BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006816
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/654 (51%), Positives = 430/654 (65%), Gaps = 30/654 (4%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAV+ A +GHPG+ +G A +G+VLY M+YNP+N WFNRDRFVLSAGHGC+LQY
Sbjct: 25 FLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHLAG+ SV+ EDLK+ + GSRTPGHPEN T G+EVTTGPLGQG+ANAVGLALAE
Sbjct: 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEK 144
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
HLAARFNKPD+ +VDH TY I+ DGC MEGI++EA +LA HW L KL YDDNH +IDG
Sbjct: 145 HLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDG 204
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV------- 233
T + +ED+S RF++LGW+TI V+N + + A+ A T KPT I+V
Sbjct: 205 DTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFG 264
Query: 234 --------------------KKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
+ R+ + W D F V V T G LE +W
Sbjct: 265 SPNKANSYSVHGSALGAKEVEATRQNLGW-PYDTFFVPEDVKSHWSRHTPEGAALEADWN 323
Query: 274 SKVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKVL 333
+K Y KY + W +ALPK++ P DATR S++CLN LA V+
Sbjct: 324 AKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTPESPGDATRNLSQQCLNALANVV 383
Query: 334 PGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIP 393
PGLIGGSADLASSN L + DF Q D+ RN+R+GVREH M I NG+ALH G +P
Sbjct: 384 PGLIGGSADLASSNMTLLKMFGDF-QKDTAEERNVRFGVREHGMGAICNGIALHSPGFVP 442
Query: 394 FAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453
+ ATF +F+DYM+ ++R+SALS AGVIY++THDSIGLGEDGPTHQP+E L RA+P +L
Sbjct: 443 YCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNIL 502
Query: 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN 513
RPADGNETAG+Y+VA+ NR PS++ALSRQK+ +L GTS + VE+GGY +SDNS+ N
Sbjct: 503 MLRPADGNETAGAYKVAVLNRKRPSILALSRQKL-PHLPGTSIEGVEKGGYTISDNSTGN 561
Query: 514 KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKR 573
KP++I++GTG+EL + A LR+EG+ VRVVS V W LFD Q EYKE VLP+ V R
Sbjct: 562 KPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTAR 621
Query: 574 VSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSL 627
+S+EAGS++GW+ AS +K+YG T++++ A+S
Sbjct: 622 ISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAKSF 675
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/660 (41%), Positives = 370/660 (56%), Gaps = 42/660 (6%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
+L VD V A +GHPG LGMA +VL+ M+ NP N W NRDRFVLS GH L Y
Sbjct: 17 ILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLY 75
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +EDLK+ ++GSRTPGHPE G+EVTTGPLGQG++NAVG+A+A+A
Sbjct: 76 SMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVGMAMAQA 133
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
+LAA +NKP + D+ TY + DGC EGIS EA++LA H KL L IYDDN TIDG
Sbjct: 134 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDG 193
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR-------- 232
TS+ ED++ R+++ GW + VEN +++L+ +A+ A KPT I+
Sbjct: 194 ATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 253
Query: 233 ------------------VKKMRERVNWVDRDQFHVIPMVYREMQIQT-DHGERLEKEWC 273
VK+++ + + F V VY Q G +W
Sbjct: 254 SLHAGSHSVAGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWN 313
Query: 274 SKVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKVL 333
Y+ K+P WE+ LP ++ D ATR SE L + L
Sbjct: 314 KLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQL 373
Query: 334 PGLIGGSADLASSNKAYLLGYHDFSQPDSP----WGRNIRYGVREHAMAGISNGVALHGG 389
P LIGGSADL SN DF P S GR IRYG+REHAM I NG++ G
Sbjct: 374 PELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGA 433
Query: 390 GLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449
P+ TFL F Y ++RLSALS VI++ THDSIG+GEDGPTHQP+E LA R++
Sbjct: 434 NYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSL 493
Query: 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDN 509
P + +RPADGNE + +Y+ ++ ++ PS+IALSRQ + LEG+S + +GGY++ D
Sbjct: 494 PNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNL-PQLEGSSIESASKGGYVLQDV 552
Query: 510 SSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSR 569
++ P+IIL+ TG+E+SL AKTL + + RVVSL + FD+QP EY+ VLP
Sbjct: 553 AN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDN 609
Query: 570 VVKRVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSLLS 629
V +SVE ++ W ASG + FK +GFT + V + A+ ++
Sbjct: 610 -VPIMSVEVLATTCW---GKYAHQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQKTIA 665
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/660 (41%), Positives = 370/660 (56%), Gaps = 42/660 (6%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
+L VD V A +GHPG LGMA +VL+ M+ NP N W NRDRFVLS GH L Y
Sbjct: 17 ILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLY 75
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +EDLK+ ++GSRTPGHPE G+EVTTGPLGQG++NAVG+A+A+A
Sbjct: 76 SMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVGMAMAQA 133
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
+LAA +NKP + D+ TY + DGC EGIS EA++LA H KL L IYDDN TIDG
Sbjct: 134 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDG 193
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR-------- 232
TS+ ED++ R+++ GW + VEN +++L+ +A+ A KPT I+
Sbjct: 194 ATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 253
Query: 233 ------------------VKKMRERVNWVDRDQFHVIPMVYREMQIQT-DHGERLEKEWC 273
VK+++ + + F V VY Q G +W
Sbjct: 254 SLHAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWN 313
Query: 274 SKVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKVL 333
Y+ K+P WE+ LP ++ D ATR SE L + L
Sbjct: 314 KLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQL 373
Query: 334 PGLIGGSADLASSNKAYLLGYHDFSQPDSP----WGRNIRYGVREHAMAGISNGVALHGG 389
P LIGGSADL SN DF P S GR IRYG+REHAM I NG++ G
Sbjct: 374 PELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGA 433
Query: 390 GLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449
P+ TFL F Y ++RLSALS VI++ THDSIG+GEDGPTHQP+E LA R++
Sbjct: 434 NYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSL 493
Query: 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDN 509
P + +RPADGNE + +Y+ ++ ++ PS+IALSRQ + LEG+S + +GGY++ D
Sbjct: 494 PNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNL-PQLEGSSIESASKGGYVLQDV 552
Query: 510 SSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSR 569
++ P+IIL+ TG+E+SL AKTL + + RVVSL + FD+QP EY+ VLP
Sbjct: 553 AN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDN 609
Query: 570 VVKRVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSLLS 629
V +SVE ++ W ASG + FK +GFT + V + A+ ++
Sbjct: 610 -VPIMSVEVLATTCW---GKYAHQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQKTIA 665
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/660 (41%), Positives = 370/660 (56%), Gaps = 42/660 (6%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
+L VD V A +GHPG LGMA +VL+ M+ NP N W NRDRFVLS GH L Y
Sbjct: 15 ILAVDTVSKANSGHPGAPLGMAPAAHVLWSQ-MRMNPTNPDWINRDRFVLSNGHAVALLY 73
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +EDLK+ ++GSRTPGHPE G+EVTTGPLGQG++NAVG+A+A+A
Sbjct: 74 SMLHLTGYD-LSIEDLKQFRQLGSRTPGHPE-FELPGVEVTTGPLGQGISNAVGMAMAQA 131
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
+LAA +NKP + D+ TY + DGC EGIS EA++LA H KL L IYDDN TIDG
Sbjct: 132 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDG 191
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIR-------- 232
TS+ ED++ R+++ GW + VEN +++L+ +A+ A KPT I+
Sbjct: 192 ATSISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 251
Query: 233 ------------------VKKMRERVNWVDRDQFHVIPMVYREMQIQT-DHGERLEKEWC 273
VK+++ + + F V VY Q G +W
Sbjct: 252 SLHAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWN 311
Query: 274 SKVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKVL 333
Y+ K+P WE+ LP ++ D ATR SE L + L
Sbjct: 312 KLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQL 371
Query: 334 PGLIGGSADLASSNKAYLLGYHDFSQPDSP----WGRNIRYGVREHAMAGISNGVALHGG 389
P LIGGSADL SN DF P S GR IRYG+REHAM I NG++ G
Sbjct: 372 PELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGA 431
Query: 390 GLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAV 449
P+ TFL F Y ++RLSALS VI++ THDSIG+GEDGPTHQP+E LA R++
Sbjct: 432 NYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSL 491
Query: 450 PRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDN 509
P + +RPADGNE + +Y+ ++ ++ PS+IALSRQ + LEG+S + +GGY++ D
Sbjct: 492 PNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNL-PQLEGSSIESASKGGYVLQDV 550
Query: 510 SSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSR 569
++ P+IIL+ TG+E+SL AKTL + + RVVSL + FD+QP EY+ VLP
Sbjct: 551 AN---PDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDN 607
Query: 570 VVKRVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSLLS 629
V +SVE ++ W ASG + FK +GFT + V + A+ ++
Sbjct: 608 -VPIMSVEVLATTCW---GKYAHQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQKTIA 663
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 275/654 (42%), Positives = 367/654 (56%), Gaps = 43/654 (6%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L D VQ K+GHPG +GMA + VL+ MKYN ++ W +RDRFV+S GHGC LQY
Sbjct: 16 LAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYA 75
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
LH+AG+ ++ ++DLK + GSRTPGHPE VT G+EVTTGPLGQG+ANAVGLA+AEAH
Sbjct: 76 LLHMAGY-NLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAH 134
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
LAA FN+P +VDH TY DGC MEG+ EA +LA H L KL +IYD N+ +IDG
Sbjct: 135 LAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGS 194
Query: 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFI---------R 232
TSL +E ++ ++G++ I V+N + ++AL A KP I
Sbjct: 195 TSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFGS 254
Query: 233 VKKMRERVNWV--------------DRD---QFHVIPMVYREMQIQTDHGERLEKEWCSK 275
K+ E+V+ RD ++ V V ++ D +K W
Sbjct: 255 SKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEEL 314
Query: 276 VYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPG 335
+ Y + +P E WE LP S++ ATR SE CL L +P
Sbjct: 315 LAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPTNSSA---IATRKASENCLAVLFPAIPA 371
Query: 336 LIGGSADLASSN--KAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIP 393
L+GGSADL SN + DFS S GR IR+GVREHAM I NG+ H G+IP
Sbjct: 372 LMGGSADLTPSNLTRPASANLVDFSS-SSKEGRYIRFGVREHAMCAILNGLDAH-DGIIP 429
Query: 394 FAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLL 453
F TFL F Y ++RL+A+SH VIY+ THDSIG+GEDGPTHQPVE +A LRA+P L
Sbjct: 430 FGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQ 489
Query: 454 AFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSEN 513
RP+D ET+G++ VA+++ P+V+ LSRQ G+S + V G Y V D
Sbjct: 490 VIRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTEPQ-SGSSIEGVRHGAYSVVDVPDL- 547
Query: 514 KPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKR 573
+++++ +G+E+SL AK L E RVRVVS+ C LFD QP Y++ VLP+ V
Sbjct: 548 --QLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAG-VPV 603
Query: 574 VSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSL 627
VSVEA S GW +G +KK+G T++ V + R L
Sbjct: 604 VSVEAYVSFGWEKYSHAHVGMSGFGASAPAGVL---YKKFGITVEEVVRTGREL 654
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 271/656 (41%), Positives = 374/656 (57%), Gaps = 49/656 (7%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DAV+ A++GHPG G A + Y+L+R ++NP + W +RDRFVLSAGHG L Y
Sbjct: 17 FLAIDAVEKARSGHPGXPXGXAPLAYLLFREVXRHNPLDPDWPDRDRFVLSAGHGSXLLY 76
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + LE+LK + GS+TPGHPE T G+EVTTGPLGQG++ AVGLALAE
Sbjct: 77 AVLHLTGYD-LPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAER 135
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
LAA FN+P VVVDH TY + SDG EG+S EAA+LA HW L+KL + +DDN +IDG
Sbjct: 136 KLAAEFNRPGHVVVDHYTYVLASDGDLXEGVSGEAASLAGHWGLSKLIVFWDDNRISIDG 195
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKK----- 235
PT L +ED+ AR+++ GW T+ VE+++D L + ++A+ A + ++PT I V+
Sbjct: 196 PTDLAFTEDVLARYRAYGWQTLRVEDVND-LEALRKAIKLAKLD-ERPTLIAVRSHIGFG 253
Query: 236 ---------------------MRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
R + W F V VYR + + G ++ W
Sbjct: 254 SPKQDSAKAHGEPLGPEAVEATRRNLGW-PYPPFVVPEEVYRHXDXR-EKGRAWQEAWEK 311
Query: 275 KVYNYRSKYP--HEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKV 332
+ Y YP H+ + K P+ ATR S + LN LA
Sbjct: 312 ALEAYARAYPDLHQELXRRLRGELPPLPEEPPSFDK-----PI-ATRAASGRALNLLAPR 365
Query: 333 LPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLI 392
LP L+GGSADL SN G DFS+ + P GR + +GVREHA I NG+ LHGG
Sbjct: 366 LPELLGGSADLTPSNNTKAEGXEDFSRAN-PLGRYLHFGVREHAXGAILNGLNLHGG-YR 423
Query: 393 PFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRL 452
+ TFL+FSDY + +IRL+AL +++ THDSI LGEDGPTHQPVE L LRA P L
Sbjct: 424 AYGGTFLVFSDYXRPAIRLAALXGVPTVFVFTHDSIALGEDGPTHQPVEHLXSLRAXPNL 483
Query: 453 LAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSE 512
RPAD ET ++ VA+ ++ P+ + L+RQ + L A + RGGY++ D
Sbjct: 484 FVIRPADAYETFYAWLVALRRKEGPTALVLTRQAVPL-LSPEKARGLLRGGYVLEDV--- 539
Query: 513 NKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVK 572
+P+ +L+ TG+E+ L LR++G RVRVVSL + LF QP Y+++VLP +
Sbjct: 540 EEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPEAYRKEVLPPG-LP 598
Query: 573 RVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSLL 628
V+VEAG+S+GW AS Y + +++ GFT + V + SL+
Sbjct: 599 VVAVEAGASLGWE---RYAHKVVALDRFGASAPYPEVYERLGFTPERVAEAFLSLV 651
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust.
Identities = 280/674 (41%), Positives = 371/674 (55%), Gaps = 63/674 (9%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L +DAVQ A +GHPGM +GMAE+G L+ +K+NP N W +RDRFVLS GHG +L Y
Sbjct: 55 LAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYS 114
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
LHL G+ + +E+LK ++ S+TPGHPE +T G+E TTGPLGQG+ANAVG+AL EA
Sbjct: 115 LLHLTGYD-LPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEAL 173
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
LAA FN+ DA +VDH TY + DGC MEGISHEA +LA KLNKL +YDDN +IDG
Sbjct: 174 LAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGD 233
Query: 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFI---------- 231
+D RF++ GWN I N HD +A +A A + KP+ I
Sbjct: 234 VVNWFHDDTPKRFEAYGWNVIPNVNGHD--VDAIDAAIAKAKRSDKPSLICCKTRIGNGA 291
Query: 232 -----------------RVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
+ K RE + W VIP + G+R E +W +
Sbjct: 292 ATKAGGHDVHGAPLGADEIAKTREALGWTWAP--FVIPQEVYAAWDAKEAGKRSEDDWNA 349
Query: 275 KVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLD------------ATRGYS 322
YR+KYP E LP + ATR S
Sbjct: 350 AFAQYRAKYPAEAAEFERRMA--------GTLPADWAAKAAAIVAGANERGETVATRKAS 401
Query: 323 EKCLNQLAKVLPGLIGGSADLASSN----KAYLLGYHDFSQPDSPWGRNIRYGVREHAMA 378
++ + LA VLP L+GGSADL SN KA + P WG +I YGVRE M+
Sbjct: 402 QQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMS 461
Query: 379 GISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQ 438
NG+ LH GG PF TFL FSDY +N++R++AL I++ THDSIGLGEDGPTHQ
Sbjct: 462 AAINGLVLH-GGYKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQ 520
Query: 439 PVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSAD- 497
VE +A LR +P L +RPAD ETA ++ A+A++ PS + SRQ +A N T A
Sbjct: 521 SVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAHQH-PSCLIFSRQNLAFNAR-TDAQL 578
Query: 498 -EVERGGYIVSDNSSE-NKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFD 555
VE+GGY++ D E +IILI TG+E+ L + L Q+G RVVS+ +FD
Sbjct: 579 ANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFD 638
Query: 556 RQPAEYKEKVLPSRVVKRVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGF 615
RQ AEY+E+VLP V+RV++EAG + WR S FK +GF
Sbjct: 639 RQDAEYRERVLP-HGVRRVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGF 697
Query: 616 TIDNVTKVARSLLS 629
T+++V + A+++L+
Sbjct: 698 TVEHVIETAKAVLA 711
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 257/660 (38%), Positives = 363/660 (55%), Gaps = 43/660 (6%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L +DAVQ AK+GHPG +GMA++ VL+R +K+NP+N W +RDRFVLS GHG +L Y
Sbjct: 14 LSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYS 73
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
LHL G+ + +E+LK ++ S+TPGHPE T G+E TTGPLGQG+ANAVG+A+AE
Sbjct: 74 LLHLTGYD-LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKT 132
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
LAA+FN+P +VDH TY M DGC MEGISHE +LA KL KL YDDN +IDG
Sbjct: 133 LAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGH 192
Query: 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM----- 236
++D + RF++ GW+ I + HD +S K A+ A T KP+ + K +
Sbjct: 193 VEGWFTDDTAMRFEAYGWHVIRDIDGHD-AASIKRAVEEARAVTDKPSLLMCKTIIGFGS 251
Query: 237 ----------------------RERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
RE++ W F + +Y + + + G+ E W
Sbjct: 252 PNKAGTHDSHGAPLGDAEIALTREQLGW-KYAPFEIPSEIYAQWDAK-EAGQAKESAWNE 309
Query: 275 KVYNYRSKYPHEXXXXXXXXXXXXXXXWE----NALPKWSTSDPLDATRGYSEKCLNQLA 330
K Y YP E ++ + K + A+R S+ +
Sbjct: 310 KFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFG 369
Query: 331 KVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGG 390
+LP +GGSADLA SN G ++ + G I YGVRE M I+NG++LH GG
Sbjct: 370 PLLPEFLGGSADLAPSNLTLWSGSKAINEDAA--GNYIHYGVREFGMTAIANGISLH-GG 426
Query: 391 LIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVP 450
+P+ +TFL+F +Y +N++R++AL + + THDSIGLGEDGPTHQPVEQ+A LR P
Sbjct: 427 FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTP 486
Query: 451 RLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSAD--EVERGGYIVSD 508
+ +RP D E+A +++ + +D P+ + LSRQ +A E T + RGGY++ D
Sbjct: 487 NMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQ-ERTEEQLANIARGGYVLKD 545
Query: 509 NSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPS 568
+ + PE+I I TG+E+ L + L EG + RVVS+ FD+Q A Y+E VLP
Sbjct: 546 CAGQ--PELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPK 603
Query: 569 RVVKRVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSLL 628
V RV+VEAG + W S F+++GFT+DNV A+ LL
Sbjct: 604 AVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKELL 663
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 257/660 (38%), Positives = 363/660 (55%), Gaps = 43/660 (6%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L +DAVQ AK+GHPG +GMA++ VL+R +K+NP+N W +RDRFVLS GHG +L Y
Sbjct: 13 LSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYS 72
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
LHL G+ + +E+LK ++ S+TPGHPE T G+E TTGPLGQG+ANAVG+A+AE
Sbjct: 73 LLHLTGYD-LPMEELKNFRQLHSKTPGHPEVGKTAGVETTTGPLGQGIANAVGMAIAEKT 131
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
LAA+FN+P +VDH TY M DGC MEGISHE +LA KL KL YDDN +IDG
Sbjct: 132 LAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGH 191
Query: 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM----- 236
++D + RF++ GW+ I + HD +S K A+ A T KP+ + K +
Sbjct: 192 VEGWFTDDTAMRFEAYGWHVIRDIDGHD-AASIKRAVEEARAVTDKPSLLMCKTIIGFGS 250
Query: 237 ----------------------RERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
RE++ W F + +Y + + + G+ E W
Sbjct: 251 PNKAGTHDSHGAPLGDAEIALTREQLGW-KYAPFEIPSEIYAQWDAK-EAGQAKESAWNE 308
Query: 275 KVYNYRSKYPHEXXXXXXXXXXXXXXXWE----NALPKWSTSDPLDATRGYSEKCLNQLA 330
K Y YP E ++ + K + A+R S+ +
Sbjct: 309 KFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFG 368
Query: 331 KVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGG 390
+LP +GGSADLA SN G ++ + G I YGVRE M I+NG++LH GG
Sbjct: 369 PLLPEFLGGSADLAPSNLTLWSGSKAINEDAA--GNYIHYGVREFGMTAIANGISLH-GG 425
Query: 391 LIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVP 450
+P+ +TFL+F +Y +N++R++AL + + THDSIGLGEDGPTHQPVEQ+A LR P
Sbjct: 426 FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTP 485
Query: 451 RLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSAD--EVERGGYIVSD 508
+ +RP D E+A +++ + +D P+ + LSRQ +A E T + RGGY++ D
Sbjct: 486 NMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQ-ERTEEQLANIARGGYVLKD 544
Query: 509 NSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPS 568
+ + PE+I I TG+E+ L + L EG + RVVS+ FD+Q A Y+E VLP
Sbjct: 545 CAGQ--PELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPK 602
Query: 569 RVVKRVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSLL 628
V RV+VEAG + W S F+++GFT+DNV A+ LL
Sbjct: 603 AVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKELL 662
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/659 (40%), Positives = 362/659 (54%), Gaps = 38/659 (5%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DA++ A +GHPG G A Y L+ K+NP N WFNRDRFVLSAGHG L Y
Sbjct: 39 TLSIDAIEKANSGHPGXPXGAAPXAYTLWTQFXKHNPNNPTWFNRDRFVLSAGHGSXLLY 98
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL+G+ V +DLK + GS+TPGHPE T G++ TTGPLGQG+A AVG A AE
Sbjct: 99 SLLHLSGYD-VTXDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGXAXAER 157
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
HLAA++N+ +VDH TY I DG EG+S EA++LAAH +L +L ++YD N ++DG
Sbjct: 158 HLAAKYNRDAYNIVDHYTYAICGDGDLXEGVSAEASSLAAHLQLGRLVVLYDSNDISLDG 217
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRV------- 233
+ SE + R+K+ GW I VE+ +D + + +A+ A + K+PT I V
Sbjct: 218 DLNRSFSESVEDRYKAYGWQVIRVEDGND-IEAIAKAIEEAKADEKRPTLIEVRTTIGFG 276
Query: 234 --------------------KKMRERVNWVDRDQFHVIPMVYREM-QIQTDHGERLEKEW 272
K +E W FHV VY + D GE + EW
Sbjct: 277 SPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEW 336
Query: 273 CSKVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKV 332
+ + Y YP WE LP + ATR S +N +A+
Sbjct: 337 NTXLGEYAQAYPELANELQAAXNGLLPEGWEQNLPTYELGSKA-ATRNSSGAVINAIAES 395
Query: 333 LPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLI 392
+P GGSADLA SNK Y DF++ D G+NI YGVRE A NG+ALH GGL
Sbjct: 396 VPSFFGGSADLAGSNKTYXNNEKDFTRDDYS-GKNIWYGVREFAXGAAXNGIALH-GGLK 453
Query: 393 PFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRL 452
+ TF +FSDY++ +IRL+AL V Y+ THDSI +GEDGPTH+P+EQLA LRA P +
Sbjct: 454 TYGGTFFVFSDYLRPAIRLAALXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAXPNV 513
Query: 453 LAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSAD---EVERGGYIVSDN 509
RPADGNE+ ++R+A+ + + P+ + L+RQ + LEG D +V +G Y+VS +
Sbjct: 514 SVIRPADGNESVAAWRLALESTNKPTALVLTRQDL-PTLEGAKDDTYEKVAKGAYVVSAS 572
Query: 510 SSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSR 569
E ++IL+ TG+E+SL K L +G VVS F+ Q AEYKE VLP
Sbjct: 573 KKETA-DVILLATGSEVSLAVEAQKALAVDGVDASVVSXPSXDRFEAQTAEYKESVLPKA 631
Query: 570 VVKRVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSLL 628
V KR ++E G++ GW AS ++YGFT++NV + + L
Sbjct: 632 VTKRFAIEXGATFGWHRYVGLEGDVLGIDTFGASAPGEKIXEEYGFTVENVVRKVKEXL 690
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 279/674 (41%), Positives = 370/674 (54%), Gaps = 63/674 (9%)
Query: 2 LIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYV 61
L +DAVQ A +GHPGM +GMAE+G L+ +K+NP N W +RDRFVLS GHG +L Y
Sbjct: 55 LAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYS 114
Query: 62 CLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEAH 121
LHL G+ + +E+LK ++ S+TPGHPE +T G+E TTGPLGQG+ANAVG+AL EA
Sbjct: 115 LLHLTGYD-LPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEAL 173
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGP 181
LAA FN+ DA +VDH TY + DG MEGISHEA +LA KLNKL +YDDN +IDG
Sbjct: 174 LAAEFNRDDAKIVDHHTYVFLGDGXLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGD 233
Query: 182 TSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFI---------- 231
+D RF++ GWN I N HD +A +A A + KP+ I
Sbjct: 234 VVNWFHDDTPKRFEAYGWNVIPNVNGHD--VDAIDAAIAKAKRSDKPSLICCKTRIGNGA 291
Query: 232 -----------------RVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
+ K RE + W VIP + G+R E +W +
Sbjct: 292 ATKAGGHDVHGAPLGADEIAKTREALGWTWAP--FVIPQEVYAAWDAKEAGKRSEDDWNA 349
Query: 275 KVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLD------------ATRGYS 322
YR+KYP E LP + ATR S
Sbjct: 350 AFAQYRAKYPAEAAEFERRMA--------GTLPADWAAKAAAIVAGANERGETVATRKAS 401
Query: 323 EKCLNQLAKVLPGLIGGSADLASSN----KAYLLGYHDFSQPDSPWGRNIRYGVREHAMA 378
++ + LA VLP L+GGSADL SN KA + P WG +I YGVRE M+
Sbjct: 402 QQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMS 461
Query: 379 GISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQ 438
NG+ LH GG PF TFL FSDY +N++R++AL I++ THDSIGLGEDGPTHQ
Sbjct: 462 AAINGLVLH-GGYKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQ 520
Query: 439 PVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSAD- 497
VE +A LR +P L +RPAD ETA ++ A+A++ PS + SRQ +A N T A
Sbjct: 521 SVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAHQH-PSCLIFSRQNLAFNAR-TDAQL 578
Query: 498 -EVERGGYIVSDNSSE-NKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFD 555
VE+GGY++ D E +IILI TG+E+ L + L Q+G RVVS+ +FD
Sbjct: 579 ANVEKGGYVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFD 638
Query: 556 RQPAEYKEKVLPSRVVKRVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGF 615
RQ AEY+E+VLP V+RV++EAG + WR S FK +GF
Sbjct: 639 RQDAEYRERVLP-HGVRRVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGF 697
Query: 616 TIDNVTKVARSLLS 629
T+++V + A+++L+
Sbjct: 698 TVEHVIETAKAVLA 711
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/659 (37%), Positives = 348/659 (52%), Gaps = 47/659 (7%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
+L DAVQ GHPG A+ +A + Y L++ M+++P + W RDRFVLSAGH L Y
Sbjct: 32 VLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLY 91
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
+ L+L GF ++L D++ L GS+TPGHPE T G+E+TTGPLGQG+A+AVG+A+A
Sbjct: 92 IQLYLGGF-GLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASR 150
Query: 121 HLAARFN---KPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNT 177
+ F+ +P A DH Y I SDG EG++ EA++LAA +L L + YD N +
Sbjct: 151 YERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQIS 210
Query: 178 IDGPTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFI------ 231
I+ T++ L ED +AR+++ GW+ VE +N+ +EA+ A T +P+FI
Sbjct: 211 IEDDTNIALCEDTAARYRAYGWHVQEVEG-GENVVGIEEAIANAQAVTDRPSFIALRTVI 269
Query: 232 ---------------------RVKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEK 270
V +++ V + F V V + G++ +
Sbjct: 270 GYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHE 329
Query: 271 EWCSKVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLA 330
W + + + P W+ LP W ATR S L+ L
Sbjct: 330 RWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALG 389
Query: 331 KVLPGLIGGSADLASSNKAYLLGYHDFSQPDSP--------WGRNIRYGVREHAMAGISN 382
LP L GGSADLA SN + G F P +GR + +GVREHAM I +
Sbjct: 390 PKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILS 449
Query: 383 GVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ 442
G+ LHG + TFL FSDYM+ ++RL+AL IY+ THDSIGLGEDGPTHQP+E
Sbjct: 450 GIVLHGPTRA-YGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEH 508
Query: 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIANRD--VPSVIALSRQKIAANLEGTSADEVE 500
L+ LRA+PRL RPAD NETA ++R +A R+ P + L+RQ + L+GT A+ V
Sbjct: 509 LSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV-LDGTDAEGVA 567
Query: 501 RGGYIVSDNSS---ENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQ 557
RGGY++SD +P++ILI TG+E+ L L RVVS+ C F+ Q
Sbjct: 568 RGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQ 627
Query: 558 PAEYKEKVLPSRVVKRVSVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFT 616
P EY++ VLP V RV+VEAG + W S + F++YGFT
Sbjct: 628 PYEYRDAVLPPTVSARVAVEAGVAQCWHQLVGDTGEIVSIEHYGESADHKTLFREYGFT 686
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 243/663 (36%), Positives = 350/663 (52%), Gaps = 59/663 (8%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L +DA AK+GHPG G A++ VL+ +K+NP N W NRDRFVLS GHG L Y
Sbjct: 15 FLSIDATLKAKSGHPGXPXGXADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSXLLY 74
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL G+ + +ED+K ++ S+TPGHPE T G+E TTGPLGQGVANAVG AL E
Sbjct: 75 SLLHLTGYD-LSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGXALGEK 133
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
L+ R+N PD V+DH TY + DG EG+SHEA +LA LNKL +DDN+ +IDG
Sbjct: 134 LLSDRYNTPDLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNISIDG 193
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKM---- 236
T S++ RF++ GW+ I + HD + ++A+ A ++ +KPT I K +
Sbjct: 194 DTKGWFSDNTPERFRAYGWHVIENVDGHD-FVAIEKAINEAHSQQQKPTLICCKTVIGFG 252
Query: 237 -----------------RER------VNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWC 273
+ER +NW D F + VY+ + + G+ LE W
Sbjct: 253 SPEKAGTASVHGSPLSDQERASAAKELNW-DYQAFEIPQDVYKYWDAR-EKGQALEANWQ 310
Query: 274 SKVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKW---STSDPLD-ATRGYSEKCLNQL 329
+ ++ + E+A+ + S+P+ ATR S+ L L
Sbjct: 311 GQRNLFKDSPKFDEFERVLSKELPVGL--ESAINDYIASQLSNPVKVATRKASQXVLEVL 368
Query: 330 AKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRN-------IRYGVREHAMAGISN 382
K P GGSADL SN G S W N + YGVRE A I N
Sbjct: 369 CKNXPEXFGGSADLTGSNNTNWSG--------SVWLNNTQEGANYLSYGVREFGXAAIXN 420
Query: 383 GVALHGGGLIPFAATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQ 442
G++L+ GG+ P+ TFL+FSDY +N+IR SAL V+++ +HDSIGLGEDGPTHQP+E
Sbjct: 421 GLSLY-GGIKPYGGTFLVFSDYSRNAIRXSALXKQPVVHVXSHDSIGLGEDGPTHQPIEH 479
Query: 443 LAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGT-SADEVER 501
+ LR +P L +RPAD ET +++ A+ ++D PSV L+RQ + ++ + R
Sbjct: 480 VPSLRLIPNLSVWRPADTIETXIAWKEAVKSKDTPSVXVLTRQNLXPVVQTQHQVANIAR 539
Query: 502 GGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEY 561
GGY+V DN ++ ++ TG+E+ L A ++G ++ V S+ C +F Q EY
Sbjct: 540 GGYLVKDNPDA---KLTIVATGSEVELAVKVANEFEKKGIKLNVASIPCVEVFATQAHEY 596
Query: 562 KEKVLPSRVVKRVSVEAGSSVGW-RXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNV 620
K+ V+ + V VE W + S D FK++GFT++N+
Sbjct: 597 KKTVIKDD-IPAVFVEXAQPDXWYKYXPKAGGEVKGIYSFGESAPAEDLFKRFGFTVENI 655
Query: 621 TKV 623
+ +
Sbjct: 656 SNI 658
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 246/656 (37%), Positives = 349/656 (53%), Gaps = 64/656 (9%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L D VQ A +GHPG LG+A++ VL H +K+NP+N W NRDR V S GH L Y
Sbjct: 15 FLSADXVQKANSGHPGAPLGLADILSVLSYH-LKHNPKNPTWLNRDRLVFSGGHASALLY 73
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL+G+ + LEDLK ++ S+TPGHPE + T G+E+ TGPLGQGVANAVG A A A
Sbjct: 74 SFLHLSGYD-LSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGPLGQGVANAVGFAXA-A 130
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
A D ++DH+ YC+ DG EGIS+EA +LA KL+ LIYD N+ +I+G
Sbjct: 131 KKAQNLLGSD--LIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEG 188
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETK------KPTFIR-- 232
L +E++ RF++ G+ + + N HD +AL A TK K T +
Sbjct: 189 DVGLAFNENVKXRFEAQGFEVLSI-NGHD-YEEINKALEQAKKSTKPCLIIAKTTIAKGA 246
Query: 233 ------------------VKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
+KK +E+ + FH+ + + G+ E +W
Sbjct: 247 GELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKD 306
Query: 275 KVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKVLP 334
K+ K E A P + D ATR + + LN LAK L
Sbjct: 307 KLEKSAKKELLERLLNPDFNKI--------AYPDFKGKDL--ATRDSNGEILNVLAKNLE 356
Query: 335 GLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPF 394
G +GGSADL SNK L DF + G+NI +G+REHA A I+N A +G +PF
Sbjct: 357 GFLGGSADLGPSNKTELHSXGDFVE-----GKNIHFGIREHAXAAINNAFARYGI-FLPF 410
Query: 395 AATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLA 454
+ATF IFS+Y+K + R++AL +I THDSIG+GEDGPTHQP+EQL+ RA P L
Sbjct: 411 SATFFIFSEYLKPAARIAALXKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAXPNFLT 470
Query: 455 FRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENK 514
FRPADG E ++++A+ N D+PS LSRQK+ A E D V+ G Y++ ++ +
Sbjct: 471 FRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGD-VKNGAYLLKESK---E 525
Query: 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRV 574
+ L+ +G+E+ LC +A L ++G VVS C+ LF++Q Y+E++L V +
Sbjct: 526 AKFTLLASGSEVWLCLESANELEKQGFACNVVSXPCFELFEKQDKAYQERLLKGEV---I 582
Query: 575 SVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSLLSE 630
VEA S SG D F+++GF+ V+K+ +LS+
Sbjct: 583 GVEAAHS---NELYKFCHKVYGIESFGESGKDKDVFERFGFS---VSKLVNFILSK 632
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 246/656 (37%), Positives = 349/656 (53%), Gaps = 64/656 (9%)
Query: 1 MLIVDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQY 60
L D VQ A +GHPG LG+A++ VL H +K+NP+N W NRDR V S GH L Y
Sbjct: 18 FLSADXVQKANSGHPGAPLGLADILSVLSYH-LKHNPKNPTWLNRDRLVFSGGHASALLY 76
Query: 61 VCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGPLGQGVANAVGLALAEA 120
LHL+G+ + LEDLK ++ S+TPGHPE + T G+E+ TGPLGQGVANAVG A A A
Sbjct: 77 SFLHLSGYD-LSLEDLKNFRQLHSKTPGHPE-ISTLGVEIATGPLGQGVANAVGFAXA-A 133
Query: 121 HLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDG 180
A D ++DH+ YC+ DG EGIS+EA +LA KL+ LIYD N+ +I+G
Sbjct: 134 KKAQNLLGSD--LIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEG 191
Query: 181 PTSLVLSEDISARFKSLGWNTIMVENIHDNLSSFKEALMAAANETK------KPTFIR-- 232
L +E++ RF++ G+ + + N HD +AL A TK K T +
Sbjct: 192 DVGLAFNENVKXRFEAQGFEVLSI-NGHD-YEEINKALEQAKKSTKPCLIIAKTTIAKGA 249
Query: 233 ------------------VKKMRERVNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCS 274
+KK +E+ + FH+ + + G+ E +W
Sbjct: 250 GELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKD 309
Query: 275 KVYNYRSKYPHEXXXXXXXXXXXXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKVLP 334
K+ K E A P + D ATR + + LN LAK L
Sbjct: 310 KLEKSAKKELLERLLNPDFNKI--------AYPDFKGKDL--ATRDSNGEILNVLAKNLE 359
Query: 335 GLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPF 394
G +GGSADL SNK L DF + G+NI +G+REHA A I+N A +G +PF
Sbjct: 360 GFLGGSADLGPSNKTELHSXGDFVE-----GKNIHFGIREHAXAAINNAFARYGI-FLPF 413
Query: 395 AATFLIFSDYMKNSIRLSALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLA 454
+ATF IFS+Y+K + R++AL +I THDSIG+GEDGPTHQP+EQL+ RA P L
Sbjct: 414 SATFFIFSEYLKPAARIAALXKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAXPNFLT 473
Query: 455 FRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENK 514
FRPADG E ++++A+ N D+PS LSRQK+ A E D V+ G Y++ ++ +
Sbjct: 474 FRPADGVENVKAWQIAL-NADIPSAFVLSRQKLKALNEPVFGD-VKNGAYLLKESK---E 528
Query: 515 PEIILIGTGTELSLCEGTAKTLRQEGRRVRVVSLVCWRLFDRQPAEYKEKVLPSRVVKRV 574
+ L+ +G+E+ LC +A L ++G VVS C+ LF++Q Y+E++L V +
Sbjct: 529 AKFTLLASGSEVWLCLESANELEKQGFACNVVSXPCFELFEKQDKAYQERLLKGEV---I 585
Query: 575 SVEAGSSVGWRXXXXXXXXXXXXXXXXASGAYLDTFKKYGFTIDNVTKVARSLLSE 630
VEA S SG D F+++GF+ V+K+ +LS+
Sbjct: 586 GVEAAHS---NELYKFCHKVYGIESFGESGKDKDVFERFGFS---VSKLVNFILSK 635
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 151/561 (26%), Positives = 240/561 (42%), Gaps = 51/561 (9%)
Query: 4 VDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCL 63
+ A A +GHP AE+ VL+ H M+Y ++ + + DRFVLS GH + Y
Sbjct: 25 IQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAVW 84
Query: 64 HLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGI-EVTTGPLGQGVANAVGLALAEAHL 122
AGF + +L L K+ S GHP V + +V TG LGQG+ A G+ A+
Sbjct: 85 AEAGF--LAEAELLNLRKISSDLDGHP--VPKQAFTDVATGSLGQGLGAACGM----AYT 136
Query: 123 AARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182
F+K +R YC++ DG EG EA A A+ +KL+ L I D N P
Sbjct: 137 GKYFDK-----ASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPA 191
Query: 183 SLVLSEDI-SARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER-- 239
L DI R ++ GW+ I+V+ S +E A +PT I K + R
Sbjct: 192 PLQHQMDIYQKRCEAFGWHAIIVDG-----HSVEELCKAFGQAKHQPTAIIAKTFKGRGI 246
Query: 240 VNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYR---SKYPHEXXXXXXXXXX 296
D++ +H P+ + E++ +E S++ + + + P E
Sbjct: 247 TGVEDKESWHGKPL-------PKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANI 299
Query: 297 XXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHD 356
+LP + D + ATR + L +L +I D +S + +
Sbjct: 300 RMP-----SLPSYKVGDKI-ATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKE- 352
Query: 357 FSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSH 416
PD R I + E M I+ G A +PF +TF F + IR++A+S
Sbjct: 353 --HPD----RFIECYIAEQNMVSIAVGCATR-NRTVPFCSTFAAFFTRAFDQIRMAAISE 405
Query: 417 AGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDV 476
+ + +H + +GEDGP+ +E LA R+VP F P+DG T + +A AN
Sbjct: 406 SNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELA-ANTKG 464
Query: 477 PSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTL 536
I SR + A +V + ++ ++ +IG G L A+ L
Sbjct: 465 ICFIRTSRPENAIIYNNNEDFQVGQAKVVLKSKDD----QVTVIGAGVTLHEALAAAELL 520
Query: 537 RQEGRRVRVVSLVCWRLFDRQ 557
++E +RV+ + DR+
Sbjct: 521 KKEKINIRVLDPFTIKPLDRK 541
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 151/561 (26%), Positives = 240/561 (42%), Gaps = 51/561 (9%)
Query: 4 VDAVQNAKAGHPGMALGMAEVGYVLYRHAMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCL 63
+ A A +GHP AE+ VL+ H M+Y ++ + + DRFVLS GH + Y
Sbjct: 23 IQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYAVW 82
Query: 64 HLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGI-EVTTGPLGQGVANAVGLALAEAHL 122
AGF + +L L K+ S GHP V + +V TG LGQG+ A G+ A+
Sbjct: 83 AEAGF--LAEAELLNLRKISSDLDGHP--VPKQAFTDVATGSLGQGLGAACGM----AYT 134
Query: 123 AARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPT 182
F+K +R YC++ DG EG EA A A+ +KL+ L I D N P
Sbjct: 135 GKYFDK-----ASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPA 189
Query: 183 SLVLSEDI-SARFKSLGWNTIMVENIHDNLSSFKEALMAAANETKKPTFIRVKKMRER-- 239
L DI R ++ GW+ I+V+ S +E A +PT I K + R
Sbjct: 190 PLQHQMDIYQKRCEAFGWHAIIVDG-----HSVEELCKAFGQAKHQPTAIIAKTFKGRGI 244
Query: 240 VNWVDRDQFHVIPMVYREMQIQTDHGERLEKEWCSKVYNYR---SKYPHEXXXXXXXXXX 296
D++ +H P+ + E++ +E S++ + + + P E
Sbjct: 245 TGVEDKESWHGKPL-------PKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANI 297
Query: 297 XXXXXWENALPKWSTSDPLDATRGYSEKCLNQLAKVLPGLIGGSADLASSNKAYLLGYHD 356
+LP + D + ATR + L +L +I D +S + +
Sbjct: 298 RMP-----SLPSYKVGDKI-ATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKE- 350
Query: 357 FSQPDSPWGRNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLSALSH 416
PD R I + E M I+ G A +PF +TF F + IR++A+S
Sbjct: 351 --HPD----RFIECYIAEQNMVSIAVGCATR-NRTVPFCSTFAAFFTRAFDQIRMAAISE 403
Query: 417 AGVIYILTHDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDV 476
+ + +H + +GEDGP+ +E LA R+VP F P+DG T + +A AN
Sbjct: 404 SNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELA-ANTKG 462
Query: 477 PSVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSLCEGTAKTL 536
I SR + A +V + ++ ++ +IG G L A+ L
Sbjct: 463 ICFIRTSRPENAIIYNNNEDFQVGQAKVVLKSKDD----QVTVIGAGVTLHEALAAAELL 518
Query: 537 RQEGRRVRVVSLVCWRLFDRQ 557
++E +RV+ + DR+
Sbjct: 519 KKEKINIRVLDPFTIKPLDRK 539
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 366 RNIRYGVREHAMAGISNGVALHGGGLIPFAATFLIFSDYMKNSIRLS-ALSHAGVIYILT 424
R + G+ E + G+AL G + P A + F + + A+ H V + +
Sbjct: 365 RYLDVGIAEEVAVTTAAGMALQG--MRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCID 422
Query: 425 HDSIGLGEDGPTHQPVEQLAGLRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSR 484
I +G DG TH V L+ LR++P + P D E G + A D P I R
Sbjct: 423 RAGI-VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYA-QTHDGPFAIRYPR 480
Query: 485 QKIAANLEGTSAD 497
A GT D
Sbjct: 481 GNTAQVPAGTWPD 493
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 19/181 (10%)
Query: 327 NQLAKVLPGLIGGSADLASSNKAYLLGYHDFSQPDSPWGRNIRYGVREHAMAGISNGVAL 386
N+L + P GS + S K PD R + E + G+A+
Sbjct: 337 NKLXAITPAXREGSGXVEFSRKF----------PD----RYFDVAIAEQHAVTFAAGLAI 382
Query: 387 HGGGLIPFAATFLIFSDYMKNSIRLS-ALSHAGVIYILTHDSIGLGEDGPTHQPVEQLAG 445
GG P A + F + + A+ V++ + I +G DG THQ L+
Sbjct: 383 --GGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI-VGADGQTHQGAFDLSY 439
Query: 446 LRAVPRLLAFRPADGNETAGSYRVAIANRDVPSVIALSRQKIAANLEGTSADEVERGGYI 505
LR +P + P+D NE D PS + R A +E T +++ G I
Sbjct: 440 LRCIPEXVIXTPSDENECRQXLYTGYHYNDGPSAVRYPRGN-AVGVELTPLEKLPIGKGI 498
Query: 506 V 506
V
Sbjct: 499 V 499
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 478 SVIALSRQKIAANLEGTSADEVERGGYIVSDNSSENKPEIILIGTGTELSL 528
S++ + +Q ++A L+ T A E E G ++V+ NS +N P + I G E L
Sbjct: 221 SLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPL 271
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 138 TYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTS---LVLSEDISARF 194
Y + DG E S A +A KL+ L + + N +DGP + +++E + F
Sbjct: 224 VYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINE-LEGIF 282
Query: 195 KSLGWNTIMV 204
+ GWN I V
Sbjct: 283 EGAGWNVIKV 292
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 138 TYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTS---LVLSEDISARF 194
Y + DG E S A +A KL+ L + + N +DGP + +++E + F
Sbjct: 224 VYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINE-LEGIF 282
Query: 195 KSLGWNTIMV 204
+ GWN I V
Sbjct: 283 EGAGWNVIKV 292
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 138 TYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTS---LVLSEDISARF 194
Y + DG E S A +A KL+ L + + N +DGP + +++E + F
Sbjct: 224 VYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINE-LEGIF 282
Query: 195 KSLGWNTIMV 204
+ GWN I V
Sbjct: 283 EGAGWNVIKV 292
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 65 LAGFQSVQLEDLKRLCKMGSRTPGHPENVVTE---GIEVTTGPLGQGVANAVGLALAEAH 121
L G + ++E + R+ K G RTPG + + + EV L + V L +
Sbjct: 420 LPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLY 479
Query: 122 LAARFNKPDAVVVDHRTYCIMSDGCAMEGI 151
A +P AV DH + DG + EG+
Sbjct: 480 AAHNVTEPGAVKTDHLYKGVDIDGESDEGV 509
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 138 TYCIMSDGCAMEGISHEAAALAAHWKLNKLTLIYDDNHNTIDGPTS---LVLSEDISARF 194
Y + DG S A +A KL+ L + + N +DGP + +++E + F
Sbjct: 224 VYAFLGDGEMDAPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINE-LEGIF 282
Query: 195 KSLGWNTIMV 204
+ GWN I V
Sbjct: 283 EGAGWNVIKV 292
>pdb|4EYU|A Chain A, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EYU|B Chain B, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EZ4|A Chain A, Free Kdm6b Structure
pdb|4EZ4|B Chain B, Free Kdm6b Structure
pdb|4EZH|A Chain A, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
pdb|4EZH|B Chain B, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
Length = 486
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 32 AMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPE 91
A ++ P+ + F+ G +L +V + G +VQL + GSRTPGH E
Sbjct: 180 AKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQL----YMKVPGSRTPGHQE 235
Query: 92 NVVTEGIEVTTGP 104
N + + GP
Sbjct: 236 NNNFCSVNINIGP 248
>pdb|2XUE|A Chain A, Crystal Structure Of Jmjd3
pdb|2XUE|B Chain B, Crystal Structure Of Jmjd3
Length = 509
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 32 AMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPE 91
A ++ P+ + F+ G +L +V + G +VQL + GSRTPGH E
Sbjct: 197 AKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQL----YMKVPGSRTPGHQE 252
Query: 92 NVVTEGIEVTTGP 104
N + + GP
Sbjct: 253 NNNFCSVNINIGP 265
>pdb|4ASK|A Chain A, Crystal Structure Of Jmjd3 With Gsk-J1
pdb|4ASK|B Chain B, Crystal Structure Of Jmjd3 With Gsk-J1
Length = 510
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 32 AMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPE 91
A ++ P+ + F+ G +L +V + G +VQL + GSRTPGH E
Sbjct: 198 AKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQL----YMKVPGSRTPGHQE 253
Query: 92 NVVTEGIEVTTGP 104
N + + GP
Sbjct: 254 NNNFCSVNINIGP 266
>pdb|3AVR|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3
PEPTIDE, N-Oxyalylglycine, And Ni(Ii)
pdb|3AVS|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH
N-Oxyalylglycine, And Ni(Ii)
Length = 531
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 48 FVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGP 104
FV G LL +V + G +VQL + GSRTPGH EN + + GP
Sbjct: 239 FVRVVSAGNLLSHVGHTILGMNTVQL----YMKVPGSRTPGHQENNNFCSVNINIGP 291
>pdb|2XXZ|A Chain A, Crystal Structure Of The Human Jmjd3 Jumonji Domain
pdb|2XXZ|B Chain B, Crystal Structure Of The Human Jmjd3 Jumonji Domain
Length = 332
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 32 AMKYNPRNHKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPE 91
A ++ P+ + F+ G +L +V + G +VQL + GSRTPGH E
Sbjct: 164 AKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQL----YMKVPGSRTPGHQE 219
Query: 92 NVVTEGIEVTTGP 104
N + + GP
Sbjct: 220 NNNFCSVNINIGP 232
>pdb|3ZLI|A Chain A, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
pdb|3ZLI|B Chain B, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
Length = 478
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 49 VLSAGHGCLLQYVCLHLAGFQSVQLEDLKRLCKMGSRTPGHPENVVTEGIEVTTGP 104
V+SAG+ LL +V + G +VQL + GSRTPGH EN + + GP
Sbjct: 183 VVSAGN--LLTHVGHTILGMNTVQL----YMKVPGSRTPGHQENNNFCSVNINIGP 232
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA 156
GI PLG G+A LA ++N D V + + DG A +G EA
Sbjct: 140 GIVGAQVPLGAGIA-----------LACKYNGKDEVCLT-----LYGDGAANQGQIFEAY 183
Query: 157 ALAAHWKL 164
+AA WKL
Sbjct: 184 NMAALWKL 191
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA 156
GI PLG G+A LA ++N D V + + DG A +G EA
Sbjct: 157 GIVGAQVPLGAGIA-----------LACKYNGKDEVCLT-----LYGDGAANQGQIFEAY 200
Query: 157 ALAAHWKL 164
+AA WKL
Sbjct: 201 NMAALWKL 208
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA 156
GI PLG G+A LA ++N D V + + DG A +G EA
Sbjct: 157 GIVGAQVPLGAGIA-----------LACKYNGKDEVCLT-----LYGDGAANQGQIFEAY 200
Query: 157 ALAAHWKL 164
+AA WKL
Sbjct: 201 NMAALWKL 208
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA 156
GI PLG G+A LA ++N D V + + DG A +G EA
Sbjct: 157 GIVGAQVPLGAGIA-----------LACKYNGKDEVCLT-----LYGDGAANQGQIFEAY 200
Query: 157 ALAAHWKL 164
+AA WKL
Sbjct: 201 NMAALWKL 208
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 97 GIEVTTGPLGQGVANAVGLALAEAHLAARFNKPDAVVVDHRTYCIMSDGCAMEGISHEAA 156
GI PLG G+A LA ++N D V + + DG A +G EA
Sbjct: 157 GIVGAQVPLGAGIA-----------LACKYNGKDEVCLT-----LYGDGAANQGQIFEAY 200
Query: 157 ALAAHWKL 164
+AA WKL
Sbjct: 201 NMAALWKL 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,063,210
Number of Sequences: 62578
Number of extensions: 727629
Number of successful extensions: 1699
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1558
Number of HSP's gapped (non-prelim): 47
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)