Query 006813
Match_columns 630
No_of_seqs 308 out of 1766
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:39:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 100.0 1.3E-49 4.5E-54 421.5 23.2 282 76-368 37-331 (334)
2 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.6E-49 8.9E-54 414.5 22.5 259 78-356 24-291 (310)
3 3qye_A TBC1 domain family memb 100.0 1.6E-48 5.4E-53 411.9 24.9 262 74-355 46-322 (331)
4 2qfz_A TBC1 domain family memb 100.0 4.7E-46 1.6E-50 395.3 21.7 255 75-338 38-333 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 4.1E-45 1.4E-49 395.7 24.2 252 75-336 21-377 (396)
6 4hl4_A TBC1 domain family memb 100.0 6.7E-46 2.3E-50 386.0 16.6 251 74-343 31-291 (292)
7 3qwl_A TBC1 domain family memb 100.0 1.7E-34 5.8E-39 300.9 13.1 230 69-338 32-283 (294)
8 1pd3_A Nonstructural protein N 85.3 1.6 5.6E-05 33.2 5.4 47 475-521 5-56 (58)
9 3vkg_A Dynein heavy chain, cyt 84.5 12 0.0004 50.1 16.4 34 481-514 1932-1965(3245)
10 1hjb_A Ccaat/enhancer binding 74.5 6 0.00021 33.5 6.1 31 475-505 49-79 (87)
11 3oja_B Anopheles plasmodium-re 74.0 27 0.00094 38.4 13.2 28 537-564 528-555 (597)
12 3vkg_A Dynein heavy chain, cyt 73.7 75 0.0026 42.7 18.7 46 446-491 1902-1953(3245)
13 1c1g_A Tropomyosin; contractIl 65.4 91 0.0031 29.3 20.2 66 438-505 5-70 (284)
14 1gu4_A CAAT/enhancer binding p 63.5 9 0.00031 31.7 4.7 27 475-501 49-75 (78)
15 1x79_B RAB GTPase binding effe 62.8 81 0.0028 27.8 12.5 102 440-542 7-110 (112)
16 3oja_B Anopheles plasmodium-re 59.9 1.1E+02 0.0039 33.3 14.5 13 547-559 566-578 (597)
17 1eg3_A Dystrophin; EF-hand lik 57.1 3.8 0.00013 41.5 1.7 43 441-483 130-172 (261)
18 1kd8_A GABH AIV, GCN4 acid bas 50.8 21 0.00071 25.1 4.0 18 480-497 5-22 (36)
19 2dfs_A Myosin-5A; myosin-V, in 48.8 84 0.0029 37.9 11.7 19 85-103 314-332 (1080)
20 1i84_S Smooth muscle myosin he 48.6 33 0.0011 41.7 8.3 18 86-103 341-358 (1184)
21 3iv1_A Tumor susceptibility ge 45.9 1E+02 0.0034 25.5 8.2 69 469-551 4-72 (78)
22 2wt7_A Proto-oncogene protein 45.7 56 0.0019 25.5 6.5 33 474-506 21-53 (63)
23 1t2k_D Cyclic-AMP-dependent tr 45.5 47 0.0016 25.7 6.0 20 480-499 40-59 (61)
24 1i84_S Smooth muscle myosin he 44.2 42 0.0014 40.8 8.3 13 161-173 348-360 (1184)
25 1ci6_A Transcription factor AT 42.5 24 0.00081 27.8 3.8 37 463-501 26-62 (63)
26 2dfs_A Myosin-5A; myosin-V, in 41.0 2.6E+02 0.0088 33.7 14.3 7 434-440 944-950 (1080)
27 1t2k_D Cyclic-AMP-dependent tr 40.5 1.1E+02 0.0038 23.5 7.5 56 451-514 5-60 (61)
28 2xv5_A Lamin-A/C; structural p 40.2 80 0.0027 25.7 6.8 42 478-519 7-48 (74)
29 1gk6_A Vimentin; intermediate 40.2 67 0.0023 24.8 6.1 40 480-519 4-43 (59)
30 3iox_A AGI/II, PA; alpha helix 39.9 1.6E+02 0.0056 32.1 11.1 66 476-551 2-67 (497)
31 3vmx_A Voltage-gated hydrogen 38.8 75 0.0026 23.8 5.7 34 481-515 9-42 (48)
32 3syn_E ATP-binding protein YLX 38.6 21 0.00073 22.1 2.2 17 546-562 4-20 (23)
33 3i00_A HIP-I, huntingtin-inter 38.2 2E+02 0.0067 25.5 9.6 46 440-497 16-61 (120)
34 1zme_C Proline utilization tra 37.0 24 0.00082 27.4 3.1 24 478-501 46-69 (70)
35 1jcd_A Major outer membrane li 35.7 41 0.0014 25.7 4.0 18 480-497 15-32 (52)
36 1jnm_A Proto-oncogene C-JUN; B 32.9 44 0.0015 26.0 4.0 20 480-499 40-59 (62)
37 1kd8_B GABH BLL, GCN4 acid bas 32.0 62 0.0021 22.7 4.0 16 480-495 5-20 (36)
38 3li6_A Calcium-binding protein 30.6 44 0.0015 24.4 3.6 26 447-472 4-29 (66)
39 3viq_A SWI5-dependent recombin 29.5 55 0.0019 29.2 4.5 37 478-514 9-45 (122)
40 3etw_A Adhesin A; antiparallel 29.0 2.3E+02 0.0079 25.1 8.4 25 533-559 37-61 (119)
41 2lw1_A ABC transporter ATP-bin 28.7 43 0.0015 27.9 3.5 24 479-502 25-48 (89)
42 3mov_A Lamin-B1; LMNB1, B-type 28.7 2.1E+02 0.0072 24.2 7.9 43 477-519 38-80 (95)
43 3tnu_A Keratin, type I cytoske 28.6 3.1E+02 0.01 24.2 12.1 79 434-519 40-120 (131)
44 3m48_A General control protein 28.4 80 0.0027 21.8 4.0 20 480-499 4-30 (33)
45 3mq9_A Bone marrow stromal ant 27.7 2.2E+02 0.0075 30.2 9.8 12 307-318 284-295 (471)
46 1p9i_A Cortexillin I/GCN4 hybr 27.2 57 0.0019 21.5 3.0 14 479-492 16-29 (31)
47 3vem_A Helicase protein MOM1; 26.3 2.8E+02 0.0097 24.4 8.3 53 444-511 37-90 (115)
48 3m48_A General control protein 25.9 68 0.0023 22.2 3.3 17 485-501 2-18 (33)
49 2zxx_A Geminin; coiled-coil, c 25.1 2.9E+02 0.0099 22.8 7.7 30 463-498 27-56 (79)
50 3i5g_C Myosin catalytic light 23.9 1.2E+02 0.004 27.2 5.8 26 447-472 89-114 (159)
51 1x8y_A Lamin A/C; structural p 23.8 3E+02 0.01 22.6 7.9 42 478-519 30-71 (86)
52 2v4h_A NF-kappa-B essential mo 23.6 3.7E+02 0.013 23.5 9.1 36 464-499 65-106 (110)
53 1ci6_A Transcription factor AT 23.0 2.2E+02 0.0074 22.1 6.4 39 475-514 22-60 (63)
54 2pnv_A Small conductance calci 21.8 1.1E+02 0.0038 22.4 4.1 26 475-500 15-40 (43)
55 1uii_A Geminin; human, DNA rep 21.3 2.4E+02 0.0082 23.5 6.5 43 449-502 30-72 (83)
56 1gk4_A Vimentin; intermediate 21.3 3.4E+02 0.012 22.2 7.9 43 477-519 27-69 (84)
57 2oqq_A Transcription factor HY 21.0 2.4E+02 0.0084 20.5 5.8 32 481-513 8-40 (42)
58 3tnu_B Keratin, type II cytosk 21.0 4.2E+02 0.014 23.2 12.1 79 434-519 38-118 (129)
59 2yy0_A C-MYC-binding protein; 20.8 92 0.0031 23.7 3.6 20 480-499 30-49 (53)
60 2k48_A Nucleoprotein; viral pr 20.2 1.9E+02 0.0064 25.2 5.8 24 481-504 80-103 (107)
61 2jee_A YIIU; FTSZ, septum, coi 20.1 3.7E+02 0.013 22.2 8.9 65 446-510 5-75 (81)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=421.51 Aligned_cols=282 Identities=24% Similarity=0.395 Sum_probs=238.5
Q ss_pred CHHHHHHHHhcCCChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhccccc----------ccCCCCCCchhhHHHHHhc
Q 006813 76 WKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESK----------EHDNSFGVPRKWKKQIEKD 145 (630)
Q Consensus 76 ~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~s~----------~~~~~~~~~~k~~~qIekD 145 (630)
..++|+.++++|||+.+|+.||+.++|+.....++.|..+++.....-.+. +...+........++|++|
T Consensus 37 ~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~I~~D 116 (334)
T 2qq8_A 37 CSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLD 116 (334)
T ss_dssp CCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC----------------------CCHHHHHHHH
T ss_pred ChHHHHHHHHCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchhHHHHHHHH
Confidence 447899999999999999999999999987777889998876543111000 0000011124567999999
Q ss_pred CCCCCCCCCCCCh--hhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhhc-cCcCChhHHH
Q 006813 146 IPRTFPAHPALNE--DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYF-DGYYTEEMIE 222 (630)
Q Consensus 146 l~RTfp~~~~F~~--~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~l-~~yf~~~~~~ 222 (630)
|+||||++++|+. .+++.|+|||.+|+.+||++|||||||+|+|+||++++|++|||||+++|+++. .+||..+..+
T Consensus 117 v~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~ 196 (334)
T 2qq8_A 117 ISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGL 196 (334)
T ss_dssp HHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHHHHHHHSSCCHH
T ss_pred HhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhHHhccCCChHH
Confidence 9999999999985 468999999999999999999999999999999999999999999999999874 5788888889
Q ss_pred HHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 006813 223 AQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGP 302 (630)
Q Consensus 223 l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~ 302 (630)
++..+.+|+.+|+.++|+||.||.+.|+.+.+|+++||+|+|+++||++.++||||+||++|..+ +|++|+|||..+++
T Consensus 197 ~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~-l~~valaiL~~~~~ 275 (334)
T 2qq8_A 197 MLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEF-LFRTALGILKLFED 275 (334)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 89999999999999
Q ss_pred HhhcCCCHHHHHHHHHhccCCCCChHHHHHHHHhhcccCCHHHHHHHHHHhhHHHHHHHHHHhhcC
Q 006813 303 ALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLVVEERSKGG 368 (630)
Q Consensus 303 ~LL~~~d~~eii~lLq~l~~~~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~v~~~~e~r~k~~ 368 (630)
.|+++ |+++++.+|+++|. .+|++.|+..|+.... +. +.|++..+.+.++++.+..
T Consensus 276 ~Ll~~-d~~~il~~L~~lp~-~~d~~~l~~~a~~l~~--~~------~~k~~~~~~~~~~~~~~~~ 331 (334)
T 2qq8_A 276 ILTKM-DFIHMAQFLTRLPE-DLPAEELFASIATIQM--QS------RNKKWAQVLTALQKDSREM 331 (334)
T ss_dssp HHHTC-CHHHHHHHHHSCCT-TCCHHHHHHHHHHCCC--EE------TTEEHHHHHHHHHC-----
T ss_pred HHhcC-CHHHHHHHHHhCCC-cCCHHHHHHHHHHccC--cH------HHhhHHHHHHHHHHHHHhh
Confidence 99997 89999999999986 4899999999987442 21 3667778888888776643
No 2
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-49 Score=414.53 Aligned_cols=259 Identities=31% Similarity=0.589 Sum_probs=234.3
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhcCccc-cCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCCCCCCCC
Q 006813 78 EELESLVHGGVPKDLRGELWQAFVGVKAR-RTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPAL 156 (630)
Q Consensus 78 ekLK~lir~GIP~~lR~~VW~~LLGv~~~-~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTfp~~~~F 156 (630)
++|+.++++|||+.+|+.||+.|+|+... .....|..++.... ...++|++|++||||++++|
T Consensus 24 ~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~~~~Y~~l~~~~~----------------~~~~~I~~Dv~Rt~p~~~~f 87 (310)
T 3hzj_A 24 KGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILITKDS----------------AQESVITRDIHRTFPAHDYF 87 (310)
T ss_dssp TTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHHHHHHHHHTTSCC----------------TTHHHHHHHHTTSSTTSTTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCcchhHHHHHHHHHhccC----------------CcHHHHHHHHHhhCCCchhh
Confidence 56999999999999999999999999763 34567877753211 13689999999999999999
Q ss_pred Ch---hhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhh-ccCcCChhHHHHHHhHHHHHH
Q 006813 157 NE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDY-FDGYYTEEMIEAQVDQLVFEE 232 (630)
Q Consensus 157 ~~---~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~-l~~yf~~~~~~l~~~~~vfe~ 232 (630)
.. .+++.|+|||.+|+.+||++|||||||+|+|+||++++|++|||||+++|.++ ++++|.+++++++..+.+|+.
T Consensus 88 ~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (310)
T 3hzj_A 88 KDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLER 167 (310)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHH
Confidence 74 47899999999999999999999999999999999999999999999999986 789999999999999999999
Q ss_pred HHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHhhcCCCHHH
Q 006813 233 LIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELYGPALVTTKDAGD 312 (630)
Q Consensus 233 LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~LL~~~d~~e 312 (630)
+++.++|+||.||.+.|+.+.+|+++||+|+|++++|++.++||||+||++|.++ +|++|+|+|..+++.|+++ |+++
T Consensus 168 ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~-l~~v~lail~~~~~~Ll~~-d~~~ 245 (310)
T 3hzj_A 168 LMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNI-IFHVALALLKTSKEDLLQA-DFEG 245 (310)
T ss_dssp HHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHTHHHHHTC-CHHH
T ss_pred HHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHcC-CHHH
Confidence 9999999999999999999999999999999999999999999999999999998 8999999999999999997 9999
Q ss_pred HHHHHH-hccCC---CCChHHHHHHHHhhcccCCHHHHHHHHHHhhHH
Q 006813 313 AITLLQ-SLAGS---TFDSSQLVFTACMGYLTVTEARLQELREKHRPA 356 (630)
Q Consensus 313 ii~lLq-~l~~~---~~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~~ 356 (630)
++.+|+ .++.. ..|++.|+..|+.. .++++.|.+++.+|...
T Consensus 246 ~l~~l~~~lp~~~~~~~d~~~ll~~A~~l--~~~~~~l~~~~~ey~~~ 291 (310)
T 3hzj_A 246 ALKFFRVQLPKRYRAEENARRLMEQACNI--KVPTKKLKKYEKEYQTM 291 (310)
T ss_dssp HHHHHHTHHHHTTCSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccccccHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 999997 45533 34788999999863 59999999999998763
No 3
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.6e-48 Score=411.90 Aligned_cols=262 Identities=28% Similarity=0.485 Sum_probs=234.5
Q ss_pred CCCHHHHHHHHhcCCChhhHHHHHHHHhcCcc---------ccCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHh
Q 006813 74 FPWKEELESLVHGGVPKDLRGELWQAFVGVKA---------RRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEK 144 (630)
Q Consensus 74 ~~~~ekLK~lir~GIP~~lR~~VW~~LLGv~~---------~~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIek 144 (630)
..+.++|+.++++|||+.+|+.||+.|+|+.. ......|.++++... ...++|++
T Consensus 46 ~~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~~~----------------~~~~~I~~ 109 (331)
T 3qye_A 46 KFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLT----------------SQQHAILI 109 (331)
T ss_dssp CCCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTSCC----------------TTHHHHHH
T ss_pred cCCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHhcC----------------CchhHHHH
Confidence 35678999999999999999999999999865 123467888864321 13589999
Q ss_pred cCCCCCCCCCCCCh---hhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhh-ccCcCChhH
Q 006813 145 DIPRTFPAHPALNE---DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDY-FDGYYTEEM 220 (630)
Q Consensus 145 Dl~RTfp~~~~F~~---~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~-l~~yf~~~~ 220 (630)
|++||||++++|.. .++..|+|||.+|+.+||++|||||||+|+|+||++++|++|||||+++|.++ ++++|.+++
T Consensus 110 Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~ 189 (331)
T 3qye_A 110 DLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDM 189 (331)
T ss_dssp HHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTC
T ss_pred hhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCCh
Confidence 99999999999974 57899999999999999999999999999999999999999999999999987 788999999
Q ss_pred HHHHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 006813 221 IEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELY 300 (630)
Q Consensus 221 ~~l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~ 300 (630)
.+++..+.+|+.+++.++|+||.||.+.|+.+.+|+++||+|+|++.||++.++||||+||++|.++ +|++|+|||..+
T Consensus 190 ~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~-l~~valaiL~~~ 268 (331)
T 3qye_A 190 IILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEV-IFKVALSLLGSH 268 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred hhHhhcCCCHHHHHHHHHhccCCC--CChHHHHHHHHhhcccCCHHHHHHHHHHhhH
Q 006813 301 GPALVTTKDAGDAITLLQSLAGST--FDSSQLVFTACMGYLTVTEARLQELREKHRP 355 (630)
Q Consensus 301 ~~~LL~~~d~~eii~lLq~l~~~~--~D~~~Li~~A~~~~~~i~~~~L~~LR~k~~~ 355 (630)
++.|++++|+++++.+|++..+.. .|++.++..|+.. .+ ++.+.+++..|..
T Consensus 269 ~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l--~~-s~~l~~~e~ey~~ 322 (331)
T 3qye_A 269 KPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEM--DI-AKQLQAYEVEYHV 322 (331)
T ss_dssp HHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC--Cc-hHHHHHHHHHHHH
Confidence 999999999999999999855532 3778899999863 34 4788888877764
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=4.7e-46 Score=395.31 Aligned_cols=255 Identities=22% Similarity=0.375 Sum_probs=222.6
Q ss_pred CCHHHHHHHHhcCCChhhHHHHHHHHhcCcccc----------CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHh
Q 006813 75 PWKEELESLVHGGVPKDLRGELWQAFVGVKARR----------TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEK 144 (630)
Q Consensus 75 ~~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~----------~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIek 144 (630)
.+.++|+.++++|||+.+|+.||+.|+|+.+.. ....|..+++....... .....+..++|++
T Consensus 38 ~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~-------~~~~~~~~~~I~~ 110 (345)
T 2qfz_A 38 TDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRN-------DEVHQDTYRQIHI 110 (345)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-------ccchHHHHHHHHH
Confidence 467899999999999999999999999986532 34679988876532211 1123457899999
Q ss_pred cCCCCCCCCCCCCh-hhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcC-------------------------Chh
Q 006813 145 DIPRTFPAHPALNE-DGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLM-------------------------PEE 198 (630)
Q Consensus 145 Dl~RTfp~~~~F~~-~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~-------------------------~Ee 198 (630)
||.||+|+ ++|+. .++..|+|||.+|+.+||++|||||||+|+++|++++ .|+
T Consensus 111 Dv~RT~p~-~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~ 189 (345)
T 2qfz_A 111 DIPRMSPE-ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEA 189 (345)
T ss_dssp HGGGCSCH-HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHH
T ss_pred hCcccCCc-cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHH
Confidence 99999999 99974 5689999999999999999999999999999998764 289
Q ss_pred HHHHHHHHhHHhhccCcCChhHHHHHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHH
Q 006813 199 NAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWD 278 (630)
Q Consensus 199 dAFw~L~~Lm~~~l~~yf~~~~~~l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD 278 (630)
+|||||+++|+++ +++|..++++++..+.+|+.+|+.++|+||.||.+.|+.+.+|+++||+|+|+++||++.++||||
T Consensus 190 daF~~f~~lm~~~-~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD 268 (345)
T 2qfz_A 190 DTYWCMSKLLDGI-QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWD 268 (345)
T ss_dssp HHHHHHHHHHHTS-GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHH
Confidence 9999999999986 678888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCch--HHHHHHHHHHHHhhhHhhcCCCHHHHHHHHHhccCCCC---ChHHHHHHHHhhc
Q 006813 279 VLLYEGNRV--MLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTF---DSSQLVFTACMGY 338 (630)
Q Consensus 279 ~ff~eG~~~--~LfrvaLALL~~~~~~LL~~~d~~eii~lLq~l~~~~~---D~~~Li~~A~~~~ 338 (630)
+||++|.++ +++++|+|+|..+++.|+.+.|+++++.+|++++...+ |++.|+..|+...
T Consensus 269 ~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~ 333 (345)
T 2qfz_A 269 TYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLK 333 (345)
T ss_dssp HHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHH
Confidence 999999874 47789999999999999988899999999999998765 5788999988643
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=4.1e-45 Score=395.67 Aligned_cols=252 Identities=22% Similarity=0.369 Sum_probs=222.3
Q ss_pred CCHHHHHHHHhcCCChhhHHHHHHHHhcCcccc----------CHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHh
Q 006813 75 PWKEELESLVHGGVPKDLRGELWQAFVGVKARR----------TESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEK 144 (630)
Q Consensus 75 ~~~ekLK~lir~GIP~~lR~~VW~~LLGv~~~~----------~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIek 144 (630)
.+.++|+.++++|||+.+|+.||+.|+|+.+.. ....|.++++..... ......+..++|++
T Consensus 21 ~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~--------~~~~~~~~~~qI~~ 92 (396)
T 1fkm_A 21 INQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSD--------QHSRDIPTWHQIEI 92 (396)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSS--------SCSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhc--------cCcccHHHHHHHHH
Confidence 568899999999999999999999999997632 356799988764321 11223457899999
Q ss_pred cCCCCCCCCCCCC-hhhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhc----------------------CC-----
Q 006813 145 DIPRTFPAHPALN-EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLL----------------------MP----- 196 (630)
Q Consensus 145 Dl~RTfp~~~~F~-~~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~----------------------~~----- 196 (630)
||.||||++++|+ +.+++.|+|||.+|+.+||++|||||||+|+++||++ ++
T Consensus 93 Dv~RT~p~~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (396)
T 1fkm_A 93 DIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQIT 172 (396)
T ss_dssp HGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHH
T ss_pred HhhhhCCCcccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhh
Confidence 9999999999997 5678999999999999999999999999999999875 33
Q ss_pred --hhHHHHHHHHhHHhhccCcCChhHHHHHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHH
Q 006813 197 --EENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVL 274 (630)
Q Consensus 197 --EedAFw~L~~Lm~~~l~~yf~~~~~~l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vl 274 (630)
|++|||||++||+++ +++|.+++++++..+.+|+.||+.++|+||.||.+.|+.+.+|+++||+|||+++||++.++
T Consensus 173 ~~E~daF~~f~~lm~~~-~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vl 251 (396)
T 1fkm_A 173 DLEADTFWCLTKLLEQI-TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVI 251 (396)
T ss_dssp HHHHHHHHHHHHHHGGG-GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHH
Confidence 899999999999985 67888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---------------------------------------------------C-----------chHHHHH
Q 006813 275 RVWDVLLYEG---------------------------------------------------N-----------RVMLFRT 292 (630)
Q Consensus 275 RIWD~ff~eG---------------------------------------------------~-----------~~~Lfrv 292 (630)
||||+||++| . ..+++++
T Consensus 252 rlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 331 (396)
T 1fkm_A 252 RMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFV 331 (396)
T ss_dssp HHHHHHHHHHC------------------------------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHH
Confidence 9999999988 2 1237789
Q ss_pred HHHHHHHhhhHhhcCCCHHHHHHHHHhccCCCC---ChHHHHHHHHh
Q 006813 293 ALALMELYGPALVTTKDAGDAITLLQSLAGSTF---DSSQLVFTACM 336 (630)
Q Consensus 293 aLALL~~~~~~LL~~~d~~eii~lLq~l~~~~~---D~~~Li~~A~~ 336 (630)
|+|+|..+++.|++ .|+++++.+|++++...+ |++.|+..|+.
T Consensus 332 ~~AlL~~~r~~Ll~-~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~ 377 (396)
T 1fkm_A 332 CAAFLIKWSDQLME-MDFQETITFLQNPPTKDWTETDIEMLLSEAFI 377 (396)
T ss_dssp HHHHHHHTHHHHTT-CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHhcCCCCCcccccHHHHHHHHHH
Confidence 99999999999998 489999999999987654 78889998875
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=6.7e-46 Score=385.96 Aligned_cols=251 Identities=17% Similarity=0.204 Sum_probs=221.2
Q ss_pred CCCHHHHHHHHhcC---CChhhHHHHHHHHhcCccccCHHHHHHHHHHhhhcccccccCCCCCCchhhHHHHHhcCCCCC
Q 006813 74 FPWKEELESLVHGG---VPKDLRGELWQAFVGVKARRTESYYQDLLAQEINADESKEHDNSFGVPRKWKKQIEKDIPRTF 150 (630)
Q Consensus 74 ~~~~ekLK~lir~G---IP~~lR~~VW~~LLGv~~~~~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k~~~qIekDl~RTf 150 (630)
..+.++|+.+++.| +|+.+|+.||+.|+|+.+...+..|....... .+..++|++|++|||
T Consensus 31 ~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~----------------~~~~~qI~~Dv~RT~ 94 (292)
T 4hl4_A 31 PTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQM----------------SKDYQQVLLDVRRSL 94 (292)
T ss_dssp SCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSCCCTTHHHH----------------CTTHHHHHHHHHTTG
T ss_pred cccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCchhhhhccc----------------chhHHHHHHhhhhhh
Confidence 35678999998853 89999999999999998876555554322111 125799999999999
Q ss_pred CCCCCCC-----hhhHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCChhHHHHHHHHhHHhhccCcCChhHHHHHH
Q 006813 151 PAHPALN-----EDGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQV 225 (630)
Q Consensus 151 p~~~~F~-----~~g~~~L~rIL~aya~~nP~IGY~QGMn~IaalLLl~~~EedAFw~L~~Lm~~~l~~yf~~~~~~l~~ 225 (630)
|.++.|. ..+++.|+|||.+|+.+||++|||||||+|+|+||++++|++|||||+++++.++++||.+++.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~l~~~~~~~~~~~~~ 174 (292)
T 4hl4_A 95 RRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDPTMDNTKH 174 (292)
T ss_dssp GGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTTTTGGGCSSSCTTTG
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 9999884 23578999999999999999999999999999999999999999999999999899999999999999
Q ss_pred hHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCC-hHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHh
Q 006813 226 DQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILP-WESVLRVWDVLLYEGNRVMLFRTALALMELYGPAL 304 (630)
Q Consensus 226 ~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP-~e~vlRIWD~ff~eG~~~~LfrvaLALL~~~~~~L 304 (630)
.+.+++.+|+.++|+||.||.+.++ ..+|+++||+|+|++++| ++.++||||+||++|+.+ ++++|+||+..+++.|
T Consensus 175 ~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~-~~~v~~ail~~~~~~L 252 (292)
T 4hl4_A 175 ILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLM-PIYFAAVIVLYREQEV 252 (292)
T ss_dssp GGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTH-HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 579999999999999996 999999999999999987 7889999999999999
Q ss_pred hcCC-CHHHHHHHHHhccCCCCChHHHHHHHHhhcccCCH
Q 006813 305 VTTK-DAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTE 343 (630)
Q Consensus 305 L~~~-d~~eii~lLq~l~~~~~D~~~Li~~A~~~~~~i~~ 343 (630)
++++ |++.++.++++++. ..|++.++..|...+...++
T Consensus 253 l~~~~d~~~l~~~l~~lp~-~~d~~~li~~A~~l~~~~pp 291 (292)
T 4hl4_A 253 LDCDCDMASVHHLLSQIPQ-DLPYETLISRAGDLFVQFPP 291 (292)
T ss_dssp HTSCCSTTHHHHHHHSCCS-SCCHHHHHHHHHHHHHHSCC
T ss_pred HcCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHCCC
Confidence 9985 78888889999874 78999999999987776654
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=300.89 Aligned_cols=230 Identities=17% Similarity=0.249 Sum_probs=184.5
Q ss_pred CCCCCCCCHHHHHHHHhcC-CChhhHHHHHHHHhcCcccc----------CHHHHHHHHHHhhhcccccccCCCCCCchh
Q 006813 69 SPEPYFPWKEELESLVHGG-VPKDLRGELWQAFVGVKARR----------TESYYQDLLAQEINADESKEHDNSFGVPRK 137 (630)
Q Consensus 69 ~~~~~~~~~ekLK~lir~G-IP~~lR~~VW~~LLGv~~~~----------~~~~Y~~Ll~~~~~~~~s~~~~~~~~~~~k 137 (630)
-+.+...+.++|+.++|+| ||+.+|+.||+.|+|+.+.. +...|.+++....
T Consensus 32 ll~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~~----------------- 94 (294)
T 3qwl_A 32 LLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHALK----------------- 94 (294)
T ss_dssp HTTSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HhcCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhhh-----------------
Confidence 3456778899999999999 99999999999999996632 3466777765421
Q ss_pred hHHHHHhcCCCCCCCCCCCChhhHHHHHHHHHHHHh----------hCCCCCcccchhHHHHHHhhc-CChhHHHHHHHH
Q 006813 138 WKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYAL----------HNPSVGYCQAMNFFAGLLLLL-MPEENAFWTFVG 206 (630)
Q Consensus 138 ~~~qIekDl~RTfp~~~~F~~~g~~~L~rIL~aya~----------~nP~IGY~QGMn~IaalLLl~-~~EedAFw~L~~ 206 (630)
+.++|.. ..|-+ ...+..|.. .+++ .++|||..|+++++.+ .+|++|||||++
T Consensus 95 ~~r~I~~----~tP~~-----------~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~ 158 (294)
T 3qwl_A 95 VVRFVSD----ATPQA-----------EVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRR 158 (294)
T ss_dssp HTTSCCT----TSCHH-----------HHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred hhhhhhc----cCchH-----------HHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1223332 22211 112222221 1222 2569999999998865 589999999999
Q ss_pred hHHhhccCcCChhHHHHHHhHHHHHHHHHhhChhhhhhhhhccccchhhhhhhhhhhhcccCChHHHHHHHHHHHhcCCc
Q 006813 207 IIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPKLVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNR 286 (630)
Q Consensus 207 Lm~~~l~~yf~~~~~~l~~~~~vfe~LLk~~~PeL~~HL~~lgi~~~~f~~~WfltLFs~~LP~e~vlRIWD~ff~eG~~ 286 (630)
+|++ +.++|.++++|++. .++.||+.++|+||.||++.|+.+.+++.+||+|+|++++|++.++||||+||++|.+
T Consensus 159 Lm~~-l~~~f~~~~~gl~~---~l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~ 234 (294)
T 3qwl_A 159 FVNQ-LNTKYRDSLPQLPK---AFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCK 234 (294)
T ss_dssp HHHH-HHTTTTTTGGGHHH---HHHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCST
T ss_pred HHHH-HHHhhCCChhHHHH---HHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCch
Confidence 9999 45888999988876 3599999999999999999999888888899999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhhhHhhcCCCHHHHHHHHHhccCCCCChHHHHHHHHhhc
Q 006813 287 VMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGY 338 (630)
Q Consensus 287 ~~LfrvaLALL~~~~~~LL~~~d~~eii~lLq~l~~~~~D~~~Li~~A~~~~ 338 (630)
+ ++++|+|+|+.+++.|+++++.++++.+|++++ ..|++.++..|+..+
T Consensus 235 ~-l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp--~~di~~ll~~A~~l~ 283 (294)
T 3qwl_A 235 I-LVFVAVEILLTFKIKVMALNSAEKITKFLENIP--QDSSDAIVSKAIDLW 283 (294)
T ss_dssp H-HHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCC--STTHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCC--cccHHHHHHHHHHHH
Confidence 8 788999999999999999988899999999998 457999999998643
No 8
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=85.27 E-value=1.6 Score=33.22 Aligned_cols=47 Identities=34% Similarity=0.475 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHH--HHHHHHHHHhhh
Q 006813 475 QDNRRQLSARIEQLEQEVAELQQSLA---DKREQESAM--IQVLMKVEQEQR 521 (630)
Q Consensus 475 ~d~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~ 521 (630)
+.-|++||.|.|...==+.|+|..|. +-=||=.-| ||.|+.||||-+
T Consensus 5 ~kwReqL~qKFEeIRwlIeE~Rh~Lk~TensfeQItfmqalQLlleveqeir 56 (58)
T 1pd3_A 5 GKWREQLGQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQLLLEVEQEIR 56 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999988999998774 556777766 899999999864
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.51 E-value=12 Score=50.13 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006813 481 LSARIEQLEQEVAELQQSLADKREQESAMIQVLM 514 (630)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (630)
-+++|+.|.+++++++..|..|+++-.+||+.+.
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~ 1965 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888877776666543
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=74.53 E-value=6 Score=33.47 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006813 475 QDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (630)
Q Consensus 475 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (630)
..-...|.++|++|+.|+..|+++|.+..++
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 3445689999999999999999999987764
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.96 E-value=27 Score=38.36 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006813 537 QRYAVNVLEEKYEKAMASVAQMEKRAVM 564 (630)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (630)
++=+++-.+++|++.-....+||++.-.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 3334455666666655566666665433
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.69 E-value=75 Score=42.75 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhHHHHhHH-HHHHHHHHHHh-----hhhHHHHHHHHHHHHHH
Q 006813 446 VELCSLLEDKRSAVLRAE-ELETALMEMVK-----QDNRRQLSARIEQLEQE 491 (630)
Q Consensus 446 ~el~~lL~e~~~~~lr~~-ele~~l~~m~~-----~d~~~~l~~~~~~~~~~ 491 (630)
.-...||.+||..+.... =|+.+|.-+-. .++..+|.++-.+|++.
T Consensus 1902 ~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888887776554 36666655443 34555555555555443
No 13
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=65.45 E-value=91 Score=29.29 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006813 438 QEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQ 505 (630)
Q Consensus 438 ~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (630)
..-+.||+.++-.+..+.....-.-.++...+...- .....+.++++.++.++.+++..+...+.+
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLE--DELVSLQKKLKATEDELDKYSEALKDAQEK 70 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544444444444444333321 112333344444444444444444443333
No 14
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=63.49 E-value=9 Score=31.74 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 475 QDNRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 475 ~d~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
..-...|.++|++|+.|+..|+++|..
T Consensus 49 ~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 49 TAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334568999999999999999998864
No 15
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=62.85 E-value=81 Score=27.80 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006813 440 QVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNR--RQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVE 517 (630)
Q Consensus 440 q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (630)
|+.-|.+++-+|=++.-...--..+|+..+.+-.+.--. -.|-++++.-|+.+.+||++++.-+..=+-.|++|.. .
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~-~ 85 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ-S 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344444444333333333333345677776654433222 2467788888999999999999888887777888764 3
Q ss_pred HhhhhcHHHhHhhHhhHHHhHHHHH
Q 006813 518 QEQRITEDARRNAEQDARAQRYAVN 542 (630)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (630)
+|+=-.|--|.-+|-|--.=||.+|
T Consensus 86 Re~V~~eL~rLQ~eNd~L~Gk~~~h 110 (112)
T 1x79_B 86 REQVSEELVRLQKDNDSLQGKHSLH 110 (112)
T ss_dssp HHHHHTC------------------
T ss_pred HHHHHHHHHHHHhhccchhhhhhhc
Confidence 4443344445555655554455544
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.88 E-value=1.1e+02 Score=33.32 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 006813 547 KYEKAMASVAQME 559 (630)
Q Consensus 547 ~~~~~~~~~~~~~ 559 (630)
.-..+.+.+.++|
T Consensus 566 e~~~~~~~~~~l~ 578 (597)
T 3oja_B 566 ETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444433
No 17
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=57.09 E-value=3.8 Score=41.49 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 006813 441 VVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSA 483 (630)
Q Consensus 441 ~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~ 483 (630)
+.-+...+|+..|.++++.|++.||..||..+++|..-+||.-
T Consensus 130 ~~~~a~~lf~~FD~~~~G~I~f~ef~~aLs~l~rG~leeKL~w 172 (261)
T 1eg3_A 130 VDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRY 172 (261)
T ss_dssp HHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCceEeHHHHHHHHHHHcCCCHHHHHHH
Confidence 3347788999999999999999999999999999988777654
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=50.82 E-value=21 Score=25.10 Aligned_cols=18 Identities=44% Similarity=0.647 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006813 480 QLSARIEQLEQEVAELQQ 497 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~ 497 (630)
||.+|||.|..+.++|..
T Consensus 5 QLE~kVEeLl~~~~~Le~ 22 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLEN 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 677888877666666543
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.81 E-value=84 Score=37.85 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=15.4
Q ss_pred hcCCChhhHHHHHHHHhcC
Q 006813 85 HGGVPKDLRGELWQAFVGV 103 (630)
Q Consensus 85 r~GIP~~lR~~VW~~LLGv 103 (630)
.-|++++-...||.+|.++
T Consensus 314 ~lg~~~~e~~~i~~ilaaI 332 (1080)
T 2dfs_A 314 LLGISDSYQMGIFRILAGI 332 (1080)
T ss_dssp HTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 3599999999999988654
No 20
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=48.65 E-value=33 Score=41.69 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=13.8
Q ss_pred cCCChhhHHHHHHHHhcC
Q 006813 86 GGVPKDLRGELWQAFVGV 103 (630)
Q Consensus 86 ~GIP~~lR~~VW~~LLGv 103 (630)
-||++.-...||.+|.++
T Consensus 341 lg~~~~e~~~i~~ilaai 358 (1184)
T 1i84_S 341 MGFTEEEQTSILRVVSSV 358 (1184)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHH
Confidence 488888888888887654
No 21
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=45.86 E-value=1e+02 Score=25.50 Aligned_cols=69 Identities=16% Similarity=0.314 Sum_probs=44.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHH
Q 006813 469 LMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKY 548 (630)
Q Consensus 469 l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (630)
|+-.|..-.||.|..+++|--+|+..||+.=.+-.+=-+-.-=.+-|+++|+.- =.-.+.+|++|-
T Consensus 4 llSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~--------------l~~ni~~lk~K~ 69 (78)
T 3iv1_A 4 LISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE--------------VDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 455677888888888888888888888887555444333333334466665532 223466777776
Q ss_pred HHH
Q 006813 549 EKA 551 (630)
Q Consensus 549 ~~~ 551 (630)
++.
T Consensus 70 ~EL 72 (78)
T 3iv1_A 70 EEL 72 (78)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 22
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.67 E-value=56 Score=25.52 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006813 474 KQDNRRQLSARIEQLEQEVAELQQSLADKREQE 506 (630)
Q Consensus 474 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (630)
+.+-...|..+|+.|+.+-.+|+.-++.-+++-
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666665544433
No 23
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.47 E-value=47 Score=25.70 Aligned_cols=20 Identities=45% Similarity=0.602 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 006813 480 QLSARIEQLEQEVAELQQSL 499 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~ 499 (630)
.|.++|.+|..|+..|++.|
T Consensus 40 ~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 40 QLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555544
No 24
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=44.22 E-value=42 Score=40.77 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 006813 161 RDSLRRLLLAYAL 173 (630)
Q Consensus 161 ~~~L~rIL~aya~ 173 (630)
+..+.+||.+..+
T Consensus 348 ~~~i~~ilaaiLh 360 (1184)
T 1i84_S 348 QTSILRVVSSVLQ 360 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3455555555443
No 25
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.52 E-value=24 Score=27.81 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 463 EELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 463 ~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
++|+...-++- .-...|.++|++|+.|+..|++.|.+
T Consensus 26 ~~le~~~~~L~--~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 26 EALTGECKELE--KKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34554444432 22456888888888888888877753
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.02 E-value=2.6e+02 Score=33.68 Aligned_cols=7 Identities=29% Similarity=0.320 Sum_probs=0.0
Q ss_pred ccchHHH
Q 006813 434 GRDLQEQ 440 (630)
Q Consensus 434 ~~~~~~q 440 (630)
...|+++
T Consensus 944 n~~L~~~ 950 (1080)
T 2dfs_A 944 YKSLLEK 950 (1080)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3334433
No 27
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.45 E-value=1.1e+02 Score=23.51 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=37.3
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006813 451 LLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLM 514 (630)
Q Consensus 451 lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (630)
.++.||-|.-+..+ =+..-...|..+|+.|+.+-++|+.-++.-+++-..+-|+||
T Consensus 5 r~erNr~AA~k~R~--------rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 5 FLERNRAAASRSRQ--------KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555544432 344556778888888888888888888777776666656554
No 28
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=40.18 E-value=80 Score=25.71 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 006813 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (630)
|..+.+.|..||+++.++|+-++.....-+..+-|=+++|.|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~E 48 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888999999998887766544446677777777766
No 29
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=40.15 E-value=67 Score=24.83 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 006813 480 QLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (630)
++.+++..||.+++.+|+-.+.--..=+..+-|=+++|.|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~E 43 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIE 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5678899999999999888776544446677777777766
No 30
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=39.88 E-value=1.6e+02 Score=32.13 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcHHHhHhhHhhHHHhHHHHHHHHHHHHHH
Q 006813 476 DNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYAVNVLEEKYEKA 551 (630)
Q Consensus 476 d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (630)
+|-..-.|++.+-++|++.++++=+|.++-=.+-|. -.-++-|+|-||-.|..||.|+. +.+||++
T Consensus 2 ~~~a~yq~~la~yq~elarvqkana~aka~Ye~~~a--------e~~a~n~~i~aeNeaikkrNa~a--ka~Ye~~ 67 (497)
T 3iox_A 2 ANEADYQAKLTAYQTELARVQKANADAKAAYEAAVA--------ANNAANAALTAENTAIKKRNADA--KADYEAK 67 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 455567788999999999999998886543222111 11135678899999999998875 4444444
No 31
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=38.84 E-value=75 Score=23.84 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006813 481 LSARIEQLEQEVAELQQSLADKREQESAMIQVLMK 515 (630)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (630)
|+.--++|-+.|.+| +-..++.|||..=|+-|+|
T Consensus 9 LKe~n~~L~~kv~~L-e~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 9 LKQINIQLATKIQHL-EFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHccHHHHHHHHHHHHHH
Confidence 344445555556666 4567888999888888876
No 32
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=38.56 E-value=21 Score=22.05 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006813 546 EKYEKAMASVAQMEKRA 562 (630)
Q Consensus 546 ~~~~~~~~~~~~~~~~~ 562 (630)
..|++|-..-|.||||-
T Consensus 4 nrydqaatlrakmekre 20 (23)
T 3syn_E 4 NRYDQAATLRAKMEKRE 20 (26)
T ss_pred chHHHHHHHHHHHHHHh
Confidence 36899999999999985
No 33
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=38.15 E-value=2e+02 Score=25.53 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 006813 440 QVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQ 497 (630)
Q Consensus 440 q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~ 497 (630)
+++.|+-|+.+|=-+.-.-.+. .+.--.+|..+|-+||+|+++-|+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E------------~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTE------------SQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666888877775444332222 344445677888888888888663
No 34
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=37.04 E-value=24 Score=27.42 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 006813 478 RRQLSARIEQLEQEVAELQQSLAD 501 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~ 501 (630)
.+.|..+|++||+.|..|+..|++
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456888888899988888887654
No 35
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.69 E-value=41 Score=25.67 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006813 480 QLSARIEQLEQEVAELQQ 497 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~ 497 (630)
+|++||.||..+|..||.
T Consensus 15 ~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 15 TANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666666554
No 36
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.92 E-value=44 Score=25.96 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 006813 480 QLSARIEQLEQEVAELQQSL 499 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~ 499 (630)
.|.++|.+|+.|+..|++.|
T Consensus 40 ~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 40 ELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555544444433
No 37
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.97 E-value=62 Score=22.72 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006813 480 QLSARIEQLEQEVAEL 495 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~ 495 (630)
||.+|||.|-.+-++|
T Consensus 5 QLE~KVEeLl~~~~~L 20 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 5667777654433333
No 38
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=30.56 E-value=44 Score=24.43 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=22.8
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHHHH
Q 006813 447 ELCSLLEDKRSAVLRAEELETALMEM 472 (630)
Q Consensus 447 el~~lL~e~~~~~lr~~ele~~l~~m 472 (630)
++|+.+|.+.++.|..+||..+|..+
T Consensus 4 ~~F~~~D~d~~G~i~~~e~~~~l~~~ 29 (66)
T 3li6_A 4 ALFKEIDVNGDGAVSYEEVKAFVSKK 29 (66)
T ss_dssp HHHHHHCTTCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcccHHHHHHHHHHc
Confidence 67899999999999999999888765
No 39
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=29.51 E-value=55 Score=29.22 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006813 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLM 514 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (630)
++.|.++|..|+.++..|+|++.-+..-+.+-|+.|+
T Consensus 9 ~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI 45 (122)
T 3viq_A 9 RLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLI 45 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5778999999999999999998877777777788775
No 40
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=28.97 E-value=2.3e+02 Score=25.12 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=11.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006813 533 DARAQRYAVNVLEEKYEKAMASVAQME 559 (630)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (630)
++|+++-|-. ++.|++.-..++.|+
T Consensus 37 E~A~~~La~~--~~l~~~i~er~~~i~ 61 (119)
T 3etw_A 37 DAARQALAQN--EQVYNELSQRAQRLQ 61 (119)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5555554443 444544444444443
No 41
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.74 E-value=43 Score=27.92 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Q 006813 479 RQLSARIEQLEQEVAELQQSLADK 502 (630)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~~~~~~ 502 (630)
.+|-++|++||+++++|...|+|-
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 357788899999998888888763
No 42
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=28.72 E-value=2.1e+02 Score=24.24 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 006813 477 NRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (630)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (630)
-.+++.+.+..||+++..+|+-++..-..=+..+-|=+++|.|
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~E 80 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDME 80 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888899999988887776544445677777777766
No 43
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.59 E-value=3.1e+02 Score=24.23 Aligned_cols=79 Identities=25% Similarity=0.313 Sum_probs=51.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006813 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMV--KQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQ 511 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~--~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (630)
+.++.-++..|..|+--+...+. -|+.+|.++= ..-....+.+++..||.++..+|+-++.--..=+.++-
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~-------sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKA-------SLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888766654443 3455554432 22334567888999999999999887765444456777
Q ss_pred HHHHHHHh
Q 006813 512 VLMKVEQE 519 (630)
Q Consensus 512 ~~~~~~~~ 519 (630)
|=|++|.|
T Consensus 113 vKl~Ld~E 120 (131)
T 3tnu_A 113 VKTRLEQE 120 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777766
No 44
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.44 E-value=80 Score=21.82 Aligned_cols=20 Identities=50% Similarity=0.753 Sum_probs=10.6
Q ss_pred HHHHHHHH-------HHHHHHHHHHHh
Q 006813 480 QLSARIEQ-------LEQEVAELQQSL 499 (630)
Q Consensus 480 ~l~~~~~~-------~~~~~~~~~~~~ 499 (630)
||..|||. ||+||..|+..|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45555555 455555555544
No 45
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.68 E-value=2.2e+02 Score=30.17 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHH
Q 006813 307 TKDAGDAITLLQ 318 (630)
Q Consensus 307 ~~d~~eii~lLq 318 (630)
+++.+.+..+++
T Consensus 284 sk~~eaA~~Fi~ 295 (471)
T 3mq9_A 284 SPNKELAKEFLE 295 (471)
T ss_dssp CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 345666666665
No 46
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=27.22 E-value=57 Score=21.50 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q 006813 479 RQLSARIEQLEQEV 492 (630)
Q Consensus 479 ~~l~~~~~~~~~~~ 492 (630)
.||.||||.|-+.|
T Consensus 16 kqlkakveellakv 29 (31)
T 1p9i_A 16 KQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 47788887776554
No 47
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.28 E-value=2.8e+02 Score=24.39 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHH
Q 006813 444 LKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADK-REQESAMIQ 511 (630)
Q Consensus 444 l~~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 511 (630)
|+.||-||--+.-...= .+.|-+-||.+. .|+|++++++-.--| ||.|.+-+|
T Consensus 37 L~~ELeRLr~~~d~~~K------------~HE~kklqLkse---~e~E~ae~k~KYD~~lqe~ese~~~ 90 (115)
T 3vem_A 37 FLHELEKLRRESENSKK------------TFEEKKSILKAE---LERKMAEVQAEFRRKFHEVEAEHNT 90 (115)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899998765544433 444556677665 677888888765332 455555544
No 48
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.95 E-value=68 Score=22.17 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 006813 485 IEQLEQEVAELQQSLAD 501 (630)
Q Consensus 485 ~~~~~~~~~~~~~~~~~ 501 (630)
.-|||..|.+|-+--++
T Consensus 2 M~QLE~kVEeLl~~n~~ 18 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWN 18 (33)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHH
Confidence 34788888777654433
No 49
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.06 E-value=2.9e+02 Score=22.78 Aligned_cols=30 Identities=37% Similarity=0.499 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006813 463 EELETALMEMVKQDNRRQLSARIEQLEQEVAELQQS 498 (630)
Q Consensus 463 ~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~ 498 (630)
..|..||.| .++|-..|+++..|++.|++-
T Consensus 27 ~AL~eaL~E------N~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 27 KALYEALKE------NEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 456666654 578899999999999888763
No 50
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=23.92 E-value=1.2e+02 Score=27.16 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=23.9
Q ss_pred HHHHHHHhhhHHHHhHHHHHHHHHHH
Q 006813 447 ELCSLLEDKRSAVLRAEELETALMEM 472 (630)
Q Consensus 447 el~~lL~e~~~~~lr~~ele~~l~~m 472 (630)
+.|+.+|.+.++.|..+||..+|..+
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~ 114 (159)
T 3i5g_C 89 EAFKTFDREGQGLISSAEIRNVLKML 114 (159)
T ss_dssp HHHHHHCTTSSSEECHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCcCcHHHHHHHHHHh
Confidence 78999999999999999999988765
No 51
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.76 E-value=3e+02 Score=22.61 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 006813 478 RRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (630)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (630)
..++.++|..||.+++++|.-++..-..=+.++-|=+++|.|
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~E 71 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 71 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455777888889998888887765543345566666677666
No 52
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=23.56 E-value=3.7e+02 Score=23.48 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHh
Q 006813 464 ELETALMEMVKQDN------RRQLSARIEQLEQEVAELQQSL 499 (630)
Q Consensus 464 ele~~l~~m~~~d~------~~~l~~~~~~~~~~~~~~~~~~ 499 (630)
++=.+=+++|+.|+ |+++-.+.|+|+.++..|++-+
T Consensus 65 ~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 65 PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455678888886 6677777888888887776644
No 53
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.96 E-value=2.2e+02 Score=22.14 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006813 475 QDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLM 514 (630)
Q Consensus 475 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (630)
.+-...|..+++.|+++.++|+.-++.-+ .|.++|--||
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~-~E~~~Lk~ll 60 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLA-KEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34456678888888888888888876554 4455554443
No 54
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.80 E-value=1.1e+02 Score=22.36 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 006813 475 QDNRRQLSARIEQLEQEVAELQQSLA 500 (630)
Q Consensus 475 ~d~~~~l~~~~~~~~~~~~~~~~~~~ 500 (630)
++..+.|..++..||..+..|+..|+
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888877664
No 55
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.29 E-value=2.4e+02 Score=23.50 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=29.7
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006813 449 CSLLEDKRSAVLRAEELETALMEMVKQDNRRQLSARIEQLEQEVAELQQSLADK 502 (630)
Q Consensus 449 ~~lL~e~~~~~lr~~ele~~l~~m~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~ 502 (630)
.+.|-|+|. ..|..+|.| .++|-..|++|+.|++.|++.+..-
T Consensus 30 Wk~lAE~RR-----~AL~eaL~E------N~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 30 WKEVAEKRR-----KALYEALKE------NEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHH-----HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344545443 456667765 4678889999999999998766443
No 56
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.27 E-value=3.4e+02 Score=22.16 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 006813 477 NRRQLSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQE 519 (630)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (630)
...++.+++..||.++..+|+-++..-..=+..+-|=+++|.|
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~E 69 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIE 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3567788999999999999888765544445666666677765
No 57
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.04 E-value=2.4e+02 Score=20.45 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHH
Q 006813 481 LSARIEQLEQEVAELQQSLADKREQESAMI-QVL 513 (630)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 513 (630)
|.+|+..||.-.+||..-+|--| -|..|| |||
T Consensus 8 LE~r~k~le~~naeLEervstLq-~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQ-NENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHh
Confidence 44455555555555555554433 356665 444
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.00 E-value=4.2e+02 Score=23.19 Aligned_cols=79 Identities=11% Similarity=0.231 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006813 434 GRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMV--KQDNRRQLSARIEQLEQEVAELQQSLADKREQESAMIQ 511 (630)
Q Consensus 434 ~~~~~~q~~~l~~el~~lL~e~~~~~lr~~ele~~l~~m~--~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (630)
+.++.-++..|..|+--+...+ ..|+.+|.++= ..-....+.+++..||.++..+|+-++.--..=+.++-
T Consensus 38 i~elrr~iq~L~~el~~l~~~~-------~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQC-------ANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777776654443 33555554442 22344677888999999999999887654433355666
Q ss_pred HHHHHHHh
Q 006813 512 VLMKVEQE 519 (630)
Q Consensus 512 ~~~~~~~~ 519 (630)
|=|++|.|
T Consensus 111 vKl~Ld~E 118 (129)
T 3tnu_B 111 TKLALDVE 118 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66777665
No 59
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.85 E-value=92 Score=23.68 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 006813 480 QLSARIEQLEQEVAELQQSL 499 (630)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~ 499 (630)
.|.+|++.|.+++.||+.-|
T Consensus 30 eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 30 EMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776644
No 60
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.25 E-value=1.9e+02 Score=25.16 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q 006813 481 LSARIEQLEQEVAELQQSLADKRE 504 (630)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~~~~~~ 504 (630)
=++-|..|+..+++|++.|+|...
T Consensus 80 R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 80 RRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999765
No 61
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.13 E-value=3.7e+02 Score=22.21 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhHHHHhHHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006813 446 VELCSLLEDKRSAVLRAEELETALMEMVKQDNR------RQLSARIEQLEQEVAELQQSLADKREQESAMI 510 (630)
Q Consensus 446 ~el~~lL~e~~~~~lr~~ele~~l~~m~~~d~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (630)
.|+|.=|+.+....+--..|=.-=.+=.|..|. ..+.+..+.|.+|...|++-.+..++.=.++|
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777776665543331111111122221 23344445577777777777777766655543
Done!