Query 006814
Match_columns 630
No_of_seqs 418 out of 2160
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:52:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2310 DNA repair exonuclease 100.0 1E-134 3E-139 1078.9 43.6 572 8-618 9-593 (646)
2 TIGR00583 mre11 DNA repair pro 100.0 9.1E-92 2E-96 759.5 38.5 386 10-404 1-404 (405)
3 COG0420 SbcD DNA repair exonuc 100.0 3.5E-34 7.5E-39 310.8 26.5 261 13-325 1-274 (390)
4 PRK10966 exonuclease subunit S 100.0 3.1E-32 6.8E-37 296.9 31.7 316 13-403 1-347 (407)
5 PF04152 Mre11_DNA_bind: Mre11 100.0 5.1E-33 1.1E-37 270.7 10.5 154 302-455 1-175 (175)
6 PHA02546 47 endonuclease subun 100.0 2.5E-30 5.5E-35 276.3 31.8 232 13-320 1-242 (340)
7 TIGR00619 sbcd exonuclease Sbc 100.0 5.1E-28 1.1E-32 248.6 18.6 228 13-291 1-253 (253)
8 cd00840 MPP_Mre11_N Mre11 nucl 99.9 5.4E-26 1.2E-30 225.7 20.4 215 14-283 1-223 (223)
9 cd07385 MPP_YkuE_C Bacillus su 99.8 5.9E-18 1.3E-22 168.9 18.3 169 12-260 1-169 (223)
10 PRK11340 phosphodiesterase Yae 99.7 1.8E-16 4E-21 164.6 17.3 171 9-260 46-217 (271)
11 PRK11148 cyclic 3',5'-adenosin 99.6 1.2E-14 2.6E-19 151.0 18.7 87 8-131 10-98 (275)
12 PF12850 Metallophos_2: Calcin 99.6 3.2E-15 6.9E-20 140.1 7.5 74 218-299 81-155 (156)
13 cd07402 MPP_GpdQ Enterobacter 99.6 1.8E-14 3.9E-19 145.4 11.8 197 14-277 1-210 (240)
14 cd07400 MPP_YydB Bacillus subt 99.6 2.7E-14 5.9E-19 133.3 12.0 80 15-130 1-80 (144)
15 cd07395 MPP_CSTP1 Homo sapiens 99.5 5.2E-13 1.1E-17 137.3 20.5 228 10-309 2-262 (262)
16 PRK09453 phosphodiesterase; Pr 99.5 5.6E-13 1.2E-17 130.2 18.2 172 13-315 1-176 (182)
17 TIGR00040 yfcE phosphoesterase 99.5 3.6E-13 7.7E-18 128.5 14.2 52 244-303 105-156 (158)
18 cd07388 MPP_Tt1561 Thermus the 99.5 8.1E-13 1.8E-17 133.8 15.7 201 11-301 3-220 (224)
19 cd07394 MPP_Vps29 Homo sapiens 99.5 2.1E-12 4.5E-17 126.4 18.1 63 244-311 105-168 (178)
20 cd00841 MPP_YfcE Escherichia c 99.5 8.8E-13 1.9E-17 124.7 14.6 79 219-306 76-154 (155)
21 PF00149 Metallophos: Calcineu 99.4 1.2E-13 2.5E-18 126.0 5.5 79 13-132 1-79 (200)
22 cd07396 MPP_Nbla03831 Homo sap 99.4 1.1E-11 2.4E-16 128.4 19.0 86 13-133 1-88 (267)
23 cd07392 MPP_PAE1087 Pyrobaculu 99.4 1.1E-12 2.5E-17 126.6 10.8 176 15-275 1-188 (188)
24 PRK05340 UDP-2,3-diacylglucosa 99.4 5.1E-12 1.1E-16 129.0 15.2 81 13-132 1-84 (241)
25 cd07393 MPP_DR1119 Deinococcus 99.4 7.5E-12 1.6E-16 127.2 15.0 80 15-131 1-84 (232)
26 COG2129 Predicted phosphoester 99.4 3E-11 6.4E-16 120.7 18.5 203 11-306 2-223 (226)
27 cd07383 MPP_Dcr2 Saccharomyces 99.4 6.7E-12 1.4E-16 124.1 13.6 88 11-130 1-88 (199)
28 cd07401 MPP_TMEM62_N Homo sapi 99.4 1.8E-11 3.8E-16 126.4 16.7 46 15-66 2-48 (256)
29 COG0622 Predicted phosphoester 99.3 4.9E-11 1.1E-15 116.1 14.8 85 217-310 80-166 (172)
30 cd07399 MPP_YvnB Bacillus subt 99.3 1.4E-10 3E-15 116.5 17.6 80 13-129 1-80 (214)
31 TIGR03729 acc_ester putative p 99.3 2.6E-11 5.6E-16 123.5 12.0 74 14-131 1-74 (239)
32 TIGR01854 lipid_A_lpxH UDP-2,3 99.2 4.8E-11 1E-15 121.1 10.9 78 15-132 1-82 (231)
33 COG1408 Predicted phosphohydro 99.2 1.3E-10 2.8E-15 121.8 13.8 94 8-147 40-134 (284)
34 cd00839 MPP_PAPs purple acid p 99.1 2E-09 4.3E-14 112.2 17.4 81 10-133 2-83 (294)
35 cd07397 MPP_DevT Myxococcus xa 99.1 6.2E-10 1.4E-14 113.6 12.2 65 13-133 1-65 (238)
36 cd00845 MPP_UshA_N_like Escher 99.1 1.3E-09 2.8E-14 111.3 14.6 213 13-277 1-224 (252)
37 cd07378 MPP_ACP5 Homo sapiens 99.1 6E-09 1.3E-13 107.8 18.6 104 201-309 153-275 (277)
38 cd07404 MPP_MS158 Microscilla 99.1 9.2E-10 2E-14 105.5 10.6 42 15-67 1-42 (166)
39 COG1409 Icc Predicted phosphoh 99.1 2.1E-09 4.5E-14 110.5 14.0 80 13-133 1-80 (301)
40 PRK04036 DNA polymerase II sma 99.0 5.7E-09 1.2E-13 117.7 17.6 50 8-64 239-297 (504)
41 cd07379 MPP_239FB Homo sapiens 99.0 1.5E-09 3.3E-14 100.8 10.3 47 14-81 1-47 (135)
42 cd07386 MPP_DNA_pol_II_small_a 99.0 3.5E-09 7.5E-14 108.2 13.2 31 244-278 190-220 (243)
43 cd07391 MPP_PF1019 Pyrococcus 99.0 7.1E-10 1.5E-14 107.6 7.7 83 16-131 1-88 (172)
44 cd07410 MPP_CpdB_N Escherichia 99.0 1.1E-08 2.3E-13 106.6 15.1 218 13-277 1-247 (277)
45 PF14582 Metallophos_3: Metall 98.9 6.1E-09 1.3E-13 104.2 11.1 228 12-305 5-253 (255)
46 cd07390 MPP_AQ1575 Aquifex aeo 98.9 1.2E-08 2.7E-13 98.6 10.8 77 16-132 2-83 (168)
47 TIGR00024 SbcD_rel_arch putati 98.9 4.3E-09 9.3E-14 106.9 7.9 83 13-131 15-102 (225)
48 cd07398 MPP_YbbF-LpxH Escheric 98.8 5.2E-09 1.1E-13 104.0 7.6 43 16-64 1-43 (217)
49 cd07406 MPP_CG11883_N Drosophi 98.8 2.9E-08 6.3E-13 102.5 13.3 213 13-277 1-223 (257)
50 cd07411 MPP_SoxB_N Thermus the 98.8 5.6E-08 1.2E-12 100.7 13.8 226 13-298 1-248 (264)
51 cd07408 MPP_SA0022_N Staphyloc 98.8 2.4E-07 5.1E-12 95.7 17.5 217 13-276 1-231 (257)
52 cd07412 MPP_YhcR_N Bacillus su 98.8 1.2E-07 2.6E-12 99.6 15.4 218 13-276 1-259 (288)
53 cd00838 MPP_superfamily metall 98.7 5.9E-08 1.3E-12 86.4 9.8 69 16-129 1-69 (131)
54 cd08165 MPP_MPPE1 human MPPE1 98.7 4.3E-08 9.3E-13 94.0 8.3 86 16-131 1-89 (156)
55 cd07409 MPP_CD73_N CD73 ecto-5 98.6 4.5E-07 9.8E-12 94.9 14.5 200 13-258 1-219 (281)
56 PLN02533 probable purple acid 98.6 5E-07 1.1E-11 100.1 14.0 75 10-131 137-211 (427)
57 COG2908 Uncharacterized protei 98.6 6.6E-08 1.4E-12 97.8 6.1 79 16-133 1-82 (237)
58 KOG2679 Purple (tartrate-resis 98.6 9E-07 2E-11 90.6 14.0 245 8-310 39-318 (336)
59 KOG1432 Predicted DNA repair e 98.5 7.3E-07 1.6E-11 93.9 12.9 103 7-142 48-158 (379)
60 cd07384 MPP_Cdc1_like Saccharo 98.5 1.8E-07 3.8E-12 91.2 7.4 90 16-131 1-100 (171)
61 cd07403 MPP_TTHA0053 Thermus t 98.5 2.9E-07 6.4E-12 85.4 8.0 33 16-62 1-33 (129)
62 PTZ00422 glideosome-associated 98.5 1.5E-05 3.2E-10 87.0 21.8 101 217-321 213-328 (394)
63 cd07405 MPP_UshA_N Escherichia 98.4 1.3E-05 2.9E-10 84.1 18.5 201 13-259 1-223 (285)
64 cd08164 MPP_Ted1 Saccharomyces 98.4 4.3E-06 9.3E-11 83.0 13.3 24 48-71 41-64 (193)
65 PRK09419 bifunctional 2',3'-cy 98.4 5.2E-06 1.1E-10 102.5 15.7 212 10-276 658-897 (1163)
66 cd08163 MPP_Cdc1 Saccharomyces 98.3 5.3E-06 1.1E-10 86.1 12.9 57 48-133 42-99 (257)
67 COG1407 Predicted ICC-like pho 98.3 1.8E-06 4E-11 87.7 7.5 57 12-68 19-80 (235)
68 cd00842 MPP_ASMase acid sphing 98.3 2.7E-06 5.8E-11 89.3 9.0 66 34-132 49-123 (296)
69 PHA02239 putative protein phos 98.2 5.8E-06 1.3E-10 84.7 8.5 53 13-77 1-55 (235)
70 COG0737 UshA 5'-nucleotidase/2 98.1 0.00025 5.3E-09 80.6 21.0 238 6-300 20-280 (517)
71 cd07407 MPP_YHR202W_N Saccharo 98.0 7.4E-05 1.6E-09 78.6 14.3 56 217-277 188-248 (282)
72 COG1311 HYS2 Archaeal DNA poly 98.0 1.4E-05 3E-10 88.0 8.2 54 7-64 220-275 (481)
73 PRK09558 ushA bifunctional UDP 97.9 0.00015 3.2E-09 83.0 14.8 207 6-258 28-258 (551)
74 PRK00166 apaH diadenosine tetr 97.9 2.3E-05 4.9E-10 82.2 7.2 67 13-130 1-68 (275)
75 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.9 9.9E-05 2.1E-09 76.9 11.8 39 15-64 1-41 (262)
76 cd07387 MPP_PolD2_C PolD2 (DNA 97.9 0.00072 1.6E-08 70.3 17.6 46 14-66 1-57 (257)
77 cd08166 MPP_Cdc1_like_1 unchar 97.9 5.6E-05 1.2E-09 75.3 8.8 56 47-131 38-93 (195)
78 cd08162 MPP_PhoA_N Synechococc 97.8 0.00031 6.7E-09 75.0 15.0 47 13-65 1-52 (313)
79 cd07425 MPP_Shelphs Shewanella 97.8 3.3E-05 7.1E-10 77.6 7.1 72 16-131 1-80 (208)
80 PRK09419 bifunctional 2',3'-cy 97.8 0.00038 8.3E-09 86.3 17.9 55 11-65 40-99 (1163)
81 PRK09418 bifunctional 2',3'-cy 97.8 0.00054 1.2E-08 81.2 17.3 56 10-65 37-97 (780)
82 TIGR01530 nadN NAD pyrophospha 97.8 0.00033 7.1E-09 80.3 14.4 197 13-258 1-219 (550)
83 KOG3662 Cell division control 97.8 0.00014 2.9E-09 79.4 10.6 100 6-135 42-148 (410)
84 PRK11907 bifunctional 2',3'-cy 97.8 0.0013 2.8E-08 78.2 19.5 55 11-65 114-173 (814)
85 TIGR01390 CycNucDiestase 2',3' 97.7 0.00045 9.8E-09 80.3 15.4 54 12-65 2-60 (626)
86 COG4186 Predicted phosphoester 97.7 0.0004 8.7E-09 66.3 11.6 43 217-259 107-150 (186)
87 PRK09420 cpdB bifunctional 2', 97.7 0.0013 2.8E-08 76.8 18.1 56 10-65 23-83 (649)
88 cd07424 MPP_PrpA_PrpB PrpA and 97.7 7.4E-05 1.6E-09 74.7 6.4 42 13-66 1-43 (207)
89 cd07423 MPP_PrpE Bacillus subt 97.6 8.9E-05 1.9E-09 75.6 6.7 54 13-82 1-64 (234)
90 cd00144 MPP_PPP_family phospho 97.5 0.00017 3.8E-09 72.1 6.3 67 17-131 2-68 (225)
91 PRK11439 pphA serine/threonine 97.3 0.00027 5.9E-09 71.4 5.7 52 13-80 17-69 (218)
92 cd07422 MPP_ApaH Escherichia c 97.3 0.00036 7.8E-09 72.5 6.7 66 15-131 1-67 (257)
93 TIGR03767 P_acnes_RR metalloph 97.3 0.0042 9.1E-08 69.5 15.2 106 200-316 323-451 (496)
94 PRK09968 serine/threonine-spec 97.3 0.00035 7.6E-09 70.7 6.1 43 14-68 16-59 (218)
95 PRK13625 bis(5'-nucleosyl)-tet 97.3 0.00041 8.9E-09 71.4 6.4 53 13-77 1-62 (245)
96 KOG1378 Purple acid phosphatas 97.2 0.0041 8.9E-08 68.8 12.6 79 8-132 143-222 (452)
97 COG1768 Predicted phosphohydro 97.2 0.0026 5.6E-08 62.2 9.6 41 217-257 158-199 (230)
98 TIGR00668 apaH bis(5'-nucleosy 97.1 0.0012 2.5E-08 69.4 6.8 53 13-81 1-54 (279)
99 cd07413 MPP_PA3087 Pseudomonas 96.9 0.0018 3.9E-08 65.7 6.3 50 16-81 2-59 (222)
100 cd07382 MPP_DR1281 Deinococcus 96.9 0.021 4.5E-07 59.4 14.2 190 14-276 1-197 (255)
101 cd07421 MPP_Rhilphs Rhilph pho 96.8 0.0045 9.7E-08 65.5 8.3 52 14-81 3-60 (304)
102 KOG3325 Membrane coat complex 96.7 0.0037 7.9E-08 59.3 6.5 81 217-303 78-162 (183)
103 smart00156 PP2Ac Protein phosp 96.4 0.0072 1.6E-07 63.3 7.3 52 13-76 28-79 (271)
104 TIGR00282 metallophosphoestera 96.2 0.083 1.8E-06 55.3 13.8 188 13-272 1-196 (266)
105 PF09587 PGA_cap: Bacterial ca 96.2 0.1 2.2E-06 53.8 14.2 202 14-259 1-230 (250)
106 KOG3770 Acid sphingomyelinase 96.2 0.017 3.8E-07 65.5 9.1 94 11-131 137-263 (577)
107 cd07381 MPP_CapA CapA and rela 96.0 0.073 1.6E-06 54.3 11.7 133 117-258 76-220 (239)
108 cd07416 MPP_PP2B PP2B, metallo 96.0 0.019 4.1E-07 61.2 7.6 51 13-75 43-93 (305)
109 PF04042 DNA_pol_E_B: DNA poly 95.8 0.0071 1.5E-07 60.2 3.5 47 15-68 1-48 (209)
110 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.5 0.024 5.3E-07 59.9 6.2 49 14-74 43-91 (285)
111 smart00854 PGA_cap Bacterial c 95.3 0.2 4.3E-06 51.2 12.0 132 117-258 72-218 (239)
112 cd07414 MPP_PP1_PPKL PP1, PPKL 95.3 0.038 8.2E-07 58.6 6.8 49 14-74 51-99 (293)
113 PTZ00480 serine/threonine-prot 95.3 0.032 7E-07 59.8 6.3 48 14-73 60-107 (320)
114 PTZ00239 serine/threonine prot 94.6 0.067 1.4E-06 57.1 6.4 49 14-74 44-92 (303)
115 PTZ00244 serine/threonine-prot 94.4 0.068 1.5E-06 56.8 6.0 47 15-73 54-100 (294)
116 cd07418 MPP_PP7 PP7, metalloph 94.3 0.097 2.1E-06 57.4 6.9 49 14-74 67-116 (377)
117 TIGR03768 RPA4764 metallophosp 94.2 0.21 4.5E-06 55.9 9.3 112 9-132 33-171 (492)
118 cd07420 MPP_RdgC Drosophila me 94.1 0.12 2.6E-06 55.5 7.0 49 14-74 52-101 (321)
119 cd07417 MPP_PP5_C PP5, C-termi 94.0 0.11 2.3E-06 55.9 6.5 53 12-76 59-112 (316)
120 cd07380 MPP_CWF19_N Schizosacc 94.0 0.14 3.1E-06 49.1 6.6 46 48-129 23-68 (150)
121 cd07419 MPP_Bsu1_C Arabidopsis 93.7 0.17 3.7E-06 54.2 7.3 50 14-75 49-106 (311)
122 KOG2863 RNA lariat debranching 93.3 0.17 3.7E-06 54.4 6.3 24 110-133 67-90 (456)
123 PF05918 API5: Apoptosis inhib 90.3 0.084 1.8E-06 60.4 0.0 9 522-530 458-466 (556)
124 KOG3428 Small nuclear ribonucl 88.2 0.23 5E-06 44.6 1.3 15 584-598 95-109 (109)
125 PF05918 API5: Apoptosis inhib 88.0 0.69 1.5E-05 53.1 5.2 13 39-51 60-72 (556)
126 KOG4419 5' nucleotidase [Nucle 86.5 2.7 5.9E-05 48.3 8.7 58 9-66 39-102 (602)
127 KOG3947 Phosphoesterases [Gene 76.8 40 0.00087 35.7 12.3 45 5-67 54-98 (305)
128 PTZ00235 DNA polymerase epsilo 75.1 8.4 0.00018 40.9 7.0 47 10-64 25-76 (291)
129 KOG2476 Uncharacterized conser 71.5 11 0.00024 42.2 7.1 94 13-155 6-100 (528)
130 PF09423 PhoD: PhoD-like phosp 68.1 5.9 0.00013 44.4 4.4 44 10-65 103-146 (453)
131 TIGR01769 GGGP geranylgeranylg 62.9 27 0.00059 35.3 7.5 57 38-132 11-67 (205)
132 PF06874 FBPase_2: Firmicute f 60.7 8.2 0.00018 44.9 3.7 37 42-82 175-211 (640)
133 KOG3428 Small nuclear ribonucl 54.6 6.6 0.00014 35.5 1.3 11 584-594 99-109 (109)
134 KOG3973 Uncharacterized conser 51.1 85 0.0018 34.2 9.0 27 432-459 210-236 (465)
135 TIGR01768 GGGP-family geranylg 48.7 50 0.0011 33.9 6.7 54 40-132 16-69 (223)
136 PRK09982 universal stress prot 47.7 40 0.00087 31.2 5.5 19 40-58 92-110 (142)
137 KOG0374 Serine/threonine speci 47.1 27 0.00059 37.9 4.8 46 14-71 60-106 (331)
138 COG1646 Predicted phosphate-bi 47.0 59 0.0013 33.7 6.8 55 40-132 30-84 (240)
139 KOG0372 Serine/threonine speci 46.7 39 0.00084 35.3 5.5 47 15-73 45-91 (303)
140 KOG0373 Serine/threonine speci 46.5 42 0.00091 34.5 5.6 55 15-81 48-102 (306)
141 PTZ00070 40S ribosomal protein 46.4 13 0.00029 38.6 2.2 8 590-597 21-28 (257)
142 PF01884 PcrB: PcrB family; I 45.9 43 0.00094 34.5 5.8 52 41-132 22-73 (230)
143 PF07451 SpoVAD: Stage V sporu 43.0 30 0.00065 37.2 4.2 20 48-68 69-88 (329)
144 PTZ00034 40S ribosomal protein 42.2 20 0.00044 33.3 2.5 13 456-468 4-16 (124)
145 PF07355 GRDB: Glycine/sarcosi 40.7 59 0.0013 35.6 6.1 52 10-71 48-99 (349)
146 TIGR02667 moaB_proteo molybden 39.9 94 0.002 30.0 6.9 41 34-74 45-87 (163)
147 PRK04169 geranylgeranylglycery 38.1 85 0.0018 32.4 6.5 49 44-132 25-74 (232)
148 COG3855 Fbp Uncharacterized pr 36.4 38 0.00082 38.2 3.8 34 45-82 184-217 (648)
149 cd07389 MPP_PhoD Bacillus subt 36.1 64 0.0014 32.1 5.3 18 116-133 87-104 (228)
150 PRK15005 universal stress prot 33.8 93 0.002 28.2 5.6 19 40-58 96-114 (144)
151 PF00072 Response_reg: Respons 33.7 63 0.0014 27.5 4.2 52 40-130 32-83 (112)
152 KOG0835 Cyclin L [General func 33.4 90 0.002 33.9 5.9 12 551-562 290-301 (367)
153 cd02812 PcrB_like PcrB_like pr 32.0 1.3E+02 0.0028 30.9 6.6 55 40-132 14-68 (219)
154 PRK09968 serine/threonine-spec 31.5 41 0.0009 33.9 3.0 30 245-278 179-208 (218)
155 PHA01794 hypothetical protein 30.7 89 0.0019 29.3 4.7 18 442-459 49-66 (134)
156 KOG1432 Predicted DNA repair e 30.6 7.8E+02 0.017 27.3 14.0 60 14-82 103-162 (379)
157 cd00886 MogA_MoaB MogA_MoaB fa 30.4 2.4E+02 0.0052 26.7 7.9 41 35-75 44-86 (152)
158 COG2248 Predicted hydrolase (m 30.4 62 0.0014 34.0 4.0 60 10-83 174-235 (304)
159 TIGR00640 acid_CoA_mut_C methy 29.2 2E+02 0.0044 26.8 7.1 40 38-81 40-79 (132)
160 PRK10116 universal stress prot 29.1 1.4E+02 0.0031 27.0 6.0 20 40-59 91-110 (142)
161 KOG3293 Small nuclear ribonucl 28.9 47 0.001 30.8 2.6 9 491-499 73-81 (134)
162 TIGR01501 MthylAspMutase methy 28.7 2E+02 0.0044 27.1 6.9 40 39-82 40-79 (134)
163 PF00582 Usp: Universal stress 28.2 1.3E+02 0.0028 26.0 5.3 23 39-61 90-112 (140)
164 TIGR01917 gly_red_sel_B glycin 28.2 1.4E+02 0.0031 33.5 6.6 51 9-69 43-93 (431)
165 KOG2310 DNA repair exonuclease 28.0 65 0.0014 37.2 4.0 29 455-483 481-509 (646)
166 TIGR01918 various_sel_PB selen 27.9 1.5E+02 0.0031 33.5 6.6 50 10-69 44-93 (431)
167 KOG1855 Predicted RNA-binding 27.8 1.2E+02 0.0026 34.1 5.8 33 426-458 245-279 (484)
168 PF10686 DUF2493: Protein of u 26.1 1.7E+02 0.0036 24.5 5.3 39 11-60 2-40 (71)
169 cd07424 MPP_PrpA_PrpB PrpA and 26.1 55 0.0012 32.5 2.8 30 245-278 168-197 (207)
170 PRK11475 DNA-binding transcrip 26.0 1.4E+02 0.0031 29.9 5.8 40 39-81 25-64 (207)
171 PTZ00034 40S ribosomal protein 25.8 54 0.0012 30.6 2.4 8 590-597 116-123 (124)
172 cd02071 MM_CoA_mut_B12_BD meth 25.6 2.1E+02 0.0046 25.9 6.4 38 40-81 39-76 (122)
173 cd02067 B12-binding B12 bindin 25.6 2.5E+02 0.0054 25.0 6.8 40 39-82 38-77 (119)
174 KOG3973 Uncharacterized conser 25.3 49 0.0011 36.0 2.3 10 555-564 329-338 (465)
175 TIGR01648 hnRNP-R-Q heterogene 23.0 98 0.0021 36.3 4.4 11 426-436 247-257 (578)
176 TIGR02855 spore_yabG sporulati 21.8 97 0.0021 32.8 3.7 79 41-124 143-240 (283)
177 cd02072 Glm_B12_BD B12 binding 21.0 6.2E+02 0.013 23.7 8.5 40 39-82 38-77 (128)
178 cd00758 MoCF_BD MoCF_BD: molyb 21.0 1.6E+02 0.0035 27.1 4.7 29 35-64 43-71 (133)
179 cd00019 AP2Ec AP endonuclease 20.8 3.5E+02 0.0076 27.8 7.7 70 12-83 59-129 (279)
180 KOG3818 DNA polymerase epsilon 20.7 3.3E+02 0.0072 30.9 7.5 89 13-133 283-371 (525)
No 1
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-134 Score=1078.94 Aligned_cols=572 Identities=51% Similarity=0.856 Sum_probs=506.3
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCC
Q 006814 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (630)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~ 87 (630)
+-+++||||++||+||||.++|++|++|+|.||+||+++|.+++|||||++|||||+|+||++++++++++||+||+||+
T Consensus 9 D~entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdk 88 (646)
T KOG2310|consen 9 DFENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDK 88 (646)
T ss_pred ccccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCC
Confidence 33899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeechhhhhccc-ccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCcccee
Q 006814 88 PVQFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEIT 166 (630)
Q Consensus 88 p~~~~~lsd~~~~f~~-~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~ 166 (630)
||+||+||||++||.+ .|++|||+|||+|++||||.||||||+|+|.+.+||||+|+.+|||||||++ +.+++|.
T Consensus 89 P~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~----~~id~I~ 164 (646)
T KOG2310|consen 89 PVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKV----SEIDKID 164 (646)
T ss_pred ceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccc----cCcceEE
Confidence 9999999999999986 5999999999999999999999999999999999999999999999999996 3678999
Q ss_pred EEEEEEeeCCeeEEEEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCCCC
Q 006814 167 VYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246 (630)
Q Consensus 167 ~~Pi~l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~i~e~~l~~~~ 246 (630)
+.||+++||.++|||||||+++|+||.++|.+ ++|.|++|+.. .++|||+|++|||+..|++++++|++++|.|+
T Consensus 165 vsPiLlqKG~tklALYGLg~irDeRL~R~Fk~-~~V~f~rPe~~----e~dWFNllvlHQNr~~h~~tn~lpE~flp~F~ 239 (646)
T KOG2310|consen 165 VSPILLQKGSTKLALYGLGSIRDERLYRMFKN-GKVTFLRPEEY----EDDWFNLLVLHQNRSKHRPTNFLPEQFLPDFL 239 (646)
T ss_pred EEeeeeccCceeEEEeeccccchHHHHHHHHh-CceEEecCccc----cccceeeEEEeecccCCCCcccCcHhHhhhhh
Confidence 99999999999999999999999999999998 78999999864 37999999999999999999999999999999
Q ss_pred cEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCCceEEEEEECCCCCcEEEEEEEeecCC
Q 006814 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEA 326 (630)
Q Consensus 247 DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~~~~~e~IpL~tvRpf~~~ei~L~~~~ 326 (630)
|+|+|||+|+|.+.|++++.++|+|+||||+++||+++||+.+|+|+||+|.|+++..++|||.|||||++.+|.|++..
T Consensus 240 DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~d~~ 319 (646)
T KOG2310|consen 240 DLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLADHP 319 (646)
T ss_pred hheeeccccccccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceecceeeeeeEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C----CCCCCHhHHHHHHHHHHHHHHHHhhhccccc-ccCCCCEEEEEEeecc-ccccChhhHhhHhhhcccCccceEEE
Q 006814 327 D----IDPDDQNSILEHLDKVVRNLIERSSKKTVNR-SELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVANPQDILIF 400 (630)
Q Consensus 327 ~----~~~~~~~~v~~~l~~~v~~li~~a~~~~~~~-~~~~~PLiRLrV~~~g-~~~~n~~rfg~~f~~~vaNp~dil~f 400 (630)
+ +.|.....+.+++.++|++||+.|..++..+ .++++|||||||+|+| |+++||+|||++|+|+||||+||++|
T Consensus 320 ~~~~~i~p~~~~~i~~~~~e~veemI~~A~~q~~~~~~~p~lPLIRLrVdYsg~~~~~n~~RFs~rfvgrVAN~~Dvv~f 399 (646)
T KOG2310|consen 320 DILNPIRPKVTDGILSFLIEKVEEMIETAEAQRLGRSGQPELPLIRLRVDYSGDFEPFNPQRFSQRFVGRVANPQDVVQF 399 (646)
T ss_pred ccccCCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEecCCccccCHHHHhHhhhhcccChhheEEE
Confidence 7 7788888899999999999999998766443 4699999999999998 89999999999999999999999999
Q ss_pred EecccccccccccccccccCcccchhhhHHHHHHhh----cccccccCCCcHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 006814 401 SKSSKKSKAEAKIDDFERLRPEELNQQNIEALVAEN----NLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQYNLQETR 476 (630)
Q Consensus 401 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~----~~~l~~l~~~~l~~a~~~fv~k~d~~a~~~~v~~~~~~~~ 476 (630)
+|++|+.+++....+.+.++++++++++++.||.++ +.+|.+|++.+|++||++||+|||++||++||+++|++++
T Consensus 400 ~k~~kk~rte~~~~~t~~~~~~e~~~~~ve~Lvn~y~~~~n~ql~lL~~~gl~eal~~fv~kdek~A~~~~V~~~iek~~ 479 (646)
T KOG2310|consen 400 SKKRKKTRTEEVNNGTEALRPEEGNQLRVETLVNQYTAESNVQLSLLPERGLGEALQEFVDKDEKDAFEECVKYQIEKVQ 479 (646)
T ss_pred eecccccccccccccchhccccccchhhHHHHHhhhhhccccceeeeccccHHHHHHHHhhhhhHHHHHHHHHHHHHhcc
Confidence 998887777666677788889999999999999554 7899999999999999999999999999999999999884
Q ss_pred HHHhhcCCccccchhhHHHHHHHHHHHHHhh--hcCCCCCCCCCCcccccccccccccccCcccceeccCCcccccccCc
Q 006814 477 HKIAKDSDTAKFEEEDIILKVGESLEERLKE--RSNHSKDAPQSTSNAASFEDIRSKTAAGVGTAISFSDDEDTTQISDT 554 (630)
Q Consensus 477 ~~~~~~~~~~~~~~~d~i~~~~~~~~er~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~e~~~~~~~~ 554 (630)
+ +.+++.+.++.+++.|.|+. +.++...+++ -.+++..+.++..+. ..+|++|.....|+.
T Consensus 480 ~----------~~~~~~~~~~~E~i~~~lk~~~r~~~~~~t~~-~e~~e~~e~~~~~~~------~~~s~~e~~~~~s~~ 542 (646)
T KOG2310|consen 480 R----------FNEEDHIDKVEENIDEELKRFKRATRKRGTNP-KEDDETREALTEGSA------LRSSNEESASGFSSD 542 (646)
T ss_pred c----------cchhhhcchHHHHHHHHHHHHHhhhccCCCCc-Cchhhhhhhhccccc------ccccccccccccCcc
Confidence 3 45688899999999999888 6666665555 333455555544432 467777777777777
Q ss_pred cccccCCcccccccccccccccccCccCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 006814 555 KSATRGRKWSSAASRSSRGALESDKSKTSTRGRGRGRGRGRGRGANNLKQTTLDASLGFRQSQS 618 (630)
Q Consensus 555 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (630)
-.-..++-.||++.-| +.....++|||||||++..++.+++-|+||+..+.
T Consensus 543 ~~~s~~~~~S~~~~~~-------------~~s~~pt~~rgr~r~~~~~r~~~~~ss~g~s~~~~ 593 (646)
T KOG2310|consen 543 LLMSHEELGSSIANDS-------------SVSAAPTKGRGRGRGRRGKRGQNSDSSLGFSRTRA 593 (646)
T ss_pred cccccchhhhhhcccc-------------chhcCCCcccccccccccccCCccccccchhhhcc
Confidence 7776676666664322 22233344444444444444556677777777644
No 2
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=100.00 E-value=9.1e-92 Score=759.51 Aligned_cols=386 Identities=49% Similarity=0.889 Sum_probs=356.2
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcc
Q 006814 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~ 89 (630)
+++|||||+||||||+.+.++.|++|++.+|++|+++|++++||+||++|||||.+.||.+++++++++|++||+||+||
T Consensus 1 ~~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~ 80 (405)
T TIGR00583 1 EDTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPC 80 (405)
T ss_pred CCceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeechhhhhccc-ccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeEE
Q 006814 90 QFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (630)
Q Consensus 90 ~~~~lsd~~~~f~~-~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~ 168 (630)
+|++|||++.+|.. .|+.+||+|||++++||||+||||||+|.+.+.++++++|+.+|++++||+.. ..+.+.+.
T Consensus 81 ~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~~~~~~~l~lL~~~Glvnifgk~~----~~~~i~~~ 156 (405)
T TIGR00583 81 ELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGLLCALDLLHATGLVNYFGKVP----EIDNIIVS 156 (405)
T ss_pred chhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccccccccHHHHHHhCCCEEEecccc----ccccceee
Confidence 99999999999984 89999999999999999999999999999877789999999999999999853 34678889
Q ss_pred EEEEeeCCeeEEEEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCCCCcE
Q 006814 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (630)
Q Consensus 169 Pi~l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~i~e~~l~~~~Dy 248 (630)
|+++++|.++++|||+||++++++.++|.+ .++.++.|... .++||||+++||++.++.+.+++++++++.++||
T Consensus 157 Pvll~kg~~~valyGl~~~~d~rl~~~f~~-~~v~~~~p~~~----~~~~fnIlv~Hq~~~~~~~~~~ipe~llp~~fDY 231 (405)
T TIGR00583 157 PILLQKGETKLALYGISNVRDERLVRTFKD-NKVSFLRPNAG----AEDWFNLLVLHQNHAAHTSTSFLPESFIPDFFDL 231 (405)
T ss_pred eEEEecCCeeEEEecCCCCCHHHHHHHhhc-cchhhhccccC----CCCceEEEEeCceecCCCCcccCchhhhhccCcE
Confidence 999999999999999999999999999987 47888887632 3589999999999988877788999999999999
Q ss_pred EEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCCceEEEEEECCCCCcEEEEEEEeecCCCC
Q 006814 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEADI 328 (630)
Q Consensus 249 Va~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~~~~~e~IpL~tvRpf~~~ei~L~~~~~~ 328 (630)
|||||+|+|++.|+..+.++++|+||||++++||+++|..+|||++|+|+++.+++++|||+++|||++.+++|++..++
T Consensus 232 ValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~l~~~~~~ 311 (405)
T TIGR00583 232 VIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEILLDKVPGS 311 (405)
T ss_pred EEecccccccccccccCCCCceEEECCCcccccccccccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEEhhhcccc
Confidence 99999999999888777667899999999999999999999999999999989999999999999999999999987654
Q ss_pred CC----CCHhHHHHHHHHHHHHHHHHhhhcccc---------cccCCCCEEEEEEeecc----ccccChhhHhhHhhhcc
Q 006814 329 DP----DDQNSILEHLDKVVRNLIERSSKKTVN---------RSELKLPLVRIKVDYSG----FMTINPQRFGQKYVGKV 391 (630)
Q Consensus 329 ~~----~~~~~v~~~l~~~v~~li~~a~~~~~~---------~~~~~~PLiRLrV~~~g----~~~~n~~rfg~~f~~~v 391 (630)
.+ ++++++.++|.+.|++||++|++++.. ..++++|||||||+||| |+++||+||||+|+|+|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~~~~n~~rf~~~~~~~v 391 (405)
T TIGR00583 312 RPILKTDNKKETDKRLIDEVEEMINEANAEWKAKRADGEGDEPREPPLPLIRLKVDYTGPWLNYQVENPKRFSNRFVGRV 391 (405)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCceEEEEEEecCCCCCccccChhHHhhhhcccc
Confidence 43 557889999999999999999876522 35789999999999996 89999999999999999
Q ss_pred cCccceEEEEecc
Q 006814 392 ANPQDILIFSKSS 404 (630)
Q Consensus 392 aNp~dil~f~k~~ 404 (630)
|||+|||+|+|++
T Consensus 392 an~~d~~~~~~~~ 404 (405)
T TIGR00583 392 ANANDVVQFYKNN 404 (405)
T ss_pred cChhHeEEEEecC
Confidence 9999999999864
No 3
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-34 Score=310.82 Aligned_cols=261 Identities=32% Similarity=0.469 Sum_probs=187.5
Q ss_pred cEEEEEcCCCCC-CCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccce
Q 006814 13 VRILVATDCHLG-YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (630)
Q Consensus 13 mKILh~SD~HLG-~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~ 91 (630)
|||||+|||||| +..+.+.|.+|.+.+|+++++.|++++|||||+||||||+++|+.+++.++++.|+++|
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~-------- 72 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLK-------- 72 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhc--------
Confidence 899999999999 66677899999999999999999999999999999999999999999999999999986
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccc--eeecCCCccceeEEE
Q 006814 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGK--MVLGGSGVGEITVYP 169 (630)
Q Consensus 92 ~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~--~~l~~~~~~~i~~~P 169 (630)
..+||||+|+||||.+.+....+++.++...+++.+.+. ... .. ..+...|
T Consensus 73 ------------------------~~~Ipv~~I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~ 125 (390)
T COG0420 73 ------------------------DAGIPVVVIAGNHDSPSRLSEASPLLLLNNLGLHGVVGRLVHEI-RP--PEIVAAP 125 (390)
T ss_pred ------------------------cCCCcEEEecCCCCchhccccccchHHHHcCCceeecccceecc-cc--cchhcce
Confidence 468999999999999998877776666777776665552 110 00 0111456
Q ss_pred EEEeeCCeeEE-EEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCC--CC--Ccccc-c--ccc
Q 006814 170 ILIRKGSTAVA-LYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVK--TN--PKNAI-N--EHF 241 (630)
Q Consensus 170 i~l~kg~~~va-lyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~--~~--~~~~i-~--e~~ 241 (630)
.++......+. ++|..+............ .....+.| .+.++|+++|+.... .. +...+ . -+.
T Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~ 196 (390)
T COG0420 126 WLIPGPDPDVVFFLGLNGLEKEQFELLLHK-GLLSALDP--------DDDPSILVLHQSIDALTSGAERDLALGTVDLSL 196 (390)
T ss_pred eeeccCCCcceeeeccCCchHHHHHHHHhH-hHHhhcCC--------ccCceeeehhhhhcccccCCccceEEccccccc
Confidence 66655455555 888887766544332200 00111111 156899999997441 11 11111 1 356
Q ss_pred CCCC-CcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCCc-eEEEEEECCCCCcEEEEE
Q 006814 242 LPRF-LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-YRPTKIPLTSVRPFEYTE 319 (630)
Q Consensus 242 l~~~-~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~~-~~~e~IpL~tvRpf~~~e 319 (630)
++.. |||||+||+|.++.. ......|+||||+++++|.| +...|++.+|+++++. +.++.+++ +++...+
T Consensus 197 ~~~~~~~YvALGHiH~~~~~----~~~~~~i~y~GS~~~~~f~E-~~~~k~~~~v~~~~~~~~~~~~~~~---~~~~~~~ 268 (390)
T COG0420 197 LPKGGFDYVALGHIHKRQVI----PKEDPPIVYPGSPERYSFGE-EGERKGVVLVEFSGGKLWRFEELFV---PLFERLE 268 (390)
T ss_pred ccCCCcceEEcCCccccccc----CCCCCceecCCCceecchhH-cCCcccEEEEEecCCceeeeccccc---cccCceE
Confidence 6766 999999999997653 33334688999999999987 4678999999999884 44554444 4444445
Q ss_pred EEeecC
Q 006814 320 IILKDE 325 (630)
Q Consensus 320 i~L~~~ 325 (630)
+.....
T Consensus 269 ~~~~~~ 274 (390)
T COG0420 269 VDVLNG 274 (390)
T ss_pred EEEeec
Confidence 555443
No 4
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=100.00 E-value=3.1e-32 Score=296.95 Aligned_cols=316 Identities=20% Similarity=0.275 Sum_probs=208.1
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcccee
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
|||||+||||||....+..+..+....++++++++++++||+||++|||||...|+......+.+++.++.
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~--------- 71 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQ--------- 71 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHH---------
Confidence 89999999999987655556666667789999999999999999999999998887654433334444431
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeEEEEEE
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILI 172 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi~l 172 (630)
+.++|||+|+||||.+.... .+.++|...| |.+++... ......|+.+
T Consensus 72 -----------------------~~~~~v~~I~GNHD~~~~l~--~~~~~l~~~g-i~vl~~~~------~~~~~~~v~l 119 (407)
T PRK10966 72 -----------------------QTGCQLVVLAGNHDSVATLN--ESRDLLAFLN-TTVIASAS------DDLGHQVIIL 119 (407)
T ss_pred -----------------------hcCCcEEEEcCCCCChhhhh--hHHHHHHHCC-cEEEeccc------ccCCcceEEE
Confidence 34689999999999876533 2446777665 44554321 1223356666
Q ss_pred ee--CCeeEEEEecCCCChHHHHhhhcCh----------hHHhh-cCh---hhhhh--hcCCCceEEEEEccCCCCCCC-
Q 006814 173 RK--GSTAVALYGLGNIRDERLNRMFQTP----------HAVQW-MRP---EAQEE--CQVSDWFNILVLHQNRVKTNP- 233 (630)
Q Consensus 173 ~k--g~~~valyGl~~i~derl~~~f~~~----------~~v~~-l~p---~~~~~--~~~~~~fnIlvlHq~~~~~~~- 233 (630)
.. |...+.+|++||.+...+...+... ..+.. +.. ..... .-.++..||++.|+.+.+...
T Consensus 120 ~~~~g~~~~~i~~lPy~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I~~aH~~v~g~~~~ 199 (407)
T PRK10966 120 PRRDGTPGAVLCAIPFLRPRDVITSQAGQSGIEKQQALQAAIADHYQQLYQLACELRDELGQPLPIIATGHLTTVGASKS 199 (407)
T ss_pred ecCCCCeeeEEEECCCCCHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeEEEcCCccc
Confidence 54 3345679999999987766544210 00110 000 00000 001356799999988765321
Q ss_pred ----------ccccccccCCCCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCC-ce
Q 006814 234 ----------KNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKEN-QY 302 (630)
Q Consensus 234 ----------~~~i~e~~l~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~-~~ 302 (630)
...++.+.++. +||||+||+|++| .+.+ ...|+|||||+++||+|. ...|+|++|+++.+ .+
T Consensus 200 ~sEr~~~vGg~~~v~~~~f~~-~dYvALGHlH~~Q----~v~~-~~~vrYsGSpl~~sFsE~-~~~K~v~lVel~~~~~~ 272 (407)
T PRK10966 200 DSVRDIYIGTLDAFPAQAFPP-ADYIALGHIHRAQ----KVGG-TEHIRYSGSPIPLSFDEL-GKSKSVHLVEFDQGKLQ 272 (407)
T ss_pred CCeeEeeecCCceecHHHCCc-cCeeeccccccCc----CCCC-CCcEEEcCCCCCCCcccc-CCCCeEEEEEEcCCccc
Confidence 23456667776 7999999999964 4532 357999999999999973 45799999999865 47
Q ss_pred EEEEEECCCCCcEEEEEEEeecCCCCCCCCHhHHHHHHHHHHHHHHHHhhhcccccccCCCCEEEEEEeeccccccChhh
Q 006814 303 RPTKIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPLVRIKVDYSGFMTINPQR 382 (630)
Q Consensus 303 ~~e~IpL~tvRpf~~~ei~L~~~~~~~~~~~~~v~~~l~~~v~~li~~a~~~~~~~~~~~~PLiRLrV~~~g~~~~n~~r 382 (630)
.+++|||...||+...+ + +.+++.+ .+..+-. ......++|+++|....... +
T Consensus 273 ~v~~i~l~~~~~l~~~~----g-------~~~el~~----~~~~l~~--------~~~~~~~y~~v~l~d~~~~~-~--- 325 (407)
T PRK10966 273 SVTPLPVPVFQPMAVLK----G-------DLASITA----QLEQWRD--------VSQEPPVWLDIEVTTDDYLH-D--- 325 (407)
T ss_pred eEEEEECCCCceeEEec----C-------CHHHHHH----HHHHhhh--------ccCCCCcEEEEEEeCCCCCh-h---
Confidence 99999999999976433 1 1122222 1111100 01124689999988665322 3
Q ss_pred HhhHhhhcccC-ccceEEEEec
Q 006814 383 FGQKYVGKVAN-PQDILIFSKS 403 (630)
Q Consensus 383 fg~~f~~~vaN-p~dil~f~k~ 403 (630)
.-.+......| |+.|+.+.+.
T Consensus 326 ~~~~l~~~~~~~p~~il~i~~~ 347 (407)
T PRK10966 326 IQRRIQALTESLPVEVLLVRRS 347 (407)
T ss_pred HHHHHHHHcCCCCeEEEEEEec
Confidence 33566666667 7789888754
No 5
>PF04152 Mre11_DNA_bind: Mre11 DNA-binding presumed domain ; InterPro: IPR007281 The Mre11 complex is a multi-subunit nuclease that is composed of Mre11, Rad50 and Nbs1/Xrs2, and is involved in checkpoint signalling and DNA replication []. Mre11 has an intrinsic DNA-binding activity that is stimulated by Rad50 on its own or in combination with Nbs1 [].; GO: 0004519 endonuclease activity, 0030145 manganese ion binding, 0006302 double-strand break repair, 0005634 nucleus; PDB: 4FBW_B 4FBK_A 4FCX_B 4FBQ_B 3T1I_B.
Probab=99.98 E-value=5.1e-33 Score=270.69 Aligned_cols=154 Identities=44% Similarity=0.777 Sum_probs=79.7
Q ss_pred eEEEEEECCCCCcEEEEEEEeecCC-CCCCCCHhHHHHHHHHHHHHHHHHhhhcc-----------cccccCCCCEEEEE
Q 006814 302 YRPTKIPLTSVRPFEYTEIILKDEA-DIDPDDQNSILEHLDKVVRNLIERSSKKT-----------VNRSELKLPLVRIK 369 (630)
Q Consensus 302 ~~~e~IpL~tvRpf~~~ei~L~~~~-~~~~~~~~~v~~~l~~~v~~li~~a~~~~-----------~~~~~~~~PLiRLr 369 (630)
|++++|||+|||||++.+|+|++.. ..++.+.++|.++|.+.|++||++|+.+| ....++++||||||
T Consensus 1 f~~~pIpLkTVRPFv~~~i~L~~~~~~~~~~~~~~v~~~l~~~Ve~mI~~A~~~~~~~~~~~~~~~~~~~~~~lPLIRLR 80 (175)
T PF04152_consen 1 FRLEPIPLKTVRPFVFDDIVLSDEPLPLDPDNKEDVEKFLREKVEEMIEEAKEEWEELQREPDDQTGHPKQPPLPLIRLR 80 (175)
T ss_dssp EEEEEEE-SSS--EEEEEEEGGG-TSSSSTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHHT--STTTSSS-SS-EEEEE
T ss_pred CCcccccCCCCCCEEEEEEEeCCcCCCCCcchHHHHHHHHHHHHHHHHHHhHhhhccccccccccccCcccCCCCEEEEE
Confidence 6789999999999999999999886 45677789999999999999999999877 23468899999999
Q ss_pred Eeecc-ccccChhhHhhHhhhcccCccceEEEEeccccccc------ccccccccccCcccchhhhHHHHHHhh--cccc
Q 006814 370 VDYSG-FMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKA------EAKIDDFERLRPEELNQQNIEALVAEN--NLKM 440 (630)
Q Consensus 370 V~~~g-~~~~n~~rfg~~f~~~vaNp~dil~f~k~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~v~~~--~~~l 440 (630)
|+||| |+++||+||||+|+|+||||+|||+|+|+++++.. ....++.....++.+++++|++||.++ ..+|
T Consensus 81 Vdys~~~~~~N~~RFgq~FvgrVANP~Dil~f~rkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~lV~~~l~~~~L 160 (175)
T PF04152_consen 81 VDYSGGFEVFNPQRFGQRFVGRVANPNDILQFYRKKKKKKKKKKKKDEDDPDEEEPLAPEELDQVRVEDLVKEYLSAQKL 160 (175)
T ss_dssp EE-TTT-----CHHHHHCCTTTBS-SSSSEEEE-----------------------------------------------
T ss_pred EEecCCCcccCHHHHHHHhccccCChHHeEEEEecccccccccccccccccchhhhccccccccccHHHHHHHHHhhCCc
Confidence 99999 99999999999999999999999999987654432 112223344556778899999999995 6789
Q ss_pred cccCCCcHHHHHHHH
Q 006814 441 EIIPVNDLDVALHNF 455 (630)
Q Consensus 441 ~~l~~~~l~~a~~~f 455 (630)
+||++++|++||++|
T Consensus 161 ~lL~e~~l~eAv~~F 175 (175)
T PF04152_consen 161 SLLPENGLNEAVEEF 175 (175)
T ss_dssp ---------------
T ss_pred cccCHHHHHHHHHhC
Confidence 999999999999988
No 6
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.98 E-value=2.5e-30 Score=276.26 Aligned_cols=232 Identities=16% Similarity=0.177 Sum_probs=163.8
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC-CChHHHHHHHH-HHHhhccCCCccc
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK-PSRSTLVKAIE-ILRRHCLNDRPVQ 90 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~-Ps~~tl~~~~~-~Lr~l~~g~~p~~ 90 (630)
|||||+||||||....++.+.++...+|+++++.|++++||+||++||+||... |+..++..+.+ +++++.
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~------- 73 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLK------- 73 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHH-------
Confidence 899999999999876666677778889999999999999999999999999964 55555444433 344331
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCC--CcchHHHhhhhCCceeEccceeecCCCccceeEE
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV--DNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~--~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~ 168 (630)
+.++|||+|+||||..... ..-++..+|...+++.+++.. .
T Consensus 74 -------------------------~~gi~v~~I~GNHD~~~~~~~~~~~~~~ll~~~~~v~v~~~~------------~ 116 (340)
T PHA02546 74 -------------------------EAGITLHVLVGNHDMYYKNTIRPNAPTELLGQYDNITVIDEP------------T 116 (340)
T ss_pred -------------------------HCCCeEEEEccCCCcccccccccCchHHHHhhCCCEEEeCCc------------e
Confidence 4589999999999975321 112355677776777766542 1
Q ss_pred EEEEeeCCeeEEEEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCC----C--CccccccccC
Q 006814 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT----N--PKNAINEHFL 242 (630)
Q Consensus 169 Pi~l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~----~--~~~~i~e~~l 242 (630)
++.+ + .+.++++||...+.+..++ +++. .+..||++.|+.+.+. + ....++..++
T Consensus 117 ~v~i--~--g~~i~~lP~~~~~~~~~~~------~~l~---------~~~~~ill~H~~v~g~~~~~g~~~~~~~~~~~~ 177 (340)
T PHA02546 117 TVDF--D--GCSIDLIPWICKENTEEIL------EFIK---------NSKSEYCVGHWELNGFYFYKGMKSDHGLDPDFL 177 (340)
T ss_pred EEEE--C--CEEEEECCCCCHHHHHHHH------HHhc---------cCCCcEEEEeeEEecCcccCCCccccCCChhHh
Confidence 2222 2 2567889998776554322 2232 2356999999865442 1 1123344455
Q ss_pred CCCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCCceEEEEEECCCCCcEEEEEE
Q 006814 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEI 320 (630)
Q Consensus 243 ~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~~~~~e~IpL~tvRpf~~~ei 320 (630)
..|||||+||+|.++ .. ..++|||||++++|+| +..+|||++|+++.+ +++++|+. .|+|.....
T Consensus 178 -~~fdyvALGHiH~~~----~~----~~i~Y~GSp~~~sf~E-~~~~KG~~~vd~~~~--~~efip~~-~~~~~~i~~ 242 (340)
T PHA02546 178 -KKYKQVWSGHFHTIS----EK----GNVTYIGTPYTLTAGD-ENDPRGFWVFDTETH--KLEFIANP-TTWHRRITY 242 (340)
T ss_pred -ccCCEEeecccccCc----cc----CCEEEeCCceeeCccc-cCCCCeEEEEECCCC--ceEEEeCC-CceEEEEEe
Confidence 459999999999963 22 3699999999999986 356899999998765 47899997 488875443
No 7
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=5.1e-28 Score=248.57 Aligned_cols=228 Identities=21% Similarity=0.233 Sum_probs=148.1
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcccee
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
|||||+||||||.......|..+.+.+|+++++.+++++||+||++||+||...|+..+...+.++|.++.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~--------- 71 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLS--------- 71 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHH---------
Confidence 89999999999987766667778889999999999999999999999999999998776655666666652
Q ss_pred eechhhhhcccccCccccCCCCCCCC-CcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeEEEEE
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVG-LPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~-iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi~ 171 (630)
..+ +|||+|+||||.+..... +..++.. ..|+.++... ....++.
T Consensus 72 -----------------------~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~-~~v~i~~~~~--------~~~~~~~ 117 (253)
T TIGR00619 72 -----------------------DANPIPIVVISGNHDSAQRLSA--AKKLLIE-LGVFVVGFPV--------GDPQILL 117 (253)
T ss_pred -----------------------hcCCceEEEEccCCCChhhccc--chhHHHh-CCeEEEEecc--------cCceEEE
Confidence 234 999999999999765432 2234444 4466665532 1123555
Q ss_pred EeeC--CeeEEEEecCCCChHHHHhhhcChh-----------HHhhcChhhhhhhcCCCceEEEEEccCCCCCC------
Q 006814 172 IRKG--STAVALYGLGNIRDERLNRMFQTPH-----------AVQWMRPEAQEECQVSDWFNILVLHQNRVKTN------ 232 (630)
Q Consensus 172 l~kg--~~~valyGl~~i~derl~~~f~~~~-----------~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~------ 232 (630)
+..+ +..+++....+..+.++.+.+.+.. .+..+....... ..++.+||+++|+.+.+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Il~~H~~v~g~~~~~se~ 196 (253)
T TIGR00619 118 LKDTANGELLIVGLPLLPREALLTRAGLDGFGLELLLLHLDVKLRQALEGLIRR-LDPDLPKILLAHLFTAGATKSATER 196 (253)
T ss_pred eccCCCCceEEEEeccCCHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHh-cCCCCCEEEEEcceeccCCCcCceE
Confidence 5432 2333333333433333222221100 011100000000 1245789999999986632
Q ss_pred -----CccccccccCCCCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcE
Q 006814 233 -----PKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKH 291 (630)
Q Consensus 233 -----~~~~i~e~~l~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kg 291 (630)
+...++...++. +||||+||+|.++. ..+ ...++|||||+++||+| +...|+
T Consensus 197 ~~~~g~~~~v~~~~~~~-~dYvALGHiH~~q~----~~~-~~~i~YsGSp~~~sf~E-~~~~K~ 253 (253)
T TIGR00619 197 RIYIGFTYAVPLINFPE-ADYVALGHHHIHKI----SKG-RERVRYSGSPFPLSFDE-AGEDKG 253 (253)
T ss_pred EeeECCccccCHHHCCc-cchhhccccccccc----cCC-CCCEEECCCCccCCcCc-ccCCCC
Confidence 223345566666 69999999999643 333 46899999999999986 234553
No 8
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.94 E-value=5.4e-26 Score=225.73 Aligned_cols=215 Identities=42% Similarity=0.624 Sum_probs=149.6
Q ss_pred EEEEEcCCCCCCCCCch---hchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccc
Q 006814 14 RILVATDCHLGYMEKDE---IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~---~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~ 90 (630)
||+|+||+|||...... .|..+.+.+|+++++.+.+.+||+||++||+||...++...+..+.+.|.++.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~------- 73 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLK------- 73 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHH-------
Confidence 79999999999865433 35788999999999999999999999999999998888877777888887652
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeEEEE
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi 170 (630)
..++||++++||||.+........ .+.. ..+.+++. ......+.
T Consensus 74 -------------------------~~~~~v~~~~GNHD~~~~~~~~~~--~~~~-~~~~~~~~--------~~~~~~~~ 117 (223)
T cd00840 74 -------------------------EAGIPVFIIAGNHDSPSRLGALSP--LLAL-SGLHLVGV--------EEDVLTPL 117 (223)
T ss_pred -------------------------HCCCCEEEecCCCCCccccccccc--hHhh-CcEEEEcc--------cCcceeEE
Confidence 247899999999999876443221 1111 12222210 01122344
Q ss_pred EEeeCCeeEEEEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccc-----cccccCCCC
Q 006814 171 LIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA-----INEHFLPRF 245 (630)
Q Consensus 171 ~l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~-----i~e~~l~~~ 245 (630)
.+..+...+.|||++|.........+.. ....... ...+.++|+++|+++.+..+... ....+.+.+
T Consensus 118 ~~~~~~~~v~i~g~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T cd00840 118 LLPKGGTGVAIYGLPYLRRSRLRDLLAD--AELRPRP------LDPDDFNILLLHGGVAGAGPSDSERAPFVPEALLPAG 189 (223)
T ss_pred EeccCCeEEEEEECCCCCHHHHHHHHHH--HHHHhhc------cCCCCcEEEEEeeeeecCCCCcccccccCcHhhcCcC
Confidence 4555678999999999876554332210 0001111 12467999999999876543322 223455678
Q ss_pred CcEEEeCcccccccCCeecCCCCceEEcCCCCcccccc
Q 006814 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLI 283 (630)
Q Consensus 246 ~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~ 283 (630)
+|||++||+|.+++. ...+..++||||+++++|+
T Consensus 190 ~d~v~~GH~H~~~~~----~~~~~~~~ypGS~~~~~f~ 223 (223)
T cd00840 190 FDYVALGHIHRPQII----LGGGPPIVYPGSPEGLSFS 223 (223)
T ss_pred CCEEECCCcccCeee----cCCCceEEeCCCccccCCC
Confidence 999999999998653 2235799999999999984
No 9
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.78 E-value=5.9e-18 Score=168.90 Aligned_cols=169 Identities=24% Similarity=0.300 Sum_probs=112.9
Q ss_pred ccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccce
Q 006814 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (630)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~ 91 (630)
.|||+|+||+|++.... ...|+++++.+.+++||+||++||+|+...+.. ..+.++|+++
T Consensus 1 ~~~i~~~sDlH~~~~~~--------~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~l--------- 60 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS--------RERLERLVEKINALKPDLVVLTGDLVDGSVDVL---ELLLELLKKL--------- 60 (223)
T ss_pred CCEEEEEeecCCCccCC--------HHHHHHHHHHHhccCCCEEEEcCcccCCcchhh---HHHHHHHhcc---------
Confidence 48999999999997543 246889999999999999999999999876543 2455555543
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeEEEEE
Q 006814 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (630)
Q Consensus 92 ~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi~ 171 (630)
...+|||+++||||...+... .+...+...|...+.+ ..+.
T Consensus 61 ------------------------~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~~L~~--------------~~~~ 101 (223)
T cd07385 61 ------------------------KAPLGVYAVLGNHDYYSGDEE-NWIEALESAGITVLRN--------------ESVE 101 (223)
T ss_pred ------------------------CCCCCEEEECCCcccccCchH-HHHHHHHHcCCEEeec--------------CcEE
Confidence 346899999999998765332 1145666555322211 1234
Q ss_pred EeeCCeeEEEEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCCCCcEEEe
Q 006814 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVW 251 (630)
Q Consensus 172 l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~i~e~~l~~~~DyVa~ 251 (630)
+..++..+.++|+++..... .. ....+ +. ..++.++|++.|++.. + +.+...++||+++
T Consensus 102 ~~~~~~~i~i~G~~~~~~~~-----~~--~~~~~-~~-----~~~~~~~I~l~H~P~~-------~-~~~~~~~~dl~l~ 160 (223)
T cd07385 102 ISVGGATIGIAGVDDGLGRR-----PD--LEKAL-KG-----LDEDDPNILLAHQPDT-------A-EEAAAWGVDLQLS 160 (223)
T ss_pred eccCCeEEEEEeccCccccC-----CC--HHHHH-hC-----CCCCCCEEEEecCCCh-------h-HHhcccCccEEEe
Confidence 56677899999976542210 00 00111 11 1246799999998532 1 2234467999999
Q ss_pred CcccccccC
Q 006814 252 GHEHECLID 260 (630)
Q Consensus 252 GH~H~~~i~ 260 (630)
||+|.+|+.
T Consensus 161 GHtHggqi~ 169 (223)
T cd07385 161 GHTHGGQIR 169 (223)
T ss_pred ccCCCCEEe
Confidence 999999864
No 10
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.71 E-value=1.8e-16 Score=164.56 Aligned_cols=171 Identities=19% Similarity=0.297 Sum_probs=110.1
Q ss_pred CCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCc
Q 006814 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (630)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p 88 (630)
..+.|||+|+||+|++.... ...++++++.+++++||+|+++||+++...+. ....+.+.|+++.
T Consensus 46 ~~~~~rI~~lSDlH~~~~~~--------~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~--~~~~~~~~L~~L~----- 110 (271)
T PRK11340 46 NAAPFKILFLADLHYSRFVP--------LSLISDAIALGIEQKPDLILLGGDYVLFDMPL--NFSAFSDVLSPLA----- 110 (271)
T ss_pred CCCCcEEEEEcccCCCCcCC--------HHHHHHHHHHHHhcCCCEEEEccCcCCCCccc--cHHHHHHHHHHHh-----
Confidence 45679999999999985321 34578899999999999999999999843222 1234556666652
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcc-hHHHhhhhCCceeEccceeecCCCccceeE
Q 006814 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITV 167 (630)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~l-s~ldiL~~~glVn~fg~~~l~~~~~~~i~~ 167 (630)
...|||+|.||||...+.... ...+.|...|. .++..
T Consensus 111 ----------------------------~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi-~lL~n------------- 148 (271)
T PRK11340 111 ----------------------------ECAPTFACFGNHDRPVGTEKNHLIGETLKSAGI-TVLFN------------- 148 (271)
T ss_pred ----------------------------hcCCEEEecCCCCcccCccchHHHHHHHHhcCc-EEeeC-------------
Confidence 246999999999986543221 12345665553 22211
Q ss_pred EEEEEeeCCeeEEEEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCCCCc
Q 006814 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLD 247 (630)
Q Consensus 168 ~Pi~l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~i~e~~l~~~~D 247 (630)
+.+.+..++..+.|+|++.....+ . . ....+ .++.++|++.|++.. + +.+-...+|
T Consensus 149 ~~~~i~~~~~~i~i~G~~d~~~~~----~-~--~~~~~---------~~~~~~IlL~H~P~~-------~-~~~~~~~~d 204 (271)
T PRK11340 149 QATVIATPNRQFELVGTGDLWAGQ----C-K--PPPAS---------EANLPRLVLAHNPDS-------K-EVMRDEPWD 204 (271)
T ss_pred CeEEEeeCCcEEEEEEecchhccC----C-C--hhHhc---------CCCCCeEEEEcCCCh-------h-HhhccCCCC
Confidence 223445566789999997532110 0 0 00001 136699999999742 1 223335799
Q ss_pred EEEeCcccccccC
Q 006814 248 FVVWGHEHECLID 260 (630)
Q Consensus 248 yVa~GH~H~~~i~ 260 (630)
++++||+|.+|+.
T Consensus 205 L~lsGHTHGGQi~ 217 (271)
T PRK11340 205 LMLCGHTHGGQLR 217 (271)
T ss_pred EEEeccccCCeEE
Confidence 9999999999874
No 11
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.63 E-value=1.2e-14 Score=150.98 Aligned_cols=87 Identities=24% Similarity=0.344 Sum_probs=65.9
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccC
Q 006814 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLN 85 (630)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g 85 (630)
...+.|||+|+||+||.........+.+....|+.+++.+++. +||+||++|||.+... ......+.+.|.+
T Consensus 10 ~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~---- 83 (275)
T PRK11148 10 AGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAP---- 83 (275)
T ss_pred CCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhh----
Confidence 3457799999999999654333344567888999999988765 6999999999999653 4445555555543
Q ss_pred CCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 86 ~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
..+|+|+|+||||..
T Consensus 84 -------------------------------l~~Pv~~v~GNHD~~ 98 (275)
T PRK11148 84 -------------------------------LRKPCVWLPGNHDFQ 98 (275)
T ss_pred -------------------------------cCCcEEEeCCCCCCh
Confidence 258999999999974
No 12
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.57 E-value=3.2e-15 Score=140.14 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=49.5
Q ss_pred ceEEEEEccCCCCCCC-ccccccccCCCCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEE
Q 006814 218 WFNILVLHQNRVKTNP-KNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLE 296 (630)
Q Consensus 218 ~fnIlvlHq~~~~~~~-~~~i~e~~l~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lle 296 (630)
..+|+++|........ ...+...+....+++|+.||+|..+.. + ..+..+++|||....... .++++++++
T Consensus 81 ~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~--~--~~~~~~~~~Gs~~~~~~~----~~~~~~i~~ 152 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTHRPQVF--K--IGGIHVINPGSIGGPRHG----DQSGYAILD 152 (156)
T ss_dssp TEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSSSEEEE--E--ETTEEEEEE-GSSS-SSS----SSEEEEEEE
T ss_pred CCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcccceEE--E--ECCEEEEECCcCCCCCCC----CCCEEEEEE
Confidence 4688999986544211 112223344577999999999997652 2 235789999998776643 289999999
Q ss_pred EeC
Q 006814 297 IKE 299 (630)
Q Consensus 297 I~~ 299 (630)
++.
T Consensus 153 ~~~ 155 (156)
T PF12850_consen 153 IED 155 (156)
T ss_dssp ETT
T ss_pred Eec
Confidence 875
No 13
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.56 E-value=1.8e-14 Score=145.39 Aligned_cols=197 Identities=19% Similarity=0.273 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccce
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~ 91 (630)
||+|+||+|+|.......+..+...+|+.+++.+++. +||+||++|||++...+ .....+.+.|++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~---------- 68 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--ESYERLRELLAA---------- 68 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--HHHHHHHHHHhh----------
Confidence 6999999999964322234456678899999999988 99999999999997543 334445555543
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeEEEEE
Q 006814 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (630)
Q Consensus 92 ~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi~ 171 (630)
.++|+++|+||||..... ...+..... ..+. .. ..
T Consensus 69 -------------------------~~~p~~~v~GNHD~~~~~-----~~~~~~~~~--~~~~--------~~-----~~ 103 (240)
T cd07402 69 -------------------------LPIPVYLLPGNHDDRAAM-----RAVFPELPP--APGF--------VQ-----YV 103 (240)
T ss_pred -------------------------cCCCEEEeCCCCCCHHHH-----HHhhccccc--cccc--------cc-----ee
Confidence 268999999999974211 112211100 0000 00 01
Q ss_pred EeeCCeeEEEEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCc---c-cc--c---cccC
Q 006814 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK---N-AI--N---EHFL 242 (630)
Q Consensus 172 l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~---~-~i--~---e~~l 242 (630)
+..+ .+.++++...........+. ...++|+...... ..+...|+++|++....... . .. . .+++
T Consensus 104 ~~~~--~~~~i~lds~~~~~~~~~~~-~~ql~wL~~~L~~---~~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l 177 (240)
T cd07402 104 VDLG--GWRLILLDSSVPGQHGGELC-AAQLDWLEAALAE---APDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVL 177 (240)
T ss_pred EecC--CEEEEEEeCCCCCCcCCEEC-HHHHHHHHHHHHh---CCCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHH
Confidence 1222 34555554322100000011 1234555433221 12567899999986542210 0 00 0 1233
Q ss_pred C-C-CCcEEEeCcccccccCCeecCCCCceEEcCCCC
Q 006814 243 P-R-FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (630)
Q Consensus 243 ~-~-~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~ 277 (630)
. . .++++++||.|..... ... +..+++.||.
T Consensus 178 ~~~~~v~~v~~GH~H~~~~~--~~~--g~~~~~~gs~ 210 (240)
T cd07402 178 ARHPNVRAILCGHVHRPIDG--SWG--GIPLLTAPST 210 (240)
T ss_pred hcCCCeeEEEECCcCchHHe--EEC--CEEEEEcCcc
Confidence 3 2 6899999999997542 332 4566666665
No 14
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.56 E-value=2.7e-14 Score=133.26 Aligned_cols=80 Identities=26% Similarity=0.339 Sum_probs=58.6
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeee
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~l 94 (630)
|+|+||+|+|.......... ...|+++++.+.+.++|+|+++||+++... ...+..+.++|+++.
T Consensus 1 il~isD~Hl~~~~~~~~~~~--~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~--~~~~~~~~~~~~~l~----------- 65 (144)
T cd07400 1 ILHLSDLHFGPERKPELLAL--LSLLDRLLAEIKALDPDLVVITGDLTQRGL--PEEFEEAREFLDALP----------- 65 (144)
T ss_pred CeEeCccCCCCCcchhHHHH--HHHHHHHHHHHhccCCCEEEECCCCCCCCC--HHHHHHHHHHHHHcc-----------
Confidence 79999999997644322111 122778899999999999999999999754 344556666776652
Q ss_pred chhhhhcccccCccccCCCCCCCCCcEEEEcCCCCC
Q 006814 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (630)
Q Consensus 95 sd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~ 130 (630)
...+|+++|+||||.
T Consensus 66 ---------------------~~~~~~~~v~GNHD~ 80 (144)
T cd07400 66 ---------------------APLEPVLVVPGNHDV 80 (144)
T ss_pred ---------------------ccCCcEEEeCCCCeE
Confidence 112699999999996
No 15
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.54 E-value=5.2e-13 Score=137.34 Aligned_cols=228 Identities=15% Similarity=0.200 Sum_probs=126.1
Q ss_pred CCccEEEEEcCCCCCCCCCc----hhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChH---HHHHHHHHHH
Q 006814 10 ANTVRILVATDCHLGYMEKD----EIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRS---TLVKAIEILR 80 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d----~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~---tl~~~~~~Lr 80 (630)
.+.++|+|+||.|+|..... ..+..+....++.+++.+.+. ++|+||++|||++....... ....+.++++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 35789999999999974332 122334456789999999887 99999999999998654321 1112222332
Q ss_pred hhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCC
Q 006814 81 RHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGS 160 (630)
Q Consensus 81 ~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~ 160 (630)
++ ..++|+++|+||||...... ...+..+. ..||...
T Consensus 82 ~~---------------------------------~~~vp~~~i~GNHD~~~~~~-~~~~~~f~-----~~~g~~~---- 118 (262)
T cd07395 82 LL---------------------------------DPDIPLVCVCGNHDVGNTPT-EESIKDYR-----DVFGDDY---- 118 (262)
T ss_pred hc---------------------------------cCCCcEEEeCCCCCCCCCCC-hhHHHHHH-----HHhCCcc----
Confidence 21 34789999999999742211 11122121 1122110
Q ss_pred CccceeEEEEEEeeCCeeEEEEec-----------CCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCC
Q 006814 161 GVGEITVYPILIRKGSTAVALYGL-----------GNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (630)
Q Consensus 161 ~~~~i~~~Pi~l~kg~~~valyGl-----------~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~ 229 (630)
. .+..++ +.+++| +++.. ..+.|+...............|++.|.+..
T Consensus 119 ----y-----~~~~~~--~~~i~lds~~~~~~~~~~~~~~----------~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~ 177 (262)
T cd07395 119 ----F-----SFWVGG--VFFIVLNSQLFFDPSEVPELAQ----------AQDVWLEEQLEIAKESDCKHVIVFQHIPWF 177 (262)
T ss_pred ----e-----EEEECC--EEEEEeccccccCccccccchH----------HHHHHHHHHHHHHHhccCCcEEEEECcCCc
Confidence 0 000111 111111 12222 234555433221100134578999999875
Q ss_pred CCCC---ccc--cc-------cccC-CCCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEE
Q 006814 230 KTNP---KNA--IN-------EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLE 296 (630)
Q Consensus 230 ~~~~---~~~--i~-------e~~l-~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lle 296 (630)
...+ ..+ +. ..++ ..++++|++||.|..... ... +...+..|++ +..+. ..+.|+.+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~--~~~--g~~~~~~~~~-~~~~~---~~~~g~~~~~ 249 (262)
T cd07395 178 LEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGG--RYG--GLEMVVTSAI-GAQLG---NDKSGLRIVK 249 (262)
T ss_pred cCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCce--EEC--CEEEEEcCce-ecccC---CCCCCcEEEE
Confidence 3221 111 11 1122 257999999999987542 232 3444444444 33443 3578999999
Q ss_pred EeCCceEEEEEEC
Q 006814 297 IKENQYRPTKIPL 309 (630)
Q Consensus 297 I~~~~~~~e~IpL 309 (630)
|+++++..+...|
T Consensus 250 v~~~~~~~~~~~~ 262 (262)
T cd07395 250 VTEDKIVHEYYSL 262 (262)
T ss_pred ECCCceeeeeeeC
Confidence 9988887776543
No 16
>PRK09453 phosphodiesterase; Provisional
Probab=99.52 E-value=5.6e-13 Score=130.23 Aligned_cols=172 Identities=22% Similarity=0.321 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC----CChHHHHHHHHHHHhhccCCCc
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK----PSRSTLVKAIEILRRHCLNDRP 88 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~----Ps~~tl~~~~~~Lr~l~~g~~p 88 (630)
|||+++||+|.. +.+++++++.+.+.++|.|+++||+++... +.......+++.|++
T Consensus 1 mri~viSD~Hg~------------~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~------- 61 (182)
T PRK09453 1 MKLMFASDTHGS------------LPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNA------- 61 (182)
T ss_pred CeEEEEEeccCC------------HHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHh-------
Confidence 899999999964 346889999999999999999999998532 111112334555543
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeEE
Q 006814 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (630)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~ 168 (630)
.+.++++|+||||.... ..+. + +
T Consensus 62 ----------------------------~~~~v~~V~GNhD~~~~-------~~~~--~----~---------------- 84 (182)
T PRK09453 62 ----------------------------YADKIIAVRGNCDSEVD-------QMLL--H----F---------------- 84 (182)
T ss_pred ----------------------------cCCceEEEccCCcchhh-------hhcc--C----C----------------
Confidence 24689999999996321 0000 0 0
Q ss_pred EEEEeeCCeeEEEEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCCCCcE
Q 006814 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (630)
Q Consensus 169 Pi~l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~i~e~~l~~~~Dy 248 (630)
|. ..+ + .++. -+..+|+++|+.... + ..+ .....+|+
T Consensus 85 ~~----------------~~~------~------~~~~---------l~g~~i~l~HG~~~~--~-~~~---~~~~~~d~ 121 (182)
T PRK09453 85 PI----------------MAP------Y------QQVL---------LEGKRLFLTHGHLYG--P-ENL---PALHDGDV 121 (182)
T ss_pred cc----------------cCc------e------EEEE---------ECCeEEEEECCCCCC--h-hhc---ccccCCCE
Confidence 00 000 0 0000 134679999985322 1 011 11245899
Q ss_pred EEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCCceEEEEEECCCCCcE
Q 006814 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPF 315 (630)
Q Consensus 249 Va~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~~~~~e~IpL~tvRpf 315 (630)
+++||+|.+... .. .+..+++|||.-... + ..+..|+++++. .++.+.|..-++.
T Consensus 122 vi~GHtH~p~~~--~~--~~~~~iNpGs~~~p~---~-~~~~s~~il~~~----~~~~~~~~~~~~~ 176 (182)
T PRK09453 122 LVYGHTHIPVAE--KQ--GGIILFNPGSVSLPK---G-GYPASYGILDDN----VLSVIDLEGGEVI 176 (182)
T ss_pred EEECCCCCCcce--EE--CCEEEEECCCccccC---C-CCCCeEEEEECC----cEEEEECCCCeEE
Confidence 999999997643 22 257999999964322 2 234588999873 3566667665544
No 17
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.49 E-value=3.6e-13 Score=128.45 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=38.2
Q ss_pred CCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCCceE
Q 006814 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYR 303 (630)
Q Consensus 244 ~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~~~~ 303 (630)
..+|+|++||.|..... ... +..+++|||....... .+.+|+++++.++.++
T Consensus 105 ~~~d~vi~GHtH~~~~~--~~~--~~~~iNpGs~~~~~~~----~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 105 LGVDVLIFGHTHIPVAE--ELR--GILLINPGSLTGPRNG----NTPSYAILDVDKDKVT 156 (158)
T ss_pred cCCCEEEECCCCCCccE--EEC--CEEEEECCccccccCC----CCCeEEEEEecCCeEE
Confidence 46899999999997542 332 4688999998654331 2668999999887654
No 18
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.47 E-value=8.1e-13 Score=133.80 Aligned_cols=201 Identities=18% Similarity=0.307 Sum_probs=112.8
Q ss_pred CccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccc
Q 006814 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~ 90 (630)
..+||+++||+|-. +.+++.+++.++++++|+|+++|||.+... ..+.+..+++.|.+
T Consensus 3 ~~~kIl~iSDiHgn------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~-~~~~~~~~l~~l~~--------- 60 (224)
T cd07388 3 TVRYVLATSNPKGD------------LEALEKLVGLAPETGADAIVLIGNLLPKAA-KSEDYAAFFRILGE--------- 60 (224)
T ss_pred ceeEEEEEEecCCC------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCC-CHHHHHHHHHHHHh---------
Confidence 46899999999953 567899999999999999999999999652 23333334444432
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhh--------CCceeEccceeecCCCc
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA--------CNLVNYFGKMVLGGSGV 162 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~--------~glVn~fg~~~l~~~~~ 162 (630)
.+.|+++|+||||.+. . ..|.. ++.++.-++.
T Consensus 61 --------------------------l~~pv~~V~GNhD~~v-~------~~l~~~~~~~~~~p~~~~lh~~~------- 100 (224)
T cd07388 61 --------------------------AHLPTFYVPGPQDAPL-W------EYLREAYNAELVHPEIRNVHETF------- 100 (224)
T ss_pred --------------------------cCCceEEEcCCCChHH-H------HHHHHHhcccccCccceecCCCe-------
Confidence 3579999999999751 1 12221 1223333321
Q ss_pred cceeEEEEEEeeCCeeEEEEecCCCChHHHHhhhcChhH---HhhcChhhhhhh-cCCCceEEEEEccCCCCCC----Cc
Q 006814 163 GEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHA---VQWMRPEAQEEC-QVSDWFNILVLHQNRVKTN----PK 234 (630)
Q Consensus 163 ~~i~~~Pi~l~kg~~~valyGl~~i~derl~~~f~~~~~---v~~l~p~~~~~~-~~~~~fnIlvlHq~~~~~~----~~ 234 (630)
+.+. ..+.++|+|...... ..+.+... ..|+........ .......||++|.+..+.+ ..
T Consensus 101 -------~~~~---g~~~~~GlGGs~~~~--~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h~GS 168 (224)
T cd07388 101 -------AFWR---GPYLVAGVGGEIADE--GEPEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNEQGS 168 (224)
T ss_pred -------EEec---CCeEEEEecCCcCCC--CCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCccCH
Confidence 1111 235667776432110 00000000 011100000000 0124578999999875532 11
Q ss_pred cccccccCC-CCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCCc
Q 006814 235 NAINEHFLP-RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ 301 (630)
Q Consensus 235 ~~i~e~~l~-~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~~ 301 (630)
..+ ..++. ....++++||+|... ..+ + +..|++||+. .+| +++++++++..
T Consensus 169 ~al-r~~I~~~~P~l~i~GHih~~~---~~~-g-~t~vvNpg~~-----~~g-----~~a~i~~~~~~ 220 (224)
T cd07388 169 HEV-AHLIKTHNPLVVLVGGKGQKH---ELL-G-ASWVVVPGDL-----SEG-----RYALLDLRARK 220 (224)
T ss_pred HHH-HHHHHHhCCCEEEEcCCceeE---EEe-C-CEEEECCCcc-----cCC-----cEEEEEecCcc
Confidence 111 12232 336799999999432 233 2 4689999983 222 57899987543
No 19
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.47 E-value=2.1e-12 Score=126.41 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCCcEEEeCcccccccCCeecCCCCceEEcCCCCcc-cccccCccCCcEEEEEEEeCCceEEEEEECCC
Q 006814 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA-TSLIEGESKPKHVLLLEIKENQYRPTKIPLTS 311 (630)
Q Consensus 244 ~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~-ts~~egE~~~Kgv~lleI~~~~~~~e~IpL~t 311 (630)
..+|++++||+|.+... .. .+..+++|||.-. .+-..+ .....|++++++.+.+.++.+.|.-
T Consensus 105 ~~~dvii~GHTH~p~~~--~~--~g~~viNPGSv~~~~~~~~~-~~~~syail~~~~~~~~~~~~~l~~ 168 (178)
T cd07394 105 LDVDILISGHTHKFEAF--EH--EGKFFINPGSATGAFSPLDP-NVIPSFVLMDIQGSKVVTYVYQLID 168 (178)
T ss_pred cCCCEEEECCCCcceEE--EE--CCEEEEECCCCCCCCCCCCC-CCCCeEEEEEecCCeEEEEEEEEEC
Confidence 45799999999997542 23 2579999999742 111111 2245899999998888888888754
No 20
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.47 E-value=8.8e-13 Score=124.72 Aligned_cols=79 Identities=22% Similarity=0.202 Sum_probs=49.3
Q ss_pred eEEEEEccCCCCCCCccccccccCCCCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEe
Q 006814 219 FNILVLHQNRVKTNPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIK 298 (630)
Q Consensus 219 fnIlvlHq~~~~~~~~~~i~e~~l~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~ 298 (630)
.+|+++|+...................+||+++||+|.+... ... +..+++|||...... ..+.+|++++++
T Consensus 76 ~~i~v~Hg~~~~~~~~~~~~~~~~~~~~d~vi~GHtH~~~~~--~~~--~~~~inpGs~~~~~~----~~~~~~~i~~~~ 147 (155)
T cd00841 76 KRIFLTHGHLYGVKNGLDRLYLAKEGGADVVLYGHTHIPVIE--KIG--GVLLLNPGSLSLPRG----GGPPTYAILEID 147 (155)
T ss_pred EEEEEECCcccccccchhhhhhhhhcCCCEEEECcccCCccE--EEC--CEEEEeCCCccCcCC----CCCCeEEEEEec
Confidence 577777776432111000001112346899999999998642 332 578999999865332 357899999998
Q ss_pred CCceEEEE
Q 006814 299 ENQYRPTK 306 (630)
Q Consensus 299 ~~~~~~e~ 306 (630)
+ .++++.
T Consensus 148 ~-~~~~~~ 154 (155)
T cd00841 148 D-KGEVEI 154 (155)
T ss_pred C-CCcEEE
Confidence 7 555554
No 21
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.43 E-value=1.2e-13 Score=126.05 Aligned_cols=79 Identities=35% Similarity=0.534 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcccee
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
|||+|+||+|+++.... . .+..+...+.+.++|+||++||+++...++.............
T Consensus 1 ~ri~~isD~H~~~~~~~-------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~----------- 61 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS-------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRL----------- 61 (200)
T ss_dssp EEEEEEEBBTTTHHHHC-------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEcCCCCCCcchh-------H-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhh-----------
Confidence 79999999999964322 3 5678888899999999999999999987655433322101111
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~ 132 (630)
....+||++|+||||...
T Consensus 62 ----------------------~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 62 ----------------------LNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp ----------------------HHTTTTEEEEE-TTSSHH
T ss_pred ----------------------hhccccccccccccccce
Confidence 135789999999999865
No 22
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.41 E-value=1.1e-11 Score=128.37 Aligned_cols=86 Identities=24% Similarity=0.334 Sum_probs=64.4
Q ss_pred cEEEEEcCCCCCCCCCc-hhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCC-hHHHHHHHHHHHhhccCCCccc
Q 006814 13 VRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS-RSTLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d-~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps-~~tl~~~~~~Lr~l~~g~~p~~ 90 (630)
+||+++||+|++..... .....++...|+.+++.+++.+||+||++|||++...+. ...+..+.+.|.+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~--------- 71 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDR--------- 71 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHh---------
Confidence 69999999998865432 233456788999999999999999999999999877653 1233333444432
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~ 133 (630)
.++|+++++||||....
T Consensus 72 --------------------------l~~p~~~v~GNHD~~~~ 88 (267)
T cd07396 72 --------------------------LKGPVHHVLGNHDLYNP 88 (267)
T ss_pred --------------------------cCCCEEEecCccccccc
Confidence 36899999999998643
No 23
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.40 E-value=1.1e-12 Score=126.58 Aligned_cols=176 Identities=23% Similarity=0.323 Sum_probs=93.4
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeee
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~l 94 (630)
|+++||+|.++ ..++. ..+++.++|+||++|||++...+.. +..++.|++
T Consensus 1 i~~~sD~H~~~------------~~~~~--~~~~~~~~D~vv~~GDl~~~~~~~~---~~~~~~l~~------------- 50 (188)
T cd07392 1 ILAISDIHGDV------------EKLEA--IILKAEEADAVIVAGDITNFGGKEA---AVEINLLLA------------- 50 (188)
T ss_pred CEEEEecCCCH------------HHHHH--HHhhccCCCEEEECCCccCcCCHHH---HHHHHHHHh-------------
Confidence 68999999974 22333 4456789999999999998765432 122244432
Q ss_pred chhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeEEEEEEee
Q 006814 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRK 174 (630)
Q Consensus 95 sd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi~l~k 174 (630)
.++|+|+|+||||.+.... .+. .+..+.-+ ..+.+
T Consensus 51 ----------------------~~~p~~~v~GNHD~~~~~~------~~~-~~~~~~~~--------------~~~~~-- 85 (188)
T cd07392 51 ----------------------IGVPVLAVPGNCDTPEILG------LLT-SAGLNLHG--------------KVVEV-- 85 (188)
T ss_pred ----------------------cCCCEEEEcCCCCCHHHHH------hhh-cCcEecCC--------------CEEEE--
Confidence 4689999999999753211 111 11111111 11111
Q ss_pred CCeeEEEEecCCCChH--HHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCC-CCc---c-ccc----cccC-
Q 006814 175 GSTAVALYGLGNIRDE--RLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPK---N-AIN----EHFL- 242 (630)
Q Consensus 175 g~~~valyGl~~i~de--rl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~-~~~---~-~i~----e~~l- 242 (630)
+ .+.++|++...+. +-...+.. ..+.++ ... ......+.|+++|++..+. ... . ... ..++
T Consensus 86 ~--~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~-~~l---~~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~ 158 (188)
T cd07392 86 G--GYTFVGIGGSNPTPFNTPIELSE-EEIVSD-GRL---NNLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIE 158 (188)
T ss_pred C--CEEEEEeCCCCCCCCCCccccCH-HHHHHh-hhh---hccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHH
Confidence 1 2567777532110 00000111 223333 000 0123568999999987541 100 0 000 1222
Q ss_pred CCCCcEEEeCcccccccCCeecCCCCceEEcCC
Q 006814 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPG 275 (630)
Q Consensus 243 ~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPG 275 (630)
....++|++||+|..... ..+. +..+++||
T Consensus 159 ~~~~~~~l~GH~H~~~~~-~~~~--~~~~~n~G 188 (188)
T cd07392 159 ERQPLLCICGHIHESRGV-DKIG--NTLVVNPG 188 (188)
T ss_pred HhCCcEEEEeccccccce-eeeC--CeEEecCC
Confidence 235799999999997531 2232 36888887
No 24
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.39 E-value=5.1e-12 Score=128.99 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC---CChHHHHHHHHHHHhhccCCCcc
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK---PSRSTLVKAIEILRRHCLNDRPV 89 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~---Ps~~tl~~~~~~Lr~l~~g~~p~ 89 (630)
|||+|+||+|+|.... +..+.|.+.++ ..+.+||+|+++||+||... ........+.++|+++.
T Consensus 1 M~i~~iSDlHl~~~~~------~~~~~~~~~l~-~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~------ 67 (241)
T PRK05340 1 MPTLFISDLHLSPERP------AITAAFLRFLR-GEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALS------ 67 (241)
T ss_pred CcEEEEeecCCCCCCh------hHHHHHHHHHH-hhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHH------
Confidence 8999999999996432 12345555553 24568999999999998521 11122344556666552
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006814 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (630)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~ 132 (630)
..++|||+|+||||...
T Consensus 68 --------------------------~~g~~v~~v~GNHD~~~ 84 (241)
T PRK05340 68 --------------------------DSGVPCYFMHGNRDFLL 84 (241)
T ss_pred --------------------------HcCCeEEEEeCCCchhh
Confidence 34689999999999743
No 25
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.37 E-value=7.5e-12 Score=127.19 Aligned_cols=80 Identities=20% Similarity=0.155 Sum_probs=47.6
Q ss_pred EEEEcCCCCCCCCCc--hhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccc
Q 006814 15 ILVATDCHLGYMEKD--EIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 15 ILh~SD~HLG~~~~d--~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~ 90 (630)
|.++||+|++..... +..++...+..+++.+.+... ++|+||++|||++...+. .....++.|+.+
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~--~~~~~l~~l~~l-------- 70 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLE--EAKLDLAWIDAL-------- 70 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChH--HHHHHHHHHHhC--------
Confidence 578999999963211 112221222333333333333 899999999999654322 233444455432
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
..|+|+|+||||..
T Consensus 71 ---------------------------~~~v~~V~GNHD~~ 84 (232)
T cd07393 71 ---------------------------PGTKVLLKGNHDYW 84 (232)
T ss_pred ---------------------------CCCeEEEeCCcccc
Confidence 34899999999974
No 26
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.37 E-value=3e-11 Score=120.70 Aligned_cols=203 Identities=22% Similarity=0.365 Sum_probs=116.8
Q ss_pred CccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCC--CCCCCChHHHHHH-HHHHHhhccCCC
Q 006814 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKA-IEILRRHCLNDR 87 (630)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLF--d~~~Ps~~tl~~~-~~~Lr~l~~g~~ 87 (630)
.+||||.+||+|-. +..|.+++..|...++|+++++|||. |-..+- .+.... ++.++
T Consensus 2 ~~mkil~vtDlHg~------------~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~-~~~~~~~~e~l~------- 61 (226)
T COG2129 2 KKMKILAVTDLHGS------------EDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKE-VAEELNKLEALK------- 61 (226)
T ss_pred CcceEEEEeccccc------------hHHHHHHHHHHhhccCCEEEEecceehhhcCchH-HHHhhhHHHHHH-------
Confidence 47999999999997 35688999999999999999999998 655432 211110 22222
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeE
Q 006814 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITV 167 (630)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~ 167 (630)
..++|||+++||.|.+.- .++|..++ ++..++..
T Consensus 62 ----------------------------~~~~~v~avpGNcD~~~v------~~~l~~~~-~~v~~~v~----------- 95 (226)
T COG2129 62 ----------------------------ELGIPVLAVPGNCDPPEV------IDVLKNAG-VNVHGRVV----------- 95 (226)
T ss_pred ----------------------------hcCCeEEEEcCCCChHHH------HHHHHhcc-cccccceE-----------
Confidence 347999999999997643 24555533 34444321
Q ss_pred EEEEEeeCCeeEEEEecCCC--ChHHHHhhhcCh---hHHhhcChhhhhhhcCCCceEEEEEccCCCCCCC---ccccc-
Q 006814 168 YPILIRKGSTAVALYGLGNI--RDERLNRMFQTP---HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP---KNAIN- 238 (630)
Q Consensus 168 ~Pi~l~kg~~~valyGl~~i--~derl~~~f~~~---~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~---~~~i~- 238 (630)
+-++ +.+.|+|.. ..-..-+.|.+. ..++++... .....||+++|.+..+..- ..+..
T Consensus 96 -----~i~~--~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~------~~~~~~Il~~HaPP~gt~~d~~~g~~hv 162 (226)
T COG2129 96 -----EIGG--YGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKK------ADNPVNILLTHAPPYGTLLDTPSGYVHV 162 (226)
T ss_pred -----EecC--cEEEEecccCCCCCCCccccCHHHHHHHHHHHHhc------ccCcceEEEecCCCCCccccCCCCcccc
Confidence 1122 233333332 110000001100 112233221 1233449999998765321 11111
Q ss_pred -----cccCCCCCc--EEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCCceEEEE
Q 006814 239 -----EHFLPRFLD--FVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306 (630)
Q Consensus 239 -----e~~l~~~~D--yVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~~~~~e~ 306 (630)
..++ ..++ +.++||+|+..-. ..+ .+..+++||+ + ...+|+++++.+..++.+.
T Consensus 163 GS~~vr~~i-eefqP~l~i~GHIHEs~G~-d~i--G~TivVNPG~-----~-----~~g~yA~i~l~~~~Vk~~~ 223 (226)
T COG2129 163 GSKAVRKLI-EEFQPLLGLHGHIHESRGI-DKI--GNTIVVNPGP-----L-----GEGRYALIELEKEVVKLEQ 223 (226)
T ss_pred chHHHHHHH-HHhCCceEEEeeecccccc-ccc--CCeEEECCCC-----c-----cCceEEEEEecCcEEEEEE
Confidence 0111 2244 9999999986542 222 2468999998 2 2457999999987655554
No 27
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.36 E-value=6.7e-12 Score=124.14 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=56.7
Q ss_pred CccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccc
Q 006814 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~ 90 (630)
+.|||+|+||+|+|..............++..+.+.+.+.+||+||++||+++...+.........+++..+
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l-------- 72 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPM-------- 72 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHH--------
Confidence 369999999999998643210111113445555555667899999999999998776431222222222222
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCC
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~ 130 (630)
...++|+++++||||.
T Consensus 73 ------------------------~~~~~p~~~~~GNHD~ 88 (199)
T cd07383 73 ------------------------IDRKIPWAATFGNHDG 88 (199)
T ss_pred ------------------------HHcCCCEEEECccCCC
Confidence 0247999999999994
No 28
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.36 E-value=1.8e-11 Score=126.36 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=35.8
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHH-HHHHHHHHHhcCCCEEEEcCCCCCCCC
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEA-FEEICSIAEQKEVDFVLLGGDLFHENK 66 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~t-Feeil~~A~~~~VD~VLlaGDLFd~~~ 66 (630)
|+|+||+|+|...... ... .+.+++.+++.++|+||++||++|...
T Consensus 2 ~~~iSDlH~g~~~~~~------~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~ 48 (256)
T cd07401 2 FVHISDIHVSSFHPPN------RAQDETFCSNFIDVIKPALVLATGDLTDNKT 48 (256)
T ss_pred EEEecccccCCcCchh------hhhHHHHHHHHHHhhCCCEEEEccccccccc
Confidence 7999999999654322 111 366788888999999999999998754
No 29
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.30 E-value=4.9e-11 Score=116.14 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=54.0
Q ss_pred CceEEEEEccCCCCCCCccccccccC--CCCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEE
Q 006814 217 DWFNILVLHQNRVKTNPKNAINEHFL--PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLL 294 (630)
Q Consensus 217 ~~fnIlvlHq~~~~~~~~~~i~e~~l--~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~l 294 (630)
+.++|+++|+...... .++.....+ ...+|.+++||+|.+.. ++.. +..+++|||+-.... ..++.+++
T Consensus 80 ~g~ki~l~HGh~~~~~-~~~~~l~~la~~~~~Dvli~GHTH~p~~--~~~~--~i~~vNPGS~s~pr~----~~~~sy~i 150 (172)
T COG0622 80 GGVKIFLTHGHLYFVK-TDLSLLEYLAKELGADVLIFGHTHKPVA--EKVG--GILLVNPGSVSGPRG----GNPASYAI 150 (172)
T ss_pred CCEEEEEECCCccccc-cCHHHHHHHHHhcCCCEEEECCCCcccE--EEEC--CEEEEcCCCcCCCCC----CCCcEEEE
Confidence 3467777777433210 011111111 24599999999999765 3433 478999999954332 25779999
Q ss_pred EEEeCCceEEEEEECC
Q 006814 295 LEIKENQYRPTKIPLT 310 (630)
Q Consensus 295 leI~~~~~~~e~IpL~ 310 (630)
+++.+.++....+...
T Consensus 151 l~~~~~~~~~~~~~~~ 166 (172)
T COG0622 151 LDVDNLEVEVLFLERD 166 (172)
T ss_pred EEcCCCEEEEEEeecc
Confidence 9999887777665443
No 30
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.28 E-value=1.4e-10 Score=116.53 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcccee
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
++|++++|+|.+.... + ......++++++.+.+.++|+||++|||++.... ......+.++|+++.
T Consensus 1 f~~~~~~D~q~~~~~~-~---~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-~~~~~~~~~~~~~l~--------- 66 (214)
T cd07399 1 FTLAVLPDTQYYTESY-P---EVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-DAEWEAADKAFARLD--------- 66 (214)
T ss_pred CEEEEecCCCcCCcCC-H---HHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-HHHHHHHHHHHHHHH---------
Confidence 5899999999975522 1 1223467889999999999999999999997652 334455556666541
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCC
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD 129 (630)
+.++|+++++||||
T Consensus 67 -----------------------~~~~p~~~~~GNHD 80 (214)
T cd07399 67 -----------------------KAGIPYSVLAGNHD 80 (214)
T ss_pred -----------------------HcCCcEEEECCCCc
Confidence 24799999999999
No 31
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.27 E-value=2.6e-11 Score=123.48 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=53.7
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceee
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQV 93 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~ 93 (630)
||+++||+|+++...+ ....++.+++.+.+.++|+||++|||++... . ....++.|.+.
T Consensus 1 ki~~iSDlH~~~~~~~------~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~---~-~~~~~~~l~~~----------- 59 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFD------TEEMLETLAQYLKKQKIDHLHIAGDISNDFQ---R-SLPFIEKLQEL----------- 59 (239)
T ss_pred CEEEEEeecCCCCCCC------HHHHHHHHHHHHHhcCCCEEEECCccccchh---h-HHHHHHHHHHh-----------
Confidence 6999999999753322 2345788999898899999999999998631 1 12233333321
Q ss_pred echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 94 VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 94 lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
.++|||+|+||||..
T Consensus 60 -----------------------~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 60 -----------------------KGIKVTFNAGNHDML 74 (239)
T ss_pred -----------------------cCCcEEEECCCCCCC
Confidence 258999999999976
No 32
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.22 E-value=4.8e-11 Score=121.12 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=48.5
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHH-HHHHHHHHhcCCCEEEEcCCCCCCC---CCChHHHHHHHHHHHhhccCCCccc
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAF-EEICSIAEQKEVDFVLLGGDLFHEN---KPSRSTLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tF-eeil~~A~~~~VD~VLlaGDLFd~~---~Ps~~tl~~~~~~Lr~l~~g~~p~~ 90 (630)
++|+||+|+|....+ ..+.| +.+.+.+ .+||+|+++||+||.. .+.......+.+.|+++.
T Consensus 1 ~~~iSDlHl~~~~~~------~~~~~l~~l~~~~--~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~------- 65 (231)
T TIGR01854 1 TLFISDLHLSPERPD------ITALFLDFLREEA--RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVS------- 65 (231)
T ss_pred CeEEEecCCCCCChh------HHHHHHHHHHhhh--ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHH-------
Confidence 379999999964321 12223 2233332 2899999999999942 111222334455555541
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~ 132 (630)
..++|||+|+||||...
T Consensus 66 -------------------------~~~~~v~~v~GNHD~~~ 82 (231)
T TIGR01854 66 -------------------------DQGVPCYFMHGNRDFLI 82 (231)
T ss_pred -------------------------HCCCeEEEEcCCCchhh
Confidence 34689999999999753
No 33
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.21 E-value=1.3e-10 Score=121.82 Aligned_cols=94 Identities=23% Similarity=0.301 Sum_probs=62.8
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCC-CCCChHHHHHHHHHHHhhccCC
Q 006814 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE-NKPSRSTLVKAIEILRRHCLND 86 (630)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~-~~Ps~~tl~~~~~~Lr~l~~g~ 86 (630)
......||+|+||+|..... ....+.+..+++ +.+|+|+++||+++. ..+... .++..|.++
T Consensus 40 ~~~~~~~iv~lSDlH~~~~~---------~~~~~~~~~i~~-~~~DlivltGD~~~~~~~~~~~---~~~~~L~~L---- 102 (284)
T COG1408 40 ASLQGLKIVQLSDLHSLPFR---------EEKLALLIAIAN-ELPDLIVLTGDYVDGDRPPGVA---ALALFLAKL---- 102 (284)
T ss_pred cccCCeEEEEeehhhhchhh---------HHHHHHHHHHHh-cCCCEEEEEeeeecCCCCCCHH---HHHHHHHhh----
Confidence 34567899999999998543 122334444444 455999999999995 444433 456666654
Q ss_pred CccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCC
Q 006814 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN 147 (630)
Q Consensus 87 ~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~g 147 (630)
....+||+|.||||..........-+++...+
T Consensus 103 -----------------------------~~~~gv~av~GNHd~~~~~~~~~~~~l~~~~~ 134 (284)
T COG1408 103 -----------------------------KAPLGVFAVLGNHDYGVDRSNVYIGDLLEELG 134 (284)
T ss_pred -----------------------------hccCCEEEEecccccccccccchhhhhhhhcc
Confidence 46789999999999987654322224555544
No 34
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.12 E-value=2e-09 Score=112.19 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCC-hHHHHHHHHHHHhhccCCCc
Q 006814 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS-RSTLVKAIEILRRHCLNDRP 88 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps-~~tl~~~~~~Lr~l~~g~~p 88 (630)
...+||++++|+|.+.. .+..+++.+.+. ..++||||++|||.+..... .......++.+..+
T Consensus 2 ~~~~~f~v~gD~~~~~~--------~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~------ 65 (294)
T cd00839 2 DTPFKFAVFGDMGQNTN--------NSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPL------ 65 (294)
T ss_pred CCcEEEEEEEECCCCCC--------CcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHH------
Confidence 45699999999998622 123455555543 47999999999998654321 12233444444443
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006814 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (630)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~ 133 (630)
...+|+++++||||....
T Consensus 66 ---------------------------~~~~P~~~~~GNHD~~~~ 83 (294)
T cd00839 66 ---------------------------ASYVPYMVTPGNHEADYN 83 (294)
T ss_pred ---------------------------HhcCCcEEcCcccccccC
Confidence 236899999999998654
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.10 E-value=6.2e-10 Score=113.55 Aligned_cols=65 Identities=29% Similarity=0.323 Sum_probs=45.8
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcccee
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
+||+++||+|..+.. ...+.+.+.+||+||++||+.+.. ...++.|+++
T Consensus 1 ~rIa~isDiHg~~~~--------------~~~~~l~~~~pD~Vl~~GDi~~~~-------~~~~~~l~~l---------- 49 (238)
T cd07397 1 LRIAIVGDVHGQWDL--------------EDIKALHLLQPDLVLFVGDFGNES-------VQLVRAISSL---------- 49 (238)
T ss_pred CEEEEEecCCCCchH--------------HHHHHHhccCCCEEEECCCCCcCh-------HHHHHHHHhC----------
Confidence 589999999975421 112355667899999999998642 1233444432
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~ 133 (630)
..|+|+|.||||....
T Consensus 50 -------------------------~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 50 -------------------------PLPKAVILGNHDAWYD 65 (238)
T ss_pred -------------------------CCCeEEEcCCCccccc
Confidence 4699999999998654
No 36
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.10 E-value=1.3e-09 Score=111.31 Aligned_cols=213 Identities=20% Similarity=0.269 Sum_probs=112.4
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCCCCCh-HHHHHHHHHHHhhccCCCccc
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~~Ps~-~tl~~~~~~Lr~l~~g~~p~~ 90 (630)
++|+|+||+| |....- -..-.+..+..+++..+++++| ++|.+||+++...++. ......++.|..
T Consensus 1 l~i~~~sD~h-g~~~~~--~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~--------- 68 (252)
T cd00845 1 LTILHTNDLH-GHFEPA--GGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNA--------- 68 (252)
T ss_pred CEEEEecccc-cCcccc--CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHh---------
Confidence 5899999999 543210 0111356788888888888899 7789999998765532 111223333332
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCC-ccceeEEE
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSG-VGEITVYP 169 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~-~~~i~~~P 169 (630)
.++ .+++.||||...+...+ .+.+...+. .+++........ .....+.|
T Consensus 69 --------------------------~g~-d~~~~GNHe~d~g~~~l--~~~~~~~~~-~~l~aNv~~~~~~~~~~~~~~ 118 (252)
T cd00845 69 --------------------------LGY-DAVTIGNHEFDYGLDAL--AELYKDANF-PVLSANLYDKDTGTGPPWAKP 118 (252)
T ss_pred --------------------------cCC-CEEeeccccccccHHHH--HHHHHhCCC-CEEEEeeeccCCCCCCCCcCC
Confidence 233 34556999986654432 234444442 111110000000 00011223
Q ss_pred -EEEeeCCeeEEEEecCCCChHHHH-------hhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCcccccccc
Q 006814 170 -ILIRKGSTAVALYGLGNIRDERLN-------RMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF 241 (630)
Q Consensus 170 -i~l~kg~~~valyGl~~i~derl~-------~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~i~e~~ 241 (630)
..+..++.+|++.|+......... -.+.. ..+.+.... ........+.|++.|...... ..+.+.
T Consensus 119 ~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~D~vIvl~H~g~~~~---~~la~~- 191 (252)
T cd00845 119 YKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFED--LAEAVAVAE-ELLAEGADVIILLSHLGLDDD---EELAEE- 191 (252)
T ss_pred eEEEEECCEEEEEEEeccccceeecCCCcccCceecC--HHHHHHHHH-HHHhCCCCEEEEEeccCccch---HHHHhc-
Confidence 245667899999998644221100 00011 011110000 001134679999999975431 011111
Q ss_pred CCCCCcEEEeCcccccccCCeecCCCCceEEcCCCC
Q 006814 242 LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (630)
Q Consensus 242 l~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~ 277 (630)
+ .++|+|+.||.|..+..+... .+..++|+|+-
T Consensus 192 ~-~giDlvlggH~H~~~~~~~~~--~~~~v~~~g~~ 224 (252)
T cd00845 192 V-PGIDVILGGHTHHLLEEPEVV--NGTLIVQAGKY 224 (252)
T ss_pred C-CCccEEEcCCcCcccCCCccc--CCEEEEeCChh
Confidence 2 579999999999976543232 35688888763
No 37
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.08 E-value=6e-09 Score=107.81 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=58.4
Q ss_pred HHhhcChhhhhhhcCCCceEEEEEccCCCCCCCcc---ccc---cccC-CCCCcEEEeCcccccccCCeecCCCCceEEc
Q 006814 201 AVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKN---AIN---EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQ 273 (630)
Q Consensus 201 ~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~---~i~---e~~l-~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~y 273 (630)
.++|+...... ....+.|++.|.+........ ... ..++ ..++++|++||.|...... ....+...+-
T Consensus 153 Q~~wL~~~L~~---~~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~--~~~~~~~~i~ 227 (277)
T cd07378 153 QLAWLEKTLAA---STADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIK--DDGSGTSFVV 227 (277)
T ss_pred HHHHHHHHHHh---cCCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeee--cCCCCcEEEE
Confidence 46677554321 123578999999875432211 111 1223 2458999999999876431 1111334444
Q ss_pred CCCCcc--ccccc----------CccCCcEEEEEEEeCCceEEEEEEC
Q 006814 274 PGSSVA--TSLIE----------GESKPKHVLLLEIKENQYRPTKIPL 309 (630)
Q Consensus 274 PGS~~~--ts~~e----------gE~~~Kgv~lleI~~~~~~~e~IpL 309 (630)
.|+.-. ....+ ......|+.+++|.++.+.++++..
T Consensus 228 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~ 275 (277)
T cd07378 228 SGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDA 275 (277)
T ss_pred eCCCcccCCCCCccCcccccccccccCCCCEEEEEEecCEEEEEEECC
Confidence 444321 11100 0124589999999999888888764
No 38
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.05 E-value=9.2e-10 Score=105.49 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~P 67 (630)
|+++||+|++...... .+...+.+.++|+|+++||+++...+
T Consensus 1 ~~~iSDlH~~~~~~~~-----------~~~~~~~~~~~d~li~~GDi~~~~~~ 42 (166)
T cd07404 1 IQYLSDLHLEFEDNLA-----------DLLNFPIAPDADILVLAGDIGYLTDA 42 (166)
T ss_pred CceEccccccCccccc-----------cccccCCCCCCCEEEECCCCCCCcch
Confidence 5799999998743221 11144567899999999999987543
No 39
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.05 E-value=2.1e-09 Score=110.48 Aligned_cols=80 Identities=31% Similarity=0.430 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcccee
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
|||+|+||+|++. ...+....++.+++.++..++|+|+++|||.+.. .......+.++|++.
T Consensus 1 ~~i~~isD~H~~~------~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~--~~~~~~~~~~~l~~~---------- 62 (301)
T COG1409 1 MRIAHISDLHLGA------LGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDG--EPEEYRRLKELLARL---------- 62 (301)
T ss_pred CeEEEEecCcccc------cccchHHHHHHHHHHHhcCCCCEEEEccCcCCCC--CHHHHHHHHHHHhhc----------
Confidence 7999999999995 2334567788888888889999999999999984 334444455555421
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~ 133 (630)
....|+++++||||....
T Consensus 63 -----------------------~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 63 -----------------------ELPAPVIVVPGNHDARVV 80 (301)
T ss_pred -----------------------cCCCceEeeCCCCcCCch
Confidence 346799999999998764
No 40
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.03 E-value=5.7e-09 Score=117.65 Aligned_cols=50 Identities=24% Similarity=0.385 Sum_probs=36.9
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH---------hcCCCEEEEcCCCCCC
Q 006814 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE---------QKEVDFVLLGGDLFHE 64 (630)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~---------~~~VD~VLlaGDLFd~ 64 (630)
.....++|+++||+|+|..... ...|+.+++... ..++|.|+++||+|+.
T Consensus 239 ~~~~~~~i~~ISDlHlgs~~~~-------~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~ 297 (504)
T PRK04036 239 TKDEKVYAVFISDVHVGSKEFL-------EDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDG 297 (504)
T ss_pred cCCCccEEEEEcccCCCCcchh-------HHHHHHHHHHHhCCCccchhhhhcCCEEEEeCccccc
Confidence 3456689999999999975421 133455555554 7789999999999996
No 41
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.02 E-value=1.5e-09 Score=100.79 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHh
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~ 81 (630)
||+++||+|..+. .....++|+|+++||+++...+ ..+..+.++|++
T Consensus 1 ~i~~isD~H~~~~-------------------~~~~~~~D~vi~~GD~~~~~~~--~~~~~~~~~l~~ 47 (135)
T cd07379 1 RFVCISDTHSRHR-------------------TISIPDGDVLIHAGDLTERGTL--EELQKFLDWLKS 47 (135)
T ss_pred CEEEEeCCCCCCC-------------------cCcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHh
Confidence 6899999997742 1234689999999999987543 334455566654
No 42
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.00 E-value=3.5e-09 Score=108.25 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCCcEEEeCcccccccCCeecCCCCceEEcCCCCc
Q 006814 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (630)
Q Consensus 244 ~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~ 278 (630)
...|++++||.|.+... .. .+..+++|||-.
T Consensus 190 ~~p~vii~Gh~h~~~~~--~~--~~~~~vn~Gsf~ 220 (243)
T cd07386 190 EVPDILHTGHVHVYGVG--VY--RGVLLVNSGTWQ 220 (243)
T ss_pred CCCCEEEECCCCchHhE--EE--CCEEEEECCCCc
Confidence 45799999999998653 22 257899999975
No 43
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=99.00 E-value=7.1e-10 Score=107.57 Aligned_cols=83 Identities=27% Similarity=0.363 Sum_probs=58.9
Q ss_pred EEEcCCCCCCCCC----c-hhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccc
Q 006814 16 LVATDCHLGYMEK----D-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 16 Lh~SD~HLG~~~~----d-~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~ 90 (630)
|++||+|||+... + .....+...+++.+.+++.+.++|.|+++||+||...+..........++..
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~--------- 71 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRL--------- 71 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHh---------
Confidence 6899999998542 1 1233444578899999999999999999999999765544332222222211
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
...++||++|.||||..
T Consensus 72 ------------------------~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 72 ------------------------LAKDVDVILIRGNHDGG 88 (172)
T ss_pred ------------------------ccCCCeEEEEcccCccc
Confidence 13578999999999974
No 44
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.96 E-value=1.1e-08 Score=106.58 Aligned_cols=218 Identities=18% Similarity=0.272 Sum_probs=110.5
Q ss_pred cEEEEEcCCCCCCCCCch-----hchhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChHH-------HHHHHHHH
Q 006814 13 VRILVATDCHLGYMEKDE-----IRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-------LVKAIEIL 79 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~-----~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~t-------l~~~~~~L 79 (630)
++|||++|+| |+.+... ....-.+..+..+++..+++++|.|++ +||+|+.+..+... ....+++|
T Consensus 1 l~il~t~D~H-g~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLH-GNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccc-cceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHH
Confidence 5899999999 6543210 001123566788888888889999998 99999864211110 01233444
Q ss_pred HhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecC
Q 006814 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGG 159 (630)
Q Consensus 80 r~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~ 159 (630)
+. .+.. ++..||||...+...+ .+++...+. .+++......
T Consensus 80 n~-----------------------------------~g~d-~~~lGNHe~d~g~~~l--~~~~~~~~~-~~l~aNv~~~ 120 (277)
T cd07410 80 NA-----------------------------------LGYD-AGTLGNHEFNYGLDYL--DKVIKQANF-PVLSANVIDA 120 (277)
T ss_pred Hh-----------------------------------cCCC-EEeecccCcccCHHHH--HHHHHhCCC-CEEEEEEEeC
Confidence 32 2344 4556999976554332 234444432 1111110000
Q ss_pred CCccceeEEEE-EEeeC-CeeEEEEecCCCChHHH-------HhhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCC
Q 006814 160 SGVGEITVYPI-LIRKG-STAVALYGLGNIRDERL-------NRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (630)
Q Consensus 160 ~~~~~i~~~Pi-~l~kg-~~~valyGl~~i~derl-------~~~f~~~-~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~ 229 (630)
....-.+.|. +++.+ +.+|++.|+-....... .-.|.++ ..+++..+.... ..-.+-|++.|....
T Consensus 121 -~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~ 196 (277)
T cd07410 121 -DTGEPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFE 196 (277)
T ss_pred -CCCCcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcC
Confidence 0001113453 45677 89999999853211000 0001111 011111111111 124588999999765
Q ss_pred CCCCccccc----cccCC--CCCcEEEeCcccccccCCeecCCCCceEEcCCCC
Q 006814 230 KTNPKNAIN----EHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (630)
Q Consensus 230 ~~~~~~~i~----e~~l~--~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~ 277 (630)
........+ ..+.. .++|+|+.||.|.....+ . ..+..++++|+-
T Consensus 197 ~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~-~--~~~~~v~q~g~~ 247 (277)
T cd07410 197 RDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPGP-T--VNGVPVVQPGNW 247 (277)
T ss_pred CCcccccCCccHHHHHHhcCCCCcEEEeCCCccccccC-C--cCCEEEEcCChh
Confidence 421000011 11221 469999999999876432 1 234678888753
No 45
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.93 E-value=6.1e-09 Score=104.21 Aligned_cols=228 Identities=23% Similarity=0.368 Sum_probs=97.9
Q ss_pred ccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccce
Q 006814 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (630)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~ 91 (630)
+=|||-+||.|-. +..++.++..+.+.++|+|+++|||.-...-+.+ ..++... ++. -||+.-.
T Consensus 5 ~~kilA~s~~~g~------------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e-~~~a~~~-~r~--p~k~~i~ 68 (255)
T PF14582_consen 5 VRKILAISNFRGD------------FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDE-YERAQEE-QRE--PDKSEIN 68 (255)
T ss_dssp --EEEEEE--TT-------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHH-HHHHHHT-T------THHHH
T ss_pred chhheeecCcchH------------HHHHHHHHhhccccCCCEEEEeccccccchhhhH-HHHHhhh-ccC--cchhhhh
Confidence 3479999999875 5778899999999999999999999754321111 1100000 000 0111000
Q ss_pred ee---echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhh----hCCceeEccceeecCCCccc
Q 006814 92 QV---VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILS----ACNLVNYFGKMVLGGSGVGE 164 (630)
Q Consensus 92 ~~---lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~----~~glVn~fg~~~l~~~~~~~ 164 (630)
+- .+..-.+|.+.++ ..++|+++||||||.|... .+. +.+. .++..+.-. .
T Consensus 69 ~e~~~~~e~~~~ff~~L~---------~~~~p~~~vPG~~Dap~~~-~lr--~a~~~e~v~p~~~~vH~----------s 126 (255)
T PF14582_consen 69 EEECYDSEALDKFFRILG---------ELGVPVFVVPGNMDAPERF-FLR--EAYNAEIVTPHIHNVHE----------S 126 (255)
T ss_dssp HHHHHHHHHHHHHHHHHH---------CC-SEEEEE--TTS-SHHH-HHH--HHHHCCCC-TTEEE-CT----------C
T ss_pred hhhhhhHHHHHHHHHHHH---------hcCCcEEEecCCCCchHHH-HHH--HHhccceeccceeeeee----------e
Confidence 00 0000012222222 4689999999999998631 111 1111 111111110 0
Q ss_pred eeEEEEEEeeCCeeEEEEecCCC-------ChHHHHhhhc-ChhHHhhcChhhhhhhcCCCceEEEEEccCCC-CCC---
Q 006814 165 ITVYPILIRKGSTAVALYGLGNI-------RDERLNRMFQ-TPHAVQWMRPEAQEECQVSDWFNILVLHQNRV-KTN--- 232 (630)
Q Consensus 165 i~~~Pi~l~kg~~~valyGl~~i-------~derl~~~f~-~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~-~~~--- 232 (630)
+...+| .+.+.|+|-. ....|..-+- ....++++.. ....-.|+++|.+.. ..+
T Consensus 127 -----f~~~~g--~y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~e-------lk~~r~IlLfhtpPd~~kg~~h 192 (255)
T PF14582_consen 127 -----FFFWKG--EYLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKFLRE-------LKDYRKILLFHTPPDLHKGLIH 192 (255)
T ss_dssp -----EEEETT--TEEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGG-------CTSSEEEEEESS-BTBCTCTBT
T ss_pred -----ecccCC--cEEEEecCccccCCCccccccccchHHHHHHHHHHHHh-------cccccEEEEEecCCccCCCccc
Confidence 111222 2334454321 1111110000 0011222321 235578999999872 211
Q ss_pred -CccccccccC-CCCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEeCCceEEE
Q 006814 233 -PKNAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305 (630)
Q Consensus 233 -~~~~i~e~~l-~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~~~~~e 305 (630)
....+. +++ .-..+++++||+|+.... .++ + ...|++|||. .+| .+.+|++.+.++...
T Consensus 193 ~GS~~V~-dlIk~~~P~ivl~Ghihe~~~~-e~l-G-~TlVVNPGsL-----~~G-----~yAvI~l~~~~v~~g 253 (255)
T PF14582_consen 193 VGSAAVR-DLIKTYNPDIVLCGHIHESHGK-ESL-G-KTLVVNPGSL-----AEG-----DYAVIDLEQDKVEFG 253 (255)
T ss_dssp TSBHHHH-HHHHHH--SEEEE-SSS-EE---EEE-T-TEEEEE--BG-----GGT-----EEEEEETTTTEEEEE
T ss_pred ccHHHHH-HHHHhcCCcEEEecccccchhh-HHh-C-CEEEecCccc-----ccC-----ceeEEEecccccccC
Confidence 111121 222 235799999999997642 334 3 4799999986 222 699999988776543
No 46
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.87 E-value=1.2e-08 Score=98.58 Aligned_cols=77 Identities=26% Similarity=0.232 Sum_probs=47.5
Q ss_pred EEEcCCCCCCCCCc--hhch-hcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccc
Q 006814 16 LVATDCHLGYMEKD--EIRR-HDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 16 Lh~SD~HLG~~~~d--~~r~-~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~ 90 (630)
.++||+|+|+...- +.+. .+.-...+.+++...+. ++|.|+++||+++...+.. ..+.|+++
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~-----~~~~l~~~-------- 68 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGT-----ELELLSRL-------- 68 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHH-----HHHHHHhC--------
Confidence 47899999985310 0111 11111234455554443 7999999999999765432 14444432
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~ 132 (630)
+.|+++|+||||...
T Consensus 69 ---------------------------~~~~~~v~GNHD~~~ 83 (168)
T cd07390 69 ---------------------------NGRKHLIKGNHDSSL 83 (168)
T ss_pred ---------------------------CCCeEEEeCCCCchh
Confidence 458999999999753
No 47
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.87 E-value=4.3e-09 Score=106.92 Aligned_cols=83 Identities=27% Similarity=0.294 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCCCCCCch-----hchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCC
Q 006814 13 VRILVATDCHLGYMEKDE-----IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~-----~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~ 87 (630)
-+.|++||+|||+...-. ....+..++++.+.+++.+.+||.|+++||+||...+. .+...+.++|+.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~-~~~~~~~~~l~~~----- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG-LEWRFIREFIEVT----- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh-HHHHHHHHHHHhc-----
Confidence 468999999999854211 22235557889999999999999999999999987654 4444455566542
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
..++++|+||||..
T Consensus 89 ------------------------------~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 89 ------------------------------FRDLILIRGNHDAL 102 (225)
T ss_pred ------------------------------CCcEEEECCCCCCc
Confidence 35999999999963
No 48
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.85 E-value=5.2e-09 Score=104.05 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=29.1
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q 006814 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE 64 (630)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~ 64 (630)
+++||+|+|...... ...+...+....+.++|.|+++||+||.
T Consensus 1 ~~iSDlHlg~~~~~~------~~~~~~~~~~~~~~~~~~lvl~GDi~d~ 43 (217)
T cd07398 1 LFISDLHLGDGGPAA------DFLLLFLLAALALGEADALYLLGDIFDL 43 (217)
T ss_pred CEeeeecCCCCCCCH------HHHHHHHHhhhccCCCCEEEEeccEEEE
Confidence 479999999765432 1223333322225799999999999985
No 49
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.85 E-value=2.9e-08 Score=102.53 Aligned_cols=213 Identities=19% Similarity=0.262 Sum_probs=109.2
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCCCCChH-HHHHHHHHHHhhccCCCccc
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRS-TLVKAIEILRRHCLNDRPVQ 90 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~~Ps~~-tl~~~~~~Lr~l~~g~~p~~ 90 (630)
++|||++|+| +..... ....-.+..+..+++..+++++| ++|.+||+|+..-.+.. .....++.|+.+
T Consensus 1 ~~il~~nd~~-~~~~~~-~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l-------- 70 (257)
T cd07406 1 FTILHFNDVY-EIAPLD-GGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL-------- 70 (257)
T ss_pred CeEEEEccce-eecccC-CCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc--------
Confidence 5899999999 433211 01111356677888888888888 99999999986532211 011233444332
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccce-eEE-
Q 006814 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI-TVY- 168 (630)
Q Consensus 91 ~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i-~~~- 168 (630)
+. .+++.||||...+...+ ..++...+. .+++........-..+ .+.
T Consensus 71 ---------------------------~~-d~~~~GNHefd~g~~~l--~~~~~~~~~-~~L~aNi~~~~~~~~~~~~~~ 119 (257)
T cd07406 71 ---------------------------GV-DLACFGNHEFDFGEDQL--QKRLGESKF-PWLSSNVFDATGGGPLPNGKE 119 (257)
T ss_pred ---------------------------CC-cEEeecccccccCHHHH--HHHHhhCCC-CEEEEEEEECCCCcccCCCCC
Confidence 22 36678999986654432 234444432 1111110000000001 011
Q ss_pred EEEEeeCCeeEEEEecCCCChH-HH-----HhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccC
Q 006814 169 PILIRKGSTAVALYGLGNIRDE-RL-----NRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFL 242 (630)
Q Consensus 169 Pi~l~kg~~~valyGl~~i~de-rl-----~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~i~e~~l 242 (630)
...++.++.+|++.|+-..... .+ .-.|.+ .++.+...........-.+-|++.|...... ..+... +
T Consensus 120 ~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~d---~~la~~-~ 193 (257)
T cd07406 120 SAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRD--YVETARELVDELREQGADLIIALTHMRLPND---KRLARE-V 193 (257)
T ss_pred eEEEEECCeEEEEEEEecccccccccCCCCcceEcC--HHHHHHHHHHHHHhCCCCEEEEEeccCchhh---HHHHHh-C
Confidence 2445678899999998543211 00 000111 1111111000000123468899999974311 112222 2
Q ss_pred CCCCcEEEeCcccccccCCeecCCCCceEEcCCCC
Q 006814 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (630)
Q Consensus 243 ~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~ 277 (630)
.++|+|+.||.|..+. ... .+..+++||+-
T Consensus 194 -~~iD~IlgGH~H~~~~--~~~--~~t~vv~~g~~ 223 (257)
T cd07406 194 -PEIDLILGGHDHEYIL--VQV--GGTPIVKSGSD 223 (257)
T ss_pred -CCCceEEecccceeEe--eeE--CCEEEEeCCcC
Confidence 4699999999999763 222 24678888753
No 50
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.80 E-value=5.6e-08 Score=100.69 Aligned_cols=226 Identities=17% Similarity=0.196 Sum_probs=117.2
Q ss_pred cEEEEEcCCCCCCCCCchh----------chhcHHHHHHHHHHHHHhc-CCCEEE-EcCCCCCCCCCChH-HHHHHHHHH
Q 006814 13 VRILVATDCHLGYMEKDEI----------RRHDSFEAFEEICSIAEQK-EVDFVL-LGGDLFHENKPSRS-TLVKAIEIL 79 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~----------r~~Ds~~tFeeil~~A~~~-~VD~VL-laGDLFd~~~Ps~~-tl~~~~~~L 79 (630)
++|||++|+|--+...... ...-.+..+..+++.++++ ++|.|+ .+||+|+.+..+.. .....+++|
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l 80 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDAL 80 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHH
Confidence 5799999999976442211 0111366788888888888 999885 59999987532210 011222333
Q ss_pred HhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecC
Q 006814 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGG 159 (630)
Q Consensus 80 r~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~ 159 (630)
+. +++.++.||||...+...+ ..+++..+. .+++.....
T Consensus 81 ~~-------------------------------------~g~da~~GNHefd~g~~~l--~~~~~~~~~-~~l~aN~~~- 119 (264)
T cd07411 81 NA-------------------------------------LGVDAMVGHWEFTYGPERV--RELFGRLNW-PFLAANVYD- 119 (264)
T ss_pred Hh-------------------------------------hCCeEEecccccccCHHHH--HHHHhhCCC-CEEEEEEEe-
Confidence 21 4444544999976654432 234444442 111111000
Q ss_pred CCccceeEEEE-EEeeCCeeEEEEecCCCChHHHH-------hhhcChhHHhhcChhhhhh-hcCCCceEEEEEccCCCC
Q 006814 160 SGVGEITVYPI-LIRKGSTAVALYGLGNIRDERLN-------RMFQTPHAVQWMRPEAQEE-CQVSDWFNILVLHQNRVK 230 (630)
Q Consensus 160 ~~~~~i~~~Pi-~l~kg~~~valyGl~~i~derl~-------~~f~~~~~v~~l~p~~~~~-~~~~~~fnIlvlHq~~~~ 230 (630)
.......+.|. +++.++.+|++.|+......... -.|.+ .++.+....... ......+-|++.|.....
T Consensus 120 ~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~ 197 (264)
T cd07411 120 DEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGI--REEELQEVVVKLRREEGVDVVVLLSHNGLPV 197 (264)
T ss_pred CCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECC--HHHHHHHHHHHHHHhCCCCEEEEEecCCchh
Confidence 00011113343 34778899999998654211100 00111 011111100000 012357899999997532
Q ss_pred CCCccccccccCCCCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccccccCccCCcEEEEEEEe
Q 006814 231 TNPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIK 298 (630)
Q Consensus 231 ~~~~~~i~e~~l~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~ 298 (630)
. ..+.+. + .++|+|+.||.|.....|.. ...+..++|+|+- -+.+..|++.
T Consensus 198 ~---~~la~~-~-~~iDlilgGH~H~~~~~~~~-~~~~t~v~~~g~~-----------~~~vg~i~l~ 248 (264)
T cd07411 198 D---VELAER-V-PGIDVILSGHTHERTPKPII-AGGGTLVVEAGSH-----------GKFLGRLDLD 248 (264)
T ss_pred h---HHHHhc-C-CCCcEEEeCcccccccCccc-ccCCEEEEEcCcc-----------ccEEEEEEEE
Confidence 1 111122 2 46999999999986544421 1234678888753 4456666553
No 51
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.78 E-value=2.4e-07 Score=95.69 Aligned_cols=217 Identities=18% Similarity=0.242 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHH-HHHHHHHHHhhccCCCccce
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQF 91 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~t-l~~~~~~Lr~l~~g~~p~~~ 91 (630)
++|||++|+|......+. ..-.+..+..+++.++++..+++|.+||+|+....+..+ ....+++|.
T Consensus 1 i~il~~~D~H~~~~~~~~--~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln----------- 67 (257)
T cd07408 1 ITILHTNDIHGRIDEDDN--NGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMN----------- 67 (257)
T ss_pred CEEEEeccCcccccCCCC--ccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHH-----------
Confidence 689999999954332211 011244566666666655778999999999864322110 012223332
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCccceeEEEEE
Q 006814 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (630)
Q Consensus 92 ~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi~ 171 (630)
..++-+++ .||||...+...+ .+++...+. -+++...... ..+.-.+.|..
T Consensus 68 ------------------------~~g~d~~~-~GNHefd~G~~~l--~~~~~~~~~-~~l~aNv~~~-~~~~~~~~py~ 118 (257)
T cd07408 68 ------------------------AVGYDAVT-PGNHEFDYGLDRL--KELSKEADF-PFLSANVYDN-DTGKRVFKPYK 118 (257)
T ss_pred ------------------------hcCCcEEc-cccccccCCHHHH--HHHHhhCCC-CEEEEEEEEc-CCCCcccCCEE
Confidence 23555654 5999976554322 233443332 1222111000 00111134533
Q ss_pred -EeeC-CeeEEEEecCCCCh------HHHH-hhhcChhHHhhcChh-hhhhhcCCCceEEEEEccCCCCCCCc-c--ccc
Q 006814 172 -IRKG-STAVALYGLGNIRD------ERLN-RMFQTPHAVQWMRPE-AQEECQVSDWFNILVLHQNRVKTNPK-N--AIN 238 (630)
Q Consensus 172 -l~kg-~~~valyGl~~i~d------erl~-~~f~~~~~v~~l~p~-~~~~~~~~~~fnIlvlHq~~~~~~~~-~--~i~ 238 (630)
+..+ +.+|++.|+-...- .... -.|.++ ++.+... ........-.+-|++.|.......+. . .+
T Consensus 119 i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~~~~~~l- 195 (257)
T cd07408 119 IKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDP--IEEAKKVIVAALKAKGADVIVALGHLGVDRTSSPWTSTEL- 195 (257)
T ss_pred EEEcCCCCEEEEEeecCcCcccccCccccCCcEEecH--HHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCCccHHHH-
Confidence 3566 88999999753210 0000 001111 1111111 00000123568899999986543111 0 11
Q ss_pred cccCCCCCcEEEeCcccccccCCeecCCCCceEEcCCC
Q 006814 239 EHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (630)
Q Consensus 239 e~~l~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS 276 (630)
...+ .++|+|+.||.|.....+. ....+..++|+|+
T Consensus 196 a~~~-~giDvIigGH~H~~~~~~~-~~~~~~~ivq~g~ 231 (257)
T cd07408 196 AANV-TGIDLIIDGHSHTTIEIGK-KDGNNVLLTQTGA 231 (257)
T ss_pred HHhC-CCceEEEeCCCcccccCcc-cccCCeEEEcCCh
Confidence 1122 4699999999999765321 1123467888875
No 52
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.78 E-value=1.2e-07 Score=99.65 Aligned_cols=218 Identities=23% Similarity=0.294 Sum_probs=107.9
Q ss_pred cEEEEEcCCCCCCCCCch---hchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCCCCChHHH---HHHHHHHHhhccC
Q 006814 13 VRILVATDCHLGYMEKDE---IRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRSTL---VKAIEILRRHCLN 85 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~---~r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~~Ps~~tl---~~~~~~Lr~l~~g 85 (630)
++|||++|+| |+..... ....-.+..+..+++..+++.++ ++|.+||+|..+ |....+ ...+++|+.
T Consensus 1 i~il~tnD~H-g~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs-~~~s~~~~g~~~~~~~n~---- 74 (288)
T cd07412 1 VQILAINDFH-GRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGAS-PFESALLQDEPTIEALNA---- 74 (288)
T ss_pred CeEEEEeccc-cCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccc-cchhhcccCCcHHHHHHh----
Confidence 5899999999 5433211 01111356677888888877776 889999999643 221111 123333332
Q ss_pred CCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhh----------------CCce
Q 006814 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA----------------CNLV 149 (630)
Q Consensus 86 ~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~----------------~glV 149 (630)
.++-+ +..||||.-.+...+ .+.+.. ++ .
T Consensus 75 -------------------------------~g~Da-~t~GNHefd~G~~~l--~~~~~~~~~~~~~~~~~~~~~~a~-f 119 (288)
T cd07412 75 -------------------------------MGVDA-SAVGNHEFDEGYAEL--LRRINGGCHPTTGCQAGYPFPGAN-F 119 (288)
T ss_pred -------------------------------hCCee-eeecccccccCHHHH--HHHHhccCCccccccccccCcCCC-C
Confidence 24444 555999986654432 222221 11 1
Q ss_pred eEccceeecCCCccceeEEEE-EEeeCCeeEEEEecCCCC------hHHH-HhhhcCh-hHHhhcChhhhhhhcCCCceE
Q 006814 150 NYFGKMVLGGSGVGEITVYPI-LIRKGSTAVALYGLGNIR------DERL-NRMFQTP-HAVQWMRPEAQEECQVSDWFN 220 (630)
Q Consensus 150 n~fg~~~l~~~~~~~i~~~Pi-~l~kg~~~valyGl~~i~------derl-~~~f~~~-~~v~~l~p~~~~~~~~~~~fn 220 (630)
.+++...... ....--+.|. .+..++.+|+|.|+-... ...+ .-.|.++ ..++.+.+... ...-.+-
T Consensus 120 p~l~aNv~~~-~~~~~~~~py~i~~~~G~kIgviGl~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr---~~~~D~I 195 (288)
T cd07412 120 PYLAANVYDK-GTGTPALPPYTIKDVGGVKVGFIGAVTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELK---AGGVDAI 195 (288)
T ss_pred CEEEEeEEec-CCCCcccCCEEEEEECCEEEEEEeecCCCccceeccccccCceEcCHHHHHHHHHHHHH---HCCCCEE
Confidence 1111111000 0001112343 346788999999983211 0000 0011111 01111111111 0134688
Q ss_pred EEEEccCCCCCCCcc---ccc---cc---cCCCCCcEEEeCcccccccCCeecCCCCceEEcCCC
Q 006814 221 ILVLHQNRVKTNPKN---AIN---EH---FLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (630)
Q Consensus 221 IlvlHq~~~~~~~~~---~i~---e~---~l~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS 276 (630)
|++.|.......... ... .+ .+..++|+|+.||.|.....|.. ...+..++|||+
T Consensus 196 IvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~~~~-~~~~~~v~q~g~ 259 (288)
T cd07412 196 VVLAHEGGSTKGGDDTCSAASGPIADIVNRLDPDVDVVFAGHTHQAYNCTVP-AGNPRLVTQAGS 259 (288)
T ss_pred EEEeCCCCCCCCCCccccccChhHHHHHhhcCCCCCEEEeCccCcccccccc-CcCCEEEEecCh
Confidence 999999875321110 000 11 12357999999999997643211 123568889885
No 53
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.73 E-value=5.9e-08 Score=86.37 Aligned_cols=69 Identities=32% Similarity=0.495 Sum_probs=48.2
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeec
Q 006814 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVS 95 (630)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~ls 95 (630)
++++|+|.+...... ... .....+.++|+||++||+++...+........ +..+
T Consensus 1 ~~~gD~h~~~~~~~~---------~~~-~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~---~~~~------------- 54 (131)
T cd00838 1 AVISDIHGNLEALEA---------VLE-AALAAAEKPDFVLVLGDLVGDGPDPEEVLAAA---LALL------------- 54 (131)
T ss_pred CeeecccCCccchHH---------HHH-HHHhcccCCCEEEECCcccCCCCCchHHHHHH---HHHh-------------
Confidence 579999999654211 000 45667789999999999999988765533222 1111
Q ss_pred hhhhhcccccCccccCCCCCCCCCcEEEEcCCCC
Q 006814 96 DQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (630)
Q Consensus 96 d~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD 129 (630)
.+..+|++++.||||
T Consensus 55 -------------------~~~~~~~~~~~GNHD 69 (131)
T cd00838 55 -------------------LLLGIPVYVVPGNHD 69 (131)
T ss_pred -------------------hcCCCCEEEeCCCce
Confidence 246899999999999
No 54
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.70 E-value=4.3e-08 Score=94.02 Aligned_cols=86 Identities=23% Similarity=0.260 Sum_probs=49.5
Q ss_pred EEEcCCCCCCCCCchh-ch-hcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCCh-HHHHHHHHHHHhhccCCCcccee
Q 006814 16 LVATDCHLGYMEKDEI-RR-HDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 16 Lh~SD~HLG~~~~d~~-r~-~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~-~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
+++||+||+....... .. ..-+...+.+...+.+.+||+|+++|||||...+.. ......+..+.+..
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMF--------- 71 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHh---------
Confidence 4689999975433221 00 000112223334456679999999999999865432 22223333333321
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
. ...++|+++|+||||..
T Consensus 72 -------------~--------~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 72 -------------G--------HPPDLPLHVVVGNHDIG 89 (156)
T ss_pred -------------c--------cCCCCeEEEEcCCCCcC
Confidence 0 01368999999999963
No 55
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.64 E-value=4.5e-07 Score=94.93 Aligned_cols=200 Identities=18% Similarity=0.233 Sum_probs=101.1
Q ss_pred cEEEEEcCCCCCCCCCchh---------chhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChHH-HHHHHHHHHh
Q 006814 13 VRILVATDCHLGYMEKDEI---------RRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-LVKAIEILRR 81 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~---------r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~t-l~~~~~~Lr~ 81 (630)
++|||++|+|--....+.. ...-.+..+..+++.++++.++.|++ +||+|+.+..+... -...+++|+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln- 79 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMN- 79 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHH-
Confidence 5899999999754322110 01113566777888888778886555 99999875332110 112223333
Q ss_pred hccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCC
Q 006814 82 HCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSG 161 (630)
Q Consensus 82 l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~ 161 (630)
..++.+.++ ||||...+...+. +.+...+ ..+++.......+
T Consensus 80 ----------------------------------~~g~D~~~l-GNHefd~G~~~l~--~~~~~~~-~p~l~aNv~~~~~ 121 (281)
T cd07409 80 ----------------------------------LLGYDAMTL-GNHEFDDGVEGLA--PFLNNLK-FPVLSANIDTSNE 121 (281)
T ss_pred ----------------------------------hcCCCEEEe-ccccccCCHHHHH--HHHHhCC-CCEEEEeeecCCC
Confidence 235566655 9999887655432 2333333 1222221100000
Q ss_pred --ccceeEEE-EEEeeCCeeEEEEecCCCChHHHHh-----hhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCC
Q 006814 162 --VGEITVYP-ILIRKGSTAVALYGLGNIRDERLNR-----MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP 233 (630)
Q Consensus 162 --~~~i~~~P-i~l~kg~~~valyGl~~i~derl~~-----~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~ 233 (630)
...-.+.| ..+..++.+|+|.|+-......... .|.++ ++.++....+-....-.+-|++.|......
T Consensus 122 ~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~--~~~~~~~v~~lr~~~~D~II~l~H~G~~~d-- 197 (281)
T cd07409 122 PPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDE--IEAAQKEADKLKAQGVNKIIALSHSGYEVD-- 197 (281)
T ss_pred ccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCH--HHHHHHHHHHHHhcCCCEEEEEeccCchhH--
Confidence 00011344 3456788999999985432111100 01111 111111000000012467899999975321
Q ss_pred ccccccccCCCCCcEEEeCcccccc
Q 006814 234 KNAINEHFLPRFLDFVVWGHEHECL 258 (630)
Q Consensus 234 ~~~i~e~~l~~~~DyVa~GH~H~~~ 258 (630)
..+.+. + .++|+|+.||.|...
T Consensus 198 -~~la~~-~-~giD~IiggH~H~~~ 219 (281)
T cd07409 198 -KEIARK-V-PGVDVIVGGHSHTFL 219 (281)
T ss_pred -HHHHHc-C-CCCcEEEeCCcCccc
Confidence 112222 2 469999999999975
No 56
>PLN02533 probable purple acid phosphatase
Probab=98.59 E-value=5e-07 Score=100.11 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=49.4
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcc
Q 006814 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~ 89 (630)
...+||++++|+|.+... ...++.+.+.++||||++|||.....- ......+++++..+
T Consensus 137 ~~~~~f~v~GDlG~~~~~-------------~~tl~~i~~~~pD~vl~~GDl~y~~~~-~~~wd~f~~~i~~l------- 195 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEWT-------------KSTLEHVSKWDYDVFILPGDLSYANFY-QPLWDTFGRLVQPL------- 195 (427)
T ss_pred CCCeEEEEEEeCCCCccc-------------HHHHHHHHhcCCCEEEEcCccccccch-HHHHHHHHHHhhhH-------
Confidence 467999999998754211 234445567899999999999875321 11112233444332
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
...+|+++++||||..
T Consensus 196 --------------------------~s~~P~m~~~GNHE~~ 211 (427)
T PLN02533 196 --------------------------ASQRPWMVTHGNHELE 211 (427)
T ss_pred --------------------------hhcCceEEeCcccccc
Confidence 2468999999999975
No 57
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=6.6e-08 Score=97.78 Aligned_cols=79 Identities=27% Similarity=0.326 Sum_probs=51.2
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC---CCChHHHHHHHHHHHhhccCCCcccee
Q 006814 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN---KPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~---~Ps~~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
+.+||+|||..... .-..|.+.++.-- .+.|.|.+.||+||.- .+.......+...|+++.
T Consensus 1 lFISDlHL~~~~p~------~t~~fl~Fl~~~a-~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a--------- 64 (237)
T COG2908 1 LFISDLHLGPKRPA------LTAFFLDFLREEA-AQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA--------- 64 (237)
T ss_pred CeeeccccCCCCcH------HHHHHHHHHHhcc-ccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHH---------
Confidence 47899999955432 1234555443322 2569999999999862 222333445555555542
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~ 133 (630)
..|.|||.||||||.-.+
T Consensus 65 -----------------------~~G~~v~~i~GN~Dfll~ 82 (237)
T COG2908 65 -----------------------RKGTRVYYIHGNHDFLLG 82 (237)
T ss_pred -----------------------hcCCeEEEecCchHHHHH
Confidence 568999999999996544
No 58
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=9e-07 Score=90.59 Aligned_cols=245 Identities=22% Similarity=0.351 Sum_probs=126.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHH---HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhcc
Q 006814 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFE---AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCL 84 (630)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~---tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~ 84 (630)
.+++.++||++.||=.-- +|+ .-.++-+++.+.++||||-.||=|-.+.+.-.
T Consensus 39 ~~dgslsflvvGDwGr~g----------~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~-------------- 94 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRRG----------SFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSE-------------- 94 (336)
T ss_pred CCCCceEEEEEcccccCC----------chhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCC--------------
Confidence 466789999999996321 122 23455677889999999999998765543211
Q ss_pred CCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCC-cchHHHhhhhC--------------Cce
Q 006814 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVD-NLSAVDILSAC--------------NLV 149 (630)
Q Consensus 85 g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~-~ls~ldiL~~~--------------glV 149 (630)
-| -.|+..|..+ |.+|-+.. |+|+|.||||+-.... .+++ +|... ..|
T Consensus 95 ----------~D--p~Fq~sF~nI-YT~pSLQk--pWy~vlGNHDyrGnV~AQls~--~l~~~d~RW~c~rsf~~~ae~v 157 (336)
T KOG2679|consen 95 ----------ND--PRFQDSFENI-YTAPSLQK--PWYSVLGNHDYRGNVEAQLSP--VLRKIDKRWICPRSFYVDAEIV 157 (336)
T ss_pred ----------CC--hhHHhhhhhc-ccCccccc--chhhhccCccccCchhhhhhH--HHHhhccceecccHHhhcceee
Confidence 01 1244444444 56666544 9999999999864322 1221 12221 112
Q ss_pred eEccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCC
Q 006814 150 NYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (630)
Q Consensus 150 n~fg~~~l~~~~~~~i~~~Pi~l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~ 229 (630)
..|+... ..+...-+.+..+ .+|-..-... |. .+.+ ....|+.-...+ ....+.|.+-|.++.
T Consensus 158 e~f~v~~------~~f~~d~~~~~~~----~~ydw~~v~P-R~-~~~~--~~l~~le~~L~~---S~a~wkiVvGHh~i~ 220 (336)
T KOG2679|consen 158 EMFFVDT------TPFMDDTFTLCTD----DVYDWRGVLP-RV-KYLR--ALLSWLEVALKA---SRAKWKIVVGHHPIK 220 (336)
T ss_pred eeecccc------ccchhhheecccc----cccccccCCh-HH-HHHH--HHHHHHHHHHHH---hhcceEEEeccccee
Confidence 2222100 0000000001000 1121111111 11 1111 123344332221 245689999999875
Q ss_pred C---CCCccccccccCC----CCCcEEEeCcccccccCCeecCCCCceEEcCCCCcccc------cccCc----cCCcEE
Q 006814 230 K---TNPKNAINEHFLP----RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATS------LIEGE----SKPKHV 292 (630)
Q Consensus 230 ~---~~~~~~i~e~~l~----~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~~ts------~~egE----~~~Kgv 292 (630)
. |+++..+..+++| .++|+.+.||-|.-+-......+.++.+.-.||---.+ +..++ -..+|+
T Consensus 221 S~~~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g~~~~~~~~p~~lkF~YdgqGf 300 (336)
T KOG2679|consen 221 SAGHHGPTKELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRGTDHNPEVNPKELKFYYDGQGF 300 (336)
T ss_pred hhhccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCCCccCCccChhheEEeeCCCce
Confidence 4 6777666666666 68999999999975432110111122222333332211 21111 134688
Q ss_pred EEEEEeCCceEEEEEECC
Q 006814 293 LLLEIKENQYRPTKIPLT 310 (630)
Q Consensus 293 ~lleI~~~~~~~e~IpL~ 310 (630)
+-+++...+.++.++...
T Consensus 301 msv~is~~e~~vvfyD~~ 318 (336)
T KOG2679|consen 301 MSVEISHSEARVVFYDVS 318 (336)
T ss_pred EEEEEecceeEEEEEecc
Confidence 888888877777777653
No 59
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=98.55 E-value=7.3e-07 Score=93.89 Aligned_cols=103 Identities=18% Similarity=0.369 Sum_probs=62.5
Q ss_pred CCCCCccEEEEEcCCCCCCCCC----chhchh-c---HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHH
Q 006814 7 EDIANTVRILVATDCHLGYMEK----DEIRRH-D---SFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEI 78 (630)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~----d~~r~~-D---s~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~ 78 (630)
..+.+++|||.+||+|+|.... |..-.+ + -.+|-..+=+....++||+|+++||+..... ...+..-.|+.
T Consensus 48 ~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~-t~Da~~sl~kA 126 (379)
T KOG1432|consen 48 FREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHS-TQDAATSLMKA 126 (379)
T ss_pred ecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccc-cHhHHHHHHHH
Confidence 4567899999999999998621 111111 0 1223333334446789999999999988732 22221111111
Q ss_pred HHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHh
Q 006814 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDI 142 (630)
Q Consensus 79 Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldi 142 (630)
+. |-+..+||..++-||||+.+....+..+++
T Consensus 127 va--------------------------------P~I~~~IPwA~~lGNHDdes~ltr~ql~~~ 158 (379)
T KOG1432|consen 127 VA--------------------------------PAIDRKIPWAAVLGNHDDESDLTRLQLMKF 158 (379)
T ss_pred hh--------------------------------hHhhcCCCeEEEecccccccccCHHHHHHH
Confidence 11 224679999999999999875443333333
No 60
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.53 E-value=1.8e-07 Score=91.19 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=54.2
Q ss_pred EEEcCCCCCCCCCch---------hchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChH-HHHHHHHHHHhhccC
Q 006814 16 LVATDCHLGYMEKDE---------IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS-TLVKAIEILRRHCLN 85 (630)
Q Consensus 16 Lh~SD~HLG~~~~d~---------~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~-tl~~~~~~Lr~l~~g 85 (630)
|++||.||+.....+ .+.......++.+-..+.+.+||+|++.|||||...+... ......+.++++.
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~-- 78 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIF-- 78 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHh--
Confidence 468999999754222 1222223334444455568899999999999999776432 3333444444321
Q ss_pred CCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 86 ~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
...+ ....++|+++|+||||..
T Consensus 79 --------------------~~~~----~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 79 --------------------FLPS----NGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred --------------------cccc----cccCCceEEEECCccccC
Confidence 0000 001368999999999974
No 61
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.51 E-value=2.9e-07 Score=85.41 Aligned_cols=33 Identities=33% Similarity=0.287 Sum_probs=23.1
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 006814 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF 62 (630)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLF 62 (630)
+++||+| |.. ..++++... ..++|+|+++||+.
T Consensus 1 ~viSDtH-~~~-----------~~~~~~~~~--~~~~d~ii~~GD~~ 33 (129)
T cd07403 1 LVISDTE-SPA-----------LYSPEIKVR--LEGVDLILSAGDLP 33 (129)
T ss_pred Ceecccc-Ccc-----------ccchHHHhh--CCCCCEEEECCCCC
Confidence 5789999 531 133444432 68899999999973
No 62
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=98.50 E-value=1.5e-05 Score=86.99 Aligned_cols=101 Identities=12% Similarity=0.034 Sum_probs=58.5
Q ss_pred CceEEEEEccCCCCCCC---ccccccccCC----CCCcEEEeCcccccccCCeecCCCCceEEcCCCC--ccc-cc----
Q 006814 217 DWFNILVLHQNRVKTNP---KNAINEHFLP----RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS--VAT-SL---- 282 (630)
Q Consensus 217 ~~fnIlvlHq~~~~~~~---~~~i~e~~l~----~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~--~~t-s~---- 282 (630)
..+.|++.|.++...+. ...+...++| .++|++++||.|.-+.. ...+...+-.|+- ... ..
T Consensus 213 a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i----~~~gt~yIvSGaGs~~~~~~~~~~~ 288 (394)
T PTZ00422 213 ADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVL----TDEGTAHINCGSGGNSGRKSIMKNS 288 (394)
T ss_pred CCeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEe----cCCCceEEEeCccccccCCCCCCCC
Confidence 35899999999875332 2222222222 57999999999986543 2222333333331 111 00
Q ss_pred -ccCccCCcEEEEEEEeCCceEEEEEECCCCCcEEEEEEE
Q 006814 283 -IEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEII 321 (630)
Q Consensus 283 -~egE~~~Kgv~lleI~~~~~~~e~IpL~tvRpf~~~ei~ 321 (630)
..-.....|++.+++..+.+.++++.-..-..+....+.
T Consensus 289 ~s~F~~~~~GF~~~~l~~~~l~~~fid~~~GkvL~~~~~~ 328 (394)
T PTZ00422 289 KSLFYSEDIGFCIHELNAEGMVTKFVSGNTGEVLYTHKQP 328 (394)
T ss_pred CcceecCCCCEEEEEEecCEEEEEEEeCCCCcEEEEeeec
Confidence 000124578999999999999999963334545444433
No 63
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.42 E-value=1.3e-05 Score=84.13 Aligned_cols=201 Identities=19% Similarity=0.265 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----CC-CEEEEcCCCCCCCCCChHH-HHHHHHHHHhhccCC
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----EV-DFVLLGGDLFHENKPSRST-LVKAIEILRRHCLND 86 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~----~V-D~VLlaGDLFd~~~Ps~~t-l~~~~~~Lr~l~~g~ 86 (630)
++|||++|+|--....+.. .-.+..+..+++.++++ ++ -++|-+||+|...-.+... -.-.+++|+.
T Consensus 1 ltIl~tnD~Hg~l~~~~~~--~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~----- 73 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTG--EYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNL----- 73 (285)
T ss_pred CEEEEEcccccccccCCCC--CccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHh-----
Confidence 5899999999765432211 11233445555555543 33 4888999999653222110 0112223322
Q ss_pred CccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceeecCCCcccee
Q 006814 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEIT 166 (630)
Q Consensus 87 ~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~ 166 (630)
.++-+.++ ||||.-.+...+. .++...+. .+++....... +.-.
T Consensus 74 ------------------------------~g~Da~~~-GNHEfD~G~~~L~--~~~~~~~f-p~l~aNv~~~~--g~~~ 117 (285)
T cd07405 74 ------------------------------VGYDAMAV-GNHEFDNPLEVLR--QQMKWANF-PLLSANIYQES--GERL 117 (285)
T ss_pred ------------------------------hCCcEEee-cccccccCHHHHH--HHHhhCCC-CEEEEEEEecC--CCCc
Confidence 34555555 9999877755432 22222221 11111110000 1111
Q ss_pred EEE-EEEeeCCeeEEEEecCCCChHHHH-------hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCCCCC-----
Q 006814 167 VYP-ILIRKGSTAVALYGLGNIRDERLN-------RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN----- 232 (630)
Q Consensus 167 ~~P-i~l~kg~~~valyGl~~i~derl~-------~~f~~~-~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~----- 232 (630)
+.| +.+..++.+|++.|+-......+. -.|.++ ..++.+.+.... ..-.+-|++.|.......
T Consensus 118 ~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lk~---~~~D~VI~lsH~G~~~~~~~~~~ 194 (285)
T cd07405 118 FKPYALFDLGGLKIAVIGLTTDDTAKIGNPAYFEGIEFRPPIHEAKEVVPELKQ---EKPDIVIAATHMGHYDNGEHGSN 194 (285)
T ss_pred cCCeEEEEECCEEEEEEEecccccccccCcCCcCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecccccCCcccccc
Confidence 344 345678899999998543211100 001110 001111111110 134688999999864321
Q ss_pred -Ccc-ccccccCCCCCcEEEeCccccccc
Q 006814 233 -PKN-AINEHFLPRFLDFVVWGHEHECLI 259 (630)
Q Consensus 233 -~~~-~i~e~~l~~~~DyVa~GH~H~~~i 259 (630)
+.. .+...+...++|+|+.||.|....
T Consensus 195 ~~~~~~lA~~~~~~giD~IigGHsH~~~~ 223 (285)
T cd07405 195 APGDVEMARALPAGGLDLIVGGHSQDPVC 223 (285)
T ss_pred CchHHHHHHhcCCCCCCEEEeCCCCcccc
Confidence 000 111222235799999999999763
No 64
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.39 E-value=4.3e-06 Score=83.04 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=19.1
Q ss_pred HhcCCCEEEEcCCCCCCCCCChHH
Q 006814 48 EQKEVDFVLLGGDLFHENKPSRST 71 (630)
Q Consensus 48 ~~~~VD~VLlaGDLFd~~~Ps~~t 71 (630)
...+||.|++.||||++.+-+-+.
T Consensus 41 ~~l~Pd~V~fLGDLfd~~w~~D~e 64 (193)
T cd08164 41 FWLKPDAVVVLGDLFSSQWIDDEE 64 (193)
T ss_pred HhcCCCEEEEeccccCCCcccHHH
Confidence 446899999999999987655443
No 65
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.35 E-value=5.2e-06 Score=102.51 Aligned_cols=212 Identities=18% Similarity=0.183 Sum_probs=108.2
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChHH-HHHHHHHHHhhccCCC
Q 006814 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-LVKAIEILRRHCLNDR 87 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~t-l~~~~~~Lr~l~~g~~ 87 (630)
...++|||++|+| |... .+..+..+++..+++++|.|++ +||+|+.+-.+... ....+++|+.+
T Consensus 658 ~~~l~Il~~nD~H-g~l~--------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l----- 723 (1163)
T PRK09419 658 NWELTILHTNDFH-GHLD--------GAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEM----- 723 (1163)
T ss_pred ceEEEEEEEeecc-cCCC--------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCc-----
Confidence 3459999999999 4331 2445677788888889999988 99999875222100 11233333321
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCC-----------ceeEcccee
Q 006814 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN-----------LVNYFGKMV 156 (630)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~g-----------lVn~fg~~~ 156 (630)
+ .-+++.||||...+...+ ..++...+ ..-+.+...
T Consensus 724 ------------------------------g-~d~~~~GNHEfd~g~~~l--~~~l~~~~~~~~~~~~~~~~fp~l~aNv 770 (1163)
T PRK09419 724 ------------------------------G-YDASTFGNHEFDWGPDVL--PDWLKGGGDPKNRHQFEKPDFPFVASNI 770 (1163)
T ss_pred ------------------------------C-CCEEEecccccccChHHH--HHHHHhcccccccccccCCCCCEEEEEE
Confidence 2 235689999987665432 23444333 011111100
Q ss_pred ecCCCccce-eEEEE-EEeeCCeeEEEEecCCCC------hHHH-HhhhcCh-hHHhhcChhhhhhhcCCCceEEEEEcc
Q 006814 157 LGGSGVGEI-TVYPI-LIRKGSTAVALYGLGNIR------DERL-NRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQ 226 (630)
Q Consensus 157 l~~~~~~~i-~~~Pi-~l~kg~~~valyGl~~i~------derl-~~~f~~~-~~v~~l~p~~~~~~~~~~~fnIlvlHq 226 (630)
.....-... .+.|. .+..++.+|+|.|+-... .... .-.|.++ ..++.+.+...+ ...-.+-|++.|.
T Consensus 771 ~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~--~~~~D~VV~LsH~ 848 (1163)
T PRK09419 771 YVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKE--KEKVDAIIALTHL 848 (1163)
T ss_pred EeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHh--hcCCCEEEEEecC
Confidence 000000011 12343 346788999999984221 0000 0012111 001111111110 0134578999999
Q ss_pred CCCCCCCc--c---ccccccCCCCCcEEEeCcccccccCCeecCCCCceEEcCCC
Q 006814 227 NRVKTNPK--N---AINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (630)
Q Consensus 227 ~~~~~~~~--~---~i~e~~l~~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS 276 (630)
........ . .+. .-+ .++|+|+-||.|..... .+ .+..|+++|+
T Consensus 849 G~~~d~~~~~~~~~~lA-~~v-~gIDvIigGHsH~~~~~--~v--~~~~ivqag~ 897 (1163)
T PRK09419 849 GSNQDRTTGEITGLELA-KKV-KGVDAIISAHTHTLVDK--VV--NGTPVVQAYK 897 (1163)
T ss_pred CccccccccccHHHHHH-HhC-CCCCEEEeCCCCccccc--cC--CCEEEEeCCh
Confidence 76432110 0 011 112 35999999999997542 22 3467888875
No 66
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.34 E-value=5.3e-06 Score=86.07 Aligned_cols=57 Identities=28% Similarity=0.261 Sum_probs=35.7
Q ss_pred HhcCCCEEEEcCCCCCCCCCChHH-HHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcC
Q 006814 48 EQKEVDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHG 126 (630)
Q Consensus 48 ~~~~VD~VLlaGDLFd~~~Ps~~t-l~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~G 126 (630)
...+||+||++|||||..+..... ....++.+.+. |..+ ...+||++|+|
T Consensus 42 ~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i----------------------~~~~-------~~~~pv~~VpG 92 (257)
T cd08163 42 KQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRI----------------------FDPS-------PGRKMVESLPG 92 (257)
T ss_pred HhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHH----------------------hcCC-------CccceEEEeCC
Confidence 346899999999999987654321 11122223222 1111 23589999999
Q ss_pred CCCCCCC
Q 006814 127 NHDDPAG 133 (630)
Q Consensus 127 NHD~p~~ 133 (630)
|||.+.+
T Consensus 93 NHDig~~ 99 (257)
T cd08163 93 NHDIGFG 99 (257)
T ss_pred CcccCCC
Confidence 9998654
No 67
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.27 E-value=1.8e-06 Score=87.70 Aligned_cols=57 Identities=32% Similarity=0.325 Sum_probs=39.8
Q ss_pred ccEEEEEcCCCCCCCCCchhch-----hcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCC
Q 006814 12 TVRILVATDCHLGYMEKDEIRR-----HDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS 68 (630)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~-----~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps 68 (630)
.-+.|++||+||||...-..++ -+.-.+...+-.++..++|+.|++.||++|.-.++
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~ 80 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKS 80 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCcc
Confidence 4578999999999864221111 12223344444477899999999999999997664
No 68
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=98.26 E-value=2.7e-06 Score=89.27 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=47.6
Q ss_pred hcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChHH-------HHHHHHHHHhhccCCCccceeeechhhhhcccc
Q 006814 34 HDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRST-------LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNK 104 (630)
Q Consensus 34 ~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~t-------l~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~ 104 (630)
+-.+..++.+++.+++. ++||||++||+.++....... ...+.+.|+++
T Consensus 49 D~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~---------------------- 106 (296)
T cd00842 49 DSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKA---------------------- 106 (296)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHh----------------------
Confidence 33478899999999988 999999999999876543221 22233333332
Q ss_pred cCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006814 105 FGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (630)
Q Consensus 105 ~~~lny~d~n~~~~iPVf~I~GNHD~p~ 132 (630)
-.++|||.+.||||...
T Consensus 107 -----------~~~~pv~~~~GNHD~~p 123 (296)
T cd00842 107 -----------FPDTPVYPALGNHDSYP 123 (296)
T ss_pred -----------CCCCCEEEcCCCCCCCc
Confidence 24789999999999854
No 69
>PHA02239 putative protein phosphatase
Probab=98.16 E-value=5.8e-06 Score=84.68 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChHHHHHHHH
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIE 77 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~ 77 (630)
|||+++||+|.. +..|+++++.+... ..|.|++.||++|....+..++..+++
T Consensus 1 m~~~~IsDIHG~------------~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~ 55 (235)
T PHA02239 1 MAIYVVPDIHGE------------YQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFD 55 (235)
T ss_pred CeEEEEECCCCC------------HHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHH
Confidence 799999999943 45678888877543 369999999999987666654444444
No 70
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.10 E-value=0.00025 Score=80.62 Aligned_cols=238 Identities=19% Similarity=0.211 Sum_probs=118.1
Q ss_pred CCCCCCccEEEEEcCCCCCCCCCchhch---hcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChH--HHHHHHHHH
Q 006814 6 REDIANTVRILVATDCHLGYMEKDEIRR---HDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRS--TLVKAIEIL 79 (630)
Q Consensus 6 ~~~~~~~mKILh~SD~HLG~~~~d~~r~---~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~--tl~~~~~~L 79 (630)
.......++|||++|+|-.....+.... .-.+.....+++..+++.. -++|.+||+|+.+-++.. -....+++|
T Consensus 20 ~~~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~m 99 (517)
T COG0737 20 AAAETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLL 99 (517)
T ss_pred cccCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHH
Confidence 3445667999999999987652221111 1134444455555555554 578999999998655432 112233444
Q ss_pred HhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCc----eeEccce
Q 006814 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKM 155 (630)
Q Consensus 80 r~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~gl----Vn~fg~~ 155 (630)
..+ +.- ++.-|||+...+.+.+. +++..... -|++..
T Consensus 100 N~m-----------------------------------~yD-a~tiGNHEFd~g~~~l~--~~~~~~~fp~l~aNv~~~- 140 (517)
T COG0737 100 NAL-----------------------------------GYD-AMTLGNHEFDYGLEALA--RLLDEAKFPVLSANVYDK- 140 (517)
T ss_pred hhc-----------------------------------CCc-EEeecccccccCHHHHH--HHHhccCCceEEeeeEec-
Confidence 332 223 35567999877654322 22222211 111111
Q ss_pred eecCCCccceeEEEE-EEeeCCeeEEEEecC--CCChHH-HH----hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEcc
Q 006814 156 VLGGSGVGEITVYPI-LIRKGSTAVALYGLG--NIRDER-LN----RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQ 226 (630)
Q Consensus 156 ~l~~~~~~~i~~~Pi-~l~kg~~~valyGl~--~i~der-l~----~~f~~~-~~v~~l~p~~~~~~~~~~~fnIlvlHq 226 (630)
......-+.|. ++..++.+|++.|+- .+.--. .. -.|.++ ..++...++... ..-..-|++.|.
T Consensus 141 ----~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~---~~vD~iI~LsH~ 213 (517)
T COG0737 141 ----NSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKG---EGVDVIIALSHL 213 (517)
T ss_pred ----CCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHh---cCCCEEEEEecc
Confidence 00111123453 356788999999985 221100 00 011111 011111122111 114688999999
Q ss_pred CCCCCCCcc-cccc--ccCCCCCcEEEeCcccccccCCeec-CCCCceEEcCCCCcccccccCccCCcEEEEEEEeCC
Q 006814 227 NRVKTNPKN-AINE--HFLPRFLDFVVWGHEHECLIDPQEV-PGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKEN 300 (630)
Q Consensus 227 ~~~~~~~~~-~i~e--~~l~~~~DyVa~GH~H~~~i~p~~~-~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~~ 300 (630)
....-.... ..+. ......+|.++.||.|.-+..+... ...+..++|+|+ ..|.+..|+|.-+
T Consensus 214 G~~~d~~~~~~~~~~~~~~~~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag~-----------~gk~vG~~di~~d 280 (517)
T COG0737 214 GIEDDLELASEVPGDVDVAVPGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAGE-----------YGKYVGVLDITFD 280 (517)
T ss_pred CcCccccccccccccccccccCcceEeccCCcccccCCcccCccCCEEEEccCh-----------hhCceeEEEEEEc
Confidence 875421100 0000 0011239999999999654332210 112456777764 3566777777643
No 71
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.04 E-value=7.4e-05 Score=78.59 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=33.4
Q ss_pred CceEEEEEccCCCCCCCc----cccccccCCCCCc-EEEeCcccccccCCeecCCCCceEEcCCCC
Q 006814 217 DWFNILVLHQNRVKTNPK----NAINEHFLPRFLD-FVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (630)
Q Consensus 217 ~~fnIlvlHq~~~~~~~~----~~i~e~~l~~~~D-yVa~GH~H~~~i~p~~~~~~~~~I~yPGS~ 277 (630)
-.+-|++.|......... ..+. ..+|. +| +++.||.|..... .+. .+..++|||+-
T Consensus 188 ~DvIIvlsH~G~~~d~~~~~~~~~la-~~~~~-id~~Ii~GHsH~~~~~--~~~-~~~~ivq~G~~ 248 (282)
T cd07407 188 VDLILVLGHMPVRDDAEFKVLHDAIR-KIFPD-TPIQFLGGHSHVRDFT--QYD-SSSTGLESGRY 248 (282)
T ss_pred CCEEEEEeCCCCCCCccHHHHHHHHH-HhCCC-CCEEEEeCCcccccce--ecc-CcEEEEeccch
Confidence 468899999987543111 1111 12333 56 7999999976432 222 24678888853
No 72
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.00 E-value=1.4e-05 Score=87.98 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=36.1
Q ss_pred CCCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHH--HhcCCCEEEEcCCCCCC
Q 006814 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIA--EQKEVDFVLLGGDLFHE 64 (630)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A--~~~~VD~VLlaGDLFd~ 64 (630)
....+.++.+++||+|.|..+. ..+.|..|-+-+..- ...+|-.+++|||+.|.
T Consensus 220 ~~~~e~v~v~~isDih~GSk~F----~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDG 275 (481)
T COG1311 220 NTGDERVYVALISDIHRGSKEF----LEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDG 275 (481)
T ss_pred CCCCcceEEEEEeeeecccHHH----HHHHHHHHHHHhcCCcccccceEEEEEecccccc
Confidence 3456678999999999998653 223344432222111 34568999999999995
No 73
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.91 E-value=0.00015 Score=83.03 Aligned_cols=207 Identities=18% Similarity=0.264 Sum_probs=100.1
Q ss_pred CCCCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----C-CCEEEEcCCCCCCCCCChHHHH---HHHH
Q 006814 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E-VDFVLLGGDLFHENKPSRSTLV---KAIE 77 (630)
Q Consensus 6 ~~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~----~-VD~VLlaGDLFd~~~Ps~~tl~---~~~~ 77 (630)
.....-.+.|||++|+|--....+. ..-.+..+..+++..+++ + --++|.+||+|..+ | ...+. ..++
T Consensus 28 ~~~~~~~ltil~tnD~Hg~~~~~~~--~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs-~-~s~~~~g~~~i~ 103 (551)
T PRK09558 28 EKDKTYKITILHTNDHHGHFWRNEY--GEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGV-P-ESDLQDAEPDFR 103 (551)
T ss_pred ccCCceEEEEEEecccCCCcccccc--CCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccce-E-hhhhcCCchhHH
Confidence 3344567999999999976543211 001355555666555532 3 34788899999864 2 11121 1222
Q ss_pred HHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceee
Q 006814 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVL 157 (630)
Q Consensus 78 ~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l 157 (630)
+|. ..++-+.++ ||||.-.+...+. .++..+.. .++.....
T Consensus 104 ~mN-----------------------------------~~g~Da~tl-GNHEFD~G~~~L~--~~~~~a~f-p~l~aNv~ 144 (551)
T PRK09558 104 GMN-----------------------------------LIGYDAMAV-GNHEFDNPLSVLR--KQEKWAKF-PFLSANIY 144 (551)
T ss_pred HHh-----------------------------------cCCCCEEcc-cccccCcCHHHHH--HhhccCCC-CEEEEEEE
Confidence 222 234555554 9999877754332 22332221 11111100
Q ss_pred cCCCccceeEEEEE-EeeCCeeEEEEecCCCChHHH------H-hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCC
Q 006814 158 GGSGVGEITVYPIL-IRKGSTAVALYGLGNIRDERL------N-RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNR 228 (630)
Q Consensus 158 ~~~~~~~i~~~Pi~-l~kg~~~valyGl~~i~derl------~-~~f~~~-~~v~~l~p~~~~~~~~~~~fnIlvlHq~~ 228 (630)
.. ..+.-.+.|.. ++.++.+|++.|+-......+ . -.|.++ ..++.+.++..+ ...-.+-|++.|...
T Consensus 145 ~~-~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~--~~~~D~IV~LsH~G~ 221 (551)
T PRK09558 145 QK-STGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQ--TEKPDVIIALTHMGH 221 (551)
T ss_pred EC-CCCCcccCCeEEEEECCEEEEEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHh--ccCCCEEEEEecccc
Confidence 00 00111134433 467889999999843211110 0 011111 001111111110 013467899999887
Q ss_pred CCCCC-ccccc-----cccCC-CCCcEEEeCcccccc
Q 006814 229 VKTNP-KNAIN-----EHFLP-RFLDFVVWGHEHECL 258 (630)
Q Consensus 229 ~~~~~-~~~i~-----e~~l~-~~~DyVa~GH~H~~~ 258 (630)
..... ....+ .+-++ .++|+|+.||.|...
T Consensus 222 ~~~~~~~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 222 YDDGEHGSNAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred ccCCccCCCCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 43210 00001 11233 479999999999864
No 74
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.90 E-value=2.3e-05 Score=82.15 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccce
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~ 91 (630)
|++++++|+|-. +.+|+.+++.+. ..++|.|+++||+++...-|. .++++|.++
T Consensus 1 M~~~vIGDIHG~------------~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~----~vl~~l~~l--------- 55 (275)
T PRK00166 1 MATYAIGDIQGC------------YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSL----EVLRFVKSL--------- 55 (275)
T ss_pred CcEEEEEccCCC------------HHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHH----HHHHHHHhc---------
Confidence 789999999976 567888888764 357999999999999764343 355566542
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCC
Q 006814 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (630)
Q Consensus 92 ~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~ 130 (630)
+.++++|.||||.
T Consensus 56 --------------------------~~~~~~VlGNHD~ 68 (275)
T PRK00166 56 --------------------------GDSAVTVLGNHDL 68 (275)
T ss_pred --------------------------CCCeEEEecChhH
Confidence 3479999999996
No 75
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.89 E-value=9.9e-05 Score=76.87 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=24.6
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH--hcCCCEEEEcCCCCCC
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE--QKEVDFVLLGGDLFHE 64 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~--~~~VD~VLlaGDLFd~ 64 (630)
|.++.|+|-.+ ...|+.+-..-. ..++|+||++||++..
T Consensus 1 i~v~Gd~HG~~-----------~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~ 41 (262)
T cd00844 1 IAVEGCCHGEL-----------DKIYETLEKIEKKEGTKVDLLICCGDFQAV 41 (262)
T ss_pred CEEEecCCccH-----------HHHHHHHHHHHHhcCCCCcEEEEcCCCCCc
Confidence 57899999842 122332222222 2469999999999764
No 76
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.87 E-value=0.00072 Score=70.25 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-----------hcCCCEEEEcCCCCCCCC
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----------QKEVDFVLLGGDLFHENK 66 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-----------~~~VD~VLlaGDLFd~~~ 66 (630)
+|+++||+|+|...... + .|+-+++... ..++-.|++|||+++...
T Consensus 1 ~i~~vSgL~ig~~~~~~----~---~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~ 57 (257)
T cd07387 1 YIALVSGLGLGGNAESS----L---SLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKST 57 (257)
T ss_pred CEEEEcccccCCCccch----H---HHHHHHHHhcCCCCCccccccccceEEEEEECCcccccc
Confidence 47899999999764321 2 3333333332 235668999999999643
No 77
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.86 E-value=5.6e-05 Score=75.30 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=38.2
Q ss_pred HHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcC
Q 006814 47 AEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHG 126 (630)
Q Consensus 47 A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~G 126 (630)
....+||+|+++|||||....+. -.+..+.++++. +-|. ...++|+++|+|
T Consensus 38 ~~~l~PD~Vi~lGDL~D~G~~~~--~~e~~e~l~Rf~-------------------~If~--------~~~~~~~~~VpG 88 (195)
T cd08166 38 LNFVQPDIVIFLGDLMDEGSIAN--DDEYYSYVQRFI-------------------NIFE--------VPNGTKIIYLPG 88 (195)
T ss_pred HhccCCCEEEEeccccCCCCCCC--HHHHHHHHHHHH-------------------HHhc--------CCCCCcEEEECC
Confidence 35568999999999999976543 234555555541 1111 134799999999
Q ss_pred CCCCC
Q 006814 127 NHDDP 131 (630)
Q Consensus 127 NHD~p 131 (630)
|||..
T Consensus 89 NHDIG 93 (195)
T cd08166 89 DNDIG 93 (195)
T ss_pred CCCcC
Confidence 99953
No 78
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.85 E-value=0.00031 Score=74.98 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----C-CCEEEEcCCCCCCC
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E-VDFVLLGGDLFHEN 65 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~----~-VD~VLlaGDLFd~~ 65 (630)
++|||++|+|-.+...+. +..+..+++..+++ + --++|.+||+|...
T Consensus 1 l~IlhtnD~Hg~~~~~gg------~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs 52 (313)
T cd08162 1 LQLLHTSDGESGLLAEDD------APNFSALVNALKDEAAAEYDNTLTLSSGDNFIPG 52 (313)
T ss_pred CeEEEecccccCccccCC------HHHHHHHHHHHHHhhhccCCCeEEEecCccccCc
Confidence 579999999976542221 33344445544432 3 34899999999864
No 79
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.85 E-value=3.3e-05 Score=77.64 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=51.3
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH--------hcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCC
Q 006814 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE--------QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (630)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~--------~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~ 87 (630)
++++|+|-. +.+|+++++.+. ..+.|.+++.||++|...-+.. ++++|.++..
T Consensus 1 ~vi~DIHG~------------~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~----vl~~l~~l~~--- 61 (208)
T cd07425 1 VAIGDLHGD------------LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIE----ILWLLYKLEQ--- 61 (208)
T ss_pred CEEeCccCC------------HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHH----HHHHHHHHHH---
Confidence 468999987 578899998765 4579999999999998644444 4444444310
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
. ....+.+|++|.||||..
T Consensus 62 ---------~----------------~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 62 ---------E----------------AAKAGGKVHFLLGNHELM 80 (208)
T ss_pred ---------H----------------HHhcCCeEEEeeCCCcHH
Confidence 0 013467899999999964
No 80
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.85 E-value=0.00038 Score=86.32 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=39.2
Q ss_pred CccEEEEEcCCCCCCCCCchh----chhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCC
Q 006814 11 NTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHEN 65 (630)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~----r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~ 65 (630)
..++|||++|+|-.....+.. ...-.+..+..+++.+++++++.||+ +||+|..+
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs 99 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGN 99 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCC
Confidence 469999999999765432210 01113556778888888888887777 99999865
No 81
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.80 E-value=0.00054 Score=81.15 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=36.6
Q ss_pred CCccEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCC
Q 006814 10 ANTVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~----~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~ 65 (630)
.-.++|||++|+|--....+. ....-.+..+..+++.++++.. -++|.+||+|..+
T Consensus 37 ~~~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGs 97 (780)
T PRK09418 37 TVNLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGT 97 (780)
T ss_pred ceEEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCc
Confidence 347999999999987543321 0011134455666777776654 3788899999864
No 82
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.76 E-value=0.00033 Score=80.30 Aligned_cols=197 Identities=20% Similarity=0.225 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCCCCCCchh----c-----hhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChHHHHH---HHHHH
Q 006814 13 VRILVATDCHLGYMEKDEI----R-----RHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTLVK---AIEIL 79 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~----r-----~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~tl~~---~~~~L 79 (630)
++|||++|+|--....+.. . ..-.+..+..+++..+++.+ -++|.+||.|..+- ...+.+ .+++|
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~--~~~~~~g~~~i~~~ 78 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTL--YFTLFGGRADAALM 78 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCcc--chhhcCCHHHHHHH
Confidence 5799999999654322110 0 01135566677777765555 47789999997642 111211 22222
Q ss_pred HhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccceee-c
Q 006814 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVL-G 158 (630)
Q Consensus 80 r~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l-~ 158 (630)
..+ + .-++..||||.-.+...+. .++...+. -++..... .
T Consensus 79 N~~-----------------------------------g-~Da~~lGNHEFd~G~~~l~--~~~~~~~f-p~l~aNv~~~ 119 (550)
T TIGR01530 79 NAA-----------------------------------G-FDFFTLGNHEFDAGNEGLK--EFLEPLEI-PVLSANVIPD 119 (550)
T ss_pred hcc-----------------------------------C-CCEEEeccccccCCHHHHH--HHHHhCCC-CEEEEeeecC
Confidence 211 1 2367889999877654432 23333322 11111000 0
Q ss_pred CCCccceeEEE-EEEeeCCeeEEEEecCCCCh--HHH----HhhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCCC
Q 006814 159 GSGVGEITVYP-ILIRKGSTAVALYGLGNIRD--ERL----NRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVK 230 (630)
Q Consensus 159 ~~~~~~i~~~P-i~l~kg~~~valyGl~~i~d--erl----~~~f~~~-~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~ 230 (630)
......-.+.| +.+..++.+|+|.|+--... ... .-.|.++ ..++...+... ...-.+-|++.|.....
T Consensus 120 ~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk---~~g~D~II~lsH~g~~~ 196 (550)
T TIGR01530 120 AASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALK---QQGINKIILLSHAGFEK 196 (550)
T ss_pred CCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHH---hCCCCEEEEEecCCcHH
Confidence 00000001234 33467889999999842110 000 0011111 00111111111 01235779999986432
Q ss_pred CCCccccccccCCCCCcEEEeCcccccc
Q 006814 231 TNPKNAINEHFLPRFLDFVVWGHEHECL 258 (630)
Q Consensus 231 ~~~~~~i~e~~l~~~~DyVa~GH~H~~~ 258 (630)
. ..+. .-+ .++|+|+.||.|...
T Consensus 197 d---~~la-~~~-~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 197 N---CEIA-QKI-NDIDVIVSGDSHYLL 219 (550)
T ss_pred H---HHHH-hcC-CCCCEEEeCCCCccc
Confidence 0 0111 122 369999999999965
No 83
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.76 E-value=0.00014 Score=79.45 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=62.9
Q ss_pred CCCCCCccEEEEEcCCCCCCCCCch--hchhcHH---HHHHHHHHHHH-hcCCCEEEEcCCCCCC-CCCChHHHHHHHHH
Q 006814 6 REDIANTVRILVATDCHLGYMEKDE--IRRHDSF---EAFEEICSIAE-QKEVDFVLLGGDLFHE-NKPSRSTLVKAIEI 78 (630)
Q Consensus 6 ~~~~~~~mKILh~SD~HLG~~~~d~--~r~~Ds~---~tFeeil~~A~-~~~VD~VLlaGDLFd~-~~Ps~~tl~~~~~~ 78 (630)
.++.++.+||+.+||.||==.-.++ ...-|.+ .-+....+.+. -.+||.|++.|||||+ ..-..+...+-.+-
T Consensus 42 ~~~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~R 121 (410)
T KOG3662|consen 42 WASNENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYER 121 (410)
T ss_pred ccCCCCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHH
Confidence 3445789999999999983211111 0111111 11344444443 4689999999999995 45566655555555
Q ss_pred HHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCC
Q 006814 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVD 135 (630)
Q Consensus 79 Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~ 135 (630)
|++. |+ .+-.+|++.|+||||-..+..
T Consensus 122 fkkI----------------------f~--------~k~~~~~~~i~GNhDIGf~~~ 148 (410)
T KOG3662|consen 122 FKKI----------------------FG--------RKGNIKVIYIAGNHDIGFGNE 148 (410)
T ss_pred HHHh----------------------hC--------CCCCCeeEEeCCccccccccc
Confidence 6554 21 135799999999999876543
No 84
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.76 E-value=0.0013 Score=78.24 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=35.8
Q ss_pred CccEEEEEcCCCCCCCCCchh--c--hhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCC
Q 006814 11 NTVRILVATDCHLGYMEKDEI--R--RHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (630)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~--r--~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~ 65 (630)
-.++|||++|+|--....+.. . ..-.+..+..+++.++++... ++|.+||+|..+
T Consensus 114 ~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGS 173 (814)
T PRK11907 114 VDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGT 173 (814)
T ss_pred eEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence 369999999999765433210 0 111244556667777766554 788899999874
No 85
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.75 E-value=0.00045 Score=80.31 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=34.9
Q ss_pred ccEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCC
Q 006814 12 TVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (630)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~----~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~ 65 (630)
.++|||++|+|--....+. ....-.+..+..+++.++++.. -++|-+||+|..+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGs 60 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGS 60 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 4899999999987544321 0011134455666777766543 4778899999864
No 86
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.72 E-value=0.0004 Score=66.26 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=29.7
Q ss_pred CceEEEEEccCCCCCC-CccccccccCCCCCcEEEeCccccccc
Q 006814 217 DWFNILVLHQNRVKTN-PKNAINEHFLPRFLDFVVWGHEHECLI 259 (630)
Q Consensus 217 ~~fnIlvlHq~~~~~~-~~~~i~e~~l~~~~DyVa~GH~H~~~i 259 (630)
+...|++.|.+..+.. +.....+.++..+.++.+-||.|.|.+
T Consensus 107 dg~~~~LsHyP~~~~~~~~~~~r~~y~~~~~~llIHGH~H~~~~ 150 (186)
T COG4186 107 DGEDVYLSHYPRPGQDHPGMESRFDYLRLRVPLLIHGHLHSQFP 150 (186)
T ss_pred CCeEEEEEeCCCCCCCCcchhhhHHHHhccCCeEEecccccccc
Confidence 4468999999876532 222223445667799999999999754
No 87
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.70 E-value=0.0013 Score=76.81 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=36.4
Q ss_pred CCccEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCC
Q 006814 10 ANTVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~----~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~ 65 (630)
.-.++|||++|+|--....+. ....-.+..+..+++.++++.. -++|-+||+|..+
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGs 83 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGS 83 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCc
Confidence 457999999999976543221 0011124455667777776554 3778899999864
No 88
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.67 E-value=7.4e-05 Score=74.67 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCC
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENK 66 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~-~~VD~VLlaGDLFd~~~ 66 (630)
.||+++||+|-. +.+|+++++.+.. .++|.|+++||+++...
T Consensus 1 ~ri~~isDiHg~------------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~ 43 (207)
T cd07424 1 GRDFVVGDIHGH------------YSLLQKALDAVGFDPARDRLISVGDLIDRGP 43 (207)
T ss_pred CCEEEEECCCCC------------HHHHHHHHHHcCCCCCCCEEEEeCCcccCCC
Confidence 479999999943 4678888887753 47999999999998753
No 89
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.65 E-value=8.9e-05 Score=75.61 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH----h------cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhh
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE----Q------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~----~------~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l 82 (630)
|||++++|+|-. +.+|+.+++.+. + .+.|.+++.|||+|...-+.+ ++++|+.+
T Consensus 1 ~~i~vigDIHG~------------~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~e----vl~~l~~l 64 (234)
T cd07423 1 GPFDIIGDVHGC------------YDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPE----VLRLVMSM 64 (234)
T ss_pred CCeEEEEECCCC------------HHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHH----HHHHHHHH
Confidence 689999999987 467888888762 1 147999999999998654554 44555543
No 90
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.49 E-value=0.00017 Score=72.09 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=50.5
Q ss_pred EEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeech
Q 006814 17 VATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSD 96 (630)
Q Consensus 17 h~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd 96 (630)
+++|+|-. +..|..+++.+.....|.+++.||++|...++.+ +++.+..+.
T Consensus 2 ~igDiHg~------------~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~----~l~~l~~~~------------- 52 (225)
T cd00144 2 VIGDIHGC------------LDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVE----VIDLLLALK------------- 52 (225)
T ss_pred EEeCCCCC------------HHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHH----HHHHHHHhc-------------
Confidence 68999954 4678888888877789999999999998776654 444444431
Q ss_pred hhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 97 QAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 97 ~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
.. ..+|++|.||||..
T Consensus 53 ------------------~~-~~~~~~l~GNHe~~ 68 (225)
T cd00144 53 ------------------IL-PDNVILLRGNHEDM 68 (225)
T ss_pred ------------------CC-CCcEEEEccCchhh
Confidence 01 45799999999974
No 91
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.35 E-value=0.00027 Score=71.39 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=40.5
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCChHHHHHHHHHHH
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVKAIEILR 80 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~-~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr 80 (630)
.||.+++|+|-. +.+|+++++.+... +.|.|++.||+.|...-|.. ++++|+
T Consensus 17 ~ri~vigDIHG~------------~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~----vl~~l~ 69 (218)
T PRK11439 17 RHIWLVGDIHGC------------FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR----CLQLLE 69 (218)
T ss_pred CeEEEEEcccCC------------HHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHH----HHHHHH
Confidence 489999999997 56788999887644 78999999999998644443 455554
No 92
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.35 E-value=0.00036 Score=72.53 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=50.0
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceee
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQV 93 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~-~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~ 93 (630)
+.+++|+|-. +.+|+.+++.+.- .+.|.++++||+++...-|. .++++|.++
T Consensus 1 ~yvIGDIHG~------------~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~----evl~~l~~l----------- 53 (257)
T cd07422 1 TYAIGDIQGC------------YDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSL----ETLRFVKSL----------- 53 (257)
T ss_pred CEEEECCCCC------------HHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHH----HHHHHHHhc-----------
Confidence 3679999986 5678999988753 36899999999999764444 355666543
Q ss_pred echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 94 VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 94 lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
+-.+++|.||||..
T Consensus 54 ------------------------~~~v~~VlGNHD~~ 67 (257)
T cd07422 54 ------------------------GDSAKTVLGNHDLH 67 (257)
T ss_pred ------------------------CCCeEEEcCCchHH
Confidence 23689999999963
No 93
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=97.34 E-value=0.0042 Score=69.49 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=61.7
Q ss_pred hHHhhcChhhhhhhcCCCceEEEEEccCCCCCCC--ccc------c-c-c---ccCCC--CCcEEEeCcccccccCCee-
Q 006814 200 HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP--KNA------I-N-E---HFLPR--FLDFVVWGHEHECLIDPQE- 263 (630)
Q Consensus 200 ~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~--~~~------i-~-e---~~l~~--~~DyVa~GH~H~~~i~p~~- 263 (630)
..++||...... ..+...|+++|++...... .++ . . + ++|.. .+-+|++||+|...+.+..
T Consensus 323 eQL~WLeqeLa~---a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~ 399 (496)
T TIGR03767 323 TQFKWIKDTLRA---SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRR 399 (496)
T ss_pred HHHHHHHHHHhc---CCCCCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccC
Confidence 456777654321 2345689999997543211 000 0 0 1 22222 5788999999987754322
Q ss_pred ----cCCCCceEEcCCCCcccccccCccCCcEEEEEEEeC---CceEEEEEECCCCCcEE
Q 006814 264 ----VPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKE---NQYRPTKIPLTSVRPFE 316 (630)
Q Consensus 264 ----~~~~~~~I~yPGS~~~ts~~egE~~~Kgv~lleI~~---~~~~~e~IpL~tvRpf~ 316 (630)
.++.+++-+..+|.+ ..|.-+-++||.. +.+.+.-.-+++.-|..
T Consensus 400 ~~~~~p~~gfweI~TaSlv--------dfPq~~Ri~Ei~~n~dgt~si~tt~vd~~~~~~ 451 (496)
T TIGR03767 400 VEGVGKDKGFWEINTASHI--------DFPQQGRIIELADNQDGTVSIFTTLIESAAPYA 451 (496)
T ss_pred CCCCCCcCCeEEEeccccc--------cCCCCceEEEEEeCCCCcEEEEEEecccCCCcc
Confidence 123467777877763 3477788888854 34566666666555553
No 94
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.32 E-value=0.00035 Score=70.71 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCC
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPS 68 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps 68 (630)
||+++||+|-. +.+|+++++.+. ..++|.|++.||+.+...-+
T Consensus 16 ri~visDiHg~------------~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~ 59 (218)
T PRK09968 16 HIWVVGDIHGE------------YQLLQSRLHQLSFCPETDLLISVGDNIDRGPES 59 (218)
T ss_pred eEEEEEeccCC------------HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCH
Confidence 89999999975 567888888765 46899999999999976433
No 95
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.30 E-value=0.00041 Score=71.38 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh---------cCCCEEEEcCCCCCCCCCChHHHHHHHH
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ---------KEVDFVLLGGDLFHENKPSRSTLVKAIE 77 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~---------~~VD~VLlaGDLFd~~~Ps~~tl~~~~~ 77 (630)
||+.+++|+|-- +..|+++++.+.- ..-|.+++.|||.|...-|..++..+++
T Consensus 1 ~~~~vIGDIHG~------------~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~ 62 (245)
T PRK13625 1 MKYDIIGDIHGC------------YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWE 62 (245)
T ss_pred CceEEEEECccC------------HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHH
Confidence 789999999964 5678888876532 1347999999999987556655444433
No 96
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.0041 Score=68.77 Aligned_cols=79 Identities=16% Similarity=-0.008 Sum_probs=49.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCC-CCCChHHHHHHHHHHHhhccCC
Q 006814 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE-NKPSRSTLVKAIEILRRHCLND 86 (630)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~-~~Ps~~tl~~~~~~Lr~l~~g~ 86 (630)
.+.-..++.++.|+=..+.... +..... ...++|+|||.|||-.. ..++ ..-...+++++.+
T Consensus 143 ~~~~~~~~~i~GDlG~~~~~~s----------~~~~~~--~~~k~d~vlhiGDlsYa~~~~n-~~wD~f~r~vEp~---- 205 (452)
T KOG1378|consen 143 GQDSPTRAAIFGDMGCTEPYTS----------TLRNQE--ENLKPDAVLHIGDLSYAMGYSN-WQWDEFGRQVEPI---- 205 (452)
T ss_pred CccCceeEEEEccccccccccc----------hHhHHh--cccCCcEEEEecchhhcCCCCc-cchHHHHhhhhhh----
Confidence 3557899999999766654321 122221 11279999999999543 3332 2223344444432
Q ss_pred CccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006814 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (630)
Q Consensus 87 ~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~ 132 (630)
...+|..++.|||+...
T Consensus 206 -----------------------------As~vPymv~~GNHE~d~ 222 (452)
T KOG1378|consen 206 -----------------------------ASYVPYMVCSGNHEIDW 222 (452)
T ss_pred -----------------------------hccCceEEecccccccC
Confidence 35689999999999754
No 97
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=97.15 E-value=0.0026 Score=62.21 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=27.3
Q ss_pred CceEEEEEccCCCC-CCCccccccccCCCCCcEEEeCccccc
Q 006814 217 DWFNILVLHQNRVK-TNPKNAINEHFLPRFLDFVVWGHEHEC 257 (630)
Q Consensus 217 ~~fnIlvlHq~~~~-~~~~~~i~e~~l~~~~DyVa~GH~H~~ 257 (630)
..--|+|.|.+... .++..++.+-+-...++.++.||+|+.
T Consensus 158 ~~~fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv 199 (230)
T COG1768 158 VSKFIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGV 199 (230)
T ss_pred cCeEEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCC
Confidence 33458999987543 233344543333456999999999995
No 98
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.05 E-value=0.0012 Score=69.37 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHh
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~ 81 (630)
|++.+++|+|-. +.+|+.+++.+. ..+.|-+++.|||++...-|.+ +++++++
T Consensus 1 m~~YvIGDIHGc------------~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~sle----vL~~l~~ 54 (279)
T TIGR00668 1 MATYLIGDLHGC------------YDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE----VLRYVKS 54 (279)
T ss_pred CcEEEEEcccCC------------HHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHH----HHHHHHh
Confidence 678999999987 567899998886 3468999999999998754544 4455554
No 99
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.88 E-value=0.0018 Score=65.74 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=36.7
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--------CCCEEEEcCCCCCCCCCChHHHHHHHHHHHh
Q 006814 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--------EVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (630)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--------~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~ 81 (630)
.+++|+|-. +.+|+++++.+... ..|.|++.||+.|..--|.. ++++|.+
T Consensus 2 ~vIGDIHG~------------~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~----vl~~l~~ 59 (222)
T cd07413 2 DFIGDIHGH------------AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRE----LLEIVKS 59 (222)
T ss_pred EEEEeccCC------------HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHH----HHHHHHH
Confidence 578999986 56788888776432 46899999999998755655 4455544
No 100
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.88 E-value=0.021 Score=59.41 Aligned_cols=190 Identities=21% Similarity=0.205 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcccee
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
|||++.|+= |.. -..++...+...+ ++++|+++..||.+-...+... ...+.|..
T Consensus 1 ~ilfigdi~-g~~---------G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~---~~~~~L~~----------- 56 (255)
T cd07382 1 KILFIGDIV-GKP---------GRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITP---KIAKELLS----------- 56 (255)
T ss_pred CEEEEEeCC-CHH---------HHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCH---HHHHHHHh-----------
Confidence 577777763 322 2345555555554 5689999999999876543322 34445543
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCc----eeEccceeecCCCccceeEE
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKMVLGGSGVGEITVY 168 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~gl----Vn~fg~~~l~~~~~~~i~~~ 168 (630)
.++-++.+ |||....+ + .+.+|..... .||.... ...
T Consensus 57 ------------------------~G~D~iTl-GNH~fD~g-e---l~~~l~~~~~~l~~aN~~~~~----------pg~ 97 (255)
T cd07382 57 ------------------------AGVDVITM-GNHTWDKK-E---ILDFIDEEPRLLRPANYPPGT----------PGR 97 (255)
T ss_pred ------------------------cCCCEEEe-cccccCcc-h---HHHHHhcCcCceEeeecCCCC----------CCC
Confidence 46677777 99988766 2 1233333211 1221100 011
Q ss_pred E-EEEeeCCeeEEEEecCCCChHHHHhhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCCCC
Q 006814 169 P-ILIRKGSTAVALYGLGNIRDERLNRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246 (630)
Q Consensus 169 P-i~l~kg~~~valyGl~~i~derl~~~f~~~-~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~i~e~~l~~~~ 246 (630)
| ..+..++.+|++.|+--.. -+. .+.++ ..++.+.+... ..-.+-|++.|..... .+..+ ...++..+
T Consensus 98 ~~~i~~~~G~kIaVigl~g~~--~~~-~~~~P~~~~~~~v~~lk----~~~D~IIV~~H~g~ts--Ek~al-a~~ldg~V 167 (255)
T cd07382 98 GYGVVEVNGKKIAVINLMGRV--FMP-PLDNPFRAADELLEELK----EEADIIFVDFHAEATS--EKIAL-GWYLDGRV 167 (255)
T ss_pred CeEEEEECCEEEEEEEEeccc--CCC-cCCCHHHHHHHHHHHHh----cCCCEEEEEECCCCCH--HHHHH-HHhCCCCc
Confidence 2 2345668899988873110 000 11111 11222212111 1245889999986421 01011 24556679
Q ss_pred cEEEeCcccccccCCeecCCCCceEEcCCC
Q 006814 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (630)
Q Consensus 247 DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS 276 (630)
|.|+-||.|....+.+.+++...++...|-
T Consensus 168 dvIvGtHTHv~t~d~~il~~gTa~itd~Gm 197 (255)
T cd07382 168 SAVVGTHTHVQTADERILPGGTAYITDVGM 197 (255)
T ss_pred eEEEeCCCCccCCccEEeeCCeEEEecCcc
Confidence 999999999987765555443335555553
No 101
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.76 E-value=0.0045 Score=65.46 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh------cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHh
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~------~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~ 81 (630)
+++.++|+|-. +..|+++++.+.+ ...+.|++.||+.|..--+.. ++++|..
T Consensus 3 ~iyaIGDIHG~------------~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~e----Vld~L~~ 60 (304)
T cd07421 3 VVICVGDIHGY------------ISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRK----VIDFLIS 60 (304)
T ss_pred eEEEEEeccCC------------HHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHH----HHHHHHH
Confidence 68999999986 4567777665432 246789999999998744444 4555544
No 102
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.0037 Score=59.30 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=53.8
Q ss_pred CceEEEEEccCCC-CCCCccccccccCC--CCCcEEEeCcccccccCCeecCCCCceEEcCCCCc-ccccccCccCCcEE
Q 006814 217 DWFNILVLHQNRV-KTNPKNAINEHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV-ATSLIEGESKPKHV 292 (630)
Q Consensus 217 ~~fnIlvlHq~~~-~~~~~~~i~e~~l~--~~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~-~ts~~egE~~~Kgv 292 (630)
+.|+|.++|+... +.+. +....+|. -.+|..+|||+|++.. .+. .|..+++|||.. +.+.++-+.....|
T Consensus 78 GqfkIG~chGhqViP~gd--~~sL~~LaRqldvDILl~G~Th~f~A--ye~--eg~ffvnPGSaTGAfn~~~t~~~~PSF 151 (183)
T KOG3325|consen 78 GQFKIGLCHGHQVIPWGD--PESLALLARQLDVDILLTGHTHKFEA--YEH--EGKFFVNPGSATGAFNVSDTDIIVPSF 151 (183)
T ss_pred ccEEEEeecCcEeecCCC--HHHHHHHHHhcCCcEEEeCCceeEEE--EEe--CCcEEeCCCcccCCCcccccCCCCCce
Confidence 5689999998532 2111 11122332 3699999999999853 233 356889999976 35555544456789
Q ss_pred EEEEEeCCceE
Q 006814 293 LLLEIKENQYR 303 (630)
Q Consensus 293 ~lleI~~~~~~ 303 (630)
+|++|.+..+.
T Consensus 152 vLmDiqg~~~v 162 (183)
T KOG3325|consen 152 VLMDIQGSTVV 162 (183)
T ss_pred EEEEecCCEEE
Confidence 99999987543
No 103
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.44 E-value=0.0072 Score=63.32 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHH
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAI 76 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~ 76 (630)
.++.+++|+|-. +.++..+++.+.....+.+|+.||++|...++.+++...+
T Consensus 28 ~~i~vvGDiHG~------------~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~ 79 (271)
T smart00156 28 APVTVCGDIHGQ------------FDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLF 79 (271)
T ss_pred CCEEEEEeCcCC------------HHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHH
Confidence 579999999986 4567777776666678999999999999888877655443
No 104
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=96.24 E-value=0.083 Score=55.34 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccce
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~ 91 (630)
||||++.|+= |.. -..++.+.+...+ ++++|+++..||.+....... ...++.|.
T Consensus 1 m~ilfiGDi~-G~~---------Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~---~~~~~~L~----------- 56 (266)
T TIGR00282 1 IKFLFIGDVY-GKA---------GRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLT---LKIYEFLK----------- 56 (266)
T ss_pred CeEEEEEecC-CHH---------HHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC---HHHHHHHH-----------
Confidence 8999999986 321 2456777777666 457999999999997653222 23444554
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhC-Cc---eeEccceeecCCCccceeE
Q 006814 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSAC-NL---VNYFGKMVLGGSGVGEITV 167 (630)
Q Consensus 92 ~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~-gl---Vn~fg~~~l~~~~~~~i~~ 167 (630)
+.++-|+.+ |||..-.+. .++.+... .+ .||-... .+. .
T Consensus 57 ------------------------~~GvDviT~-GNH~~Dkge----~~~~i~~~~~~lrpanyp~~~--pG~---g--- 99 (266)
T TIGR00282 57 ------------------------QSGVNYITM-GNHTWFQKL----ILDVVINQKDLVRPLNFDTSF--AGK---G--- 99 (266)
T ss_pred ------------------------hcCCCEEEc-cchhccCcH----HHHHHhccccccccCCCCCCC--CCC---C---
Confidence 357888888 899887652 11222211 11 1221100 010 1
Q ss_pred EEEEEeeCCeeEEEEecC---CCChHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCC
Q 006814 168 YPILIRKGSTAVALYGLG---NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244 (630)
Q Consensus 168 ~Pi~l~kg~~~valyGl~---~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~~~~~~i~e~~l~~ 244 (630)
...+..++.++++.++- +...-.+...|. .++.+.+... ..-.+-|+.+|..... ....-..+++.
T Consensus 100 -~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~---~~d~~i~~lk----~~~d~IIVd~Haeats---EK~a~~~~ldg 168 (266)
T TIGR00282 100 -SLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFK---VLKELINMLK----KDCDLIFVDFHAETTS---EKNAFGMAFDG 168 (266)
T ss_pred -cEEEEECCEEEEEEECCCcccCCccccCCHHH---HHHHHHHhhh----cCCCEEEEEeCCCCHH---HHHHHHHHhCC
Confidence 12235566777776652 221100111111 1222222211 1235889999986421 11112356788
Q ss_pred CCcEEEeCcccccccCCeecCCCCceEE
Q 006814 245 FLDFVVWGHEHECLIDPQEVPGMGFHLT 272 (630)
Q Consensus 245 ~~DyVa~GH~H~~~i~p~~~~~~~~~I~ 272 (630)
++|.|+--|.|-..-+.+-+++..-++.
T Consensus 169 ~vsaVvGtHtHV~TaD~~il~~gtayit 196 (266)
T TIGR00282 169 YVTAVVGTHTHVPTADLRILPKGTAYIT 196 (266)
T ss_pred CccEEEeCCCCCCCCcceeCCCCCEEEe
Confidence 9999999999997766555554333444
No 105
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.21 E-value=0.1 Score=53.77 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=108.3
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEE--cCCCCCCCC-----CChHHHHHHHHHHHhhccCC
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL--GGDLFHENK-----PSRSTLVKAIEILRRHCLND 86 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLl--aGDLFd~~~-----Ps~~tl~~~~~~Lr~l~~g~ 86 (630)
||+.+.|+=++..........+....|+.+..+..+ .|+++. =+=+.+... +...+-...++.|+
T Consensus 1 ti~~~GDi~~~~~~~~~~~~~~~~~~~~~v~~~l~~--aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~------ 72 (250)
T PF09587_consen 1 TIAFVGDIMLGRGVYQRAEKGGFDYIFEDVKPLLQS--ADLVVANLETPVTDSGQPASGYPHFNAPPEILDALK------ 72 (250)
T ss_pred CEEEEeccccCcchhhhcccCChHHHHHHHHHHHhh--CCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHH------
Confidence 578889998886543322222455567777776654 365542 111222222 11111112333343
Q ss_pred CccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCc-chHHHhhhhCCceeEccceeecCCCccce
Q 006814 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDN-LSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (630)
Q Consensus 87 ~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~-ls~ldiL~~~glVn~fg~~~l~~~~~~~i 165 (630)
..++-++.+.-||-.-.+... ...++.|...|+ .++|.-. + ..-
T Consensus 73 -----------------------------~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi-~~~Gag~----~-~~~ 117 (250)
T PF09587_consen 73 -----------------------------DAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGI-PYVGAGR----N-LEE 117 (250)
T ss_pred -----------------------------HcCCCEEEecCCCCccccHHHHHHHHHHHHHCCC-cEeECcC----C-hHH
Confidence 357889999999976655433 356778888874 5566311 1 111
Q ss_pred eEEEEEEeeCCeeEEEEecCCCChHHHH-hh-----hc----------ChhHHhhcChhhhhhhcCCCceEEEEEccCCC
Q 006814 166 TVYPILIRKGSTAVALYGLGNIRDERLN-RM-----FQ----------TPHAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (630)
Q Consensus 166 ~~~Pi~l~kg~~~valyGl~~i~derl~-~~-----f~----------~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~ 229 (630)
...|..+..++.+|++.|..+....... .. +. ....++.+..... .......+-|+.+|....
T Consensus 118 a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-~~r~~~D~vIv~~HwG~e 196 (250)
T PF09587_consen 118 ARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIR-EARKKADVVIVSLHWGIE 196 (250)
T ss_pred hcCeEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHH-HHhcCCCEEEEEeccCCC
Confidence 2357888889999999987654311000 00 00 0000111111111 111246789999999754
Q ss_pred CC-CCcc---ccccccCCCCCcEEEeCccccccc
Q 006814 230 KT-NPKN---AINEHFLPRFLDFVVWGHEHECLI 259 (630)
Q Consensus 230 ~~-~~~~---~i~e~~l~~~~DyVa~GH~H~~~i 259 (630)
.. .|.. .+-..++..++|+|+-+|-|.-+.
T Consensus 197 ~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~ 230 (250)
T PF09587_consen 197 YENYPTPEQRELARALIDAGADIIIGHHPHVIQP 230 (250)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccc
Confidence 31 1211 112345678999999999999764
No 106
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=96.21 E-value=0.017 Score=65.51 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=59.4
Q ss_pred CccEEEEEcCCCCCCC--C----------------------------Cchh-chhcHHHHHHHHHHHHHhcC--CCEEEE
Q 006814 11 NTVRILVATDCHLGYM--E----------------------------KDEI-RRHDSFEAFEEICSIAEQKE--VDFVLL 57 (630)
Q Consensus 11 ~~mKILh~SD~HLG~~--~----------------------------~d~~-r~~Ds~~tFeeil~~A~~~~--VD~VLl 57 (630)
-++||||+||+|.... + ++.. -.+-.+.+++.+|+.+++.. +|+|+.
T Consensus 137 p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~w 216 (577)
T KOG3770|consen 137 PTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYIIW 216 (577)
T ss_pred CceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4699999999999731 1 0111 12334788999999887653 799999
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006814 58 GGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (630)
Q Consensus 58 aGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p 131 (630)
+||+-.+. ....+.....+.+.++. ..+..-| .++|||..-||||..
T Consensus 217 TGD~~~H~-~w~~t~~~~l~~~~~l~---------------~~~~e~F-----------pdvpvypalGNhe~~ 263 (577)
T KOG3770|consen 217 TGDNVAHD-VWAQTEEENLSMLSRLT---------------SLLSEYF-----------PDVPVYPALGNHEIH 263 (577)
T ss_pred eCCCCccc-chhhhHHHHHHHHHHHH---------------HHHHHhC-----------CCCceeeecccCCCC
Confidence 99997654 22333333333333331 0011112 378999999999963
No 107
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.98 E-value=0.073 Score=54.27 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCCCCcc-hHHHhhhhCCceeEccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCChHHHHh-
Q 006814 117 VGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLNR- 194 (630)
Q Consensus 117 ~~iPVf~I~GNHD~p~~~~~l-s~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi~l~kg~~~valyGl~~i~derl~~- 194 (630)
.++-++.+.+||+.-.+...+ ..++.|...|+ .++|.-. .... ...|..+..++.+|++.|+..........
T Consensus 76 ~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i-~~~g~~~----~~~~-~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~ 149 (239)
T cd07381 76 AGFDVVSLANNHTLDYGEEGLLDTLDALDEAGI-AHAGAGR----NLEE-ARRPAILEVNGIKVAFLAYTYGTNGIPLAA 149 (239)
T ss_pred hCCCEEEcccccccccchHHHHHHHHHHHHcCC-ceeECCC----CHHH-hcCcEEEEECCEEEEEEEEECCCCCCcCcc
Confidence 477888999999987775543 34455666554 3344311 0000 12456677788999999985532110000
Q ss_pred ------hhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCC-CCcc---ccccccCCCCCcEEEeCcccccc
Q 006814 195 ------MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPKN---AINEHFLPRFLDFVVWGHEHECL 258 (630)
Q Consensus 195 ------~f~~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~-~~~~---~i~e~~l~~~~DyVa~GH~H~~~ 258 (630)
.+.. .++.+..... .......+-|+++|...... .|.. .+...++..++|+|+-||-|..+
T Consensus 150 ~~~~~~~~~~--~~~~~~~~i~-~lr~~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q 220 (239)
T cd07381 150 GARPGGVNPL--DLERIAADIA-EAKKKADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQ 220 (239)
T ss_pred cCCccccCcc--CHHHHHHHHH-HHhhcCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCC
Confidence 0000 0011111100 01112568999999875432 1111 11123445689999999999865
No 108
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=95.96 E-value=0.019 Score=61.23 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=40.2
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHH
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKA 75 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~ 75 (630)
-++.+++|+|-. +..+..+++.+.....|.+|+.||++|...++.+++...
T Consensus 43 ~~i~ViGDIHG~------------~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL 93 (305)
T cd07416 43 APVTVCGDIHGQ------------FYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYL 93 (305)
T ss_pred CCEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEECCccCCCCChHHHHHHH
Confidence 368999999986 456777777766666799999999999988888755443
No 109
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=95.83 E-value=0.0071 Score=60.23 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCC
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPS 68 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps 68 (630)
|+++||.|++.... .++.|++++..+. +.+++.++++|++.+...+.
T Consensus 1 Iv~~Sg~~~~~~~~-------~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~ 48 (209)
T PF04042_consen 1 IVFASGPFLDSDNL-------SLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPY 48 (209)
T ss_dssp EEEEES--CTTT-H-------HHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHH
T ss_pred CEEEecCccCCCHh-------HHHHHHHHHHhccccCCCcEEEEeCCCcCccccc
Confidence 78999999994321 3777888888777 88999999999999975543
No 110
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.51 E-value=0.024 Score=59.87 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHH
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~ 74 (630)
++.+++|+|-. +..+.+++..+.....+.+|+.||++|...++.+++..
T Consensus 43 ~i~vvGDIHG~------------~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~l 91 (285)
T cd07415 43 PVTVCGDIHGQ------------FYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLL 91 (285)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHHHHHH
Confidence 58999999986 45567777666555667899999999998888765543
No 111
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.32 E-value=0.2 Score=51.22 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCCCCcc-hHHHhhhhCCceeEccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCChHHH---
Q 006814 117 VGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERL--- 192 (630)
Q Consensus 117 ~~iPVf~I~GNHD~p~~~~~l-s~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi~l~kg~~~valyGl~~i~derl--- 192 (630)
.++-++.+.+||+.-.|...+ ..++.|...|+ .++|... .... ...|+.+..++.+|++.|+.+......
T Consensus 72 ~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i-~~~g~~~----~~~~-~~~~~i~~~~g~kIg~ig~t~~~~~~~~~~ 145 (239)
T smart00854 72 AGFDVVSLANNHSLDYGEEGLLDTLAALDAAGI-AHVGAGR----NLAE-ARKPAIVEVKGIKIALLAYTYGTNNGWAAS 145 (239)
T ss_pred hCCCEEEeccCcccccchHHHHHHHHHHHHCCC-CEeeCCC----ChHH-hhCcEEEEECCEEEEEEEEEcCCCCCcccC
Confidence 467888999999988876544 34555665554 3444321 0111 123566778889999999754321000
Q ss_pred ------Hhhhc-ChhHHhhcChhhhhhhcCCCceEEEEEccCCCCC-CCcc---ccccccCCCCCcEEEeCcccccc
Q 006814 193 ------NRMFQ-TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPKN---AINEHFLPRFLDFVVWGHEHECL 258 (630)
Q Consensus 193 ------~~~f~-~~~~v~~l~p~~~~~~~~~~~fnIlvlHq~~~~~-~~~~---~i~e~~l~~~~DyVa~GH~H~~~ 258 (630)
..... +...+.....+ ......+-|+++|...... .|.. .+...++..++|+|+-||-|..+
T Consensus 146 ~~~~g~~~~~~~~~~~i~~~i~~----lr~~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~ 218 (239)
T smart00854 146 KDRPGVALLPDLDREKILADIAR----ARKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQ 218 (239)
T ss_pred CCCCCeeecCcCCHHHHHHHHHH----HhccCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCC
Confidence 00000 00011110111 1113568999999976532 1111 12223445789999999999865
No 112
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.30 E-value=0.038 Score=58.65 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHH
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~ 74 (630)
++.+++|+|-. +..+.++++.......+-+|+.||++|...++.+++..
T Consensus 51 ~i~viGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~l 99 (293)
T cd07414 51 PLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICL 99 (293)
T ss_pred ceEEEEecCCC------------HHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHHH
Confidence 58999999986 45667777766555678899999999998888775543
No 113
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.29 E-value=0.032 Score=59.85 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHH
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~ 73 (630)
++.+++|+|-. +..+.+++..+.....+-+|+.||++|...++.+++.
T Consensus 60 ~i~vvGDIHG~------------~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl~ 107 (320)
T PTZ00480 60 PLKICGDVHGQ------------YFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETIC 107 (320)
T ss_pred CeEEEeecccC------------HHHHHHHHHhcCCCCcceEEEeceecCCCCCcHHHHH
Confidence 58899999976 4556677776655567788999999999888876543
No 114
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=94.61 E-value=0.067 Score=57.08 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHH
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~ 74 (630)
.+.+++|+|-. +..+..+++.+.....+.+|+.||++|...++.+++..
T Consensus 44 ~i~vvGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~l 92 (303)
T PTZ00239 44 PVNVCGDIHGQ------------FYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEY 92 (303)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHHHHHH
Confidence 48899999986 45566676655555677899999999998888765443
No 115
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=94.43 E-value=0.068 Score=56.77 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=35.9
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHH
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~ 73 (630)
+.+++|+|-. +..+.++++.+.-...+-+|+.||++|...++.+++.
T Consensus 54 ~~ViGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ 100 (294)
T PTZ00244 54 VRVCGDTHGQ------------YYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETIT 100 (294)
T ss_pred ceeeccCCCC------------HHHHHHHHHHcCCCCcccEEEeeeEecCCCCHHHHHH
Confidence 7789999986 4566777776655556678899999999888877543
No 116
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=94.31 E-value=0.097 Score=57.39 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChHHHHH
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTLVK 74 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~tl~~ 74 (630)
+|++++|+|-- +.+|..+++.+.-... +.+|+.||+.|....+.+++..
T Consensus 67 ~i~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~l 116 (377)
T cd07418 67 EVVVVGDVHGQ------------LHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLL 116 (377)
T ss_pred CEEEEEecCCC------------HHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHH
Confidence 58999999986 4566677765543223 4588999999998888765543
No 117
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=94.22 E-value=0.21 Score=55.93 Aligned_cols=112 Identities=17% Similarity=0.304 Sum_probs=64.3
Q ss_pred CCCccEEEEEcCCCCCCCCCc------------------hhchhcHH--HHHHHHHHHH----HhcCCCEEEEcCCCCCC
Q 006814 9 IANTVRILVATDCHLGYMEKD------------------EIRRHDSF--EAFEEICSIA----EQKEVDFVLLGGDLFHE 64 (630)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d------------------~~r~~Ds~--~tFeeil~~A----~~~~VD~VLlaGDLFd~ 64 (630)
...-.+|+++||+|+-=.+.- ..|-...+ ..++.+++.+ .....||+|-.||..|.
T Consensus 33 ~~~l~~f~~~tDvHi~D~esP~r~~~l~~~~~~~~~~~s~y~P~~~~t~~v~~AaVqtvNal~~~~p~df~is~GD~~nn 112 (492)
T TIGR03768 33 GKRLLRFFTISDVHITDKESPNQLIYLQQTEPAAAPNTSIYSPVMLYSTQVLDAAVQTVNDLHKRDRFDFGISLGDACNS 112 (492)
T ss_pred cchheeeeeeeeeeeccccCchhhhhhcccccccCCCccccChhHHHHHHHHHHHHHHHHHhhcCCCceEEEeccccccc
Confidence 344578999999999633210 01222222 2355555544 45679999999999987
Q ss_pred CCCChHHHHHHHHHHHhhccCCCccceeee-ch--hhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006814 65 NKPSRSTLVKAIEILRRHCLNDRPVQFQVV-SD--QAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (630)
Q Consensus 65 ~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~l-sd--~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~ 132 (630)
. ....|..++++|. +++|.---= -+ ..+-|+..| .-+-++..||+|.+.||||...
T Consensus 113 ~--~~nElrWyidvld-----G~~I~p~SG~~~~~e~v~~~~p~-----~a~GL~~~iPWY~v~GNHD~~~ 171 (492)
T TIGR03768 113 T--QYNELRWYIDVLD-----GKPITPSSGAHAGADTIDYQKPF-----QAAGLDKSIPWYQVLGNHDHFW 171 (492)
T ss_pred h--hHHHHHHHHHHhc-----CCeeccCCCCCCCccCCCCCCcc-----cccccCCCCceEEeecCCcccc
Confidence 5 3455666666654 234321100 00 012333322 2233567799999999999743
No 118
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=94.06 E-value=0.12 Score=55.53 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCChHHHHH
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVK 74 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~-~VD~VLlaGDLFd~~~Ps~~tl~~ 74 (630)
++.++.|+|-.+ ..|..+++.+.-- .-+.+|+.||+.|...-|.+++..
T Consensus 52 ~~~vvGDiHG~~------------~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~l 101 (321)
T cd07420 52 QVTICGDLHGKL------------DDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILII 101 (321)
T ss_pred CeEEEEeCCCCH------------HHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHH
Confidence 689999999873 4566666544322 236799999999998878775543
No 119
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=94.04 E-value=0.11 Score=55.89 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=38.0
Q ss_pred ccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCCChHHHHHHH
Q 006814 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAI 76 (630)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~-~~VD~VLlaGDLFd~~~Ps~~tl~~~~ 76 (630)
..++.++.|+|-. +..|.+++....- ..-|.+|+.||++|...++.+++...+
T Consensus 59 ~~~~~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~ 112 (316)
T cd07417 59 GEKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLF 112 (316)
T ss_pred CceeEEeecccCC------------HHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHH
Confidence 3579999999986 3556666655432 123679999999999988887665444
No 120
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=93.96 E-value=0.14 Score=49.07 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=34.2
Q ss_pred HhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCC
Q 006814 48 EQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGN 127 (630)
Q Consensus 48 ~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GN 127 (630)
+...+|++|+.||+|....-+ +-|..| .+++..+.+|+|.|-||
T Consensus 23 k~gpFd~~ic~Gdff~~~~~~--------~~~~~y----------------------------~~g~~~~pipTyf~ggn 66 (150)
T cd07380 23 KKGPFDALLCVGDFFGDDEDD--------EELEAY----------------------------KDGSKKVPIPTYFLGGN 66 (150)
T ss_pred ccCCeeEEEEecCccCCccch--------hhHHHH----------------------------hcCCccCCCCEEEECCC
Confidence 456899999999999875533 233333 23445789999999999
Q ss_pred CC
Q 006814 128 HD 129 (630)
Q Consensus 128 HD 129 (630)
|.
T Consensus 67 ~~ 68 (150)
T cd07380 67 NP 68 (150)
T ss_pred CC
Confidence 96
No 121
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=93.69 E-value=0.17 Score=54.15 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcC--------CCEEEEcCCCCCCCCCChHHHHHH
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKE--------VDFVLLGGDLFHENKPSRSTLVKA 75 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~--------VD~VLlaGDLFd~~~Ps~~tl~~~ 75 (630)
.+.+++|+|-. +..|.++++.+.-.. ..-+|+.||++|....+.+++...
T Consensus 49 ~~~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll 106 (311)
T cd07419 49 PIKIFGDIHGQ------------FGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLL 106 (311)
T ss_pred CEEEEEeccCC------------HHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHH
Confidence 47888999986 355666665542110 124778899999998887755433
No 122
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=93.26 E-value=0.17 Score=54.45 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=18.0
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCC
Q 006814 110 YEDPHFNVGLPVFSIHGNHDDPAG 133 (630)
Q Consensus 110 y~d~n~~~~iPVf~I~GNHD~p~~ 133 (630)
|......+.+|.+.|-|||.....
T Consensus 67 YYsge~~APVlTIFIGGNHEAsny 90 (456)
T KOG2863|consen 67 YYSGEIKAPVLTIFIGGNHEASNY 90 (456)
T ss_pred HhCCcccCceeEEEecCchHHHHH
Confidence 444445788999999999997543
No 123
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.26 E-value=0.084 Score=60.38 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=2.1
Q ss_pred ccccccccc
Q 006814 522 AASFEDIRS 530 (630)
Q Consensus 522 ~~~~~~~~~ 530 (630)
--||...+.
T Consensus 458 tlSWk~~~~ 466 (556)
T PF05918_consen 458 TLSWKEAKK 466 (556)
T ss_dssp --TTS----
T ss_pred ceeeeeccc
Confidence 567766444
No 124
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=88.23 E-value=0.23 Score=44.63 Aligned_cols=15 Identities=93% Similarity=1.730 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCCCC
Q 006814 584 TRGRGRGRGRGRGRG 598 (630)
Q Consensus 584 ~~~~~~~~~~~~~~~ 598 (630)
+||||||||||||||
T Consensus 95 ~rgrgrg~Grg~~~g 109 (109)
T KOG3428|consen 95 GRGRGRGRGRGRGRG 109 (109)
T ss_pred ccccccccccCCCCC
Confidence 555555555555543
No 125
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.95 E-value=0.69 Score=53.12 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhcC
Q 006814 39 AFEEICSIAEQKE 51 (630)
Q Consensus 39 tFeeil~~A~~~~ 51 (630)
+|+.+++++.+++
T Consensus 60 Ai~a~~DLcEDed 72 (556)
T PF05918_consen 60 AINAQLDLCEDED 72 (556)
T ss_dssp HHHHHHHHHT-SS
T ss_pred HHHHHHHHHhccc
Confidence 4444555554433
No 126
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=86.48 E-value=2.7 Score=48.28 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCCccEEEEEcCCCCCCC--CCchhchhc--HHHHH-HHHHHHHHhcCCCEEEE-cCCCCCCCC
Q 006814 9 IANTVRILVATDCHLGYM--EKDEIRRHD--SFEAF-EEICSIAEQKEVDFVLL-GGDLFHENK 66 (630)
Q Consensus 9 ~~~~mKILh~SD~HLG~~--~~d~~r~~D--s~~tF-eeil~~A~~~~VD~VLl-aGDLFd~~~ 66 (630)
....++|+|+||+|-+.. ..+..+..| -|++| ..+-++|...+||.+++ +||+.+.+-
T Consensus 39 ~~~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg 102 (602)
T KOG4419|consen 39 NWGQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTG 102 (602)
T ss_pred ccccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCce
Confidence 345689999999998764 222211111 13444 45566788999998776 899987654
No 127
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=76.84 E-value=40 Score=35.71 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=30.7
Q ss_pred CCCCCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 006814 5 PREDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67 (630)
Q Consensus 5 ~~~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~P 67 (630)
.++...+-.|++.++|+|-=... |- .--.=|+++++||...-..+
T Consensus 54 ~ap~~~~~~r~VcisdtH~~~~~---------------i~---~~p~gDvlihagdfT~~g~~ 98 (305)
T KOG3947|consen 54 DAPVGPGYARFVCISDTHELTFD---------------IN---DIPDGDVLIHAGDFTNLGLP 98 (305)
T ss_pred CCCCCCCceEEEEecCcccccCc---------------cc---cCCCCceEEeccCCccccCH
Confidence 34556778999999999964211 11 12356899999999875543
No 128
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=75.09 E-value=8.4 Score=40.95 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=33.6
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCC
Q 006814 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----QKEVDFVLLGGDLFHE 64 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-----~~~VD~VLlaGDLFd~ 64 (630)
....+|+++||+||+-.. .+++++.+++.-. .+-|-++++.|++...
T Consensus 25 ~~~~~~VilSDV~LD~p~--------tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~ 76 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSPY--------TFEVLDKMLSLYVNTYPENELPVGFIFMGDFISL 76 (291)
T ss_pred CCceEEEEEEeeccCCHH--------HHHHHHHHHHHhhccCcccCCCeEEEEecCccCC
Confidence 345789999999998532 3556666666553 2348899999999765
No 129
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.48 E-value=11 Score=42.23 Aligned_cols=94 Identities=16% Similarity=0.283 Sum_probs=59.3
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccce
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKE-VDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~-VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~ 91 (630)
.|||++.|.--. .-..|+.|-..-++.+ .|++++.|++|.+..-+.+ +.+|.
T Consensus 6 ~kILv~Gd~~Gr-----------~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e--------~~~yk-------- 58 (528)
T KOG2476|consen 6 AKILVCGDVEGR-----------FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAE--------VEKYK-------- 58 (528)
T ss_pred ceEEEEcCcccc-----------HHHHHHHHHHHhhcCCCceEEEEecccCCCccchhH--------HHHHh--------
Confidence 699999987543 2356777777777777 8999999999997433322 22232
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHhhhhCCceeEccce
Q 006814 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKM 155 (630)
Q Consensus 92 ~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~ 155 (630)
..+..+.||+|+.-+|--.+.. .+..++-...+.++.|+|+.
T Consensus 59 --------------------ng~~~vPiptY~~g~~~~~~~k--y~~n~~g~Ei~~Nlt~Lg~~ 100 (528)
T KOG2476|consen 59 --------------------NGTKKVPIPTYFLGDNANETEK--YFENSDGKEIAENLTYLGRK 100 (528)
T ss_pred --------------------cCCccCceeEEEecCCCCccce--ecccCCCcccccceeeeccc
Confidence 1234678899999888753321 12223444556667777663
No 130
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=68.11 E-value=5.9 Score=44.38 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=19.1
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q 006814 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~ 65 (630)
...+||++.|+.+..... +.++..+. .++++||+|+.||..-..
T Consensus 103 ~~~~r~a~~SC~~~~~~~---------~~~~~~~a---~~~~~D~~l~lGD~IY~d 146 (453)
T PF09423_consen 103 PDPFRFAFGSCQNYEDGY---------FPAYRRIA---ERDDPDFVLHLGDQIYED 146 (453)
T ss_dssp ---EEEEEE----CCC------------HHHHHHT---T-S--SEEEE-S-SS---
T ss_pred CCceEEEEECCCCcccCh---------HHHHHhhh---ccCCCcEEEEeCCeeecc
Confidence 346999999999864211 34455443 336899999999996443
No 131
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=62.91 E-value=27 Score=35.31 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCC
Q 006814 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNV 117 (630)
Q Consensus 38 ~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~ 117 (630)
..+++++..+.+..+|+|+++|=. .-....+..+++.+++. .
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~----gvt~~~~~~~v~~ik~~----------------------------------~ 52 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSL----GIVESNLDQTVKKIKKI----------------------------------T 52 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcC----CCCHHHHHHHHHHHHhh----------------------------------c
Confidence 456667777788899999999973 12345566677777763 3
Q ss_pred CCcEEEEcCCCCCCC
Q 006814 118 GLPVFSIHGNHDDPA 132 (630)
Q Consensus 118 ~iPVf~I~GNHD~p~ 132 (630)
.+||++-+||++.-+
T Consensus 53 ~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 53 NLPVILFPGNVNGLS 67 (205)
T ss_pred CCCEEEECCCccccC
Confidence 799999999999654
No 132
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=60.67 E-value=8.2 Score=44.88 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhh
Q 006814 42 EICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (630)
Q Consensus 42 eil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l 82 (630)
.+..++++.-||-+=+.||+||.. |.+. ..|+.|..+
T Consensus 175 al~~lIqrL~VDhLHIvGDIyDRG-p~pd---~ImD~Lm~~ 211 (640)
T PF06874_consen 175 ALSELIQRLAVDHLHIVGDIYDRG-PRPD---KIMDRLMNY 211 (640)
T ss_pred HHHHHHHHHhhhheeecccccCCC-CChh---HHHHHHhcC
Confidence 444556777899999999999985 3433 567777654
No 133
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=54.56 E-value=6.6 Score=35.55 Aligned_cols=11 Identities=91% Similarity=1.676 Sum_probs=5.6
Q ss_pred CCCCCCCCCCC
Q 006814 584 TRGRGRGRGRG 594 (630)
Q Consensus 584 ~~~~~~~~~~~ 594 (630)
|||+|||||||
T Consensus 99 grg~Grg~~~g 109 (109)
T KOG3428|consen 99 GRGRGRGRGRG 109 (109)
T ss_pred ccccccCCCCC
Confidence 44455555554
No 134
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=51.07 E-value=85 Score=34.25 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=16.2
Q ss_pred HHHhhcccccccCCCcHHHHHHHHHhhc
Q 006814 432 LVAENNLKMEIIPVNDLDVALHNFVNKD 459 (630)
Q Consensus 432 ~v~~~~~~l~~l~~~~l~~a~~~fv~k~ 459 (630)
+-+|+++...+|. ..|.--|+.|.=.|
T Consensus 210 ~~~ey~~Rr~ll~-sRL~vTVqSF~Wsd 236 (465)
T KOG3973|consen 210 FSREYYNRRLLLN-SRLKVTVQSFLWSD 236 (465)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhcccH
Confidence 3456655544443 46777888887544
No 135
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=48.74 E-value=50 Score=33.92 Aligned_cols=54 Identities=30% Similarity=0.409 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCC
Q 006814 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (630)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~i 119 (630)
..++++.+.+...|+|+++|=.- .+.+.+..++..++++ .+
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~----vt~~~~~~~v~~ik~~-----------------------------------~l 56 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQG----VTYEKTDTLIEALRRY-----------------------------------GL 56 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCc----ccHHHHHHHHHHHhcc-----------------------------------CC
Confidence 35677778888999999999662 1233455566777654 48
Q ss_pred cEEEEcCCCCCCC
Q 006814 120 PVFSIHGNHDDPA 132 (630)
Q Consensus 120 PVf~I~GNHD~p~ 132 (630)
||+.-|||++.-+
T Consensus 57 Pvilfp~~~~~i~ 69 (223)
T TIGR01768 57 PIILFPSNPTNVS 69 (223)
T ss_pred CEEEeCCCccccC
Confidence 9999999999654
No 136
>PRK09982 universal stress protein UspD; Provisional
Probab=47.74 E-value=40 Score=31.15 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q 006814 40 FEEICSIAEQKEVDFVLLG 58 (630)
Q Consensus 40 Feeil~~A~~~~VD~VLla 58 (630)
-++|++.|.++++|+|+++
T Consensus 92 ~~~I~~~A~~~~aDLIVmG 110 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCG 110 (142)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3788999999999998885
No 137
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=47.12 E-value=27 Score=37.92 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChHH
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRST 71 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~t 71 (630)
-|.++.|+|--|. -+-.+++.+....+ .-.|+.||+.|...-+.++
T Consensus 60 PV~i~GDiHGq~~------------DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~ 106 (331)
T KOG0374|consen 60 PVKIVGDIHGQFG------------DLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLET 106 (331)
T ss_pred CEEEEccCcCCHH------------HHHHHHHhcCCCCCcccEEEecccccCCccceEE
Confidence 4788999998643 12333333331112 3456779999998877664
No 138
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=46.97 E-value=59 Score=33.66 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCC
Q 006814 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (630)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~i 119 (630)
-.++++.+.+-..|+|+++|=.= .+.+.+..+++.++. +.++
T Consensus 30 ~~ei~~~~~~~GTDaImIGGS~g----vt~~~~~~~v~~ik~----------------------------------~~~l 71 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGGSDG----VTEENVDNVVEAIKE----------------------------------RTDL 71 (240)
T ss_pred cHHHHHHHHHcCCCEEEECCccc----ccHHHHHHHHHHHHh----------------------------------hcCC
Confidence 46788888899999999999652 233445667777763 3479
Q ss_pred cEEEEcCCCCCCC
Q 006814 120 PVFSIHGNHDDPA 132 (630)
Q Consensus 120 PVf~I~GNHD~p~ 132 (630)
||+.-||||..-+
T Consensus 72 PvilfP~~~~~is 84 (240)
T COG1646 72 PVILFPGSPSGIS 84 (240)
T ss_pred CEEEecCChhccC
Confidence 9999999999654
No 139
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=46.68 E-value=39 Score=35.32 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHH
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~ 73 (630)
+.++.|+|-- |.-+-+++++.-.-.-.--|+.||+.|...-|.+|..
T Consensus 45 vtvcGDIHGQ------------f~Dllelf~igG~~~~t~YLFLGDyVDRG~~SvEt~l 91 (303)
T KOG0372|consen 45 VTVCGDIHGQ------------FYDLLELFRIGGDVPETNYLFLGDYVDRGYYSVETFL 91 (303)
T ss_pred cEEeecccch------------HHHHHHHHHhCCCCCCCceEeecchhccccchHHHHH
Confidence 5678899964 2223334433322222335677999999888877643
No 140
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=46.53 E-value=42 Score=34.50 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=31.8
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHh
Q 006814 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (630)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~ 81 (630)
+-++.|+|-- |.-+.++....-.------++-||+.|...-|.+|....+-+..+
T Consensus 48 VTvCGDIHGQ------------FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~Lkar 102 (306)
T KOG0373|consen 48 VTVCGDIHGQ------------FYDLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKAR 102 (306)
T ss_pred eeEeeccchh------------HHHHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhc
Confidence 4578888864 222334443333221122456699999998888876555544433
No 141
>PTZ00070 40S ribosomal protein S2; Provisional
Probab=46.39 E-value=13 Score=38.64 Aligned_cols=8 Identities=100% Similarity=1.880 Sum_probs=2.9
Q ss_pred CCCCCCCC
Q 006814 590 GRGRGRGR 597 (630)
Q Consensus 590 ~~~~~~~~ 597 (630)
||||||||
T Consensus 21 g~~~~~~~ 28 (257)
T PTZ00070 21 GRGRGRGR 28 (257)
T ss_pred CCCCCCCC
Confidence 33333333
No 142
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=45.95 E-value=43 Score=34.53 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCc
Q 006814 41 EEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLP 120 (630)
Q Consensus 41 eeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iP 120 (630)
+++++.+.+...|+|+++|=+ + ..++..++.++++. ..+|
T Consensus 22 ~~~~~~~~~~gtDai~VGGS~-~-----~~~~d~vv~~ik~~----------------------------------~~lP 61 (230)
T PF01884_consen 22 EEALEAACESGTDAIIVGGSD-T-----GVTLDNVVALIKRV----------------------------------TDLP 61 (230)
T ss_dssp HHHHHHHHCTT-SEEEEE-ST-H-----CHHHHHHHHHHHHH----------------------------------SSS-
T ss_pred HHHHHHHHhcCCCEEEECCCC-C-----ccchHHHHHHHHhc----------------------------------CCCC
Confidence 567777788999999999987 1 23566778888874 3799
Q ss_pred EEEEcCCCCCCC
Q 006814 121 VFSIHGNHDDPA 132 (630)
Q Consensus 121 Vf~I~GNHD~p~ 132 (630)
|+.-|||++.-+
T Consensus 62 vilfPg~~~~vs 73 (230)
T PF01884_consen 62 VILFPGSPSQVS 73 (230)
T ss_dssp EEEETSTCCG--
T ss_pred EEEeCCChhhcC
Confidence 999999998654
No 143
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=43.04 E-value=30 Score=37.19 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=13.8
Q ss_pred HhcCCCEEEEcCCCCCCCCCC
Q 006814 48 EQKEVDFVLLGGDLFHENKPS 68 (630)
Q Consensus 48 ~~~~VD~VLlaGDLFd~~~Ps 68 (630)
..+++| ++++|||.+..-++
T Consensus 69 ~~~dId-~~~aGDLlnQ~i~s 88 (329)
T PF07451_consen 69 KKEDID-YLFAGDLLNQIISS 88 (329)
T ss_dssp -GGG-S-EEEEEETTCCCCHH
T ss_pred CHHHCe-EEEehhhhhhhHHH
Confidence 356799 56799999987544
No 144
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=42.21 E-value=20 Score=33.32 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=6.2
Q ss_pred HhhcchHHHHHHH
Q 006814 456 VNKDDRLAFYSCV 468 (630)
Q Consensus 456 v~k~d~~a~~~~v 468 (630)
|-|.++.||.+++
T Consensus 4 ipK~~r~~Iye~L 16 (124)
T PTZ00034 4 VPKANRKAIYRYL 16 (124)
T ss_pred cchHHHHHHHHHH
Confidence 3444555555443
No 145
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=40.74 E-value=59 Score=35.57 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=38.2
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHH
Q 006814 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~t 71 (630)
...+--++|.|+.++-.. -.+.++|++.+++.++| |++||=-|+-.+-..-|
T Consensus 48 ~eIv~TiiCGDnyf~en~---------eea~~~i~~mv~~~~pD-~viaGPaFnagrYG~ac 99 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENK---------EEALKKILEMVKKLKPD-VVIAGPAFNAGRYGVAC 99 (349)
T ss_pred CEEEEEEEECcchhhhCH---------HHHHHHHHHHHHhcCCC-EEEEcCCcCCchHHHHH
Confidence 344556778888776332 35778999999999999 77889999987654443
No 146
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=39.94 E-value=94 Score=30.05 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=25.7
Q ss_pred hcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCC-CCCChHHHHH
Q 006814 34 HDSFEAFEEICSIAE-QKEVDFVLLGGDLFHE-NKPSRSTLVK 74 (630)
Q Consensus 34 ~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~-~~Ps~~tl~~ 74 (630)
.|....+.+.++.+. .+++|+||.+|-.=-. ....++++..
T Consensus 45 ~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~ 87 (163)
T TIGR02667 45 KDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEP 87 (163)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHH
Confidence 345556666666665 3689999999988433 3344444443
No 147
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=38.15 E-value=85 Score=32.44 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHHhcCCCEEEEcCCC-CCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCCcEE
Q 006814 44 CSIAEQKEVDFVLLGGDL-FHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVF 122 (630)
Q Consensus 44 l~~A~~~~VD~VLlaGDL-Fd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~iPVf 122 (630)
++.+.+...|+|+++|=+ .. ...+..++..+++ ..+||+
T Consensus 25 ~~~~~~~gtdai~vGGS~~vt-----~~~~~~~v~~ik~-----------------------------------~~lPvi 64 (232)
T PRK04169 25 LEAICESGTDAIIVGGSDGVT-----EENVDELVKAIKE-----------------------------------YDLPVI 64 (232)
T ss_pred HHHHHhcCCCEEEEcCCCccc-----hHHHHHHHHHHhc-----------------------------------CCCCEE
Confidence 366777899999999966 33 3344556666664 268999
Q ss_pred EEcCCCCCCC
Q 006814 123 SIHGNHDDPA 132 (630)
Q Consensus 123 ~I~GNHD~p~ 132 (630)
.-|||++.-+
T Consensus 65 lfp~~~~~i~ 74 (232)
T PRK04169 65 LFPGNIEGIS 74 (232)
T ss_pred EeCCCccccC
Confidence 9999999755
No 148
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=36.40 E-value=38 Score=38.25 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=24.2
Q ss_pred HHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhh
Q 006814 45 SIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (630)
Q Consensus 45 ~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l 82 (630)
..+++.-||-+=+.||+||.. |-+. +.|+-|-.|
T Consensus 184 ~~iqrLvVDhLHiVGDIyDRG-P~pd---~Imd~L~~y 217 (648)
T COG3855 184 YLIQRLVVDHLHIVGDIYDRG-PYPD---KIMDTLINY 217 (648)
T ss_pred HHHHHHhhhheeeecccccCC-CCch---HHHHHHhhc
Confidence 445677899999999999974 3332 456666555
No 149
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=36.14 E-value=64 Score=32.14 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.8
Q ss_pred CCCCcEEEEcCCCCCCCC
Q 006814 116 NVGLPVFSIHGNHDDPAG 133 (630)
Q Consensus 116 ~~~iPVf~I~GNHD~p~~ 133 (630)
...+|+++|--+||....
T Consensus 87 ~~~~p~~~iwDDHDi~~n 104 (228)
T cd07389 87 LAQVPTIGIWDDHDIGDN 104 (228)
T ss_pred hhcCCEEEeccccccccc
Confidence 357899999999997654
No 150
>PRK15005 universal stress protein F; Provisional
Probab=33.78 E-value=93 Score=28.19 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q 006814 40 FEEICSIAEQKEVDFVLLG 58 (630)
Q Consensus 40 Feeil~~A~~~~VD~VLla 58 (630)
.+.|++.|.++++|+|+++
T Consensus 96 ~~~I~~~a~~~~~DLIV~G 114 (144)
T PRK15005 96 KDRILELAKKIPADMIIIA 114 (144)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 4678888888889988885
No 151
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.69 E-value=63 Score=27.52 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCC
Q 006814 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (630)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~i 119 (630)
.+++++.+.+..+|+|++-.++-+.+ ...+++.|++. ...+
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~~------~~~~~~~i~~~---------------------------------~~~~ 72 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDGD------GLELLEQIRQI---------------------------------NPSI 72 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSSB------HHHHHHHHHHH---------------------------------TTTS
T ss_pred HHHHHHHhcccCceEEEEEeeecccc------ccccccccccc---------------------------------cccc
Confidence 56788888999999999998887742 22455556553 2578
Q ss_pred cEEEEcCCCCC
Q 006814 120 PVFSIHGNHDD 130 (630)
Q Consensus 120 PVf~I~GNHD~ 130 (630)
|++++..++|.
T Consensus 73 ~ii~~t~~~~~ 83 (112)
T PF00072_consen 73 PIIVVTDEDDS 83 (112)
T ss_dssp EEEEEESSTSH
T ss_pred cEEEecCCCCH
Confidence 99999977774
No 152
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=33.37 E-value=90 Score=33.88 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=5.0
Q ss_pred ccCccccccCCc
Q 006814 551 ISDTKSATRGRK 562 (630)
Q Consensus 551 ~~~~~~~~~g~~ 562 (630)
..+.+...++..
T Consensus 290 ~~~~~~kk~~es 301 (367)
T KOG0835|consen 290 PVRTKHKKRPES 301 (367)
T ss_pred ccccccccCccc
Confidence 333444444443
No 153
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=32.04 E-value=1.3e+02 Score=30.88 Aligned_cols=55 Identities=29% Similarity=0.400 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCccceeeechhhhhcccccCccccCCCCCCCCC
Q 006814 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (630)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~lny~d~n~~~~i 119 (630)
.+++...|.+...|+|+++|=.-- + .++..+++++++.+ . .+
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v----~-~~~~~~~~~ik~~~--------------------------------~-~~ 55 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGV----S-STLDNVVRLIKRIR--------------------------------R-PV 55 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccch----h-hhHHHHHHHHHHhc--------------------------------C-CC
Confidence 345666677788999999996622 2 45667888888752 2 58
Q ss_pred cEEEEcCCCCCCC
Q 006814 120 PVFSIHGNHDDPA 132 (630)
Q Consensus 120 PVf~I~GNHD~p~ 132 (630)
||+.-|||++.-+
T Consensus 56 Pvilfp~~~~~i~ 68 (219)
T cd02812 56 PVILFPSNPEAVS 68 (219)
T ss_pred CEEEeCCCccccC
Confidence 9999999999653
No 154
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=31.48 E-value=41 Score=33.95 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=22.3
Q ss_pred CCcEEEeCcccccccCCeecCCCCceEEcCCCCc
Q 006814 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (630)
Q Consensus 245 ~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~ 278 (630)
+.|+|+.||+|...+ .... +..++.|||..
T Consensus 179 ~~~~vv~GHTh~~~~--~~~~--~~i~IDtGs~~ 208 (218)
T PRK09968 179 GADYFIFGHMMFDNI--QTFA--NQIYIDTGSPK 208 (218)
T ss_pred CCCEEEECCCCcCcc--eeEC--CEEEEECCCCC
Confidence 468999999998754 3333 36889999964
No 155
>PHA01794 hypothetical protein
Probab=30.73 E-value=89 Score=29.35 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=14.5
Q ss_pred ccCCCcHHHHHHHHHhhc
Q 006814 442 IIPVNDLDVALHNFVNKD 459 (630)
Q Consensus 442 ~l~~~~l~~a~~~fv~k~ 459 (630)
-|++++.-+|+.+||++.
T Consensus 49 ~lted~~~~aI~d~v~~~ 66 (134)
T PHA01794 49 ALTEDEILDAIADFVETF 66 (134)
T ss_pred ccChhhHHHHHHHHHHHh
Confidence 388888999999999554
No 156
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=30.64 E-value=7.8e+02 Score=27.25 Aligned_cols=60 Identities=12% Similarity=0.209 Sum_probs=43.3
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhh
Q 006814 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (630)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l 82 (630)
=|+++.|+=.|... .|....+.+++.=|++.++=.+.+-|.==|.+.-++. +.|+.+..+
T Consensus 103 lVVfTGD~i~g~~t------~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~---ql~~~i~~l 162 (379)
T KOG1432|consen 103 LVVFTGDNIFGHST------QDAATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRL---QLMKFISKL 162 (379)
T ss_pred EEEEeCCccccccc------HhHHHHHHHHhhhHhhcCCCeEEEecccccccccCHH---HHHHHHhcC
Confidence 37788888887433 3445667888899999999999999987666655554 455666554
No 157
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.37 E-value=2.4e+02 Score=26.68 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCC-CCChHHHHHH
Q 006814 35 DSFEAFEEICSIAEQK-EVDFVLLGGDLFHEN-KPSRSTLVKA 75 (630)
Q Consensus 35 Ds~~tFeeil~~A~~~-~VD~VLlaGDLFd~~-~Ps~~tl~~~ 75 (630)
|....+.+.++.+.++ +.|+|+.+|-.=... ...+.++.++
T Consensus 44 Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~ 86 (152)
T cd00886 44 DDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPL 86 (152)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHH
Confidence 3345566666655543 799999999885432 2344444433
No 158
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=30.36 E-value=62 Score=34.03 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=41.1
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCC--CCCCCChHHHHHHHHHHHhhc
Q 006814 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKAIEILRRHC 83 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLF--d~~~Ps~~tl~~~~~~Lr~l~ 83 (630)
.+..+|+|+||+.-- .+++.++...+.+||+++++|=.. =..+-+...+...++-|+++.
T Consensus 174 dg~~~i~faSDvqGp--------------~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii 235 (304)
T COG2248 174 DGKSSIVFASDVQGP--------------INDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERII 235 (304)
T ss_pred cCCeEEEEcccccCC--------------CccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHH
Confidence 456789999998732 124667777788999999999753 112234456677777777763
No 159
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.23 E-value=2e+02 Score=26.82 Aligned_cols=40 Identities=18% Similarity=0.044 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHh
Q 006814 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (630)
Q Consensus 38 ~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~ 81 (630)
.+-+++++.|.++++|+|.+++=+-. ....+..+++.|++
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~----~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGG----HLTLVPALRKELDK 79 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhh----hHHHHHHHHHHHHh
Confidence 35689999999999999999986632 23344555566654
No 160
>PRK10116 universal stress protein UspC; Provisional
Probab=29.10 E-value=1.4e+02 Score=26.96 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCCEEEEcC
Q 006814 40 FEEICSIAEQKEVDFVLLGG 59 (630)
Q Consensus 40 Feeil~~A~~~~VD~VLlaG 59 (630)
.+.|++.|.+.++|+|+++-
T Consensus 91 ~~~I~~~a~~~~~DLiV~g~ 110 (142)
T PRK10116 91 SEHILEVCRKHHFDLVICGN 110 (142)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 45677777777777777743
No 161
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=28.94 E-value=47 Score=30.81 Aligned_cols=9 Identities=56% Similarity=0.685 Sum_probs=3.7
Q ss_pred hhHHHHHHH
Q 006814 491 EDIILKVGE 499 (630)
Q Consensus 491 ~d~i~~~~~ 499 (630)
+.+|.++++
T Consensus 73 d~iid~vke 81 (134)
T KOG3293|consen 73 DEIIDKVKE 81 (134)
T ss_pred HHHHHHHHH
Confidence 334444443
No 162
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.65 E-value=2e+02 Score=27.13 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhh
Q 006814 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (630)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l 82 (630)
.-+++++.|++++||+|.++.=+.+ ....+..+++.|++.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~----~~~~~~~~~~~l~~~ 79 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGH----GEIDCKGLRQKCDEA 79 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc----CHHHHHHHHHHHHHC
Confidence 3589999999999999999876643 233456677777763
No 163
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=28.23 E-value=1.3e+02 Score=26.04 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCC
Q 006814 39 AFEEICSIAEQKEVDFVLLGGDL 61 (630)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDL 61 (630)
..+.|++.+.+.++|+|+++--=
T Consensus 90 ~~~~i~~~~~~~~~dliv~G~~~ 112 (140)
T PF00582_consen 90 VADAIIEFAEEHNADLIVMGSRG 112 (140)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSS
T ss_pred cchhhhhccccccceeEEEeccC
Confidence 46889999999999999998655
No 164
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=28.18 E-value=1.4e+02 Score=33.52 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=37.6
Q ss_pred CCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCCh
Q 006814 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR 69 (630)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~ 69 (630)
+...+.-++|.|+.++-.. -.+.++|++.+++.++| |+++|=-|+-.+-..
T Consensus 43 ~~eVvaTiiCGDnYf~en~---------eea~~~i~~mv~k~~pD-v~iaGPaFNagrYG~ 93 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENL---------EEAKAKVLEMIKGANPD-IFIAGPAFNAGRYGM 93 (431)
T ss_pred CCEEEEEEEECchhhhhCH---------HHHHHHHHHHHHhcCCC-EEEEcCccCCccHHH
Confidence 3444566778888776322 24678899999999999 788999999876443
No 165
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=27.99 E-value=65 Score=37.21 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=18.8
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHhhcC
Q 006814 455 FVNKDDRLAFYSCVQYNLQETRHKIAKDS 483 (630)
Q Consensus 455 fv~k~d~~a~~~~v~~~~~~~~~~~~~~~ 483 (630)
|-+.+...++.+.|++.|+...+......
T Consensus 481 ~~~~~~~~~~~E~i~~~lk~~~r~~~~~~ 509 (646)
T KOG2310|consen 481 FNEEDHIDKVEENIDEELKRFKRATRKRG 509 (646)
T ss_pred cchhhhcchHHHHHHHHHHHHHhhhccCC
Confidence 33444566677888888877776665443
No 166
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=27.92 E-value=1.5e+02 Score=33.48 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=37.0
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCCh
Q 006814 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR 69 (630)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~ 69 (630)
...+.-++|.|+.++-.. -.+.++|++.+++.++| |+++|=-|+-.+-..
T Consensus 44 ~eVvaTiiCGDnYf~en~---------eea~~~i~~mv~k~~pD-v~iaGPaFNagrYG~ 93 (431)
T TIGR01918 44 AEVVHTVVCGDSFFGENL---------EEAVARVLEMLKDKEPD-IFIAGPAFNAGRYGV 93 (431)
T ss_pred CEEEEEEEECchhhhhCH---------HHHHHHHHHHHHhcCCC-EEEEcCccCCccHHH
Confidence 344556778888776322 24678899999999999 788999999876443
No 167
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=27.78 E-value=1.2e+02 Score=34.07 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=17.8
Q ss_pred hhhHHHHHHhhc--ccccccCCCcHHHHHHHHHhh
Q 006814 426 QQNIEALVAENN--LKMEIIPVNDLDVALHNFVNK 458 (630)
Q Consensus 426 ~~~i~~~v~~~~--~~l~~l~~~~l~~a~~~fv~k 458 (630)
.+++.+|+.-.+ ....|+.+..+.+-++.|-.+
T Consensus 245 ~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~ 279 (484)
T KOG1855|consen 245 YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKK 279 (484)
T ss_pred HHHHHHHhhcccceeeeeecCCCCCCcccccCCcc
Confidence 467777775542 124566665555555555443
No 168
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=26.15 E-value=1.7e+02 Score=24.53 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=27.3
Q ss_pred CccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCC
Q 006814 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD 60 (630)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGD 60 (630)
..||||++.--+.. | +..+...|+.+.++.++++|+.|.
T Consensus 2 ~g~rVli~GgR~~~----D-------~~~i~~~Ld~~~~~~~~~~lvhGg 40 (71)
T PF10686_consen 2 EGMRVLITGGRDWT----D-------HELIWAALDKVHARHPDMVLVHGG 40 (71)
T ss_pred CCCEEEEEECCccc----c-------HHHHHHHHHHHHHhCCCEEEEECC
Confidence 46899998765543 2 234556677777777999988884
No 169
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=26.10 E-value=55 Score=32.50 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=22.0
Q ss_pred CCcEEEeCcccccccCCeecCCCCceEEcCCCCc
Q 006814 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (630)
Q Consensus 245 ~~DyVa~GH~H~~~i~p~~~~~~~~~I~yPGS~~ 278 (630)
+.++|+.||.|.+.+ .... +..++.|||-.
T Consensus 168 ~~~~iV~GHTh~~~~--~~~~--~~i~ID~Gsv~ 197 (207)
T cd07424 168 GVDAVVHGHTPVKRP--LRLG--NVLYIDTGAVF 197 (207)
T ss_pred CCCEEEECCCCCCcc--eEEC--CEEEEECCCCC
Confidence 358999999999764 3333 36788999863
No 170
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=25.97 E-value=1.4e+02 Score=29.86 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHh
Q 006814 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (630)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~ 81 (630)
..+++++.+....||+||+ ||.|-..|...-+. +++.|++
T Consensus 25 ~~~~~l~~~~~~~pd~vl~--dl~d~~mp~~~Gl~-~~~~l~~ 64 (207)
T PRK11475 25 SQSSFQDAMSRISFSAVIF--SLSAMRSERREGLS-CLTELAI 64 (207)
T ss_pred CHHHHHHHhccCCCCEEEe--eccccCCCCCCHHH-HHHHHHH
Confidence 3467777777778999988 88887777655432 3444443
No 171
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=25.80 E-value=54 Score=30.61 Aligned_cols=8 Identities=88% Similarity=1.610 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 006814 590 GRGRGRGR 597 (630)
Q Consensus 590 ~~~~~~~~ 597 (630)
|+|||.||
T Consensus 116 ~~gr~~~r 123 (124)
T PTZ00034 116 GRGRGYGR 123 (124)
T ss_pred CCCCCCCC
Confidence 33333333
No 172
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.62 E-value=2.1e+02 Score=25.92 Aligned_cols=38 Identities=32% Similarity=0.277 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHh
Q 006814 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (630)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~ 81 (630)
.+++++.|.+.++|+|++++-.-+ ....+...++.|++
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~~----~~~~~~~~~~~L~~ 76 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSGG----HMTLFPEVIELLRE 76 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccchh----hHHHHHHHHHHHHh
Confidence 578999999999999999987532 33334455555554
No 173
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.59 E-value=2.5e+02 Score=24.99 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhh
Q 006814 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (630)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l 82 (630)
..+++++.+.+.++|+|.++.=..+ ....+...++.+++.
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~----~~~~~~~~i~~l~~~ 77 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTT----HMTLMKEVIEELKEA 77 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc----cHHHHHHHHHHHHHc
Confidence 3578999999999999999876433 334455666666653
No 174
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=25.34 E-value=49 Score=35.97 Aligned_cols=10 Identities=20% Similarity=0.076 Sum_probs=4.1
Q ss_pred cccccCCccc
Q 006814 555 KSATRGRKWS 564 (630)
Q Consensus 555 ~~~~~g~~~~ 564 (630)
...+-||.+.
T Consensus 329 ~~~~ggrggg 338 (465)
T KOG3973|consen 329 FDRQGGRGGG 338 (465)
T ss_pred CCCCCCcCCC
Confidence 3333444443
No 175
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=22.99 E-value=98 Score=36.27 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=6.0
Q ss_pred hhhHHHHHHhh
Q 006814 426 QQNIEALVAEN 436 (630)
Q Consensus 426 ~~~i~~~v~~~ 436 (630)
.+.+.+++..+
T Consensus 247 ee~L~~~F~~f 257 (578)
T TIGR01648 247 EEIIEKSFSEF 257 (578)
T ss_pred HHHHHHHHHhc
Confidence 34456666655
No 176
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=21.79 E-value=97 Score=32.84 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCEEEEcC-CCCCCCC---------CChHHHHHHHHHHHhhcc---------CCCccceeeechhhhhc
Q 006814 41 EEICSIAEQKEVDFVLLGG-DLFHENK---------PSRSTLVKAIEILRRHCL---------NDRPVQFQVVSDQAVNF 101 (630)
Q Consensus 41 eeil~~A~~~~VD~VLlaG-DLFd~~~---------Ps~~tl~~~~~~Lr~l~~---------g~~p~~~~~lsd~~~~f 101 (630)
+.|.++..+.+||.|+++| |-+-.++ ...+-..+++..+|+|.- |-..-.||-|=++-.||
T Consensus 143 ~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS~yEall~AGANF 222 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQSHFESLIRAGANF 222 (283)
T ss_pred HHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCccc
Confidence 6788999999999999998 3332211 112235567777888742 22222456666666777
Q ss_pred ccccCccccCCCCCCCCCcEEEE
Q 006814 102 QNKFGHVNYEDPHFNVGLPVFSI 124 (630)
Q Consensus 102 ~~~~~~lny~d~n~~~~iPVf~I 124 (630)
.+.=.++| +.+==|||++
T Consensus 223 ASSP~RVl-----IHalDPV~i~ 240 (283)
T TIGR02855 223 ASSPSRVN-----IHALDPVYIV 240 (283)
T ss_pred cCCccceE-----EeccCcceeE
Confidence 65545554 3333366664
No 177
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.04 E-value=6.2e+02 Score=23.73 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhh
Q 006814 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (630)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l 82 (630)
.-+++++.|+++++|+|.+++=+-++ ...+.++++.|++.
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~----~~~~~~~~~~l~~~ 77 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHG----EIDCKGLREKCDEA 77 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCC----HHHHHHHHHHHHHC
Confidence 35899999999999999998755543 34566777888764
No 178
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=20.95 E-value=1.6e+02 Score=27.09 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q 006814 35 DSFEAFEEICSIAEQKEVDFVLLGGDLFHE 64 (630)
Q Consensus 35 Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~ 64 (630)
|....+.+.++.+.++ +|+||.+|-+=-.
T Consensus 43 Dd~~~i~~~i~~~~~~-~DlvittGG~g~g 71 (133)
T cd00758 43 DDADSIRAALIEASRE-ADLVLTTGGTGVG 71 (133)
T ss_pred CCHHHHHHHHHHHHhc-CCEEEECCCCCCC
Confidence 4455666777766655 9999999998443
No 179
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.76 E-value=3.5e+02 Score=27.83 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=43.8
Q ss_pred ccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChHHHHHHHHHHHhhc
Q 006814 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRSTLVKAIEILRRHC 83 (630)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~tl~~~~~~Lr~l~ 83 (630)
.+.|...+-..++....++..+.+.+..|..+++.|.+.+++.|++ .|-.- ..+.......+.+.|++++
T Consensus 59 ~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~--~~~~~~~~~~~~~~l~~l~ 129 (279)
T cd00019 59 SICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYL--GQSKEEGLKRVIEALNELI 129 (279)
T ss_pred CCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCC--CCCHHHHHHHHHHHHHHHH
Confidence 4455444333233333445567788899999999999999998776 44211 1233455666677777764
No 180
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=20.69 E-value=3.3e+02 Score=30.94 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHhhccCCCcccee
Q 006814 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (630)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~~Lr~l~~g~~p~~~~ 92 (630)
-+|+++||.||+-.. .+.+++.|++--...-|-+|+++|.+.....-. .+..+.-+-|+.+.
T Consensus 283 ~~fVfLSdV~LD~~~--------vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~-~s~~~~k~~f~~LA--------- 344 (525)
T KOG3818|consen 283 TSFVFLSDVFLDDKK--------VMEALRKIFQGYKDAPPTAIILCGSFTSSPRQT-SSSDQLKDGFRWLA--------- 344 (525)
T ss_pred ceEEEEehhccccHH--------HHHHHHHHHhhccCCCCeEEEEecccccccccc-chHHHHHHHHHHHH---------
Confidence 467888999997422 355666777666677788999999987654321 13333334444432
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006814 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (630)
Q Consensus 93 ~lsd~~~~f~~~~~~lny~d~n~~~~iPVf~I~GNHD~p~~ 133 (630)
++-..|. +.+ .....+.|||=.|....
T Consensus 345 ---~~l~~~~----------~~~-ekT~fIFVPGP~Dp~~~ 371 (525)
T KOG3818|consen 345 ---AQLTCFR----------KDY-EKTQFIFVPGPNDPWVD 371 (525)
T ss_pred ---hhccccc----------ccc-ccceEEEecCCCCCCcC
Confidence 1111121 111 23678999999887553
Done!