGSLPPSP 518 (546)
T ss_pred CcccCCccccccCCCCCcCcccCCCCCCCCCCC
Confidence 3333334 3889998887665554444443
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.23 E-value=1.7e+02 Score=29.77 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 544 LEEKYEKAMASVAQMEKRAVMAESMLEAT 572 (630)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (630)
|.+.|.++-..|+...+.+-.+|..+++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777776666666665543
No 49
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.84 E-value=4.1e+02 Score=31.91 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006813 477 NRRQLSARIEQLEQEVAELQQSLADKREQ 505 (630)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (630)
....|.++..++++++++++....++--+
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~ 317 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPR 317 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHH
Confidence 34555666666666666666655554333
No 50
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=54.76 E-value=4.8e+02 Score=31.92 Aligned_cols=109 Identities=26% Similarity=0.364 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhHHHHhHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006813 446 VELCSLLEDKRSAVLRAEELETA----------------LMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAM 509 (630)
Q Consensus 446 ~el~~lL~e~~~~~lr~~ele~~----------------l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (630)
.+++.+.++.|-...-++- +.+ ..+-|++++-..+-++.-|-|+.++.-|..|++++.+..-
T Consensus 720 ~e~~e~~Ek~Ri~~~~ae~-e~~vk~k~~l~rm~~d~~~f~e~vk~~rqs~~~e~~~~~ea~leaer~rl~erk~~R~e- 797 (988)
T KOG2072|consen 720 RELYEAREKQRIEAAIAER-ESAVKDKKRLSRMYDDRDKFKEHVKGERQSEYEEKLKQFEARLEAERNRLAERKRARIE- 797 (988)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-
Confidence 4677777777766655543 333 3456788888888889999999999989888888776532
Q ss_pred HHHHHHHHHhh----hhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 510 IQVLMKVEQEQ----RITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAE 566 (630)
Q Consensus 510 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (630)
|+-| ++.|+.-+.+|..+.+++.-- +..--+......+||+|+-|-|
T Consensus 798 -------erk~~~~re~EEEr~Rr~EEe~~ae~~ee---~~e~akr~~~eRe~e~~~ak~e 848 (988)
T KOG2072|consen 798 -------ERKQAYYREIEEERARREEEEANAERQEE---AAERAKRTEEEREIENRVAKKE 848 (988)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 333444444554454443221 1111123344556667666655
No 51
>PRK09039 hypothetical protein; Validated
Probab=52.98 E-value=3.4e+02 Score=29.62 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHH
Q 006813 479 RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMAS 554 (630)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (630)
..+.++..+|++++++.+...++.+-|=...=|-+-.++...--.+.+=..+|+.-+.++--..-|+.+-+.|+|.
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777888888777777766554444444444444333333333333333333333344556666666655
No 52
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=52.77 E-value=3e+02 Score=31.05 Aligned_cols=91 Identities=25% Similarity=0.267 Sum_probs=67.9
Q ss_pred cHHHHhcCCCCCCcccccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHH
Q 006813 418 NLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSA-------RIEQLEQ 490 (630)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~-------~~~~~~~ 490 (630)
.+--+|+-+ +|...+++..|+..+-.|=....+-..--+++.+.+.+-..+- ++|.. -+.+|++
T Consensus 147 R~ai~~~~l-------~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~--~kl~~~~~E~kk~~~~l~~ 217 (420)
T COG4942 147 RLAIYYGAL-------NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQ--AKLAQLLEERKKTLAQLNS 217 (420)
T ss_pred HHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 445555555 4566788888888888888888888888888998888876543 33332 2457888
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006813 491 EVAELQQSLADKREQESAMIQVLMKVE 517 (630)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (630)
+++.-++-+..-+-+++..=+++-+.|
T Consensus 218 ~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 218 ELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888888888888888887777
No 53
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=52.71 E-value=30 Score=28.24 Aligned_cols=30 Identities=37% Similarity=0.553 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006813 479 RQLSARIEQLEQEVAELQQSLADKREQESA 508 (630)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (630)
.+|.++|..|++|+.-++..+..|+-.-.|
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999876654
No 54
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.60 E-value=1e+02 Score=35.05 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCCCCccc-ccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH
Q 006813 426 LSVNSELE-GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELET 467 (630)
Q Consensus 426 ~~~~~~~~-~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~ 467 (630)
...+.-.| +.+|--|+..+..|+-.|+.+|++-.-+++.|-.
T Consensus 52 iegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 52 IEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556 7788889999999999999999998888887743
No 55
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=49.31 E-value=6.7 Score=43.42 Aligned_cols=34 Identities=32% Similarity=0.719 Sum_probs=30.4
Q ss_pred CCcccchhHHHHHHhh-cCChhHHHHHHHHhHHhh
Q 006813 178 VGYCQAMNFFAGLLLL-LMPEENAFWTFVGIIDDY 211 (630)
Q Consensus 178 IGY~QGMn~IaalLLl-~~~EedAFw~L~~Lm~~~ 211 (630)
+|..|||+++++++|- +++|.++||||+++|.+.
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqna 600 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNA 600 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcce
Confidence 6888999999999875 679999999999999963
No 56
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.99 E-value=2e+02 Score=29.68 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 006813 477 NRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQ 520 (630)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (630)
-.++|.+.|.++++++++|.+-+.+-++-++.+.-+|.+|-.+.
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999999888888877777666666665443
No 57
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.67 E-value=5e+02 Score=30.71 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006813 445 KVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQ 518 (630)
Q Consensus 445 ~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (630)
+.+++.++++...-...-.++...|...-..+.-.+|..+++.++.++.+++..+...+++-...-.-+-+++.
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666555545556666777777777777766666555554444333334333
No 58
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=48.48 E-value=1.3e+02 Score=32.54 Aligned_cols=72 Identities=25% Similarity=0.361 Sum_probs=62.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006813 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQES 507 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (630)
...-+++|..|-.+++.|=...+.-...+|||-..|.++ .|+.++|.|.+..|...-+|...+|.+-||+=+
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s--ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS--KESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888899999998888888889999999999987 889999999999999999999999999988744
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=48.41 E-value=3e+02 Score=27.69 Aligned_cols=63 Identities=29% Similarity=0.451 Sum_probs=39.0
Q ss_pred HHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006813 448 LCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQV 512 (630)
Q Consensus 448 l~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (630)
+.+-|.+.....=.-++--.-+|.=+.+.|+ .|+.-++++++||.+|++-|.+ -+...+.|+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~-~L~epL~~a~~e~~eL~k~L~~-y~kdK~~L~~ 90 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENK-RLSEPLKKAEEEVEELRKQLKN-YEKDKQSLQN 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3344443333333333334445555566665 5889999999999999999987 3455554443
No 60
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.20 E-value=1.8e+02 Score=31.58 Aligned_cols=32 Identities=19% Similarity=0.507 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006813 482 SARIEQLEQEVAELQQSLADKREQESAMIQVL 513 (630)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (630)
...|+.|..++...+..|..|+..-..|++++
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888877776666666655
No 61
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=47.86 E-value=7e+02 Score=31.79 Aligned_cols=92 Identities=28% Similarity=0.377 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhh--hhHH----------HHHHHHHHHHHHHHHHHHHhhhHH
Q 006813 436 DLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQ--DNRR----------QLSARIEQLEQEVAELQQSLADKR 503 (630)
Q Consensus 436 ~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~--d~~~----------~l~~~~~~~~~~~~~~~~~~~~~~ 503 (630)
.+++++.-+...+-.+..+..+..-...+++..+.++=.+ +.++ .+..+.+++...+..+.+.+++..
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 750 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766666666666655422 1111 233555555556666666666655
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHh
Q 006813 504 EQESAMIQVLMKVEQEQRITEDAR 527 (630)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~ 527 (630)
+...-.-+.+..++.+..-.++..
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 751 EELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666665555544
No 62
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=46.04 E-value=3.5e+02 Score=27.83 Aligned_cols=124 Identities=27% Similarity=0.281 Sum_probs=83.6
Q ss_pred HHHHHHHHhhhHHHHhHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 006813 446 VELCSLLEDKRSAVLRAEELETALMEMVK---QDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRI 522 (630)
Q Consensus 446 ~el~~lL~e~~~~~lr~~ele~~l~~m~~---~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (630)
.+.-+|-.+...+..+.+.++.-=...+. .++=|++=.++.+||..+..+++.+..-.++...|==.++++|+ ||
T Consensus 52 a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~--Ki 129 (225)
T COG1842 52 ARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQ--KI 129 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 33333333344444444444443222222 34556667788899999999999998888888888777888765 44
Q ss_pred cHHHhHhhHhhHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006813 523 TEDARRNAEQDARAQRYAVNVLEEKYE---------KAMASVAQMEKRAVMAESMLEATLQ 574 (630)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (630)
++ ..+..++...|+++.--|++-. .|+.+|..||.|+-..|...++--+
T Consensus 130 ~e---~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~e 187 (225)
T COG1842 130 AE---LRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAE 187 (225)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33 3466777777887777777654 6899999999999888777666543
No 63
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=45.74 E-value=6.9e+02 Score=31.10 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006813 482 SARIEQLEQEVAELQQSLA 500 (630)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~ 500 (630)
..++.+++.+...+++-+.
T Consensus 300 ~~~~~~~~~~~~~~~~~l~ 318 (1164)
T TIGR02169 300 EAEIASLERSIAEKERELE 318 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 64
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=45.64 E-value=3.5 Score=45.74 Aligned_cols=108 Identities=23% Similarity=0.247 Sum_probs=75.6
Q ss_pred HHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhhccCcCChhHHHHHHhHHHHHHHHHhhChhhhhhhhh
Q 006813 168 LLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDY 247 (630)
Q Consensus 168 L~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~~~vfe~LLk~~~PeL~~HL~~ 247 (630)
|.+|.-+|++++|| +..+.+ -.+++...+.........-.........+.-..|+..
T Consensus 24 l~~~~~~~~~~~~~--~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (397)
T KOG1102|consen 24 LAAYEPYNPEVGYC--VLHITS---------------------KSDGFQSSNERKLTELRDSPESIPDLSQSKRPGHVDS 80 (397)
T ss_pred ccCCCccccccccc--hhhhhh---------------------cccccccCCcccccccccCcccccccccccccccccc
Confidence 88999999999999 555544 2234444444333333333344445556677778877
Q ss_pred ccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 006813 248 LGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELY 300 (630)
Q Consensus 248 lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~ 300 (630)
.+ ........|+.-.|.....+....++||.+..+|... +....-..++.+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (397)
T KOG1102|consen 81 SE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGEQE-LTALSSSWLKVI 131 (397)
T ss_pred cc-cccccccccccccccccccccccchhHHHHhhhhHHH-HHHHHHHhhhhc
Confidence 77 6778888999999999999999999999999999887 554444444443
No 65
>PRK11637 AmiB activator; Provisional
Probab=44.84 E-value=2.6e+02 Score=31.22 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhH
Q 006813 436 DLQEQVVWLKVELCSLLEDKRS 457 (630)
Q Consensus 436 ~~~~q~~~l~~el~~lL~e~~~ 457 (630)
++++++.-++.++-.+..+..+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~ 65 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQ 65 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5667776666666555544443
No 66
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=44.14 E-value=7.9e+02 Score=31.34 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=17.0
Q ss_pred hHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 527 RRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRA 562 (630)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (630)
+...+.+-...+.-...+...++++-..+.+++.-.
T Consensus 872 ~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 907 (1163)
T COG1196 872 KEELEDELKELEEEKEELEEELRELESELAELKEEI 907 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555544333
No 67
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=44.00 E-value=3.9e+02 Score=27.74 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006813 435 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (630)
Q Consensus 435 ~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (630)
..+++++..+..++.+.-.+...+.-++..|+..+-.. +..+..|.++...++++...|+..-.+.++.
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~a--eeea~~Le~k~~eaee~~~rL~~~~~~~~eE 76 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQA--EEEAEELEQKRQEAEEEKQRLEEEAEMQEEE 76 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888888888888777654 4467778888888888888887766555443
No 68
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.72 E-value=3.9e+02 Score=28.13 Aligned_cols=75 Identities=29% Similarity=0.442 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006813 438 QEQVVWLKVELCSLLEDKRSAVLRAEELETALMEM--VKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMK 515 (630)
Q Consensus 438 ~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m--~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (630)
.-++.-|..++..|-.. ...|+..|.++ ..+..+..+.+.|.+||.|+.++|.-++.....=+.++-|=|.
T Consensus 222 r~~~~~l~~el~~l~~~-------~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~ 294 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAK-------NASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLA 294 (312)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccc-------hhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444433 45566666544 4566777888999999999999998888776665666666566
Q ss_pred HHHh
Q 006813 516 VEQE 519 (630)
Q Consensus 516 ~~~~ 519 (630)
++.|
T Consensus 295 Ld~E 298 (312)
T PF00038_consen 295 LDAE 298 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.79 E-value=4.6e+02 Score=28.22 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=14.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006813 472 MVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (630)
Q Consensus 472 m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (630)
-|-++-=+.|.+++.++..++.+.|+.+.+.++|
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.57 E-value=1.8e+02 Score=29.48 Aligned_cols=17 Identities=35% Similarity=0.267 Sum_probs=8.7
Q ss_pred ccchHHHHHHHHHHHHH
Q 006813 434 GRDLQEQVVWLKVELCS 450 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~~ 450 (630)
+|.++.|+.-|+.+|-.
T Consensus 95 lp~le~el~~l~~~l~~ 111 (206)
T PRK10884 95 VPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555444444
No 71
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=41.42 E-value=16 Score=44.35 Aligned_cols=116 Identities=24% Similarity=0.313 Sum_probs=81.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH-------HHhhhhHHHHHHHH---HHHHHHHHHHHH-HhhhH
Q 006813 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALME-------MVKQDNRRQLSARI---EQLEQEVAELQQ-SLADK 502 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~-------m~~~d~~~~l~~~~---~~~~~~~~~~~~-~~~~~ 502 (630)
+..|+.-....+.+...|+++-++...|+||+|+.|-- +|....| |||+| ++.|.|++|+|- ++-|-
T Consensus 163 i~~lE~el~~~r~~c~~l~~~a~~~~rr~Ee~e~ql~~a~~~na~lvEen~r--lsa~~~w~~~vE~enae~rghl~~~~ 240 (1335)
T KOG3632|consen 163 IKNLETELNFFRTSCINLLEVAESNFRRFEEEESQLLTAPCPNALLVEENLR--LSALVSWSSPVESENAESRGHLCVDG 240 (1335)
T ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhccCcchhhhhhccc--cceeecccchhhhhhhhhhheeeccc
Confidence 55566666778888999999999999999999999864 3444333 56664 788999999984 44555
Q ss_pred HHHHHHH-----H-HHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHH
Q 006813 503 REQESAM-----I-QVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKA 551 (630)
Q Consensus 503 ~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (630)
||.-.+- + -+++-.||-.++.-.+--.--|++-.+--|.++||+|.++-
T Consensus 241 qeRd~~~~~~~~~~~~~l~~eq~L~~mae~a~rrqqlq~eh~qal~~l~~kqqEV 295 (1335)
T KOG3632|consen 241 QERDIVPGSYKCVEDIPLESEQNLSVMAETAHRRQQLQCEHIQALNELQVKQQEV 295 (1335)
T ss_pred eeeccccccccccccchhhHHHHHHHHHHHhhhccchhhhhHHHhhhcccCHHHh
Confidence 5543332 1 13455566666555444455678888888889999988764
No 72
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.40 E-value=5.6e+02 Score=29.85 Aligned_cols=132 Identities=21% Similarity=0.308 Sum_probs=56.6
Q ss_pred HhcCCCCCCccc-ccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 006813 422 MLSGLSVNSELE-GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQS-- 498 (630)
Q Consensus 422 ~~~~~~~~~~~~-~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~-- 498 (630)
++.++....-.+ +..++++++ .|...|+.-..|.-..+.--.-+. +.-..+.....+|..|+..|++.
T Consensus 271 ~l~~l~l~~~~~~~~~i~~~Id----~Lyd~lekE~~A~~~vek~~~~l~-----~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 271 LLEELDLDEAEEKNEEIQERID----QLYDILEREVKARKYVEKNSDTLP-----DFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHhcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 455555444444 556666665 333333333333322222222222 22233555566666666666665
Q ss_pred hhhHHHHHHHHH-HHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 499 LADKREQESAMI-QVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESML 569 (630)
Q Consensus 499 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (630)
|++.......=+ .-|-.++.+.+ ..+...+.+.-+...+++.|++....+.++++.-+....++
T Consensus 342 l~~~e~~~~~~lekeL~~Le~~~~-------~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l 406 (569)
T PRK04778 342 LNESELESVRQLEKQLESLEKQYD-------EITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEML 406 (569)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111111 11222222222 12333344444455666666666666666665544444333
No 73
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=40.99 E-value=6.2e+02 Score=29.23 Aligned_cols=54 Identities=26% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 511 QVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVM 564 (630)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (630)
|=|-++.+|...+-|++-.|...|..---++++-.++-+....-|..|-.-...
T Consensus 137 ~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 137 QELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999988888888888887777766666544443
No 74
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=40.66 E-value=5.8e+02 Score=30.66 Aligned_cols=47 Identities=28% Similarity=0.470 Sum_probs=26.5
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006813 447 ELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVL 513 (630)
Q Consensus 447 el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (630)
-.|.||...++..|. +.|-..+|.-+|-.||.+|. +++||++|||-=
T Consensus 314 KVFaLmVQLkaQele------------h~~~~~qL~~qVAsLQeev~--------sq~qEqaiLq~S 360 (739)
T PF07111_consen 314 KVFALMVQLKAQELE------------HRDSVKQLRGQVASLQEEVA--------SQQQEQAILQHS 360 (739)
T ss_pred HHHHHHHHhhHHHHH------------hhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 345555555554443 34444556666666666654 466777777643
No 75
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.51 E-value=6.4e+02 Score=29.23 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 006813 488 LEQEVAELQQSL 499 (630)
Q Consensus 488 ~~~~~~~~~~~~ 499 (630)
++++..+|++.+
T Consensus 316 ~~~~~~~l~~~~ 327 (582)
T PF09731_consen 316 FEREREELEEKY 327 (582)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 76
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.28 E-value=1.5e+02 Score=28.73 Aligned_cols=55 Identities=27% Similarity=0.419 Sum_probs=36.9
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 447 ELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 447 el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
++-.|=++...---....|+..|..+-..--..+|...|++|++|+.+|..-|..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444445567777777778888888888888888888887766554
No 77
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.80 E-value=8.8e+02 Score=30.97 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006813 437 LQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAM 509 (630)
Q Consensus 437 ~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (630)
.+.|..+|..|.-.+-.++ ..++.+-+...-..-.-+-.+.-+.++++++|+++..|+..++.|+-+|...
T Consensus 171 ~~a~~~~lqae~~~l~~~~--~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 171 AQAQLTALQAESAALKALV--DELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHH--HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777765553332 2222222222222223344566788999999999999999999998777665
No 78
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=38.69 E-value=3.3e+02 Score=30.15 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHHH----------------------HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 444 LKVELCSLLEDKRSAVLRAEELETALM----------------------EMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 444 l~~el~~lL~e~~~~~lr~~ele~~l~----------------------~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
|...+.+.++|-.+..-.-+.|+.|++ |.|+...-..|-..|.+|..-++.|++.|..
T Consensus 263 Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~ 342 (384)
T PF03148_consen 263 LEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDE 342 (384)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777776666777777764 5677777778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHH
Q 006813 502 KREQESAMIQVLMKVEQEQRITED 525 (630)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~ 525 (630)
-+..-+.+....+++|.+-.+-..
T Consensus 343 a~~~l~~L~~~~~~Le~di~~K~~ 366 (384)
T PF03148_consen 343 AEASLQKLERTRLRLEEDIAVKNN 366 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765443
No 79
>PRK11239 hypothetical protein; Provisional
Probab=38.55 E-value=43 Score=34.13 Aligned_cols=26 Identities=50% Similarity=0.569 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006813 479 RQLSARIEQLEQEVAELQQSLADKRE 504 (630)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 504 (630)
..|.++|..||+||++||..+..-..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988876544
No 80
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.13 E-value=93 Score=30.42 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006813 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMK 515 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (630)
..+|..++++|+.|+..|.+-++--+|-=.+|++++=|
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999998888888999988754
No 81
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.82 E-value=2.9e+02 Score=28.82 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=41.6
Q ss_pred cccHHHHhcCCCCCCcccccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 006813 416 AANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEV 492 (630)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~ 492 (630)
+..++++...++..--..+.|..-.+..||. +||+=|.+- +-+|++..+|. .+.+.+++|.++||.++.+|
T Consensus 120 s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~-vlK~RdqkQ---~d~E~l~E~l~--~rre~~~kLe~~ie~~~~~v 190 (240)
T cd07667 120 STALEELTEDMTEDFLPVLREYILYSESMKN-VLKKRDQVQ---AEYEAKLEAVA--LRKEERPKVPTDVEKCQDRV 190 (240)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544333335555555666665 555544432 56777888873 46666677777777777666
No 82
>PRK04863 mukB cell division protein MukB; Provisional
Probab=37.57 E-value=1.1e+03 Score=31.13 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhH----hhHHHhHHHHHHHHHHHHHHH
Q 006813 477 NRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAE----QDARAQRYAVNVLEEKYEKAM 552 (630)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 552 (630)
....+.++++.+++++.+++..+++.+.+-...=+-+...++...-.+.|+-.-- -|...+. -.+-++++-++..
T Consensus 377 eleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~-~LenF~aklee~e 455 (1486)
T PRK04863 377 QQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED-WLEEFQAKEQEAT 455 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHHHHHHH
Confidence 3445667777778888888777776555444444444555555544444443321 0111111 1223455556666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006813 553 ASVAQMEKRAVMAESMLEA 571 (630)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~ 571 (630)
..+..+|.+..+++.-++.
T Consensus 456 ~qL~elE~kL~~lea~leq 474 (1486)
T PRK04863 456 EELLSLEQKLSVAQAAHSQ 474 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777666543
No 83
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=37.44 E-value=1.3e+02 Score=34.94 Aligned_cols=67 Identities=25% Similarity=0.293 Sum_probs=42.7
Q ss_pred ccccHHHHhcCCCCCCcccccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006813 415 PAANLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAE 494 (630)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~ 494 (630)
+..+++......+.-+.+. .-.|+||++.-.+-.+. ||| --|.+|...|+++.+.+.|
T Consensus 61 ~~~~~~p~~~s~~~~s~~r----------~~~e~~RI~~sVs~EL~---ele---------~krqel~seI~~~n~kiEe 118 (907)
T KOG2264|consen 61 NIENLDPYDASCSGYSIGR----------ILREQKRILASVSLELT---ELE---------VKRQELNSEIEEINTKIEE 118 (907)
T ss_pred cccccCcccccccchhHHH----------HHHHHHHHHHHHHHHHH---HHH---------HHHHHHHhHHHHHHHHHHH
Confidence 3335555555555555544 22477888765543332 332 2477888889999999999
Q ss_pred HHHHhhhHH
Q 006813 495 LQQSLADKR 503 (630)
Q Consensus 495 ~~~~~~~~~ 503 (630)
|+|.+-.||
T Consensus 119 lk~~i~~~q 127 (907)
T KOG2264|consen 119 LKRLIPQKQ 127 (907)
T ss_pred HHHHHHHhH
Confidence 999887665
No 84
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=37.20 E-value=2.7e+02 Score=34.45 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=60.9
Q ss_pred ccCccccHHHHhcCCCCCCc---cc-ccchHHHHHHHHHHHHHHHH-------hhhHHHHhHHHHHHHHHHHHhhhhHHH
Q 006813 412 YKEPAANLDEMLSGLSVNSE---LE-GRDLQEQVVWLKVELCSLLE-------DKRSAVLRAEELETALMEMVKQDNRRQ 480 (630)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~q~~~l~~el~~lL~-------e~~~~~lr~~ele~~l~~m~~~d~~~~ 480 (630)
..++.+++.+.|+.-+--.. -| ++-|..|.+ ++-.|+- ++..++ ... ||.+|..|+.+-..+-
T Consensus 856 t~s~~~~lad~~~~qs~qln~p~ed~~~~l~~qQe----~~a~l~~sQ~el~~~l~~ql-~g~-le~~l~~~iEk~lks~ 929 (1283)
T KOG1916|consen 856 TSSNVANLADSFNEQSQQLNHPMEDLLPQLLAQQE----TMAQLMASQKELQRQLSNQL-TGP-LEVALGRMIEKSLKSN 929 (1283)
T ss_pred cccchHHHHHHHHHHHhhhcCChhhHHHHHHHHHH----HHHHHHHhHHHHHHHHHHhh-cch-HHHHHHHHHHHHHHhh
Confidence 35566666666664432222 22 555555544 3333332 222221 111 8999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH------------HHHHHHHHHHHHh
Q 006813 481 LSARIEQLEQEVAELQQSLADKREQE------------SAMIQVLMKVEQE 519 (630)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 519 (630)
-.|--..|+.++++=.+.+-|-|+|= ++|+---||+|=-
T Consensus 930 ~d~~~~rl~e~la~~e~~~r~~~~qi~q~ltq~~s~~~~~~~e~ti~~El~ 980 (1283)
T KOG1916|consen 930 ADALWARLQEELAKNEKALRDLQQQITQQLTQFLSKELNAMFEKTIKKELA 980 (1283)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666678888888888888888873 3455555666643
No 85
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=36.38 E-value=51 Score=32.23 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 006813 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESA 508 (630)
Q Consensus 476 d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (630)
.-+++|...+-++|.|+..|||+|+-|+-+=.-
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~e 61 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAE 61 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345667777778899999999999998766443
No 86
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.48 E-value=1.7e+02 Score=30.74 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHh--hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 484 RIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQ--DARAQRYAVNVLEEKYEKAMASVAQMEK 560 (630)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (630)
++.+|+.||+.|+.+|..|.. |-+|-+.+||+------.| =--.++--++-||.|-++...++++|++
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq---------~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQ---------LILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHH---------HHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777778888777776642 2356666666532111111 1234556678899999999999999984
No 87
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=34.46 E-value=3.9e+02 Score=25.26 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Q 006813 471 EMVKQDNRRQLSARIEQLEQEVAELQ 496 (630)
Q Consensus 471 ~m~~~d~~~~l~~~~~~~~~~~~~~~ 496 (630)
+-.|.+..++|++.+.+++.|+..|.
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLe 40 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLE 40 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688899999999999999998875
No 88
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.44 E-value=1.1e+03 Score=30.27 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=20.9
Q ss_pred CCCChHHHHHHHH---hhcccCCHHHHHHHHHHhhHHH
Q 006813 323 STFDSSQLVFTAC---MGYLTVTEARLQELREKHRPAV 357 (630)
Q Consensus 323 ~~~D~~~Li~~A~---~~~~~i~~~~L~~LR~k~~~~v 357 (630)
..-|++++-..|. ..-...++.+|+.|-.+.+..|
T Consensus 1487 ~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v 1524 (1758)
T KOG0994|consen 1487 PDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERV 1524 (1758)
T ss_pred CCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3446666544443 3335678889988877655443
No 89
>PRK02224 chromosome segregation protein; Provisional
Probab=34.19 E-value=9.4e+02 Score=29.30 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006813 475 QDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (630)
Q Consensus 475 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (630)
.+.+.+|+.+.++|+....+|++.++..+.+
T Consensus 306 ~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~ 336 (880)
T PRK02224 306 DADAEAVEARREELEDRDEELRDRLEECRVA 336 (880)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666555543
No 90
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=33.01 E-value=32 Score=26.66 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 478 RRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
-++|..+|-.||.||..||+.=.|
T Consensus 13 ~e~l~vrv~eLEeEV~~LrKINrd 36 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRKINRD 36 (48)
T ss_pred cchheeeHHHHHHHHHHHHHHhHH
Confidence 357889999999999999997555
No 91
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=31.72 E-value=3.1e+02 Score=24.48 Aligned_cols=59 Identities=32% Similarity=0.459 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhHHH-------------HhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006813 446 VELCSLLEDKRSAV-------------LRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKRE 504 (630)
Q Consensus 446 ~el~~lL~e~~~~~-------------lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 504 (630)
.+|-+|..+.+.-. +..+++..+-..=.+..-+.+|.+++..++.+-..|.+.+..+++
T Consensus 37 neLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 37 NELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36666666554433 577888888888888999999999999999999999888877654
No 92
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=30.93 E-value=26 Score=23.94 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.5
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHH
Q 006813 447 ELCSLLEDKRSAVLRAEELETALM 470 (630)
Q Consensus 447 el~~lL~e~~~~~lr~~ele~~l~ 470 (630)
++|+..|.++++.|.++||..+|.
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHH
Confidence 689999999999999999999886
No 93
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.25 E-value=2.7e+02 Score=24.12 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=18.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 472 MVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 472 m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
.|-.+--|+.-.|||.||+|-.++.+-..|
T Consensus 10 tva~~QLrafIerIERlEeEk~~i~~dikd 39 (85)
T COG3750 10 TVAAGQLRAFIERIERLEEEKKTIADDIKD 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666888888888777654444
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.81 E-value=5.9e+02 Score=25.59 Aligned_cols=85 Identities=28% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHH
Q 006813 478 RRQLSA---RIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMAS 554 (630)
Q Consensus 478 ~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (630)
+|-||| +|-+|..++.+++.-+.+-.--=.++=++-.|-|-...=.|+....--|--+.+.=-+.+|++.+-+....
T Consensus 4 ~rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~ 83 (194)
T PF15619_consen 4 QRVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQ 83 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 006813 555 VAQMEKRA 562 (630)
Q Consensus 555 ~~~~~~~~ 562 (630)
.-.+|++.
T Consensus 84 ~r~~~~kl 91 (194)
T PF15619_consen 84 ERELERKL 91 (194)
T ss_pred HHHHHHHH
No 95
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=29.50 E-value=7.5e+02 Score=26.72 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 478 RRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
-.+|.+++.+++.++++++....+
T Consensus 216 i~~L~~~l~~~~~~l~~l~~~~~~ 239 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRSITPE 239 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCC
Confidence 344455555555555555554444
No 96
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.48 E-value=6.4e+02 Score=25.92 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=8.9
Q ss_pred hhhHHHHhHHHHHHHHHHHHh
Q 006813 454 DKRSAVLRAEELETALMEMVK 474 (630)
Q Consensus 454 e~~~~~lr~~ele~~l~~m~~ 474 (630)
+..+.....+.|...+.+.+.
T Consensus 28 ~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443
No 97
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.20 E-value=7.1e+02 Score=30.94 Aligned_cols=98 Identities=27% Similarity=0.347 Sum_probs=54.9
Q ss_pred HHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHhhhhcHHHhHh
Q 006813 452 LEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ--ESAMIQVLMKVEQEQRITEDARRN 529 (630)
Q Consensus 452 L~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 529 (630)
|.|.+||.|-|||+++.|- |-.-.|..||-+||.+|.+|- ++.+-+|| |..==+++=-+|+ ...+--||.-
T Consensus 436 lkEQVDAAlGAE~MV~qLt-----dknlnlEekVklLeetv~dlE-alee~~EQL~Esn~ele~DLreE-ld~~~g~~ke 508 (1243)
T KOG0971|consen 436 LKEQVDAALGAEEMVEQLT-----DKNLNLEEKVKLLEETVGDLE-ALEEMNEQLQESNRELELDLREE-LDMAKGARKE 508 (1243)
T ss_pred HHHHHHHhhcHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHH
Confidence 5667788888888888774 455668889999999998885 34454444 3333233322221 1122223322
Q ss_pred hHh-hHHHhHHHH--HHHHHHHHHHHHHHH
Q 006813 530 AEQ-DARAQRYAV--NVLEEKYEKAMASVA 556 (630)
Q Consensus 530 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~ 556 (630)
+++ --|||..++ .+---||.+.|+-|.
T Consensus 509 l~~r~~aaqet~yDrdqTI~KfRelva~Lq 538 (1243)
T KOG0971|consen 509 LQKRVEAAQETVYDRDQTIKKFRELVAHLQ 538 (1243)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 222 223344333 333457877777764
No 98
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.07 E-value=4.8e+02 Score=24.29 Aligned_cols=72 Identities=28% Similarity=0.451 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006813 435 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQ-DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVL 513 (630)
Q Consensus 435 ~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (630)
.-++.++-.+-.|+.-|=++...-.-.-+++...|..+... |.-+.. .+++.+|++-+.+.+....++||.|
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~-------~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL-------KKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444333334444444433221 222233 3344444455555566667777766
No 99
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=29.06 E-value=5.1e+02 Score=29.99 Aligned_cols=74 Identities=20% Similarity=0.338 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHh---HHHHHHHHHHHHHHHHH
Q 006813 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQ---RYAVNVLEEKYEKAMAS 554 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 554 (630)
++++-|+|-.|-.||| ++.+..-.-=..-+-+..+-+|+--|..|.||..+|.-.+.- |++ -||+.||+-+.+
T Consensus 169 ~arm~aqi~~l~eEmS--~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~--~lq~l~Ee~l~a 244 (531)
T PF15450_consen 169 VARMQAQITKLGEEMS--LRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQ--KLQELTEERLRA 244 (531)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 6677899999999998 456655555566677788899999999999999999876432 332 366666666665
Q ss_pred H
Q 006813 555 V 555 (630)
Q Consensus 555 ~ 555 (630)
|
T Consensus 245 l 245 (531)
T PF15450_consen 245 L 245 (531)
T ss_pred H
Confidence 5
No 100
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=29.00 E-value=5.5e+02 Score=25.01 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=23.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006813 473 VKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (630)
Q Consensus 473 ~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (630)
+-..-++.|..+|++|+.++..|...+.+-.+|
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q 118 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQ 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334445678889999999998888655554443
No 101
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.98 E-value=1.1e+03 Score=30.07 Aligned_cols=64 Identities=27% Similarity=0.398 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHH
Q 006813 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVK------QDNRRQLSARIEQLEQEVAELQQS 498 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~------~d~~~~l~~~~~~~~~~~~~~~~~ 498 (630)
+.++++|++-|+.|+-.+=++... --+-++|-+-+|+|-. .|--+++-.++++|++++..+.-.
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~ 929 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVA 929 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 778899999888888887755444 4677888888887743 444455556666666665554433
No 102
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=28.62 E-value=50 Score=33.21 Aligned_cols=57 Identities=9% Similarity=0.116 Sum_probs=49.7
Q ss_pred cHHHHhcCCCCCCcccccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 006813 418 NLDEMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSA 483 (630)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~ 483 (630)
.|..+|....|..+.. + ++..+|+--|.+.++.+.|+||..||...+.|-.-++|+-
T Consensus 48 ~F~~i~~~~fp~gd~~------~---y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w 104 (193)
T KOG0044|consen 48 EFREIYASFFPDGDAS------K---YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKW 104 (193)
T ss_pred HHHHHHHHHCCCCCHH------H---HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhh
Confidence 5999999999944333 2 6779999999999999999999999999999999888884
No 103
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.56 E-value=9.6e+02 Score=27.33 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHh
Q 006813 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDAR 527 (630)
Q Consensus 476 d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (630)
+.+..|.++|++|+.++.++-.-|..-.++=..+-.-.-.++.|.+..+..+
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~ 409 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVT 409 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777766655444444433333333333333344444333333
No 104
>PF00601 Flu_NS2: Influenza non-structural protein (NS2); InterPro: IPR000968 The Influenza A virus belongs to the class of ssRNA negative-strand viruses. Nonstructural protein 2 (NS2) may play a role in promoting normal replication of the genomic RNAs by preventing the replication of short-length RNA species []. NS1 and NS2 proteins are produced from the same gene by alternative splicing.; GO: 0006405 RNA export from nucleus, 0042025 host cell nucleus; PDB: 1PD3_B.
Probab=27.00 E-value=1.7e+02 Score=26.00 Aligned_cols=48 Identities=33% Similarity=0.435 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHH--HHHHHHHHHhhhh
Q 006813 475 QDNRRQLSARIEQLEQEVAELQQSLA---DKREQESAM--IQVLMKVEQEQRI 522 (630)
Q Consensus 475 ~d~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~ 522 (630)
+--|+||+.|-|...--+.+.|-.|. +--+|=.-| ||.|+.||||-++
T Consensus 36 ~~wreqL~qkfe~IrwlI~e~r~~l~~tensf~qItfmqaLqlLlEve~eirt 88 (94)
T PF00601_consen 36 GKWREQLGQKFEEIRWLIEEHRHRLKITENSFEQITFMQALQLLLEVEQEIRT 88 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHC----TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999988888777777776653 455665544 8999999998654
No 105
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=26.85 E-value=9.4e+02 Score=29.43 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHH
Q 006813 484 RIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKY 548 (630)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (630)
++..+..|.+-|..+|..|-.-=...---.-+.|.|.+..-----++|.+-+.-||-++|+++..
T Consensus 100 ~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 100 RLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555553332211111112223444444444444466777777777777777654
No 106
>PRK15396 murein lipoprotein; Provisional
Probab=26.47 E-value=2e+02 Score=24.86 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 477 NRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
--.+|+++|.+|..++..+.+...+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~ 50 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNA 50 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544443
No 107
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.14 E-value=4.5e+02 Score=23.02 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 006813 480 QLSARIEQLEQEVAEL 495 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~ 495 (630)
.|.++.++++..++.|
T Consensus 76 ~l~~q~~~l~~~l~~l 91 (127)
T smart00502 76 VLEQQLESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 108
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.02 E-value=2.7e+02 Score=33.08 Aligned_cols=41 Identities=32% Similarity=0.513 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHH
Q 006813 478 RRQLSARIEQLEQEVAELQQSLAD----KREQESAMIQVLMKVEQ 518 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 518 (630)
|++|-++||+|..++.++++-+.. --.||.++-|++..+.+
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~ 125 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISD 125 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988876653 34567777777766654
No 109
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.83 E-value=4.3e+02 Score=31.52 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006813 436 DLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMK 515 (630)
Q Consensus 436 ~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (630)
..+.|+.-+..++-++..+.-......+.+... -++.-+++++|+.+||.++++.+... .+=+.++|.|.|
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~-----~~~~~~~~~~~l~~le~~l~~~~~~~----~~L~~~~~~l~~ 413 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRVKTEQ-----AQASVHQLDSQFAQLDGKLADAQSAQ----QALEQQYQDLSR 413 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 345566667778887777644444433333222 34566788889999998888865432 232333465544
No 110
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=25.67 E-value=8.7e+02 Score=26.23 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006813 549 EKAMASVAQMEKRAVMAESMLEA 571 (630)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~ 571 (630)
.++-+.+++++.+.--++.-|+.
T Consensus 249 ~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 249 TEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555445544444
No 111
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=25.64 E-value=2e+02 Score=25.35 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006813 475 QDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVL 513 (630)
Q Consensus 475 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (630)
+...++|..++..|.+|+..|+.-|.-..+..+-+|.+|
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556788999999999999999998887777776666554
No 112
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.61 E-value=1.2e+03 Score=30.52 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHHhcC--C---ChhhHHHHHHHHhc
Q 006813 71 EPYFPWKEELESLVHGG--V---PKDLRGELWQAFVG 102 (630)
Q Consensus 71 ~~~~~~~ekLK~lir~G--I---P~~lR~~VW~~LLG 102 (630)
.+.+-.+.+|+..+..| + +..+|..|-..|.|
T Consensus 139 ~~~plt~~~l~~~l~~~~~~~~~~~~Yr~~v~~~lfG 175 (1353)
T TIGR02680 139 AGIPLTRDRLKEALGDGGEVFDTATDYRRAVDEELFG 175 (1353)
T ss_pred CCccCCHHHHHHHhCCCCeEEecHHHHHHHHHHHhcC
Confidence 46777788898877543 3 34588888888877
No 113
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.42 E-value=1.5e+03 Score=28.79 Aligned_cols=124 Identities=21% Similarity=0.258 Sum_probs=78.4
Q ss_pred ccchHHHHHHHHHHHH-HHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006813 434 GRDLQEQVVWLKVELC-SLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQV 512 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~-~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (630)
+.++.+++..|+.++| ..+.++..++.+.++...-. ++---.|..+++.....+.++|+-+++++.|.+...
T Consensus 257 ~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~-----qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~-- 329 (1074)
T KOG0250|consen 257 LEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKK-----QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELK-- 329 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--
Confidence 5566677778888876 45677777776666654433 333457899999999999999999999998876532
Q ss_pred HHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 006813 513 LMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAM-------ASVAQMEKRAVMAESML 569 (630)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 569 (630)
-|++ +...=--.|-+|.-+-|-.++-++++|-.+- ..+..|||...=++-++
T Consensus 330 ---~e~~--~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 330 ---DEVD--AQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred ---Hhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1111111233455555666666666665443 34455666666655555
No 114
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.06 E-value=1.6e+03 Score=29.21 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006813 545 EEKYEKAMASVAQMEKRAVMAESMLEATLQ 574 (630)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (630)
+.++++...-+.+.+.|+-.++.-+++++.
T Consensus 360 ~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~ 389 (1353)
T TIGR02680 360 ESRLEEERRRLDEEAGRLDDAERELRAARE 389 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777776666654
No 115
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.97 E-value=3.7e+02 Score=31.52 Aligned_cols=45 Identities=33% Similarity=0.416 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHh
Q 006813 480 QLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQ 537 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (630)
+|.+.-|+||+|..+-++- .=.|.|+|+|.-|+|++.-|.=.|+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (567)
T PLN03086 4 ELRRAREKLEREQRERKQR-------------AKLKLERERKAKEEAAKQREAIEAAQ 48 (567)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776654433 34567778888776665555444444
No 116
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=24.77 E-value=2.1e+02 Score=30.95 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006813 540 AVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYE 576 (630)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (630)
....+.+.+++|...+..++++..-++.....+++|=
T Consensus 310 f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yf 346 (370)
T PF02181_consen 310 FKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYF 346 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999999999997
No 117
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=24.45 E-value=7.9e+02 Score=29.96 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHhhhhHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHh---hHhhHHHhHHHHHHHH
Q 006813 472 MVKQDNRRQL---SARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRN---AEQDARAQRYAVNVLE 545 (630)
Q Consensus 472 m~~~d~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 545 (630)
||-.+..+++ .|++|+-|.||.+||--|+|-|.-=-+-----+.--|--.--|.||.. +|--|.-----..-++
T Consensus 369 ~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~ 448 (1480)
T COG3096 369 EVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWLETFQ 448 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006813 546 EKYEKAMASVAQMEKRAVMAE 566 (630)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~ 566 (630)
-+-|.+...|-++|.+.-|++
T Consensus 449 A~~e~~Te~lL~Le~kms~s~ 469 (1480)
T COG3096 449 AKEEEATEKLLSLEQKMSMAQ 469 (1480)
T ss_pred HhHHHHHHHHHHHHHhccHHH
No 118
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=24.35 E-value=1.2e+03 Score=27.23 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=75.1
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhH----------HHHHHHHHHHH---HHHHHHHHHh
Q 006813 433 EGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR----------RQLSARIEQLE---QEVAELQQSL 499 (630)
Q Consensus 433 ~~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~----------~~l~~~~~~~~---~~~~~~~~~~ 499 (630)
.++++++-...|..+-|.|+-| .+--++=|..+..||-+..| +.|+.|+++|- .|.+.|--.|
T Consensus 167 kLk~~~een~~lr~k~~llk~E----t~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql 242 (596)
T KOG4360|consen 167 KLKPLEEENTQLRSKAMLLKTE----TLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL 242 (596)
T ss_pred hcCChHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777888998887654 67788888999988877654 34566666554 3555666677
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhc--HHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 500 ADKREQESAMIQVLMKVEQEQRIT--EDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEK 560 (630)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (630)
.|+|+-+.+ +|||-|.... -.+.-.-+|+-|. -+.||+||-+.|+-+++-|.
T Consensus 243 ~d~qkk~k~-----~~~Ekeel~~~Lq~~~da~~ql~aE----~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 243 VDLQKKIKY-----LRHEKEELDEHLQAYKDAQRQLTAE----LEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HhhHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 888887765 3555553321 1111122333333 35799999999988877654
No 119
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.33 E-value=9.1e+02 Score=25.99 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006813 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQ 511 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (630)
..++..+++.|++|..++.+-|..-+.++....+
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~ 78 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQ 78 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444443333333
No 120
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=24.01 E-value=1.2e+03 Score=27.23 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHH-----------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006813 434 GRDLQEQVVWLKVELCSLLEDKRSAVL-----------RAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADK 502 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~~lL~e~~~~~l-----------r~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~ 502 (630)
...+...+.-++.|+|..++++.+..+ +-+++...+.++.+.+....+..++.....++..|++-|+..
T Consensus 16 I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~ 95 (593)
T PF06248_consen 16 ISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEEN 95 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677888877777766433 334444444445444445556666666666777776666554
Q ss_pred H
Q 006813 503 R 503 (630)
Q Consensus 503 ~ 503 (630)
+
T Consensus 96 ~ 96 (593)
T PF06248_consen 96 E 96 (593)
T ss_pred H
Confidence 3
No 121
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.72 E-value=9.5e+02 Score=25.95 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 006813 555 VAQMEKRAVMAESMLE 570 (630)
Q Consensus 555 ~~~~~~~~~~~~~~~~ 570 (630)
+++++.+.--++.-++
T Consensus 248 l~~~~~~l~~~~~~l~ 263 (423)
T TIGR01843 248 LTEAQARLAELRERLN 263 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 122
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.50 E-value=9.6e+02 Score=26.04 Aligned_cols=80 Identities=29% Similarity=0.408 Sum_probs=51.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHH
Q 006813 472 MVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKA 551 (630)
Q Consensus 472 m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (630)
-..+|+-..+++-|..|-+||+.||+.|..-+-+..+=.+.. ++-|..+.+.-++ .|| +...-.|.-|+.
T Consensus 218 ~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~--~~eek~ireEN~r-------Lqr-~L~~E~erreal 287 (310)
T PF09755_consen 218 SEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQY--LQEEKEIREENRR-------LQR-KLQREVERREAL 287 (310)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------HHH-HHHHHHHHHHHH
Confidence 347888999999999999999999999986655444322222 3334445444333 333 344445566666
Q ss_pred HHHHHHHHHH
Q 006813 552 MASVAQMEKR 561 (630)
Q Consensus 552 ~~~~~~~~~~ 561 (630)
-..|+++|--
T Consensus 288 ~R~lsesEss 297 (310)
T PF09755_consen 288 CRHLSESESS 297 (310)
T ss_pred HHHHHHHHHH
Confidence 6777776643
No 123
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=23.46 E-value=41 Score=22.26 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=19.4
Q ss_pred HHHHHHHhhhHHHHhHHHHHH
Q 006813 447 ELCSLLEDKRSAVLRAEELET 467 (630)
Q Consensus 447 el~~lL~e~~~~~lr~~ele~ 467 (630)
..|+.+|-++++.|..+||..
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 579999999999999999987
No 124
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.46 E-value=3.2e+02 Score=29.97 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006813 467 TALMEMVKQDNRRQLSARIEQLEQEVAELQQS 498 (630)
Q Consensus 467 ~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~ 498 (630)
+.++..|..+.|+....++|++-+|.++|++.
T Consensus 209 asvisa~~eklR~r~eeeme~~~aeq~slkRt 240 (365)
T KOG2391|consen 209 ASVISAVREKLRRRREEEMERLQAEQESLKRT 240 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555555555555553
No 125
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.30 E-value=5.3e+02 Score=22.86 Aligned_cols=74 Identities=24% Similarity=0.308 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHH-------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 435 RDLQEQVVWLKVELCSLLEDKRSAVLRAEELET-------------ALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 435 ~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~-------------~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
.++++|..-|...+-.|--+.+....--+||+. +|++.=+.+....|..+++.++.++..+...+.+
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555555555566653 4556667788889999999999999999988888
Q ss_pred HHHHHHH
Q 006813 502 KREQESA 508 (630)
Q Consensus 502 ~~~~~~~ 508 (630)
.+.+=..
T Consensus 89 l~~~~~e 95 (105)
T cd00632 89 LQEKLKE 95 (105)
T ss_pred HHHHHHH
Confidence 8776443
No 126
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=23.29 E-value=1.2e+03 Score=26.99 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.5
Q ss_pred HHHHhcCC
Q 006813 419 LDEMLSGL 426 (630)
Q Consensus 419 ~~~~~~~~ 426 (630)
+..+|.++
T Consensus 228 l~~~~~~l 235 (582)
T PF09731_consen 228 LVSIFNDL 235 (582)
T ss_pred HHHhccch
Confidence 34444444
No 127
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=23.24 E-value=3.8e+02 Score=24.65 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=20.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 006813 472 MVKQDNRRQLSARIEQLEQEVAELQQ 497 (630)
Q Consensus 472 m~~~d~~~~l~~~~~~~~~~~~~~~~ 497 (630)
++.++--..|++||.+||+.+.+|+.
T Consensus 92 ~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 92 IPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555567899999999999998864
No 128
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.20 E-value=3.7e+02 Score=23.48 Aligned_cols=60 Identities=27% Similarity=0.229 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006813 443 WLKVELCSLLEDKRSAVLRAEELETALMEMVKQD---------NRRQLSARIEQLEQEVAELQQSLADK 502 (630)
Q Consensus 443 ~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d---------~~~~l~~~~~~~~~~~~~~~~~~~~~ 502 (630)
-|..|..+|=.+.....--...|+.||+-....- ...+|=+.|..||.||.-|.+-+.+-
T Consensus 12 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 12 ALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666667778888887754433 67788888888888888887766654
No 129
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=23.14 E-value=55 Score=26.19 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCC
Q 006813 230 FEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILP 269 (630)
Q Consensus 230 fe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP 269 (630)
|..+--++.|+.-..|++.||+.++-.++=|++||+++..
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM~ 45 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVMN 45 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHHH
Confidence 5666778999999999999999999999999999987643
No 130
>PF13514 AAA_27: AAA domain
Probab=22.84 E-value=1.3e+03 Score=29.17 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=4.3
Q ss_pred hHHHHHHH
Q 006813 92 LRGELWQA 99 (630)
Q Consensus 92 lR~~VW~~ 99 (630)
.|-..|..
T Consensus 510 ~Rd~~W~~ 517 (1111)
T PF13514_consen 510 RRDAAWQL 517 (1111)
T ss_pred HHHHHhcc
Confidence 44456655
No 131
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=22.82 E-value=4.2e+02 Score=25.67 Aligned_cols=10 Identities=40% Similarity=0.537 Sum_probs=6.8
Q ss_pred hHHHHHHHHH
Q 006813 477 NRRQLSARIE 486 (630)
Q Consensus 477 ~~~~l~~~~~ 486 (630)
+|.+++++|.
T Consensus 117 ~R~~i~~~i~ 126 (196)
T cd03401 117 QREEVSALIR 126 (196)
T ss_pred hHHHHHHHHH
Confidence 4777777765
No 132
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=22.18 E-value=1.2e+03 Score=26.71 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006813 436 DLQEQVVWLKVELCSLLEDKRSAVLRAEEL----ETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQ 511 (630)
Q Consensus 436 ~~~~q~~~l~~el~~lL~e~~~~~lr~~el----e~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (630)
.+..|...|++++-++=.|.+.-...-+++ ...+ -++...++....+++.|...+.+|..++.. +++.+...
T Consensus 106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~~sL~ekl~lld~al~~--~~~~~~~~ 181 (511)
T PF09787_consen 106 SLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRIL--SDESTVSRLQNGAPRSLQEKLSLLDEALKR--EDGNAITA 181 (511)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--chhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCccHHHH
Confidence 344477778887755555544444443443 1111 123344555555557788778888777754 45566666
Q ss_pred HHHHHHHhhhhcHHHhHhhHhhHHHhHHH
Q 006813 512 VLMKVEQEQRITEDARRNAEQDARAQRYA 540 (630)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (630)
|+.=+..-.+..-.-+..+++=.|...|+
T Consensus 182 ~~~fl~rtl~~e~~~~~L~~~~~A~~~~~ 210 (511)
T PF09787_consen 182 VVEFLKRTLKKEIERQELEERPKALRHYI 210 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444333333344333333343
No 133
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.12 E-value=3e+02 Score=24.34 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 006813 478 RRQLSARIEQLEQEVAELQQSLA 500 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~ 500 (630)
...|..+.++|++++.+|++..+
T Consensus 73 ~~~l~~~~~~l~~~i~~l~~~~~ 95 (102)
T cd04789 73 RSLLLERLSSLAEQIARKQQARD 95 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888877653
No 134
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=21.92 E-value=2e+02 Score=31.94 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=48.5
Q ss_pred HHH----HHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 006813 442 VWL----KVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSL 499 (630)
Q Consensus 442 ~~l----~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~ 499 (630)
.|. |.=++-.+=..|=+-.+.+|...+|-..++. .-.-=.+|+|-||+||-+|||-|
T Consensus 15 ~wyl~tsKlAlAlAIIrsKPpg~s~ReytE~La~~l~~-qd~~WK~kae~LE~EvLqlrQeL 75 (375)
T PF13971_consen 15 SWYLKTSKLALALAIIRSKPPGKSSREYTEHLAKRLSE-QDESWKSKAEALEAEVLQLRQEL 75 (375)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 677 8888888888888899999999999988876 33455689999999999999987
No 135
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=21.68 E-value=9.2e+02 Score=26.04 Aligned_cols=15 Identities=7% Similarity=0.051 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 006813 546 EKYEKAMASVAQMEK 560 (630)
Q Consensus 546 ~~~~~~~~~~~~~~~ 560 (630)
.+++.+.+.+++.+.
T Consensus 158 ~~~~~~~~~l~~~~~ 172 (370)
T PRK11578 158 AQIGTIDAQIKRNQA 172 (370)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 136
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=21.42 E-value=4.4e+02 Score=28.30 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---------hhhhcHHHhHhhHhhHHHhHHHHHHHHHHH
Q 006813 489 EQEVAELQQSLADKREQESAMIQVLMKVEQ---------EQRITEDARRNAEQDARAQRYAVNVLEEKY 548 (630)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (630)
|+|++.||+--..-++.-+|=|+.+-|+|. |.++.+...+...+-..++|-||.-+-.+|
T Consensus 152 EeEL~~lr~~q~~fe~~R~aEl~e~qrlE~~e~r~~eEkerR~~q~~~~~~~~~~~~~Ki~Ar~~a~~y 220 (291)
T PF06098_consen 152 EEELAALRRQQRAFEELRNAELAEVQRLEEAEKRRREEKERRIKQQKERLEKEKELREKIAARAFAQQY 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.30 E-value=7.6e+02 Score=23.95 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=28.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 432 LEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 432 ~~~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
.++...+.|...+..|+-.+=+...+-.-..+.+........ ...+...+++..++..+.++.+-+.|
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR--ELLKSVEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554443333333333333333322222 33344444555555444444444443
No 138
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=21.26 E-value=3.6e+02 Score=29.65 Aligned_cols=63 Identities=30% Similarity=0.384 Sum_probs=39.2
Q ss_pred ccchHHHHHHHHHHHHHH--HHhhhHHH--HhHHHH----HHHHH-------HHHhhhhHHHH---HHHHHHHHHHHHHH
Q 006813 434 GRDLQEQVVWLKVELCSL--LEDKRSAV--LRAEEL----ETALM-------EMVKQDNRRQL---SARIEQLEQEVAEL 495 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~~l--L~e~~~~~--lr~~el----e~~l~-------~m~~~d~~~~l---~~~~~~~~~~~~~~ 495 (630)
.||..+|+.||..||..| +||++.+. -+++|| .+-|. |++.+|-|..+ +|++-=|+==.|||
T Consensus 37 spdf~~~i~wl~~Elr~L~k~eE~V~q~~~~~~~eF~~elS~lL~El~CPy~eLt~Gdi~~Rf~s~~a~~lLlsyL~SEl 116 (465)
T KOG3973|consen 37 SPDFANQIIWLCAELRELYKIEEYVRQPNDHNLLEFLYELSTLLLELECPYEELTCGDIRTRFQSSSAKKLLLSYLDSEL 116 (465)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHcCCchHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999998766 67887763 333433 23333 45778877554 34444344334444
Q ss_pred H
Q 006813 496 Q 496 (630)
Q Consensus 496 ~ 496 (630)
.
T Consensus 117 ~ 117 (465)
T KOG3973|consen 117 K 117 (465)
T ss_pred H
Confidence 3
No 139
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.17 E-value=1e+03 Score=25.50 Aligned_cols=126 Identities=22% Similarity=0.228 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHhh
Q 006813 446 VELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD-----KREQESAMIQVLMKVEQEQ 520 (630)
Q Consensus 446 ~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 520 (630)
..|..-|+++...+-.-.+.-.+-.+.+. ....+|.++-..|+.|+..|++..++ +.+=+.+. +-|. ++..
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~-~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr-~eL~--~~~~ 223 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD-ELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALR-QELA--EQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHH-HHHH--HHHH
Confidence 34555566666666666666666666665 67778888888899998888887653 22222211 2221 2222
Q ss_pred hhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 006813 521 RITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQA 580 (630)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (630)
+|.+-.+..+|. +--..-++++-++.-+..++++...-=||..++..-.|..+..
T Consensus 224 ~i~~~k~~l~el-----~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev 278 (325)
T PF08317_consen 224 EIEAKKKELAEL-----QEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEV 278 (325)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 233222222221 1222334555566666666666666667777776666655444
No 140
>smart00338 BRLZ basic region leucin zipper.
Probab=20.94 E-value=3.3e+02 Score=21.94 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 006813 480 QLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
.|..+|+.|+++.++|+.-++.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 141
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=2.7e+02 Score=26.83 Aligned_cols=41 Identities=37% Similarity=0.463 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHH
Q 006813 477 NRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAMASVA 556 (630)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (630)
+-+||.+=.+|++|||.-|+..|+ |.+.+|-||+++.++|-
T Consensus 14 sleQL~~lk~q~dqEl~~lq~Sl~---------------------------------------~L~~aq~k~~~~~~aln 54 (153)
T KOG3048|consen 14 SLEQLGALKKQFDQELNFLQDSLN---------------------------------------ALKGAQTKYEESIAALN 54 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHHHh
Confidence 557899999999999998888774 35678899999998875
No 142
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.87 E-value=2.2e+02 Score=30.43 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006813 476 DNRRQLSARIEQLEQEVAELQQSLADKR 503 (630)
Q Consensus 476 d~~~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (630)
+-.++|.-++..||.|+..|||++-.++
T Consensus 262 ~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 262 KRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999987654
No 143
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=20.66 E-value=1e+03 Score=25.28 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHhhhhcH
Q 006813 446 VELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQE-SAMIQVLMKVEQEQRITE 524 (630)
Q Consensus 446 ~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 524 (630)
..+-.-+|.-|..+=.-+..|..|.- -.|.|+.|..+|..|+.. |.+... ..+=|-|+|.|+|--|+|
T Consensus 117 ~~~a~~~d~yR~~LK~IR~~E~sl~p--~R~~r~~l~d~I~kLk~k---------~P~s~kl~~LeqELvraEae~lvaE 185 (271)
T PF13805_consen 117 DQYADRLDQYRIHLKSIRNREESLQP--SRDRRRKLQDEIAKLKYK---------DPQSPKLVVLEQELVRAEAENLVAE 185 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH----------TTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHhHHHHHHHHHHHhc---------CCCChHHHHHHHHHHHHHHHhhHHH
Confidence 34555577778777777777888776 578888898888877642 111111 111122455555554444
Q ss_pred HHhHhhHhhHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 006813 525 DARRNAEQDARAQRYAVNVLEEKYEKAMASVAQM-EKRAVMAES 567 (630)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 567 (630)
|.--.+--.-+.|-|.-=++++-++ ||-+++|+-
T Consensus 186 ---------AqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~ 220 (271)
T PF13805_consen 186 ---------AQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEY 220 (271)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455556667666555666554 677777775
No 144
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=20.60 E-value=7.6e+02 Score=24.10 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=47.3
Q ss_pred hhhHHHHhHHHHHHHHHH----------HHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006813 454 DKRSAVLRAEELETALME----------MVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKV 516 (630)
Q Consensus 454 e~~~~~lr~~ele~~l~~----------m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (630)
..+..+-++.+-...+|. +-++.++-.|..++-++|+++..|++.|..|..+=.++=+-+-|.
T Consensus 47 ~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn 119 (158)
T PF09486_consen 47 AARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARN 119 (158)
T ss_pred HHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444 556788999999999999999999999999999888877766654
No 145
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.52 E-value=1.1e+03 Score=30.35 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHHH
Q 006813 477 NRRQLSARIEQLEQEVAELQQSLADKREQE----SAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKAM 552 (630)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (630)
...+|++.+|....+++++..+.++-+.+- .-.=|.....|+|++-.+|-+....|..++-+-.-.-+++......
T Consensus 413 k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~ 492 (1293)
T KOG0996|consen 413 KIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLL 492 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 456788888888888888888887655432 2234556667788888888888888888888878788888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 006813 553 ASVAQMEKRAVMAESMLEATLQ 574 (630)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~ 574 (630)
..+.+-.-++-.||+=|+--++
T Consensus 493 ~~~n~~~~e~~vaesel~~L~~ 514 (1293)
T KOG0996|consen 493 KQVNEARSELDVAESELDILLS 514 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777778876664443
No 146
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.25 E-value=9.4e+02 Score=24.65 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 006813 441 VVWLKVELCSLLEDKRSAV 459 (630)
Q Consensus 441 ~~~l~~el~~lL~e~~~~~ 459 (630)
+..++.++-++..++..-.
T Consensus 22 L~~~~~~l~~~~~~~~~l~ 40 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELR 40 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544333
Done!